Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 20 of 129
Found at i:2824864 original size:873 final size:872
Alignment explanation
Indices: 2821496--2827544 Score: 7196
Period size: 873 Copynumber: 6.8 Consensus size: 872
2821486 AAGCATACAA
* * * *
2821496 AGTTCATTCCCAGTCTAAGATCGGA-CTGGACCAAGGTTTGCGGCAGCACATGCTGGGCTCGAGC
1 AGTTCATTCCCAGTCTAAGATCGGATC-AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
** * * * *
2821560 ATGTGCTGGTGTTGCATTTTTGTTTGCCAGGGCACCATAGCCGGAGCATCGCCGGAGAACCTGAC
65 ATGTGCTGGTGCAGCATTTTTCTTCGCC-GGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
* * * * * * * *
2821625 TG--GTGCATTGGGGTTTCGACGATGGGGGGGCCC-GGGGGTGTGCGTACAAGATGAGTGATTGG
129 CGACG-GCATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGG
*
2821687 TGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTT-GAGAACTCACACCCCC
193 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTTCGAGAACTCACACCCCC
*
2821751 TTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
257 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
2821816 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
322 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
2821881 CCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
387 CCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* ** * * *
2821946 AAAAATCTCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCCTCTT-CCTAT
452 AAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC-AT
* * *
2822010 GAAACTTCACGTGAAAGCTTAAGAGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGC
516 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
2822075 ACGTAGAAATATGAAGGTGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGTGCATCC
581 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
2822140 TGTCTCTCTGGCC-AGCATAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
646 CGTCTCTCTGGCCGA-CGTAGTG--C-CC-GCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * ** * * *
2822204 GCATACAGAGTTCATTCCCTGTCTAAGATTGGACCGGATCGAGCATTGTGGCAGCACGATCGACA
706 GCATACGGAGTTCATTCCCAGTCTAAGAATGGACTGGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * * * *
2822269 GCATGTAAAGGGGGACCC-GACTGATCCACGGCTTCCGTATCCC-CCCCTCTGGCTGACTGAGCA
771 GCACGTAGAGGGGGACCCGGTC-GATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCG
*
2822332 CCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGG
835 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
*
2822370 AGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTA
1 AGTTCATTCCCAG--T---C---T-AAG---A-T-C--G-----GAT-----CAGACCGAGGGTT
* * * ** *
2822435 GCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGAGGCACCATCA
40 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGCCG-GGCACCATCG
* * * ** *
2822500 CAGGAGCATCGTCAGAGAACCTGACCGGCGGCATTGCTGTTCCGACGATCGGGGGGGCCGGGGGG
104 CCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCCGGGGGG
* * *
2822565 TGTGCGCACATGATGTGCAATGGGTGGTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
169 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
2822630 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
234 AAACTTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
2822695 ATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACCTCGAGTTT
299 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * ** * * *
2822760 TTAGCTGAATTGTTTTGCGCGT-AAAAAAAAAATACAAGCATCATGTCTACCTAGTTTGGGGCCA
364 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCA
** * * * *
2822824 AAACTCCTTCCGAAAAAATTTTAAAAAATCCTAAACTACAAAAAGTTTCAAAAATCATGAAAATT
429 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAAT
* *
2822889 AGAAAACGAGTCGTCTTGCCATGAAACTTCCCGTGAAGGCTTAAGGGACCATTGTATGAATTTAA
494 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*
2822954 AAGCCATAAAAATGGCATTGG--CGTACAGAAATATGAAGATGTACCTAAACCCACCTACCACCC
559 AAGCCATAAAAATGGCATTGGCACGT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* **
2823017 TATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCACCCGCCCGTCC
622 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG----CCCG--C--CC
* * ** *
2823082 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAG-ATCAAACCGG
679 GCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAAT-GGACTGG
* * * * * * *
2823146 ATCGAGGGTTGTGCCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGGTCGATCCTCAGCTTGCA
743 ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGATCCTCGGCTTGCG
* * ** * *
2823211 CATCCCGCCCC-CTTGGCCGGCTAAATGCGCGCATGCTTTTTTCATGGGTTAACTTAGGCATACG
808 CATCCCGCCCCTC-TGGCCGACTGAGCGCCCGCACGC-----TC----G-T---TT---CAT--G
* *
2823275 GAGTTCATTCTCAATCTAAGCATACGG
854 G-GTTGA----C--T-TAGGCATACGG
* * * * * *
2823302 AGTTCATTCCCAGTCGAAGATCGGATCGGACCGAGGGTTACGACAGCATATGCTAGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * *
2823367 TGTGCTGGTGCAGCAGTTTTCTTCGCCAGGTACCAT---C---G---C--CGGAGAACTTGACCG
66 TGTGCTGGTGCAGCATTTTTCTTCGCCGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
* * *
2823421 ACGGCATTGGGGTTCCGGCGATCTGGGGGG-TCGGGGGGTGTGCGCAAATGATGTGCGATGGGTG
131 ACGGCATTGGGGTTCCGACGATC-GGGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
2823485 CTGGTCCTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTT-GAGAACTCACACCCCCTT
195 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTTCGAGAACTCACACCCCCTT
* * * * *
2823549 AAAGAGCATTTGAGCTTTTACAGGTTTGCTTCTAGTAGCCATTAAAGTGTC-CAAATTGGGGATA
259 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA-TGGGGACA
* *
2823613 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATTTTTTTTTTGCATG
323 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATG
* * * * * *
2823678 CAAACAAAAATACAAGGATCACGTATACCAAGTTTGGCGCCAAAACTCTTTTCGAAAAAATTTT-
387 CCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * *
2823742 AAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAAATGAGTCATCTTGCCAT
452 AAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAG-AAAACGAGTCGTCTTGCCAT
* *
2823807 GAACCTTCACGTGAAGGCTCAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
516 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
2823872 ATGTAGAGATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCC
581 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * *
2823937 CGTCTCTCTGGCTGGCATAGTGCCCGCCCGCCCGCCCGCTGGTTTCGTCGGTTGGCTTAGGCATA
646 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * ** * *
2824002 CGGAGTTCATTCCCAGTCTAAGAATGGACTGGACCGAGGGTTACGACAATAGGATCGACAGTACG
711 CGGAGTTCATTCCCAGTCTAAGAATGGACTGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACG
** *
2824067 TAGAGGGGGACTGGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGATTGAGCGCCCGCA
776 TAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCA
* * *
2824132 AGCTTGTTTCGTGGGTTGACTTAGGCATACGG
841 CGCTCGTTTCATGGGTTGACTTAGGCATACGG
* *
2824164 AGTTCATTCCCAGTCTAAGATCCGATCAGACCGAGGGTTGCGGCACCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * *
2824229 TGTGCTGGTGCAGCATTTTTCTTCGCCGGCACACCATCGCCAGAGCA-CTGTCGGAGAACCTGAT
66 TGTGCTGGTGCAGCATTTTTCTTCGCCGG-GCACCATCGCCGGAGCATC-GTCGGAGAACCTGAC
*
2824293 CGACGGTATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
129 CGACGGCATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
2824358 GCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCACACCCCCTT
194 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCACACCCCCTT
*
2824423 AAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
259 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
2824488 TTTTTCCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGGTGAATTTTTTTGTGCATGCC
324 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * * *
2824553 AACAAAAATAAAAGCATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTACAAAAAAATTTTAAA
389 AACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* *
2824618 AAATCCCGAACTATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAA
454 AAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
2824683 ACTTCCCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATATAAATGGCATTGGCATG
519 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
*
2824748 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
584 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* *
2824813 CTCTCTGGCCGACGTAGTGCCCGTCGGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
649 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * * * *
2824878 AGTTCATTCCCAGTCTAAG-ATCGAATCAGACCGAGGGTTGCAGTAGTAGGTTCGGCAGCACGTA
714 AGTTCATTCCCAGTCTAAGAATGGACT-GGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTA
** * *
2824942 GAGGGGGACCCGACCGATCCTCGGCTTACGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACG
778 GAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACG
*
2825007 CTCATTTCATGGGTTGACTTAGGCATACGG
843 CTCGTTTCATGGGTTGACTTAGGCATACGG
* * * * *
2825037 AGTTCATTCCCAGTCTAAGATCGGATCAGACAGAGGTTTACAGTAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * ** * **
2825102 TGTGCTGGTGCCGTATTTTTCTTCGTCAGGGTGCCACCGCCGGAGCATCACCGGAGAACCTGACC
66 TGTGCTGGTGCAGCATTTTTCTTCG-CCGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACC
* ** * * *
2825167 GATGGCATTAAGGTTCC-AGTGGTCGGGGGG-CCGGGGGGCTGTGCCCACATGATGTGCGATGGG
130 GACGGCATTGGGGTTCCGA-CGATCGGGGGGCCCGGGGGG-TGTGCGCACATGATGTGCGATGGG
** *
2825230 TGCTGGTACTTGGCCCTTATATTAACCCCCTATCCCTCATCAAATCTAT--AGAAATCACACCCC
193 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CT-TCGAGAACTCACACCCC
* *
2825293 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATAGGGA
256 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
2825358 CACTTTATTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCGT
321 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * * *
2825422 GCCAATAAAAATACAAGAATCATGTCTACAAAGTTTGGGGACAAAAATCCATT-CGAAAAATTTT
386 GCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAAAAATTT
* **
2825486 TTAAAAATCCCGAACCGCAAAATA-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
450 TAAAAAATCCCGAACCATAAAA-AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
**
2825550 ATGAAACTTCACGTGAAGGCTTAACAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
514 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * **
2825615 ACACATAGAAATATGAAGATGTGGTTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
579 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
2825680 CCCGTCTCTCTGGCCGGCGTGGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTA
644 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CT---CGCTCGTTTCGTCGGTTGGCTTA
* * * * * *
2825745 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGATTGGATCAAGGGTTGCGGTAGCAGGATTGGC
705 GGCATACGGAGTTCATTCCCAGTCTAAGAATGGACTGGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * * * * *
2825810 AGCATGCAAAGGGGGACCTGG-CTGATTCTCGGCTTGTGCATCCCGCCCCTATGACCGGCTGAGC
770 AGCACGTAGAGGGGGACCCGGTC-GATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
* * **
2825874 GCTCGCACCCTCGTTTTGTGGGTTGACTTAGGCATACAGACTTCATTCCTAGTCAAGCATATGG
834 GCCCGCACGCTCGTTTCATGGGTTGACTTA-G------G---------C-A-T--A-C----GG
* * * ** * *
2825938 AGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTATGGCAGCACATGTTGCGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* *
2826003 TGTGCTGGTGCCA-CATTTTT-TAAT-GCCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTG
66 TGTGCTGGTG-CAGCATTTTTCT--TCGCC-GGGCACCATCGCCGGAGCATCGTCGGAGAACCTG
* * * * *
2826065 ACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGGTGTGCGGACATGATGTGTGA
127 ACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-CGGGG-GGTGTGCGCACATGATGTGCGA
* * * *
2826130 TGGGTGCAGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCAAGAACTCACA-C
189 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCACACC
* *
2826194 CCCTTAAAGAGCATTAGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAGAGTGTCTGAAATGGG
254 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
2826259 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGTAC
319 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
2826324 ATGCCAACAAGAATACAAGGATCATGTCTACCAATTTTGGGGCCAAAACTACTTTCGAAAAAATT
384 ATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* *
2826389 TTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
449 TTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * * * *
2826454 ACGAAACTTCGCGTCAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCATCG
514 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
2826519 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
579 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
2826584 CCCGTCTCTCTGGTCGACATAGTGCCCGCCCGCCCACCTGGCCGCTCATTTCGTCAGTTGGCTTA
644 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC-GCT---CGCTCGTTTCGTCGGTTGGCTTA
* * * * *
2826649 GGCATGCAGAGTTCATTCCCAGTCTAAG-ATCGGACTGGACTGAGGGTTACGGCAGCAGGATTGG
705 GGCATACGGAGTTCATTCCCAGTCTAAGAAT-GGACTGGACCGAGGGTTGCGGCAGCAGGATCGG
** * * * * **
2826713 CAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCACCCCTTTGGCCGGTTGAGC
769 CAGCACGTAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
* *
2826778 GCCCGTACGCTCGTTTCGTGGGTTGACTT-GGCATACGG
834 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* *
2826816 AGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * * * *
2826881 TGTGCTGGTACCA-CA--TTT-TT---C---C-TCATCG-GGGTACCATCGTTGAAGAACCTGAC
66 TGTGCTGGT-GCAGCATTTTTCTTCGCCGGGCACCATCGCCGG-AGCATCGTCGGAGAACCTGAC
* * *
2826934 C-AGCGACATTGGGGTTCCGACGATCAGGGGTGCCGCGGAAGGGTGTGCGCACATGATGTGCGAT
129 CGA-CGGCATTGGGGTTCCGACGATC-GGGGGGCC-CGG-GGGGTGTGCGCACATGATGTGCGAT
** *
2826998 GGGTGCTGGTACTTGGCCCTTATATTGTTCCCCTATCCCAT-ATCAAACCTCGAGAACTCACACC
190 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC-TCATCAAACTTCGAGAACTCACACC
* * * *
2827062 CCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTACCAGTAGCCATTAATGTGTCTAAAATGGG
254 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
2827127 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
319 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
** * *
2827192 ATGCCAAC-AAAATACAAGGATCACATCTACCAAGTTTGGGTCCAAAACACCTTCCGAAAAAATT
384 ATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * *
2827256 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
449 TTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
2827321 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
514 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
2827386 ACACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGCACAT
579 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
2827451 CCTGTCTCTCTGGCTGACGTAGTGCTTGCCCGCCCGCCCGCTCGCTAGTTTCGTCGGTTGGCTTA
644 CCCGTCTCTCTGGCCGACGTA--G--TGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTA
*
2827516 GGAATACGGAGTTCATTCCCAGTCTAAGA
705 GGCATACGGAGTTCATTCCCAGTCTAAGA
2827545 TCGCATCGCA
Statistics
Matches: 4465, Mismatches: 542, Indels: 342
0.83 0.10 0.06
Matches are distributed among these distances:
862 94 0.02
863 6 0.00
865 1 0.00
866 3 0.00
867 423 0.09
868 134 0.03
869 6 0.00
870 4 0.00
871 14 0.00
872 288 0.06
873 731 0.16
874 284 0.06
875 7 0.00
876 153 0.03
877 5 0.00
878 74 0.02
879 2 0.00
882 2 0.00
883 6 0.00
885 1 0.00
886 2 0.00
887 2 0.00
888 137 0.03
889 3 0.00
890 2 0.00
892 5 0.00
893 4 0.00
894 221 0.05
895 59 0.01
896 216 0.05
897 2 0.00
898 4 0.00
899 6 0.00
900 85 0.02
901 396 0.09
902 214 0.05
903 120 0.03
904 499 0.11
905 122 0.03
906 76 0.02
911 5 0.00
915 1 0.00
916 2 0.00
918 1 0.00
919 3 0.00
920 1 0.00
922 3 0.00
923 3 0.00
924 2 0.00
925 4 0.00
927 1 0.00
929 1 0.00
930 1 0.00
931 1 0.00
932 23 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (872 bp):
AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCAGCATTTTTCTTCGCCGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
ACGGCATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
ATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGAATGGACTGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAG
GGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTC
GTTTCATGGGTTGACTTAGGCATACGG
Found at i:2829316 original size:25 final size:26
Alignment explanation
Indices: 2829265--2829316 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2829255 GTTGACTTAG
2829265 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2829291 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2829316 G
1 G
2829317 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2829716 original size:892 final size:888
Alignment explanation
Indices: 2828395--2831699 Score: 4375
Period size: 892 Copynumber: 3.7 Consensus size: 888
2828385 GTTGACTTAG
* * *
2828395 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA-AGGTTGCGGCAGCACATGCTAG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGA-GTTGGGGCAGCACATGCCAG
* * ** * * * **
2828459 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACTATCGTCGGAGTATCGCCGTGG
64 GCTCGGGCAAGTGCTGGTGCCTCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGAAG
* * *
2828524 AACCTGACCGACGGCATTGCGGTTCCGACGATCGGGGCGGCCGGGAGGGGTGTGCGCATAGGATG
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGCC-GGAGGGGTGTGCGCACATGATG
* *
2828589 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAGACCTCAAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
2828654 ACACCCCCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
2828719 ATGTGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTT
* * * *
2828784 TGTGCATGCCAAAAAAAATACAGGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAG
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
2828849 AAATTTTAAAAAATCTCGAGCCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCTCGAACCGCAAAAAATTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
2828914 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGG
* * *
2828979 TATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGGCTTG
582 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
2829044 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGTCTGTTTGTTTCATCGGTTGGCTTAGGC
647 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTG-C-G--TGTTTCATCGGTTGGCTTAGGC
* * *
2829109 ATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAAGATAGGCAGC
708 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAAGATAGGCAGC
* * * * * * * *
2829174 ACGCAAAGGGGGACCCGATCGATCCTCGGCTTGCGCACCCCACCGCTCTGGCAGATAAGCGCCCG
773 ACGTAGAGGGGGACCCGACCGATCC-CGGCTTGCGCATCCCACCCCTCTGGCGGCTGAGCGCCCG
*
2829239 CACGCTCGTTTCGTGAGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
837 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
2829291 GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGAGTTGTGACAGCACATGCCAGGC
1 GCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGAGTTGGGGCAGCACATGCCAGGC
* * * *
2829356 TCGGGCATGTGCTGGTGCCTCATTTTTCTTCGCCTGGGCACCATCGTCGGAGCATCGCCAAAGAA
66 TCGGGCAAGTGCTGGTGCCTCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGAAGAA
* * ** * * *
2829421 CCTGATCGACGGCAATGGGGTTCCGGTGATCGGGGGGCC-GAGGGGTGTGCGTACATGACGTGCA
131 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGAGGGGTGTGCGCACATGATGTGCG
*
2829485 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAGCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
2829550 CCCCTTAAAGGGCATTTGGGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGAAATTG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
2829615 GGACACTCTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGAGCAGAATAT-TTTTGT
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TGTTTTGT
* *
2829679 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACACCTT-CGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAA
* * *
2829743 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAAT-GAAAAACAAGTCGTCT
454 ATTTTAAAAAATCTCGAACCGCAAAAAATTTCAAAAATCGTGAAAAATAG-AAAACGAGTCGTCT
*
2829807 TGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGC
* *
2829872 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTAC
583 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
2829937 GCATCCCGTCTCTCTAGCCAACGTAGTGCCCACCCACCCGCCCGCCCGCTCGTTTCATCGGTTGG
648 GCATCCCGTCTCTCTGGCCGACGTAGTG--------CCCGCCTG--CG-T-GTTTCATCGGTTGG
* ** * * *
2830002 CTTAGGCATACGTAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTACGGCAGCAAGAT
701 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAAGA-
* * * ** *
2830067 TA-GCAGCACGTAGAGGGGGACCTGGCCGATCCCCGGCTTGTGCATCCTGCCCCTTTGGTCGGCT
765 TAGGCAGCACGTAGAGGGGGACCCGACCGAT-CCCGGCTTGCGCATCCCACCCCTCTGG-CGGCT
* *
2830131 GAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
828 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
** * ** * * **
2830192 GCATACAAAGTTCATTTCCAGTCTAAGATCGGACTGGACTAAGGGTTGGGGTAGCACATGCTGGG
1 GCATACGGAGTTCA-TTCCAGTCTAAGATCGGACCGGACCGAGAGTTGGGGCAGCACATGCCAGG
* * * *
2830257 CTCGGGCAAGTGCTGGTG-CTGCATTTTTCTTCGCCGGGGCAACATCACCGGAGCATCGTCGGAG
65 CTCGGGCAAGTGCTGGTGCCT-CATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGAAG
* * * * * * *
2830321 AACCTAACCGACGGCATTGGGGTTCCGGCAATGGAGGGGGCCGGGGGGGTATGCGGACATGATGT
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGAGGGGTGTGCGCACATGATGT
2830386 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
2830451 CACCCCCTTAAAAAGCATTTAAGATTTTACAGGTTTGTTGCTAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
2830516 TGGGGACA-TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
*
2830580 GTGCATGCCAACAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * ** * * *
2830644 AATTTTGAAAAATCTCGAACTGTAAAAAATTTTGAAAATCGTGAAAAATAGAAAATGACTAGTCT
453 AATTTTAAAAAATCTCGAACCGCAAAAAATTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
2830709 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGC
* * *
2830774 ATTGG-AAATCAGCAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACGGCTTG
583 ATTGGCACAT-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *** *
2830838 CACATCCTGTCTCTCTGGCCGACGTAGTGCCCACCTGC------C--CGCCCGGCTTACGCATAC
647 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCGTGTTTCATCGGTTGGCTTAGGCATAC
* * *
2830895 GAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGT
712 GAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAAGATAGGCAGCACGT
* *
2830960 AGACGGGGACCCGACCGATCCCTGACTTGCGCATCCCACCCCTCTGGCTGGCTGAGCGCCCGCAC
777 AGAGGGGGACCCGACCGATCCC-GGCTTGCGCATCCCACCCCTCTGGC-GGCTGAGCGCCCGCAC
2831025 GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
840 GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
2831074 G-AT-C-G-G--------A-TC--AGAT-----C-GA--G-G-GTTGGGGCAGCACATG-CTGGG
1 GCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGAGTTGGGGCAGCACATGCCAGGC
* * * *
2831113 TCGGGCAAGGGCTGGTGCCGT-ATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGTCGAAGA
66 TCGGGCAAGTGCTGGTGCC-TCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGAAGA
* * * * * * *
2831177 TCTTGACTGGCGGCGTTGGGGTTCCGACGAACGGGGGGCCGG-GGGGTGTGCGCACATAATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGAGGGGTGTGCGCACATGATGTGC
* *
2831241 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCAACAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
2831306 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
2831371 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTAT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGT
* * *
2831436 GCATGCCAACAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
2831501 TTTTAAAAAATC-CTGAACC-AAAAAAATTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTT
455 TTTTAAAAAATCTC-GAACCGCAAAAAATTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * * *
2831564 GCCATGGAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGGCATATAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCA
** * * * * * *
2831629 TTGGCATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCAACCAACCGATCCCCAGCTTGCG
584 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
2831694 CATCCC
649 CATCCC
2831700 ACCCCTCTGG
Statistics
Matches: 2136, Mismatches: 239, Indels: 110
0.86 0.10 0.04
Matches are distributed among these distances:
853 149 0.07
854 275 0.13
855 101 0.05
856 16 0.01
857 2 0.00
860 2 0.00
866 4 0.00
868 2 0.00
869 1 0.00
878 1 0.00
880 1 0.00
881 7 0.00
882 167 0.08
884 1 0.00
891 3 0.00
892 463 0.22
893 1 0.00
894 10 0.00
895 129 0.06
896 16 0.01
899 1 0.00
900 120 0.06
901 82 0.04
902 321 0.15
903 113 0.05
904 148 0.07
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (888 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGAGTTGGGGCAGCACATGCCAGGC
TCGGGCAAGTGCTGGTGCCTCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGAAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGAGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCTCGAACCGCAAAAAATTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATT
GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCGTGTTTCATCGGTTGGCTTAGGCATACGAAG
TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAAGATAGGCAGCACGTAGAG
GGGGACCCGACCGATCCCGGCTTGCGCATCCCACCCCTCTGGCGGCTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:2831523 original size:25 final size:25
Alignment explanation
Indices: 2831493--2831542 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
2831483 AAACTCCTTT
*
2831493 CAAAAAAATTTTAAAAAATCCTGAAC
1 CAAAAAAA-TTTAAAAAATCATGAAC
*
2831519 CAAAAAAATTTCAAAAATCATGAA
1 CAAAAAAATTTAAAAAATCATGAA
2831543 AAATAGAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.60, C:0.14, G:0.04, T:0.22
Consensus pattern (25 bp):
CAAAAAAATTTAAAAAATCATGAAC
Found at i:2831780 original size:26 final size:26
Alignment explanation
Indices: 2831751--2831803 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2831741 GTTGACTTAG
* *
2831751 GCATATAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2831777 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2831803 G
1 G
2831804 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2833219 original size:26 final size:26
Alignment explanation
Indices: 2833183--2833235 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2833173 GTTGACTTAG
*
2833183 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2833209 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2833235 G
1 G
2833236 ATGGACTGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2836113 original size:159 final size:159
Alignment explanation
Indices: 2835818--2836184 Score: 495
Period size: 159 Copynumber: 2.3 Consensus size: 159
2835808 TACCCGTCCA
* * *
2835818 CTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCAAG
1 CTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAG
* *
2835883 GCTTGCAGCAGCAGGATCGGCAGCACATAGAGGGGGGCCCGACCGACCCCTGACTTGCCCATCCT
66 GCTTGCAGCAGCAGGATCGACAGCACATAGAGGGGGACCCGACCGACCCCTGACTTGCCCATCCT
* * *
2835948 GGCCCTCTGGCCGGCTGAGCGCCCGCATG
131 GCCCCTCTGGCCGGCTAAGCGCCCGCACG
* *
2835977 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AGACCGA
1 CTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCAA
* * * * * * * *
2836041 GGGTTGCGGTAGTAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCTGGCTTGCGCAT-C
65 GGCTTGCAGCAGCAGGATCGACAGCACATAGAGGGGGACCCGACCGACCCCTGACTTGCCCATCC
*
2836105 TCGCCCCTCTGGCCGGTTAAGCGCCCGCACG
130 T-GCCCCTCTGGCCGGCTAAGCGCCCGCACG
* * * *
2836136 CTCGTTTCGTGTGTTGACTTAGGAATACGGAGTTTATTCTCAGTCTAAG
1 CTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
2836185 CATACGGAGT
Statistics
Matches: 183, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
158 3 0.02
159 180 0.98
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (159 bp):
CTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAG
GCTTGCAGCAGCAGGATCGACAGCACATAGAGGGGGACCCGACCGACCCCTGACTTGCCCATCCT
GCCCCTCTGGCCGGCTAAGCGCCCGCACG
Found at i:2836189 original size:26 final size:26
Alignment explanation
Indices: 2836160--2836210 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2836150 TGACTTAGGA
* *
2836160 ATACGGAGTTTATTCTCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
2836186 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
2836211 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:2837991 original size:26 final size:26
Alignment explanation
Indices: 2837961--2838013 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2837951 ATTGACTTAG
*
2837961 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAATCTAA
* *
2837987 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCACAATCTAA
2838013 G
1 G
2838014 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAATCTAA
Found at i:2838323 original size:884 final size:887
Alignment explanation
Indices: 2835967--2840633 Score: 5826
Period size: 895 Copynumber: 5.2 Consensus size: 887
2835957 GCCGGCTGAG
** * *
2835967 CGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * *
2836032 CCAGACCGAGGGTTGCGGTAGTAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCTGGCT
66 CCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCT
* ** * * *
2836097 TGCGCATCTCGCCCCTCTGGCCGGTTAAGCGCCCGCACGCTCGTTTCGTGTGTTGACTTAGGAAT
131 TGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * * *
2836162 ACGGAGTTTATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
196 ACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAG
* *
2836227 GGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACC
261 GGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG---C
* * * * *
2836292 ATCACCGGAGCTTCACCGGAGAACCTAACCGGTGGCATTGGGGTTCCGACGATCGAAGGGGCTGG
323 A-CACC-GAACAT--CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCG--GGGG--GG
** *
2836357 -TGGGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
380 CCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
2836421 CCCTCATCAAA-TTTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
445 CCCTCATCAAACCTT-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
2836485 CCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTCCAAATGGTCACAAAATCTTGTACAC
509 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
2836550 TTCAAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGT
574 TTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * * *
2836615 TTGGGGCCAAAACACCTTTCG-AAAAATTTTAAAATATCCCGAACCGCT-AAAAGTCTAAAAAAT
639 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CTGAACCG-TAAAAAGTTTCAAAAAT
*
2836678 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGT
702 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * *
2836743 ATGAATTTACAAGCCATAAAAATGGCATGGGCACACAGAAATGTGAAGATGTGTCTAAACCCACC
767 ATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACC
* *
2836808 TACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCAGGTCGGCGTAGTGCC
832 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCC
* * * *
2836864 CGCCCGCCCACCCGCTCGTTTAGTCGGTTGGCTTAGGTATATGGACTTCATTCCCAGTCTAAGAT
1 CGCCCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * * **
2836929 CAGATCAGACCGAGGGTTACGGTGGCAGGATTGGCAGCACGTAGATGGGGACCCGACCGAT-TTC
62 CAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCC
* * *
2836993 AGCTTGCGCATCCCGTCCCTCTGGCCGACTGAGCGCCTGCACGCTCGCACGCTCATTTCGTGGGT
127 GGCTTGCGCATCCCGCCCCTCTGGCCGACTGA--G-C-G--C-C-CGCACGCTCGTTTCGTGGGT
* * * *
2837058 TGACTTAGGCAAACCGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCA
184 TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * *
2837123 GACCGGACCAAGGGTTGCGGCAGTACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTT
249 GACCGGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * * * *
2837188 CGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACTGGCAGTATTGGGGTTCCGACGTT
314 CGTCGGGGCA-CA---CC-GAACATC--CGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGAT
2837253 CGGGGGGGCCGGAGGGGGTGTG-GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
372 CGGGGGGGCC--AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
2837317 GG-CCCCTATCCCTCATCAAAACTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
435 GGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * *
2837381 GGTTTGCTGCCAGTAGCAACTAAAGTGTCTGAAATGGGGACACTTTTTTCATATGGTCACAAAAT
500 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
2837446 CTTGTACACTTTGAGTTTTTAACTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGA
565 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGT
* *
2837511 CTACCAAGTTTGGAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATATGAAACCGTAAAAAGTT
630 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTG-AACCGTAAAAAGTT
* * * *
2837576 TCAAAAATCATGAAAAATAGAAAACGAATCGTCTTGCCATAAAACTTCACGTGAAGGCCTAAGGG
694 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * *
2837641 ACCATTGTATGAATTTGCAAGCCATGAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
759 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTA
* * * * *** *
2837706 AACCCACCTGCC-CTCCTATCGATACACGGCTTGTGCATCCCGTCTCTCTGATTTTCATAGTGCC
824 AACCCACCTACCAC-CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCC
* *
2837770 CGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * *
2837835 TCAAACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCT
66 CCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCT
* * ** * * * *
2837900 TGCGTATCCCACCCCTCTGGCCGGTTGAGCACCCGTC-TGCTCGTTTCATGGATTGACTTAGGCA
131 TGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCG-CACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * **
2837964 TACAGAGTTCATTCACAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATC-GAACCAGACTG
195 TACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCA
* *
2838028 AGGGTTACGGCAGCACATGCTTGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCA
259 AGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
*
2838093 -A-C-AACA-CCGGAGAACTTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCAGGGGGT
324 CACCGAACATCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCAGGGGGT
* * *
2838154 GTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTTATCA
389 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * *
2838219 AACCTTGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCA
454 AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
2838284 TTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
519 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* *
2838349 TAGCTGAATTTTTTTATGCATGCCAACAAAAATGCATGGATCACGTCTACCAAGTTTGGGGCCAA
584 TAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* ** * **
2838414 AACTCCTTCCGAAAAAATTTTGAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCGTGAAAAA-A
649 AACTCCTTCCGAAAAAATTTTAAAAAAT-CTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
* *
2838478 GAAAACGAGTCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTATA
713 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * * *
2838543 AGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGAGCCTAAACCAACCTACC-CCCTAT
778 AGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
2838607 CGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CTGGCGTAGTGCC
843 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGTC-GGCGTAGTGCC
* * * * * *
2838652 CGCCCACCCGCTCGTTTCATCGATTGGCTTAGGTATATGGAGTTCATTCTCAGTCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* *
2838717 --ATG---GA---TT---G-AG--GGTTAC-G--GCAC-C--A---GGA-TC-G--G-TCCCCGG
66 CCA-GACCGAGGGTTGCGGTAGCAGGAT-CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGG
* * * * *
2838754 CTTGCGTATCCTGCCCCTCTGGCCAACTGAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGC
129 CTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * *
2838819 ATACTGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCA
194 ATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCA
* *
2838884 AGGGAATT-TGGCAGCACATGCTGGGCAT-GGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGG
259 AGGG--TTACGGCAGCACATGCTGGGC-TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * * *
2838947 GCACCATCGCCGGAGCACAGT-CGGAGAACCTGATCGACAGCATTGGGGTTCCGGTGATCAGGGG
321 GCA-CA---CC-GA--ACA-TCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGG
* * *
2839011 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGGCCCC
378 GGCC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
**
2839076 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
442 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
2839141 TGCCAGTAGCCATTAAAGTGTCTGAAATGGAGAGACTTTTTTCAAATGGTCACAAAATCTTGTAC
507 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
2839206 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAGAAGGATCACGTCTACCAA
572 ACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * **
2839271 GTTTGGGGCCAAAACTCCTTCCGAAAGAATTTAAAAAAAATCTCGAGCCGTAAAAAGTTTTGAAA
637 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTT-TAAAAAATCT-GAACCGTAAAAAGTTTCAAAA
* * *
2839336 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATA
700 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * * * * *
2839401 GTATGAATTTATAAGCCATAAAAATGGAATTGGCATGCAGAAATATAAAGATGTGGCTAAACCGA
765 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCA
* * *
2839466 CCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTC-CTTTTGGTCGGCGCAGTGCC
830 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC-TCTGGTCGGCGTAGTGCC
* * **
2839524 CGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGGATACGGAGTTCATT-CCAGTCTAAGATTGGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * *
2839588 CCAGACCGAGGGTTGCAGCAGCAGGATCAGTAGCACGCAGAGGGGGACACAGTCGATCCCCGGCT
66 CCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCT
* * * * * * * *
2839653 TGTGCATCTCGCCCCTCTGGTCGGCTGAGCACCCGCACGTTCGTTTCATGGGTTGACTTAGGCGT
131 TGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * *
2839718 AC-GAAGTTCACTCCCAGTCTAAGCGTACGGAGTTCATTCCCAGTATAAGATCAGACCGGACCAA
196 ACAG-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAA
* * * * * * ** * * *
2839782 GGGTTACAGCAGCACATGTTGGGCTTGGACATGTGTTAGTGCTACATTTTTCTTTGCCGAGGCAC
260 GGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA-
* * * *
2839847 CATCGCCGAAGCATCGTCTGAGAACCTGACCGGTGACATTGGGGTTCCGGTGATCGGGGGGGCC-
324 CA---CCGAA-CATC--CGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCA
* *
2839911 GAGGGGTGTGCGCACATGATGTGTGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCC
383 G-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
2839976 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
447 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
2840041 GTA-CCTATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTT
512 GTAGCC-ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
2840105 TGAGTGTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTA
576 CGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * ** *
2840170 GGGGTCAAAACGCCTT-CTAAAAAATTTTAAAAAATCTTGAACAATAAAAAGTTTCAAAAATTGT
641 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-TGAACCGTAAAAAGTTTCAAAAATCGT
* * * *
2840234 GAAAAATAGAAAATGAGTCATCTTGCCACGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATG
705 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
2840299 AATTTACAAGCCATAAAAATGGCATTGGCATA-AAAAATATGGAGATGTGCCTAAACCCACCTAC
770 AATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * * * *
2840363 CACCCTTTCGATCCACGGCTTGCACATCCCGTTTCTCTGGCCGACATAGTTCC
835 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCC
* * *
2840416 CGCCCACCCGCTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * ** * *
2840481 CCGGACCGAGCGTTGCGGTAGCAGGATCGAAAGCACGCAGAGGGGGACCTGGCCGATCCTCGGCT
66 CCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCT
* * * * * *
2840546 TACGTATCCCGCCCCTCTGGCCGACTGAGTGCCCGCATGCTCGTTTTGTGGGTTAACTTAGGCAT
131 TGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
2840611 ACAGAGTTCATTCCCAGTCTAAG
196 ACAGAGTTCATTCCCAGTCTAAG
2840634 ATCAGATCAG
Statistics
Matches: 3266, Mismatches: 405, Indels: 202
0.84 0.10 0.05
Matches are distributed among these distances:
855 1 0.00
856 118 0.04
857 54 0.02
858 3 0.00
859 2 0.00
860 1 0.00
861 3 0.00
863 1 0.00
864 1 0.00
865 1 0.00
866 1 0.00
867 7 0.00
868 41 0.01
869 273 0.08
870 35 0.01
871 130 0.04
872 88 0.03
873 2 0.00
875 4 0.00
878 4 0.00
880 1 0.00
881 1 0.00
882 111 0.03
883 156 0.05
884 293 0.09
886 5 0.00
887 4 0.00
889 2 0.00
892 114 0.03
893 258 0.08
894 18 0.01
895 395 0.12
896 96 0.03
897 129 0.04
900 27 0.01
901 102 0.03
902 100 0.03
903 28 0.01
904 3 0.00
905 209 0.06
906 252 0.08
907 10 0.00
908 182 0.06
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (887 bp):
CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
CCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCT
TGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
ACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAG
GGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACA
CCGAACATCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCAGGGGGTGT
GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
CCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
GCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
CTCCTTCCGAAAAAATTTTAAAAAATCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
CATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
TCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCC
Found at i:2839743 original size:26 final size:26
Alignment explanation
Indices: 2839714--2839766 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2839704 GTTGACTTAG
*
2839714 GCGTACGAAGTTCACTCCCAGTCTAA
1 GCGTACGAAGTTCACTCCCAGTATAA
* *
2839740 GCGTACGGAGTTCATTCCCAGTATAA
1 GCGTACGAAGTTCACTCCCAGTATAA
2839766 G
1 G
2839767 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCGTACGAAGTTCACTCCCAGTATAA
Found at i:2840218 original size:26 final size:26
Alignment explanation
Indices: 2840189--2840247 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 26
2840179 ACGCCTTCTA
*
2840189 AAAAATTTTAAAAAATCT-TGAACAAT
1 AAAAATTTTAAAAAAT-TGTGAAAAAT
* *
2840215 AAAAAGTTTCAAAAATTGTGAAAAAT
1 AAAAATTTTAAAAAATTGTGAAAAAT
2840241 AGAAAAT
1 A-AAAAT
2840248 GAGTCATCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 1 0.04
26 22 0.81
27 4 0.15
ACGTcount: A:0.59, C:0.05, G:0.08, T:0.27
Consensus pattern (26 bp):
AAAAATTTTAAAAAATTGTGAAAAAT
Found at i:2840733 original size:159 final size:159
Alignment explanation
Indices: 2840443--2840795 Score: 519
Period size: 159 Copynumber: 2.2 Consensus size: 159
2840433 CGTCGATTGG
* * *
2840443 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGCGTTGCGGTAGCAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGCGTTGCGGCAGCAGGAT
* *
2840508 CGAAAGCACGCAGAGGGGGACCTGGCCGATCCTCGGCTTACGTATCCCGCCCCTCTGGCCGACTG
66 CGAAAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTACGTATCCCGCCCCTCTGGCCGACTG
* **
2840573 AGTGCCCGCATGCTCGTTTTGTGGGTTAA
131 AGCGCCCGCATGCTCGTTTCATGGGTTAA
* *
2840602 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAAG-GTTGCGGCAGCAGGA
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC-AAGCGTTGCGGCAGCAGGA
* * * * * *
2840666 TCGACAGCACGCAGAGGGGGACCCGATCGTTCCTCGGCTTGCGTATCCCGCCCCTCTTGCCGGCT
65 TCGAAAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTACGTATCCCGCCCCTCTGGCCGACT
* *
2840731 GAGCGCCTGCATGCTCGTTTCATGGGTTGA
130 GAGCGCCCGCATGCTCGTTTCATGGGTTAA
*
2840761 CTTAGGCATACGGTGTTCATTCCCAGTCTAAGATC
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
2840796 CAACTGGACC
Statistics
Matches: 173, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
159 171 0.99
160 2 0.01
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (159 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGCGTTGCGGCAGCAGGAT
CGAAAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTACGTATCCCGCCCCTCTGGCCGACTG
AGCGCCCGCATGCTCGTTTCATGGGTTAA
Found at i:2840810 original size:895 final size:890
Alignment explanation
Indices: 2839018--2840633 Score: 2089
Period size: 893 Copynumber: 1.8 Consensus size: 890
2839008 GGGGGCCGGG
*
2839018 GGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGGCCCCTATCCCT
1 GGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCT
2839083 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
66 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * *
2839148 AGCCATTAAAGTGTCTGAAATGGAGAGACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
131 AGCCATTAAAGTGTCTAAAATGGAGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGA
* * * *
2839213 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGG
196 GTGTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTAGGG
* * * ** **
2839278 GCCAAAACTCCTTCCGAAAGAATTTAAAAAAAATCTCGAGCCGTAAAAAGTTTTGAAAATCATGA
261 GCCAAAACGCCTTCCGAAAAAATTTAAAAAAAATCTCGAACAATAAAAAGTTTCAAAAATCATGA
* *
2839343 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATAGTATGAA
326 AAAATAGAAAACGAGTCATCTTGCCACGAAACTTCACATGAAGGCTTAAGGGACCATAGTATGAA
* * * * *
2839408 TTTATAAGCCATAAAAATGGAATTGGCATGCAGAAATATAAAGATGTGGCTAAACCGACCTACCA
391 TTTACAAGCCATAAAAATGGAATTGGCATGAAAAAATATAAAGATGTGCCTAAACCCACCTACCA
* * * * * *
2839473 CCCTATCGATCCACAGCTTGCGCATCCCGTCCTTTTGGTCGGCGCAGTGCCCGCCCGCCCGCTCG
456 CCCTATCGATCCACAGCTTGCACATCCCGT-CTTTTGGCCGACACAGTGCCCGCCCACCCGCTCA
* ** *
2839538 TTTCGTCAGTTGGCTTAGGGATACGGAGTTCATTCCAGTCTAAGATTGGACCAGACCGAGGGTTG
520 TTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACCGAGCGTTG
* * ** *
2839603 CAGCAGCAGGATCAGTAGCACGCAGAGGGGGACACAGTCGATCCCCGGCTTGTGCATCTCGCCCC
585 CAGCAGCAGGATCAGAAGCACGCAGAGGGGGACACAGCCGATCCCCGGCTTACGCATCCCGCCCC
* * * * *
2839668 TCTGGTCGGCTGAGCACCCGCACGTTCGTTTCATGGGTTGACTTAGGCGTACGAAGTTCACTCCC
650 TCTGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGAAGTTCACTCCC
* **** * * * **
2839733 AGTCTAAGCGTACGGAGTTCATTCCCAGTATAAGATCAGACCGGACCAAGGGTTACAGCAGCACA
715 AGTCTAAGCGTACAGACCAAATTCCCAG-ACAAGATCAGACAGCACCAAGGGGGACA-CAGCACA
* * * ** * * **
2839798 TGTTGGGCTTGGACATGTGTTAGTGCTACATTTTTCTTTGCCGAGGCACCATCGCCGAAGCATCG
778 -GTT-GCCTCGGACATGCGTTACCGCTACATCTTGCTCGGCCGAGGCACCATCGCCGAAGCATCG
* *** ** *** *
2839863 TCTGAGAACCTGACCGGTGACATTGGGGTTCCGGTGATCGGGGGGGCCGA
841 TCTGAGAACATGACCGGTGACATTCCAGTTCCGAAGATCAACGGGACCGA
* * *
2839913 GGGGTGTGCGCACATGATGTGTGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
1 GGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCT
**
2839978 CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
66 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
2840043 A-CCTATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTTG
131 AGCC-ATTAAAGTGTCTAAAATGGAGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCG
2840107 AGTGTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTAGG
195 AGTGTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTAGG
* * * * **
2840172 GGTCAAAACGCCTT-CTAAAAAATTT-TAAAAAATCTTGAACAATAAAAAGTTTCAAAAATTGTG
260 GGCCAAAACGCCTTCCGAAAAAATTTAAAAAAAATCTCGAACAATAAAAAGTTTCAAAAATCATG
* ** *
2840235 AAAAATAGAAAATGAGTCATCTTGCCACGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGA
325 AAAAATAGAAAACGAGTCATCTTGCCACGAAACTTCACATGAAGGCTTAAGGGACCATAGTATGA
* **
2840300 ATTTACAAGCCATAAAAATGGCATTGGCAT-AAAAAATATGGAGATGTGCCTAAACCCACCTACC
390 ATTTACAAGCCATAAAAATGGAATTGGCATGAAAAAATATAAAGATGTGCCTAAACCCACCTACC
* * * *
2840364 ACCCTTTCGATCCACGGCTTGCACATCCCGT-TTCTCTGGCCGACATAGTTCCCGCCCACCCGCT
455 ACCCTATCGATCCACAGCTTGCACATCCCGTCTT-T-TGGCCGACACAGTGCCCGCCCACCCGCT
*
2840428 CATTTCGTC-GATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGC
518 CATTTCGTCAG-TTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGC
* * * * *
2840492 GTTGCGGTAGCAGGATC-GAAAGCACGCAGAGGGGGAC-CTGGCCGATCCTCGGCTTACGTATCC
581 GTTGCAGCAGCAGGATCAG-AAGCACGCAGAGGGGGACAC-AGCCGATCCCCGGCTTACGCATCC
** * **
2840555 CGCCCCTCTGGCCGACTGAGTGCCCGCATGCTCGTTTTGTGGGTTAACTTAGGCATAC-AGAGTT
644 CGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGA-AGTT
*
2840619 CATTCCCAGTCTAAG
708 CACTCCCAGTCTAAG
2840634 ATCAGATCAG
Statistics
Matches: 635, Mismatches: 78, Indels: 18
0.87 0.11 0.02
Matches are distributed among these distances:
890 2 0.00
891 2 0.00
892 113 0.18
893 254 0.40
894 11 0.02
895 253 0.40
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (890 bp):
GGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCT
CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCCATTAAAGTGTCTAAAATGGAGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGA
GTGTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTAGGG
GCCAAAACGCCTTCCGAAAAAATTTAAAAAAAATCTCGAACAATAAAAAGTTTCAAAAATCATGA
AAAATAGAAAACGAGTCATCTTGCCACGAAACTTCACATGAAGGCTTAAGGGACCATAGTATGAA
TTTACAAGCCATAAAAATGGAATTGGCATGAAAAAATATAAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACAGCTTGCACATCCCGTCTTTTGGCCGACACAGTGCCCGCCCACCCGCTCAT
TTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACCGAGCGTTGC
AGCAGCAGGATCAGAAGCACGCAGAGGGGGACACAGCCGATCCCCGGCTTACGCATCCCGCCCCT
CTGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGAAGTTCACTCCCA
GTCTAAGCGTACAGACCAAATTCCCAGACAAGATCAGACAGCACCAAGGGGGACACAGCACAGTT
GCCTCGGACATGCGTTACCGCTACATCTTGCTCGGCCGAGGCACCATCGCCGAAGCATCGTCTGA
GAACATGACCGGTGACATTCCAGTTCCGAAGATCAACGGGACCGA
Found at i:2841677 original size:26 final size:26
Alignment explanation
Indices: 2841641--2841693 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2841631 TTTAACTTAG
*
2841641 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2841667 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2841693 G
1 G
2841694 ATCGGACAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2844668 original size:709 final size:712
Alignment explanation
Indices: 2843291--2844843 Score: 2263
Period size: 709 Copynumber: 2.2 Consensus size: 712
2843281 TAAGCATAAT
* * *
2843291 GAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGCAACACATGCTGGGCTCGGGC
1 GAGTTCATTCCCGGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
** * * * * **
2843356 ATGTGCTGGTGCTTCATTTTTCTTCCCCGAGGCACCATCGCCAGAGCATCGTCGGAGAACTTGAC
66 ATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGGAGAACCAGAC
** * *
2843421 CGTGGGCATTAGGGTTCTGGCGATCGGGGGTGCCGGGGGGTGTGCGCACATAATGTGCGATGGGT
131 CGACGGCATTAGGGTTCCGGCGATCAGGGGTGCCGGGGGGTGTGCGCACATAATGTGCGATGGGT
* * ** *
2843486 GCTGGTACATGGCCATTATATTGGCCCCCTATCCTTCAGCAAATGTCGAGAGCTCACACCCCCTT
196 GCGGGTACATGGCCATTATATTGGCCCCCTATCCCTCAGCAAACCTCGAGAACTCACACCCCCTT
*
2843551 AAAGAGCATTTGAGATTGTACAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
261 AAAGAGCATTTGAGATTGTACAGCTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACAC
*
2843616 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTACCTGAATTTTTTGTGCATGCCA
326 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTGTGCATGCCA
* *
2843681 ACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGACAAAACTAATTCCGAAAAAGTTTTAAAA
391 AAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGACAAAACTAATTCCGAAAAAATTTTAAAA
** * *
2843746 AATTCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
456 AATTCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGAGTCGTCTTGCCATGAA
* *
2843811 ACCTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGG
521 ACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACAGG
* * *
2843876 CAGAAATATGAAGATGTGCGTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
586 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGGCTTGCGCATCCCGA
* * * * * *
2843941 CTCTCTGGCCGGCGTAGTGCCCGCCCG-CT-CGC-TCGTTTCGTCGGTTGGCTGAGGCATATG
651 CCCTCTGACCGACGTAGTGCCCGCCCGCCTCCACTTC-TTTCATCGGTTGGCTGAGGCATACG
* * *
2844001 GAGTTCATTCCCGGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACAGGCTGGGCTTGGGC
1 GAGTTCATTCCCGGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* ** *
2844066 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATTATCGGAGAACCAGAC
66 ATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGGAGAACCAGAC
* *
2844131 CGACGGCATTGGGGTTCCGGCGATCAGGGG-GCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
131 CGACGGCATTAGGGTTCCGGCGATCAGGGGTGCCGGGGGGTGTGCGCACATAATGTGCGATGGGT
* * * *
2844195 GCGGGTATATGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACACCCCCTT
196 GCGGGTACATGGCCATTATATTGGCCCCCTATCCCTCAGCAAACCTCGAGAACTCACACCCCCTT
* * * * * * *
2844260 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTGAAGTGTCTGAAGTGGGGATAC
261 AAAGAGCATTTGAGATTGTACAGCTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACAC
* *
2844325 TTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
326 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAA-TTTTTTGTGCATGCC
* * * * **
2844390 AAAAAAAATGCAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
390 AAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGACAAAACTAATTCCGAAAAAATTTTAAA
*
2844455 AAA-TCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAACAGAAAATGAGTCGTCTTGCCATGA
455 AAATTCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGAGTCGTCTTGCCATGA
* *
2844519 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACAT
520 AACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACAG
**
2844584 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGGCTTTTGCATCCCG
585 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGGCTTGCGCATCCCG
* *
2844649 ACCCTCTGACCGACGTAGTGCCTGCCCGCCTACCCACCCACTTCTTTCATCGGTTGGCTTAGGCA
650 ACCCTCTGACCGACGTAGTGCCCGCCCGCCT------CCACTTCTTTCATCGGTTGGCTGAGGCA
2844714 TACG
709 TACG
* * *
2844718 GAGTTCATT-CCGAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAG
1 GAGTTCATTCCCG-GTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * *
2844782 CTTGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGAACC
65 CATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGGAGAACC
2844844 TTCACGTGAA
Statistics
Matches: 747, Mismatches: 85, Indels: 15
0.88 0.10 0.02
Matches are distributed among these distances:
709 393 0.53
710 216 0.29
716 3 0.00
717 133 0.18
718 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (712 bp):
GAGTTCATTCCCGGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGGAGAACCAGAC
CGACGGCATTAGGGTTCCGGCGATCAGGGGTGCCGGGGGGTGTGCGCACATAATGTGCGATGGGT
GCGGGTACATGGCCATTATATTGGCCCCCTATCCCTCAGCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTGTACAGCTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTGTGCATGCCA
AAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGACAAAACTAATTCCGAAAAAATTTTAAAA
AATTCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGAGTCGTCTTGCCATGAA
ACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACAGG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGGCTTGCGCATCCCGA
CCCTCTGACCGACGTAGTGCCCGCCCGCCTCCACTTCTTTCATCGGTTGGCTGAGGCATACG
Found at i:2846581 original size:26 final size:26
Alignment explanation
Indices: 2846552--2846604 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2846542 GTTGACTTAG
* *
2846552 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGATCATTCCCAGTCTAA
2846578 GCATACGAAGATCATTCCCAGTCTAA
1 GCATACGAAGATCATTCCCAGTCTAA
2846604 G
1 G
2846605 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGATCATTCCCAGTCTAA
Found at i:2847491 original size:26 final size:26
Alignment explanation
Indices: 2847455--2847507 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2847445 GTTGACTTAG
2847455 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2847481 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2847507 G
1 G
2847508 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2847952 original size:903 final size:901
Alignment explanation
Indices: 2846211--2852674 Score: 8118
Period size: 903 Copynumber: 7.3 Consensus size: 901
2846201 ACCGGAGAAC
*
2846211 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
1 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * * *
2846276 AAAAATATGAAGATGTGCATAAACCCACCTACAACCCTATCTATCCACGGCTTGCGCATCCCGTC
66 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
2846341 TCTCTGGTCGACGTAGT----GCCCG-CTCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
131 TCTCTGGCCGGCGTAGTGCCCGCCCGCCTCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
* * * *
2846401 AGTTCATTCCCAGTCTAATATCAGACCAGACCAAGGGTTGCGGCAGCAGGATTGACAGCACACAG
196 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
* * * * *
2846466 AGGGGGACCCGGCTGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGC
261 AGGGGGACCCGACTGATCCCCGGCTTGCGCATCCTGCCCCTTTGGCCGACTGAGCGCCCGCACGC
* * *
2846531 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGATCATTCC
326 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * *
2846596 CAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAACACATGCTGGGCTCGGGCATGTGCTGGTA
391 CAGTCTAAGATCGGACTGGATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * *
2846661 CTGCATTTTTCTTCGTCGGGGCACCATCATCGGAG-ATCGTC-GAAGAACCTGACCGACGGCATT
456 CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCAG-AGAACCTGACCGGCGGCATT
*** * * * * * * *
2846724 ACTGTTTCGGCAATCGGGGGGCCCGGGGGGGTGTGTGCACATGATATGCGATGGGTGCTGGTACT
520 GGGGTTCCGACGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
2846789 TGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
585 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
2846854 TTGAGATTTTACAGGTTTGCT-CCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
650 TTGAGATTTTACAGGTTTGCTGCC-AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * *
2846918 AATGGTCACGAAATCTTGGACACTTCGAATTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAA
714 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* * * *
2846983 TACAAGGATCATGTCTACCAAGTTTGGGGCCAAAATTCTTTCTGAAAAAATTTTAAAAAATCCCG
779 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
* * *
2847048 AACGGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAA
844 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * *
2847106 CTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTCCAAGCCATAAAAATGGCATTGGAACAC
1 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
2847171 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
66 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* *
2847236 TCTCTGGCCGGCGTAGTGCTCGCCCACCCGTCAGCCCGCTCGTTTCATCGGTTGGCTTAGGCATA
131 TCTCTGGCCGGCGTAGTGCCCGCCC-GCC-TC-GCCCGCTCGTTTCATCGGTTGGCTTAGGCATA
* * * * *
2847301 CGGAGTTCATTCCCAGTCTAAGATCAGATC-GAACCGAGGATTGTGGCAGCAGGATCGGCAGCAT
193 CGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGACAGCAC
** * *
2847365 GCAGAGGGGGACTTGACTGATCCCCGACTTGCGCAT-CTCGCCTCTTTGGCCGACTGAGCGCCCG
257 GCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCT-GCCCCTTTGGCCGACTGAGCGCCCG
* *
2847429 CACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
321 CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* *
2847494 ATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTTCGGGAGCACATGCTGGGCTCGGGCATGTGC
386 ATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGC
* * * * * ** *
2847559 TGGTGCCACATTTTTCTTTC-CCGGGGCACCATCGCCAGAGCATCATCAGAGAACCTGATTGGTG
451 TGGTGCCGCATTTTTC-TTCGTCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGACCGGCG
* *
2847623 GCATTGGGGTTCCGACGATTGGGGGGGCC-GGGGGGTGTGCGCACATAATGTGCAATGGGTGCTG
515 GCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *** *
2847687 GTACATGGTTTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG
580 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
** * ** ** * * * *
2847752 AGCATCCGAGATTTTACAGTTTTGCTGCTGGTAGTTACTAAAGTGTCCGAAATGGGGGCACCTTT
645 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
2847817 TTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
710 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
* * ** *
2847882 AAAATACAAGGATCACGTCTACCTAGTTTGGGACCAAAACTAGTTCCGAAAAAATTTTAAGAAAT
775 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
** *
2847947 CCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
840 CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
2848009 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
1 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* *
2848074 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCC
66 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * *
2848139 TCTCTAGCCGGCGAAGTGCCCGCCCGCCT-ACCCGCTCATTTCATCGGTTGGCTTAGGCGTACGG
131 TCTCTGGCCGGCGTAGTGCCCGCCCGCCTCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
** * * * *
2848203 AGTTCATTCCCAGTCTAAGATTGGATCGGACCAAGGGATGCGGCAGCAGGATCGACAGCACGCAG
196 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
* * * * * *
2848268 AAGGGGACCCCGTC-GATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACG
261 AGGGGGA-CCCGACTGATCCCCGGCTTGCGCATCCTGCCCCTTTGGCCGACTGAGCGCCCGCACG
* * * * *
2848332 TTCTTTTCGTCGCTTAACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---A-T-
325 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
** * *
2848383 -CAG----A-AT-GGAC-----CGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCTTGTGCTGGT
390 CCAGTCTAAGATCGGACTGGATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
2848436 GCCGCATTTTTCTTCG-CTGGGG------C-TC----CATCGTC---G-A----A----CGGCAT
455 GCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGACCGGCGGCAT
* * * * *
2848477 TTGGGTTTC-AGCGATTGGGGGGGCCGAGGGCGGTGTGCGTACATGATGTCCGATGGGTGCTGGT
519 TGGGGTTCCGA-CGATTGGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
2848541 ACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAATCCTCAAGAACTCACACCCCCTTAAAGAG
582 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * *
2848606 TATTTGAGATGTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
647 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
2848671 CAAATGGTGACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTGTGCACGCCAAAAAA
712 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* * *
2848736 AATAGAGGGATCACGTCTACCAAGTTTGGGTCCAAAA-TGCCTTCC-AAAAAATTTTAAAAAATC
777 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAATTTTAAAAAATC
** *
2848799 CAAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAATCGTCTTGCCATGAAA
841 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
2848860 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
1 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
*
2848925 AGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
66 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * *
2848990 TCTCTGGCCGACGAAGTGCCCGCCCGCC-CACCCGTTCATTTCGTCGGTTGGCTTAGGCATACGG
131 TCTCTGGCCGGCGTAGTGCCCGCCCGCCTCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
* ** ** * * * *
2849054 AGTTCATTCCCAATCTAAGATTGGACTGGACTGAGGGTTGCGGTAGCATGATCGACAGCACACAG
196 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
** * * * * * * * ** * *
2849119 AATGGG--TCGGCCGATCCTCAGCTTGCGCATCCAGCCCCTCTT-ACCGGTTGAGCACCTGCACG
261 AGGGGGACCCGACTGATCCCCGGCTTGCGCATCCTGCCCCT-TTGGCCGACTGAGCGCCCGCACG
* * *
2849181 CTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTC
325 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * * * *
2849246 CTAGTCTAAGATCAGACTGGA-CTGAGGGTTGCGGTAGCATATGCTAGGCTCAGGCATGTGCTGG
390 CCAGTCTAAGATCGGACTGGATC-GAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * ** *
2849310 TGCCGTATTTTTCTTCGTTGGGGCACCATCGTCGGAGCACCGTCAGAGAATTTGATCGGCGGCAT
454 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGACCGGCGGCAT
* * * * * *
2849375 TGGGGTTCTGGCGA-TAGGGGGGCC-AGGAGGTGCGCGCACATGATGTGCGATGGGTGCTGGTAC
519 TGGGGTTCCGACGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
2849438 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCA
584 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
2849503 TTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTTTGAAATGGGGACACTTTTTTCA
649 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * * *
2849568 AATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTTAACTTTTTTGTGCATGCCAACAAAAA
714 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* *
2849633 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTGAAAAATCCC-
779 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
** * * *
2849697 AAGCCACAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGTGTCATCTTGCCATGAAA
844 AA-CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
2849756 CTTTACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
1 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * * *
2849821 AAAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCATGGCTTGCGCATCCCGTC
66 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * * * *
2849886 TATCTGGTCGACGTAGTGCCAGCCCGCC-CGCCCGCTCATTTCGTCGATTAGCTTAGGCATACGG
131 TCTCTGGCCGGCGTAGTGCCCGCCCGCCTCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
* ** * * * * *
2849950 AGTTTATTCCCAGTCTAAGATTGGATCAGACTGAGGGTTACGGCAGCAGGATCGGCAGCACGTAG
196 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
* * * * * * *
2850015 AGGAGGACCCGA-TCGATCCTCGGCTTACGCAT-CTCACCCCTCTGGCTGGCTGAGCGCCCGCAC
261 AGGGGGACCCGACT-GATCCCCGGCTTGCGCATCCT-GCCCCTTTGGCCGACTGAGCGCCCGCAC
* *
2850078 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGACTAAGCCTACGGAGTTCATT
324 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * *
2850143 CCCAGTCTAAGATCAGACTAGGCT-GAGGGTTACGGAAGCACATGCTGGGCTCGAGCTTGTGCTG
389 CCCAGTCTAAGATCGGACT-GGATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * *
2850207 GTGCCGCATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCGCCAAAGAACCTGACTGACGGCA
453 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGACCGGCGGCA
* * * * * *
2850272 TTGGTGTTCCGACGATCGGGGGGGCCGGAGGGGGTGTGCGCAAATGATGTGTGTTGGGTGTTGGT
518 TTGGGGTTCCGACGATTGGGGGGGCCGG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
2850337 ACTTGGCCCTTATGTTGGCCCCCTATCCCTGATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
582 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
2850402 CATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
647 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
2850467 CAAATGGTC-CAAAATCTTGTACACTTCAAGTTTTTAGCT-ATATTTTTTTGTGCATGCCAACAA
712 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTTGTGCATGCCAAAAA
** * * *
2850530 AAATTGAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTTCGAAACAATTTT----AA--
776 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* *
2850589 ---AA--GT------TTT-GAAAATCGTGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAA
841 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
2850638 CTTC-CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
1 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
*
2850702 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTC
66 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
2850767 TCTCTAGTCGGCGTAGTGCCCGCCCGCC-CGCCCGCTCGTTTCATTGGTTGGCTTAGGCATACGG
131 TCTCTGGCCGGCGTAGTGCCCGCCCGCCTCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
* * * * *
2850831 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTGGCAGCAGTAGGATCGACAACACACAG
196 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
** * * * *
2850896 AGGGGGACCCGA-TCGATCCCCGGCTTGCTTATCCTGCCCCTCTT-G-CTAGCTGAGCACCCACG
261 AGGGGGACCCGACT-GATCCCCGGCTTGCGCATCCTGCCCCT-TTGGCCGA-CTGAGCGCCCGCA
* * *
2850958 CGCTCATTTCGTGGGTTGACTTAGGGATACGGAGTTCATTCCCAATCTAAGCATACGAAGTTCAT
323 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
** * * *
2851023 TCCCAGTCTAAGATCAAACCGAACCGAGGGTTACGGCAGCACATGCTGGGCTC-GGCATGTGCTG
388 TCCCAGTCTAAGATCGGACTGGATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * ** * ** *
2851087 GTGCCGCATTTTTCTTC-CCTAGGGCACCATCGCCAAAGCATCGTCGGAGAATTTGATCGGCGGC
453 GTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGACCGGCGGC
* * *
2851151 ATTAGGGTTCCGATGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
517 ATTGGGGTTCCGACGATTGGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
2851216 TACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCAAGAACTAACACCCCCTTAAAGA
581 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
2851281 GCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
646 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
2851346 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAACAA
711 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* * * * *
2851410 AAATACAAGGTTCACGTCTACCATGTTTGGGGGCAAAACCCCTTCCG-AAAAAGTTTAAAAAATC
776 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
** * * * * * *
2851474 TTGAACCGCAAAGAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTCCCATGAAA
841 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
2851535 CTTCACATGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
1 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* *
2851600 AGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGCGCATCCCGTC
66 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* *
2851665 TCTCTGGCCGGCGTAGTGCCTGCCTGCCCG-CTCGCTCGCTCGTTTCATCGGTTGGCTTAGGTAT
131 TCTCTGGCCGGCGTAGTG-C--CC-GCCCGCCTCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
* ** * * *
2851729 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTGGTAGCAGTAGGATCGGCCGCAC
192 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCAC
* *
2851794 GCAGAGGAGGACCCGA-TCGATCCCCGGCTTGCGCATCC-GGCCCTTCTGGCCTG-CTGAGCGCC
257 GCAGAGGGGGACCCGACT-GATCCCCGGCTTGCGCATCCTGCCCCTT-TGGCC-GACTGAGCGCC
** * *
2851856 CGCACGCTTGTTTCATGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
319 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * *
2851921 TCATTCCCAGTCTAAGATCGGACCAGGCT-GAGGGTTACGGCAGCACATGCTGGGCTCGGGCTTA
384 TCATTCCCAGTCTAAGATCGGA-CTGGATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATG
* * ** *
2851985 TGCTGGTACCGCATTTTTCTTCGTCGGGACACCATCGTCGGAGCATCACCAGAGAACCAGACCGG
448 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGACCGG
* ** * * * *
2852050 CGGCATTGGTGTTCCGGTGA-TCGAGGGGCCGGAGGGGGTGTGCGCAAATGATGTGCAATGGGTG
513 CGGCATTGGGGTTCCGACGATTGGGGGGGCCGG-GGGGGTGTGCGCACATGATGTGCGATGGGTG
* * * * **
2852114 TTGATACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTACACCCTTTTA
577 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
2852179 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACT
642 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
2852244 TTTTTCAAATGGTCACAAAATCTTGTACACTTCAATTTTTTAGCTG-ATTTGTTTTGTGCATGCC
707 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTTGTGCATGCC
* *
2852308 AAACAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA
771 AAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * *
2852373 AAAATCCCGAACTGTAAAAAGTTTCAAAATTTGTGAAAAATAGAAAACGAGTCGCCTTGCCATGA
835 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
2852438 AA
900 AA
* * * *
2852440 CTTCACATGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGT
1 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * *
2852505 AGAAATATGAAGATGTGCCTAAACACACCTACCACCTTATCGATCCATGGCTTGCGCATCCCGTC
66 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
2852570 TCTCTGGACGGCGTAGT--------GCC-CGCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGG
131 TCTCTGGCCGGCGTAGTGCCCGCCCGCCTCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
* * *
2852626 AGTTCATTTCTCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCA
196 AGTTCA-TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
2852675 CATGCTGGGC
Statistics
Matches: 4837, Mismatches: 595, Indels: 275
0.85 0.10 0.05
Matches are distributed among these distances:
848 3 0.00
849 75 0.02
850 27 0.01
851 320 0.07
852 238 0.05
854 2 0.00
855 2 0.00
858 3 0.00
859 1 0.00
861 1 0.00
862 7 0.00
864 2 0.00
866 1 0.00
867 1 0.00
868 1 0.00
869 2 0.00
870 3 0.00
872 4 0.00
873 53 0.01
874 1 0.00
875 54 0.01
878 4 0.00
879 9 0.00
880 300 0.06
881 413 0.09
882 47 0.01
883 5 0.00
884 3 0.00
886 7 0.00
887 1 0.00
888 2 0.00
889 1 0.00
890 4 0.00
892 2 0.00
893 40 0.01
894 38 0.01
895 390 0.08
896 308 0.06
897 52 0.01
898 367 0.08
899 188 0.04
900 105 0.02
901 178 0.04
902 454 0.09
903 829 0.17
904 85 0.02
905 204 0.04
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGGCGTAGTGCCCGCCCGCCTCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
AGGGGGACCCGACTGATCCCCGGCTTGCGCATCCTGCCCCTTTGGCCGACTGAGCGCCCGCACGC
TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
CAGTCTAAGATCGGACTGGATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGACCGGCGGCATTG
GGGTTCCGACGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
Found at i:2849233 original size:26 final size:26
Alignment explanation
Indices: 2849203--2849255 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2849193 GTTGACTTAG
2849203 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* * *
2849229 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
2849255 G
1 G
2849256 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:2850133 original size:26 final size:26
Alignment explanation
Indices: 2850104--2850153 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
2850094 GACTTAGGCA
2850104 TACGGAGTTCATTCCCAGACTAAGCC
1 TACGGAGTTCATTCCCAGACTAAGCC
*
2850130 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGACTAAG
2850154 ATCAGACTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGACTAAGCC
Found at i:2851020 original size:26 final size:26
Alignment explanation
Indices: 2850984--2851034 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2850974 TGACTTAGGG
*
2850984 ATACGGAGTTCATTCCCAATCTAAGC
1 ATACGAAGTTCATTCCCAATCTAAGC
*
2851010 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAATCTAAG
2851035 ATCAAACCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAATCTAAGC
Found at i:2851896 original size:902 final size:900
Alignment explanation
Indices: 2850587--2852664 Score: 3006
Period size: 902 Copynumber: 2.3 Consensus size: 900
2850577 AAACAATTTT
** * *
2850587 AAAAGTTTTGAAAATCGTGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTC-CGTGAAGGC
1 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGC
2850651 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGAT
66 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGAT
* *
2850716 GTGCCTAAACCCACCTACCACCCTAT-TGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGGCG
131 GTGCCTAAACCCACCTACCACCCTATCT-ATCCACGGCTTGCGCATCCCGTCTCTCTGGACGGCG
* *
2850780 TAGTGCCCGCCCGCCCGCCCGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
195 TAGTGCCCGCCCGCTCGCTCGCTCGTTTCA-TGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
*
2850845 CTAAGATCAGACCAGACCGAGGGTGGCAGCAGTAGGATCGACAACACACAGAGGGGGACCCGATC
259 CTAAGATCAGACCAGACCGAGGGTGGCAGCAGTAGGATCGACAACACACAGAGGAGGACCCGATC
** * * * *
2850910 GATCCCCGGCTTGCTTATCCTGCCCCTCTTGCTAGCTGAGCACCCACGCGCTCATTTCGTGGGTT
324 GATCCCCGGCTTGCGCATCCGGCCCCTCTGGCTAGCTGAGCACCCACACGCTCATTTCATGGGTT
*
2850975 GACTTAGGGATACGGAGTTCATTCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAA
389 GACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAA
* *
2851040 ACC-GAACCGAGGGTTACGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCGCATTTTTCTT
454 ACCAG-ACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATATGCTGGTACCGCATTTTTCTT
** * *** *
2851103 CCCTAGGG-CACCATCGCCAAAGCATCGTCGGAGAATTTGATCGGCGGCATTAGG-GTTCCGATG
518 -CCTAGGGACACCATCGCCAAAGCATCACCAGAGAACCAGACCGGCGGCATT-GGTGTTCCGATG
* * * *
2851166 ATCGGGGGGGCC-GAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
581 ATC-GAGGGGCCGGA-GGGGGTGTGCGCAAATGATGTGCAATGGGTGCTGATACTTGGCCCTTAT
*
2851230 ATTGGCCTCCTATCCCTCATCAAACCTCAAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTT
644 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTT
*
2851295 ATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
709 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
2851360 AATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTT-TGCATGCC-AACAAAAATACAAGGTT
774 AATCTTGTACACTTCAAGTTTTTAGCTG-ATTTGTTTTGTGCATGCCAAACAAAAATACAAGGAT
* * **
2851422 CACGTCTACCATGTTTGGGGGCAAAACCCCTTCCG-AAAAAGTTTAAAAAATCTTGAACCGCA
838 CACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAAGTTTAAAAAATCCCGAACCGCA
* * * * *
2851484 AAGAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTCCCATGAAACTTCACATGAAGGC
1 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGC
* *
2851549 TTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAATAT
66 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGAT
*
2851614 GTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
131 GTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGCGCATCCCGTCTCTCTGGACGGCGT
*
2851679 AGTGCCTGCCTGCCCGCTCGCTCGCTCGTTTCATCGGTTGGCTTAGGTATACGGAGTTCATTCCC
196 AGTG-C--CC-GCCCGCTCGCTCGCTCGTTTCAT-GGTTGGCTTAGGCATACGGAGTTCATTCCC
* * ** *
2851744 AGTCTAAGATCAGACCAGACCGAGGGTGGTAGCAGTAGGATCGGCCGCACGCAGAGGAGGACCCG
256 AGTCTAAGATCAGACCAGACCGAGGGTGGCAGCAGTAGGATCGACAACACACAGAGGAGGACCCG
* * * **
2851809 ATCGATCCCCGGCTTGCGCATCCGGCCCTTCTGGCCT-GCTGAGCGCCCGCACGCTTGTTTCATG
321 ATCGATCCCCGGCTTGCGCATCCGGCCCCTCTGG-CTAGCTGAGCACCCACACGCTCATTTCATG
* * *
2851873 TGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
385 GGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
** * * *
2851938 TCGGACCAGGCTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCTTATGCTGGTACCGCATTTTT
450 TCAAACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATATGCTGGTACCGCATTTTT
* * * ** *
2852003 CTTCGTCGGGACACCATCGTCGGAGCATCACCAGAGAACCAGACCGGCGGCATTGGTGTTCCGGT
515 CTTCCTAGGGACACCATCGCCAAAGCATCACCAGAGAACCAGACCGGCGGCATTGGTGTTCCGAT
* *
2852068 GATCGAGGGGCCGGAGGGGGTGTGCGCAAATGATGTGCAATGGGTGTTGATACTTGGCCCTTATG
580 GATCGAGGGGCCGGAGGGGGTGTGCGCAAATGATGTGCAATGGGTGCTGATACTTGGCCCTTATA
* * **
2852133 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTACACCCTTTTAAAGAGCATTTGAGATTTTA
645 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTA
*
2852198 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
710 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
2852263 ATCTTGTACACTTCAATTTTTTAGCTGATTTGTTTTGTGCATGCCAAACAAAATTACAAGGATCA
775 ATCTTGTACACTTCAAGTTTTTAGCTGATTTGTTTTGTGCATGCCAAACAAAAATACAAGGATCA
* * * * *
2852328 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACTGTA
840 CGTCTACCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAAGTTTAAAAAATCCCGAACCGCA
* * *
2852389 AAAAGTTTCAAAATTTGTGAAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACATGAAGGC
1 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGC
* *
2852454 TTAAGGGACCTTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGAT
66 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGAT
* * * *
2852519 GTGCCTAAACACACCTACCACCTTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGACGGCGT
131 GTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGCGCATCCCGTCTCTCTGGACGGCGT
* * *
2852584 AGTGCCCGCCCGCTC-AT--TTCG--TCA--GTTGGCTTAGGCATACGGAGTTCATTTCTCAGTC
196 AGTGCCCGCCCGCTCGCTCGCTCGTTTCATGGTTGGCTTAGGCATACGGAGTTCA-TTCCCAGTC
* *
2852642 TAAGATCGGACTAGACCGAGGGT
260 TAAGATCAGACCAGACCGAGGGT
2852665 TGCGGCAGCA
Statistics
Matches: 1057, Mismatches: 106, Indels: 39
0.88 0.09 0.03
Matches are distributed among these distances:
893 23 0.02
894 29 0.03
896 3 0.00
897 47 0.04
898 139 0.13
899 2 0.00
900 1 0.00
901 15 0.01
902 466 0.44
903 81 0.08
904 47 0.04
905 204 0.19
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGC
TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGAT
GTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGCGCATCCCGTCTCTCTGGACGGCGT
AGTGCCCGCCCGCTCGCTCGCTCGTTTCATGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
AAGATCAGACCAGACCGAGGGTGGCAGCAGTAGGATCGACAACACACAGAGGAGGACCCGATCGA
TCCCCGGCTTGCGCATCCGGCCCCTCTGGCTAGCTGAGCACCCACACGCTCATTTCATGGGTTGA
CTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAAAC
CAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATATGCTGGTACCGCATTTTTCTTCCT
AGGGACACCATCGCCAAAGCATCACCAGAGAACCAGACCGGCGGCATTGGTGTTCCGATGATCGA
GGGGCCGGAGGGGGTGTGCGCAAATGATGTGCAATGGGTGCTGATACTTGGCCCTTATATTGGCC
CCCTATCCCTCATCAAACCTCAAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
TACACTTCAAGTTTTTAGCTGATTTGTTTTGTGCATGCCAAACAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAAGTTTAAAAAATCCCGAACCGCA
Found at i:2851914 original size:26 final size:26
Alignment explanation
Indices: 2851884--2851936 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2851874 GTTGACTTAG
2851884 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2851910 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2851936 G
1 G
2851937 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2854188 original size:26 final size:26
Alignment explanation
Indices: 2854158--2854208 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2854148 TGACTTAGGG
*
2854158 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
*
2854184 ATACGAAGTTCTTTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
2854209 ATCGGATTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:2856820 original size:26 final size:26
Alignment explanation
Indices: 2856790--2856868 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
2856780 GTTCACTTAG
2856790 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2856816 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2856842 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2856868 G
1 G
2856869 ATCGGATCAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2858642 original size:26 final size:26
Alignment explanation
Indices: 2858613--2858665 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2858603 GTTGACTTAG
*
2858613 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTAACTCCCAGTCTAA
* *
2858639 GCATACGGAGTTAATTCTCAGTCTAA
1 GCATACGGAGTTAACTCCCAGTCTAA
2858665 G
1 G
2858666 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAACTCCCAGTCTAA
Found at i:2859254 original size:894 final size:893
Alignment explanation
Indices: 2855562--2861978 Score: 7858
Period size: 903 Copynumber: 7.1 Consensus size: 893
2855552 ATAAATATAA
* *
2855562 ATTGCATGACTTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
1 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * *
2855627 CCACCTACCACCCTATCGATACACGGCTTGCGCATCCCGTCTTTCTGGCCGACGTAATGCCCGCC
66 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT-A-----G--
* * * * * *
2855692 TGCCCGCACGCTCGCTCGCTCATTTCATCGATTGGCTTAGGCATGCAGAGTTCATTCCCAGTCTA
123 TGCCCGCCCG-T--C-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * *** * * *
2855757 AGATCAGACCGGATCAAGGGTTGTGGCAGCAGGATCAACAGGACACAGAGGGGGACCCGATTGAT
184 AGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGAT
** * * * * * * *
2855822 CCCCATCTTACACGTCCTGCCCCTCTGGCCGGCTGAGCGCACGCACTCTCGTTTCGTGGGTTGAC
249 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGAC
* ** * *
2855887 TTAGGGATACGGAGTTCATTCCCAACCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC
314 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-C
* * ** * * * * * *
2855952 AAATCAAGGGCCATGACAGCACATACTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
378 GAACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCC
* * * ** *
2856017 GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGTGATCAGG
443 GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG
* * * * *
2856082 GGGCCGGGGGGGTGTGTGCACATGATGTGTGATGGGTGTTGGTACTTGGCCATTCTATTGGCCCC
508 GGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * * *
2856147 CTATCCCTCAACAAACCTTAAGAACTCACCCCCCCTTAAAGAGCATTTGAGATTTTACACGTTTG
572 CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
2856212 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTA
637 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * *
2856277 CACTTCAACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCG
702 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * * ** *
2856342 AGTTTGGGGCCAAAGCTCTTTCTGAAAGAATTTTAAAAAATCCTGAAATGCGAAAAGTTTCAAAA
767 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAA
*
2856407 ATCATGAAAAATAGAAAACGAGTCGTCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACC
832 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
2856469 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAAC
1 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* *
2856534 CCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCC
66 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCC
*
2856599 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
127 CGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
** * * * * * * *
2856664 CTGGACCGAGGGTTATGGCAGCAGGATCGGTAACACGCAGAAGGGGACCCAATTGATCCTCGACT
192 CCAGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCT
* * * * * ** * *
2856729 TGTGCATCCCACCCCTCTAGCCGGCTGAGCGCCCGCACGTTAATTTCATGGGTTCACTTAGGCAT
257 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
2856794 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTC
322 ACGGAGTTCATTCCCAGTCTAAGCATACGGAG-------------T-----T-C--A-TTC---C
* * * * * * *
2856859 CTAGTCTAAGATCGGATCAGGACCAAGGGTTCCAGTAGCACATACTGGGCTC-AGCATGTGCTGG
362 C-AGTCTAAGATCGGA-C-GAACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGG
* * * * * * * *
2856923 TGCCGTATTTTTCTTTGTC-GGGCACCATCGCCGAAGCATCACCGGATAACCTGACTGACGGCAT
424 TGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCAT
* * * *
2856987 TGGGGTTCCGACAATCGGGGGGGTCGGGGGGGTGTGCGCCCATGATGTGTGATGGGTGCTGGTAC
489 TGGGGTTCCGACGATC-GGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* **
2857052 TTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAGCA
552 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
* * * * *
2857117 TTTGAGATTTCATAGGTTTGCCGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTATCA
617 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * *
2857182 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGGTAAATTTTTTTGTGCTTG-CAACAAAAA
682 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* *
2857246 TACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTG
747 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTG
** * *
2857311 AACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGATTCGTCTTGCCATGAAACTTCACG
812 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
2857376 TGAAGGCTTAAGGAACC
877 TGAAGGCTTAAGGGACC
* *
2857393 ATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
1 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * *
2857458 CCACCTACCACCCTATCAATCCACGGCTTGCGCATCCTGTCTCTCTGGCCAGCGTAGTGCCCGCC
66 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-C
* * * *
2857523 TGCTCGCCCGCCCGTTTGTTTTGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGAT
130 --C-CGTCCG--C--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * *
2857588 CAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGAGACCCGACCGATCCCT
188 CAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCC
* * * *
2857653 GGCTTGTGCATCCCG--CCTCTGGCTGGCTGAGCGACCCGTACGCGCG-TTC---GGTTGACTTA
253 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC-ACCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * *
2857712 GGGCATAC-GAGTTCATTCCCAGTCAAAGCATACGGAGTTCATTCCCAGTATAAGATCAGACCAG
317 -GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACGA-
* * * * *
2857776 ACC-GGAGGTTACGACAGCACATGCTGGGCTCGAGCATGTGGCTGGTGCCGCATTTTTCTTCGTC
380 ACCAAG-GGTTACGGCAGCACATGCTGGGCTCGGGCATGT-GTTGGTGCCGCATTTTTCTTCGCC
* ** * * * *
2857840 GAGGTGCCATCGCCGGCAGCAATCGTCGGAGAACCT-A-C-G-GGCTTTTGGGTTTAACGACGAT
443 GGGGCACCATCGCCGG-AGC-ATCGCCGGAGAACCTGACCGGCGGC-ATTGGGGTT-CCGACGAT
* * *
2857901 CGGGGTGCCCGGGGGGTGTGCGCACATGATGT-CGATGGGTGCTGGTACTTGCCCCTTATATTAG
504 CGGGG-GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * * * *
2857965 CCCCCTATCCCTCATTAAACCTTGGAGGAACTCAACACTCCCTTAATG-GCATTTGAGATTTTAC
568 CCCCCTATCCCTCATCAAACC-T-CAAGAACTC-ACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
2858029 AGGTTTTGCTGTCAGTAAGGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTTACA
630 AGG-TTTGCTGCCAGT-A-GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
*
2858093 AAATCTTGTTACAC-TCGAGTTTTTAGCTGAATTTTTTTGTGCAATGCCAACAAAAATAAAAGGA
692 AAATCTTG-TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC-ATGCCAACAAAAATACAAGGA
* * * * *
2858157 TCACGTGTACAAAGTTTGGGGCCAGAAA-TCCATCCGAAAAAATTTTAAAAAATCCCGAACCTCA
755 TCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCA
* *
2858221 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTCCCATGAAACTTCACGTGAAGGC
819 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
2858286 TTAAGGGACC
884 TTAAGGGACC
* * *
2858296 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATTTACCTAAAC
1 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * * * *
2858361 CCACCTACCACCCTATTGATCCACGGCTTGCGCATCCTGTCTCTCTGGTCGACGTAGTGCCCGTC
66 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* *
2858426 CGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGA-CTG
131 CGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * * *
2858490 AACCGAGGGTTGTGACAGCAGGATTGGCAGCACGCTGAGGGGGAGCCGATCGATCCCCAGCTTAC
196 -ACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGC
* * * * *
2858555 GCATCCAGCCCCTCTTGTCGGCTGAGCACCCGTACGCTCGTTTCGTGTGTTGACTTAGGCATACG
260 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * *
2858620 GAGTTCACTCCCAGTCTAAGCATACGGAGTTAATTCTCAGTCTAAGATCGGATCGAACCATGGGT
325 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CGAACCAAGGGT
* * * * * *
2858685 TGCGGTAGCATATGCTGGGATCGGGCATGTGTTGGTGCCGCATTTTTCTTCCCCGGGGCAACATC
389 TACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC
* * * * *
2858750 GCCGGAGCATCGTCGAAGAACCTGACCGGTGACATTGGGGTTCCGACGATCGTGGAGGGTCGGGG
454 GCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GG-GGGCCGGGG
*
2858815 GGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
517 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
2858880 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
582 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
2858945 CCATTAAAGTGT-TAGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
647 CCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * *
2859008 TTTTTAGCTGAATTTTTTTGTGCATGCCTACAAAAATAGAAGGATCACGTCTACCAAGTTAGGGT
711 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * **
2859073 CTAAAACTCCTTCCGAAAAAATTTT-AAAAGTCCTGAACCTTAAAAAGTTTCAAAAATCATGAAA
776 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAA
* * * *
2859137 AATAGAAAACGAGTGGTTTTACCATGAAACTTCATGTGAAGGCTTAAGGGACC
841 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * ** *
2859190 ATTGTATGAATTAACAAGCCATAAAAATGGCAATGGCACACAAAAATATGAAGATGTGCCTAAAC
1 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
** *
2859255 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTGGGCGTAGTGCCCACC
66 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * * * *
2859320 TGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATTAGACCAG
131 CGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* ** * * * * * *
2859385 ACTGAGGGTTGCAGTAGCAGGATCAGTAGCATGCAGAAGGGGACCC-AGCCGATCCTCGGCTTGC
196 ACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGC
* * *
2859449 GCTTCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCACACG
260 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
2859514 GAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A--C------C-G--G-ACCAAGGGTT
325 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACGAACCAAGGGTT
* * * * *
2859554 GCGGCAGCACATGTTGGGCTCGAGCTTGTGTTGGTG-CGACATTTTTCTTCGCCAGGGCACCATC
390 ACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCG-CATTTTTCTTCGCCGGGGCACCATC
** * * * * *
2859618 GCCGGAGCATCGCTAGAGAACCTGACCGACGACATTGGGGTTTCGGCGATCGAGGGGCCGGGGGG
454 GCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGG
*
2859683 GTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
518 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * **
2859748 GAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGATAGTAGC
583 CAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
2859813 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTT
648 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
2859878 TTTAGCTGAATTTTTTTGTGCATGGCAACAAAAATACAAGGATCACATGTACCAAGTTTGGGGCC
713 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * *
2859943 AAAAATCCTTCC-AAAAAATTTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAACA
778 AAAACTCCTTCCGAAAAAA-TTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAA
* * *
2860007 ATAGAAAACGAGTCGTCTTGCCGTTAAACTTCACGTGAAGGCTTAAGGAACC
842 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
2860059 ATTGTATGAATTTACAAACCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGACTAAAC
1 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * * *
2860124 CCACCCACCAGCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCTTAGCGCCTGCC
66 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--TGCC
* * *
2860189 CACCCGCCTGCCTGATCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
127 CGCCCG--T-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * ** * * * * *
2860254 CAGACCAGACCTAGGGTTGCGGTAGCAGGATCGACAGCATGTAGAGGGGGAACCGGTCGATCCCT
188 CAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCC
* * ** *
2860319 GGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCACCCGCTCGCTCGTTTTATGGGTTGACTTTG
253 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
2860384 ACATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGAC
318 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CGAAC
* *
2860449 CAAGGGTTACGGCAGCACATGCTGGGCTCGGGCAAGTGTTGGTGCCACATTTTTCTTCGCCGGGG
382 CAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGG
* * * * *
2860514 CACCATCGCCGGAGTTAT-GCCGGAGAACCTGATCGACGGCATTGGGGTTCCGGCAATCGGGGGG
447 CACCATCGCCGGAG-CATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGG
*
2860578 GCC-GGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
510 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* ** * *
2860642 TCCCTCATCAAACCTCGAGAGGTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCG
575 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
2860707 CCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAG
640 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
2860772 TTTGAGTTTTTTGCTGAA-TTTTTTATGCATGGCAACAAAAATACAAGGATCACGTCTACCAAGT
705 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* ** * *
2860836 TTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAAGCACAAAAAGTTTCAAAAATC
770 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATC
* ** * * *
2860901 GTGAAAAATAGAAATTGAGTCATGTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACC
835 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
2860960 ATTGTATGAATTTACAAGCAATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
1 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * *
2861025 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGACCGGCATAGTGCCCGCC
66 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCC
* * * * *
2861090 CGCCCGATCGCCCGTTCGTTTCATCGGTTGGTTTAGGCATACGGAGTTCACTCCTAGTCTAAGAT
127 CGCCCG-T---CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * *
2861155 CGGACCAGACTGAGGGTTGCGACAGTAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCTC
188 CAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCC
*
2861220 GGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
253 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
** *
2861285 GCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGAC
318 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-GAAC
* * * *
2861350 CGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGG
382 CAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGG
* * * * *
2861415 CACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGTGGTTCC-AGTGATCGAGGGT
447 CACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCG-GGGG
2861479 GCCGGGGGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
510 GCCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
2861544 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCT
574 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
**
2861609 GCCAGTAGGAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
639 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
2861674 CTTCGAGTTTTTGGCTGAA-TTTTTTGTACATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
704 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * **
2861738 TCTGGGGCCAAAACTCCTTCC-AAAAATATTTTAAAAAAT-TTCAAACCGTAAAAAGTTTTGAAA
769 TTTGGGGCCAAAACTCCTTCCGAAAAA-ATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAA
* * *
2861801 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCATGTGAAGGCTTAAGGGACC
832 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
2861863 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTACCTAAAC
1 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
** ** *** *
2861928 CTTCCTACCACCCTATCGATCCATAGCTCATGCATCCCATCTCTCTGGCCG
66 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
2861979 ACGATCGGGG
Statistics
Matches: 4779, Mismatches: 586, Indels: 294
0.84 0.10 0.05
Matches are distributed among these distances:
866 4 0.00
867 162 0.03
868 215 0.04
869 190 0.04
871 1 0.00
872 1 0.00
873 10 0.00
876 2 0.00
877 180 0.04
878 2 0.00
879 2 0.00
880 1 0.00
881 2 0.00
890 2 0.00
891 1 0.00
892 2 0.00
893 3 0.00
894 384 0.08
895 174 0.04
896 114 0.02
897 104 0.02
898 86 0.02
899 308 0.06
900 153 0.03
901 708 0.15
902 249 0.05
903 808 0.17
904 14 0.00
905 1 0.00
906 1 0.00
907 112 0.02
910 1 0.00
912 1 0.00
917 1 0.00
918 1 0.00
920 6 0.00
921 4 0.00
923 38 0.01
924 319 0.07
925 249 0.05
926 42 0.01
927 7 0.00
928 114 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
CGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
ACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCG
CATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACGAACCAAGGGTTA
CGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGC
CGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTG
TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
ACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
Found at i:2860421 original size:26 final size:26
Alignment explanation
Indices: 2860385--2860436 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
2860375 TTGACTTTGA
* *
2860385 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCCAATCTAAG
2860411 CATACGGAGTTCATTCCCAATCTAAG
1 CATACGGAGTTCATTCCCAATCTAAG
2860437 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAATCTAAG
Found at i:2861420 original size:901 final size:901
Alignment explanation
Indices: 2859511--2861974 Score: 3637
Period size: 901 Copynumber: 2.7 Consensus size: 901
2859501 ACTTAGGCAC
*
2859511 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGTTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCG
* * * **
2859576 AGCTTGTGTTGGTG-CGACATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGCTAGAGAACC
66 GGCATGTGTTGGTGCCG-CATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACC
* * * *
2859640 TGACCGACGACATTGGGGTTTCGGCGATC-GAGGGGCCGGGGGGGTGTGCGCACATGATGTGTGA
130 TGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGA
* *
2859704 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCAAGAACTCACACC
194 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* **
2859769 CCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGATAGTAGCCATTAAAGTGTCTGAAATGGG
259 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
2859834 GACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTGTGC
324 GACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAA-TTTTTTGTGC
* * *
2859899 ATGGCAACAAAAATACAAGGATCACATGTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAATTT
388 ATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA-TT
* * *
2859964 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAACAATAGAAAACGAGTCGTCTTGCC
452 TTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
2860029 GTTAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAACCATAAAAATGGCATTG
517 ATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
2860094 GCAAGCAGAAATATGAAGATGTGACTAAACCCACCCACCAGCCTATCGATCCACGGCTTGCGCAT
582 GCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * * *
2860159 CCCGTCTCTCTGGCTGGCTTAGCGCCTGCCCACCCGCCTGCCTGATCATTTCGTCGGTTGGCTTA
647 CCCATCTCTCTGACCGGCATAGCGCCCGCCCACCCGCCTGCCCGATCATTTCATCGGTTGGCTTA
* **
2860224 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCTAGGGTTGCGGTAGCAGGATCGAC
712 GGCATACGGAGTTCACTCCCAGTCTAAGATCAGACCAGACCTAGGGTTGCGACAGCAGGATCGAC
* * ** *
2860289 AGCATGTAGAGGGGGAACCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCA
777 AGCACGCAGAGGGGGAACCGACCGATCCCTGGCTTACGCATCCCGCCCCTCTAGCCGGCTGAGCA
* * * ** *
2860354 CCCGCTCGCTCGTTTTATGGGTTGACTTTGACATACGGAGTTCATTCCTAGTCTAAGCAT
842 CCCGCACGCTCGTTTCATGGGTTGACTTAGACATACAAAGTTCATTCCCAGTCTAAGCAT
* *
2860414 ACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCAAGGGTTACGGCAGCACATGCTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCG
* * *
2860479 GGCAAGTGTTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGTTAT-GCCGGAGAACC
66 GGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAG-CATCGCCGGAGAACC
* * *
2860543 TGATCGACGGCATTGGGGTTCCGGCAATCGGGGGGGCC-GGGGGTGTGCGCACATGATGTACGAT
130 TGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
**
2860607 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAGGTCACACCC
195 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
2860672 TCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTGAAATGAGG
260 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
2860737 ACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTTGCTGAATTTTTTATGCAT
325 ACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTGTGCAT
*
2860802 GGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT
390 GGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAATTTT
* * ** * *
2860867 AAAAAATCCCAAAGCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAATTGAGTCATGTTGCCAT
454 AAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
2860932 GAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATTGGC
519 TAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*
2860997 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
584 AAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * *
2861062 CATCTCTCTGACCGGCATAGTGCCCGCCCGCCCG-ATCGCCCGTTCGTTTCATCGGTTGGTTTAG
649 CATCTCTCTGACCGGCATAGCGCCCGCCCACCCGCCT-GCCCGATCATTTCATCGGTTGGCTTAG
* * * **
2861126 GCATACGGAGTTCACTCCTAGTCTAAGATCGGACCAGA-CTGAGGGTTGCGACAGTAGGATCGGT
713 GCATACGGAGTTCACTCCCAGTCTAAGATCAGACCAGACCT-AGGGTTGCGACAGCAGGATCGAC
* *
2861190 AGCACGCAGAGGGGGACCCGACCGAT-CCTCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGC
777 AGCACGCAGAGGGGGAACCGACCGATCCCT-GGCTTACGCATCCCGCCCCTCTAGCCGGCTGAGC
* *
2861254 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCAT
841 ACCCGCACGCTCGTTTCATGGGTTGACTTAGACATACAAAGTTCATTCCCAGTCTAAGCAT
* * *
2861315 ACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCG
* * *
2861380 GGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCT
66 GGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCT
* * * * * *
2861445 GACCGGCGGCATTGTGGTTCCAGTGATCGAGGGTGCCGGGGGGCTGTGCGCACATGATGTGCGAT
131 GACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGAT
2861510 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
195 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* **
2861575 CCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGGAATTAAAGTGTCTGAAATGGGG
260 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
2861640 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTGTACAT
325 ACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTGTGCAT
* * *
2861705 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTCTGGGGCCAAAACTCCTTCCAAAAATATTTT
390 GGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA-ATTTT
** * **
2861770 AAAAAATTTCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
454 AAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
2861835 TAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
519 TAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * ** ** ***
2861900 ACGTAGAAATATGAAGATGTACCTAAACCTTCCTACCACCCTATCGATCCATAGCTCATGCATCC
584 AAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
2861965 CATCTCTCTG
649 CATCTCTCTG
2861975 GCCGACGATC
Statistics
Matches: 1398, Mismatches: 152, Indels: 22
0.89 0.10 0.01
Matches are distributed among these distances:
900 8 0.01
901 591 0.42
902 217 0.16
903 572 0.41
904 10 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCG
GGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCT
GACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTGTGCATG
GCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAA
AAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATTA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAA
GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCA
TCTCTCTGACCGGCATAGCGCCCGCCCACCCGCCTGCCCGATCATTTCATCGGTTGGCTTAGGCA
TACGGAGTTCACTCCCAGTCTAAGATCAGACCAGACCTAGGGTTGCGACAGCAGGATCGACAGCA
CGCAGAGGGGGAACCGACCGATCCCTGGCTTACGCATCCCGCCCCTCTAGCCGGCTGAGCACCCG
CACGCTCGTTTCATGGGTTGACTTAGACATACAAAGTTCATTCCCAGTCTAAGCAT
Found at i:2862459 original size:512 final size:510
Alignment explanation
Indices: 2861475--2863000 Score: 2386
Period size: 512 Copynumber: 3.0 Consensus size: 510
2861465 CAGTGATCGA
*
2861475 GGGTGCCGGGGGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
1 GGGT-CCGGGGGG-TGTGCTCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
2861540 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTT
64 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
** *
2861605 TGCTGCCAGTAGGAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
129 TGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * *
2861670 TACACTTCGAGTTTTTGGCTGAA-TTTTTTGTACATGCCAAAAAAAATACAAGGATCACGTCTAC
194 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * * * * * *
2861734 CAAGTCTGGGGCCAAAACTCCTTCCAAAAATATTTTAAAAAAT-TTCAAACCGTAAAAAGTTTTG
259 AAATTTTTGGGCCAAAACTCCTTCGAAAAA-ATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCG
2861798 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCATGTGAAGGCTTAAGGGACC
322 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCATGTGAAGGCTTAAGGGACC
*
2861863 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTACCTAAAC
387 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
*
2861928 CTTCCTACCACCCTATCGATCCATAGC-TCATGCATCCCATCTCTCTGGCCGACGATCGGG
452 CTTCCTACCACCCTATCGATCCATAGCTTCA--CATCCCATCTCTCTGGCCGACAATCGGG
* *
2861988 GGGTCCGGGAGGGTGTGCTCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCC
1 GGGTCCGGG-GGGTGTGCTCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
2862053 CCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
65 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
2862118 GCTGCCAGTAGCCATTAAAGTGTTTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGC
130 GCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
2862182 ACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCAAGTCTACA
195 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACA
*
2862247 AATTTTTGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAGGTTTCGAA
260 AATTTTTGGGCCAAAACTCCTTC-GAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAA
*
2862312 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCATGTGAAGGCTTAAGTGACCAT
324 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCATGTGAAGGCTTAAGGGACCAT
*
2862377 TATATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCT
389 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCT
*
2862442 TCCTACCACCCTATCGATCTATAGCTTTCACATCCCATCTCTCTGGCCGACAATCGGG
454 TCCTACCACCCTATCGATCCATAGC-TTCACATCCCATCTCTCTGGCCGACAATCGGG
2862500 GGGTCCGGGGGGGTGTGCTCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
1 GGGTCC-GGGGGGTGTGCTCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
2862565 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
65 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
2862630 GCTGCCAGTAGCCATTAAAGTGTTAGCAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
130 GCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
2862695 ACACTTCGAGTTTTTAGCTGAATTTTTTTGGGCATGCCAACAAAAATACAAGGATCACGTCTACC
195 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-C
* * * *
2862760 AAGTTTGTT--GCCAAAAC-CCTTCCG-AAAAATTTTTAAAAATCCCGAACCGCAAAAAGTTTC-
259 AAATTT-TTGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCG
* * * * *
2862820 AAAATTCATGAAAAATAGAAAACGAGTCATCTTGCCATAAAACTTCACGTGAAAGCTTAAGGGAC
322 AAAA-TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCATGTGAAGGCTTAAGGGAC
* * * *
2862885 CATTGTACGAATTTACAAGCCATAAAAATGCCATTGGCATGTAGAAATATGAAGATGTGCCCAAA
386 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAA
** ** * * *
2862950 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCCCTGGCC
451 CCTTCCTACCACCCTATCGATCCATAGCTT-CACATCCCATCTCTCTGGCC
2863001 AGCTAGTGCC
Statistics
Matches: 938, Mismatches: 62, Indels: 28
0.91 0.06 0.03
Matches are distributed among these distances:
510 6 0.01
511 240 0.26
512 564 0.60
513 117 0.12
514 9 0.01
515 2 0.00
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (510 bp):
GGGTCCGGGGGGTGTGCTCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAA
ATTTTTGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAA
TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCATGTGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCTTC
CTACCACCCTATCGATCCATAGCTTCACATCCCATCTCTCTGGCCGACAATCGGG
Found at i:2863243 original size:25 final size:25
Alignment explanation
Indices: 2863205--2863252 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
2863195 GTTGACTTAG
2863205 GCATACGGAATTCATTCCCAGTCAA
1 GCATACGGAATTCATTCCCAGTCAA
* *
2863230 GCATACGGAGTTCATTCCTAGTC
1 GCATACGGAATTCATTCCCAGTC
2863253 TAAGATCGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACGGAATTCATTCCCAGTCAA
Found at i:2864846 original size:26 final size:26
Alignment explanation
Indices: 2864795--2864847 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
2864785 GTTGACTTAG
* *
2864795 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
2864821 GCATACAGAGTTCATTCCCTA-CCTAA
1 GCATACAGAGTTCATTCCC-AGCCTAA
2864847 G
1 G
2864848 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:2865712 original size:26 final size:26
Alignment explanation
Indices: 2865683--2865735 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2865673 GTTGACTTAG
2865683 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2865709 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2865735 G
1 G
2865736 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2866439 original size:897 final size:897
Alignment explanation
Indices: 2864155--2867500 Score: 4771
Period size: 897 Copynumber: 3.7 Consensus size: 897
2864145 GAGTTCATTC
* * *
2864155 CCCT-ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGC
1 CCCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
2864219 CAGTAGGCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
66 CAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
2864284 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTT
131 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* *
2864349 TGGGGCCAAAACTCCTTTC-AAAAAATTTTAAAAAATCCCGAACCAAAAAAAGTTTCAAAAATCG
196 TGCGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCG
* ** ***
2864413 TAAAAAATGCAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGATTGTTGTAT
261 TGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
***
2864477 GAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTA
326 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * * * *
2864542 CCATCTTATCGATCCACGGCTTGCGTATCCCATCTCTCTGGTCGGCGTAATGTCCGCCCGCCCGC
391 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT-A-GT--GCCCGCCCAC
* * * * *
2864607 CTGCCCGCTCGTTTCATCGGTTGGTTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCA
452 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
** * * * * * *
2864672 GGCCAAGGGTTGCGGCAGCAGGATTGGTAGCATGCAGTGGGGGACCCGGCCGATCCCCCGCTTGT
517 GATCAAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGC
* *
2864737 GCATCCCGCCCCTCTGGCCGGCTGAGCACCTGCACGCTCGTTCCGTGGGTTGACTTAGGCATACG
582 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * **
2864802 GAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCTACCTAAGATCAGACCGAATGGAGGGT
647 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCTATCTAAGATCAGACCGGACCGAGGGT
* *
2864867 TACGACAGCACATGATGGGCTCGGCCATGTGTTGGTGCTGCATTTTTCTTCGCCGGGGCACCATC
712 TACGACAGCACATGCTGGGCTCGG-CATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC
* * ** * * *
2864932 GTCGGTGCATCACCCGAGAACCTGACCGGCGGCATTAGGGTTCCAACGAT--------CAGGGGG
776 GTCGGAGCATCGCTGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGG
*
2864989 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
841 TGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
2865046 CCCTCATCAAACCTCGAGAACTCACACCCGCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
1 CCCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
2865111 CAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
66 CAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
2865176 TCGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAA-AAAAATAAAAGGATTACGTCTACCATGTT
131 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * *
2865239 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAACCCCGAACCGAAAAAAGTTTCAAAAATCG
196 TGCGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCG
* * *
2865304 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGATTAAGGGACCATTGTAT
261 TGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
2865369 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAATCCACCTA
326 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * *
2865434 CCACACTATCGATCCACGGCTTGCACAACCCGTCTCTCTGGCCGACGTAGTGCCCACCCACCCGC
391 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGC
* * * *
2865499 CTGTTTGTTTCGTCGGTTTGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAAT-GGACCAGAT
456 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCGGACCAGAT
* * * * * * *
2865563 CGAGAGTTGCAGCAGCAGGATTGGTAGCACGTAGTGGGGGACCCAGCCGATCCCTGGCTTGCGCA
520 CAAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCA
* *
2865628 TGCCGCCCCTCTGGCCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
585 TCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * *
2865693 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCTGTCTAAGATCAGACCGGACCAAGGGTTGC
650 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCTATCTAAGATCAGACCGGACCGAGGGTTAC
* * * * * **
2865758 GATAGCACATGCTGGGCTCGAGCAAGTGTTGGTGCCGAATTTTTCTTCGTCGGGGCACCAACACC
715 GACAGCACATGCTGGGCTCG-GCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC
*
2865823 TGGAGCATTGCTGGAG-ACCTGA-CGACGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGTG
779 -GGAGCATCGCTGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGTG
2865886 TGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
843 TGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * * * *
2865941 CCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAAGTTTCCTCC
1 CCCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
2866006 CCGTAGCCATTAAAGTGTCTGAAATGGGGACGCTTTTTTCAAATGGTCACAAAATCTTGTACACT
66 CAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
2866071 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTT
131 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * *
2866136 TGCGG-CAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCT
196 TGCGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCG
*
2866200 TGAAAAATAAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
261 TGAAAAAT-AAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
2866265 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
325 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
*
2866330 ACCACCCTATCGATCCACGGCATGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCG
390 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCG
* * * * * **
2866395 CCCGCTTGTTTTGTCGGTTAGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGACCGGACTGGAT
455 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAT
* * * * * * *
2866460 CGAGGGTTGTGGTAGCGGGATCGGCAGCACGCAGAGGGGGACCGA-CCGATCCCCGACTTGCGCA
520 CAAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCA
* ** * * * *
2866524 TCCCGCACCTCTGGCCGGAAGAGCACCTGCAC-CTTTGTGTCGTGGGTTGACTTAGGCATACAGA
585 TCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGC-TCGTTTCGTGGGTTGACTTAGGCATACGGA
* * *
2866588 GTTCATTCCCAATCTAAGCATACGGAGTTCCTTCCCAATCTAAGATCAGACCGGACCGAGGGTTA
649 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCTATCTAAGATCAGACCGGACCGAGGGTTA
*
2866653 C-AGCAGCACATGCTGGGCTTGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCG
714 CGA-CAGCACATGCTGGGC-TCGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCG
* * * * *
2866717 TCGGAGCATCGCTGAAGAACATGATCGACGGCATT-GAGGTTCCGATGATCGGGGGGGCCGACGG
777 TCGGAGCATCGCTGGAGAACCTGACCGACGGCATTAG-GGTTCCGACGATC-GGGGGGCCG-GGG
* *
2866781 GGTGTGCGCGCATGATGTGCAATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTAT
839 GGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
2866840 CCCTCATCAAACCTTGAGAACTCACACCCGCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
1 CCCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
2866905 CAGTAGCCATTAAAGTGTTTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACT
66 CAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
2866970 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTT
131 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * *
2867035 TGCGG-CAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCT
196 TGCGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCG
*
2867099 TGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC-TAAGGGACCATTGTAT
261 TGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * *
2867163 GAATTTACAAACTACAAAAATGGCATTGGCATGCAGAAATATTAAGATGTGCCTAAACCCACCTA
326 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* ** *
2867228 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTGTCTGGCCGGTGTAGTGCCCGCCTGCCCGC
391 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CC-GCCCAC
* * * *
2867293 CCGCCCGCCCGTTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCA
452 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
* ** * * *
2867358 GA-CTAAGGGATATGGCAGCAGGATCGGTAGCACACAGAGGGGGACCC-GATCGATCCTCGGCTT
517 GATC-AAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCAG-CCGATCCCCGGCTT
* * * * * *
2867421 GCGCATCCCACCCCTTTTGTCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGCCATA
580 GCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
2867486 CGGAGTTCATTCCCA
645 CGGAGTTCATTCCCA
2867501 ATGTAAGGCT
Statistics
Matches: 2199, Mismatches: 222, Indels: 57
0.89 0.09 0.02
Matches are distributed among these distances:
887 22 0.01
888 296 0.13
889 13 0.01
890 45 0.02
891 105 0.05
892 252 0.11
895 221 0.10
896 260 0.12
897 443 0.20
898 49 0.02
899 315 0.14
900 3 0.00
901 98 0.04
902 76 0.03
903 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (897 bp):
CCCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
TGCGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCG
TGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGC
CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATC
AAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCAT
CCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCTATCTAAGATCAGACCGGACCGAGGGTTACG
ACAGCACATGCTGGGCTCGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGG
AGCATCGCTGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGC
GCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
Found at i:2866615 original size:26 final size:26
Alignment explanation
Indices: 2866579--2866631 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2866569 GTTGACTTAG
2866579 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
2866605 GCATACGGAGTTCCTTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
2866631 G
1 G
2866632 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:2869213 original size:26 final size:26
Alignment explanation
Indices: 2869177--2869229 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2869167 GTTGACTTAG
* *
2869177 GCATATGGAGTTCACTCCTAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
2869203 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
2869229 G
1 G
2869230 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:2871000 original size:26 final size:26
Alignment explanation
Indices: 2870957--2871009 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2870947 GTTGACTTTG
* *
2870957 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
2870983 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
2871009 G
1 G
2871010 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:2871419 original size:894 final size:895
Alignment explanation
Indices: 2868304--2872097 Score: 4948
Period size: 894 Copynumber: 4.2 Consensus size: 895
2868294 GTTGACTTAG
* * *
2868304 GCATAGGGAGTTCATTCCCAGTCTAAGATTGTACCAGACCGAGGGTTGCGACAGCACATG-TCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCACATGCT-GG
* * *
2868368 GCTCGGGCATGTATTGGTGCCGCATTTTTCTTCATTGGGGCACCATCGCCGGAGCATCACCGGAG
65 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * * *
2868433 AACCTGACCGGCGGCATTGGGGTTCCGATGATCGGAAGGGTTGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGACATTGGGGTTCCGACGATCGG-GGGGCT-GGGGGGTGTGCGCACATGATGT
* * *
2868498 GTGATAGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
2868563 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
2868628 TGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTATTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
2868693 GTGCATGCAAAAAAAAATACAATGATCACATCTACCAAGTTTGGGGCCAAAGA-TTCTTCCAAAA
388 GTGCATGCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA-ACTCCTTCCAAAA
* * *
2868757 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAAGGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC
2868822 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
2868887 CATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
2868952 CACATCCC-TATCTCTAGCCGACGTAGTGCCCGCCCGCCCGCGCGCTCATTTCGTCGGTTGGCTT
647 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CC-CACGC-CGCTCATTTCGTCGATTGGCTT
** * * * * *** *
2869016 AGGCATACGGAGTTCATTCGTAGTCTAAGATCGGACC-GAACTAAGGGTTCCAATAGTAGGATCG
709 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGCGGCAGCAGGATCG
* * * * * * * * *
2869080 ACAGCACGCAGAGGCGGACCTGGCCGATTCTCGACTTGCGTATCCCGCCCCTCTGGGCGGCTGAG
773 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
2869145 CACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCACTCCTAGTCTAA
838 CACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
2869203 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGATAGGACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
2869268 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
2869333 ACCTGACCGACGACATTAGGGTT-CGACGATCAAGGGGGTCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGACATTGGGGTTCCGACGATC--GGGGGGCTGGGGGGTGTGCGCACATGATGTG
* * **
2869397 CGATGGGTGCTGGTACTTGGCCCTTATAGTGGCCCTCTATCCCTCATCAAACCTCTTGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
2869462 TCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
2869527 GGGGACACTTTTTTCAAAAGGTCACGAAATCTTGTGCACTTCGAG-TTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
2869591 TGCATGCCAACAAAAACACAAGCATCACGTTTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
389 TGCATGCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* *
2869656 ATTTTAAAAAATCCCGAACTGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTTGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
2869721 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
2869786 TTGGCATCA-AGAAATAT-ATAGATGTGACTAAACCCACCTACCACCCTATCGATCCATGGCTTG
584 TTGGCA-CACAGAAATATGA-AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
2869849 CGCATCCCGTCGCTCTGGCCGACGTAGTGCTCGCCCGCCCGTCCGCCTGCTCGTTTCGCCGATTG
647 CGCATCCCGTCTCTCTGGCCGACGTA--G-T-GCCCGCCC--ACGCC-GCTCATTTCGTCGATTG
* * * *
2869914 GCTTAGGCATA-GGAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTGTGGCAGCAGGA
705 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGA
* * * * * *
2869978 TGGGTAGCACAG-AGAGGGGGACCCGATCGATCCCCGGCTTGCGAATCCTGCCCCTCTGGCCGGT
770 TCGGCAGCAC-GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
** * **
2870042 TGAGCATGCGTACACTCGTTTCGTGGGTTGACTTAGGCATACCAAGTTCATTCCCAGTCTAA
834 TGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
2870104 GCATACGGAGTTCATTCCCAGTCTAAGAT-TAGA-CGGACCAAGGGTTGCGACAGCACATG-TGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTGCGACAGCACATGCTGG
** * *
2870166 GCTC-GGCAACTGTTGGTGCCACATTTTTCTTCA-CGGGGCACCATCGCCGGAGCAT---C-GTG
65 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * * *
2870225 -ACC-G--C-A-TACATTAGGGTTTCTGGCGATC-GGGGGCT-GGGGGTGTGCGCACATGATGTA
130 AACCTGACCGACGACATT-GGGGTTCCGACGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTG
* *
2870282 CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
2870347 ACCCCCTTAAAGAGCGTTTGAGATTTTACGGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
2870412 GGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
2870477 TGCATGCCAAA-AAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCAAAAA
389 TGCATG-CAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
** * * * *
2870541 AATTTTAAAAAATGTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
2870606 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* **
2870671 ATAGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
2870736 GCATCCCGTCTCTCTGGCCGACGTAATGCCCGCCCAC-CCGCTCATTTCGTCGATTGGCTTAGGC
648 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACGCCGCTCATTTCGTCGATTGGCTTAGGC
* * *
2870800 ATACGGAGCTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGGCAGCAGGATTGGCAGC
713 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGCAGC
* ** * *
2870865 ACGTAGAGGGGGACCCGACCGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
778 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
* * * * * *
2870930 GTGCCCTCATTTCGTAGGTTGACTTTGGCATACGGAGTTCTTTCCCAGTCTAA
843 GTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
2870983 GCATACGGAGATCATTCCCAGTCTAAGATCGAACCAGACCGAGAGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCACATGCTGGG
*** * * * * * * *
2871048 CTTATGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGTATCATCGTCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
2871113 ACCTGA-CGAGTGGCGTTGGGGTTCCGACAATCTGGGGGGCTGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGA-CGACATTGGGGTTCCGACGATC-GGGGGGCTGGGGGGTGTGCGCACATGATGTG
* *
2871177 CGATGGGTGCTGGTACTT-GCCCTTATATTGGCTCCCTATCCCTCGTCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
2871241 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
2871306 GGGGACAATTTATTCAAATGGTCACAAAATCTTGTACAC-TCTGAGTTTTTAGCTGAATTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTT
* * * *
2871370 GTGCATGCAAACAACAATACAAGGATCACGTCTGCCAAGTTTAGGGCCAAAACTCCTTCCGAAAA
388 GTGCATGCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * *
2871435 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTGGAAAATCGTGAAAAATAAAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
2871500 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
2871565 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
583 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * ***
2871630 GCATCCCGTCTCTCTGGCC-AGCGTAGTGCCTGTCCGCCCAC-CCGCCTGCTTGTGTCATCGGCC
648 GCATCCCGTCTCTCTGGCCGA-CGTAGTG-C---CCGCCCACGCCG-CT-CAT-T-TCGTCGATT
* * * * * * *
2871693 AGCTTAGGCATACGGAGTTCAATCCCAGTCTAAGATTAGACCGGATCGAGGGTTACGGTAGGAGG
704 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGG
* * * * * *
2871758 ATCGGCAGCATGCAGAGGGGGACCAGACCGATCCCTGGCTTGCACATCCCGCCCCTTTGGCTGGC
769 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
2871823 TGAGCTCCCGTACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
834 TGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
2871885 GCATATGGAGTTCTTTCCCAGTCTAAGATC-AGACCAGACCGAGGGTTGC-AGCAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTGCGA-CAGCACATGCTG
* * *
2871948 GGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCACCGGGG---CA-------A-CATCGCCGAA
64 GGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGA
* * * * * *
2872002 GAACCTGACTGGC-AGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGTGCATATGATG
129 GAACCTGACCGACGA-CATTGGGGTTCCGACGATCGGGGGG-CTGGGGGGTGTGCGCACATGATG
* * *
2872066 TGCGATGGGTACAGGTTCTTGGCCCTTATATT
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATT
2872098 AGGGCCAAAA
Statistics
Matches: 2527, Mismatches: 308, Indels: 127
0.85 0.10 0.04
Matches are distributed among these distances:
878 27 0.01
879 184 0.07
880 23 0.01
881 6 0.00
882 30 0.01
883 20 0.01
885 182 0.07
886 279 0.11
887 11 0.00
888 8 0.00
889 8 0.00
890 7 0.00
891 71 0.03
892 27 0.01
893 11 0.00
894 429 0.17
895 39 0.02
896 2 0.00
897 278 0.11
898 244 0.10
899 147 0.06
900 27 0.01
901 175 0.07
902 292 0.12
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (895 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACGCCGCTCATTTCGTCGATTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACG
CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGTA
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:2872566 original size:26 final size:26
Alignment explanation
Indices: 2872536--2872588 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2872526 GTTGACTTAG
2872536 GCATAC-GTAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
*
2872562 GCATACAGATTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2872588 G
1 G
2872589 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2873865 original size:889 final size:887
Alignment explanation
Indices: 2872099--2874756 Score: 3851
Period size: 889 Copynumber: 3.0 Consensus size: 887
2872089 CCTTATATTA
** *
2872099 GGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTGGAAAATCTTG
1 GGGCC-AAACTCCTTCTGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTGGAAAATCATG
2872164 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
65 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
2872229 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTACCTAAACCCACCTACC
130 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
* ** * * *
2872294 ACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTTTGGCCAGCGTAATGCCTACCCGCTCGCTC
195 ACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCTGGCAT-A-G-CTGCCCGCCCGCTC
* * * * * *
2872359 GTTTTGTCGGTTAGCATAGGCATGCAAAGTTCATTCCCATTCTAAGATCAGATCAGACCGAGGGT
257 GTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA-CAGACCGAGGGT
* * * * * *
2872424 TGCAACAGCAGAATTGGCAGCACGCAGAGGGGGACCGACCAATCCCTGGCTTGCGCATCCCGCCC
321 TGTAGCAGCAGGA-TCGCAGCACGCAGAGGGGGACCGATCAATCCCCGGCTTGCGCATCCCGCCC
* * * * * * *
2872489 CTCTGGCCGGCTGAGCGCCCT-TATGCTCGTTTCATGGGTTGACTTAGGCATACGTAGTTCATTC
385 GTCTGGCTGGCTGAGC-ACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * * * **
2872553 CCAGTCTAAGCATACAGATTTCATTCCCAGTCTAAGATCGGA-CTGGACCGAGGGTTACGGTAGC
449 CCAGTCTAAGCATTCAGAGTTCATTCCCAGTCTAAGATCGGATC-AGACCGAGAGTTACGACAGC
* *** * *
2872617 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTTGAGGCACCATCGCCGGAGCA
513 ACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCA
* * * ** *
2872682 TCGTCGAAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCAAGGGAGCCGGGGGGGTGTGCGC
578 TCGTCGTAGAACCTGACCGACGGCATTAGGGTTCTGGCGATCGGGGGGGCC-GGGGGGTGTGCGC
*
2872747 ACATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
642 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
2872812 GAGAAGTCACACACCCTTAAAGAGCATTTGAGAATTTACAGGTTTGCTGCCAGTAGCCATTAAAG
707 GAGAACTCACAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
2872877 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTG
771 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTG
2872942 AATGTTTTTGTGCATGCCAAAAAAAAAACAAGGATCACGTCTACCAAGTTTG
836 AATGTTTTTGTGCATGCCAAAAAAAAAACAAGGATCACGTCTACCAAGTTTG
* ** *
2872994 GGGCCAATACTCCTTCTGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTGGAAAATCATA
1 GGGCCAA-ACTCCTTCTGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTGGAAAATCATG
*
2873059 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
65 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
2873124 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCAAAACCCACCTACC
130 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
*
2873189 ACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCTGGCATAG-TGCCCGCCCGCTCATT
195 ACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCTGGCATAGCTGCCCGCCCGCTCGTT
* * **
2873253 TCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTGGTCTAAGATCAGACCAGACCGAGGGTTGT
260 TCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA-CAGACCGAGGGTTGT
* * * *
2873318 AGCAACAGGCTCAGCAGCACGCA-TGGGGGACCCGATCAATCCCCGGCATGCGCATCCCGCCCGT
324 AGCAGCAGGATC-GCAGCACGCAGAGGGGGA-CCGATCAATCCCCGGCTTGCGCATCCCGCCCGT
2873382 CTGGCTGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
387 CTGGCTGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
*
2873447 GTCTAAGCATTCAGAGTTCATTCCCAGTCTAAGATCTGATCAGACCGAGAGTTACGACAGCACAT
452 GTCTAAGCATTCAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGAGTTACGACAGCACAT
* *
2873512 GCTGGGCTCAGGCATGTGTTGGTGTCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGT
517 GCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGT
* * *
2873577 C-TAGAACCTGACCGATGGCATTAGTGTTCTTGCGATCGGGGGGGCCGGGGGGTGTGCGCACATG
582 CGTAGAACCTGACCGACGGCATTAGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATG
*
2873641 ATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
647 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
**
2873706 CTTGCACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
712 CTCACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
2873771 AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGT
776 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGT
* *
2873836 TTTTGTGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
841 TTTTGTGCATGCCAAAAAAAAAACAAGGATCACGTCTACCAAGTTTG
* * * ** **
2873883 GGACCCAAACTCCTTCTGAAAAAATTTAAAAAAATCCCAAACCATAAAAAGTTTCAAAAATTGTG
1 GG-GCCAAACTCCTTCTGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTGGAAAATCATG
2873948 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
65 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
2874013 ATTTACAGGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
130 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
* ** **
2874078 ACCCTATCGATCCACGGCTTGCGCGTCCCATCTCTCTGGTCGACGTAGTGCCCACCCGCTTGCCC
195 ACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCT-G--G-C-T-G-G--CA-TAGC-TGCCC
* *
2874143 ACCCGTTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGAC
249 -GCC---CGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGAC
* * *
2874208 AGGTCC-ACGGTT-TCCAGTAGCAGGATCGACAGCACGCAGAGGGGGATCCGATCAATCCCCGGC
310 A-GACCGAGGGTTGT--AGCAGCAGGATCG-CAGCACGCAGAGGGGGA-CCGATCAATCCCCGGC
* * * *
2874271 TTACGCATCCCACCCGTCTGGCTAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
370 TTGCGCATCCCGCCCGTCTGGCTGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCA
** *
2874336 TATAGAGTTCATT-CCAGTCTAAGCATTCAAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGA
435 TACGGAGTTCATTCCCAGTCTAAGCATTCAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGA
* * * * *
2874400 GAGTTGCAACAGCACATGCTGGGCTTGGGCATGTGTT-TTACCGTATTTTTCTTCACCGGGGCAC
500 GAGTTACGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCACCGGGGCAC
*
2874464 CATCGTCGGAGCATCGTCGTAGAACCTGACCGACGGCATTAGGGTTCTGGCGATTTGGGGGGGTC
565 CATCGTCGGAGCATCGTCGTAGAACCTGACCGACGGCATTAGGGTTCTGGCGA-TCGGGGGGG-C
* *
2874529 GGGGGGGTGTGCGCACATGGTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
628 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
2874594 CCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
693 CCTCATCAAACCTCGAGAACTCACACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
2874659 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTT
757 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
*
2874724 CAAGTTTTTAGCTGAAT-TTTTTGTACATGCCAA
822 CAAGTTTTTAGCTGAATGTTTTTGTGCATGCCAA
2874757 CAAAGTTTCG
Statistics
Matches: 1587, Mismatches: 144, Indels: 53
0.89 0.08 0.03
Matches are distributed among these distances:
888 2 0.00
889 455 0.29
890 51 0.03
891 280 0.18
892 2 0.00
893 2 0.00
894 4 0.00
895 225 0.14
896 1 0.00
898 2 0.00
899 1 0.00
901 5 0.00
902 2 0.00
903 1 0.00
904 50 0.03
905 185 0.12
906 116 0.07
907 203 0.13
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (887 bp):
GGGCCAAACTCCTTCTGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTGGAAAATCATGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCTGGCATAGCTGCCCGCCCGCTCGTTT
CGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACAGACCGAGGGTTGTAG
CAGCAGGATCGCAGCACGCAGAGGGGGACCGATCAATCCCCGGCTTGCGCATCCCGCCCGTCTGG
CTGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
AAGCATTCAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGAGTTACGACAGCACATGCTG
GGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGTA
GAACCTGACCGACGGCATTAGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTG
TGCATGCCAAAAAAAAAACAAGGATCACGTCTACCAAGTTTG
Found at i:2875186 original size:26 final size:26
Alignment explanation
Indices: 2875150--2875202 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2875140 GTTGACTTAG
* *
2875150 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTACCAGTCTAA
2875176 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
2875202 G
1 G
2875203 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:2875549 original size:816 final size:822
Alignment explanation
Indices: 2873930--2875559 Score: 2396
Period size: 816 Copynumber: 2.0 Consensus size: 822
2873920 CAAACCATAA
* *
2873930 AAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
1 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCT
*
2873995 TAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
66 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * * *
2874060 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCGTCCCATCTCTCTGGTCGACGTA
131 TGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTACGCATCCCATCTCTCTGGCCGACGTA
*
2874125 GTGCCCACCCGCTTGCCCACCCGTTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATT
196 GTGCCCACCCGC-TGCCCACCC--TCGCTCGTTTCGTCGATTGGCTTAGGCATACGAAGTTCATT
* * * * *
2874190 CCCAGTCTAAGATCGGACAGGTCCACGGTTTCCAGTAGCAGGATCGACAGCACGCAGAGGGGGAT
258 CCCAGTCTAAGATCGGACAGGACCAAGGTGTCCAGTAGCAGGATCGACAGCACACAGAGGGGGAC
* *
2874255 CCGATCAATCCCCGGCTTACGCATCCCACCCGTCTGGCTAGCTGAGCACCCGCACGCTCGTTTCG
323 CCGATCAATCCCCAGCTTACGCATCCCACCCG-CTGGCAAGCTGAGCACCCGCACGCTCGTTTCG
* * *
2874320 TGGGTTGACTTAGGCATATAGAGTTCATTCCAGTCTAAGCATTCAAAGTTCATTCCCAGTCTAAG
387 TGGGTTGACTTAGGCATACAGAGTTCATTCCAGTCTAAGCATACAAAGTTCATTACCAGTCTAAG
** *
2874385 ATCGGATCAGACCGAGAGTTGCAACAGCACATGCTGGGCTTGGGCATGTGTTTTACCGTATTTTT
452 ATCGGATCAGACCGAGAGTTGCAACAGCACATGCTGGGC-TGGGCATGTGTGGTACCGCATTTTT
*
2874450 CTTCACCGGGGCACCATCGTCGGAGCATCGTCGTAGAACCTGACCGACGGCATTAGGGTTCTGGC
516 CTTCACCGGGGCACCATCGTCGGAGCATCGTCGTAGAACCTGACCGACGGCATTAGGGTTCCGGC
* * * * *
2874515 GATTTGGGGGGGTCGGGGGGGTGTGCGCACATGGTGTGCGATGGGTGCTGGTACTTGGCCCTTAT
581 GA-TTGCGGGGGCCGGGGGGGTGTGCGCACATGATGCGCGATGGGTGCTAGTACTTGGCCCTTAT
2874580 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTT
645 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTT
*
2874645 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
710 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAA
2874710 AATATTGTACACTTCAAGTTTTTAGCTGAATTTTTTGTACATGCCAAC
775 AATATTGTACACTTCAAGTTTTTAGCTGAATTTTTTGTACATGCCAAC
*
2874758 AAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGT-ATCTTGCCATGAAACTTCACGTGAAGGCT
1 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCT
* *
2874822 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGGATTGGCACT-CAGAAATATGAGGAT
66 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAATATGAAGAT
* *
2874886 GTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTACGCATTCCGTCTCTCTGGCCGACGT
130 GTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTACGCATCCCATCTCTCTGGCCGACGT
* * * *
2874951 AGTGCCC-GCC-C-GCCC-GCC-CGCTCGTTTCGTCGATTGGCTTAGGCATATGGAGTTCATTCC
195 AGTGCCCACCCGCTGCCCACCCTCGCTCGTTTCGTCGATTGGCTTAGGCATACGAAGTTCATTCC
* *
2875011 TAGTCTAAGATCGGACTA-GACCAAGG-GTCACGGCTA-CAGGATC-AGCAGCACACAGAGGGGG
260 CAGTCTAAGATCGGAC-AGGACCAAGGTGTC-CAG-TAGCAGGATCGA-CAGCACACAGAGGGGG
* * * **
2875072 ACCCGATCGAT-CCCAGCTTGCGCATCCCGCCC-CATGGCAAGCTGAGTGCCCGCACGCTCGTTT
321 ACCCGATCAATCCCCAGCTTACGCATCCCACCCGC-TGGCAAGCTGAGCACCCGCACGCTCGTTT
* * **
2875135 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATTACCAGTCT
385 CGTGGGTTGACTTAGGCATACAGAGTTCATT-CCAGTCTAAGCATACAAAGTTCATTACCAGTCT
* * *** *
2875200 AAGATCGGATCAGACTGAGGGTTGCGGTAGCACATGCTGGG-TGCGAGCATGTGCTGGTGCCGCA
449 AAGATCGGATCAGACCGAGAGTTGCAACAGCACATGCTGGGCTG-G-GCATGTG-TGGTACCGCA
** * * * *
2875264 TTTTTCTTCGTCGGGGCACCATGGTCGGAGCATCGTCAG-AGAACCTGATCGGCGGCATTGGGGT
511 TTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTC-GTAGAACCTGACCGACGGCATTAGGGT
2875328 TCCGGCGA-T-CGGGGGCCGAGGGGGG-GTGCGCACATGATGCGCGATGGGTGCTAGTACTTGGC
575 TCCGGCGATTGCGGGGGCCG-GGGGGGTGTGCGCACATGATGCGCGATGGGTGCTAGTACTTGGC
* *
2875390 CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCGTTTGA
639 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGA
2875455 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGG
704 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGG
* *
2875520 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
769 TCACAAAATATTGTACACTTCAAGTTTTTAGCTGAATTTT
2875560 CTTATGCATG
Statistics
Matches: 726, Mismatches: 64, Indels: 36
0.88 0.08 0.04
Matches are distributed among these distances:
816 209 0.29
817 63 0.09
818 92 0.13
819 162 0.22
820 4 0.01
822 2 0.00
823 4 0.01
825 1 0.00
826 2 0.00
827 153 0.21
828 34 0.05
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.26
Consensus pattern (822 bp):
AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCT
TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
TGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTACGCATCCCATCTCTCTGGCCGACGTA
GTGCCCACCCGCTGCCCACCCTCGCTCGTTTCGTCGATTGGCTTAGGCATACGAAGTTCATTCCC
AGTCTAAGATCGGACAGGACCAAGGTGTCCAGTAGCAGGATCGACAGCACACAGAGGGGGACCCG
ATCAATCCCCAGCTTACGCATCCCACCCGCTGGCAAGCTGAGCACCCGCACGCTCGTTTCGTGGG
TTGACTTAGGCATACAGAGTTCATTCCAGTCTAAGCATACAAAGTTCATTACCAGTCTAAGATCG
GATCAGACCGAGAGTTGCAACAGCACATGCTGGGCTGGGCATGTGTGGTACCGCATTTTTCTTCA
CCGGGGCACCATCGTCGGAGCATCGTCGTAGAACCTGACCGACGGCATTAGGGTTCCGGCGATTG
CGGGGGCCGGGGGGGTGTGCGCACATGATGCGCGATGGGTGCTAGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATATT
GTACACTTCAAGTTTTTAGCTGAATTTTTTGTACATGCCAAC
Found at i:2876105 original size:26 final size:26
Alignment explanation
Indices: 2876053--2876105 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2876043 GTTGACTTGG
* * * *
2876053 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACAGAGTTCATTCCCAATCTAA
2876079 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
2876105 G
1 G
2876106 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:2877061 original size:159 final size:159
Alignment explanation
Indices: 2876764--2877146 Score: 520
Period size: 159 Copynumber: 2.4 Consensus size: 159
2876754 CTTGCCCGCC
* * * * *
2876764 CGCCCGCCCGCTCTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT-CAG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAC-G
* *
2876828 ACCGGACTGAGGGTTACGACAGCAGGATCGACAAAACGTAGAGAGGGACCCGACCGATCCCCGAC
65 ACCGGACTGAGGGTTACGACAACAGGATCGACAAAACGCAGAGAGGGACCCGACCGATCCCCGAC
*
2876893 TTGCACATCCCGCCCCTCT-ACTCGGCTTAG
130 TTGCACATCCCGCCCCTCTGAC-CGGCTGAG
* * *
2876923 CGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTTATTCCCAGTCTAAGATACGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATACGA
* * ** * **
2876988 TCGGACTGAGGGTTAC-AGCAACAGGATCGGCAGCATGCAGAGAGGGACCCGGTCGATCCCCGAC
66 CCGGACTGAGGGTTACGA-CAACAGGATCGACAAAACGCAGAGAGGGACCCGACCGATCCCCGAC
* * *
2877052 TTGCGCATCCCGCCCCTTTGGCCGGCTGAG
130 TTGCACATCCCGCCCCTCTGACCGGCTGAG
2877082 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATACG
2877147 GAGTTCATTC
Statistics
Matches: 196, Mismatches: 24, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
158 1 0.01
159 188 0.96
160 7 0.04
ACGTcount: A:0.20, C:0.30, G:0.27, T:0.22
Consensus pattern (159 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATACGA
CCGGACTGAGGGTTACGACAACAGGATCGACAAAACGCAGAGAGGGACCCGACCGATCCCCGACT
TGCACATCCCGCCCCTCTGACCGGCTGAG
Found at i:2877150 original size:26 final size:26
Alignment explanation
Indices: 2877114--2877166 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2877104 GTTGACTTAG
2877114 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
2877140 GCATACGGAGTTCATTCTTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2877166 G
1 G
2877167 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2878061 original size:25 final size:26
Alignment explanation
Indices: 2878013--2878061 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
2878003 GACTTAGGCA
2878013 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGGAGTTCATTCCCAGTCTAAGCT
2878039 TACGGAGTTCATT-CCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
2878062 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:2878937 original size:26 final size:26
Alignment explanation
Indices: 2878901--2878953 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2878891 GTTGACTTAG
2878901 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2878927 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2878953 G
1 G
2878954 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2879840 original size:26 final size:26
Alignment explanation
Indices: 2879804--2879856 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2879794 CTTGACTTAG
2879804 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2879830 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2879856 G
1 G
2879857 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2880443 original size:901 final size:901
Alignment explanation
Indices: 2876931--2882398 Score: 7222
Period size: 903 Copynumber: 6.1 Consensus size: 901
2876921 AGCGCTCGCA
* * * * * * *
2876931 CGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTTATTCCCAGTCTAAGATAC-GATCGGACT
1 CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-CGGACCGGACC
* * * * * *
2876995 GAGGGTTACAGCA-A-CAGGATCGGCAGCATGCAGAGAGGGACCCGGTCGATCCCCGACTTGCGC
65 GAGGGTTGC-G-ATAGCAAGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
*
2877058 ATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
128 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
** *
2877123 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTTAGTCTAAGATCGGACCAGACCA-TGGGTT
193 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CAGAGGGTT
* * * ** * **
2877187 ACAGCAGCTCATGCTGGGCTCAAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCG
257 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * * ** * * *
2877252 TCGGAGCATCACCAGAGAACTTGTCCGGTGACATTAGGGTTCCGACGATCGGGGGGGCCAAGGGG
322 TCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGG
* *
2877317 GTGTGTGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
386 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * *
2877382 CAAACCTCGAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTATAGGTTTGCTGTCAGTAGC
451 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * * *
2877447 AACTAAAGCGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTT
516 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
2877512 TCTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCT
581 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCC-
* *
2877577 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAGATGTTTCAAAAATCGTGAAAAA
645 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
*
2877642 TAGAAAACAAGTCGTCTTGCCCTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
710 TAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
*
2877707 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
775 CAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * *
2877772 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCACG--C-C
840 ATCGATCCACGGCTTGTGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGC
* * * * * * **
2877827 TGCTCGTTTCATCGGTTGGCTGAGGCATACGGAGTACATTCCCAGTCTAAGATCGAACTTGACCG
1 CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
** * * * *
2877892 ACAGTTGTGGTAAC-AGAATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCAT
66 AGGGTTGCGATAGCAAG-ATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCAT
* * ** * *
2877956 CCCGCCCCTCTGGCTGGCTGAGTGCTTGCACGCTTGATTCGTGGGTTGACTTAGGCATACGGAGT
130 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* *
2878021 TCATTCCCAGTCTAAGCTTACGGAGTTCATT-CCAGTCTAAGATCGGACCGGACCA-AGGGTTGC
195 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CAGAGGGTTGC
* * * * * **
2878084 GGCAGCACATTCTGGGCTCGGGCATGTGCTGCTGACGCATTTTTCTTCG-CTGTGACACCATCAC
259 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGT
* * * * *
2878148 CGAAGCATCACCGAAGAACTTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGT
323 CGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGT
* * * *
2878213 GTGCACACATGATGTGCAATGGGTGCTGGTACTGGGCCCTTATATTGGCCCCCCATCCCTCATCA
388 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
2878278 AACCTCGTGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
453 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
2878343 TTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTT
518 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
2878408 TGGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTGTACCAAGTTTGCTGCCAA
583 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG-GGCCAA
* * *
2878473 AACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAATTTGTGAAAAATA
647 AACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA
* * *
2878538 GAAAACGAGTTGTCTTGCGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
712 GAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
** *
2878603 AGCCATAAAAATTTCATTGGCA--CATAGAAATATGATGATGTGCCT------A---A--ACCCT
777 AGCCATAAAAATGGCATTGGCATGCA-A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCT
*
2878655 ATCGATCCACGGCTTGCT-CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCC
840 ATCGATCCACGGCTTG-TGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG-C
* *
2878718 CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTG
1 CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* * * * * * * **
2878783 AGGGTTGCGACAGTAGGATCGACAGCACGCAAAGGGGGACCCGGTTGATCCCCGGCTTATGCATC
66 AGGGTTGCGATAGCAAGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATC
* * * *
2878848 CTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTTGGGGGTTGACTTAGGCATACGGAGTT
131 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * *
2878913 CATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGGATC-GAACTGAGGGTTTCA
196 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACAGAGGGTTGCG
* **
2878977 ACAGCACATGCTATGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CTGGGGCACCATCGTC
260 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTC
* * *
2879041 GGAGCATCACCGGAGAACCTGACCGATGGCATTGGGGTTTCGACGATCGGAGGGGCCGGGGGGGG
324 GGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGG
* * * *
2879106 TGTGCGCACATGCTATGCGATAGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
387 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
2879171 AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAATTTACAGGTTTGCTGCCAGTAGCC
452 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
2879236 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
517 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * *
2879301 TTAGCTAAATTTTTTTGAGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTTGGGCCA
582 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGGCCA
* * * *
2879366 AAACACCTTCCAAAAAAATTTTAAAAAATCTCGAATCGCAAAAAGTTTCAAAAATCATGAAAAAT
646 AAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
2879431 AGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
711 AGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * * *
2879496 AAGCTATAAAGATGGCAATGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTA
776 AAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * *
2879561 TCGATCCACGGCTTGTGCATCCTGCCTCTCTGGTCGGCGTAGTGCCCGCCCGCCTG-CCGC
841 TCGATCCACGGCTTGTGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGC
* * *
2879621 CGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCTGTCTAAGATTGGACCGGACCG
1 CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* * * *
2879686 AGGGTTGCGATAGCAAGATTGGCAGCACGTAGAGGGGGACCCGATCGATCCTCGGCTTGTGCATC
66 AGGGTTGCGATAGCAAGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATC
* * * * * * *
2879751 CTGCCCCTCTAGTCGGCTGAGCACCCGTACGCTCGTTTCGTGGCTTGACTTAGGCATACAGAGTT
131 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* *
2879816 CATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACAG-GGGATTGCG
196 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACAGAGGG-TTGCG
* * *
2879880 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCAGGGCACCATCGTCG
260 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG
* * ** * * *
2879945 GAGCATCATCAGAGAAAGTGACCGACGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGCTGT
325 GAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGT
* *
2880010 GCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAA
390 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
2880075 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
455 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
2880140 AAAGTGTCTAAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
520 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
*
2880205 GCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAA
585 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-CCAAAA
* * *
2880270 CTCCTTCTGAAAAAATTTTAAAAAATGTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
649 CTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGA
* *
2880335 AAATAAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
714 AAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*
2880400 CCATAAAAATGGCATTGGCATGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCG
779 CCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * * **
2880465 ATCCACGGCTTGTGCATCCTGCCTCTCTGGCTGACGTACTTCTCGCTTGCCCGCCCGTC
844 ATCCACGGCTTGTGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG-C
* ** * * * ** * *
2880524 CGCTCATTTTGTCGGTTATCTTAGGCATGCGAAGTTCGTTCCCAGTCTAAGATCCAACCAGACTG
1 CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* ** * ** ** * *
2880589 AGGGTTGCGGTAGCAAGATCGATAGCACGTAGAGGGGGACCCGGCCGATCCTTGACTTGCGCACC
66 AGGGTTGCGATAGCAAGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATC
* * * * * * *
2880654 CCGCCCCTCTGACCGACTGAGCACCCGTACGCTTGTTTCATGGGTTGACTTAGGCATACTGAGTT
131 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * * * * *
2880719 CATTTCCAGCCTAAGCATACGGAGTTCATTCCTAGTCCAAGATAGGACCAGACCGAGGGTTACGA
196 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACAGAGGGTTGCGG
* * **
2880784 CAGCACATGCTGGGCTCAGGCATGTGCTGTTGTTGCATTTTTCTTCGTCGGGGCACCATCGTCGG
261 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGG
** * * * *
2880849 AGCATCGTCGGAGAACCTGACCGACGACATTGTGGTTCCGACGATCGGGGGGGTCAGGGGGTGTG
326 AGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTG
* * *
2880914 CGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCGTCAAAC
391 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
2880979 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTA
456 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * *
2881044 AAGTGTCTGAAATGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCAAGTTTCTAG
521 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
*
2881109 CTGAATTTTTATGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
586 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAC
* * * *
2881174 T-CTATTCGAAAAAATTTTAAAAAA-CTCAAACCGTAAAAAGTTT-GAAAATCGTGAAAAATAGA
650 TCCT-TCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGA
* * * * * *
2881236 AAACGAGTCATCATGCCATGAAACTTCACGTGAAGCCTTAAGGGTCCATTGTTTGAATTTACAAG
714 AAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
** *
2881301 CCATAAAAATGGCATTGGCACACATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
779 CCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * ** *
2881366 ATCCACGGCTCGCGCATCAC-GTCTCTCTAACCGACGTAGTGCCCGTCCGCCCGCCCGC
844 ATCCACGGCTTGTGCATC-CTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGC
* * * * * *
2881424 CTGCCCACTTGTTTCGTCAGTTCGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCA
1 C-GCTCA----TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
** * * * * * * *
2881489 GATGGAGGGTTACGACAGCAGGATTGGCAGCGCACAGTGGGGGACCCGA-CTGATCCCCGGCTCT
61 GACCGAGGGTTGCGATAGCAAGATCGGCAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCT-T
* ** * *
2881553 -CGCATCCCACCCCTCTGGTTGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATA
124 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* *
2881617 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGG
189 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACAGAGG
* * * * * *
2881682 GTTGTGGCAACACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCAGCA
254 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * * * * * *
2881747 TTGCCGGAGCATCGCCGGAGAGCCTAACCGGCGGCATTGGGGTTCCGATGAT---------CGGG
319 TCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
*
2881803 GGGTGTGGGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
384 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
2881868 ATCACACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
449 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
2881933 GCCATTAAAGTGTCTGAAATGGGGACCCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAG
514 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * ** *
2881998 TTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGACCACGTCTAAGAAGTTTTCGG
579 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGG
* * ** * * *
2882063 TCAAAAATATTTCTGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGGAA
643 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAA
* * *
2882128 AATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
708 AATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
2882193 TACAAGTCATAAAAATGGCATTGGCA--CATAGAAATATGAAGATGAGCCTAAACCCACCTACCA
773 TACAAGCCATAAAAATGGCATTGGCATGCA-A-AAATATGAAGATGTGCCTAAACCCACCTACCA
*
2882256 CCCTATCGATCCACGGCTTGTGCATCCTGTCTCTCTGGCCGGA-GTAGTGCCCGCCCGTCCGCCG
836 CCCTATCGATCCACGGCTTGTGCATCCTGTCTCTCTGGCC-GACGTAGTGCCCGCCCGCCCGCC-
2882320 CTTGC
899 C--GC
* * *
2882325 ACGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCGAACCGGATC
1 -CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
2882390 GAGGGTTGC
65 GAGGGTTGC
2882399 AGCAGCACAT
Statistics
Matches: 4005, Mismatches: 500, Indels: 133
0.86 0.11 0.03
Matches are distributed among these distances:
883 47 0.01
885 1 0.00
887 8 0.00
888 1 0.00
889 1 0.00
891 190 0.05
892 131 0.03
894 796 0.20
895 135 0.03
896 455 0.11
897 80 0.02
898 178 0.04
899 3 0.00
900 9 0.00
901 662 0.17
902 27 0.01
903 920 0.23
904 13 0.00
905 347 0.09
906 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
AGGGTTGCGATAGCAAGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATC
CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACAGAGGGTTGCGG
CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGG
AGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTG
CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACT
CCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
ACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGTGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGC
Found at i:2881648 original size:26 final size:26
Alignment explanation
Indices: 2881612--2881664 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2881602 GTTGACTTAG
*
2881612 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2881638 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2881664 G
1 G
2881665 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2883262 original size:26 final size:26
Alignment explanation
Indices: 2883225--2883277 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2883215 GCTGACTTAG
2883225 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
2883251 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2883277 G
1 G
2883278 ATTGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2884831 original size:904 final size:902
Alignment explanation
Indices: 2882350--2892464 Score: 9416
Period size: 902 Copynumber: 11.2 Consensus size: 902
2882340 GTTGGCTTAG
* * * * *
2882350 GCATACGGAGTTCATTCCCAGTTTAAGATCGAACCGGATCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * **
2882415 CTCGGGCATGTGTTGGTGCCGCATTTTCCTTCGTCGAGGCACCATCGTCGTAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * *
2882480 ACCTAACCGGCGGCATTGGGGTTC-CGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
2882543 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
2882608 ACCCCCTTAAAGAGCATTTAAGATTTTGCAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
2882673 TGGGACACTTTTTTCAGATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
2882738 TGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAA-TCATTCCGAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * ** *
2882802 ATTTTAAAAAATCTCGAATCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
456 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
2882867 GCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATCGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* ** *
2882932 TTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTCTCGATCCACGGCTTGCG
586 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
2882997 CATCCCGTCTCTCTGGTCGACGTAGTGCCCACCCGCCCGTCCGCCCACTCGTTTCGTCGGTTGGA
651 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * *
2883062 TTAGGGATACGGAGTTCATTCCCAGTCTAAGATCAGACCT-GACCGAGGGTTGCAGCAGCAGGAT
716 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACTGGACTGAGGGTTGCGGTAGCAGGAT
* * ** * * * * *
2883126 TGGCAGCACGCAGAGGGGGACCCGATCGA-CTCCCAGCCTGCGCATCCCGCCTCTTTGTCCGGCT
780 CGGCAGCACGCAGAGAGGGA-CCGGCCGATC-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC-
** * *
2883190 GAGTTCCCGCACGCTCGTTTCGTGGGCTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
842 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
2883251 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
2883316 CACCGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
* *
2883381 ACCTGACCGACGGCATTGGGGTTC-CGACGATCGAGGGGGCTGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
2883445 AGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
2883510 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA-CCATTAAAGTGACTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
2883574 GGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** **
2883639 TGTATGCCAACAAAAATACAAGGATCATTTCTACCAAGTTTGGGGCCAAAACTAGTTCC-AAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
2883703 ATTTTTAAAAAATCCCGAACCGTAGAAAGTTTCGACAATCGTGAAAAATAAAAAACGAGTCGTCT
456 A-TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * **
2883768 TGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATTAATTTACGGGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
**
2883833 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
585 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * *
2883898 GCATCCCGTCACTCTAGCTGGCTTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTCCATCAGTTGG
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * *
2883963 CTTAGGCATACAGAGTTCATTCCCAGTCTGAGATCGAACTGGACTGAGGGTTGCGGTAGTAGGAT
715 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACTGAGGGTTGCGGTAGCAGGAT
* * * *
2884028 CGGCAGCATGTAGAGAGGGACTCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACGA
780 CGGCAGCACGCAGAGAGGGAC-CGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCG-
* * * *
2884093 AGCACCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
843 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * **
2884153 GCATACGGAGTTCATTCGCAGTTTAAGATCAGATCGGACCGTGGGTTGTGGCAGCACATGCTTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** *
2884218 CTCGGGCATTTGCTGGTGCCGCATATTTCTTCGCCAAGGCACCAACGCCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
* *
2884283 ACCTGACCGACGGCATTGGGGTTCTAG-TGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
2884347 CGATAGGTGCTGGTACTTGGCTCTTATATTGGCCGCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
2884412 ACCCCCCTTAAAGAGCATTTGAGACTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAAA
261 A-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
2884477 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTGTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* **
2884542 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCACAACTCCTTTTGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
2884607 AATTTTAAAAAGTCCCGAACCGTAAAAAATTTCAAAAATCGTGAAAAATGGAAAAGGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
2884672 TACCATGAAACTTTACGTGAAGGCTTAAGGCAGCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
2884737 ATTGGCACATAGAAATATGAAGATGTGCCTAATCCCACCTACCACCCTATCAATCCACGGCTTGC
585 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
2884802 GCATCCCGTCCCTCTGACCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * ** * * *
2884867 CTTAGGCATACGGAATTCATTCCCAGTCCAAGATC-AGATTGGACCAAGGGTTGCTGCAGTAGGA
715 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACTGGACTGAGGGTTGCGGTAGCAGGA
* * * * * ** * *
2884931 TCGGTAGCATGGAGAGAGGGACCCGGCCGATCCCCAGCTTACGCATCCCGCCTGTCTAGCCGGGT
779 TCGGCAGCACGCAGAGAGGGA-CCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GGC
* * * *
2884996 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCGTACAGAGTTCATTCCCAGTCTAA
842 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
2885057 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACATACTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
2885122 CTCGGGCTTGTGCCGATGCCGTATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * **
2885187 ACCTGACCGACGGCATTGGGGTTC-CGATGATCGGGGGGGCCGGGGGGGCGTATGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCTCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* *
2885251 GTGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
2885316 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
2885381 TGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCAAGTTTTTTGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
2885446 GTGCATGCCGAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCGTT-CGAA
390 GTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAA
* * * *
2885509 AAAATTTTAAAAAA-CCTGAACCGTAAAAAATTT-AAAAATCATGAAAAGTAGAAAACGAGTCGT
453 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * * *
2885572 CTTGCCATGAAACTTCACATGATGGCTTAAGGGACCATTTTTTGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
2885637 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTC
583 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
2885702 GTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGGTTGTTTCATCGGTT
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * ** *
2885767 GGCTTCGGCATACGGAGTTCATTCCCAGTATAAGATC-AGACTAGACCAAGGGTTGCGATAGCAG
713 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACTGGACTGAGGGTTGCGGTAGCAG
* * * * * * * * * *
2885831 GATTGGCAGCCCACAGAGA-GGACCGGGTCGATCCCTGACTTTCACATCCCGCCTCTCTGGCCGA
777 GATCGGCAGCACGCAGAGAGGGACC-GGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* *
2885895 CTGAGCGCCCG-ACTGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCACC-GTC-AA
841 C-GAGCACCCGCAC-GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC-CCAGTCTAA
* * * * *
2885956 GGAT-C-GA----ATT---AAT-T----T-----------GATGGTTGTGGCAG-ACATGCT-AG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * * * *
2885994 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCTTCAAGGCACCATCACCAGAGAAT-ATTCGAAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCA-CCGGAG
** * * *
2886058 AACCTGACCGACGGCATTATGGTTCT-GGCGATCGGGGGAGTCGGGGGGTGTG-GCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * * *
2886121 GCGATTGGTGCTTGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
2886186 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
2886251 TAGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
2886316 GTGCATGCCAA-AACAAATACAAGGATCATGTCTTCCAGGTTTGGGGCCAAAACGCCTTCTGAAA
390 GTGCATGCCAACAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
2886380 AAATTTTAAAAAA-CCCGAACCGTGAAAAGTTT-GAAAATCGAGAAAAATAGAAAATGAGTCGTC
454 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
**
2886443 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGATATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*** *
2886508 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTG
584 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
2886573 CGCATCCTGCCTTTCTGGCCAGCGT--TG--TGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* ** ** * *
2886634 GCTTAGGCATACGTAGTTCATTCCCAGTCTAAGATC-AGACCAGACCAAGGGTTACGGTAGCAAG
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACTGGACTGAGGGTTGCGGTAGCAGG
* ** * * * *
2886698 ATCAGCAGCATACAGAGGGGGACTTGGCCGAACCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGC
778 ATCGGCAGCACGCAGAGAGGGAC-CGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * * * * * * * *
2886763 TAAGCGCCTGCCCGCTCATTTTGTCGGTCGGCTTAGGTATACGGAGTTCATTCCTAGTCTAA
842 -GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** ** * * * * * *
2886825 G-AT-CGGACCAGACCGAGGGTGGTGGCAG-C-AGGATCGGTAGCACACAGAGGG--G-GAC-CC
1 GCATACGG---AGTTC-A---T--TCCCAGTCTAAGATCGG-ACCAGACCGAGGGTTGCGGCAGC
** * * * * * * * * ** * * * *
2886882 A-AT-C-GATCCCCGACTTATGCAT-CTCGCC-C--CTCTGGTCGGCTGAGCACC-T-GCAC-GC
56 ACATGCTGGGCTCGGGCATGTGC-TGGT-GCCGCATTTTTCTTCGTCGGGGCACCATCGC-CGGA
* * ** ** ** * * ** *
2886937 TCGT-TTCGTG-G--GTTGACTTA-GGCATATGGAGTTCATTCCCAGTCTAAGATCGGATTGGAC
118 GCATCACCG-GAGAACCTGACCGACGGCAT-TGGGGTTC--T--C-G---ACGATCGG-GGGGGC
* * * * * * * *** * ***
2886997 CGAGGGTTGCGGCAGCACATGCTGGGTTCGGGAATGTGTTGGTGTCGTA-TT-TTTCTTCGTCGG
172 CGGGGGGTG-TGC-GCACATGAT--G-T-GCG-ATG-GGTGCTG--GTACTTGGCCCTT-ATATT
* * ** ** * * * * ** * *** * **
2887060 GGCACCAT-TGTCAGAGC-ATCGTCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
226 GGCCCCCTATCCCTCATCAAACCTCG-AGAA-CTCA-C-ACCCCCTTAAAG---AG-C-AT-TTG
* ***** ** * * * * **** * *
2887123 GGGGCCGAGGGGGGTGTG-GGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATAT-TGG
281 AGATTTTA--CAGGTTTGCTGC-CA-G-T-AGCCATTAAAG-T-GT-C-T-G-----AAATGGGG
* * * **** ** * * *
2887186 CCACCTATCTCTCATCAAACCGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA-C--A
330 ACA-CT-T-T-T-TTCAAA--TG-G---TCACAAAATCTTGTACA-C-TTCGAGTTTTTAGCTGA
** ** * ** ** * ** * ** * *
2887248 GGTTTGCTGT-CGGTAGCCATTAAAGTGTCTGAAATAGGGA-CATTTTTTTCAA--AT-GGTCAC
382 ATTTTTTTGTGC-AT-GCCAACAAA---AAT-ACA-A-GGATCACGTCTACCAAGTTTGGGGC-C
** * **
2887308 AAAATCTTATACACTT-CGAGTTTTTAGCTGAATTTTTTTGTACGTGCCAAAAAAAAAACAAGGA
438 AAAA-C---T-C-CTTCCGA------A----AA---AATT-T---T------AAAAAATC-CCGA
* * ** *
2887372 TCATGTCTACCAAGTTTGGGGCCAAAA-CGCCTTCCGAAAAAATTTTAAAAAAACCCGAACCGCA
473 AC-CG--TAAAAAGTTT----CAAAAATCG---T--G-AAAAA---T------------A--G--
* * *
2887436 AAAAGTTTCGAAAATCGTGAAAAATAGAAAATGAGACGTCTTGCCATGAAACTTCACGCGAAGCC
506 AAAA----CG--AGTCGT---------------------CTTGCCATGAAACTTCACGTGAAGGC
**
2887501 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
544 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT
* * * *
2887566 GTGCCAAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGACGT
609 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* *
2887631 AGTGCCCGCCCGCTCGCCCGCTCGCTCGTTTCGTCGGTTCGG-TTAGGCATACGGAGTTCATTCC
674 AGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT-GGCTTAGGCATACGGAGTTCATTCC
* * * * * * * * * * * * * *
2887695 CTA-TCTAAGATTGGACCGGATTGACGATTGCAGTAGCAAGACCGACGGGACACAGAGGGGGACC
738 C-AGTCTAAGATCGAACTGGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGAGGGA-C
*** * * ** ** *
2887759 CAATC-ATTCCCCGGCTTGCGCATCCCACCCCTCTAGCCTACTGAGTGCCCGCACGCTCGTTTCA
801 CGGCCGA-TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC-GAGCACCCGCACGCTCGTTTCG
* *
2887823 TGGGTTGACTTAGGCAAACGGGGTTCATTCCCAGTCTAA
864 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
2887862 GCATCCGAAGTTCATTCCTAGTCTAAGATCGGACCAGACCAAGGGTTGCGGAAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
2887927 CTCAGGCATGTGCCCGGTTGCCACACTTGTTCTTCCG-CCGGGCACCCATCGCCGGAAG-ATTCA
66 CTCGGGCATGTG-CTGG-TGCCGCA-TTTTTCTT-CGTCGGGGCA-CCATCGCCGG-AGCA-TCA
* * * * ** * *
2887990 TCAGAGAACCTGACCGAC-GCACTAGGGTTC-CGGTGATC-GTGGGGCCGGGGCGTGTGCGCACA
124 CCGGAGAACCTGACCGACGGCATTGGGGTTCTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACA
* * * * *
2888052 AGATGTGCGATGGGTGC-GTTACTT-GCCCGTATAGTGGCCCCCTATCCCTCATCAAACCTTGGA
189 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGA
2888115 GAACTCACACCCCCTT-AAGAGCATTTGAGAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
253 GAACTCACACCCCCTTAAAGAGCATTTGAG-ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * * *
2888179 GTCTAAAAT-GGGACACTTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGATTTTTTGGCTG
317 GTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* *
2888243 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CAAGTTTGGAGCAAAAACTCC
381 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* *
2888307 TTCCGAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
446 TTCCG-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
* *
2888372 CGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCA
510 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* ** * *
2888437 TAAAAATGGCTTTGGCATGCAGAAATATGAAGATGTGCCTAAACCCGCCGACCACCCTATCGATC
575 TAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * *
2888502 CACGGCTTGCACATCCCGTCTCTCTAGCCGGCATAGT----GCCCGTCCGCCCGCCCGCTCGGTT
640 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTT
* *
2888563 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCG
705 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACTGAGGGTTGCG
* * * * * ** *
2888628 ATAGCAGGATCGGCAGCACACAGTGGGGGACCTGGCCGATCCTCGAATTACGCATCCCGCCCCTC
770 GTAGCAGGATCGGCAGCACGCAGAGAGGGACC-GGCCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * * * *
2888693 TGGCCGGTTGAGCACACGCACGCTTTGTTTTGTGGGTTGACTTAGGTATACGGAGTTCATTCCTA
834 TGGCCGG-CGAGCACCCGCACGC-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
2888758 GTCTAA
897 GTCTAA
*
2888764 G-AT-C--AG---A----C---C--AGAT----------CGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
2888803 CTCAGGCATGTGTTGGTGCTGCATTTTTTTTCGTCGGGGCACCATCGCCGGAG-A--ACC---TA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * *
2888862 ACC-G---G-TGGCATTGGGGTTCT-AACGATCGGGGGGG-TGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * * *
2888920 CAATGGGTTCGGGTACTTGGCCCTTATATTGGCCCCCTATCTCC-CATCAAACCTAGAGACCTCA
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC-CCTCATCAAACCTCGAGAACTCA
*
2888984 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
2889049 TGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAA-TTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * ** *
2889113 GTGCATGCCAACAAAAATACAAGGATCACATCTCCCAAGTTTGTGGCCAAAACAACTTCTGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
2889178 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTAGTCT
455 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
2889243 TGCCATGAAACTTCACGTAAAGGCTTAAGGGACGATTGTATGAATTTACAAGCTATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** *
2889308 ATTAGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
585 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * **
2889373 GCATCCCGTCTCTCTGGCCGACGTAGTG--C-CCC-CCCGCCCGTCTGCTCTTTTCGTCGACTGG
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * ** * * * *
2889434 CTTAGGCATACGGAGTTCATTCACAGTCTAAGATCGGA-TCGAACCAAGTGATGCGATAGCAAGA
715 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACT-GGACTGAGGGTTGCGGTAGCAGGA
* * * * * * ** *
2889498 TCGACAGCAC-CTAGAGGGGGACCCGGTCGATCCCTGACTTGCGCATCCTGCCCCAATGGCTGGC
779 TCGGCAGCACGC-AGAGAGGGA-CCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
2889562 TGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAA
842 -GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *** * * *
2889624 GCACACGGAGTTCATTCCCAGTCTAAGATCGGATTGGATCAAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * * *
2889689 CTCTAGCATGTGCTGGTGCCGCATTTTTCTTC-ACTAGGGCACCATCGTCAGAGCATCACCGAAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCACCGGAG
* * * * *
2889753 AACCTGACCGGCGGCATTGGGGTTC-C-AGGGATC-GGGGGGTCGGGAGGGTATGCGCAAATGAT
130 AACCTGACCGACGGCATTGGGGTTCTCGA-CGATCGGGGGGGCCGGG-GGGTGTGCGCACATGAT
*
2889815 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
2889880 CACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTAA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
2889945 AATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
2890010 TTGTGCTTGCGAACAAAAATACAGGGATCACGTCTA-CATAGTTTGGGACCAAAACT-CTTTCGA
388 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA-AGTTTGGGGCCAAAACTCCTTCCGA
* * * * *
2890073 AACAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCG
452 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
2890138 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATCGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
2890203 GGCATTGGCACACAAAAATATGAAGATATACCTAAACCCACCTACCACCCTATCGATCCACGGCT
582 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
2890268 TGCGCATCCCGTCTCTATGGCCGGCGTAGTGCCCGCCCACCGGCCCGCCCGCTCGTTTCGTC-GT
647 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * *
2890332 TGGCTGTGAGG-ATAC-GA-CTCATGTCCCCAGTCTAAGATCGCGACTAGACTGA-GGTTGCGGG
712 TGGCT-T-AGGCATACGGAGTTCAT-T-CCCAGTCTAAGATCG-AACTGGACTGAGGGTTGC-GG
* * * * * * *
2890393 TTAGCAGGGATCGACAGCACGC--AGAGGGACCAGACGAACCCCTG-TTGCGCATCACGCCTCTC
771 -TAGCA-GGATCGGCAGCACGCAGAGAGGGACCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * * *
2890455 TCGCCAGCCTGA-CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAATTCATTCCCA
834 TGGCC-GGC-GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
2890519 GTCTAA
897 GTCTAA
* * * *
2890525 GCATACGGAGTTCAATCCTAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
2890590 CTC--G---G-GCT-GT-----ATTTTTCTTCGTCGGGG---CA----C----CATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
* ** * * *
2890632 ACCTGATCGGTGGCATTGGGGTTC-CGACGATCGAGGGAG-CGGGGGGTGTGCACACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
2890695 CGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAG-ACTTCA
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC-TCA
* *
2890759 AACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
2890824 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAATTTTTGGCTG-ATTGTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTT
* *
2890888 TGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCAGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* ** ** ** * *
2890953 AAATTTAAAAAAATCCAAAACCACAAAAAGTTTTGAAAATCATGAAAAAGAGAAAACGAGTCGTC
454 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
2891018 TTGCCATGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
**
2891083 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-
584 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
2891147 ---A---------------C-GC--A-T-----CCCG---TCCCGCCCGCTCATTTCATCGGTTG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * *
2891182 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGATTGAGGGTTGCAGCAGCAGCA
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACTGAGGGTTGCGGTAGCAGGA
* * * * * **
2891247 TCGACAGCACGCAAAGAGGGACCCGGCCGGTCCCCAGCTTGTGCATCCTACCCCTCTGGCCGGCC
779 TCGGCAGCACGCAGAGAGGGA-CCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG-C
* * *
2891312 GAGCACCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
842 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
2891373 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
2891438 CTCGGGAATGTGTTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGTCAGACCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * *
2891503 ACCTGATCGATGGCATTGGGGTTC-CGACGATC-AGGGGGCCGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
2891566 CGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
**
2891631 ACCCCCTTAAAGAGCATTTGAGAAATTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
2891696 GGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCAAGTTTTTAGCTGAAGTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
2891761 TGCACGCCAACAAAAATACAAGGATCACGTCTACCAAATGTGGGGCCAAAACTCCTTCTGAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** * *
2891826 ATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATTAAAAATAGAAAACGAGTCGTCTT
456 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * * *
2891891 CCCGTGAAACTTCACGTGAAGGCTTAATGGACCATTTTATGAATTTACAAGCCAAAAAAATGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * *
2891956 TTGGTTCACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACAGCTTGCG
586 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * *
2892021 CATCTCGTCTCTCTGGCCGGCGTAGT----GCCCTCCCGCCTGCCCACTAGTTTCATCAGTTGGC
651 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * *
2892082 TTAGGCATACGGAGTTCATTCCCAGTCTAAGGTTGGACCGGACTGAGGGTTGCAGCT-GCAGGAT
716 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACTGAGGGTTGC-GGTAGCAGGAT
* * * * * * *
2892146 TGGTAGCACGTAGAGAGGGACCCGACCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCTGGCTG
780 CGGCAGCACGCAGAGAGGGA-CCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC-G
* *
2892211 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTCCATTCCCAGTTTAA
843 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
2892271 GCATACGGAGTTCATTCCCAATCTAAGATCGAACTAAACCGAGGATTG-GGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG-CAGCACATGCTGG
* * * **
2892335 GCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGC-CCATCGTCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAG
* * * * *
2892399 AACTTAACCGGCGGTATTGGGGTT-TCGACGATCGGGGGGGCCGGGGGGTGTTCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
2892463 GC
195 GC
2892465 AATGAGTGTT
Statistics
Matches: 7583, Mismatches: 1181, Indels: 903
0.78 0.12 0.09
Matches are distributed among these distances:
844 14 0.00
845 4 0.00
846 20 0.00
847 56 0.01
848 143 0.02
849 4 0.00
850 4 0.00
853 1 0.00
854 2 0.00
855 3 0.00
856 1 0.00
858 2 0.00
859 1 0.00
860 58 0.01
861 423 0.06
862 142 0.02
863 51 0.01
864 5 0.00
865 4 0.00
866 100 0.01
867 77 0.01
868 13 0.00
869 10 0.00
870 442 0.06
871 485 0.06
872 102 0.01
873 18 0.00
874 18 0.00
875 3 0.00
876 43 0.01
877 240 0.03
878 226 0.03
879 5 0.00
880 1 0.00
882 2 0.00
885 3 0.00
886 71 0.01
887 6 0.00
888 12 0.00
889 17 0.00
890 9 0.00
891 5 0.00
892 6 0.00
893 15 0.00
894 4 0.00
895 19 0.00
896 14 0.00
897 81 0.01
898 720 0.09
899 56 0.01
900 25 0.00
901 640 0.08
902 1112 0.15
903 81 0.01
904 858 0.11
905 253 0.03
906 7 0.00
907 16 0.00
908 12 0.00
909 4 0.00
910 6 0.00
913 1 0.00
914 1 0.00
915 2 0.00
916 3 0.00
917 2 0.00
918 7 0.00
919 1 0.00
920 1 0.00
921 5 0.00
923 2 0.00
924 1 0.00
925 1 0.00
926 6 0.00
928 2 0.00
930 4 0.00
931 5 0.00
932 5 0.00
934 2 0.00
935 5 0.00
936 1 0.00
937 1 0.00
938 1 0.00
939 1 0.00
940 8 0.00
941 15 0.00
942 4 0.00
943 12 0.00
944 7 0.00
945 3 0.00
946 9 0.00
947 3 0.00
948 1 0.00
949 3 0.00
950 3 0.00
951 5 0.00
952 1 0.00
954 1 0.00
955 1 0.00
956 5 0.00
957 2 0.00
959 2 0.00
960 7 0.00
962 3 0.00
963 4 0.00
964 7 0.00
966 1 0.00
970 1 0.00
972 6 0.00
973 2 0.00
974 5 0.00
975 1 0.00
977 9 0.00
981 3 0.00
982 4 0.00
985 3 0.00
986 4 0.00
987 7 0.00
989 6 0.00
990 7 0.00
991 7 0.00
992 3 0.00
993 8 0.00
994 2 0.00
995 16 0.00
996 8 0.00
997 1 0.00
998 1 0.00
999 1 0.00
1001 5 0.00
1002 2 0.00
1003 1 0.00
1004 3 0.00
1005 8 0.00
1006 4 0.00
1010 1 0.00
1011 1 0.00
1012 6 0.00
1013 2 0.00
1014 1 0.00
1015 5 0.00
1016 1 0.00
1017 1 0.00
1018 7 0.00
1019 4 0.00
1020 3 0.00
1021 1 0.00
1022 1 0.00
1024 192 0.03
1025 235 0.03
1026 199 0.03
1027 181 0.02
1028 176 0.02
1029 147 0.02
1030 236 0.03
1031 219 0.03
1032 212 0.03
1033 266 0.04
1034 131 0.02
1035 127 0.02
1036 162 0.02
1037 311 0.04
1038 202 0.03
1039 168 0.02
1040 632 0.08
1041 209 0.03
1042 135 0.02
1043 116 0.02
1044 81 0.01
1045 98 0.01
1046 94 0.01
1047 117 0.02
1048 656 0.09
1049 309 0.04
1050 112 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
ACCTGACCGACGGCATTGGGGTTCTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACTGAGGGTTGCGGTAGCAGGATC
GGCAGCACGCAGAGAGGGACCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCGAGC
ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:2885563 original size:26 final size:26
Alignment explanation
Indices: 2885507--2885563 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
2885497 ACTCCGTTCG
* **
2885507 AAAAAATTTTAAAAAACCTGAACCGT
1 AAAAAATTTTAAAAAACATGAAAAGT
*
2885533 AAAAAA-TTTAAAAATCATGAAAAGT
1 AAAAAATTTTAAAAAACATGAAAAGT
*
2885558 AGAAAA
1 AAAAAA
2885564 CGAGTCGTCT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
25 20 0.77
26 6 0.23
ACGTcount: A:0.61, C:0.09, G:0.09, T:0.21
Consensus pattern (26 bp):
AAAAAATTTTAAAAAACATGAAAAGT
Found at i:2886904 original size:159 final size:159
Alignment explanation
Indices: 2886608--2887013 Score: 481
Period size: 159 Copynumber: 2.6 Consensus size: 159
2886598 TGTGCCCGCC
* *
2886608 CGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGTAGTTCATTCCCAGTCTAAGATCAGA
1 CGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * **** *
2886673 CCAGACCAAGGGTTACGGTAGCAAGATCAGCAGCATACAGAGGGGGACTTGGCCGAACCCCGGCT
66 CCAGACCGAGGGTTGCGGCAGCAAGATCAGCAGCACACAGAGGGGGACCCAACCGAACCCCGACT
*
2886738 TGCGCATCCCGCCCCTCTGG-CTGGCTAAG
131 TACGCATCCCGCCCCTCTGGTC-GGCTAAG
* * * * *
2886767 CGCCTGCCCGCTCATTTTGTCGGTCGGCTTAGGTATACGGAGTTCATTCCTAGTCTAAGATCGGA
1 CGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * * *
2886832 CCAGACCGAGGGTGGTGGCAGCAGGATCGGTAGCACACAGAGGGGGACCCAATCGATCCCCGACT
66 CCAGACCGAGGGTTGCGGCAGCAAGATCAGCAGCACACAGAGGGGGACCCAACCGAACCCCGACT
* * *
2886897 TATGCATCTCGCCCCTCTGGTCGGCTGAG
131 TACGCATCCCGCCCCTCTGGTCGGCTAAG
* * * * *
2886926 CACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGA
1 CGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
***
2886991 TTGGACCGAGGGTTGCGGCAGCA
66 CCAGACCGAGGGTTGCGGCAGCA
2887014 CATGCTGGGT
Statistics
Matches: 204, Mismatches: 42, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
159 203 1.00
160 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (159 bp):
CGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
CCAGACCGAGGGTTGCGGCAGCAAGATCAGCAGCACACAGAGGGGGACCCAACCGAACCCCGACT
TACGCATCCCGCCCCTCTGGTCGGCTAAG
Found at i:2891377 original size:26 final size:26
Alignment explanation
Indices: 2891347--2891399 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2891337 GTTGACTTAG
* *
2891347 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2891373 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2891399 G
1 G
2891400 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2891670 original size:871 final size:876
Alignment explanation
Indices: 2888740--2892464 Score: 4157
Period size: 898 Copynumber: 4.2 Consensus size: 876
2888730 TGACTTAGGT
* * * *
2888740 ATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGATCGAGGGTTGCAGCAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
*
2888805 C-AGGCATGTGTTGGTGCTGCATTTTT-TTTCGTCGGGGCACCA---TCG-------CCGGAGAA
66 CGA-GCATGTGTTGGTGCCGCATTTTTCTTT-GTCGGGGCACCATCGTCGACCATCACCGGAGAA
* ** ** *
2888858 CCTAACCGGTGGCATTGGGGTTCTAACGATCGGGGGGGTGGGGGGTGTGCGCACATGATGTGCAA
129 CCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* * *
2888923 TGGGTTCGGGTACTTGGCCCTTATATTGGCCCCCTATCTCC-CATCAAACCTAGAGACCTCACAC
194 TGGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTATC-CCTCATCAAACCTTGAGAACTCACAC
2888987 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
* * * *
2889052 GGACACCTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAATTTTTTGTGC
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTGTGC
* ** * **
2889117 ATGCCAACAAAAATACAAGGATCACATCTCCCAAGTTTGTGGCCAAAACAACTTCTGAAAAAATT
388 ATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
* *
2889182 TTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTAGTCTTGCC
453 TTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * * *
2889247 ATGAAACTTCACGTAAAGGCTTAAGGGACGATTGTATGAATTTACAAGCTATAAAAATGGCATTA
518 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
2889312 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCAT
583 GCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT----A-
* * * **
2889377 CCCGTCTCTCTGGCCGACGTAGTGCCCCCCCGCCCGTCTGCTCTTTTCGTCGACTGGCTTAGGCA
643 --CG--TCTAT-GCCG-C--AGT----CCCCG-CC--C-GCTCATTTCATCGGTTGGCTTAGGCA
* * ** * * * *
2889442 TACGGAGTTCATTCACAGTCTAAGATCGGA-TCGAACCAAGTGATGC-GATAGCAAGATCGACAG
692 TACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACTGAGGGTTGCAGACAGCAGGATCGACAG
* * * * ** * * *
2889505 CAC-CTAGAGGGGGACCCGGTCGAT-CCCTGACTTGCGCATCCTGCCCCAATGGCTGGCTGAGCG
756 CACGC-AGAGAGGGACCCGGCCGATCCCCAG-CTTGCGCATCCTACCCCTCTGGCCGGCCGAGCA
* * *
2889568 CCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGC
819 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* *** * * *
2889626 ACACGGAGTTCATTCCCAGTCTAAGATCGGATTGGATCAAGGGTTACGGCAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * ** * * *
2889691 CTAGCATGTGCTGGTGCCGCATTTTTC-TTCACTAGGGCACCATCGTCAGAGCATCACCGAAGAA
66 CGAGCATGTGTTGGTGCCGCATTTTTCTTTGTC-GGGGCACCATCGTC-GACCATCACCGGAGAA
* * * * *
2889755 CCTGACCGGCGGCATTGGGGTTCC-AGGGATCGGGGGGTCGGGAGGGTATGCGCAAATGATGTGC
129 CCTGACCGGTGGCATTGGGGTTCCGA-CGATCGGGGGGCCGGG-GGGTGTGCGCACATGATGTGC
* * *
2889819 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACA
192 GATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* *
2889884 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTAAAATG
257 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
* *
2889949 GGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
322 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTG-ATTTTTTTGT
* * * * * *
2890014 GCTTGCGAACAAAAATACAGGGATCACGTCT-ACATAGTTTGGGACCAAAACTCTTTC-GAAACA
386 GCATGCCAACAAAAATACAAGGATCACGTCTAACA-AGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * *
2890077 ATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTT
450 ATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
2890142 GCCATGAAACTTCACGTGAAGGCTTAAGGGACGATCGTATGAATTTACAAGCCATAAAAATGGCA
515 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
2890207 TTGGCACACAAAAATATGAAGATATACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
580 TTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT---
* *
2890272 CATCCCGTCTCTATGGCCGGCGTAGTGCCCGCCCACCGGCCCGCCCGCTCGTTTCGTC-GTTGGC
642 -A---CG--TCTAT-GCC-GC--AGT----------C--CCCGCCCGCTCATTTCATCGGTTGGC
* * * **
2890336 TGTGAGG-ATAC-GA-CTCATGTCCCCAGTCTAAGATCGCGACTAGACTGA-GGTTGCGGGTTAG
685 T-T-AGGCATACGGAGTTCAT-T-CCCAGTCTAAGATCG-GACTGGACTGAGGGTTGC-AGACAG
* * * *
2890397 CAGGGATCGACAGCACGC--AGAGGGA-CCAGACGAACCCCTG-TTGCGCAT-C-ACGCCTCTCT
744 CA-GGATCGACAGCACGCAGAGAGGGACCCGGCCGATCCCCAGCTTGCGCATCCTAC-CC-CTCT
* * * * * *
2890456 CGCCAGCCTGA-CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAATTCATTCCCAG
806 GGCCGGCC-GAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
2890520 TCTAAGC
870 TCTAAGC
* * * *
2890527 ATACGGAGTTCAATCCTAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* *
2890592 C--G---G-GCT-GT-----ATTTTTCTTCGTC-GGG-------G-C-ACCATCACCGGAGAACC
66 CGAGCATGTGTTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGTCGACCATCACCGGAGAACC
* * *
2890635 TGATCGGTGGCATTGGGGTTCCGACGATCGAGGGAG-CGGGGGGTGTGCACACATGATGTGCGAT
131 TGACCGGTGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
*
2890699 GGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAG-ACTTCAAACC
195 GGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC-TCACACC
* *
2890763 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGG
259 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
* *
2890828 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAATTTTTGGCTGATTGTTTTTGTGC
324 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATT-TTTTTGTGC
*
2890893 ATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCAGAAAAAATT
388 ATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
* * * ** *
2890958 TAAAAAAATCCAAAACCACAAAAAGTTTTGAAAATCATGAAAAAGAGAAAACGAGTCGTCTTGCC
453 TTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
2891023 ATGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
518 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
2891088 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACG-C-
583 GCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGTCT
*
2891151 AT-CC-C-GT-CCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCT
648 ATGCCGCAGTCCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * *
2891212 AAGATCGGACTGGATTGAGGGTTGCAG-CAGCAGCATCGACAGCACGCAAAGAGGGACCCGGCCG
713 AAGATCGGACTGGACTGAGGGTTGCAGACAGCAGGATCGACAGCACGCAGAGAGGGACCCGGCCG
* * *
2891276 GTCCCCAGCTTGTGCATCCTACCCCTCTGGCCGGCCGAGCACCCGCACGCTTGTTTCATGGGTTG
778 ATCCCCAGCTTGCGCATCCTACCCCTCTGGCCGGCCGAGCACCCGCACGCTCGTTTCATGGGTTG
*
2891341 ACTTAGGCATACGGAGTTCATTCCTAGTCTAAGC
843 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * *
2891375 ATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTAGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* *
2891440 CGGGAATGTGTTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGTCAGACCATCACCGGAGAAC
66 CGAGCATGTGTTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGTC-GACCATCACCGGAGAAC
* * *
2891505 CTGATCGATGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
130 CTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* *
2891570 GGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
195 GGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
** *
2891635 CCTTAAAGAGCATTTGAGAAATTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
260 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGG
* *
2891700 ACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCAAGTTTTTAGCTGAAGTTTTTTGTGCA
325 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTG-ATTTTTTTGTGCA
* * * *
2891765 CGCCAACAAAAATACAAGGATCACGTCTACCAAATGTGGGGCCAAAACTCCTTCTGAAAAAATTT
389 TGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
*** * * * *
2891830 TAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATTAAAAATAGAAAACGAGTCGTCTTCCCG
454 TAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
2891895 TGAAACTTCACGTGAAGGCTTAATGGACCATTTTATGAATTTACAAGCCAAAAAAATGGCATTGG
519 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** *
2891960 TTCACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACAGCTTGCGCATC
584 CACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC--CA-C--G-GC-T-
* * * *
2892025 T-CGTCTCTCTGGCCGGCGTAGTGCCCTCCCGCCTGCCCACTAGTTTCATCAGTTGGCTTAGGCA
641 TACG--TCTAT-GCC-GC--AGT---C-CCCGCC--CGCTC-A-TTTCATCGGTTGGCTTAGGCA
* * * * * **
2892089 TACGGAGTTCATTCCCAGTCTAAGGTTGGACCGGACTGAGGGTTGCAG-CTGCAGGATTGGTAGC
692 TACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCAGACAGCAGGATCGACAGC
* * * ** * *
2892153 ACGTAGAGAGGGACCCGACCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCACCC
757 ACGCAGAGAGGGACCCGGCCGATCCCCAGCTTGCGCATCCTACCCCTCTGGCCGGCCGAGCACCC
* * *
2892218 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTCCATTCCCAGTTTAAGC
822 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * *
2892273 ATACGGAGTTCATTCCCAATCTAAGATCGAACTAAACCGAGGATTG-GGACAGCACATGCTGGGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG-CAGCACATGCTGGGC
* * **
2892337 TCGAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGC-CCATCGTCGGAGCATCGTCGGAGAA
65 TCGAGCATGTGTTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGTC-GACCATCACCGGAGAA
* * * * * *
2892401 CTTAACCGGCGGTATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTTCGCACATGATGTGC
129 CCTGACCGGTGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
2892465 AATGAGTGTT
Statistics
Matches: 2448, Mismatches: 274, Indels: 222
0.83 0.09 0.08
Matches are distributed among these distances:
844 14 0.01
845 4 0.00
846 20 0.01
847 55 0.02
848 142 0.06
849 7 0.00
850 3 0.00
853 1 0.00
854 2 0.00
855 2 0.00
860 14 0.01
861 3 0.00
863 1 0.00
865 2 0.00
867 2 0.00
868 2 0.00
869 1 0.00
870 4 0.00
871 471 0.19
872 4 0.00
873 2 0.00
874 2 0.00
876 6 0.00
877 244 0.10
878 229 0.09
879 6 0.00
880 1 0.00
881 2 0.00
882 1 0.00
884 2 0.00
885 1 0.00
886 89 0.04
887 1 0.00
888 3 0.00
889 11 0.00
890 3 0.00
894 8 0.00
895 3 0.00
896 5 0.00
897 91 0.04
898 697 0.28
899 56 0.02
900 7 0.00
901 133 0.05
902 42 0.02
903 20 0.01
904 10 0.00
905 14 0.01
906 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (876 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
CGAGCATGTGTTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGTCGACCATCACCGGAGAACC
TGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
AAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGTCTATG
CCGCAGTCCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
ATCGGACTGGACTGAGGGTTGCAGACAGCAGGATCGACAGCACGCAGAGAGGGACCCGGCCGATC
CCCAGCTTGCGCATCCTACCCCTCTGGCCGGCCGAGCACCCGCACGCTCGTTTCATGGGTTGACT
TAGGCATACGGAGTTCATTCCCAGTCTAAGC
Found at i:2892297 original size:26 final size:26
Alignment explanation
Indices: 2892245--2892297 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2892235 GTTGACTTAG
* *
2892245 GCATACGGAGTCCATTCCCAGTTTAA
1 GCATACGGAGTCCATTCCCAATCTAA
*
2892271 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTCCATTCCCAATCTAA
2892297 G
1 G
2892298 ATCGAACTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAATCTAA
Found at i:2893373 original size:26 final size:26
Alignment explanation
Indices: 2893344--2893396 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2893334 GTTGACTTAG
*
2893344 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2893370 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2893396 G
1 G
2893397 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2894277 original size:26 final size:26
Alignment explanation
Indices: 2894248--2894298 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
2894238 TGACTTAGGA
2894248 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
2894274 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
2894299 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:2894390 original size:901 final size:901
Alignment explanation
Indices: 2892637--2894739 Score: 3084
Period size: 901 Copynumber: 2.3 Consensus size: 901
2892627 GAGGGGCCGA
*
2892637 GGGGGTTTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
1 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
2892702 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAT
66 TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCA-
2892767 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
130 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * ** *
2892832 GAGTTTTGAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAGGGATCACATCTGCCAAGTTTG
195 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTG
* ** *
2892897 GGGCCAAAACTCTATTTTTAAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCG
260 GGGCCAAAACTC---CTTTCGAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCA
* * * *
2892962 TGAAAAATAAAAAAGGAGTCGTCTTGCCGTGAAACTTTACGTGAAGGCTTGAGGGACCATTGTAT
322 TGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* ** * * *
2893027 GAGTTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGGCTAAACCCACCTA
387 GAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACATA
* *
2893092 CCACCCTATCGATCCACGGCTTGGGCATCCCATCTCTCTAACCGACGTAGTGCCCGCCCGCCCAC
452 CCACCCTATCGATCCACGACTTGCGCATCCCATCTCTCTAACCGACGTAGTGCCCGCCCGCCCAC
* * * ** * * *
2893157 CCGCCTGCTCGTTTCGTCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTGTAGGATTAGACTA
517 CCACCCGCTCGTTTCGTCGATTGGCTTAGGCATACAGAGATCATTCCCAGCCTAAGATCAGACCA
* * * * *
2893222 GATGGAGGGTTGCGGTAGCAGGATCGATAGTACGTAGAGAGGGACCCGATTGATCCCCGGCTTAC
582 GATCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGAGGGACCCGATCGATCCCCGGCTTAC
* * * * * *
2893287 GGATCCCATCCCACTGGCCGGCTGAGCGCCTGCACACTCGTTTCATGGTTGACTTAGGCATATGG
647 GCATCCCATCCCACTGGCCGGCTGAGCACCCGCACACTCGGTTCATGGTTGACTTAGGAATACGG
2893352 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTT
712 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTT
* * *
2893417 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGACGCATTTTTCTTCGTCGGGGCACCATCA
777 GCGGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGACGCATTTTTCTTCGTCGAGGCACCATCA
* * * * * *
2893482 CCGGAGCATCGCCGGAGAACTTGTCCGGCAACATTGGGGTT-CGACGATCGGGAGGACTG
842 CCGGAGCAACACCGGAGAACCTGACAGGCAACATTGGGGTTCCGACGATCGGGAGGACGG
* *
2893541 GGGGGTGTGCGCACATGACGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
1 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
2893606 TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAG
66 TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAG
* * *
2893671 GAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
131 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
2893736 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGATTGG
196 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGG
*** **
2893801 GGCCAAAACTCCTTTCGAAGAAATTTTAAAAAATCTTGAACCACAAAAAGTTTTGAAAATCATGA
261 GGCCAAAACTCCTTTCGAA-AAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGA
* *
2893866 ACAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
325 AAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
*
2893931 TTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATTTGCCTAAACCCACATACCA
390 TTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACATACCA
* * ** **
2893996 CCCTATCGATCCACGACTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCA
455 CCCTATCGATCCACGACTTGCGCATCCCATCTCTCTAACCGACGTAGTGCCCGCCCGCCCACCCA
* *
2894061 CCCGCTCGTTTCGTCTG-TTGGCTTAGGCATACAGAGATCATTCCCAGCCTAAGATCGGACCGGA
520 CCCGCTCGTTTCGTC-GATTGGCTTAGGCATACAGAGATCATTCCCAGCCTAAGATCAGACCAGA
* * * * * ** *
2894125 TCGAGTGTTGCGGCAGCAGGATC-AGCAGCACGTCGAGGGGGACTCGGTCGATCCTTGGCTTGCG
584 TCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGTAGAGAGGGACCCGATCGATCCCCGGCTTACG
* * *
2894189 CATCCC-TACCCTCTGGCCGGCTGAGCACCCGCACGCTCGGTTCGTGGGTTGACTTAGGAATACG
648 CATCCCAT-CCCACTGGCCGGCTGAGCACCCGCACACTCGGTTCAT-GGTTGACTTAGGAATACG
*
2894253 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG-
711 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGT
* * *
2894317 TGCGGCAGCACATGCTAGGCTCAGGCATGTGTTGGTGTCGCATTTTTCTTCGTTGAGGCACCATC
776 TGCGGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGACGCATTTTTCTTCGTCGAGGCACCATC
* ** * * *
2894382 ATCGGAGCAACACCGGAGAACCTGACAGGCGGCATTGGGGTTCCGATGATCGGGGGGTCGG
841 ACCGGAGCAACACCGGAGAACCTGACAGGCAACATTGGGGTTCCGACGATCGGGAGGACGG
** * *
2894443 GGGGCGTGTGCGCACATGATGTGCGATGGGTGCTATTACTTGGCCCTTATATTGGTCCCCTATCT
1 GGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
2894508 CTCATCAAACCTCAAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCT
65 CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCA
*
2894573 GTAGCCATTAAAGTGTCTGAAACGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
130 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
2894638 GAGTTTTTAGTTGAATTTTTTTGTGCATGCCGACAAAAATACAAGGATCATGTCTACCAAGTTTG
195 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTG
* *
2894703 GGGCCAAAAATCC-CTCTGAAATAATTTTAAAAAATCC
260 GGGCCAAAACTCCTTTC-GAAA-AATTTTAAAAAATCC
2894740 TGTCTCCCTG
Statistics
Matches: 1075, Mismatches: 115, Indels: 19
0.89 0.10 0.02
Matches are distributed among these distances:
900 7 0.01
901 443 0.41
902 101 0.09
903 401 0.37
904 123 0.11
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (901 bp):
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGG
GGCCAAAACTCCTTTCGAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAA
AAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACATACCAC
CCTATCGATCCACGACTTGCGCATCCCATCTCTCTAACCGACGTAGTGCCCGCCCGCCCACCCAC
CCGCTCGTTTCGTCGATTGGCTTAGGCATACAGAGATCATTCCCAGCCTAAGATCAGACCAGATC
GAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGAGGGACCCGATCGATCCCCGGCTTACGCAT
CCCATCCCACTGGCCGGCTGAGCACCCGCACACTCGGTTCATGGTTGACTTAGGAATACGGAGTT
CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGG
CAGCACATGCTAGGCTCAGGCATGTGCTGGTGACGCATTTTTCTTCGTCGAGGCACCATCACCGG
AGCAACACCGGAGAACCTGACAGGCAACATTGGGGTTCCGACGATCGGGAGGACGG
Found at i:2894999 original size:26 final size:26
Alignment explanation
Indices: 2894963--2895015 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2894953 GTTGACTTAG
2894963 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2894989 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2895015 G
1 G
2895016 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2895404 original size:717 final size:717
Alignment explanation
Indices: 2894024--2895453 Score: 2057
Period size: 717 Copynumber: 2.0 Consensus size: 717
2894014 TGCGCATCTC
* ** * *
2894024 GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCACCCGCTCGTTTCGTCTGTTGGCTTAGGC
1 GTCTCCCTGGCCGACACAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * *
2894089 ATACAGAGATCATTCCCAGCCTAAGATCGGACCGGATCGAGTGTTGCGGCAGCAGGATCAGCAGC
66 ATACAGAGATCATTCCAAGCCTAAGATCAGACCAGATCGAGGGTTACGGCAGCAGGATCAGCAGC
* * * * * *
2894154 ACGTCGAGGGGGACTCGGTCGATCCTTGGCTTGCGCATCCCTACCCTCTGGCCGGCTGAGCACCC
131 ACGTCGAGGGAGACTCGGCCGATCCTCGGCTTGCACATCCCGACCCTCTGGCCGACTGAGCACCC
* *
2894219 GCACGCTCGGTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
196 GCACGCTCAGTTCGTGCGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
2894284 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTGCGGCAGCACATGCTAGGCTCAGGCATGTGT
261 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTGCGGCAGCACATGCTAGGCTCAGGCATGTGT
* * * *
2894349 TGGTGTCGCATTTTTCTTCGTTGAGGCACCATCATCGGAGCAACACCGGAGAACCTGACAGGCGG
326 TGGTGCCGCATTTTTCTTCGTCGAGGCACCATCACCAGAGCAACACCGGAGAACCTGACAGGCGG
* * * * *
2894414 CATTGGGGTTCCGATGATCGGGGGGTCGGGGGGCGTGTGCGCACATGATGTGCGATGGGTGCTAT
391 CATTAGGCTTCCGACGATCGGGGGGTCGGGGGGCGTGTGCGCACATGATGTGCGATGGATGCTAC
** * *
2894479 TACTTGGCCCTTATATTGGTCCCCTATCTCTCATCAAACCTCAAGAACTCACATCCCCTTAAAGA
456 TACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
* * *
2894544 GCATTTGAGATTTTACAGGTTTGCTGTCTGTAGCCATTAAAGTGTCTGAAACGGGGACACTTTTT
521 GCATTTGAGATTTTACAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAACGGGGACACTTTTT
* * * * *
2894609 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCGACAA
586 TCAAATGGTCAAAAAATCTTGTACACTTCGAGCTTTTAGCTGAATTTTTTTGTGAATGCCAACAA
* * *
2894674 AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCC-CTCTGAAATAATTTTAAAAAAT
651 AAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAAATCCTCTC-GAAAAAATTTTAAAAAAT
2894738 CCT
715 CCT
* * * *
2894741 GTCTCCCTGGCCGACACAGTGCCCGCCCGCCCGCCCGCCGGTTCGTTTTGTCGGTTGGCTTAGGC
1 GTCTCCCTGGCCGACACAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * *
2894806 ATACGGAGTTCATTCCAAGTCTATGATCAGACCAGA-CTGAGGGTTACGGTAGCAGGATCGGCAG
66 ATACAGAGATCATTCCAAGCCTAAGATCAGACCAGATC-GAGGGTTACGGCAGCAGGATCAGCAG
* *
2894870 CATG-CAGAGGGAGAC-CTGGCCGATCCTCGGCTTGCACATCCCGCCCCTCTGGCCGACTGAGCA
130 CACGTC-GAGGGAGACTC-GGCCGATCCTCGGCTTGCACATCCCGACCCTCTGGCCGACTGAGCA
* *
2894933 CCCGCACGCTCATTTCGTGCGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
193 CCCGCACGCTCAGTTCGTGCGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* *
2894998 GTTCATTCTCAGTCTAAGATCGGACC-GAACCGAGGGGTGCGGCAGCACATGCTAGGCTCGGGCA
258 GTTCATTCCCAGTCTAAGATCGGACCAG-ACCGA-GGGTGCGGCAGCACATGCTAGGCTCAGGCA
* ** * *
2895062 TGTGTTGGTGCCGTATTTTTCTTCGTCGAGGCACCATTGCCAGAGCATCGA-TGGAGAACCTGAC
321 TGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCACCAGAGCAAC-ACCGGAGAACCTGAC
* * * *
2895126 CGGTGGCATTAGGCTTCTGACGATCGGGGGGTCGGAGGGG-GTGTGCGCACATGATGTGTGATGG
385 AGGCGGCATTAGGCTTCCGACGATCGGGGGGTCGG-GGGGCGTGTGCGCACATGATGTGCGATGG
* * *
2895190 ATGCTGCTACTTGGCCCTTATATT-ACCCCCTATCCCTCATCAAACCTCGAGAACTGACACCCCC
449 ATGCTACTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
* *
2895254 TTAAAGAGCATTTGAGATTTTACAGCTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGAC
514 TTAAAGAGCATTTGAGATTTTACAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAACGGGGAC
2895319 ACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGCTTTTAGCTGAATTTTTTTGTGAATG
579 ACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGCTTTTAGCTGAATTTTTTTGTGAATG
* * *
2895384 CCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTTCGAAAAAATTTTA
644 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAAATCCTCTCGAAAAAATTTTA
2895449 AAAAA
709 AAAAA
2895454 ACCCGAACCG
Statistics
Matches: 630, Mismatches: 75, Indels: 16
0.87 0.10 0.02
Matches are distributed among these distances:
716 4 0.01
717 464 0.74
718 157 0.25
719 5 0.01
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (717 bp):
GTCTCCCTGGCCGACACAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACAGAGATCATTCCAAGCCTAAGATCAGACCAGATCGAGGGTTACGGCAGCAGGATCAGCAGC
ACGTCGAGGGAGACTCGGCCGATCCTCGGCTTGCACATCCCGACCCTCTGGCCGACTGAGCACCC
GCACGCTCAGTTCGTGCGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTGCGGCAGCACATGCTAGGCTCAGGCATGTGT
TGGTGCCGCATTTTTCTTCGTCGAGGCACCATCACCAGAGCAACACCGGAGAACCTGACAGGCGG
CATTAGGCTTCCGACGATCGGGGGGTCGGGGGGCGTGTGCGCACATGATGTGCGATGGATGCTAC
TACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAACGGGGACACTTTTT
TCAAATGGTCAAAAAATCTTGTACACTTCGAGCTTTTAGCTGAATTTTTTTGTGAATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAAATCCTCTCGAAAAAATTTTAAAAAATC
CT
Found at i:2895874 original size:26 final size:26
Alignment explanation
Indices: 2895838--2895888 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
2895828 TGACTTAGGA
2895838 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
2895864 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
2895889 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:2896764 original size:26 final size:26
Alignment explanation
Indices: 2896735--2896787 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2896725 GTTAACTTAG
2896735 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
* *
2896761 GCATATGGAGTTCATTCCCATTTTAA
1 GCATACGGAGTTCATTCCCATTCTAA
2896787 G
1 G
2896788 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:2897639 original size:26 final size:26
Alignment explanation
Indices: 2897602--2897654 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2897592 GTTGACTTAG
*
2897602 GCATACGAAGTTCTTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
2897628 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2897654 G
1 G
2897655 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2899399 original size:26 final size:26
Alignment explanation
Indices: 2899369--2899421 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2899359 GTTGACTTAG
*
2899369 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2899395 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2899421 G
1 G
2899422 ATCAGACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2900301 original size:13 final size:13
Alignment explanation
Indices: 2900283--2900308 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2900273 AGTTCATTCC
2900283 CAGTCTAAGATCG
1 CAGTCTAAGATCG
2900296 CAGTCTAAGATCG
1 CAGTCTAAGATCG
2900309 GACCGAGGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (13 bp):
CAGTCTAAGATCG
Found at i:2901179 original size:26 final size:26
Alignment explanation
Indices: 2901149--2901201 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2901139 GTTGACTTAG
*
2901149 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2901175 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2901201 G
1 G
2901202 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2902040 original size:26 final size:26
Alignment explanation
Indices: 2902010--2902062 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2902000 GTTGACTCAG
*
2902010 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
2902036 GCATATGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
2902062 G
1 G
2902063 ATCAGAGCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:2902947 original size:26 final size:26
Alignment explanation
Indices: 2902918--2902967 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
2902908 GACTTAGGCG
*
2902918 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGAAGTTCATTCCCAGTCTAAGCA
2902944 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
2902968 ATCAGACTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:2903569 original size:892 final size:892
Alignment explanation
Indices: 2901320--2914524 Score: 11431
Period size: 895 Copynumber: 14.7 Consensus size: 892
2901310 ACCGGCGGCA
* * *
2901320 AGGGGTGT--GCACATGATGTGAGATAGGTGCTGGTACTTGGCCCTTATATCGGCCCCCTATCCC
1 AGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
2901383 TCATCAAACCTCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAA
66 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA----TG---CC-A
* *
2901448 TAGCCATTACAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
123 T---CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * *
2901513 CA-TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATATAGGGATCACATCTA-CAAGTTCG
185 -AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * *
2901576 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAACTCGTG
249 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
*
2901641 AAAAATAGAAAACGAGTCGTCTTGCCATGAGACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
314 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
2901706 ATTTACAAGCCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
379 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * ** * *
2901771 ACCCTATCGATGCACGGCTTGCACATCTTGTCTCTCTGGCCG--G--TG-T---AG--AGCCCGC
444 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTATGCTGCCCGCCCGCCCGC
* * * * *
2901826 CTG--CTCGTTTCGTCGGTTGGATTAGGCATATGGAGTTCATTCCCAGTCTAAGATTAGACCGGA
509 CCGCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA
* * * * * * *** *
2901889 CCAAGGGTTGTGGTAGTAGGATCAGTAGCACACAGAGGGGGACCCGGTTGATCCCCGGCTTACGC
574 CCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGC
* * ** * *
2901954 ATCCCGCCCCTCTGGCCGACTGAGCGATCGCACGCTCGTTTCATGGGTTGACTCAGGCATACGGA
639 ATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * * *
2902019 GTTCATTCCCAGTCTAAGCATATGGAGTTCACTCCCAGTCTAAGATCAGAGCAAACCAAGGGTTG
704 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
* * * *
2902084 CGGCAGCACATGCTGGGCTCGGACATGTGCTGGTGCCGTATTTTTCATCCCCGGGGCACCATCGT
769 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGT
* * * * * * *
2902149 AGGGGCATCGTCGAAGAACCAGACCGGCGGCATTAGGGTTCC-AGCAAT-GGGGGTGCC-G
834 -CGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGG
* *
2902207 AGGGGTGTGTGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
1 AGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
2902272 TCA-CTAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
66 TCATC-AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-------TGCCA
*
2902336 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
123 -T---CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
2902401 GAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAATGATCATGTCTACCAAGTTTG
184 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * * *
2902466 GGGCCAAAACACCTTCTGAAAAAATTTTAAAAAATCCAGAAACGTAAAAAGTTTCCACAATCGTG
249 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
* *
2902531 AAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGA
314 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * * * *
2902596 ATTTACAAGCAATAAAAATGGCATTGGAACCCAGAAACATGAAGATGTGACTAAACCAACCTACC
379 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * ** *
2902661 ACCCTATCGATCCATGGCTTACGCATCCCGTCTCTCTGGCCGGGGTAGTGCTTGCCCGTCCGCCC
444 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA-TGC-TGCCCGCCCGCCC
* * * **
2902726 GCCCGCCTCTCATTTCGTCAGTCGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACT
507 GCCCG-CTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT
* * * **
2902791 GGATCGAGGGTTGCAGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCACCTTG
571 GGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * * ** * * *
2902856 CACATCCTACCCCTCTGGCCGGCTGAGCGCCCGTAAACTCGTGTCATGGGTTGACTTAGGCGTAC
636 CGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * *
2902921 GGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTAGATCGAGGG
701 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
* * * * *
2902986 TTACGGCAGCACATGCTGGGCTCGGGCAGGTGCTAGTGCCGTATTTTTCTTCGTCGGGGCACCAT
766 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCAT
* *
2903051 CGTCATAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGG
831 CGTC-GAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
*
2903114 AGGGGTGTGCGCACATCATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
1 AGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
2903179 TCATCAAACCTCGAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTACA-G-C-T-ATTAAA
66 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACATGCCATCATTAAA
*
2903240 GTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
131 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
2903305 GAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAATCTC
196 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * *
2903370 CTTCCGAAAAATTTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
261 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
* * * *
2903435 TGAGTCGTCTTACCATTAAACTTCACGTGAAGGCTTACGGGACCATTGTATGAATTTACAAGCCA
326 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * *
2903500 TAAAAGTGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
391 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * ** * * *
2903565 CATGGCTTGCGTATCCTATCTCTCTGGCCGACGTAATGCCCGCCCGCCCGGCCGCCCGTCCGCTC
456 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT-ATG-CTGCCCGCCCGCCCGCCCG--CTCTC
* * * * * ** * *
2903630 GTTCCGTCGGTTGGCTTA-GCACACGGAGTTTATTCCCAGTCTATGATCGGACCAGACCAATGGT
517 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGT
** * * * * * * * * **
2903694 TGCGACAGCAGGATTGGCAGCACACAGAGGGGGACCAGATCGATCCCCGACTTACACATCCCGTT
582 TGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCC
* * *
2903759 CCTCTGGCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTC
647 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
*
2903824 CCAGTC----C--A---AG---------A-TC---G----GACCAGACCGAGGGTTGCGACAGCA
712 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
* * * *
2903863 CATGTTGGGCTCGGGCAGGTGCTGGTGCCGTATTTTTCTTCGCCCGGG---CA----C---CATC
777 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGAGCATC
* * * * * **
2903918 GTCGGAGAACTTGACCGACGACATTAGGGTTTCGGTGATCGGGGGGGCCGG
842 GTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
* * *
2903969 A--GGT-TGTG--C--G-TGTGCGATGGGTGCTGGTACTTGCCCCTTATATTGGGCCCCTATCCC
1 AGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
2904026 TCGTCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
66 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-------TGCCA-
2904091 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
123 T---CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * **
2904156 AGTTTTTAGATGAATTTTTTTG-GCATGCCAACAAAATATACAAGGATCATGTCTACCTGGTTTG
185 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTG
* ** *
2904220 GGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATAGTG
249 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
*
2904285 AAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
314 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
2904350 ATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCCAAACCCACCTACC
379 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * *
2904415 ATCGTATCGATCCACAGCTTGCGCATCTCGTCTCTCTGGCCGGCGTA-G-T----GCCCGCCTGC
444 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTATGCTGCCCGCCCGCCCGC
* * * * * *
2904474 CC-AT-TCGTTTCGTCGATTGGCTTAGGCATACGAAGTTTATTCGCAGTCTAAGATTAGACTGGA
509 CCGCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA
* * * * *** *
2904537 CCGAGGGTT-AGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCTGGTTGATCCCCTGCTTGCGC
574 CCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGC
* * * *
2904601 ATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAAACGGA
639 ATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * *
2904666 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCATTCTAAGATCGGACCAGACCAAAGGTTG
704 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
* * * * * *
2904731 CGGCAGCACTTGCTGGGCTCGAGCTTGTGCTGGTGCCGTATTTTTCTTCACCGAGGCACCATCGT
769 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGT
* * * * * *
2904796 CGGAGCATCGCCAGAGAACCTGACCGGTGGCATTGGGGTTCCTGGCGATTGGGGGGACCGG
834 C-GAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC-GACGATCGGGGGGGCCGG
* *
2904857 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCC
1 AGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
2904922 TCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAG
66 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA----T---GCCA-
* *
2904987 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTCTTCAAATGATCACAAAATCTTGTACACTTCG
123 T---CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
2905052 AATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
185 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * *
2905117 GGCCAAAACTCCTTTC-AAAAAATTTTTAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCGTGA
250 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
2905181 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
315 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * *
2905246 TTTACAAGTCATAAAAATGCCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA
380 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
*
2905311 CCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTA-G-TGCCCGCCCGCCCG-C
445 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTATGCTGCCCGCCCGCCCGCC
* * * * * * *
2905373 C-CTTTCGTTTTGTCGGTTGGCTTAGACAAACGGAGTTCATTCCCAGTCTAAGATTAGACCGAAC
510 CGCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGAC
* ** * * * * *
2905437 CGAGGGTTCCGACAGCAGGATCCGTAGCACACAGAGGGGGA-CCTAGCCGATCCTCGGCTTGCGC
575 CGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGC
* ** * * *
2905501 ATCCCGCCCCTCTGGTTGGCTAAGCGCCCGCTCGCTCGTTACGTGGGTTGACTTAGGCATACGGA
639 ATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
**
2905566 GTTCATTCCCAG--T---C-TA---AG---------A-T-T--G----GACCAGATTGAGGGTTG
704 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
* * * * * *
2905605 CGGCAGCATATGCTGGGCTCGAGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCAC
769 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC-G
* * * *
2905670 TGGAGTATCGTCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATC-GGGGGGCCAG
833 TCGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
2905729 -GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
1 AGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
2905793 TCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
66 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-------TGCCA-
*
2905858 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
123 T---CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * * * * * *
2905923 AGCTTTTACCTGAATGTTTTTATGCATGCAAACAAATATACAAGGATCACGTCTATCAAGTTTGC
185 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* ** * *
2905988 GGCCAAAACTGCTTCCGAAAAAATTTTAAAAGTTCCGGAACCAG-AAAAAGTTTCAAAAATCATG
250 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC-GTAAAAAGTTTCAAAAATCGTG
*
2906052 AAAAATAGAAAACGAGTCGTCTTTCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
314 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
2906117 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGGAGATATGCCTAAACCCACCTACC
379 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
2906182 ACCCTATCAATCCTCGGCATGCGCATCCCATCTCTCTGGCCGACGTA-G-TGCCCGCCCGCCCGC
444 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTATGCTGCCCGCCCGCCCGC
* * * * ** **
2906245 CCGCT-T-GTTTCATCGGTTGGCTTACGCATACGGAGTTCATTCACACTCTAAGATTGGACCAGA
509 CCGCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA
* * * * * * * *
2906308 CCGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGA-GGGGACCCGATCGATCCCCAGCTTACAC
574 CCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGC
* ** ** * *
2906372 ATCCCGCCTTTCTGGCTAGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGA
639 ATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* *
2906437 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTG
704 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
** * * * * **
2906502 CGGCAGCACATGCTGGAATCGGGCATGTG-TCGGCGTCGTATTTTTCCTT-GTCGGGTTACCAT-
769 CGGCAGCACATGCTGGGCTCGGGCATGTGCT-GGTGCCGCATTTTT-CTTCGCCGGGGCACCATC
* * * *
2906564 -T---G---C-T-GGAGAACCTTACCGGCGACATTGGGGTTCTGATGATC--GGGGGCC--
832 GTCGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
* * *
2906612 AGGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTCTATTGGCCCGCTATCCC
1 AGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
2906677 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAG
66 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-------TGCCA-
* *
2906742 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCTAATGTTCACAAAATCTTGTACACTTCG
123 T---CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * * *
2906807 AGTTTTTAGCT-AAATTTTTTGTGCATACCAACAAAAATAAAACGATCACGTCTGCCAAGTTTGG
185 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * *
2906871 GGCCAAAACTCC-TCTCGAAAAAGTTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTG
250 GGCCAAAACTCCTTC-CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
* *
2906935 AAAAATAGAAAACGAGCCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
314 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
2907000 ATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACC
379 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * *
2907065 ACCCTATCGATCCACGGCTTACGTATACCGTCTCTCTGGCTGACGTA-G-TGCCCGTCCGCCCAC
444 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTATGCTGCCCGCCCGCCCGC
* * * **
2907128 TCGCT-T-GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGA
509 CCGCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA
** * * * *
2907191 TTGAGGGTTGCGGTAGCAGGATTGACAGCACGCAGAGGGGGACCTGGCCGATCCCCGGCTTGCGC
574 CCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGC
* * * *
2907256 AT-CTCGCCCCTTTAGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGG
639 ATCCT-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * *** *
2907320 AGTTCATACCCAGTCTAAGTATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCAAGGGTT
703 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * * * * *
2907385 GCGACAGTACATGCTAGGCTCGGGCATTTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCC
768 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCG
* * *
2907450 TCGGAGCATCGTCTGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGGCCGG
833 TC-GAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
* * *
2907511 GGGGGTGTGCATC-CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCAATCC
1 AGGGGTGTGC-GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
2907575 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
65 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-------TGCCA
* *
2907640 GTAGCCATTAAAGTGTCTGAAATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACTTT
123 -T---CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
2907705 GAGTTTCTAGCTGATTTTTTTTGTGCATGCCAAGAAAAGTACAAGGATCACGTCTACCAAGTTTG
184 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * ** *
2907770 GGCCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCTCG-ACCCCAAAAAGTTTCAAAAATCTTG
249 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
2907834 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
314 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
2907899 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
379 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
2907964 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCATA-G-TGCCTGCCCGCCCGC
444 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTATGCTGCCCGCCCGCCCGC
* * ** *
2908027 CCGCTCT--TTTCGTCGATTGGCTTAGGCATATGGAGTTCATTCCCTA-TCTAAGATTGGAGC-A
509 CCGCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCAGA-CTG
* * * * * * * * * *
2908088 AACTGAGGGTTGCGGTAGAAGAATCGGCAGCATGTAGAGGGGGACCCGATCGATTCCTGACTTGC
572 GACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* * *
2908153 GTATCC--CCCCTCTGGCCCGGCTGAGTGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATAC
637 GCATCCTGCCCCTCTGG-CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
2908216 GGAGTTCATTCCCAG--T---C-TA---AG---------A-T-T--G----GACCAGACCGAGGG
701 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
* ** * * ** * * *** *
2908255 TTGCGGCCGCACATGCTGGGCTTAGGCA--TAC-GGAG-TTCA---TTC-CCAGTCTAAGCATAC
766 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GCCGGGGCA-CC
** * ** * * * * * *****
2908312 AGAGTTC-ATTC-TCAGTCTAAG-A-TTGGACCGAACCG-A---GGGTTGC-A-G-TAGCACATG
829 ATCG-TCGA-GCATC-GTCGGAGAACCT-GACCG-GCGGCATTGGGGTTCCGACGATCGGGGGGG
2908366 -C--
889 CCGG
* * * * ** * * * *
2908367 TGGGCT-TG-G-GCATG-TGCTG-G-T-GCTGCATTTTTCTTCG-CC----A--GGGCACC-ATC
1 AGGGGTGTGCGCACATGATG-TGCGATGGGTGC-TGGTACTTGGCCCTTATATTGGCCCCCTATC
** * * * * * * ** * ** * *
2908417 ACCAGAGCATCACC-GGAGAACCTGAC-CTGCGGCATTAGGGTTCCGACGATGGGGGGTCCGGGT
64 -CCTCATCA-AACCTCGAGAA-CTCACAC--C-CCCTTAAAG---AG-C-ATTTGAGAT-----T
* * * * * * * * * * *
2908480 GGGTGTGC--GCACATGATGTGCGATGGGTGCTGGTACT-TGG-CCCTTATATTCACCCCCTATC
113 ---T-TACATGC-CATCAT-T--AAAGTGT-CT-GAAATGGGGACACTT-TTTTCA-----AAT-
** * * ** *** ***
2908541 CCTCATC-AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTT-TGC-T
161 GGTCA-CAAAATCTT--GTA--CACTTCGAGTT-TTTAGC---TGA-ATTTT-T---TTGTGCAT
** ** * * ** *
2908603 GCCAGTAGCCACTA-AA-G-T---GTCTGA--AA---TGGGG---ACACTATTTTC----AAATG
212 GCCAACA-AAAATACAAGGATCACGTCT-ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT-
* * * ** * * ** *** ** ** * * * *
2908650 CTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAAATTTTTTTTGCAAGCCAACAAAAATACA
274 TTTAAAAAATCCCGAAC-CGTAAAAAGTTT--C--AAA--AATCGTG-AA--AAATAGAAA-ACG
* * ** ** ** *** ** ** ** ** ** * ** *
2908715 AG--GATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT-TGAAAAAATCCCGA
328 AGTCG-TCTTG-CCATGAAACTT--CACGTGAA-GGCTTAAGGGACCATTGT-ATGAATTTACAA
** ** * * *
2908777 GCCATAAAAA--GTTTTGAAAATCG-TGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCA
387 GCCATAAAAATGGCATTG-GCA-CGCAGAAATAT-G--AA-GA-T-G---TGCC-T-AAAC-CCA
* * * ** * * * * **** ** *
2908839 CGTGA--AGGCTTAAGGGA-CAATTGGATGAATTTACAAGCCATAAAAATGGCAT-TGGCACGAA
438 CCT-ACCA-CCCT-ATCGATCCA--CG--G--CTTGC--G-CAT-CCCGTCTC-TCTGGC-CGAC
* *** ** * * * * * ** * *
2908900 GAAATATGATGATGTGCCTAAACCCACCTAC-CAC-CCTATCAATC-CATGGCTT-GCGCATCCT
488 G---TATGCTG-CCCGCC--CGCCCGCC--CGCTCTCGTTTC-GTCGGTTGGCTTAG-GCATACG
** ** * * * * * * *** * *
2908961 GTCTCTC-TGGCC-GATGTATTGCCTGCCCGCCTGCCTGCCCGTCCACTCATTTCGTTGGTTGGC
543 GAGT-TCATTCCCAG-TCTA-AG-AT--CAGACTG---GACCG---A--GGGTT-G-CGG-TAGC
*** *** *** *
2909024 TTAGGCATACGG-AGTTCATTC-CA-AGTCTAAGATTGGACCAGA-CTGAGGGTTGTGGTAGCAG
591 --AGG-AT-CGGCAG--CA--CGCAGAG--GGGGACCCGACC-GATC-CCCGG--CT--T-GC--
** * * * *
2909085 GATCGATAGCATGCATAGGGGGACCCGAC-CAATCCCCGGCTTATGCATCCCGCCCCTCTGGCCG
637 G--C-AT--C---C-T-----G-CCC--CTC--TGGCCGGCTGA-GC-GCCCG-CACGCT---C-
* * * * * *
2909149 GTTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAAGCATACGGAGTTCATTCCCTGTTTAAG
676 GTT--TCG--TG---G---G-TTGA--------CTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
2909214 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCACATGCTAGGC
722 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * *
2909279 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGAA
787 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC-GAGCATCGTCGGAGAA
* * ***
2909344 CCTGACCGACGGCATTGCGGTTCCGACGATCCAAGGGGCCGG
851 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
* * * *
2909386 -GGGGTGTGTGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGACCCTTATCCC
1 AGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
** *
2909450 TCATCAATTCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAA
66 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-------TGCC-A
*
2909515 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACG
123 T---CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
2909580 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACTAGGTTTGG
185 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* *
2909645 GGCCAAAA-TACCTTCCGAAAAAATTTTAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGT
250 GGCCAAAACT-CCTTCCGAAAAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
* ** * *
2909709 GAAAAATAGAAAATGAGTCACCTCGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATG
313 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
** * *
2909774 AATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATTAAGATTTGCCTAAACCCACCTAC
378 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
2909839 CACCCTATCGATCCACGACTTGCGCATCCCGTCTCT-TAGACCGACATAGTGCCTGCCCCCCCGC
443 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GGCCGACGTA-TG-CTGCCCGCCCGC
* * * * *
2909903 CCGTCCG--CTCGTTCCGTTGGTTGGCTTAGGC-TACGAAGTTCATTCCCAGTCTAAGATCAAAC
505 CCGCCCGCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* ** * * *
2909965 TGGACTGAGGGTTGCGGTAGCAGGATCAACAGCACGAAGAGGGGGACCTGAACGATCCCCGGCTT
570 TGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
* * * * * **
2910030 ACGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACACTCGTTCCATGGGTTGACTTAGGCGCA
635 GCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * * ** * * *
2910095 CGGAGTTCATTCCCTGTCTAAGCATATGGAGTTCATTCTCATTCTAAGATTGGACCGGATCAAGG
700 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * * **
2910160 GTTACGGCCGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATC---G----A
765 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCA
* * *
2910218 --GGC-AGCATCGTCGGAGAACCTGACCGACGGCTTTGGGGTTCCGACGATCGGGGGGGCCGG
830 TCGTCGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
* *
2910278 GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
1 AGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
2910343 TCATCAAACCTCGGGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
66 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-------TGCCA-
* *
2910408 TAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
123 T---CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * *
2910473 AGTTTTTAGCTGAATTTTTTTGTTCCTGCCAAAAAAAAATACTAGGATCACGTCTACCAAGTTTG
185 AGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * *
2910538 GGGCCAAAACTCCTTCCG-AAAAATTTTAAAAAATCTCAAACCGTAAAAAATTTCAAAAATCGTG
249 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
* *
2910602 AAAAATAGAAAACGACTGGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
314 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * *
2910667 ATTTACTAGCCATAAAAATGGCATTGGCACGTAGAAATATGAATATGTCCCTAAACCCACCTACC
379 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
*
2910732 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA-G-TGCCCGCCCGCCCAT
444 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTATGCTGCCCGCCCGCCC-G
* * ** * *
2910795 CCACCCACTCGTTTTATCGGTTGGCTTACGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTG
508 CC-CGCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTG
** * * * * *
2910860 GATGGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCTGGCCGATCCCTGGCTTGC
572 GACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* * * *
2910925 GCAT-CTCACCCCTTTGGCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACGTT-GGCATA
637 GCATCCT-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-TTAGGCATA
* * *
2910988 CGGAGTTCATTCCCAGCCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGG
700 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * *
2911053 GTTGCGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGTCACCA
765 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCA
* * * ** * * * *
2911118 TCGCTGGAGCATCATCGGAAAACCCAACCAGTGGCATTGGGGTTCAGGCGATC-GGGGGGCCGG
830 TCG-TCGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
* *
2911181 -GGGCGTGTGCGCACATGATGTGCGATGGGGGCTGGTACTTGGCCCTTATGTTGG-CCCCTATCC
1 AGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
2911244 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCA
65 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-------TGCCA
*
2911309 GTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
123 -T---CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
2911374 AAGTTTTTAGCTGATTTTTTTTTGTGCATCCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
184 GAGTTTTTAGCTGA-ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* *
2911439 TGGGCTAAAACTCCTTCCGAAAAAATTTT-AAAAATCTCAAACTGTAAAAAGTTTCAAAAATCGA
248 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-C---C--------G-------AA-C--
*
2911503 TGAACTGTAAAAAGTTTCAAAAATTCCGAACTGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAA
291 ----C-GTAAAAAGTTTCAAAAA-T-CG---TG-AAAAA---TAGAAAA-C--------------
* * * * *
2911568 ACGAGTCGTCTTGCCATGAAACTTCACATGGATGCTTAAGGGACCATTGTATAAATCTACAAGCC
327 --GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
2911633 ATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAAT
390 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
** * * * *
2911698 CCACGGCTTGCGCATCCCGTCTCTCTCACCGGCCTA-G-TGCCCGCCCGCCCACCCG--CTCGTC
455 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTATGCTGCCCGCCCGCCCGCCCGCTCTCGTT
* * * * ** *
2911759 TCATCGGTTGGCTTAGGCATACGGAGCTCATTCCCAGTCTAAGATCGGATTGGATTGAGGGTTGT
520 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGC
* * * *** * *
2911824 AGAAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTTGATCCCCTGCTTGCGCATCCTGTCCCT
585 GGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCT
* * * * *
2911889 CTTGTCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCAT-CGGAGTTCATTCCGA
650 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* ** * *
2911953 GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCATCACAT
715 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACAT
* * * * * **
2912018 GCTGGGCTCGTGCATGTGCTGGTGTCACATTTTTCTTCGGC-GGGCACCATCATCGGAGCATCAC
780 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC-GAGCATCGT
* * * ** *
2912082 CGGAGAACCTGAACGACGGCATTTGGGTTCCGGTGATC-GGGGGGTCGG
844 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
* *
2912130 ATGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCC
1 AGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
2912195 TCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGGTGCCAG
66 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-------TGCCA-
* *
2912260 TAGCAATTAAAGTGTCTAAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCG
123 T--C-ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
2912325 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGCCTACCAAGTTTGG
185 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * *
2912390 GGTCAAAACTCCTTCC-AAAAAACTTTTAAAAAATCCCGAACTGTAAAAA-TTTCAAAAATCATG
250 GGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
* *
2912453 AAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAA
314 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
2912518 ATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGACTAAACCCACCTACC
379 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* ** * **
2912583 ACCCTATC-ATCCACGGCTTGCGCATCCCGCCTCTCTCACCGACCTA-G-TGCCCGCCCGCCCAT
444 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTATGCTGCCCGCCCGCCCGC
* * *
2912645 CCG--CTCATTTCATCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA
509 CCGCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA
** ** * * * * * * *
2912708 TTGAGGGTTGTAGAAGTAGGATCGACAGCAAGTAGAGGGGGACCC-AGCCAATCCCCTGCTTGCG
574 CCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCG
* * * * * *
2912772 CATCTTGCCCCTCTGGCCGGTTGAGCACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAG
638 CATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
** * * *
2912837 AGTTCATTCTGAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTT
703 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * *
2912902 GTGGCAGCACATGCTGGGCTCGTGCATGTGCTGGTGTCGCATTTTTCTTCGCC-GGGCACCATCG
768 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCG
** * * * * * *
2912966 TCGGAGCATCACCGGAGAACCTGAACGGCGGCATTTGGGTTCTGGCGATC-GGGTGGTCGG
833 TC-GAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
*
2913026 -GGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
1 AGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
2913090 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGGTGCCAG
66 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-------TGCCA-
* *
2913155 TAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
123 T---CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
2913220 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
185 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * ** * *
2913285 GGTCAAAACTCCTTCC-AAAAAACATTTAAAAAATCTCGAAAAGTAAAAA-TTTTAAAAATCATG
250 GGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
* *
2913348 AAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAA
314 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* ** * *
2913413 ATTTACAAGCCATAAAAATGGCATTGCCACATAGAAATCTGAAGATGTGACTAAACCCACCTACC
379 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * * * * **
2913478 ATCCTATCGATCCACGACTTGCGCATCCCCTCTTTTTGGCCGGCGTAATGCCCGCCTGTTCGCCC
444 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT-ATG-CTGCCCGCCCGCCC
* *
2913543 GCCCG-T-TCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTA
507 GCCCGCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTG
** * * ** * **
2913606 GACCGAGGGTTGCAATAGCAGGATTGGCACCACGCAGACAGGGACCCGACCAATCCTAGGCTTGC
572 GACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* ** * * * * * *
2913671 GCAT-CTCGTCCCTCTGAACTGTTGAGCACCCGTACACTCGTTTCGTGGGTTGACTTAGGCATAT
637 GCATCCT-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * *
2913735 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGT
701 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
* * * *
2913800 TTGCGGCAGCACAT-ATGCGGCTTGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCA
766 TTGCGGCAGCACATGCTG-GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCA
* * ** *
2913864 TCGTCGGAGCATCGTCGGAGAACCGGACCGGCGGCATTGTGGTTCCGGTGATCGGGGGGGCCAG
830 TCGTC-GAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
*
2913928 -GGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
1 AGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * * *
2913992 TCATCAAATCTCGAGAACTCACAACCCCTTAAACAGCATTTGAGATTTTATAGGTTTGCTGCCAG
66 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-------TGCCA-
* * *
2914057 TAGCCATTAAACTGTCTAAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
123 T---CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* ** * *
2914122 AGTTTTTAGCTGAATTTTTTTATGCATGTGAACAAAAATATAAGGATCACGGCTACCAAGTTTGG
185 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * ** * *
2914187 GGTCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTGTCAAAAATTGTGA
250 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
*
2914252 GAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
315 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * *
2914317 TTTACAAGCCATAAAAATGGAATTGGCACGCAAAAATATAAAGATGTACCTAAACCCACCTACCA
380 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * * * *
2914382 CCCTATTGATCCACAGCTTCCGCATCCCATCTCTCTGGCGGACGTA-G-TGCCTGCCCTCCCACC
445 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTATGCTGCCCGCCCGCCCGCC
* * * *
2914445 CG--CTCGTTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCTAGTCTAAGATCGGA-TCAGA
510 CGCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGA
* *
2914507 CCGAGGGTTTCAGTAGCA
574 CCGAGGGTTGCGGTAGCA
2914525 CATGCTGGGC
Statistics
Matches: 10170, Mismatches: 1537, Indels: 1210
0.79 0.12 0.09
Matches are distributed among these distances:
843 3 0.00
844 16 0.00
845 7 0.00
846 2 0.00
847 99 0.01
849 2 0.00
850 143 0.01
851 45 0.00
852 21 0.00
853 20 0.00
854 18 0.00
855 61 0.01
856 8 0.00
857 6 0.00
858 12 0.00
859 16 0.00
860 4 0.00
861 27 0.00
862 324 0.03
863 11 0.00
864 9 0.00
865 22 0.00
866 88 0.01
867 15 0.00
868 12 0.00
869 18 0.00
870 38 0.00
871 344 0.03
872 342 0.03
873 14 0.00
874 107 0.01
875 2 0.00
876 64 0.01
877 2 0.00
878 6 0.00
879 4 0.00
880 9 0.00
881 9 0.00
882 8 0.00
883 362 0.04
884 372 0.04
885 9 0.00
886 36 0.00
887 41 0.00
888 32 0.00
889 217 0.02
890 230 0.02
891 12 0.00
892 770 0.08
893 479 0.05
894 54 0.01
895 904 0.09
896 553 0.05
897 92 0.01
898 71 0.01
899 647 0.06
900 468 0.05
901 59 0.01
902 524 0.05
903 365 0.04
904 37 0.00
905 310 0.03
906 10 0.00
907 112 0.01
908 1 0.00
909 2 0.00
911 3 0.00
912 3 0.00
913 6 0.00
914 2 0.00
915 2 0.00
916 7 0.00
917 4 0.00
918 1 0.00
919 2 0.00
920 6 0.00
921 6 0.00
922 17 0.00
923 9 0.00
924 5 0.00
925 3 0.00
926 4 0.00
927 5 0.00
928 3 0.00
929 24 0.00
930 5 0.00
931 5 0.00
932 4 0.00
933 1 0.00
934 2 0.00
935 7 0.00
937 1 0.00
938 8 0.00
939 2 0.00
940 1 0.00
942 1 0.00
944 2 0.00
945 1 0.00
946 1 0.00
947 1 0.00
948 7 0.00
949 173 0.02
950 265 0.03
951 160 0.02
952 5 0.00
953 5 0.00
954 10 0.00
955 169 0.02
956 1 0.00
957 5 0.00
958 4 0.00
959 4 0.00
960 4 0.00
962 4 0.00
963 2 0.00
964 1 0.00
965 3 0.00
967 1 0.00
968 1 0.00
969 3 0.00
970 3 0.00
973 4 0.00
975 1 0.00
976 3 0.00
977 35 0.00
978 13 0.00
979 2 0.00
980 4 0.00
981 2 0.00
982 5 0.00
983 4 0.00
984 5 0.00
985 4 0.00
986 5 0.00
987 1 0.00
989 3 0.00
993 1 0.00
994 4 0.00
995 9 0.00
996 6 0.00
997 2 0.00
998 4 0.00
999 1 0.00
1002 3 0.00
1003 44 0.00
1004 10 0.00
1005 4 0.00
1006 34 0.00
1007 17 0.00
1008 6 0.00
1009 24 0.00
1010 31 0.00
1011 8 0.00
1012 2 0.00
1013 17 0.00
1014 3 0.00
1015 14 0.00
1016 10 0.00
1017 3 0.00
1018 4 0.00
1019 8 0.00
1020 17 0.00
1021 16 0.00
1022 20 0.00
1023 8 0.00
1024 199 0.02
1025 237 0.02
1026 199 0.02
1027 186 0.02
1028 178 0.02
1029 152 0.01
1030 250 0.02
1031 222 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (892 bp):
AGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACATGCCATCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTATGCTGCCCGCCCGCCCGCCCGCTCTCGTTT
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCG
GTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTC
TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATG
CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGAGCATCGTCG
GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
Found at i:2906400 original size:871 final size:876
Alignment explanation
Indices: 2895862--2908276 Score: 14326
Period size: 870 Copynumber: 14.1 Consensus size: 876
2895852 CCCAGTCTAA
* *
2895862 GCATACGGAGTTCATTCCCAGTCTAAG-AT-CG-GAC-CGGACCGAGGGTTGCGGCAGCACATGC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAGACTCAGATCGAGGGTTGCGGCAGCACATGC
** * * * *
2895923 TGGGCTCGGGCATGTATTGGTGCCGCATTTTTCTTCGTCGGGGCTCCATCGTCGGAGCATCACCG
66 TGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCCTCGGAGCATCGCCG
* * * * * *
2895988 GAGAACCTGATCAACGACATTGCGGTTTCGACGATCGGGAGGACC---GGG-G-G-G-----G-T
131 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGCCAGGGGGTGTGCGCACATGAT
* * *
2896041 GTGCGATGGGTGCTGGTACTCGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
195 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
2896106 CACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTGA
260 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
2896171 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAAGTTTT
325 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
2896236 TTGTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTAGGGACAAAACTCCTTCCAAA
390 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* *
2896301 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATTC-TGAAAAATTGAAAACGAGTCG
455 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA-TCGTGAAAAATAGAAAACGAGTCG
* *
2896365 TCTTGCCATGAAACATCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
519 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* **
2896430 GGCATTGACACACAGAAATATGAAGATGTG-CTGAAACCCACCTACCACCCTATCGATCCACGGC
584 GGCATTGGCATGCAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGC
2896494 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCTCCCGCCTGCCTGCACGCCCGCCCGCTTGT
648 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTG------C-CC-G-C--C-CGCCCGCCCGCTTGT
* * * ** *
2896559 TTCATCGGTTGGCTTAGGTATATGGAGTTCATTCCCTA-TCTAAGATCAGACTGGACTGAGGGTT
701 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCAGACCGAGGGTT
* * * * * * * *
2896623 GTGGCAGTAGGATCGGCAGCACGTAGAGGGAGACTCGGTCGATCCCCGGCTTGTGCATCCCACCC
765 GCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCC
* * * * *
2896688 CTCTGACCGGCTGAGTGCCCGTACGCTCATTTCGTGGGTTAACTTAG
830 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * **
2896735 GCATACGGAGTTCATTCCCATTCTAAGCATATG-G----AGTTC-A---TT----C--C-CATTT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAGACTCAGATCGAGGGTTGCGGCAGCACATGC
** * * * * * * * **
2896784 TAAGATTGGACCA-G-ACCGAG-GTCGCATTTTTCTTCGTCAAGGCACCATCGC-CGGAGCATCG
66 TGGGCTCGG-GCATGTGCTG-GTGCCGTATTTTTCTTCGTCGGGGCACCATC-CTCGGAGCATCG
* * **
2896845 CCGTAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCGTATG
128 CCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCACATG
* *
2896910 ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC-CATCAAACCTCAAGAA
193 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
2896974 CTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATAAAAGTGTCT
258 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
2897039 GAATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATAT
323 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * ** *
2897104 TTTTGTGCATGCCCACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTGTTTCTG
388 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * *
2897169 AAAAAATTTTAAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGT
453 AAAAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* *
2897234 CGTCTTGCCATAAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
517 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* ** *
2897299 CTGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGG
582 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* *
2897364 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCTCGCCCGCCCGCCCGCTCGTTTC
647 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG------C-C-CGCCCGCCCGCCCGCTTGTTTC
* * * *
2897429 GTCGGTTGGCTTAGGCATACGGAGTTGATTCCCAGCCTAAGATCGGACCAGACCGAGGGTTGTGG
704 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
* * * *
2897494 CAGC-GAGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCACCCCTC
769 CAGCAG-GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTC
* *
2897558 TGGCCGGTTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAG
833 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
2897602 GCATACGAAGTTCTTTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAG---A----C--TC--AGAT-----C-G--
* *
2897667 CAAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGG
46 --AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
* * *
2897732 CACCATCGC-CGGAGCATCGCCAGAGCATCGTCGGAAAACCTTATCGGCGGCATTGGGGTTCCGA
109 CACCATC-CTCGGAGCATCGCC-G-G-A------G--AACCTGACCGACGGCATTGGGGTTCCGA
* *
2897796 CGATC-----G--AGGGGGTGTGCGCTCATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATAT
162 CGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
2897854 TAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
227 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * *
2897919 AGGTTTGCTGCCAGTAGCCATCAAAGTGTCTAAAATGGGGACACTTTTTTCAATTGGTCACAAAA
292 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
2897984 TCTTGTACACTTGGAGTTTTTAGCTCAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
357 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * * *
2898049 TCTACCAAGTTTGGGACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAATGT
422 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
* * *
2898114 TTCCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGG
487 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
*
2898179 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCT
552 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* *
2898244 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTTTCTCTGGCCGTCGTAGT---
617 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
* ** *
2898306 -GCTCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGAT
682 CGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
** ** * * * * *
2898370 TGGACTGGACCGAGGGTTACGACAGGAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGATCCCC
747 CAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCC
* * * * * * *
2898435 GACTTGCGCATCCCGCCCCTCTAGCCGGTTGAGCGCCTGTACGCTCATTTCGTTGGTTGACTTAG
812 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
2898500 GCATACGGAGTTCATTCCCAGTCTATG-AT-C-AGAC-CAGA-CTGAGGGTTACGACAGCACATG
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAGACTCAGATC-GAGGGTTGCGGCAGCACATG
* *** * *
2898560 CTAGGG-TCGTGCATGTGCTGGTGCCGTATTTTTCTTTACCGAGGCACCATTGC-CGGAGCATCG
65 CT-GGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCA-TCCTCGGAGCATCG
* **
2898623 CCGGAGAACCTGACCGACGGCATTGGGGTTCTGACGATCGAGGGGGTCGGGGGGGTGTGCGCACA
128 CCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGG-CCAGGGGGTGTGCGCACA
* *
2898688 TGATGTGTGATGGGTGCTGGTACTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
191 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * * * **
2898753 AACTCACAACCCCTAAAAGAGCATTTCAGATTTTATAGGTTTGCTGCCAGTAGCCATTGTAGTGT
256 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
** * *
2898818 CTGAAATGCAGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTTGAGTTTTTAGCTGAAT
321 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * *
2898883 TGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTGCTTC
386 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * *
2898948 CAAAAAAACTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAG
451 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
2899013 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
516 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * *
2899078 AATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACGCACCTACC-CCCTATCGATCCATG
581 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * **
2899142 GCTTGCGCAACCCGTCTTTCTGGCCGGCGTAGTGCCCGCCCGCCCG--TTC-T-TTTCGTCGGTT
646 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTT
* * * * *
2899203 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAAACTGAGGTTTGCGGCAGTAGG
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGG
* * * ** * * * *
2899268 ATTGGCAGCACGTAGAGGGGGACTCGGCCGATCCCTGGCTTGCGCATGCTGCCCCTCTGGCTGGC
776 ATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
2899333 TGAGCGACTGCACGCTCCTTTCATGGGTTGACTTAG
841 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
2899369 GCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAG---------A--C-----TCAGA-T----
* * * *
2899434 CGAGGGTTTCGGCAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCATATTTTTCTT-GATCGGG
44 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCG-TCGGG
* * * * * * *
2899498 GCACTATCGTCGGAGCATCACCGGAGAACCTAACCAACGGCATTGTGGTTCCGGCGATCGGGGGG
108 GCACCATCCTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGG
*
2899563 GCCAGGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
172 GCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
2899628 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTG
237 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
2899693 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCAC
302 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
2899758 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATA-ATAGGATCATGTCTACCAA
367 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACA-AGGATCACGTCTACCAA
* * * **
2899822 GTTTGGGGACAAAACTCCTACCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAA
430 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
*
2899887 TCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
495 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
2899952 TATGAATTTACAAGCCATAAAAATGGCATTTGCATGCAGAAATATGAAGATGTGCCTAAGCCCAC
560 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * *
2900017 CTACCACCCTATCGATCCATGACTTGCGCATCCCGTCTCTCTGGTCGACGTAAT----GCCCGCC
625 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
** * *
2900078 CGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTAATTCCCAGTCTAAGATCAGACC-G
690 CGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * * * *
2900142 AACTGATGGTTGCAGTAGCAGGATCGACAGCACGTAGAGGGGGACACGATCGATCCCCGACTTGC
755 -ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGC
* * *
2900207 ACATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAG
819 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
2900265 GCATACGGAGTTCATTCCCAGTCTAAG-AT-CGCAGTCTAAGATCGGACCGAGGGTTACGGCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACG-AGACTCAGAT-----CGAGGGTTGCGGCAGC
* ** * * *
2900328 AAATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGAAGCA
60 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCCTCGGAGCA
* *
2900393 TCGCCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGC
125 TCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-AGGGGGTGTGCGC
* * *
2900458 ACATGATGTGCGATGGGTGCT-GTACTTGGCCCTTATATTGGCTCCCTATCCCTCATGAAACCTT
188 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
2900522 GAGAACTCACACCCCTTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
253 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
2900587 TGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTG
318 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * * *
2900652 AATTTTTTTGTGCATGCTAACAAAAATACAAGGATCATGGCCACCAAGTTCGGGGCCAAAACT-C
383 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * * ** *
2900716 TTTCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAGGTTTCAAAAATTATCAAAAATAGAAAAC
448 TTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* *
2900781 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCTT
513 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
** ** *
2900846 AAAGCTGTTATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAAT-
578 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG-ATC
* * *
2900910 CACGGCTTGCGCATCCCGCCTCTCTGGCCGACATAGTGCCCGCCAGCCCGCCCGCTCGCTCGTTT
642 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCT---T-GTTT
* * *
2900975 CGTCGTTTGGCTTAGGCATACGGAGTTCATTGCCAGTCTAAGATCAGACCAGACCGAGGGTTGTG
703 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG
* * ** * *
2901040 GCAGCAAGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCTACTTCCGCATCCTGCCCCTC
768 GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * * *
2901105 TGGCCGGTTGAGCGCCTGCATGCTCTTTTCATGGGTTGACTTAG
833 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
2901149 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAG---A----C--TC--AGAT----------
* * * ** *
2901214 CGAGGGTTGCGGTAGCTCATGCTGGGCTCTGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGG
44 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
* * *
2901279 CACCATCGTCGGAGCATCACC--AG-A--T-A---AC--C--------T--GAC---C-GGCGG-
109 CACCATCCTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGC
* * * *
2901318 CAAGGGGTGT--GCACATGATGTGAGATAGGTGCTGGTACTTGGCCCTTATATCGGCCCCCTATC
174 CAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
2901381 CCTCATCAAACCTCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACC
239 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
2901446 AATAGCCATTACAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
304 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
2901511 CGCA-TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATATAGGGATCACATCTA-CAAGTT
369 CG-AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * *
2901574 CGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAACTCG
433 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
*
2901639 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAGACTTCACGTGAAGGCTTAAGGGACCATTGTAT
498 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
2901704 GAATTTACAAGCCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
563 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * ** * *
2901769 CCACCCTATCGATGCACGGCTTGCACATCTTGTCTCTCTGGCCG--GT-GT---AG--AGCCCGC
628 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC
* * * * * *
2901826 CTGCTCGTTTCGTCGGTTGGATTAGGCATATGGAGTTCATTCCCAGTCTAAGATTAGACCGGACC
693 CCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
* * * * * * * * * *
2901891 AAGGGTTGTGGTAGTAGGATCAGTAGCACACAGAGGGGGACCCGGTTGATCCCCGGCTTACGCAT
758 GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCAT
* ** * *
2901956 CCCGCCCCTCTGGCCGACTGAGCGATCGCACGCTCGTTTCATGGGTTGACTCAG
823 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
2902010 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCACTCCCAGTCTAAGATCAGAGCAAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATA-CGAG---A----C--TC--AGATC---G-----
* * **
2902075 CAAGGGTTGCGGCAGCACATGCTGGGCTCGGACATGTGCTGGTGCCGTATTTTTCATCCCCGGGG
46 --AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
* * * * * * * * *
2902140 CACCATCGTAGGGGCATCGTCGAAGAACCAGACCGGCGGCATTAGGGTTCC-AGCAAT-GGGGGT
109 CACCATCCTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGG-
* *
2902203 GCC-GAGGGGTGTGTGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
172 GCCAG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
2902267 ATCCCTCA-CTAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
236 ATCCCTCATC-AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
2902331 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
300 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
2902396 ACTTTGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAATGATCATGTCTACCAA
365 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * * * *
2902461 GTTTGGGGCCAAAACACCTTCTGAAAAAATTTTAAAAAATCCAGAAACGTAAAAAGTTTCCACAA
430 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* *
2902526 TCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTG
495 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * ** * * *
2902591 TATGAATTTACAAGCAATAAAAATGGCATTGGAACCCAGAAACATGAAGATGTGACTAAACCAAC
560 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * ** *
2902656 CTACCACCCTATCGATCCATGGCTTACGCATCCCGTCTCTCTGGCCGGGGTAGTGCTTGCCCGTC
625 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G--TGCCCGCC
* * * *
2902721 CGCCCGCCCGCCTCTCATTTCGTCAGTCGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
686 CGCCCGCCCG-CT-T-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* ** * * * * * *
2902786 GGACTGGATCGAGGGTTGCAGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCA
748 AGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCG
* * ** * ** * *
2902851 CCTTGCACATCCTACCCCTCTGGCCGGCTGAGCGCCCGTAAACTCGTGTCATGGGTTGACTTAG
813 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
2902915 GCGTACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACG-AG---------A--C-----T----C-AGAT
* * *
2902980 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCAGGTGCTAGTGCCGTATTTTTCTTCGTCGGGG
44 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
* ** * *
2903045 CACCATCGTCATAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
109 CACCATCCTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGG
* * *
2903110 TCGGAGGGGTGTGCGCACATCATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
173 CCAG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
2903175 TCCCTCATCAAACCTCGAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTACA--------G
237 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
2903232 -C--T----ATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
302 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
2903290 TTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
367 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
2903355 TTGGGGCCAAATCTCCTTCCGAAAAATTTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
432 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * * * *
2903420 ATGAAAAATAGAAAATGAGTCGTCTTACCATTAAACTTCACGTGAAGGCTTACGGGACCATTGTA
497 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
2903485 TGAATTTACAAGCCATAAAAGTGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCT
562 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * ** *
2903550 ACCACCCTATCGATCCATGGCTTGCGTATCCTATCTCTCTGGCCGACGTAATGCCCGCCCGCCCG
627 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C-
* * * * * *
2903615 GCCGCCCGTCCGCTCGTTCCGTCGGTTGGCTTA-GCACACGGAGTTTATTCCCAGTCTATGATCG
689 -CCG--C--CCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * * *
2903679 GACCAGACCAATGGTTGCGACAGCAGGATTGGCAGCACACAGAGGGGGACCAGATCGATCCCCGA
749 GACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGG
* * ** * *
2903744 CTTACACATCCCGTTCCTCTGGCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
814 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
2903807 GCGTACGGAGTTCATTCCCAGTCCAAG-AT-CG-GAC-CAGACCGAGGGTTGCGACAGCACATGT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAGACTCAGATCGAGGGTTGCGGCAGCACATGC
* * *
2903868 TGGGCTCGGGCAGGTGCTGGTGCCGTATTTTTCTTCGCCCGGGCACCA---TC---G--T---CG
66 TGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCCTCGGAGCATCGCCG
* * * * ** * *
2903922 GAGAACTTGACCGACGACATTAGGGTTTCGGTGATCGGGGGGGCC-GGAGGT-TGTG--C--G-T
131 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCAGGGGGTGTGCGCACATGAT
* * * *
2903980 GTGCGATGGGTGCTGGTACTTGCCCCTTATATTGGGCCCCTATCCCTCGTCAAACCTCAAGAACT
195 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
2904045 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
260 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
2904110 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTT
325 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* ** *
2904175 TTG-GCATGCCAACAAAATATACAAGGATCATGTCTACCTGGTTTGGGGCCAAAACTCCATCCGA
390 TTGTGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
** * *
2904239 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATAGTGAAAAATAGAAAACGAGTCC
454 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
2904304 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
519 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
2904369 GGCATTGGCATGCAAAAATATGAAGATGTGCCCAAACCCACCTACCATCGTATCGATCCACAGCT
584 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
2904434 TGCGCATCTCGTCTCTCTGGCCGGCGTAGT----GCCCGCCTGCCC-ATTCGTTTCGTCGATTGG
649 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTT-GTTTCGTCGGTTGG
* * * * ** *
2904494 CTTAGGCATACGAAGTTTATTCGCAGTCTAAGATTAGACTGGACCGAGGGTT-AGGCAGCAGGAT
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT
* * * * * *
2904558 CGGCAGCATGCAGAGGGGGACCTGGTTGATCCCCTGCTTGCGCATCCCGCCCCTCTGGCCGACTG
778 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
*
2904623 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
2904657 GCAAACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCATTCTAAGATCGGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAG---A----C--TC--AGATC-G---AG--
* * * ** *
2904722 CAAAGGTTGCGGCAGCACTTGCTGGGCTCGAGCTTGTGCTGGTGCCGTATTTTTCTTCACCGAGG
48 ----GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
* * ** * *
2904787 CACCATCGTCGGAGCATCGCCAGAGAACCTGACCGGTGGCATTGGGGTTCCTGGCGATTGGGGGG
109 CACCATCCTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCC-GACGATCGGGGGG
* *
2904852 ACCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCT
173 -CC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
2904917 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCA
236 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
2904982 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTCTTCAAATGATCACAAAATCTTGTACA
301 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
2905047 CTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
366 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * *
2905112 TTTGGGGCCAAAACTCCTTTC-AAAAAATTTTTAAAAATCCCGAACCGAAAAAAGTTTCAAAAAT
431 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
2905176 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
496 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * *
2905241 ATGAATTTACAAGTCATAAAAATGCCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACC
561 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
*
2905306 TACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
626 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
* * * * *
2905371 GCCC-TTTCGTTTTGTCGGTTGGCTTAGACAAACGGAGTTCATTCCCAGTCTAAGATTAGACC-G
691 GCCCGCTT-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * * * *
2905434 AACCGAGGGTTCCGACAGCAGGATCCGTAGCACACAGAGGGGGA-CCTAGCCGATCCTCGGCTTG
755 -ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTG
** * * *
2905498 CGCATCCCGCCCCTCTGGTTGGCTAAGCGCCCGCTCGCTCGTTACGTGGGTTGACTTAG
818 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
2905557 GCATACGGAGTTCATTCCCAGTCTAAG-AT-TG-GAC-CAGATTGAGGGTTGCGGCAGCATATGC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAGACTCAGATCGAGGGTTGCGGCAGCACATGC
* * ** * *
2905618 TGGGCTCGAGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCACT-GGAGTATCGTC
66 TGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATC-CTCGGAGCATCGCC
* *
2905682 GGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCACATGAT
130 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCACATGAT
*
2905747 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
195 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
2905812 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
260 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
2905877 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGCTTTTACCTGAATGTTT
325 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * *
2905942 TTATGCATGCAAACAAATATACAAGGATCACGTCTATCAAGTTTGCGGCCAAAACTGCTTCCGAA
390 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
** * *
2906007 AAAATTTTAAAAGTTCCGGAACCAG-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
455 AAAATTTTAAAAAATCCCGAACC-GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
2906071 TCTTTCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
519 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * * * * *
2906136 GGCATTGGCACACAGAAATATGGAGATATGCCTAAACCCACCTACCACCCTATCAATCCTCGGCA
584 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
2906201 TGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCATCGGTTGGC
649 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGC
* * * ** *
2906266 TTACGCATACGGAGTTCATTCACACTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATC
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
* * * * * ** **
2906331 GACAGCATGCAGA-GGGGACCCGATCGATCCCCAGCTTACACATCCCGCCTTTCTGGCTAGCTGA
779 GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
2906395 GCGCCCGCACGCTTGTTTCATGGGTTGACTTAG
844 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
2906428 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAG---------A--C-----TCAGAT-----
** * *
2906493 CGAGGGTTGCGGCAGCACATGCTGGAATCGGGCATGTG-TCGGCGTCGTATTTTTCCTT-GTCGG
44 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT-GGTGCCGTATTTTT-CTTCGTCGG
** * * * * *
2906556 GTTACCAT--T----GC-T----GGAGAACCTTACCGGCGACATTGGGGTTCTGATGATC-GGGG
107 GGCACCATCCTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
* * *
2906609 GCCA-GGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTCTATTGGCCCGCTA
172 GCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
2906673 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTG
237 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
2906738 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCTAATGTTCACAAAATCTTGTACAC
302 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * *
2906803 TTCGAGTTTTTAGCT-AAATTTTTTGTGCATACCAACAAAAATAAAACGATCACGTCTGCCAAGT
367 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
2906867 TTGGGGCCAAAACTCC-TCTCGAAAAAGTTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAAT
432 TTGGGGCCAAAACTCCTTC-CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* *
2906931 CGTGAAAAATAGAAAACGAGCCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
496 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
2906996 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACC
561 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * *
2907061 TACCACCCTATCGATCCACGGCTTACGTATACCGTCTCTCTGGCTGACGTAGTGCCCGTCCGCCC
626 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
* * * *
2907126 ACTCGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGA
691 GCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
** * * * * **
2907191 TTGAGGGTTGCGGTAGCAGGATTGACAGCACGCAGAGGGGGACCTGGCCGATCCCCGGCTTGCGC
756 CCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
* * * *
2907256 ATCTCGCCCCTTTAGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
821 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
2907312 GCATATGGAGTTCATACCCAGTCTAAGTATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAG---A----C--TC--AGATC------G--
* * * * * **
2907377 CAAGGGTTGCGACAGTACATGCTAGGCTCGGGCATTTGCTGGTGCCGCATTTTTCTTCACCGGGG
46 --AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
* * *
2907442 CACCATCCTCGGAGCATCGTCTGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGG
109 CACCATCCTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGG
* * *
2907507 CC-GGGGGGGTGTGCATCCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCA
173 CCAGGGGGTGTGCGCA--CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
2907571 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
236 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
2907636 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACA
301 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * *
2907701 CTTTGAGTTTCTAGCTGATTTTTTTTGTGCATGCCAAGAAAAGTACAAGGATCACGTCTACCAAG
366 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * **
2907766 TTTGGGCCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCTCG-ACCCCAAAAAGTTTCAAAAAT
431 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
*
2907830 CTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
496 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
2907895 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
561 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
2907960 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCATAGTGCCTGCCCGCCC
626 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
* * ** *
2908025 GCCCGCTCT-TTTCGTCGATTGGCTTAGGCATATGGAGTTCATTCCCTA-TCTAAGATTGGAGCA
691 GCCCGCT-TGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCA
* * * * * * * * * *
2908088 AACTGAGGGTTGCGGTAGAAGAATCGGCAGCATGTAGAGGGGGACCCGATCGATTCCTGACTTGC
754 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGC
* * *
2908153 GTAT-CC-CCCCTCTGGCCCGGCTGAGTGCCCGCACGCTCGTTTTGTGGGTTGACTTAG
819 GCATCCCGCCCCTCTGG-CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
2908210 GCATACGGAGTTCATTCCCAGTCTAAG-AT-TG-GAC-CAGACCGAGGGTTGCGGCCGCACATGC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAGACTCAGATCGAGGGTTGCGGCAGCACATGC
2908271 TGGGCT
66 TGGGCT
2908277 TAGGCATACG
Statistics
Matches: 9946, Mismatches: 1193, Indels: 807
0.83 0.10 0.07
Matches are distributed among these distances:
847 94 0.01
849 1 0.00
850 138 0.01
851 40 0.00
852 5 0.00
853 5 0.00
854 5 0.00
855 40 0.00
856 2 0.00
857 1 0.00
858 7 0.00
859 4 0.00
860 73 0.01
861 326 0.03
862 326 0.03
863 6 0.00
864 4 0.00
865 12 0.00
866 73 0.01
867 194 0.02
868 4 0.00
869 220 0.02
870 636 0.06
871 611 0.06
872 442 0.04
873 450 0.05
874 107 0.01
875 5 0.00
876 266 0.03
877 44 0.00
878 309 0.03
879 39 0.00
880 19 0.00
881 4 0.00
882 13 0.00
883 360 0.04
884 535 0.05
885 15 0.00
886 41 0.00
887 41 0.00
888 19 0.00
889 223 0.02
890 235 0.02
891 10 0.00
892 502 0.05
893 20 0.00
894 223 0.02
895 560 0.06
896 455 0.05
897 104 0.01
898 262 0.03
899 561 0.06
900 197 0.02
901 1 0.00
902 90 0.01
903 2 0.00
904 4 0.00
905 290 0.03
906 43 0.00
907 118 0.01
908 1 0.00
909 2 0.00
910 261 0.03
911 206 0.02
912 3 0.00
915 6 0.00
916 1 0.00
917 30 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (876 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGAGACTCAGATCGAGGGTTGCGGCAGCACATGC
TGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCCTCGGAGCATCGCCG
GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGG
CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:2906458 original size:26 final size:26
Alignment explanation
Indices: 2906428--2906480 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2906418 GTTGACTTAG
2906428 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2906454 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2906480 G
1 G
2906481 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2908316 original size:26 final size:26
Alignment explanation
Indices: 2908280--2908332 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2908270 CTGGGCTTAG
*
2908280 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2908306 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2908332 G
1 G
2908333 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2909239 original size:26 final size:26
Alignment explanation
Indices: 2909184--2909239 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
2909174 TGGGTTGACT
* * *
2909184 TAAGCATACGGAGTTCATTCCCTGTT
1 TAAGCATACAGAGTTCATTCCCAGTC
2909210 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
2909236 TAAG
1 TAAG
2909240 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:2911019 original size:26 final size:26
Alignment explanation
Indices: 2910983--2911035 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2910973 GTTGACGTTG
2910983 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
* *
2911009 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
2911035 G
1 G
2911036 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:2911498 original size:27 final size:26
Alignment explanation
Indices: 2911458--2911545 Score: 108
Period size: 26 Copynumber: 3.3 Consensus size: 26
2911448 ACTCCTTCCG
* * *
2911458 AAAAAATTTTAAAAATCTCAAACTGT
1 AAAAAGTTTCAAAAATCTCGAACTGT
2911484 AAAAAGTTTCAAAAATCGAT-GAACTGT
1 AAAAAGTTTCAAAAATC--TCGAACTGT
2911511 AAAAAGTTTCAAAAAT-TCCGAACTGT
1 AAAAAGTTTCAAAAATCT-CGAACTGT
2911537 AAAAAGTTT
1 AAAAAGTTT
2911546 TGAAAATCGT
Statistics
Matches: 55, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
24 1 0.02
26 31 0.56
27 22 0.40
28 1 0.02
ACGTcount: A:0.50, C:0.11, G:0.10, T:0.28
Consensus pattern (26 bp):
AAAAAGTTTCAAAAATCTCGAACTGT
Found at i:2911525 original size:53 final size:52
Alignment explanation
Indices: 2911458--2911558 Score: 132
Period size: 53 Copynumber: 1.9 Consensus size: 52
2911448 ACTCCTTCCG
*
2911458 AAAAAATTTTAAAAA-TCTCAAACTGTAAAAAGTTTCAAAAATCGATGAACTGT
1 AAAAAATTTCAAAAATTC-CAAACTGTAAAAAGTTTCAAAAATCG-TGAACTGT
* * **
2911511 AAAAAGTTTCAAAAATTCCGAACTGTAAAAAGTTTTGAAAATCGTGAA
1 AAAAAATTTCAAAAATTCCAAACTGTAAAAAGTTTCAAAAATCGTGAA
2911559 AAATAAAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
52 4 0.10
53 36 0.86
54 2 0.05
ACGTcount: A:0.50, C:0.11, G:0.12, T:0.28
Consensus pattern (52 bp):
AAAAAATTTCAAAAATTCCAAACTGTAAAAAGTTTCAAAAATCGTGAACTGT
Found at i:2912865 original size:26 final size:26
Alignment explanation
Indices: 2912829--2912881 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2912819 GTTGACTTAG
**
2912829 GCATACAGAGTTCATTCTGAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2912855 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2912881 G
1 G
2912882 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2913359 original size:26 final size:25
Alignment explanation
Indices: 2913303--2913359 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
2913293 CTCCTTCCAA
*
2913303 AAAACATTTAAAAAATCTCGAAAAGT
1 AAAA-ATTTAAAAAATCTCGAAAAAT
*
2913329 AAAAATTTTAAAAATCAT-GAAAAAT
1 AAAAATTTAAAAAATC-TCGAAAAAT
2913354 AGAAAA
1 A-AAAA
2913360 CAAGTCGTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 18 0.67
26 9 0.33
ACGTcount: A:0.63, C:0.07, G:0.07, T:0.23
Consensus pattern (25 bp):
AAAAATTTAAAAAATCTCGAAAAAT
Found at i:2913765 original size:26 final size:26
Alignment explanation
Indices: 2913729--2913781 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2913719 GTTGACTTAG
*
2913729 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2913755 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2913781 G
1 G
2913782 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2915133 original size:714 final size:715
Alignment explanation
Indices: 2913757--2915213 Score: 2174
Period size: 714 Copynumber: 2.0 Consensus size: 715
2913747 CAGTCTAAGC
* *
2913757 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGTTTGCGGCAGCACATATGCGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGTTTGCAGCAGCACATATGCGGCT
* *
2913822 TGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAAC
66 CGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* * *
2913887 CGGACCGGCGGCATTGTGGTTCCGGTGATCGGGGGGGCCAGGGGGTATGCGCACATGATGTGCGA
131 CGGACCAGCGACATTGGGGTTCCGGTGATCGGGGGGGCCAGGGGGTATGCGCACATGATGTGCGA
*
2913952 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCACAAC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAAC
*
2914017 CCCTTAAACAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAACTGTCTAAAATTGG
261 CCCTTAAACAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAACTGTCTAAAATGGG
*
2914082 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTATGC
* * * * * *
2914147 ATGTGAACAAAAATATAAGGATCACGGCTACCAAGTTTGGGGTCAAAAATCCTTCCGAAAAAATT
391 AAGTCAACAAAAATACAAGGATCACAGCTACCAAGTTTGGGGCCAAAAATCCTCCCGAAAAAATT
* ** *
2914212 TTAAAAAATCTTGAACCGTAAAAAGTGTCAAAAATTGTGAGAAATAGAAAACGAGTCGTCTTGCC
456 TTAAAAAATCTCGAACCGTAAAAAGTGTCAAAAATAATGAAAAATAGAAAACGAGTCGTCTTGCC
2914277 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTG
521 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTG
*
2914342 GCACGCAAAAATATAAAGATGTACCTAAACCCACCTACCACCCTATTGATCCACAGCTTCCGCAT
586 GCACGCAAAAATATAAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACAGCTTCCGCAT
* * *
2914407 CCCATCTCTCTGG-CGGACGTAGTGCCTGCCCTCCCACCCG-CTCGTTTCGTCGGTTGGCTTAGG
651 CCCATCTCTCTGGCCGG-CGTAGTGCCCGCCCGCCCACCCGCCTCGTTTCATCGGTTGGCTTAGG
2914470 A
715 A
* * * *
2914471 ATACGGAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTT-CAGTAGCACATGCTG-GG
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-GGTTTGCAGCAGCACAT-ATGCGG
* ** * *
2914534 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCG-CTGGAGCATTGCCGGAG
64 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTC-GGAGCATCGCCGGAG
* * * *
2914598 AACCTGAGCAGCGACATTGGGGTTCCGGTGATC-GGGTGGCCAGGAGGGTGTGCGCACATGATGT
128 AACCGGACCAGCGACATTGGGGTTCCGGTGATCGGGGGGGCCAGG-GGGTATGCGCACATGATGT
* * *
2914662 GCGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
2914727 CACCCCCTTAAAGAGCATTTGAGATTTT-TCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 CAACCCCTTAAACAGCATTTGAGATTTTAT-AGGTTTGCTGCCAGTAGCCATTAAACTGTCTAAA
*
2914791 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAATTTTTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAA-TTTTT
* * * * * *
2914856 TTTTGCAAG-CCACAAAAATACAGGGATCTCATCTACCAAGTTTGGGGCCAAAATTCCTCCCGAA
385 TTATGCAAGTCAACAAAAATACAAGGATCACAGCTACCAAGTTTGGGGCCAAAAATCCTCCCGAA
* * *
2914920 AAAATTTTAAAAAATCTCGAACCTTAAAAAGTTTCAAAAATAATGAAAAATAGAAAACGAGTTGT
450 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTGTCAAAAATAATGAAAAATAGAAAACGAGTCGT
2914985 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * * *
2915050 GCATTGGCACGTAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
580 GAATTGGCACGCAAAAATATAAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACAGCTT
* * *
2915115 GCGCATCCCGTTTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGTCCACTCGTTTCATCGGTT
645 CCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCG--C-CTCGTTTCATCGGTT
*
2915180 GGCTTAGGT
707 GGCTTAGGA
*
2915189 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
2915214 GTTAGGCTGA
Statistics
Matches: 665, Mismatches: 67, Indels: 18
0.89 0.09 0.02
Matches are distributed among these distances:
713 12 0.02
714 586 0.88
715 22 0.03
718 45 0.07
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (715 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGTTTGCAGCAGCACATATGCGGCT
CGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
CGGACCAGCGACATTGGGGTTCCGGTGATCGGGGGGGCCAGGGGGTATGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAAC
CCCTTAAACAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAACTGTCTAAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTATGC
AAGTCAACAAAAATACAAGGATCACAGCTACCAAGTTTGGGGCCAAAAATCCTCCCGAAAAAATT
TTAAAAAATCTCGAACCGTAAAAAGTGTCAAAAATAATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTG
GCACGCAAAAATATAAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACAGCTTCCGCAT
CCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCCTCGTTTCATCGGTTGGCTTAGGA
Found at i:2915387 original size:25 final size:26
Alignment explanation
Indices: 2915359--2915407 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
2915349 GTTGACTTAG
* *
2915359 GCATACGGATTTCATT-CCAGTCTCA
1 GCATACGAAGTTCATTCCCAGTCTCA
2915384 GCATACGAAGTTCATTCCCAGTCT
1 GCATACGAAGTTCATTCCCAGTCT
2915408 AAGATCGGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTCA
Found at i:2916306 original size:26 final size:26
Alignment explanation
Indices: 2916256--2916308 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2916246 GTTGACTTAG
* *
2916256 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCAAATCTAA
* *
2916282 GCATACGGTGTTCATTCCAAATCTAA
1 GCATACGGAGTTCAATCCAAATCTAA
2916308 G
1 G
2916309 ATTAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCAAATCTAA
Found at i:2918085 original size:26 final size:26
Alignment explanation
Indices: 2918047--2918096 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
2918037 CACTTAGGCT
*
2918047 TACGGAGTACATTCCCAGTCTAAGCA
1 TACGAAGTACATTCCCAGTCTAAGCA
*
2918073 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTACATTCCCAGTCTAAG
2918097 ATCAGATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (26 bp):
TACGAAGTACATTCCCAGTCTAAGCA
Found at i:2918492 original size:901 final size:901
Alignment explanation
Indices: 2914471--2921036 Score: 8482
Period size: 902 Copynumber: 7.3 Consensus size: 901
2914461 TGGCTTAGGA
* * * * *
2914471 ATACGGAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTTCAGTAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCT
** * *
2914536 CGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCG-CTGGAGCATTGCCGGAGAA
66 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGTCGGAGAA
* * * ** *
2914600 CCTGAGCAGCGACATTGGGGTTCCGGTGATCG-GGTGGCCAGGAGGGTGTGCGCACATGATGTGC
130 CCTGACCGGCGGCATTGGGGTTCCGACGATCGAGG-GGCC-GGGGGGTGTGCGCACATGATGTGC
* * *
2914664 GATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
2914729 CCCCCTTAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
2914794 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAATTTTTAGCTGAATTTTTTTTT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTG
* * * * * *
2914859 TGCAAGCC-ACAAAAATACAGGGATCTCATCTACCAAGTTTGGGGCCAAAATTCCTCCCGAAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** *
2914923 ATTTTAAAAAATCTCGAACCTTAAAAAGTTTCAAAAATAATGAAAAATAGAAAACGAGTTGTCTT
452 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
2914988 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
2915053 TTGGCACGTAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
582 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** * *
2915118 CATCCCGTTTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGTCCACTCGTTTCATCGGTTGGC
647 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCG-CCCCTCGTTTCGTCGGTTGGC
* * * * * * * *
2915183 TTAGGTATACGAAGTTCATTCCCAGTCTAAGGTTAGGCTGAACTGAGGGTTACGGTGGCAGGATC
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGTAGCAGGATC
* * * *
2915248 GGTAGCAGGATTGGCAGCGTGCAAAGGGGGGACCCGGTCAATCCCCAGCTTGCGCATCCTGCCCC
776 GGT------A---GCA-C--GCAGA-GGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCC
* * * * *
2915313 TCTGGCTGCCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGATTTCATT-CC
828 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
*
2915377 AGTCTCAGC
893 AGTCTAAGC
* * * *
2915386 ATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGTAGCACATGCTGTGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCT
* ** * * *
2915451 AGGGCATGTGCTGGTGCCACATTTTTCTTCCCCAGGGCACCATCGTCGTAGCATCGTCGAAGAAC
66 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAAC
* * * ** * * * * *
2915516 TTGACCGGCGGCAATAGGGTTCTAACGATTGGGGGGGCCGAGGGGTGTGCGCAGATGATGTGCGG
131 CTGACCGGCGGCATTGGGGTTCCGACGA-TCGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
2915581 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGAACTCACACC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
2915646 CCCATAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
2915711 GACGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * **
2915776 ATGCCAACAAAAATACAAGGATCATGTCTACCATGTTTTGGGCCAAAACTCCTTTTG-AAAAATT
390 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
*
2915840 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
455 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
2915905 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGGATTTACAAGCCATAAAAATGGCATTG
520 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
2915970 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGGCTTGTGCAT
585 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* ** *
2916035 CCCGTCTCTCTAGCCGGTGTAGT----GCCCGCCTGCCCGTCCGCTCGTTTCGTCGGTTGGCTTA
650 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCG-CCCCTCGTTTCGTCGGTTGGCTTA
* * * * * * * * **
2916096 CGCATAGGGAGTTCATTCCCAGTGTAAGATCGGTCCAAACCGAGGGTTGCGGTAGTAGGATCGAC
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGTAGCAGGATCGGT
* * *** * * *
2916161 AGCACGCAAAGGGGGACCCGATCGATTTTCGGCTTGCCCATCCCGCCTCTATGGCCGGCTGAGCG
779 AGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
2916226 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAATCCCAGTCTAAGC
844 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * ** * *
2916284 ATACGGTGTTCATTCCAAATCTAAGATTAGATCGGATCGAGGGTTGCAGCAGCACATGC-GACGG
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTG--GG
* * ** *
2916348 -TCGGGCATGTGCTAGTGTCGTATTTTTCTTCGCCGGGGCACCA---T-----CA-C--CGGAGA
64 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
** * * *
2916401 ACCTGACCGGCGGCATTGGGGTTCCGGTGATCG-GGGGGCTGGGGGTGTGCGCACATGATGTGCA
129 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* ** *
2916465 ACGGGTGCTGGTACTTGGCCCTTATATTTTCCCCCTACCCCTCATCAAACCTCGAGAACTCACAC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
2916530 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
2916595 GGACACTTTTTTCAAATGGACACAAAATATTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
** **
2916660 CATGCCAACAAAAGA-ACAAGGATCACGTCTACCATTTTTGGGGCCAAAACTCCTTAAGAAAAAA
389 CATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * *
2916724 TTTTAAAAAATCTGGAACCGCAAAAAGTTTCAAAATTTGTGAAAAATAGAAAACGAGTCGTCTTA
453 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * **
2916789 CCATGAAACTTCATGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATATCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** *
2916854 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGC
583 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
2916919 ATCTCGTTTCTCTGGTCGACGTAGCGCCCACCCGCCCGCCCG---CTCGTTTCGTCGGTTGGCTT
648 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCCTCGTTTCGTCGGTTGGCTT
* ** * * * * * **
2916981 AGGCATACAGAGTTCATTCCCAGTCTAAGATC-GAAATGGACTGAGTGTTACAGCAATAGGATCG
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGAACTGAGGGTTGCGGTAGCAGGATCG
* * * * * *
2917045 GCAGCATGCGGAGGGGAAACCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
777 GTAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * * *
2917110 CGCCCGTATGCTCATTTCATCGGTTGACTT-GGCATACGAAGTTCATTCCCAGTCGAAGC
842 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * *
2917169 ATACGGAGTTCATTCCCAGTCTAAGACCGGACCAGACTGAGGGTTGTAGTAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCT
* * * ** *
2917234 TGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCATCGGAGCATCACCGGAGAAA
66 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAAC
* *
2917299 CTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCGAGGGGGGTGTGCGCACATGATGTGCG
131 CTGACCGGCGGCATTGGGGTTCCGACGATCGA-GGGGC-CGGGGGGTGTGCGCACATGATGTGCG
*
2917364 ATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * * *
2917429 CCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGCCTAAAATGA
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
** * *
2917494 GGACACTTTTTTCAAATGGTTGCAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTATG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
2917559 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCACAAA-TCCTTCCGAAAAAA
389 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTCCGAAAAAA
* * * * *
2917623 TTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAATCGTCTTG
453 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
2917688 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * *
2917753 TGGCACATAGAAATATGAAGATGTGCTTAAACCCACCTATCACCCTATCGAAT-CACGGCTTGCG
583 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG-ATCCACGGCTTGCG
* * * * *
2917817 CATCCCGTATCTCTGGCCGACGTAGTGCCCTCCCGCCTGCCCGCCCCTCATTCCGTCGGTTGGGT
647 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCCTCGTTTCGTCGGTTGGCT
* * *
2917882 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAATTGAGGGTTGTGGTAGCAGGATCG
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGTAGCAGGATCG
** * * *
2917947 GTAGCACATAGAGGGGGACACGGTCTATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAG
777 GTAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * * *
2918012 CGCCCGGACGCTCATTTCGTGGGTTCACTTAGGCTTACGGAGTACATTCCCAGTCTAAGC
842 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * * *
2918072 ATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACAGCAGCACGTGTTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCT
** * * * * * *
2918137 AAGGCTTGTGTTGGTGCCACATTTTTCTTCGTCGGGGAACCATCGCCAGAGCATTGTCGGAGAAC
66 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAAC
* * * * *
2918202 CTGGCTGGCGGCATTAGGGTTCCTACGATCGAGGGGCCGGGGGGTGTGCGCACGTGATGTGCGAT
131 CTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
*
2918267 GGGTGCTGGTACTCGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
196 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
2918332 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTATTTGAAATGGGG
261 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
2918397 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTTCA
326 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
** * * * * * *
2918462 CACCAACAAAAATACAAGCATCACGTCTACCAAGTTCGGGACCAAAACTCTTTTCAAAAAAATTT
391 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * *
2918527 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAACACAAGTCATCTTGCCA
456 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
2918592 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
521 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
2918657 CATGCAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCTATCCATGGCTTGCGCATC
586 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
** * * * *
2918722 CCACCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCGCC-CATTTCATCGATTGGCTTA
651 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCG-CC-CCTCGTTTCGTCGGTTGGCTTA
* * *** *
2918786 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCAACAGTAGGATCGGT
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGTAGCAGGATCGGT
* * * * * *
2918851 AGCACGCAGAGGGGGATCTGGTCGATCCCCAGCTTGCGCATCCAGCCCATCTGGCTGGCTGAGCG
779 AGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
2918916 CCCGCACGCTCGTTTGATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
844 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* *** * * ** *
2918974 ATACGAAGTTCATTTTGAGTCTAAGATCGGACTGGACCAAGGGTTGTGGCAGCCCATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCT
* * * ** * * * *
2919039 CGGGTAGGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATTGTCAGAGCATCATCGAAGAAC
66 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAAC
* **
2919104 CTGACCGGCGGCATTGGGGTTCCGACGATCTAGGGGCCGGGGGGGTGTGCGCACATGATGTAAGA
131 CTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGCC-GGGGGGTGTGCGCACATGATGTGCGA
*
2919169 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
2919234 CCCTTAAACAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTTTGAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
2919299 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
2919364 ATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCAAAAAATCCTTCTG-AAAAATT
390 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * *
2919428 TTAAAAAATC-CTGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTAGC
455 TTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
2919492 CATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
2919557 GGCAGGCAGAAATAGGAAGATGTACCTAAAGCCACCTACCACCCTATCGATCCACGGCTTGCGCA
584 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* **
2919622 TCCCGTCTCTCTGGCCGGCACAGTGCCCGCCCGCCTGCTCGCCCGCCCGCTCGTTTCGTCGGTTG
649 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-C--CT-GCCCGCCC-CTCGTTTCGTCGGTTG
*
2919687 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGA
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGTAGCAGGA
** * * * ** ** * **
2919752 TCGACAGCACGCAGAGGGGGACTC-GACTGATCCCCGGATTATGCATCATGCCCCTTTGGTAGGC
774 TCGGTAGCACGCAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* *
2919816 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACGTAGGCATACGAAGTTCATTCCCAGTCTAAGC
838 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * * * *
2919880 ATACGGAGTTTATTCTCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGTAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCT
* ** * * *
2919945 CGGGCATATGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATAGCCGGAGAA-
66 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAAC
** * * *
2920009 CTGACCAACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGAGGTGTGCGCACATGATGCGCA
131 CTGACCGGCGGCATTGGGGTTCCGACGATC-GAGGGGCCGGGG-GGTGTGCGCACATGATGTGCG
* * * * * *
2920074 ATGGGTGCTGGTACTTTGTCCATATATTGGCCCCCTAACCCTCATCAAACCTTGAGAGCTCACA-
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
2920138 CCCCTTAAAGAGCATTTGTGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
2920203 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
2920268 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
389 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * * * *
2920333 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAATTCAG-GAAAAATAAAAAACGACTCATCTTG
454 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC-GTGAAAAATAGAAAACGAGTCGTCTTG
* *
2920397 CAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * * *
2920462 TGGCAGGCAAAAATATCAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGTCATGCGC
583 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
2920527 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCTCGCCCGCTCGTTTTGTCGGTTGGCT
648 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCC-CTCGTTTCGTCGGTTGGCT
* ** ** * *
2920592 TAGGCATACGGAGTTCAATT-CTAGTCTAAGATC-GACC-AGACCAAGGGTTATGATAGCAAGAT
712 TAGGCATACGGAGTTC-ATTCCCAGTCTAAGATCAGACCGA-ACTGAGGGTTGCGGTAGCAGGAT
* * * * ** * * *
2920654 CGATAGCATGTAAAGGGGGACCCGACCAATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGACTG
775 CGGTAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
** * *
2920719 AGCGCCTACACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGC
840 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * * *
2920781 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCTGACCGAAGGTTACGGCAGCACATGCTAGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCT
* *
2920846 CGGGCATGTGCTGGTGCCAAATTTTTCTTCG-CTGGGGCACCATCATCGGAGCATCGTCGGAGAA
66 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCGGAGAA
* * * * * * * *
2920910 CCTGACTGGAGGCATTAGGATTCTGGCGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGA
130 CCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* ** * * *
2920975 TGGGTGCTAGTACTTGGCCCTTATATTATCCCCCTATCCCTGATCAAACCTTGAAAACTCAC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
2921037 TGTCATAACG
Statistics
Matches: 4910, Mismatches: 680, Indels: 137
0.86 0.12 0.02
Matches are distributed among these distances:
884 2 0.00
885 369 0.08
886 349 0.07
887 28 0.01
888 1 0.00
889 1 0.00
890 13 0.00
893 2 0.00
894 1 0.00
895 1 0.00
896 35 0.01
897 86 0.02
898 105 0.02
899 467 0.10
900 84 0.02
901 713 0.15
902 756 0.15
903 421 0.09
904 2 0.00
905 214 0.04
906 576 0.12
907 1 0.00
910 82 0.02
914 227 0.05
915 365 0.07
916 7 0.00
917 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAAC
CTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGTAGCAGGATCGGTAG
CACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
Found at i:2919882 original size:26 final size:26
Alignment explanation
Indices: 2919852--2919904 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2919842 GTTGACGTAG
2919852 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* * *
2919878 GCATACGGAGTTTATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2919904 G
1 G
2919905 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2920782 original size:26 final size:26
Alignment explanation
Indices: 2920753--2920805 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2920743 GTTGACTTAG
*
2920753 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2920779 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2920805 G
1 G
2920806 ATCAGACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2921641 original size:1 final size:1
Alignment explanation
Indices: 2921635--2921682 Score: 60
Period size: 1 Copynumber: 48.0 Consensus size: 1
2921625 AAAGTCAAAT
****
2921635 AAAAAAAAAAAAAAAAAATTTCAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
2921683 CCTGGAGCGG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 44 1.00
ACGTcount: A:0.92, C:0.02, G:0.00, T:0.06
Consensus pattern (1 bp):
A
Found at i:2921648 original size:26 final size:26
Alignment explanation
Indices: 2921606--2921678 Score: 85
Period size: 26 Copynumber: 2.8 Consensus size: 26
2921596 TCGGATTAAT
** **
2921606 AAAAAAAAAAATCAAAATCAAA-GTC
1 AAAAAAAAAAAAAAAAAAAAAATGTC
* *
2921631 AAATAAAAAAAAAAAAAAAAAATTTC
1 AAAAAAAAAAAAAAAAAAAAAATGTC
2921657 AAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAA
2921679 AAAACCTGGA
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
25 17 0.43
26 23 0.57
ACGTcount: A:0.84, C:0.05, G:0.01, T:0.10
Consensus pattern (26 bp):
AAAAAAAAAAAAAAAAAAAAAATGTC
Found at i:2921651 original size:29 final size:27
Alignment explanation
Indices: 2921603--2921680 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
2921593 TCGTCGGATT
**
2921603 AATAAAAAAAAAAATCAAAATCAAAGTCA
1 AATAAAAAAAAAAA--AAAAAAAAAGTCA
**
2921632 AAT-AAAAAAAAAAAAAAAAAATTTCA
1 AATAAAAAAAAAAAAAAAAAAAAGTCA
*
2921658 AAAAAAAAAAAAAAAAAAAAAAA
1 AATAAAAAAAAAAAAAAAAAAAA
2921681 AACCTGGAGC
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
26 11 0.26
27 18 0.43
28 10 0.24
29 3 0.07
ACGTcount: A:0.83, C:0.05, G:0.01, T:0.10
Consensus pattern (27 bp):
AATAAAAAAAAAAAAAAAAAAAAGTCA
Found at i:2921659 original size:32 final size:28
Alignment explanation
Indices: 2921606--2921682 Score: 82
Period size: 28 Copynumber: 2.6 Consensus size: 28
2921596 TCGGATTAAT
**
2921606 AAAAAAAAAAATCAAAATCAAAGTCAAATAAA
1 AAAAAAAAAAAAAAAAATCAAA---AAA-AAA
**
2921638 AAAAAAAAAAAAAAATTTCAAAAAAAAA
1 AAAAAAAAAAAAAAAAATCAAAAAAAAA
2921666 AAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAA
2921683 CCTGGAGCGG
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
28 18 0.46
29 3 0.08
32 18 0.46
ACGTcount: A:0.84, C:0.05, G:0.01, T:0.09
Consensus pattern (28 bp):
AAAAAAAAAAAAAAAAATCAAAAAAAAA
Found at i:2922094 original size:20 final size:20
Alignment explanation
Indices: 2922069--2922109 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
2922059 AAATCCACCA
2922069 GTTTCTGGGATTCTTCGCCG
1 GTTTCTGGGATTCTTCGCCG
*
2922089 GTTTCTGGGATTTTTCGCCG
1 GTTTCTGGGATTCTTCGCCG
2922109 G
1 G
2922110 AAACTGGGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.05, C:0.22, G:0.32, T:0.41
Consensus pattern (20 bp):
GTTTCTGGGATTCTTCGCCG
Found at i:2922116 original size:20 final size:20
Alignment explanation
Indices: 2922073--2922117 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
2922063 CCACCAGTTT
***
2922073 CTGGGATTCTTCGCCGGTTT
1 CTGGGATTCTTCGCCGGAAA
*
2922093 CTGGGATTTTTCGCCGGAAA
1 CTGGGATTCTTCGCCGGAAA
2922113 CTGGG
1 CTGGG
2922118 CAGGTCACCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.11, C:0.22, G:0.33, T:0.33
Consensus pattern (20 bp):
CTGGGATTCTTCGCCGGAAA
Found at i:2922657 original size:3 final size:3
Alignment explanation
Indices: 2922649--2922683 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
2922639 ATCTTACAAA
2922649 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
2922684 ATATATAACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:2922967 original size:1 final size:1
Alignment explanation
Indices: 2922957--2923072 Score: 97
Period size: 1 Copynumber: 116.0 Consensus size: 1
2922947 CAACTCAACA
* * * * ** ** **
2922957 TTTTTATTTTTTTTTTTTTTATTTTTGTTTTTTATTTTTTTGATTTTTTTTTGATTTTTTGATTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
** * * *
2923022 TTTTTTTGATTTTTTTTGTTTTTTTTTGTTTTTTTTTGTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
2923073 GCCGAAGCTC
Statistics
Matches: 89, Mismatches: 26, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 89 1.00
ACGTcount: A:0.06, C:0.00, G:0.07, T:0.87
Consensus pattern (1 bp):
T
Found at i:2922987 original size:20 final size:19
Alignment explanation
Indices: 2922958--2923072 Score: 122
Period size: 20 Copynumber: 5.7 Consensus size: 19
2922948 AACTCAACAT
2922958 TTTTATTTTTTTTTTTTTTA
1 TTTT-TTTTTTTTTTTTTTA
2922978 TTTTTGTTTTTTATTTTTTTGA
1 TTTTT-TTTTTT-TTTTTTT-A
** *
2923000 TTTTTTTTTGATTTTTTGA
1 TTTTTTTTTTTTTTTTTTA
*
2923019 TTTTTTTTTTGATTTTTTTTG
1 TTTTTTTTTT--TTTTTTTTA
*
2923040 TTTTTTTTTGTTTTTTTTTG
1 TTTTTTTTT-TTTTTTTTTA
2923060 TTTTTTTTTTTTT
1 TTTTTTTTTTTTT
2923073 GCCGAAGCTC
Statistics
Matches: 82, Mismatches: 7, Indels: 13
0.80 0.07 0.13
Matches are distributed among these distances:
19 15 0.18
20 34 0.41
21 26 0.32
22 7 0.09
ACGTcount: A:0.06, C:0.00, G:0.07, T:0.87
Consensus pattern (19 bp):
TTTTTTTTTTTTTTTTTTA
Found at i:2923227 original size:42 final size:41
Alignment explanation
Indices: 2923079--2923260 Score: 285
Period size: 41 Copynumber: 4.4 Consensus size: 41
2923069 TTTTGCCGAA
* * * *
2923079 GCTCCTCTAAACAGAGACTCAACGACTTTTG-AAAGTAAATT
1 GCTCCTCTCAACAGAGGCACCACGAC-TTTGAAAAGTAAATT
*
2923120 GCTCCTCTCAACAGAGGTACCACGACTTTGAAAAGTAAATT
1 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
2923161 GCTCCTCTCAACAGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATT
2923202 GCTCCTCTTCAACAGAGGCACCACGACTTTGAAAAGTAAATT
1 GCTCCTC-TCAACAGAGGCACCACGACTTTGAAAAGTAAATT
2923244 GCTCCTCTCAACAGAGG
1 GCTCCTCTCAACAGAGG
2923261 TACCNNNNNN
Statistics
Matches: 131, Mismatches: 8, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
40 4 0.03
41 87 0.66
42 40 0.31
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.24
Consensus pattern (41 bp):
GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATT
Found at i:2923250 original size:83 final size:82
Alignment explanation
Indices: 2923079--2923260 Score: 301
Period size: 83 Copynumber: 2.2 Consensus size: 82
2923069 TTTTGCCGAA
* * * * *
2923079 GCTCCTCTAAACAGAGACTCAACGACTTTTGAAAGTAAATTGCTCCTCTCAACAGAGGTACCACG
1 GCTCCTCTCAACAGAGGCACAACGACTTTGGAAAGTAAATTGCTCCTCTCAACAGAGGCACCACG
2923144 ACTTTGAAAAGTAAATT
66 ACTTTGAAAAGTAAATT
*
2923161 GCTCCTCTCAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTTCAACAGAGGCACCAC
1 GCTCCTCTCAACAGAGGCACAACGACTTTGGAAAGTAAATTGCTCCTC-TCAACAGAGGCACCAC
2923226 GACTTTGAAAAGTAAATT
65 GACTTTGAAAAGTAAATT
2923244 GCTCCTCTCAACAGAGG
1 GCTCCTCTCAACAGAGG
2923261 TACCNNNNNN
Statistics
Matches: 93, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
82 43 0.46
83 50 0.54
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.24
Consensus pattern (82 bp):
GCTCCTCTCAACAGAGGCACAACGACTTTGGAAAGTAAATTGCTCCTCTCAACAGAGGCACCACG
ACTTTGAAAAGTAAATT
Found at i:2924670 original size:26 final size:26
Alignment explanation
Indices: 2924634--2924686 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2924624 TCGGTAAGAT
*
2924634 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2924660 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2924686 C
1 C
2924687 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2926441 original size:26 final size:26
Alignment explanation
Indices: 2926412--2926462 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2926402 GGTCCGATCA
2926412 TAGACTAGGAATGAACTCCGTATGCT
1 TAGACTAGGAATGAACTCCGTATGCT
*
2926438 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
2926463 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCT
Found at i:2926889 original size:886 final size:886
Alignment explanation
Indices: 2925538--2929767 Score: 5372
Period size: 886 Copynumber: 4.7 Consensus size: 886
2925528 CTGGTACAAT
* *
2925538 CTTAGACTGGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACTGAAGCGTGCGGTGTGCTC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-G-AGCGTACGG-GTGCTC
* * * * * *
2925603 AGTCCGGCCAGA--GGTGGGAGTACGCAAGTCGGGGATCGGCCAGGTCCCCCGTCTACATGCTGC
63 AG-CTGGCCAGAGGGGTGGGA-TGCGCAAGCCGGGGATCGACCGGGT--CCC--CT-CGT-CTGC
* * * * **
2925666 GATCCTGCTGTCGCAACGCTCCGGTCTGGTCTGATC-TAGACCAGGGAATGAACTCCGTATAACT
120 -A---TGCTGTCGCAACCCT-CAGTCCGGTCTGATCTTAGA-CTGGGAATGAACTCCGTATGCCT
* * *
2925730 AAGCCAACCGATGAAACGAGCGGGCGGGC-GGGCGGGCACTACGACGGCTAGAGAGACGGGATGT
179 AAGCCAACCGATGAAACGAG-GGGCGGGCAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* *
2925794 GCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTTTGCATGCCAAT
243 GCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
2925859 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
308 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * * *
2925924 AGACGACTCATTTTTTATTTTTCAAGATTTTCGAAACTTTTTGCGGTTC-AGATTTTTTAAAATT
373 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATT
* *
2925988 TTTTCGGAAGGAGTTTTGGCCGCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAC
438 TTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
2926053 -AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
502 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
2926117 TTTCAGACAC-TTAATGGCTACTGGCAGGAAACTTGTAAAATCTCAAATGGTCTTTAAGGGGGTG
567 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
2926181 TGAGTTCTCGAGGTTTGACGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGC
632 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
*
2926246 ACATCATGTGCGCACACCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
697 ACATCATGTGCGCACACCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * *
2926311 CCGGCAATGCTCCGTGTTGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCAAGCCCA
762 CCGGCGATGCTCCGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCA
*
2926376 GCATGTGCTGCCGTAACCCTTGGTCCGGTCCGATCATAGACTAGGAATGAACTCCGTATG
827 GCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATCATAGACTAGGAATGAACTCCGTATG
* *
2926436 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATACGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGC
2926501 TGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGACCGGGT-CCC-CGTCTGCATGCTGTCGCA
66 TGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCTCGTCTGCATGCTGTCGCA
* * * *
2926564 ACCCTCAGTCCAGTTTGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACTGATGAAAC
131 ACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC
* * *
2926629 GAGTGGGCGGGCAGGTGGGCGGGTACTATGCCGGCCAGAGAGACGGGATTCGCAAGCCATGGATC
196 GAG-GGGCGGGCA---GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATC
*
2926694 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCA-TTTTATGGC
257 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* * *
2926758 TTGTAAATTCATACAATGGTCCCTTAAGCCCTCACGTGAAGTTTAATGACAAGACGACTCGTTTT
322 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* *
2926823 CTATTTTTTCATGATTTTTG-AACTTTTTGCAGTTCGGGAATTTTTAAAATTTTTTGGAAAGGAG
387 CTA-TTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTGG-AAGGAG
* * *
2926887 TTTTGGCCCCAAGCTTGGTAGACGTTGATTC-TGTATTTTTGTAGGCATGCACAAAAAAATTCAG
450 TTTTGGCCCCAAACTTGGTAGACG-TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
*
2926951 CTAAAAACTCG-AGTGTACAAGATTTGGTGACCA-TTGAAAAAAGTGTCCCCCATTTCAGACACT
514 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCCATTTCAGACACT
* * * *
2927014 TTAATGGCTACGGGGAG-AAACTTGTAAAATCTCAAATGGTCTTTAA-GGGGTGTGAGTTCTCGA
578 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
2927077 GGTTTGACGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGC
643 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* *
2927142 GCACACCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCAATGCT
708 GCACACCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCT
* *
2927207 CCGGTGTTGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCAAGCCCAGCATGTGCTG
773 CC-GTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTG
*
2927272 CCGTAACCCTTGGTCCGGTCCGATCATAGACTAGGAATGAACTCCGTATG
837 CCGCAACCCTTGGTCCGGTCCGATCATAGACTAGGAATGAACTCCGTATG
* *
2927322 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATACGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGC
*
2927387 TGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATCGACCGGGT-CCC-CGTCTGCATGCTGTCGCA
66 TGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCTCGTCTGCATGCTGTCGCA
* * *
2927450 ACCCTCAGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACTGATGAAAC
131 ACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC
* * *
2927515 GAGTGGGCGGGCAGGTGGGCGGGTACTATGCCGGCCAGAGAGACGGGATTCGCAAGCCATGGATC
196 GAG-GGGCGGGCA---GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATC
*
2927580 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGC
257 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* * *
2927645 TTGTAAATTCATACAATGGTCCCTTAAGCCCTCACGTGAAGTTTAATGACAAGACGACTCGTTTT
322 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* *
2927710 CTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGGGAATTTTTAAAATTTTTTGGAAAGGAGT
387 CTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTGG-AAGGAGT
* * *
2927775 TTTGGCCCCAAGCTTGGTAGACGTGATTCTTGTATTTTTGTAGGCATGCACAAAAAAATTCAGCT
451 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
*
2927840 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTA
516 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * *
2927905 ATGGCTACGGGGAGGAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
581 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
2927970 TTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
646 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * *
2928035 CACCCCTCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCT
711 CA-CCC-CCC-GACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCT
* * *
2928100 CCGGTAATGTTGCCCCGATGAAGAAAAATGCGGCA-CAACACATGCCCGAGCCCAGCATGTGCTG
773 CC-GTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTG
* * * * * * *
2928164 CTGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGGATGAACTCTGTATG
837 CCGCAACCCTTGGTCCGGTCCGATCATAGACTAGGAATGAACTCCGTATG
* * * **
2928214 CTTAGACTGGGAATGAACTCCATATGCCTCAGTCAACCCACGAAACGAACGTGTGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGC
* * * *
2928279 TGGCCAAAGGGGTGGGATGCGCAAGCTGGGGGTGGGA-CGGGTCCCTCTCTGCATGCTGTCGATC
66 TGGCCAGAGGGGTGGGATGCGCAAGCCGGGGAT-CGACCGGGTCCC-CTC-G--T-CTG-C-A--
* * * * * * *
2928343 CTACTGCCACAACCCTCGGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAGGCCA
121 -TGCTGTCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
2928408 ACCGACGAAAC-A--AGCGGGCA-GGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGTAAGTC
185 ACCGATGAAACGAGGGGCGGGCAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
2928469 ATGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATTTTCATATTTCTGCATGCCAATGCCATTT
250 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
2928534 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACAAC
315 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * ** *
2928599 TTGTTTTCTGTTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAAAAATTTCGG
380 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTT-AAAATTTTTTGG
* * * * * *
2928664 AAGGA-TTTTTGCCCCAAACATGGTAGACGTCATCCTTGTCTTTTTTTTGGCATGCACAAAAAGA
444 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
2928728 TTCAGCAAAAAACTC-----G---AAG----TGT-A-CATTTGAAAAAAGTGTCCCCATTTCAAA
509 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* ** * * *
2928779 CACCTTAATCACTACTGACAGCAAACCTATAAAATCTCAAATGCTAATGCTCTTTCAGGGGGTGT
574 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC--A----AATGCTCTTTAAGGGGGTGT
* *
2928844 GAGTTCTCGAGGTTTGATGAGGGAAAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTCGC
633 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA-TCGC
* ** ** *
2928909 ACATCATGTGCGCACACCCCCCGGCCCCCCGATCACCGGAATGCTAATGCCGCCGGTCAGGTTCT
697 ACATCATGTGCGCACACCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* ** * * * *
2928974 CCGACGATGCTCCCACGATGGTGCCCCGATGAAGAAAAATGCTGCACCAGCACACGCCCGAGCCC
762 CCGGCGATGCT-CCGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCC
* *
2929039 AGCATGTGCTGCCACAACCCTTGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTA
826 AGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATC-----------AT--A----G-A--C-TA
2929104 GGCTGGGAATGAACTCCGTATG
870 -----GGAATGAACTCCGTATG
* **
2929126 CTTACG-CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGACGCTCAG
1 CTTA-GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAG
* * * * * * * *
2929190 CCGGACAGAGGGGTGGGATGTGTAAG-CTGGGACCGATCGGGTCCCCCTCTGTCTGC-TGCCGAT
65 CTGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGACCGGGT-CCCCTC-GTCTGCATGCTG-T
* *
2929253 CCTGCTACCATAACCCT-AGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATAGGCCTAAG-
127 -C-G----C--AACCCTCA-GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *
2929316 ---CC-----AAC------C--G-A---CGGGCACTACGTCGGCCAGAAAGACGGAATGCGCAAG
183 CAACCGATGAAACGAGGGGCGGGCAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
2929361 CCGTGGATCGATAGGGTGGCAGGTGGGTTT-GGCACATCTTCATATTTCTG-AGTGCCAATCCCA
248 CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-TGCCAATGCCA
2929424 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
312 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
2929489 GACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
377 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* *
2929554 AGGAAAGCGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
442 -GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
2929619 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
506 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
2929684 AAACACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
571 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
2929749 TTCTCAAGGTTTGAT-AGGG
636 TTCTCGAGGTTTGATGAGGG
2929768 GAATGAACTC
Statistics
Matches: 2993, Mismatches: 235, Indels: 205
0.87 0.07 0.06
Matches are distributed among these distances:
881 55 0.02
882 58 0.02
883 22 0.01
885 322 0.11
886 737 0.25
887 317 0.11
888 75 0.03
889 41 0.01
890 86 0.03
891 3 0.00
892 175 0.06
893 231 0.08
894 135 0.05
895 94 0.03
896 224 0.07
897 12 0.00
898 45 0.02
899 6 0.00
900 8 0.00
901 5 0.00
902 45 0.02
903 2 0.00
904 66 0.02
906 4 0.00
907 5 0.00
908 64 0.02
909 2 0.00
910 2 0.00
911 58 0.02
912 93 0.03
913 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (886 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGC
TGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCTCGTCTGCATGCTGTCGCA
ACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC
GAGGGGCGGGCAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATA
GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTGGAAGGAGTTTTGG
CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
CCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGTGATG
GTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
TTGGTCCGGTCCGATCATAGACTAGGAATGAACTCCGTATG
Found at i:2927327 original size:26 final size:26
Alignment explanation
Indices: 2927298--2927348 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2927288 GGTCCGATCA
2927298 TAGACTAGGAATGAACTCCGTATGCT
1 TAGACTAGGAATGAACTCCGTATGCT
*
2927324 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
2927349 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCT
Found at i:2928239 original size:26 final size:26
Alignment explanation
Indices: 2928188--2928240 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2928178 CCGGTCCGAT
* * **
2928188 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
2928214 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
2928240 C
1 C
2928241 CTCAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:2929103 original size:26 final size:25
Alignment explanation
Indices: 2929081--2929152 Score: 126
Period size: 26 Copynumber: 2.8 Consensus size: 25
2929071 GATCTTAGAT
2929081 TGGGAATGAACTCCGTATGCTTAGGC
1 TGGGAATGAACTCCGTATGCTTA-GC
2929107 TGGGAATGAACTCCGTATGCTTACGC
1 TGGGAATGAACTCCGTATGCTTA-GC
2929133 TGGGAATGAACTCCGTATGC
1 TGGGAATGAACTCCGTATGC
2929153 CTAAGTCAAC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (25 bp):
TGGGAATGAACTCCGTATGCTTAGC
Found at i:2930696 original size:25 final size:25
Alignment explanation
Indices: 2930668--2930715 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
2930658 TCCGATCTTA
2930668 GACTAGGAATGAACTCCGTATGCTT
1 GACTAGGAATGAACTCCGTATGCTT
* *
2930693 GACTGGGAATGAATTCCGTATGC
1 GACTAGGAATGAACTCCGTATGC
2930716 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (25 bp):
GACTAGGAATGAACTCCGTATGCTT
Found at i:2931600 original size:26 final size:26
Alignment explanation
Indices: 2931563--2931615 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2931553 CCAATCTGAT
*
2931563 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
2931589 CTTAGACGGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
2931615 C
1 C
2931616 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCGTATG
Found at i:2932790 original size:512 final size:514
Alignment explanation
Indices: 2931826--2932841 Score: 1655
Period size: 512 Copynumber: 2.0 Consensus size: 514
2931816 GCACTACGTT
* * **
2931826 GGCCAGAGAGATGGGATGCGCAAGCCGTGGATCAATAGGGTGGCAGGTTGGTTTAGGCACATCTT
1 GGCCAGAGAGACGGGATGCGCAAGCCATGGATCAATAGGGTGGCAGGAAGGTTTAGGCACATCTT
*
2931891 CATATTTCTGCATGCCAATGCCATTTTGATGGCTTGCAAATTCATACAACGGTCCCTTAAGCCTT
66 CATATTTCTACATGCCAATGCCATTTTGATGGCTTGCAAATTCATACAACGGTCCCTTAAGCCTT
*
2931956 CACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACCTTTTACGG
131 CACATGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACCTTTTACGG
* * *
2932021 TTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCAAAAATTTGTAGACTTGATCCCTG
196 TTCAGAATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCAAAAATTGGTAGACGTGATCCCTG
*
2932086 TATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTGCAAGATTTTGTGACCA
261 TATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCA
*
2932151 TTTGAAAAAAGTGTCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
326 TTTGAAAAAAGTGTCCCATTTCAAACACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAA
*
2932216 ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGTCCAATATAAGGGCCA
391 ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
2932281 AGTACCAGCACCCATCGCACATCATGTGAGCACA-CCCCCCCGG-ACCCCCCGATCGTC
456 AGTACCAGCACCCATCGCACATCATGTGAGCACAGCCCCCCCGGCACCCCCCGATCGTC
* * * *
2932338 GGCCAGAGAGACGGGATGCGCGAGCTATGGATCGATAGGGTGGTAGGAAGGTTTAGGCACATCTT
1 GGCCAGAGAGACGGGATGCGCAAGCCATGGATCAATAGGGTGGCAGGAAGGTTTAGGCACATCTT
* * * *
2932403 CATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
66 CATATTTCTACATGCCAATGCCATTTTGATGGCTTGCAAATTCATACAACGGTCCCTTAAGCCTT
*
2932468 CACATGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC-AAACTTTTTACGG
131 CACATGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACCTTTTACGG
* * * * *
2932532 TTC-GAAATTTTTTAAAATATTTTT-GGAAGGAGTTTTGGCCCCAGACTTGGTAGACGTGATCCT
196 TTCAG-AATTTTTTAAAAT-TTTTTCAGAAGGAGTTTTGGCCCAAAAATTGGTAGACGTGATCCC
* * *
2932595 TGTATTTTTTTTGGCATGTACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGAC
259 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * *
2932660 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTCCTACTGGCAGCAAACTTGTAAAATCT
324 CATTTGAAAAAAGTGT-CCCATTTCAAACACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCT
*
2932725 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
388 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
2932790 CCAAGTACCAGCACCCATCGCACATCATGTGCGTACAGCCCCCCCGGCACCC
453 CCAAGTACCAGCACCCATCGCACATCATGTGAGCACAGCCCCCCCGGCACCC
2932842 TCGATCACTG
Statistics
Matches: 464, Mismatches: 35, Indels: 8
0.92 0.07 0.02
Matches are distributed among these distances:
510 1 0.00
511 136 0.29
512 314 0.68
513 9 0.02
514 4 0.01
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.30
Consensus pattern (514 bp):
GGCCAGAGAGACGGGATGCGCAAGCCATGGATCAATAGGGTGGCAGGAAGGTTTAGGCACATCTT
CATATTTCTACATGCCAATGCCATTTTGATGGCTTGCAAATTCATACAACGGTCCCTTAAGCCTT
CACATGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACCTTTTACGG
TTCAGAATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCAAAAATTGGTAGACGTGATCCCTG
TATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCA
TTTGAAAAAAGTGTCCCATTTCAAACACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGTGAGCACAGCCCCCCCGGCACCCCCCGATCGTC
Found at i:2933912 original size:26 final size:26
Alignment explanation
Indices: 2933883--2933934 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
2933873 CCGGTCCGAT
* *
2933883 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
2933909 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
2933935 TCAAAGTCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:2934088 original size:904 final size:904
Alignment explanation
Indices: 2932337--2939348 Score: 8819
Period size: 904 Copynumber: 7.7 Consensus size: 904
2932327 CCCCGATCGT
* ** **
2932337 CGGCCAGAGAGACGGGATGCGCGAGCTATGGATCGATAGGGTGGTAGGAAGGTTTAGGCACATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
2932402 TCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
66 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * * * *
2932467 TCACATGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTCAAACTTTTTACG
131 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCA
** *
2932531 GTTCGAAATTTTTTAAAATATTTTT-GGAAGGAGTTTTGGCCCCAGACTTGGTAGACGTGATCCT
196 GTTCGGGATTTTTTAAAAT-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * *
2932595 TGTATTTTTTTTGGCATGTACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGAC
260 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
** *
2932660 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTCCTACTGGCAGCAAACTTGTAAAATCT
325 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
2932725 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
390 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * * *
2932790 CCAAGTACCAGCACCCATCGCACATCATGTGCGTACAGCCCCCCCGGCACCCTCGATCACTGGAA
455 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCCCCGATCGCCGGAA
* * ** **
2932855 CCACAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATG
519 CCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG
* *
2932920 CGGCACCAACACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGA
584 CGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGA
**
2932985 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAA
649 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * *
2933050 CGAGCGTGCGGGTGCTCAGCCAGCTAGAGGGGCGGGATGCGTAAGCCGAGGATCGGTCGGGTCCC
714 CGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCC
* * * * * *
2933115 CCTCTACGTGCTACCGATCCTACTGTCGCAACCCTCA-GTCTGGTCCGATCTTAGACTAGGAATG
779 CCTCTACGTGCTACCGATCCTGCTGCCACAACCCT-AGGTCCGGTCTGATCTTAGACTGGGAATG
* * *
2933179 AACTCCGTATGCCTAAACCAACCGATGAAACGAACGGGCGATCGGGCAGGCGGGCACTATGC
843 AACTCCGTATGCCTAAGCCAACCGATGAAACGAACGGGCGATCGGGCGGGCGGGCACTACGC
*
2933241 CGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
2933306 TCATATTTCTGCATGCCAATGCCATTTTTATTGCTTGTAAATTCATACAATGGTCCCTTAGGCCT
66 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * ** * *
2933371 TCACGTGAAGTTTCATGGCAACATGACTCAATTTCTATTTTTCACGATTTTTGAAACTTTTTGTA
131 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCA
* * * *
2933436 CTTTGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
196 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
** * * *
2933501 GTATTTTTGTTACCATGCATAAAAAAATTCAGCTAAAAACTCAAACTGTACAAGATTTTGTGACC
261 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* *
2933566 ATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCGGCAAACCTGTAAAATCTC
326 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* **
2933631 AAATGCTCTTTAAGAGGGTGTGACCTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
391 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * *
2933696 CAAGTACCGGCACCCATCGTACATCATGTGCGCACACCCCCCCGGCCCCCCCGATTGCCGGAACC
456 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACC
* * * ** *
2933761 CCAATGCCGTCGATCAGGTTCTCCGGC-ATAACTCCGGCGATGGTGCCCCGGTGAAGAAAAATGT
521 CCAATGCCGTCGGTCAGGTTCTCCGGCGAT-GCTCCGACGATGGTGCCCCGACGAAGAAAAATGC
* * * *
2933825 GGCACCAACACTTGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCGGTCCGATCTTAGAT
585 GGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
* * * * **
2933890 TGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGTCAAAGTCATCCCATAAAAC
650 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * **
2933955 GAGCGTGCGGGTGCTCAGCCGGCTAGAGGGGTGGGATGCGCAAGCCAGGGATCGGCCGATTCCCC
715 GAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC
* ** * * *
2934020 CTCTACATGCTGTCGATCCTGCTACCGCAACCCTAGGTCTGGTCTGATCTTAGACTGGGAATGAA
780 CTCTACGTGCTACCGATCCTGCTGCCACAACCCTAGGTCCGGTCTGATCTTAGACTGGGAATGAA
* * * * * * * *
2934085 CTCCGTATGCCTAAGCCAACCGACGAAATGATCGGGC-AGGCGGGTGGGCAGGCGCTAAGC
845 CTCCGTATGCCTAAGCCAACCGATGAAACGAACGGGCGA-TCGGGCGGGCGGGCACTACGC
* * * *
2934145 CAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGTTGGTGGGTGGGTTTAGTCACATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
2934210 TCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTTCCTTAAGCCT
66 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * *
2934275 TCACGTGAAGTTTAACGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCG
131 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCA
* * * *
2934340 GTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTACATGTGATCCTT
196 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* * *
2934405 GTATTTTTGTTGCCATGCACAAAAAAATTCAGCTAAAAACTCAAACTGTACAAGATTTTGTGACC
261 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* ** *
2934470 ATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTATCAGCAAACCTGTAAAATCTG
326 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* *
2934535 AAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGC
391 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * *
2934600 CAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCGG-CCCCTCGATCGCCGAAACC
456 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACC
* ** * *
2934663 CCAATGTCGTCGGTCAGGTTCTCTAGCGATGCTCCGACGATGGTGCCCTGGCGAAGAAAAATGTC
521 CCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG-C
* * *
2934728 -GCACCAACACAAGCTCGAGCCCAACATGTGCTGCCGCAACCCT---T---G---G-TC-----C
585 GGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
*
2934777 --GG--T----T-CG-AT-CTTAGACTGGGAATGAACTCCGTGTGCCTAAGTCAACCCACGAAAC
650 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * ** *
2934831 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAAGCGCAAGCCAAGGATCGGTTGGGTCCCC
715 GAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC
** * * * *
2934896 CTCTACGTGCTATTGATCCTGCTACTACAACCCTCA-GTCCGGTCTGATCTTAGACTGAGAATGG
780 CTCTACGTGCTACCGATCCTGCTGCCACAACCCT-AGGTCCGGTCTGATCTTAGACTGGGAATGA
2934960 ACTCCGTATGCCTAAGCCAACCGATGAAACG-A-----G-T-GGGCGGGCGGGCACTACGC
844 ACTCCGTATGCCTAAGCCAACCGATGAAACGAACGGGCGATCGGGCGGGCGGGCACTACGC
**
2935013 CCACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
** *
2935078 TCATATTTCTGTGTGCCAATGACATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
66 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * *
2935143 TCACGTGAAGTTTCATGGGAAGACCACTGGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-AA
131 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCA
*
2935207 GGTTCGGGA-TTTTTAAAATTTTTTCGGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCT
196 -GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * * *
2935271 TATATCTTTGTGGGCATGCGCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
260 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
2935336 CATTTGAAAAAAGTGTCCCCATTTCTA-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
325 CATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
2935400 TCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
389 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * *
2935465 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCTGACCCCTCCGATCGTCGGAA
454 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAA
* ** * * **
2935529 CCCCAATGTCACCAGTCAGGTTCTCCGGCGATGCTCCGACGATGTTGCCCCGGGGAAGAAAAATG
519 CCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG
* * * * * * *
2935594 CGGTACCAACACATGCCCGATCCCAGCATATGCTACCGCAACCCACGGTTCGATCCGATCTTAGA
584 CGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGA
** * * * * *
2935659 CTGATAATTAACTCCGTATGTTTAGACTAGGAGTGAACTCCGTATGCCTAAGTCAACACACGAAA
649 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * *
2935724 CGGGCGTGCGGGTGCTCAGCCGACAAGAGGGGCTGGATGCGCAAGCTGGGGATCGGTCGGCTCCC
714 CGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCC
* * * * * * * *** * *
2935789 CCTCAATGTGCTGCCAATCCTACTGTCGCAACCCTCCATTCAGTCTGATCTTAGACTGGGAATGA
779 CCTCTACGTGCTACCGATCCTGCTGCCACAACCCTAGGTCCGGTCTGATCTTAGACTGGGAATGA
* *
2935854 ACTCCGTATGCCTAAGCCAACCGATGAAACG-A-----G--CGGACGGGCGGGCACTACGT
844 ACTCCGTATGCCTAAGCCAACCGATGAAACGAACGGGCGATCGGGCGGGCGGGCACTACGC
* *** * * *
2935907 CGACCAGAGAGACAAAATGCGCAAGCCGTGGATCGATAGGGTGGTAGGCGGGTTTAGGTAAATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
2935972 TCATATTTCTGCATGCCAATGCCATTCTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
66 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * *
2936037 TCACGTGAAGTTTCATGGGAGGACGACTCGTTTTTTATTTTTCATGATTTTTGAAAC-TTTTGGA
131 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCA
* * * * *
2936101 GGTTCGGGATTTTTTAAAATTTTTTCGGATGGAATTCTGGCCCCAAACTTTGTACACGTGATCCT
196 -GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* *
2936166 TTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTAAC
260 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
2936231 TATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCT
325 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * * * *
2936296 CAAATGCTCATTAAGGGAGTGTGAGTTCTCAAGGTTTAATGAGGGATAGGGGGCTAATATAAGGG
390 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * *
2936361 GCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCACCCCCGATCGTCGAAAC
455 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAAC
** * * ** *
2936426 CCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGCACCTCGACGAAGAAAAATGC
520 CCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC
* * * * * * *
2936491 GGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTGGTCTGATCTTATAC
585 GGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
2936556 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
650 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * *
2936621 AAGCGTGCGGGTGCTCAGCCAGCCAGAAGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCTCC
715 GAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC
* * * *
2936686 CTCTGCGTGCTACCAATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAA
780 CTCTACGTGCTACCGATCCTGCTGCCACAACCCTAGGTCCGGTCTGATCTTAGACTGGGAATGAA
* ** * ** * *
2936751 CTCCGTATACCTAAGCCAACCGACAAAACGAACGAGCGGGCGAGCGGGTGGGCACTACGC
845 CTCCGTATGCCTAAGCCAACCGATGAAACGAACGGGCGATCGGGCGGGCGGGCACTACGC
* * * *
2936811 TGGCCAGAGAGACAGGATGCGCAAGCCATGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
2936876 TCATATTTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTTCCTTAAGCCT
66 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * ** *
2936941 TCACGTGAAGTTTCATGGCAAGACGAATCATTTTCTATTTTTCATGATTTTCAAAACTTTTTGCG
131 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCA
* * * *
2937006 GTTCAGGATTTTTTTAAATTTTTTTGGAAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTT
196 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* * *
2937071 GTATTTTTGTT-GCAAGCACAAAAAAATTTACCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
261 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* * * * *
2937135 ATTTGATAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCGGCAAACCTATGAAATCTC
326 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
*
2937200 AAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
391 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * * *
2937265 CAAGTACCAGCACCCATCACACATCATGGGCGCACACCCCCCCGGCCCCCCCGATTGTCGAAACC
456 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACC
* * * * *
2937330 CCAATGCCGTCGGTCAGGTTGTCCGGTGATGCTTC-AGCGATGGTGCCCCGACAAAGAAAAATAC
521 CCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGC
* * * * * *
2937394 GGCACCAGCACATGCCTGAGCCCAGTATGTGCTACTGGAACCCTCGGTCTGATCCGATCTTAGAC
585 GGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--TC-G----G-TC-----C
*
2937459 TAGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
635 ---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * ** * * * *
2937524 CGTATGCCTAAGTGAACCCATGAAATTAGCGTGCGGGCGTTCAGCCGGCTAGAGGGGTGGGATGC
689 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * * * * * * * *
2937589 ACAAGTCGAGGATCAGTTGGGTCCCCTTCTACGTGTTACCGATCTTGCTGCCATAACCCTCGGTC
754 GCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGCCACAACCCTAGGTC
* * *
2937654 CAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG-G-
819 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACGGGCGA
*
2937716 -CGGGCGGGCGGGCACTACAC
884 TCGGGCGGGCGGGCACTACGC
* *
2937736 CGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*** *
2937801 TCATATTTCTTTGTGCCAATGCCATTTTTATGGCTTGTAAATTCA-ACAATGGTCACTTAAGCCT
66 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * *
2937865 TCACGTGAAGTTTCATAGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTCGCA
131 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCA
* * * * * *
2937930 TTTCAGGATTTTTTAAAATTCTTTCAGAAAGAGCTTTGGCCCCAAACTTGGTAGACGTGATCCTT
196 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* *
2937995 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAGTTGAAGTGTACAAGATTTTGTGACC
261 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* *
2938060 ATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACGTGTAAAATCTC
326 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* ** * * *
2938125 AAATGCTCTTTAAGGGGGGGTGAGTTCTTAAGGTTTGTTGAGGGATAGGGGGCCAATAGAATGGC
391 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * *
2938190 CAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCCCCGG-CCCCCTGATCACCGGAAC
456 CAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCCCCGATCGCCGGAAC
** *
2938254 CCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC
520 CCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC
* * * * **** * * * * **
2938319 GGCACCAGCACATGCCCGAGCCTAGTATGTGCTGTCATGGCCCTTGATTCGATTTGATCTTAGAC
585 GGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
* * * *
2938384 TGGGAATGAACTCTGTATGCTTAGGCTGGGAATGAACTCCGTATCCCTAAGTCAATCCACGAAAC
650 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* ** * * * * ** **
2938449 GAGAGTGCGGGCACTCAGCCGGCCAGAGGGGCAGGACGTGTAAGATGGGGATCAATCGGGTCCCC
715 GAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC
** * *** * * *
2938514 CTCTGTGTCCTGTTGATCCTGCTGCCACAACCCTTGATCCGGTCTGATCTTAGACTGGGAATAAA
780 CTCTACGTGCTACCGATCCTGCTGCCACAACCCTAGGTCCGGTCTGATCTTAGACTGGGAATGAA
* * * * * * * *
2938579 CTCTGTATGCCTAAGCCAACCAATGAAATGAGCGAGCGAGCGTGCGGGCAGGCGGGCATTACGT
845 CTCCGTATGCCTAAGCCAACCGATGAAACGAACGGGCGA---T-CGGGCGGGCGGGCACTACGC
* * *
2938643 CGGCCAGAAAGACGGGATGCGCAAGGCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
1 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
2938708 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAGTCATACAATTTATATTTATATCG
66 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA-T--T-C-----------ATA-C-
** * *
2938773 ATAGGGTGGTAGGTGGGTTTAGGCATAATGTAAGCCTTCACGTGAAGTTTCATTGCAAGATGACT
114 --A-------A--T-GG--T---C--CCT-TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * *
2938838 TGTTTTATATTTTTTACGATTTTTGAAACTTTTTGCGGTTC-GGATTTTTTAAAATTTTTTTCGG
159 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAA-TTTTTTCGG
*
2938902 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCACAAAAAAA
223 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * *
2938967 TACAGCTAAAAACTCGAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAAA
288 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
2939032 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
353 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
2939097 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCAT
418 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * *
2939162 GTGCGCACACCCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGGT
483 GTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGC
* * * * *
2939227 GATGCT-CTAGCGATGGTGCCCCGACGAAGAAAAAAGTGGCACCAACACGTGCCCGAACCCAGCA
548 GATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCA
*
2939291 TGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
612 TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
2939349 CTAAGCCAAC
Statistics
Matches: 5292, Mismatches: 683, Indels: 225
0.85 0.11 0.04
Matches are distributed among these distances:
867 272 0.05
868 307 0.06
871 1 0.00
876 178 0.03
877 4 0.00
878 4 0.00
879 1 0.00
883 2 0.00
885 2 0.00
887 1 0.00
891 1 0.00
892 4 0.00
893 7 0.00
894 374 0.07
895 265 0.05
896 321 0.06
897 1 0.00
899 194 0.04
900 3 0.00
901 3 0.00
902 107 0.02
903 325 0.06
904 1222 0.23
905 283 0.05
907 117 0.02
908 2 0.00
910 2 0.00
911 1 0.00
912 1 0.00
913 2 0.00
915 1 0.00
920 1 0.00
921 2 0.00
922 1 0.00
923 2 0.00
924 148 0.03
925 415 0.08
926 10 0.00
927 5 0.00
928 3 0.00
929 207 0.04
934 1 0.00
936 1 0.00
937 2 0.00
939 1 0.00
942 1 0.00
944 26 0.00
945 458 0.09
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (904 bp):
CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCA
GTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACC
CCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCG
GCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
AGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCC
TCTACGTGCTACCGATCCTGCTGCCACAACCCTAGGTCCGGTCTGATCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGCCAACCGATGAAACGAACGGGCGATCGGGCGGGCGGGCACTACGC
Found at i:2936585 original size:26 final size:26
Alignment explanation
Indices: 2936549--2936601 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2936539 CTGGTCTGAT
*
2936549 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2936575 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2936601 C
1 C
2936602 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2937328 original size:903 final size:901
Alignment explanation
Indices: 2934785--2939348 Score: 5639
Period size: 945 Copynumber: 5.0 Consensus size: 901
2934775 CCGGTTCGAT
*
2934785 CTTAGACTGGGAATGAACTCCGTGTGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * **
2934850 CGGCCAGAGGGGCGGGAAGCGCAAGCCAAGGATCGGTTGGGTCCCCCTCTACGTGCTATTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
* * * * *
2934915 TGCTACTACAACCCTCAGTCCGGTCTGATCTTAGACTGAGAATGGACTCCGTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ***
2934980 CCG-ATGAAACGA--GTG-G-GCGGGCGGGCACTACGCCCACCAGAGAGACGGGATGCGCAAGCC
196 CCGAAAGAAACGAGCGGGCGAGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCC
** *
2935040 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGACATTT
261 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
2935105 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGACCAC
326 TTATGGCTTGTAAATTCATACAATGGTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* ** *
2935170 TGGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAAGGTTCGGGA-TTTTTAAAATTTTTTCGG
391 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGG
* * * * *
2935234 AAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTATATCTTTGTGGGCATGCGCAAAAAAA
456 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
2935299 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTA-
521 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AG
*
2935363 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTT
585 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
2935428 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
650 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * *
2935493 TGTGCGCACA-CCCCCTGACCCCTCCGATCGTCGGAACCCCAATGTCACCAGTCAGGTTCTCCGG
715 TGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCACCGGTCAGGTTCTCCGG
* * ** * * *
2935557 CGATGCTCCGACGATGTTGCCCCGGGGAAGAAAAATGCGGTACCAACACATGCCCGATCCCAGCA
780 CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * ** *
2935622 TATGCTACCGCAACCCACGGT-TCGATCCGATCTTAGACTGATAATTAACTCCGTATG
845 TGTGCTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
2935679 TTTAGACTAGGAGTGAACTCCGTATGCCTAAGTCAACACACGAAACGGGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
2935744 CGACAAGAGGGGCTGGATGCGCAAGCTGGGGATCGGTCGGCTCCCCCTCAATGTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
* * * ** * *
2935809 TACTGTCGCAACCCTCCATTCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ***
2935874 CCG-ATGAAACGAGC--G-GA-CGGGCGGGCACTACG-TCGACCAGAGAGACAAAATGCGCAAGC
196 CCGAAAGAAACGAGCGGGCGAGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGC
* * *
2935933 CGTGGATCGATAGGGTGGTAGGCGGGTTTAGGTAAATCTTCATATTTCTGCATGCCAATGCCATT
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * * *
2935998 CTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAGGACGA
325 TTTATGGCTTGTAAATTCATACAATGGTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
2936063 CTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTGGAGGTTCGGGATTTTTTAAAATTTTTTCG
390 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCG
* * * * * *
2936128 GATGGAATTCTGGCCCCAAACTTTGTACACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAA
455 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
2936193 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACTATTTGAAAAAAGTGTCCCCATTTCAG
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
2936258 ACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGAGTGTGAGTT
585 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
2936323 CTCAAGGTTTAATGAGGGATAGGGGGCTAATATAAGGGGCAAGTACCAGCACCCATCGCACATCA
650 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* *
2936388 TGTGCGCACACCCCCCCGGCACCCCCGATCGTCGAAACCCCAATGCCACCGGTCAGGTTCTCCGA
715 TGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCACCGGTCAGGTTCTCCGG
** * *
2936453 CGATGCTCCGGCGATGGCACCTCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCA
780 CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * *
2936518 TGTGCTGTCGTAACCCTCGGTCTGGTCTGATCTTATACTGGGAATGAACTCCGTATG
845 TGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* *
2936575 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
2936640 CAGCCAGAAGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCTCCCTCTGCGTGCTACCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
* *
2936705 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAA
131 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
2936770 CCGACAAAACGAACGAGCGGGCGAGCGGGTGGGCACTACGCTGGCCAGAGAGACAGGATGCGCAA
196 CCGA-AAGA--AACGAGCGGGCGAGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAA
* * *
2936835 GCCATGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCA
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
2936900 TTTTTATGGCTTGTAAATTCATACAATGGTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * ** *
2936965 GAATCATTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTTAAATTTTTT
388 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTT
* * *
2937030 TGGAAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTT-GCAAGCACAAAA
453 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
2937094 AAATTTACCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGATAAAAGTGTCCCCATTTC
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
2937159 AGACACTTTAACGGCTACTGGCGGCAAACCTATGAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
583 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
2937224 TTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
648 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * ** *
2937289 CATGGGCGCACACCCCCCCGGCCCCCCCGATTGTCGAAACCCCAATGCCGTCGGTCAGGTTGTCC
713 CATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCACCGGTCAGGTTCTCC
* * * * * *
2937354 GGTGATGCTTCAGCGATGGTGCCCCGACAAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAG
778 GGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * *
2937419 TATGTGCTACTGGAACCCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGA
843 CATGTGCTGCCGCAA-CC-C--TC-G----G----T---CT-GG--T---CT--G-AT-CTTAGA
*
2937484 TTGGGAATGAACTCCGTATG
882 CTGGGAATGAACTCCGTATG
* * ** *
2937504 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCATGAAATTAGCGTGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * * *
2937569 CGGCTAGAGGGGTGGGATGCACAAGTCGAGGATCAGTTGGGTCCCCTTCTACGTGTTACCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
* *
2937634 TGCTGCCATAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
2937699 CCG-ACGAAACGAGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGTGCAAGCC
196 CCGAAAGAAACGAGCGGGCGAGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCC
* ***
2937763 GTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTTTGTGCCAATGCCATTT
261 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
2937828 TTATGGCTTGTAAATTCA-ACAATGG-TCACTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGA
326 TTATGGCTTGTAAATTCATACAATGGTTC-CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * ** * *
2937891 CTCATTTTCTATTTTTCATGATTTTTGAAACTTTTCGCATTTCAGGATTTTTTAAAATTCTTTCA
390 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCG
* *
2937956 GAAAGAGCTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
455 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
2938021 ATTCAGCTAAAAAGTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAG
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
2938086 ACACTTTAATGGCTACTGGCAGCAAACGTGTAAAATCTCAAATGCTCTTTAAGGGGGGGTGAGTT
585 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * * *
2938151 CTTAAGGTTTGTTGAGGGATAGGGGGCCAATAGAATGGCCAAGTACCAGCACCCATCACACATCA
650 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * ** *
2938216 TGTGCACACACCCCCCCCGG-CCCCCTGATCACCGGAACCCCAATGCCACCGGTCAGGTTCTCCG
715 TGTGCGCACA-CCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCACCGGTCAGGTTCTCCG
* * * *
2938280 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGT
779 GCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* **** * * * * *
2938345 ATGTGCTGTCATGGCCCTTGAT-TCGATTTGATCTTAGACTGGGAATGAACTCTGTATG
844 ATGTGCTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
2938403 CTTAGGCTGGGAATGAACTCCGTATCCCTAAGTCAATCCACGAAACGAGAGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** ** ** * ***
2938468 CGGCCAGAGGGGCAGGACGTGTAAGATGGGGATCAATCGGGTCCCCCTCTGTGTCCTGTTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
* * * *
2938533 TGCTGCCACAACCCTTGATCCGGTCTGATCTTAGACTGGGAATAAACTCTGTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
2938598 CCAATGAAATGAGCGAGCGAGCGTGCGGGCAGGCGGGCATTACG-TCGGCCAGAAAGACGGGATG
196 CC---GAAA-GA---AACGAGCGGGCGAGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATG
* *
2938662 CGCAAGGCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
253 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
2938727 TGCCATTTTTATGGCTTGTAAAGTCATACAATTTATATTTATATCGATAGGGTGGTAGGTGGGTT
318 TGCCATTTTTATGGCTTGTAAA-T--T-C-----------ATA-C---A-------A--T-GG-T
* * * * * * *
2938792 TAGGCATAATGTAAGCCTTCACGTGAAGTTTCATTGCAAGATGACTTGTTTTATATTTTTTACGA
353 T---C---CT-TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
2938857 TTTTTGAAACTTTTTGCGGTTC-GGATTTTTTAAAATTTTTTTCGGAAGGAGTTTTGGCCCCAAA
411 TTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAA
* *
2938921 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATACAGCTAAAAACTCGAAG
475 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
2938986 TGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAAACACTTTAATGGCTACTGGC
540 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
2939051 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
605 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
*
2939116 AGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
670 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
** * **
2939181 CCCCCCGATCGTC-AGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCTAGCGATGGTG
735 CCCCCCGATCGTCGA-AACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTG
* * * * *
2939245 CCCCGACGAAGAAAAAAGTGGCACCAACACGTGCCCGAACCCAGCATGTGCTGCCGCAACCCTCG
799 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
** *
2939310 GTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
864 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
2939348 C
1 C
2939349 CTAAGCCAAC
Statistics
Matches: 3149, Mismatches: 424, Indels: 143
0.85 0.11 0.04
Matches are distributed among these distances:
894 377 0.12
895 265 0.08
896 314 0.10
897 1 0.00
898 2 0.00
899 184 0.06
900 9 0.00
901 1 0.00
902 2 0.00
903 316 0.10
904 258 0.08
905 2 0.00
906 1 0.00
907 123 0.04
908 4 0.00
910 1 0.00
911 1 0.00
912 2 0.00
916 1 0.00
919 2 0.00
920 3 0.00
921 1 0.00
922 2 0.00
923 4 0.00
924 146 0.05
925 427 0.14
926 9 0.00
927 4 0.00
928 2 0.00
929 198 0.06
934 1 0.00
936 1 0.00
937 2 0.00
939 1 0.00
942 1 0.00
944 24 0.01
945 457 0.15
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGAAAGAAACGAGCGGGCGAGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGC
GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:2937481 original size:26 final size:26
Alignment explanation
Indices: 2937452--2937530 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
2937442 CTGATCCGAT
*
2937452 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2937478 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2937504 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2937530 C
1 C
2937531 CTAAGTGAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2938135 original size:925 final size:911
Alignment explanation
Indices: 2934785--2939312 Score: 5377
Period size: 925 Copynumber: 4.9 Consensus size: 911
2934775 CCGGTTCGAT
*
2934785 CTTAGACTGGGAATGAACTCCGTGTGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * ***
2934850 CGGCCAGAGGGGCGGGAAGCGCAAGCCAAGGATCGGTTGGGTCCCCCTCTACGTGCTATTGATCC
66 CGGCCAGAGGGGCGGGATGCACAAGTCGGGGATCAGTCGGGTCCCCCTCTACGTGCTACCAATCC
* * * * *
2934915 TGCTACTACAACCCTC-AGTCCGGTCTGATCTTAGACTGAGAATGGACTCCGTATGCCTAAGCCA
131 TGCTGCCACAACCCTCGA-TCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** *
2934979 ACCGATGAAACGA----GTGGGCGGGCGGGCACTACGCCCACCAGAGAGACGGGATGCGCAAGCC
195 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCC
** *
2935040 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGACATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
2935105 TTATGGCTTGTAAATTCATACAATGG-TCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGACCA
325 TTATGGCTTGTAAATTCATACAATGGTTCACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
** * *
2935169 CTGGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-AAGGTTCGGGA-TTTTTAAAATTTTTTC
390 CTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCA-GTTCAGGATTTTTTAAAATTTTTTC
* * * * *
2935232 GGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTATATCTTTGTGGGCATGCGCAAAAA
454 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
2935297 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCT
519 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-
*
2935362 A-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAG
583 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
2935426 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
648 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
* * * * * *
2935491 CATGTGCGCACA-CCCCCTGACCCCTCCGATCGTCGGAACCCCAATGTCACCAGTCAGGTTCTCC
713 CATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCACCGGTCAGGTTCTCC
* * * ** * * * *
2935555 GGCGATGCTCCGACGATGTTGCCCCGGGGAAGAAAAATGCGGTACCAACACATGCCCGATCCCAG
778 GACGATGCTCAG-CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
* * * * * ** *
2935620 CATATGCTACCGCAA-CC-C--AC-G--GT-T--C-GATCCG-ATCTTAGACTGATAATTAACTC
842 CATGTGCT-CTGGAACCCTCGGTCTGATGTCTGACTGATCTGTATCTTAGACTGGGAATGAACTC
2935673 CGTATG
906 CGTATG
* * * * * *
2935679 TTTAGACTAGGAGTGAACTCCGTATGCCTAAGTCAACACACGAAACGGGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
2935744 CGACAAGAGGGGCTGGATGCGCAAG-CTGGGGATCGGTCGGCTCCCCCTCAATGTGCTGCCAATC
66 CGGCCAGAGGGGCGGGATGCACAAGTC-GGGGATCAGTCGGGTCCCCCTCTACGTGCTACCAATC
* * * * *
2935808 CTACTGTCGCAACCCTCCATTCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * **
2935873 ACCGATGAAACGA----GCGGACGGGCGGGCACTACGTCGACCAGAGAGACAAAATGCGCAAGCC
195 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCC
* * * *
2935934 GTGGATCGATAGGGTGGTAGGCGGGTTTAGGTAAATCTTCATATTTCTGCATGCCAATGCCATTC
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
2935999 TTATGGCTTGTAAATTCATACAATGG-TCCCTTAAGCCTTCACGTGAAGTTTCATGGGAGGACGA
325 TTATGGCTTGTAAATTCATACAATGGTTCACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
2936063 CTCGTTTTTTATTTTTCATGATTTTTGAAAC-TTTTGGAGGTTCGGGATTTTTTAAAATTTTTTC
390 CTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCA-GTTCAGGATTTTTTAAAATTTTTTC
* * * * * *
2936127 GGATGGAATTCTGGCCCCAAACTTTGTACACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAA
454 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
2936192 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACTATTTGAAAAAAGTGTCCCCATTTCA
519 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
2936257 GACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGAGTGTGAGT
584 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * *
2936322 TCTCAAGGTTTAATGAGGGATAGGGGGCTAATATAAGGGGCAAGTACCAGCACCCATCGCACATC
649 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
*
2936387 ATGTGCGCACACCCCCCCGGCACCCCCGATCGTCGAAACCCCAATGCCACCGGTCAGGTTCTCCG
714 ATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCACCGGTCAGGTTCTCCG
* ** * * *
2936452 ACGATGCTCCGGCGATGGCACCTCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGC
779 ACGATGCT-CAGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
* *
2936517 ATGTGCTGTCGTAACCCTCGGTCTG--G--T--CTGATCT-TA---T--ACTGGGAATGAACTCC
843 ATGTGCTCT-GGAACCCTCGGTCTGATGTCTGACTGATCTGTATCTTAGACTGGGAATGAACTCC
2936570 GTATG
907 GTATG
* *
2936575 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
2936640 CAGCCAGAAGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCTCCCTCTGCGTGCTACCAATCC
66 CGGCCAGAGGGGCGGGATGCACAAGTCGGGGATCAGTCGGGTCCCCCTCTACGTGCTACCAATCC
* ** *
2936705 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAA
131 TGCTGCCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
2936770 CCGACAAAACGAACGAGCGGGCGAGCGGGTGGGCACTACGCTGGCCAGAGAGACAGGATGCGCAA
196 CCGAC--GA--AACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAA
* * *
2936835 GCCATGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
2936900 TTTTTATGGCTTGTAAATTCATACAATGGTTC-CTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
322 TTTTTATGGCTTGTAAATTCATACAATGGTTCACTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** * *
2936964 CGAATCATTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTTAAATTTTT
387 CGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCAGGATTTTTTAAAATTTTT
* * *
2937029 TTGGAAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTT-GCAAGCACAAA
452 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
2937093 AAAATTTACCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGATAAAAGTGTCCCCATTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
2937158 CAGACACTTTAACGGCTACTGGCGGCAAACCTATGAAATCTCAAATGCTCTTTAAGGGGGTGTGA
582 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
2937223 GTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
647 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
* * ** *
2937288 TCATGGGCGCACACCCCCCCGGCCCCCCCGATTGTCGAAACCCCAATGCCGTCGGTCAGGTTGTC
712 TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCACCGGTCAGGTTCTC
** * *
2937353 CGGTGATGCTTCAGCGATGGTGCCCCGACAAAGAAAAATACGGCACCAGCACATGCCTGAGCCCA
777 CGACGATGC-TCAGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
*
2937418 GTATGTGCTACTGGAACCCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAG
841 GCATGTGCT-CTGGAACCCTCGGTCTGAT--G-TC-T-GACT--G-AT---CT--GTAT-CTTAG
*
2937483 ATTGGGAATGAACTCCGTATG
891 ACTGGGAATGAACTCCGTATG
* * ** *
2937504 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCATGAAATTAGCGTGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
2937569 CGGCTAGAGGGGTGGGATGCACAAGTCGAGGATCAGTTGGGTCCCCTTCTACGTGTTACCGATCT
66 CGGCCAGAGGGGCGGGATGCACAAGTCGGGGATCAGTCGGGTCCCCCTCTACGTGCTACCAATCC
* *
2937634 TGCTGCCATAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
2937699 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGTGCAAGCCG
196 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCG
* ***
2937764 TGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTTTGTGCCAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
*
2937829 TATGGCTTGTAAATTCA-ACAATGG-TCACTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGAC
326 TATGGCTTGTAAATTCATACAATGGTTCACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
2937892 TCATTTTCTATTTTTCATGATTTTTGAAACTTTTCGCATTTCAGGATTTTTTAAAATTCTTTCAG
391 TCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCAGGATTTTTTAAAATTTTTTCGG
* *
2937957 AAAGAGCTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
456 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
2938022 TTCAGCTAAAAAGTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGA
521 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
2938087 CACTTTAATGGCTACTGGCAGCAAACGTGTAAAATCTCAAATGCTCTTTAAGGGGGGGTGAGTTC
586 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * *
2938152 TTAAGGTTTGTTGAGGGATAGGGGGCCAATAGAATGGCCAAGTACCAGCACCCATCACACATCAT
651 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
* * ** *
2938217 GTGCACACACCCCCCCCGG-CCCCCTGATCACCGGAACCCCAATGCCACCGGTCAGGTTCTCCGA
716 GTGCGCACA-CCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCACCGGTCAGGTTCTCCGA
* * * *
2938281 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGTA
780 CGATGCTCAG-CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
2938346 TGTGCTGTCATGG---CC-C--T-TGAT-TC-GA-T--T-TG-ATCTTAGACTGGGAATGAACTC
844 TGTGC--TC-TGGAACCCTCGGTCTGATGTCTGACTGATCTGTATCTTAGACTGGGAATGAACTC
*
2938397 TGTATG
906 CGTATG
* * * * *
2938403 CTTAGGCTGGGAATGAACTCCGTATCCCTAAGTCAATCCACGAAACGAGAGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *** * ** * ****
2938468 CGGCCAGAGGGGCAGGACGTGTAAGAT-GGGGATCAATCGGGTCCCCCTCTGTGTCCTGTTGATC
66 CGGCCAGAGGGGCGGGATGCACAAG-TCGGGGATCAGTCGGGTCCCCCTCTACGTGCTACCAATC
* * * *
2938532 CTGCTGCCACAACCCTTGATCCGGTCTGATCTTAGACTGGGAATAAACTCTGTATGCCTAAGCCA
130 CTGCTGCCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
2938597 ACCAATGAAATGAGCGAGCGAGCGTGCGGGCAGGCGGGCATTACGTCGGCCAGAAAGACGGGATG
195 ACCGACG-AA--A-CGAGC--G-G-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATG
* *
2938662 CGCAAGGCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
252 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
2938727 TGCCATTTTTATGGCTTGTAAAGTCATACAATTTATATTTATATCGATAGGGTGGTAGGTGGGTT
317 TGCCATTTTTATGGCTTGTAAA-T--T-C-----------ATA-C---A-------A--T-GG-T
* * * ** * * *
2938792 TAGGCATAATGTAAGCCTTCACGTGAAGTTTCATTGCAAGATGACTTGTTTTATATTTTTTACGA
352 T---C--ACT-TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGA
*
2938857 TTTTTGAAACTTTTTGCGGTTC-GGATTTTTTAAAATTTTTTTCGGAAGGAGTTTTGGCCCCAAA
411 TTTTTGAAACTTTTTGCAGTTCAGGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAA
* *
2938921 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATACAGCTAAAAACTCGAAG
475 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
2938986 TGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAAACACTTTAATGGCTACTGGC
540 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
2939051 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
605 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
* *
2939116 AGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
670 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGC
** **
2939181 CCCCCCGATCGTC-AGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCTAGCGATGGTG
735 CCCCCCGATCGTCGA-AACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTC-AGCGATGGTG
* * * * * *
2939245 CCCCGACGAAGAAAAA-AGTGGCACCAACACGTGCCCGAACCCAGCATGTGCTGCCGCAACCCTC
798 CCCCGACGAAGAAAAATA-CGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-CTGGAACCCTC
2939309 GGTC
861 GGTC
2939313 CAGTCCGATC
Statistics
Matches: 3126, Mismatches: 387, Indels: 186
0.85 0.10 0.05
Matches are distributed among these distances:
893 5 0.00
894 374 0.12
895 266 0.09
896 293 0.09
897 5 0.00
898 3 0.00
899 186 0.06
900 13 0.00
901 8 0.00
902 1 0.00
903 328 0.10
904 251 0.08
905 8 0.00
906 1 0.00
907 117 0.04
908 1 0.00
910 1 0.00
911 2 0.00
912 1 0.00
913 2 0.00
914 2 0.00
916 3 0.00
917 2 0.00
920 6 0.00
921 1 0.00
922 1 0.00
923 6 0.00
924 149 0.05
925 422 0.13
926 10 0.00
927 7 0.00
929 196 0.06
934 1 0.00
936 1 0.00
937 2 0.00
939 1 0.00
942 1 0.00
943 2 0.00
944 25 0.01
945 417 0.13
946 3 0.00
947 1 0.00
949 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (911 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCACAAGTCGGGGATCAGTCGGGTCCCCCTCTACGTGCTACCAATCC
TGCTGCCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTTCACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCAGGATTTTTTAAAATTTTTTCGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
GTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCACCGGTCAGGTTCTCCGAC
GATGCTCAGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
TGCTCTGGAACCCTCGGTCTGATGTCTGACTGATCTGTATCTTAGACTGGGAATGAACTCCGTAT
G
Found at i:2938413 original size:26 final size:26
Alignment explanation
Indices: 2938377--2938427 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2938367 TCGATTTGAT
*
2938377 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2938403 CTTAGGCTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
2938428 CCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2941646 original size:26 final size:26
Alignment explanation
Indices: 2941610--2941662 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2941600 CCGGTCCGAT
*
2941610 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
*
2941636 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
2941662 C
1 C
2941663 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:2942520 original size:26 final size:26
Alignment explanation
Indices: 2942484--2942536 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2942474 CCAGTTCGAT
*
2942484 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2942510 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2942536 C
1 C
2942537 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2942759 original size:173 final size:174
Alignment explanation
Indices: 2942482--2942816 Score: 467
Period size: 173 Copynumber: 1.9 Consensus size: 174
2942472 GTCCAGTTCG
*
2942482 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAC
* * ** **
2942547 CCACGAAAGGAGCATGCGGGCGCTCAACCGGCCAGAGGGGTGGGATGCCCAAGCCGGGGATCGGT
66 CCACGAAACGAGCATGCGGGCGCTCAACCGACCAGAGGGGCAGGATGCCCAAGCCGGGGATCGAC
* *
2942612 CGGGTCCCCCACTGCGTGCTGTCGATCCTGCTCGGTCTGGTCCA
131 CGGGTCCCCCACTGCGTGCTGCCAATCCTGCTCGGTCTGGTCCA
* *
2942656 ATCTTAGACTGGGAATGAACTGC-GTATGCTT-GACTATGAATGTACTCCGTATGCCTAAGTCAA
1 ATCTTAGACTGGGAATGAACT-CTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA
* * * * ** *
2942719 CCCACGAAACGAGCGTGCGGGCGTTCAGCCGACTAGAGGGGCAGGATGCGTATGCCGGGGATCGA
65 CCCACGAAACGAGCATGCGGGCGCTCAACCGACCAGAGGGGCAGGATGCCCAAGCCGGGGATCGA
* *
2942784 CCGGGTCCCCCTCTGCGTGGTGCCAATCCTGCT
130 CCGGGTCCCCCACTGCGTGCTGCCAATCCTGCT
2942817 ACCGTAACCC
Statistics
Matches: 140, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
173 110 0.79
174 29 0.21
175 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.31, T:0.21
Consensus pattern (174 bp):
ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCATGCGGGCGCTCAACCGACCAGAGGGGCAGGATGCCCAAGCCGGGGATCGAC
CGGGTCCCCCACTGCGTGCTGCCAATCCTGCTCGGTCTGGTCCA
Found at i:2943593 original size:26 final size:26
Alignment explanation
Indices: 2943564--2943616 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2943554 CCAGTCTGAT
*
2943564 CTTAGA-CTGGGAATGAACTCTGTATG
1 CTTAGATC-GGGAATGAACTCCGTATG
2943590 CTTAGATCGGGAATGAACTCCGTATG
1 CTTAGATCGGGAATGAACTCCGTATG
2943616 C
1 C
2943617 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGATCGGGAATGAACTCCGTATG
Done.