Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 21 of 129
Found at i:2944570 original size:26 final size:26
Alignment explanation
Indices: 2944534--2944589 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
2944524 CCAATCCGAT
* *
2944534 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATC
2944560 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
2944586 CTTA
1 CTTA
2944590 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:2947713 original size:26 final size:26
Alignment explanation
Indices: 2947684--2947734 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2947674 TCGGTTTGAT
*
2947684 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2947710 CTTAGATTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
2947735 CCCTCAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2948632 original size:27 final size:26
Alignment explanation
Indices: 2948594--2948644 Score: 84
Period size: 27 Copynumber: 1.9 Consensus size: 26
2948584 CTAGTCTGAT
2948594 CTTAGACTGGGAATGAAACTCCGTAGG
1 CTTAGACTGGGAATG-AACTCCGTAGG
*
2948621 CTTAGTCTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
2948645 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 9 0.39
27 14 0.61
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAGG
Found at i:2948654 original size:27 final size:27
Alignment explanation
Indices: 2948600--2948654 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
2948590 TGATCTTAGA
* *
2948600 CTGGGAATGAAACTCCGTAGGCTTAGT
1 CTGGGAATGAAACTCCGTAGCCTAAGT
2948627 CTGGGAATG-AACTCCGTATGCCTAAGT
1 CTGGGAATGAAACTCCGTA-GCCTAAGT
2948654 C
1 C
2948655 AACCCACGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 9 0.36
27 16 0.64
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (27 bp):
CTGGGAATGAAACTCCGTAGCCTAAGT
Found at i:2949527 original size:26 final size:26
Alignment explanation
Indices: 2949491--2949543 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2949481 CCAGTCTGAT
2949491 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
2949517 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2949543 C
1 C
2949544 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2949788 original size:894 final size:897
Alignment explanation
Indices: 2946070--2951084 Score: 5666
Period size: 852 Copynumber: 5.7 Consensus size: 897
2946060 GCCCAGCATG
* * *
2946070 TGCTACCGCAACCCTCGGTCTAGTCCGATCTTAGACTGAGAAATGAACTCCGTATGCCTAAGCCA
1 TGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCA
* * * ** * *
2946135 A-C--TG--ACGAA---ACGAGCGGGCGGGCACTACACCGTCCAGAGAGACGGGATGCGTAAGCC
65 ACCGATGAAATGAACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* *
2946192 GTGGATCGATAAGGTGGTAGGTGTGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
* * *
2946257 TTATGGCTTGTAAATTCATACAAAGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGGCGAC
195 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
2946322 TCGTTTTCTATTTTTCACAAATTTTGAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTCAG
260 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTAAAATTTTTTCGG
*
2946387 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTGTTTGGCATGCACAAAACA
324 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG-TTGGCATGCACAAAA-A
* *
2946452 AA-TCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
387 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
** * *
2946516 AACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAAGGGTTTAAGT
452 AACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
2946581 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAACACCCATTGCACATC
517 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATC
* * * ** *
2946646 ATTTGCGCACACCCCCTCCGGCCCCTCGATCACCGGAACACCAATGCCGCCGGTCTGGTTCTCTG
582 ATGTGCGCACACCCCCT-CGGCCCC-CGATCGCCGGAACACCAATGCCGCCAGTCAAGTTCTCCG
** * * * *
2946711 GTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATGGTACCAGCACAAGCCCGAGCCCAGC
645 ACGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATACGGCACCAGCACAAGCCTGAGCCCAGC
* * *
2946776 ATGTGCTGCCGTAA-CC-C--T-CA----G--C-----CT--G---G---TCCG-AT-CTTAGAC
710 ATATGCTGCCGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAT
* * ** ** * *
2946815 TGGGAATGAACTCCGTATGCCTAAGTCAACACATGAAACAAGCGCACGGACGCTCAGCAGGCCAG
775 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * *
2946880 AAGGGCCGGATGCGCAAGCCGGGGATCGATCGGGTCCTCC-TCTGCGTG-TGGCCGATCC
840 AGGGGCTGGATGCGCAAGCTGGGGATCGATCGGGTCC-CCTTCTGCGTGCT-GTCGATCC
* * ** * **
2946938 TACTGCTACCACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
2947003 CCGATGAAA-CAAGCGAGCGAGCGGGCAGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
66 CCGATGAAATGAA-C--G-G-GCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * * *
2947067 AGCCGTCGATCGATAGGGTGGTAGGTGGCTTTAGGCACATATTCATATTTCTACGTGCCAATGCC
126 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* *
2947132 ATTTTTATGGCTTGTAAATTCATACAATGGT-CCTCTAAGCCTTCATGTGAAGTTTCATGGGAAG
191 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCT-TAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * * ** * *
2947196 ATGACTCGTTTTTTATTTTTCATGATTTTTGAAACTCTTTGCGGTTCAAGATTTTTTAAACTTTT
255 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTAAAATTTTT
* * *
2947261 TCGGAAGGGGTTTTGCCCCCAAACTTGGTAGACGTGAACCTTGTATTTTTGTTGGCATGCA-AAA
320 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
2947325 AGAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
385 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
2947390 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTTA
450 CAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
2947455 GTTCTTGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
515 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACA
* *
2947520 TCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGTCGGAAC-CCTAATGCCGCCAATCAAGTTC
580 TCATGTGCGCACA-CCCCCTCGG--CCCCCGATCGCCGGAACACC-AATGCCGCCAGTCAAGTTC
* * * ** * * *
2947584 TCCGACGATGCTCTGGCGATGGTGCCCTAGGGAAGAAAAATGCGGCACCAGCACATGCC-AAGCC
641 TCCGACGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATACGGCACCAGCACAAGCCTGAGCC
* * * * * *
2947648 CAGCATGTGCTGCCGCAACCCTCGGTTCGGTTTGATCTTAGACTGGGAATGAACTTCGTATGCTT
706 CAGCATATGCTGCCGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * ***
2947713 AGATTGGGAATGAACTCCGTATCCCTCAGTCAACCCACGAAATGAGCGCGTGGGCGCTCAGGTAG
771 AGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGG
* * * * *
2947778 CAAGAGGGGCAGGATACGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGTTGTCGATCC
836 CCAGAGGGGCTGGATGCGCAAGCTGGGGATCGATCGGGTCCCCTTCTGCGTGCTGTCGATCC
* * * * * * **
2947840 TACTGCTGCCACCTTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
2947905 CCAATGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCCG
66 CCGATGAAATGAACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
2947970 TGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGACATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
*
2948035 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG-AAAGTTTCATGGCAAGACGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * *
2948099 CGTTTTCTATTTTTCATGA-TTTTCAAA------A-----C-----TTTTAAAATTGTTTCGAAA
261 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTAAAATTTTTTCGGAA
* * * *
2948147 AGAGTTTTAGCCCCAAACTTGGTAGATGTGATCCTTCTA-TTTTGCTTGGCATGGCCCACAAAAA
326 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG-TTGGCAT-G--CACAAAAA
*
2948211 AATAT-AGCT-AAAACTCGAAGTGCTACAAGATTGTTGTGACCATTTCGAAAAAAGTGTCCCCAT
387 AAT-TCAGCTAAAAACTCAAAGTG-TACAAGATT-TTGTGACCATTT-GAAAAAAGTGTCCCCAT
* * *
2948274 TTCAGGACCACTTTATATGGCTACTAGTAGCAAACCTGTAAAGATCTCAAATGCTCTTTAA-GGG
448 TTCA--AACACTTTA-ATGGCTACTGGCAGCAAACCTGTAAA-ATCTCAAATGCTCTTTAAGGGG
* * * *
2948338 GTGTGAGTTTCTCGAGCGTTTGAATCAGGGCTA-GGGGCCAACATAAGGGCGAAGCTACCCAAAC
509 GTGTGAG-TTCTCGAG-GTTTG-ATGAGGGATAGGGGGCCAATATAAGGGCCAAG-TA-CC-AAC
* * * *
2948402 ACCCAAACACACATCATTTGCGCACACCCCCTCGCGGCCCCCCCGATCGTCGGAACACCAATGCC
568 ACCC-ATCGCACATCATGTGCGCACACCCCCT--CGG--CCCCCGATCGCCGGAACACCAATGCC
* ** **
2948467 GTCAGTCAAGGTTCTTTGGTGATGCTCCGACGATTGGTGCCGCCAATCGAAAAGGAAAAAGTACT
628 GCCAGTCAA-GTTCTCCGACGATGCTCCGACGA-TGGTGCC-CCAA-CG--AA-GAAAAA-TAC-
* *
2948532 GGCACCAGCCACAAG-CTCGAAGCCCAGCATGTTGCTTTCCGCAACCCTCAG-CCTAGTCTGATC
684 GGCACCAG-CACAAGCCT-G-AGCCCAGCAT-ATGC-TGCCGCAACCCTCAGTCC-AGTCTGATC
*
2948595 TTAGACTGGGAATGAAACTCCGTAGGCTTAG-TCTGGGAATGAACTCCGTATGCCTAAGTCAACC
743 TTAGACTGGGAATG-AACTCCGTATGCTTAGAT-TGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * *
2948659 CACGAAATGAGCATGCGGGCGCTCAGCCAGCCAGAGGGG-TGGGATGCGTAAG-TCGAGGATCGA
806 CACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCT-GGATGCGCAAGCT-GGGGATCGA
*
2948722 TCGGGTCCCCCTT-TACGTGCTGTCGATCC
869 TCGGGT-CCCCTTCTGCGTGCTGTCGATCC
* * * * *
2948751 TGCTACCGTAACCCTCAGTCTGATCCAATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCTAA
1 TGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
2948816 TCGACGAAATGAGCGGGCGGGCGGGCTGGCACTACGTCGGCCAGATAGACGGGATGCGCAAGCCA
66 CCGATGAAATGAACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* * ***
2948881 TGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATTTTTCTGTGTGCCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
* * * *
2948946 TATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGATGACA
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
** *
2949011 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGCTT-GGGATTTTTCAAAATTTTTTTGG
261 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG-TTCGGGATTTTT-AAAATTTTTTCGG
*
2949075 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAG
324 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
2949139 TT-AGGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
389 TTCA-GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
*
2949203 ACACTTTAATGGTTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
453 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
2949268 CTCTAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
518 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCA
* * * * * * *
2949333 TGTGCGCGCACCTCCT-GGCCCCCTATCGCCAGAACCCCAATGCCGCCGGTCAAATTCTCCGACG
583 TGTGCGCACACCCCCTCGGCCCCCGATCGCCGGAACACCAATGCCGCCAGTCAAGTTCTCCGACG
* * * *
2949397 GTGCTCCGATGATGGTGCCCCAACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCTAGCATA
648 ATGCTCCGACGATGGTGCCCCAACGAAGAAAAATACGGCACCAGCACAAGCCTGAGCCCAGCATA
* *
2949462 TGCTACTGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGG
713 TGCTGCCGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGG
* * * * * *
2949527 GAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGTGCTCAACCGGCAAGAGG
778 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * * *
2949592 GGCTGGATGCGCAAGCTGAGGATCG-GC-CGACCCATTCTGTGTGCTGTCGATCA
843 GGCTGGATGCGCAAGCTGGGGATCGATCGGGTCCCCTTCTGCGTGCTGTCGATCC
* *
2949645 TGCTACCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
2949710 CCGATGAAATGAACGGGTGGGCGGGCGGGCACTTCGTCGGCCAGAGAGACGGGATGCGCAAGTCG
66 CCGATGAAATGAACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
2949775 TGGATCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTGCATGCCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
* *
2949840 TATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGACGATT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
**
2949905 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTTGGATTTTTTAAAATTTTTTCGGA
261 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTAAAATTTTTTCGGA
* * * * **
2949970 AGGCA-TTTTGGACCCAAACTTGGTAGACGTGATCCCTCTATTTTTTTTGGTGTGCACAAAAAAA
325 AGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
2950034 TTCAGCTAAAAACT-AGAAGTGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTCAG
389 TTCAGCTAAAAACTCA-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
* * *
2950098 ACACTTTAATGGCTATTGGCAGCAAACCTGTAACATCTCAAATACTCTTTAAGGGGGTGTGAGTT
453 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
2950163 CTTGAGGATTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGGACATCA
518 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCA
* * *
2950228 TGTACGCACACCGCCCTCGG-CCCC---C-CC--AATCACTGAA--AC-CCA---AA----T--G
583 TGTGCGCACACC-CCCTCGGCCCCCGATCGCCGGAA-CAC-CAATGCCGCCAGTCAAGTTCTCCG
* * *
2950274 CCG-T--T-CGACGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACAAG-CTCGAGCCCAG
645 ACGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATACGGCACCAGCACAAGCCT-GAGCCCAG
* * * * **
2950334 CATGTGCTGCCACAACCCTCGGTCCATTCTGATCTTAGACTGGGAATGAACTCCGTATGCCCA-A
709 CATATGCTGCCGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * *
2950398 GTT---AA-G-----CG-A---C---G-------A--AAA-GAACGTGCGGGTGCTCAGTCGGCC
774 -TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCC
* * *
2950437 AGAGGGGCGGGATGCACAAGCCGGGGATCGA-CGGGGTCCCCTTCTGCGTGCTGTCGATCC
838 AGAGGGGCTGGATGCGCAAGCTGGGGATCGATC-GGGTCCCCTTCTGCGTGCTGTCGATCC
* * * * * *
2950497 TACTGCCGCATCCCTTGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * *
2950562 CCGATGAAATGAGCGGGTAGGCGGGCGGGCACTTCGTCGGCTAGAGAGGCGGGATGCGCAAGCCG
66 CCGATGAAATGAACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
2950627 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
2950692 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * ** *
2950757 CATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTCTTAAAATTTTTTCAGA
261 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTT-TTAAAATTTTTTCGGA
** * * *
2950822 ACTAGTTTTGGGCCCAAACTAGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
325 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * **
2950887 TCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGCCCCCATTTCGGAC
390 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAC
** ** * *
2950952 ACTTTAATAACTACCAGCAGCAAAACTGTAAAATCTCAGATGCTCTTTAAGGGGGTGTGAGTTCT
455 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*** * * * *
2951017 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAAAACCATGTACCAGCACCCATTGCACATTATG
520 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATG
2951082 TGC
585 TGC
2951085 AAGCCAGGGA
Statistics
Matches: 3588, Mismatches: 417, Indels: 300
0.83 0.10 0.07
Matches are distributed among these distances:
850 46 0.01
851 7 0.00
852 545 0.15
853 2 0.00
860 1 0.00
863 1 0.00
866 1 0.00
867 27 0.01
868 32 0.01
870 2 0.00
871 2 0.00
872 2 0.00
873 2 0.00
875 5 0.00
876 324 0.09
877 91 0.03
878 66 0.02
879 200 0.06
880 58 0.02
881 2 0.00
882 1 0.00
883 15 0.00
884 20 0.01
885 15 0.00
886 23 0.01
887 1 0.00
888 7 0.00
889 34 0.01
890 28 0.01
891 25 0.01
892 16 0.00
893 10 0.00
894 364 0.10
895 217 0.06
896 145 0.04
897 98 0.03
898 154 0.04
899 15 0.00
900 11 0.00
901 14 0.00
902 182 0.05
903 14 0.00
904 4 0.00
905 9 0.00
906 7 0.00
907 4 0.00
908 17 0.00
909 20 0.01
910 65 0.02
911 324 0.09
912 45 0.01
913 7 0.00
915 22 0.01
916 6 0.00
917 2 0.00
918 10 0.00
919 24 0.01
920 25 0.01
921 33 0.01
922 8 0.00
924 21 0.01
925 14 0.00
926 17 0.00
927 15 0.00
929 5 0.00
930 54 0.02
931 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
TGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGATGAAATGAACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTAAAATTTTTTCGGAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGT
GCGCACACCCCCTCGGCCCCCGATCGCCGGAACACCAATGCCGCCAGTCAAGTTCTCCGACGATG
CTCCGACGATGGTGCCCCAACGAAGAAAAATACGGCACCAGCACAAGCCTGAGCCCAGCATATGC
TGCCGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAA
TGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
TGGATGCGCAAGCTGGGGATCGATCGGGTCCCCTTCTGCGTGCTGTCGATCC
Found at i:2954069 original size:26 final size:26
Alignment explanation
Indices: 2954033--2954085 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2954023 CTGGGCTTAG
*
2954033 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2954059 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2954085 G
1 G
2954086 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2954973 original size:26 final size:26
Alignment explanation
Indices: 2954943--2954999 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
2954933 ATGGGTTGAC
*
2954943 TTAAGCATACGGAGTTCATTCCCAGT
1 TTAAGCATACAGAGTTCATTCCCAGT
2954969 TTAAGCATACAGAGTTCATTCCCAGT
1 TTAAGCATACAGAGTTCATTCCCAGT
*
2954995 CTAAG
1 TTAAG
2955000 ATCGGACCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.30
Consensus pattern (26 bp):
TTAAGCATACAGAGTTCATTCCCAGT
Found at i:2956770 original size:26 final size:26
Alignment explanation
Indices: 2956734--2956786 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2956724 GTTGACGTTG
2956734 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
* *
2956760 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
2956786 G
1 G
2956787 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:2957302 original size:26 final size:26
Alignment explanation
Indices: 2957208--2957295 Score: 106
Period size: 26 Copynumber: 3.3 Consensus size: 26
2957198 ACTCCTTCCG
* * * * *
2957208 AAAAAATTTTAAAAATCTCAAACTGC
1 AAAAAGTTTCAAAAATTTCGAACTGT
2957234 AAAAAGTTTCAAAAATTGAT-GAACTGT
1 AAAAAGTTTCAAAAATT--TCGAACTGT
2957261 AAAAAGTTTCAAAAATTTCGAACTGT
1 AAAAAGTTTCAAAAATTTCGAACTGT
2957287 AAAAAGTTT
1 AAAAAGTTT
2957296 TTAAAATCGT
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
25 1 0.02
26 30 0.56
27 22 0.41
28 1 0.02
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.30
Consensus pattern (26 bp):
AAAAAGTTTCAAAAATTTCGAACTGT
Found at i:2958196 original size:950 final size:950
Alignment explanation
Indices: 2956350--2958199 Score: 2727
Period size: 950 Copynumber: 1.9 Consensus size: 950
2956340 TTCAAAATTC
* * *
2956350 CGTGAAAAATAGAAACGACTGGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
1 CGTGAAAAATAAAAACGACTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
* * * *
2956415 TGAATTTACTAGCCATAAAAATGGCATTGGCACGTAGAAATATGAATATGTCCCTAAACCCACCT
66 TAAATCTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTCCCTAAACCCACCT
* ** *
2956480 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCG
131 ACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTCACCGACCTAGT---CGCCCGTCCG
* * ** *
2956545 TCCACCCGCTCGTTTTGTCGGTTGGCTTACGCATACAGAGTTCATTCCCAGTCTAAGATCAGACT
193 CCCACCCGCTCGTCTCATCGGTTGGCTTACGCATACAGAGCTCATTCCCAGTCTAAGATCAGACT
* * * *
2956610 GGATTGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAAGGGGACCTGGCCGATCCCTGGCTTG
258 GGATTGAGGGTTGCAGAAGCAGGATCGACAGCACACAGAAGGGGACCCGGCCGATCCCTGGCTTG
* **
2956675 CGCATCTCGCCCCTCTGGCCTACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACGTTGGCATAC
323 CGCATCTCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACGTTGGCATAC
**
2956740 GGAGTTCATTCCCAGCCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGG
388 GGAGTTCATTCCCAGCCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGG
* *
2956805 TTGCGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGTCACCAT
453 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGTCACCAT
*
2956870 CGCTGGAGCATCACCGGAAAACCCAACCAGCGGCATTGGGGTTCAGGCGATCGGGGGGCCGGGGG
518 CGCTGAAGCATCACCGGAAAACCCAACCAGCGGCATTGGGGTTCAGGCGATCGGGGGGCCGGGGG
* *
2956935 CGTGTGTGCACATGATGTGCGATGGGGGCTGGTACTTGGCCCTTATGTTGGCCCCTATCCCTCAT
583 CGTGTGCGCACATGATGTGCGATGGGGGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCAT
2957000 CAAACCTCGAGAACTCAAACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
648 CAAACCTCGAGAACTCAAACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
2957065 CATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTT
713 AATTAAAGTGTCTAAAATGAGGACACATTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTT
* * *
2957130 TTTAGCTGATTTTTTTTGTGCATCCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCT
778 TTTAGCTGAATTTTTTTGTGCATCCCAACAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCT
2957195 AAAACTCCTTCCGAAAAAATTTTAAAAATCTCAAACTGCAAAAAGTTTCAAAAATTGATGAACTG
843 AAAACTCCTTCCGAAAAAATTTTAAAAATCTCAAACTGCAAAAAGTTTCAAAAATTGATGAACTG
2957260 TAAAAAGTTTCAAAAATTTCGAACTGTAAAAAGTTTTTAAAAT
908 TAAAAAGTTTCAAAAATTTCGAACTGTAAAAAGTTTTTAAAAT
* * *
2957303 CGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGGATGCTTAAGGGACCATTGT
1 CGTGAAAAAT-AAAAACGACTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
* *
2957368 ATAAATCTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACC
65 ATAAATCTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTCCCTAAACCCACC
* *
2957433 TACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTCACTGGCCTAGT-GCCCGTCCGCC
130 TACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTCACCGACCTAGTCGCCCGTCCGCC
* * * * *
2957497 CACCCGTTCGTCTCATCGGTTGGCTTAGGCATACGGAGCTCATTCCCAGTCTAAGATCGGATTGG
195 CACCCGCTCGTCTCATCGGTTGGCTTACGCATACAGAGCTCATTCCCAGTCTAAGATCAGACTGG
* * * * **
2957562 ATTGAGGGTTGTAGAAGTAGGATCGACAGCACGCAGAGGGGGACCCGGTTGATCCCCT-GCTTGC
260 ATTGAGGGTTGCAGAAGCAGGATCGACAGCACACAGAAGGGGACCCGGCCGAT-CCCTGGCTTGC
* * *
2957626 GCATC-CTGCCCCTCTGGTCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGAC-TTAGGCAT-
324 GCATCTC-GCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACGTT-GGCATA
* * *
2957688 CGGAGTTCATTCCGAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGG
387 CGGAGTTCATTCCCAGCCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGG
* * *
2957753 GTTGTGGCAGCACATGCTGGGCCTCGTGCATGTGCTGGTGTCACATTTTTCTTCGCCGGG-CACC
452 GTTGCGGCAGCACATGCTGGG-CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGTCACC
* * * * * * * *
2957817 ATC-ATCGAAGCATCACCGGAGAACCTGAA-CGGCGGCATTTGGGTTCCGGTGATCGGGGGGTCG
516 ATCGCT-GAAGCATCACCGGAAAACC-CAACCAGCGGCATTGGGGTTCAGGCGATCGGGGGGCCG
*
2957880 GAGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
579 G-GGGCGTGTGCGCACATGATGTGCGATGGGGGCTGGTACTTGGCCCTTATATTGG-CCCCTATC
* * * *
2957944 CCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGGTGCC
642 CCTCATCAAACCTCGAGAACTCAAACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
2958009 AGTAGCAATTAAAGTGTCTAAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTT
707 AGTAGCAATTAAAGTGTCTAAAATGAGGACACATTTTTCAAATGGTCACAAAATCTTGAACACTT
* *
2958074 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGCCTACCAAGTTT
772 CGAGTTTTTAGCTGAATTTTTTTGTGCATCCCAACAAAAATACAAGGATCACGCCTACCAAGTTT
* *
2958139 GGGG-TCAAAACTCCTTCC-AAAAAACTTTTAAAAAATC-CGGAACTGTAAAAA-TTTCAAAAAT
837 GGGGCT-AAAACTCCTTCCGAAAAAA-TTTT-AAAAATCTC-AAACTGCAAAAAGTTTCAAAAAT
2958200 CATGAAAAAT
Statistics
Matches: 802, Mismatches: 82, Indels: 29
0.88 0.09 0.03
Matches are distributed among these distances:
948 1 0.00
949 190 0.24
950 426 0.53
951 21 0.03
953 10 0.01
954 154 0.19
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (950 bp):
CGTGAAAAATAAAAACGACTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
TAAATCTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTCCCTAAACCCACCT
ACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTCACCGACCTAGTCGCCCGTCCGCCC
ACCCGCTCGTCTCATCGGTTGGCTTACGCATACAGAGCTCATTCCCAGTCTAAGATCAGACTGGA
TTGAGGGTTGCAGAAGCAGGATCGACAGCACACAGAAGGGGACCCGGCCGATCCCTGGCTTGCGC
ATCTCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACGTTGGCATACGGA
GTTCATTCCCAGCCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTG
CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGTCACCATCGC
TGAAGCATCACCGGAAAACCCAACCAGCGGCATTGGGGTTCAGGCGATCGGGGGGCCGGGGGCGT
GTGCGCACATGATGTGCGATGGGGGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAA
ACCTCGAGAACTCAAACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAAT
TAAAGTGTCTAAAATGAGGACACATTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTT
AGCTGAATTTTTTTGTGCATCCCAACAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCTAAA
ACTCCTTCCGAAAAAATTTTAAAAATCTCAAACTGCAAAAAGTTTCAAAAATTGATGAACTGTAA
AAAGTTTCAAAAATTTCGAACTGTAAAAAGTTTTTAAAAT
Found at i:2958629 original size:26 final size:26
Alignment explanation
Indices: 2958580--2958632 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2958570 GTTGACTTAG
***
2958580 GCATACAGAGTTCATTCTGTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2958606 GCATGCAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2958632 G
1 G
2958633 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2959084 original size:895 final size:894
Alignment explanation
Indices: 2954028--2960239 Score: 7083
Period size: 895 Copynumber: 6.9 Consensus size: 894
2954018 ACATGCTGGG
* **
2954028 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCTCAGTCTAAGATTGGAC
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
* * * **
2954093 CGAACCGAGGGTTGCAGTAGCACATGCGTGGGC-CTGGGCATGTGCTGGTGCTGCATTTTTCTTC
66 CGGACCGAGGGTTGCGGCAGCACATGC-TGGGCTC-GGGCATGTGCTGGTGCCACATTTTTCTTC
** * * * *
2954157 GCCAGGGCACCATCACCAGAGCATCACTGGAGAACGCTGACCTGCGGCATTAGGGTTTCCGACGA
129 GCC-GGGCACCATCGTCGGAGCATCACTGGAGAAC-CTGAACGGCGGCATTTGGG-TTCCGACGA
*
2954222 TGGGGGGTCCGGGTGAGGTGTGCGCACATGATGTTGCGATGGGTGCTTGGTACTTGGCCCTTATA
191 TCGGGGG-CCGGG-G-GGTGTGCGCACATGATG-TGCGATGGGTGC-TGGTACTTGGCCCTTATA
** *
2954287 TTCACCCCCTATCCCTCATCAAACCTTGAGAAACTCACCACCCCCTT-AAGAGCATTTGA-A-TT
251 TTGGCCCCCTATCCCTCATCAAACCTCGAG-AACTCA-CACCCCCTTAAAGAGCATTTGAGATTT
* * * *
2954349 TATAGGTTTGCTG-CAGTAGCCACTAAAGTGTCTGATATGGGGACACTTTTTTCAAATGCTCACA
314 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-
* ** * * *
2954413 AAAATCTTGTACACTATCGA-TTTTTAGCTGAAATTTTTGATGAAGGCCAACAAAAAAACAAGGA
378 AAAATCTTGTACACT-TCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGA
* * ** * *
2954477 TCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAATTTGAAAAAAAATCCCGAGCCGAT
442 TCACGTCTACCAAGTTTGGGGTCAAAACTCCTTCCAAAAAATTT--TAAAAAATCCCGAACCG-T
* * ** *
2954542 AAAAGTTTGGAAAAATCTATG-AAAATAGAAAAGGAGTCGTCTTGCCGTGAAACTTCACGTGAAG
504 AAAAATTT-CAAAAATC-ATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * * * *
2954606 GCTTAAGGGACAATTGGATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGATG
567 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
* * *
2954671 ATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGAT
632 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * * *
2954736 GTATTGCCTGCCCGCCTGCCTGCCCGTCCACTCGTTTCGTTGGTTGGCTTAGGTATACGGAGTTC
697 GTA--G--TGCCCG-C--CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* ** ** * * * * * *
2954801 ATTCCAAGTCTAAGATTGGACCAGACTGAGGGTTGTGGTAGCAGGATCGATAGCACGCATAGGGG
754 ATTCCCAGTCTAAGATCAGACTGGATTGAGGGTTGTAGAAGCAGGATCGACAGCACGCAGAGAGG
* * ** * * * *
2954866 GACCTGACCGATCCTCGGCTTATGCGTCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTTGTT
819 GACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTT
*
2954931 TCATGGGTTGA
884 TCGTGGGTTGA
* * *
2954942 CTTAAGCATACGGAGTTCATTCCCAGTTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGAC
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * *
2955007 CAGACTGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
66 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG-
* * * * *
2955072 CGGGGCACCATCGCCGGAGCATC-GTCGGAGAACCTGACCGACGGCA-TTGCGGTTCCGACGATC
130 CCGGGCACCATCGTCGGAGCATCACT-GGAGAACCTGAACGGCGGCATTTG-GGTTCCGACGAT-
* * *
2955135 CAAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGG--CTCA-A-----
192 C-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
** *
2955192 CCCCTATCCCTCATCAAAAGTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
256 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * **
2955257 TTGCTGCCAATAGCCATTAAAGTGTCTGTAATGGGGACACTTTTTTCAAATAATCACAAAATCTT
321 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* ** *
2955322 GTTACACTACGAG-TTTTAGCTGAATTTTTTTGCGCATGCCAAAAAAAATACAAGGATCACGTCT
386 G-TACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * *
2955386 ACTAGGTTTGGGGCCAAAA-TGCCTTCCGAAAAAATTTTAAAAAATCCC-AACCGCCAAAAAGTT
450 ACCAAGTTTGGGGTCAAAACT-CCTTCC-AAAAAATTTTAAAAAATCCCGAACCG-TAAAAA-TT
* * ** *
2955449 TCAAAAATCATG-AAAATAGAAAATGAGGTCAACCTTGCCATGAAACTTCACGTAAAGGCTTAAG
511 TCAAAAATCATGAAAAATAGAAAA-CAAGTC-GTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
2955513 GGACCATTGTATGAATTTACAAGCCA-ACAAAATGGCATTGGCACATAGAAATATGAAGATTTGC
574 GGACCATTGTATGAATTTACAAGCCATA-AAAATGGCATTGGCACGTAGAAATATGAAGATGTGC
* * * *
2955577 CTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCAGACCGGTATAGT-
638 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-G-A-CGTA
* * * *
2955641 GCCTGCCCCCCCGCCCGTCCGCTCGTTCCGTCGGTTGGCTTAGGC-TACGAAGTTCATTCCCAGT
700 G--TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * * * *
2955705 CTAAGATCAGATTGGACTGAGGGTTGTGGCAGCAGGATC-AGCAGCACGAAGAGGGGGACCTGAT
763 CTAAGATCAGACTGGATTGAGGGTTGTAGAAGCAGGATCGA-CAGCACGCAGAGAGGGACCCGAC
* * * * * *
2955769 CGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACACTCGTTTCATGGGT
827 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
2955834 TGA
892 TGA
* ** * * **
2955837 CTTAGGCGTACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCTCATTCTAAGATTGGAC
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * **
2955902 CGGATCAAGGGTTGCGGCCGCACATACTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCAT
66 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGC
* * *
2955967 CGAGGCAGCATCGTCGGAG-AAC-CT---G-ACC-G-A---CGGC-TTTGGGGTTCCGATGATCG
131 CG-GGCACCATCGTCGGAGCATCACTGGAGAACCTGAACGGCGGCATTT-GGGTTCCGACGATCG
*
2956020 GGGGCCGGGGGGTGTGGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
194 GGGGCCGGGGGGTGT-GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
2956085 CCTATCCCTCGTCAAACCTCGGGAACTCACACCTCCTT-AAGAGCATTTGAGATTTTACAGGTTT
258 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
2956149 GCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGG
323 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT-G
* * * *
2956214 TACACTTTGAGTTTTTAGCTGAATTTTTTTGTT-CCTGCCAAAAAAAATACTAGGATCACGTCTA
387 TACACTTCGAGTTTTTAGCTGAATTTTTTT-TTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * *
2956278 CCAAGTTTTGGGGCCAAAACTCCTTCCGAAAAATTTTAAAAAAATCTCAAACCGTAAAAAATTTC
451 CCAAG-TTTGGGGTCAAAACTCCTTCCAAAAAATTTT-AAAAAATCCCGAACCGT-AAAAATTTC
* * * * *
2956343 AAAATTCCGTGAAAAATAG-AAACGACTGGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
513 AAAAAT-CATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * *
2956407 CCATTGTATGAATTTACTAGCCATAAAAATGGCATTGGCACGTAGAAATATGAATATGTCCCTAA
577 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAA
2956472 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG
642 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG
* * * *
2956537 CCCGTCCGTCCACCCGCTCGTTTTGTCGGTTGGCTTACGCATACAGAGTTCATTCCCAGTCTAAG
707 CCCG--C--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * * * * *
2956602 ATCAGACTGGATTGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGA-AGGGGACCTGGCCGATC
768 ATCAGACTGGATTGAGGGTTGTAGAAGCAGGATCGACAGCACGCAGAGA-GGGACCCGACCGATC
* * ** **
2956666 CCTGGCTTGCGCATCTCGCCCCTCTGGCCTACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGA
832 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGA
* **
2956729 CGTT-GGCATACGGAGTTCATTCCCAGCCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGA
1 C-TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
** *
2956793 CTAGACCGAGGGTTGCGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG
65 CCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG
* * * * * * * *
2956858 TCGGGTCACCATCG-CTGGAGCATCACCGGAAAACC-CAACCAGCGGCATTGGGGTTCAGGCGAT
130 CCGGG-CACCATCGTC-GGAGCATCACTGGAGAACCTGAA-CGGCGGCATTTGGGTTCCGACGAT
* * *
2956921 CGGGGGGCCGGGGGCGTGTGTGCACATGATGTGCGATGGGGGCTGGTACTTGGCCCTTATGTTGG
192 C-GGGGGCCGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
2956986 -CCCCTATCCCTCATCAAACCTCGAGAACTCAAACCCCCTTAAAAAGCATTTGAGATTTTACAGG
255 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
2957050 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCT
320 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
2957115 TGAACACTTCGAGTTTTTAGCTG-ATTTTTTTTGTGCATCCCAACAAAAATACAAGGATCACGTC
385 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTC
*
2957179 TACCAAGTTTTGGG-CTAAAACTCCTTCCGAAAAAATTTT-AAAAATCTCAAACTGCAAAAAGTT
449 TACCAAGTTTGGGGTC-AAAACTCCTTCC-AAAAAATTTTAAAAAATC-C---C-G----AA---
**
2957242 TCAAAAATTGATGAACTGTAAAAAGTTTCAAAAATTTCGAACTGTAAAAAGTTTTTAAAATCGTG
500 -C-------------C-GTAAAAA-TTTCAAAAA--TC--A-TG-AAAAA---TAGAAAA-C---
* * * *
2957307 AAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGGATGCTTAAGGGACCATTGTATAA
536 -----------A--AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
2957372 ATCTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
588 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
* ** * * * * *
2957437 ACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTCACTGGCCTAGTGCCCGTCCGCCCACCC
653 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCC
* * * * * *
2957502 GTTCGTCTCATCGGTTGGCTTAGGCATACGGAGCTCATTCCCAGTCTAAGATCGGATTGGATTGA
718 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATTGA
* * *** *
2957567 GGGTTGTAGAAGTAGGATCGACAGCACGCAGAGGGGGACCCGGTTGATCCCCTGCTTGCGCATCC
783 GGGTTGTAGAAGCAGGATCGACAGCACGCAGAGAGGGACCCGACCGATCCCCGGCTTGCGCATCC
* * *
2957632 TGCCCCTCTGGTCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGA
848 CGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGA
*
2957679 CTTAGGCAT-CGGAGTTCATTCCGAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
* * * *
2957743 TGGACCGAGGGTTGTGGCAGCACATGCTGGGCCTCGTGCATGTGCTGGTGTCACATTTTTCTTCG
66 CGGACCGAGGGTTGCGGCAGCACATGCTGGG-CTCGGGCATGTGCTGGTGCCACATTTTTCTTCG
* * * **
2957808 CCGGGCACCATCATCGAAGCATCACCGGAGAACCTGAACGGCGGCATTTGGGTTCCGGTGATCGG
130 CCGGGCACCATCGTCGGAGCATCACTGGAGAACCTGAACGGCGGCATTTGGGTTCCGACGATC-G
*
2957873 GGGGTCGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
194 GGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
2957938 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTT
258 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * * *
2958003 GGTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGT
323 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
2958068 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGCCTACC
388 ACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* *
2958133 AAGTTTGGGGTCAAAACTCCTTCCAAAAAACTTTTAAAAAATCCGGAACTGTAAAAATTTCAAAA
453 AAGTTTGGGGTCAAAACTCCTTCCAAAAAA-TTTTAAAAAATCCCGAACCGTAAAAATTTCAAAA
* *
2958198 ATCATGAAAAATAGAAAACAAGTCTTCTTGCCCTGAAACTTCACGTGAAGGCTTAAGGGACCATT
517 ATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * * *
2958263 GTATAAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAGATATGAAGATGTGACTAAACCCA
582 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCA
* ** *
2958328 CCTACCACCCTATC-ATCCACGGCTTGCGCATCCCGCCTCTCTCACCGACCTAGTGCCCGCCCGC
647 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
* * *
2958392 CCGCCCGCTCATTTCATCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTG
712 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTG
* * * * * *
2958457 GATTGAGGGTTGTAGAAGTAGGATCGACAGCACGTAGAGAGGGACCCGGCCAATCCCCTGCTTGT
777 GATTGAGGGTTGTAGAAGCAGGATCGACAGCACGCAGAGAGGGACCCGACCGATCCCCGGCTTGC
* ** * * * *
2958522 GCCTCTTGCCCCTCAGGCCGGTTGAGCACCCGTACGCTCATTTCGTGGGTTGA
842 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGA
* *** *
2958575 CTTAGGCATACAGAGTTCATTCTGTGTCTAAGCATGCAGAGTTCATTCCCAGTCTAAGATCAGAC
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * *
2958640 CGGATCGAGGGTTGTGGCAGCACATGCTGGGCTCGTGCATGTGCTGGTGTCGCATTTTTCTTCGC
66 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGC
* *
2958705 CGGGCACCATCGTCGGAGCATCACTGGAGAACCTGAACGGCGGCATTTGGGTTCTGGCGATCGGG
131 CGGGCACCATCGTCGGAGCATCACTGGAGAACCTGAACGGCGGCATTTGGGTTCCGACGATCGGG
* *
2958770 TGGTCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
196 -GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
2958835 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGG
260 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
2958900 TGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCAC
325 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
*
2958965 ACTTCAAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
390 ACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* **
2959030 GTTTGGGGTCAAAAATCCTTCCAAAAAACTTTTAAAAAATCCCGAAAAGTAAAAATTTCAAAAAT
455 GTTTGGGGTCAAAACTCCTTCCAAAAAA-TTTTAAAAAATCCCGAACCGTAAAAATTTCAAAAAT
*
2959095 CGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
519 CATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * *
2959160 ATAAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATCTGAAGATGTGACTAAACCCACC
584 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
* * * * * *
2959225 TACCACCCTATCGATCCACGACTTGCGCATCCCCTCTTTTTGGCCGGCGTAATGCCCGCCTGTTC
649 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC----C
*
2959290 GCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
710 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * * * * * **
2959355 TAGATCGAGGGTTGCAGTAGCAGGATTGGCACCACACAGACAGGGACCCGACCAATCCTAGGCTT
775 TGGATTGAGGGTTGTAGAAGCAGGATCGACAGCACGCAGAGAGGGACCCGACCGATCCCCGGCTT
** ** * * *
2959420 GCGCATATCGCCCCTCTGAAC-GTTGAGCACCCGTACACTCGTTTCGTGGGTTGA
840 GCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGA
* *
2959474 CTTAGGCAATATGGAGTTCATTTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
1 CTTAGGC-ATACGGAGTTCA-TTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG
* * * ** * * *
2959539 ACCAGACCGAGGTTTACCGGCAGCACATATTCGGCTTGAGCATGTGCTGGTGCCACATTTTGTCT
64 ACCGGACCGAGGGTT-GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTT-TCT
* * * * *
2959604 TCGCGGGGCACCATCG-CGCAGCATC-GTCGAGAACCTG-ACGGCGGCA-TTGTG-TCC-ACGAT
127 TCGCCGGGCACCATCGTCGGAGCATCACTGGAGAACCTGAACGGCGGCATTTGGGTTCCGACGAT
* *
2959663 CGGGGGCCAGGGGCGTATGCGCAC-TGATGTGCGATGGG-GCTGGTAC-T-GCCCTCTATATTGG
192 CGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT-TATATTGG
* ** * *
2959724 CCCCCTATCCCTCATC-AATCTCGGAGAACTCACA-AACCTTAAACAGCATTTGAGATTTTA-TG
255 CCCCCTATCCCTCATCAAACCTC-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * *
2959786 GTTTGCCTGCCAAGTAGCCATTAAACTGTCTAAAATTGGGACACTTTTTTTCAACA-GGTCACAA
319 GTTTG-CTGCC-AGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAA-ATGGTCACAA
** *
2959850 AATCTT-TACCACTTGCGAG--TTTAGCTG-ATTTTTTTAGGCATG-GAACAAAAATACAAGGAT
380 AATCTTGTA-CACTT-CGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGAT
* **
2959910 CACGGCTACCAAGTTTGGGGTCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAA
443 CACGTCTACCAAGTTTGGGGTCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGTAAA
** * *
2959975 AAGTTTCAAAAATTGTGAGAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
507 AA-TTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * *
2960040 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACATAAAAATATGAAGATGT
571 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGT
* * * * * *
2960105 ACCTAAACCCACCTACCACCCTATCGATCCACAGCTTCCGCATCTCATCTCTCTGGCGGACGTAG
636 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
* * * * * * *
2960170 TGCCTGCCCTCCCACCCGCTCGTTTTGTCGGTTGGCTTAGGAATACGAAGTTCATTCCTAGTCTA
701 TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
2960235 AGATC
766 AGATC
2960240 GGATCAGACC
Statistics
Matches: 4625, Mismatches: 510, Indels: 351
0.84 0.09 0.06
Matches are distributed among these distances:
882 15 0.00
883 33 0.01
884 17 0.00
885 4 0.00
886 1 0.00
887 9 0.00
888 3 0.00
889 61 0.01
890 97 0.02
891 263 0.06
892 371 0.08
893 256 0.06
894 88 0.02
895 731 0.16
896 400 0.09
897 219 0.05
898 28 0.01
899 83 0.02
900 324 0.07
901 161 0.03
902 130 0.03
903 132 0.03
904 142 0.03
905 6 0.00
906 3 0.00
908 10 0.00
909 11 0.00
910 19 0.00
911 13 0.00
912 19 0.00
913 64 0.01
914 90 0.02
917 5 0.00
918 2 0.00
919 1 0.00
921 2 0.00
923 9 0.00
924 7 0.00
927 6 0.00
928 10 0.00
929 1 0.00
930 1 0.00
932 2 0.00
933 5 0.00
936 1 0.00
937 3 0.00
938 2 0.00
942 2 0.00
946 1 0.00
949 188 0.04
950 401 0.09
951 16 0.00
952 1 0.00
954 156 0.03
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (894 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGC
CGGGCACCATCGTCGGAGCATCACTGGAGAACCTGAACGGCGGCATTTGGGTTCCGACGATCGGG
GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
TTTGGGGTCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTCAAAAATCA
TGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC
CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATT
GAGGGTTGTAGAAGCAGGATCGACAGCACGCAGAGAGGGACCCGACCGATCCCCGGCTTGCGCAT
CCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGA
Found at i:2963843 original size:26 final size:26
Alignment explanation
Indices: 2963805--2963854 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
2963795 CACTTAGGCT
2963805 TACGAAGTACATTCCCAGTCTAAGCA
1 TACGAAGTACATTCCCAGTCTAAGCA
*
2963831 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTACATTCCCAGTCTAAG
2963855 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (26 bp):
TACGAAGTACATTCCCAGTCTAAGCA
Found at i:2965130 original size:902 final size:904
Alignment explanation
Indices: 2960212--2966960 Score: 8457
Period size: 902 Copynumber: 7.5 Consensus size: 904
2960202 TGGCTTAGGA
* * * * *
2960212 ATACGAAGTTCATTCCTAGTCTAAGATCGGA-TCAGACCGAGGGTTTCGGTAGCACATGCTGGGC
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCAGCAGCACATGCTGGGC
* * * *
2960276 TCGGGCATATGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATTGCCGGAGAA
65 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAA
* * ** * **
2960341 CCTGAGC-AGCGACATTGGGGTTCCGGTGAT-TGGCTGGCCGGGGGGGTGTGCGCACATGATGTG
130 CCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
2960404 CGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
2960469 ACCCCCTTAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCAATTAAATTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
2960534 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAATTTTTCA-CTGAATTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-AGCTGAA---TTTT
* * * * * * ** *
2960598 TTTTTGCAAGCC-ACAAAAATACAGGGATCTCATCTACCAAGTTTGGGGCCAAAATTCCTCCCGA
385 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAA
* ** *
2960662 AAAAATTTTAAAAAATCTCGAACCTTAAAAAGTTTCAAAAATAATGAAAAATAGAAAACGAGTTG
450 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
2960727 TTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
2960792 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
580 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * ** *
2960857 TGCGCATCCCGTTTCTCTGGCCGGCGTAGTGCCCACCCGCCCATCCGCCCACTCATTTCGTCGGT
645 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGGT
* * * * * * * * *
2960922 TGGCTTAGGTATACGAATTTCATTCCCAGTCTAAGGTTAGG-CTGAACTGAGGGTTACGGTGGCA
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA-GATCGGACCGGACTGAGGGTTGCGGTAGCA
* * * * *
2960986 GGATCGGTAGCAGGATTGGCAGCGTGCAAAGGGGGACCCGGTCAATCGCCAGCTTGCGCATCCTG
774 GGATCGGT------A---GCA-C--GCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCG
* * * * *
2961051 CCCCTCTGGCTGCCTGAGCGCCTGCACGCTCGTTTCG-TGGGTTGACTTAGGCAGACGGATTTCA
827 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT-GATGGGTTGACTTAGGCATACGGAGTTCA
*
2961115 TT-CCAGTCTCAGC
891 TTCCCAGTCTAAGC
* * *
2961128 ATACAAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGTAGCACATGCTGTGCT
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCT
* * * * *
2961193 AGGGCATGTGCTGGTGCCACATTTTTCTTCCCCAGGGCACCATCGCCGTAGCATCGCCGAAGAAC
66 CGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAAC
* * * * * ** * *
2961258 TTGATCGGCGGCAATAGGGTTCTAACGATCGGGGGGGCC-GAGGGGTGTGCGCACATGATGTGTG
131 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
* *
2961322 GTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
2961387 CCCCATAAAGAGCTTTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
2961452 GGACGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * **
2961517 CATGCCAACAAAAATACAAGGATCATGTCTACCATGTTTTGGGCCAAAACTCCTTTTGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAAT
*
2961582 TTTAAAAAATC-CTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
456 TTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
2961646 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGGATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
2961711 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGGCTTGTGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* ** * * *
2961776 ATCCCGTCTCTCTAGCCGGTGTAGT----GCCCGCCTGCCCGTCCGCTCGTTTCGTCGGTTGGCT
650 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCT
* * ** * *
2961837 TACGCATACGGAGTTCATTCCCAGTCTAAGATCGGTCCAAACCGAGGGTTGCGGTAGTAGGATCG
715 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAGGATCG
** * * *** * * *
2961902 ACAGCACGCAAAGGGGGACCCGATCGATTTTCGGCTTGCCCATCCCGCCTCTATGGCCGGCTGAG
780 GTAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
*
2961967 CGCCCGCACGCTCGTTTCG-TGGGTTGACTTAGGCATACGGAGTTCAATCCCAGTCTAAGC
845 CGCCCGCACGCTCGTTT-GATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
** * ** *
2962027 ATACGGTGTTCATT-CCAATCTAAGATTAGA-TCGGATCGAGGGTTGCAGCAGCACATGC-GGCG
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCAGCAGCACATGCTGG-G
* * * **
2962089 GTCGGGCATGTGCTAGTGTCGTATTTTTCTTCGCCGGGGCACCAT---------A--GCCGGAGA
64 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* ** *
2962143 ACCTGACCGGCGGCATTGGGGTTCCGGTGATC-GGGGGG-CTGGGGGGTGTGCGCACATGATGTG
129 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * **
2962206 CAACGGGTGCTGGTACTTGGCCCTTATATTTTCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
2962271 ACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
2962336 GGGGACACTTTTTTCAAATGGACACAAAATATTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** *
2962401 TGCATGCCAACAAAAGA-ACAAGGATCACGTCTACCATTTTTGGGGCCAAAACTCC-TTAAGAAA
389 TGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCA-AAA
* * * *
2962464 AAATTTTAAAAAATCTGGAACCGCAAAAAGTTTCAAAATTTGTGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
2962529 TTACCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** *
2962594 CATTAGCACATAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
2962659 CGCATCCCGTTTCTCTGGTCGGCGTA--G--CGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTG
647 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTG
** * * * **
2962720 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAATGGACTGAGGGTTACAGCAATAGGA
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAGGA
* * * * * *
2962785 TCGGCAGCATGCGGAGGGGAAACCGGCCGAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
777 TCGGTAGCACGCAGAGGGGGACCCGGTCG-ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * * *
2962850 TGAGCGCCCGCACGCTCATTTCATCGGTTGACTTAGGCATACGAAGTTCATTCCGAGTCGAAGC
841 TGAGCGCCCGCACGCTCGTTTGATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * ** * * *
2962914 ATACGGAGTTCATTCCCAGCCTAAGATCGGACCAGACTGAGGGTCTGTAGTAGCACATTGCTGGG
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGT-TGCAGCAGCACA-TGCTGGG
* * *
2962979 CTCGGGCATGTGCTTGGTGGCCACATTTTTCTTCGTGCGAGGCACCATC-CATCGGAGCATCACC
64 CTCGGGCATGTGC-TGGT-GCCACATTTTTCTTCG-CCGGGGCACCATCGC--CGGAGCATCGCC
* **
2963043 GGAGAACCTGACCGACAGGCATTGGGGTTCCGACGATCAGACGGG-CGAGGGGGGTGTGCCGCAA
124 GGAGAACCTGACCGAC-GGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTG-CGC-A
* * *
2963107 CATGAATGTGCGAT-GGTGCTGGTAC-TGGCCTTTATATTGGGCCCCTATCCCTCATCCAACCTC
185 CATG-ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
2963170 GAGAACTCACACCCCATTAAAGAGCATTTTGAGATTGTTTACAGGTTTG-TGCTAGTTAGCCCAT
249 GAGAACTCACACCCCCTTAAAGAGCA-TTTGAGA-T-TTTACAGGTTTGCTGCCAG-TAG-CCAT
* * * ** * *
2963234 TAAAGTGCCTAAAATGAGGACACTTTTTTTCAAATGGTTGCAAAATCTTGTACGCTTCGAGGTTT
309 TAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
2963299 TAGCTGAATTTTTTTATGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAC
373 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * *
2963364 AACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA
438 AACTCCTTTCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
*
2963429 GAAAACGAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
503 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* ** * **
2963494 AGCCATAAAAATGGTATTGGCACATAGAAATATGAAGATGTGCTTAAACCCACCTATTACCCTAT
568 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * *
2963559 CGATCCACGGCTTGCGCATCCCGTATCTCTGGTCGACGTAGTGCCCTCCCGCCTGCCCGCCC-CT
633 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCT
* * * * * *
2963623 CATTCCGTCGGTTGGGTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAATTGAGGG
698 CATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGG
** * * * *
2963688 TTGCGGTAGCAGGATCGGTAGCACATAGAAGGGGACACGGTCTATCCTCGGCTTGCGCATCCCGC
763 TTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGC
* * * * * * *
2963753 CCCTCTAGCCGGCTGAGCGCCCGGACGCTCATTTCG-TGGGTTCACTTAGGCTTACGAAGTACAT
828 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT-GATGGGTTGACTTAGGCATACGGAGTTCAT
2963817 TCCCAGTCTAAGC
892 TCCCAGTCTAAGC
* * * *
2963830 ATACGAAGTTCATTCCCAGTCTAAGATCAGA-TCGGACCGAGGGTTACAGCAGCACGTGTTGGGC
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCAGCAGCACATGCTGGGC
** * * * * * *
2963894 TAAGGCTTGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATTGTCGGAGAA
65 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAA
* * * * * * * *
2963959 CCTGGCTGGCGGCATTAGGGTTCCTACGATC-GGGGGGCC-GGGGGTTGTGCGCACGTGATGTAC
130 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
*
2964022 GATGGGTGCTGGTACTCGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
2964087 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTTTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
2964152 GGGACACTTATTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** * * * * *
2964217 TCACACCAACAAAAAAACAAGCATCACGTCTACCAAGTTCGGGACCAAAACTCTTTTCAAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAA
* * *
2964282 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAACACAAGTCATCTTG
455 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
2964347 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * * *
2964412 TGGCATGCAGAAATATGAAGATGTGCCTAAATCCAACTACCACCCTCTCTATCCATGGCTTGCGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** * * *
2964477 ATCCCACCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCGCCCATTTCGTCGATTGGCT
650 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCT
* * *** *
2964542 TAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGATTGAGGGTTGCAACAGTAGGATCG
715 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAGGATCG
* * * * * * *
2964607 GTAGCACGCAGAGGCGGATCTGGTCGATCCCCAGCTTGCGCATCCAGCCCATCTGGCTGGCTGAG
780 GTAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
*
2964672 CGCCCGCACGCTCGTTTGATGGGTTGACTTAGGCATAAGGAGTTCATTCCCAGTCTAAGC
845 CGCCCGCACGCTCGTTTGATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
*** * ** *
2964732 ATACGAAGTTCATTTTGAGTCTAAGATCGGACTGGACCAAGGGTTGTGGCAGCCCATGCTGGGCT
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCT
* * * ** ** *
2964797 CGGGTAGGTGCTGGTGCCGCATTTTTCTTTACCGGGGCACCATCGCCGGAGCATCATCGAAGAAC
66 CGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAAC
* **
2964862 CTGACCGACGGCATTGGGGTTCCGACGATC-GAGGGGCCGGGGGGGTGTGCGCACATGATGTAAG
131 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
*
2964926 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
2964991 CCCCTTAAACAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
2965056 GGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTATG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
2965120 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCC-TTCTGAAAAAA
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-AAAAAAA
* * * * * *
2965184 TTTTAAAAAATC-CTGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGTGTCATCTA
455 TTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
2965248 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
2965313 TTGGCAGGCAGAAATAGGAAGATGTGCCTAAAGCCACCTACCACCCTCTCGATCCACGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
2965378 CATCCCGTCTCTCTGGCCGGCACAGT-GCCTGCCCGCCTGCTCGCCCGCCCGCTCGTTTCATCGG
649 CATCCCGTCTCTCTGGCC-G-AC-GTAG--TGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGG
*
2965442 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCA
709 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCA
* * * * ** * ** ** * *
2965507 AGATCGATAGCACGCAGAGGCGGACTCGACCGATCCCCGGATTATGCATCATGCCCCTCTAGCAG
774 GGATCGGTAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
2965572 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
839 GCTGAGCGCCCGCACGCTCGTTTGATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
2965637 C
904 C
* * * * ** * * *
2965638 ATACGGAGTTTATTCTCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGTAGCACATGCTGGGCT
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCT
* ** * * * *
2965703 CGGGCATATGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATAGCCGGAGAAC
66 CGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAAC
* * * * * *
2965768 CTGACCAACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGAGGTGTGCCCACATGATGCGCA
131 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
* * * * * *
2965833 ATGGGTGCTGGTACTTTGTCCATATATTGGCCCCCTAACCCTCATCAAACCTTGAGAGCTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
2965898 CCCCTTAAAGAGCATTTGTGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
2965963 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
2966028 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAAT
* * * *
2966093 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAATTCAG-GAAAAATAGAAAACGAGTCATCTTG
456 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC-GTGAAAAATAGAAAACGAGTCGTCTTG
*
2966157 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * * *
2966222 TGGCAGGCAAAAATATCAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGTCATGCGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
2966287 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCTCGCCCGCTCGTTTTGTCGGTTGGCT
650 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCT
* * ** ** * *
2966352 TAGGCATACGGAGTTCAATT-CTAGTCTAAGATCGGACCAGACCAAGGGTTATGATAGCAAGATC
715 TAGGCATACGGAGTTC-ATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAGGATC
* * * * ** * * *
2966416 GATAGCATGTAAAGGGGGACCCGACCAATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGACTGA
779 GGTAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
** * * *
2966481 GCGCCTACACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGC
844 GCGCCCGCACGCTCGTTTGATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * *** *
2966542 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCT-AACCGAAGGTTATGGCAGCACATGCTAGGC
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGA-CTGGACCGAGGGTTGCAGCAGCACATGCTGGGC
* * * ** * *
2966606 TCGGGCATGTGCTGGTGCCAAATTTTTTTTTCGCTGGGGCACCATCATCGGAGCATCGTCAGAGA
65 TCGGGCATGTGCTGGTGCCACA-TTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * * *
2966671 ACCTGACTGGCGGCATTAGGGTTCTGGCGATCGGGGGGGTC-GGGGGGTGTGCGCACATGATGTG
129 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * ** * * *
2966735 CGATGGGTGCTAGTACTTGG--CTTTTATTATCCCCCTATCCCTAATCAAACCTTGAAAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
2966798 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
2966863 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
2966928 TGCATGCCAACAAAAATACAAGGATCACGTCTA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTA
2966961 AGATGTGCCT
Statistics
Matches: 5067, Mismatches: 683, Indels: 180
0.85 0.12 0.03
Matches are distributed among these distances:
885 3 0.00
886 566 0.11
887 130 0.03
888 20 0.00
889 11 0.00
890 16 0.00
891 5 0.00
892 13 0.00
893 10 0.00
897 2 0.00
898 165 0.03
899 21 0.00
900 1 0.00
901 328 0.06
902 778 0.15
903 216 0.04
904 316 0.06
905 114 0.02
906 415 0.08
907 215 0.04
908 272 0.05
909 87 0.02
910 121 0.02
911 24 0.00
912 32 0.01
913 44 0.01
914 574 0.11
915 11 0.00
916 449 0.09
917 94 0.02
918 14 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (904 bp):
ATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAAC
CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAAT
TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAGGATCGG
TAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCCGCACGCTCGTTTGATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
Found at i:2965640 original size:26 final size:26
Alignment explanation
Indices: 2965610--2965662 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2965600 GTTGACTTAG
2965610 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* * *
2965636 GCATACGGAGTTTATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2965662 G
1 G
2965663 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2966543 original size:26 final size:26
Alignment explanation
Indices: 2966514--2966566 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2966504 GTTGACTTAG
*
2966514 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2966540 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2966566 G
1 G
2966567 ATCAGACCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2967943 original size:4 final size:4
Alignment explanation
Indices: 2967934--2967963 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
2967924 CCGGCACAGT
*
2967934 GCCC GCCC GCCC GCCC GCTC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
2967964 TCGTTTCGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.70, G:0.27, T:0.03
Consensus pattern (4 bp):
GCCC
Found at i:2967964 original size:12 final size:12
Alignment explanation
Indices: 2967934--2967966 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
2967924 CCGGCACAGT
*
2967934 GCCCGCCCGCCC
1 GCCCGCTCGCCC
2967946 GCCCGCTCGCCC
1 GCCCGCTCGCCC
2967958 GCCCGCTCG
1 GCCCGCTCG
2967967 TTTCGTCGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.00, C:0.67, G:0.27, T:0.06
Consensus pattern (12 bp):
GCCCGCTCGCCC
Found at i:2968173 original size:26 final size:26
Alignment explanation
Indices: 2968143--2968195 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2968133 GTTGACTTAG
*
2968143 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
2968169 GCATACAGAGTTTATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2968195 G
1 G
2968196 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2969532 original size:902 final size:902
Alignment explanation
Indices: 2967261--2971603 Score: 5981
Period size: 902 Copynumber: 4.8 Consensus size: 902
2967251 GTTGACTTAG
* * * *
2967261 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACTGGACCGAGGGTTGTGACAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACT-GACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
2967326 CTCGGGCATGTGCTGGTGCCGTATTTTTTTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* ** * * * * *
2967391 ACCTGATCGGTGACGTTGGGGTTCCAACGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
2967456 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
2967521 CCCGCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
2967586 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACCCTTCGAGTTTTTGGCTGAATTGTTTTAT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
2967651 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
2967716 TTTAAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATG-AAAATAAAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
2967780 CCATGAAACTTCACGTGAACG-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * * *
2967844 TGGCAGGTAGAAATAGGAAGAAGTCCCTAAAGCCACCTACCACCCTATCGATCCACGGCTTCCGC
585 TGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
**
2967909 ATCCCGTCTCTCTGGCCGGCACAGTGCCCGCCCGCCCGCCCGCTCGCCCGCCCGCTCGTTTCGTC
650 ATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCG--C-C-CGCCCGCCCGCTCGTTTCGTC
* *
2967974 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAG
707 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAG
* * * * * * * **
2968039 CAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGATTGTGCATCATGCCCCTCTGGC
772 CAAGATCGGCAGCACACAGAGGGGGACCCAACCAATCCCCAGCTTGCGCATCCCGCCCCTCTGGC
* *
2968104 AGGCTGAGCG-CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
837 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
2968168 A
902 A
* * * * *
2968169 GCATACAGAGTTTATTCTCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGA-CTGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
2968234 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGTGGGAGCATAGCCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* *
2968299 ACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGAGGTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGG-GGTGTGCGCACATGATGTG
* * * * * *
2968364 CAATGGGTGCTGGTACTTTGCCCATATATTGGCCCCCTAACCCTCATCAAACCTTGAGAGCTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
2968429 ACCCCCTTAAAGAGCATTTGTGATTTTACAAGTTTGCTGCCAGGAGCCAATAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
2968494 GGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
2968559 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
2968624 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAATTCATGAAAAATAGAAAACGAGTCATCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
2968689 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
2968754 TTGGCAGGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATTCACGTCATGCG
584 TTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
2968819 CATCCCGTCTCTCTGGCAGACGTAGTGCCCGCCCGCCTGCTCGCCCGCTCGTTTTGTCGGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * **
2968884 TTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACAATAGCAAGATC
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAAGATC
** * * *
2968949 GATAGCACACAAATGGGGACCCAACCAATCCCCAGCTTGCACATCCCGCCCCTCTGGCCGGCTGA
779 GGCAGCACACAGAGGGGGACCCAACCAATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
2969014 GCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTTATTCCCAATCTAA
844 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
2969073 GCATACAGAGTTCTTTCCCAGTCTAAGATCGGCCTGACCGAGGGTTGCGGCAGCACATGCTAGGC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGACCGAGGGTTGCGGCAGCACATGCTGGGC
* ** * * *
2969138 TCAGGCATGTGCTGGTGCCAAATTTTTCTTCGCCGGGGCACCATCATTGGAGCATCGTCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * * * * *
2969203 CCTGACTGGCGGTATTAGGGTTCTGGCGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCG
131 CCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
2969268 ATGGGCGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCAAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
2969333 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
**
2969398 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAAGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * ** *
2969463 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTTGAAAATAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * * * ****
2969528 TTTAAAAAATCCCGAACTGCACAAAGTTTCAAAAATCAGGAAAAATGGAAAACGAGTCGTCCCAT
456 TTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
2969593 CATGAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
2969658 GGCATGCAGAAATAAT-AAGATGTGCCTAAACCCACCTACCA-CTTGACCGATCCATGGCTTGCG
586 GGCAGGCAGAAAT-ATGAAGATGTGCCTAAACCCACCTACCACCCT-ATCGATCCACGGCTTGCG
* * * * * * *
2969721 TATCCAGTCTCTCTGGCCGGTGCAGTTCCCACCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * *
2969786 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGACTGAGGGTTGTGGTAGCAGGAT
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGTAGCAAGAT
* * * * * *
2969850 CGGCAGCACATAGAGGGGGACCCAGTCGAA-CCCCAGCTTGCGCATCTCACCCCTCTGGCTGGCT
778 CGGCAGCACACAGAGGGGGACCCA-ACCAATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCT
*
2969914 GAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * *
2969975 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCAAGGGTTGCGGCAGCACATGCTAGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACT-GACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
2970040 CTCGGGCATGTGCTGGTGTCACTTTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGAAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
*
2970105 ACCTGACCGACGGCATTAGGGTTCCGACGATC--GGGGGCCGGGGGGTGTGCGTACATGATGTGC
130 ACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
2970168 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
2970233 CCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
2970298 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACTCTTTGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
2970363 GCATGCCAACAGAAATACAAGGATCATGTCTGCCAAGTTTGGCGCCAAAACTCGTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
2970428 TTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATTATGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
2970493 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
2970558 TGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGGTTGCGC
585 TGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
2970623 ATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGCTCGCCCGCTCGTGTCGTCGGTTGGCT
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * *
2970688 TAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCG
715 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAAGATCG
* *** * * * *
2970753 GCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCCCATCCCGCCCCTTTGGCCGGCTGAG
780 GCAGCACACAGAGGGGGACCCAACCAATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
2970818 CGCCCGCACGCCCGTTTCGTGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
845 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
2970876 G-AT-C-G-G---------A--C------C-G---GACCGAGGGTTGCGGCAGCACATGCTGGGC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * * * *
2970916 TCGGGCATGTGCTGGTGCCGCAGTTTTCTTTGCCAGGGCACCAACGTCGAAACATCCCCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* ** * * * * * *
2970981 CCTAACCGGTGGCATT-GGTGTTCCGATGATCGAGGGAG-CAGGGGGTGTGTGCACATTATGTGC
131 CCTGACCGACGGCATTAGG-GTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
2971044 AATGGGTGCTGGTA-TTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
2971108 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
2971173 GCGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTAGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
2971238 GCAAGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAGTCCTTCTGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
*** ** * *
2971303 TTTTAAAAAATTATGAACCGCAAAAAGTTGCAAAAATCATGAAAATTAGAAAATGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
2971368 CCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA-CAGATAAAAATGGCA
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC-CATAAAAATGGCA
** * * * *
2971432 TTGGCACACAGAAATATGATGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGGTTACG
584 TTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
2971497 CATCCCGTCTCTCTGGCCGGCATAGT--------GCCCG-CCGCCCGCTCGTTTCGTCGATTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* *
2971553 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGGGGGTT
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
2971604 ACGACAGCTC
Statistics
Matches: 3063, Mismatches: 354, Indels: 78
0.88 0.10 0.02
Matches are distributed among these distances:
866 69 0.02
867 5 0.00
874 3 0.00
875 528 0.17
876 34 0.01
877 4 0.00
879 1 0.00
880 1 0.00
886 1 0.00
888 1 0.00
897 1 0.00
898 1 0.00
900 5 0.00
901 664 0.22
902 670 0.22
903 380 0.12
904 79 0.03
905 1 0.00
907 9 0.00
908 146 0.05
909 301 0.10
910 41 0.01
911 118 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
CCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAAGATCGG
CAGCACACAGAGGGGGACCCAACCAATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:2969978 original size:26 final size:26
Alignment explanation
Indices: 2969949--2970001 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2969939 GTTGACTTAG
2969949 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2969975 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2970001 G
1 G
2970002 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2971259 original size:875 final size:879
Alignment explanation
Indices: 2967143--2971595 Score: 5730
Period size: 901 Copynumber: 5.0 Consensus size: 879
2967133 GATCAGACCA
* * * * * * *
2967143 AGGGTTGTGGCAGCAGGATCGGTAGCACGTAGAGGGCGACTCGACCGATCCCCGACTTGCGCATA
1 AGGGTTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
* * * *
2967208 CCACCCCTATGGCAGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
66 CCGCCCCTCTGGCAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * *
2967273 CATTCCTAGTCTAAG-AT-C-G-GA-C-TGGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGG
131 CATTCCCAGTCTAAGCATACAGAGATCACGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * ** * *
2967332 CATGTGCTGGTGCCGTATTTTTTTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGA
196 CATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * * * *
2967397 TCGGTGACGTTGGGGTTCCAACGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
261 CCGGCGGCATT-GGGTTCCGACGATC-GAGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGG
*
2967462 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCGCT
323 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
2967527 TAAAGAGTATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
388 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
2967592 CTTTTTTCAAATGGTCACAAAATCTTGTACCCTTCGAGTTTTTGGCTGAATTGTTTTATGCATGC
453 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* *
2967657 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAA
518 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* *
2967722 AAAATCCCGAACCGCAAAAAGTTTTGAAAATCATG-AAAATAAAAAACGAGTCGTCTTGCCATGA
583 AAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
2967786 AACTTCACGTGAACG-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAG
648 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAA
* * * * * *
2967850 GTAGAAATAGGAAGAAGTCCCTAAAGCCACCTACCACCCTATCGATCCACGGCTTCCGCATCCCG
713 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
**
2967915 TCTCTCTGGCCGGCACAGTGCCCGCCCGCCCGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGG
778 TCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCT----CGCCCGCTCGTTTCGTCGGTTGG
2967980 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
835 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-G
* * * *
2968026 AGGGTTGCGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGATTGTGCATC
1 AGGGTTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
** *
2968091 ATGCCCCTCTGGCAGGCTGAGCG-CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
66 CCGCCCCTCTGGCAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
2968155 CATTCCCAGTCTAAGCATACAGAGTTTATTCTCAGTCTAAGATCGAACCAGACCGAGGGTTGCGG
131 CATTCCCAGTCTAAGCATACAGAG---------A-TC----A-CG-----GACCGAGGGTTGCGG
* * * *
2968220 TAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGTGGG
176 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGG
* * * *
2968285 AGCATAGCCGGAGAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGAGGTGT
241 AGCATCGCCGGAGAACCTGACCGGCGGCATT-GGGTTCCGACGATC-GAGGGG-CGGGG-GGTGT
* * * *
2968350 GCGCACATGATGTGCAATGGGTGCTGGTACTTTGCCCATATATTGGCCCCCTAACCCTCATCAAA
302 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * * * * *
2968415 CCTTGAGAGCTCACACCCCCTTAAAGAGCATTTGTGATTTTACAAGTTTGCTGCCAGGAGCCAAT
367 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
2968480 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTA
432 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
2968545 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
497 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* *
2968610 CTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAATTCATGAAAAATAGA
562 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGA
* *
2968675 AAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAG
627 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* *
2968740 CCATAAAAATGGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCG
692 CCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * * *
2968805 ATTCACGTCATGCGCATCCCGTCTCTCTGGCAGACGTAGTGCCCGCCCGCCTGCTCGCCCGCTCG
757 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCCGCTCG
* *
2968870 TTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCG
822 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CG
* ** * * * * * * * * *
2968929 AGGGTTACAATAGCAAGATCGATAGCACACAAATGGGGACCCAACCAATCCCCAGCTTGCACATC
1 AGGGTTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
* * *
2968994 CCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTT
66 CCGCCCCTCTGGCAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* *
2969059 TATTCCCAATCTAAGCATACAGAGTTCTTTCCCAGTCTAAGATCGGCCTGACCGAGGGTTGCGGC
131 CATTCCCAGTCTAAGCATACAGAG---------A-TC----A-C-G---GACCGAGGGTTGCGGC
* * ** * *
2969124 AGCACATGCTAGGCTCAGGCATGTGCTGGTGCCAAATTTTTCTTCGCCGGGGCACCATCATTGGA
177 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGA
* * * * * *
2969189 GCATCGTCGGAGAACCTGACTGGCGGTATTAGGGTTCTGGCGATCGGGGGGGCTGGGGGGTGTGC
242 GCATCGCCGGAGAACCTGACCGGCGGCATT-GGGTTCCGACGATC-GAGGGGC-GGGGGGTGTGC
* *
2969254 GCACATGATGTGCGATGGGCGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACC
304 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
2969319 TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
369 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
**
2969384 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAAGTTTTTAGC
434 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
2969449 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAAT
499 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
** * * * * * *
2969514 CCTTTTGAAAATATTTTAAAAAATCCCGAACTGCACAAAGTTTCAAAAATCAGGAAAAATGGAAA
564 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAA
**** * *
2969579 ACGAGTCGTCCCATCATGAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCC
629 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
2969644 ATAAAAATGGCATTGGCATGCAGAAATAAT-AAGATGTGCCTAAACCCACCTACCA-CTTGACCG
694 ATAAAAATGGCATTGGCAAGCAGAAAT-ATGAAGATGTGCCTAAACCCACCTACCACCCT-ATCG
* * * * * * * * *
2969707 ATCCATGGCTTGCGTATCCAGTCTCTCTGGCCGGTGCAGTTCCCACCCGCCCACCCGCCCGCTCG
757 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCCGCTCG
2969772 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGACTG
822 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGAC-G
* * ** * * *
2969831 AGGGTTGTGGTAGCAGGATCGGCAGCACATAGAGGGGGACCC-AGTCGAACCCCAGCTTGCGCAT
1 AGGGTTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCAT
* * * *
2969895 CTCACCCCTCTGGCTGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
65 CCCGCCCCTCTGGCAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* *
2969960 TCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCAAGGGTTGCG
130 TCATTCCCAGTCTAAGC------A--T-A----CAG----AGATC--A-CGGACCGAGGGTTGCG
* * * *
2970025 GCAGCACATGCTAGGCTCGGGCATGTGCTGGTGTCACTTTTTTCTTCGCCGGGGCACCATCGTCG
175 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCG
* * *
2970090 GAGCATCACCGAAGAACCTGACCGACGGCATTAGGGTTCCGACGATCG-GGGGCCGGGGGGTGTG
240 GAGCATCGCCGGAGAACCTGACCGGCGGCATT-GGGTTCCGACGATCGAGGGG-CGGGGGGTGTG
*
2970154 CGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
303 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * *
2970219 CTTGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTA
368 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
2970284 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACTCTTTGAGTTTTTAG
433 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * *
2970349 CTGAATTTTTTTGTGCATGCCAACAGAAATACAAGGATCATGTCTGCCAAGTTTGGCGCCAAAAC
498 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * * *
2970414 TCGTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATTATGAAAAATAGAA
563 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAA
2970479 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
628 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
2970544 CATAAAAATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
693 CATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* *
2970609 TCCACGGGTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGCTCGCCCGCTCGT
758 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGT
* *
2970674 GTCGTCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCAGATCG
823 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CG
* ** *
2970732 AGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCCCATC
1 AGGGTTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
* * * *
2970797 CCGCCCCTTTGGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGTTTGACTTAGGCATACGGAGTT
66 CCGCCCCTCTGGCAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
2970862 CATTCCCAGTCTAAG-AT-C-G-GA-C-CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
131 CATTCCCAGTCTAAGCATACAGAGATCACGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * * * * * *
2970921 CATGTGCTGGTGCCGCAGTTTTCTTTGCCAGGGCACCAACGTCGAAACATCCCCGGAGAACCTAA
196 CATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * * * * *
2970986 CCGGTGGCATTGGTGTTCCGATGATCGAGGGAGCAGGGGGTGTGTGCACATTATGTGCAATGGGT
261 CCGGCGGCATTGG-GTTCCGACGATCGAGGG-GCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
2971051 GCTGGTA-TTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCAAGAACTCACACCCCCTT
324 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
2971115 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGCGACAC
389 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
2971180 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTAGTGCAAGCC
454 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
2971245 AAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAGTCCTTCTGAAAAAATTTTAAA
519 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
*** ** * * *
2971310 AAATTATGAACCGCAAAAAGTTGCAAAAATCATGAAAATTAGAAAATGAGTCGTCTTGCCATTAA
584 AAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
2971375 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA-CAGATAAAAATGGCATTGGCAC
649 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC-CATAAAAATGGCATTGGCA-
* * * *
2971439 A-CAGAAATATGATGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGGTTACGCATCCC
712 AGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* *
2971503 GTCTCTCTGGCCGGCATAGT--------GCCCGC-CGCCCGCTCGTTTCGTCGATTGGCTTAGGC
777 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
*
2971559 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
842 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
2971596 CGGGGGTTAC
Statistics
Matches: 3160, Mismatches: 344, Indels: 150
0.86 0.09 0.04
Matches are distributed among these distances:
865 1 0.00
866 62 0.02
867 6 0.00
874 3 0.00
875 530 0.17
876 38 0.01
877 1 0.00
879 1 0.00
880 2 0.00
882 55 0.02
883 76 0.02
884 1 0.00
885 2 0.00
886 2 0.00
892 1 0.00
894 1 0.00
895 1 0.00
897 1 0.00
900 2 0.00
901 668 0.21
902 646 0.20
903 375 0.12
904 78 0.02
905 1 0.00
906 1 0.00
907 17 0.01
908 119 0.04
909 302 0.10
910 43 0.01
911 119 0.04
915 3 0.00
919 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (879 bp):
AGGGTTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
CCGCCCCTCTGGCAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
CATTCCCAGTCTAAGCATACAGAGATCACGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
CATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
CCGGCGGCATTGGGTTCCGACGATCGAGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
ATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACG
Found at i:2972190 original size:708 final size:709
Alignment explanation
Indices: 2970818--2972299 Score: 2152
Period size: 708 Copynumber: 2.1 Consensus size: 709
2970808 GCCGGCTGAG
* * * * *
2970818 CGCCCGCACGCCCGTTTCGTGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
1 CGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * **
2970883 CCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAGTTTTCTTTG
66 CCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACAGTTTTCTTCA
* ** * *
2970948 CCAGGGCACCAACGTCGAAACATCCCCGGAGAACCTAACCGGTGGCATTGGTGTTCCGATGATCG
131 CCAGGGCACCAACGGCGAAACATCCCCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCG
* *
2971013 AGGGAGCAGGGGGTGTGTGCACATTATGTGCAATGGGTGCTGGTATTGGCCCTTATATTGGCCCC
196 AGGGAGCAGGGGGTGTGTGCACATGATGTGCAATGGGTGCTGGTATTGGCCCTTATATTAGCCCC
* *
2971078 CTATCCCTCATCGAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
261 CTATCCCTCATCAAACCTCAAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
2971143 CTGCCAGTAGCCATTAAAATGTCTGAAATGGCGACACTTTTTTCAAATGGTCACAAAATCTTGTA
326 CTGCCAGTAGCCATTAAAATGTCTGAAATGGCGACACTTTTTTCAAATGGTCACAAAATCTTGTA
*
2971208 CACTTCGAGTTTTTAGCTGAATTTTTTAGTGCAAGCCAAAAAAAATACAAGGATCACATCTACCA
391 CACTTCGAGTTTTTAGCTGAATTTTTTACTGCAAGCCAAAAAAAATACAAGGATCACATCTACCA
* * * * *
2971273 AGTTTGGGGCCAAAAGTCCTTCTGAAAAAATTTTAAAAAATTATGAACCGCAAAAAGTTGCAAAA
456 AGTTTGGGGCAAAAACTCCTTCTAAAAAAATTTTAAAAAATCACGAACCGCAAAAAGTTGCAAAA
* *
2971338 ATCATGAAAATTAGAAAATGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATT
521 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATT
* * *
2971403 GTATGAATTTACAACAGATAAAAATGGCATTGGCACACAGAAATATGATGATGTGCCTAAACCCA
586 GTATGAATTTACAACACATAAAAATGGCATTGGCACACAGAAATAGGAAGATGTGCCTAAACCCA
* * *
2971468 CCTACCATCCTATCGATCCACGGGTTACGCATCCCGTCTCTCTGGCCGGCATAGT-GCC
651 CCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTAGCCGGCATAGTCGCC
2971526 CG-CCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
1 CGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * *
2971590 CCAGACCGGGGGTTACGACAGCTCATGTTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCA
66 CCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACAGTTTTCTTCA
* * * * * ** * * *
2971655 TCGGGGCACCATCGGCGGAGCATTGCCGGAGAACCTGATCGACGGTATTGGGGTTCCGACGATCG
131 CCAGGGCACCAACGGCGAAACATCCCCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCG
* * *
2971720 -GGGGGCCGGGGG-GTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGC
196 AGGGAGCAGGGGGTGTGT--GCACATGATGTGCAATGGGTGCTGGTA-TTGGCCCTTATATTAGC
* *
2971783 CCCCTATCCCTCATCAAACCTCGAGAACACACACCCCTTTAAAGAGCATTTGAGATTTTACAGGT
258 CCCCTATCCCTCATCAAACCTCAAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * * *
2971848 TTGCTGTCAGTAGCCATTAAAGTGTCTGACATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
323 TTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGCGACACTTTTTTCAAATGGTCACAAAATCTT
* * * *
2971913 GTACGCTTCGATTTTTTAGCTGAATTTTTTTCTGCACA-CCAAAAAAAATACAAGGATCACGTCT
388 GTACACTTCGAGTTTTTAGCTGAATTTTTTACTGCA-AGCCAAAAAAAATACAAGGATCACATCT
* * * *
2971977 ACCAAGTTTGGGGCAAAAACT-CTTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
452 ACCAAGTTTGGGGCAAAAACTCCTTCT-AAAAAAATTTTAAAAAATCACGAACCGCAAAAAGTTG
*
2972041 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGG-TTGAAGGG
516 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTT-AAGGG
* **
2972105 ACCATTGTATGAATTTACAAGC-CATAAAAATGGTATTGGCACGTAGAAATAGGAAGATGTGCCT
580 ACCATTGTATGAATTTACAA-CACATAAAAATGGCATTGGCACACAGAAATAGGAAGATGTGCCT
*
2972169 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCATAGTGCC
644 AAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTAGCCGGCATAGT---
2972234 CGCC
706 CGCC
* * *
2972238 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCACGGTCTAAGATC
1 CGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
2972300 AGATCAGGCT
Statistics
Matches: 688, Mismatches: 74, Indels: 19
0.88 0.09 0.02
Matches are distributed among these distances:
705 4 0.01
706 10 0.01
707 192 0.28
708 419 0.61
709 2 0.00
712 5 0.01
713 56 0.08
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (709 bp):
CGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
CCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACAGTTTTCTTCA
CCAGGGCACCAACGGCGAAACATCCCCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCG
AGGGAGCAGGGGGTGTGTGCACATGATGTGCAATGGGTGCTGGTATTGGCCCTTATATTAGCCCC
CTATCCCTCATCAAACCTCAAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAATGTCTGAAATGGCGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCGAGTTTTTAGCTGAATTTTTTACTGCAAGCCAAAAAAAATACAAGGATCACATCTACCA
AGTTTGGGGCAAAAACTCCTTCTAAAAAAATTTTAAAAAATCACGAACCGCAAAAAGTTGCAAAA
ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAACACATAAAAATGGCATTGGCACACAGAAATAGGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTAGCCGGCATAGTCGCC
Found at i:2972465 original size:26 final size:26
Alignment explanation
Indices: 2972425--2972479 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
2972415 GTGGGTTGAC
2972425 CTAGGCATACGGAGTTCATTCCCAGT
1 CTAGGCATACGGAGTTCATTCCCAGT
*
2972451 CTAGGCATACTGAGTTCATTCCCAGT
1 CTAGGCATACGGAGTTCATTCCCAGT
2972477 CTA
1 CTA
2972480 AGATCAGACT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (26 bp):
CTAGGCATACGGAGTTCATTCCCAGT
Found at i:2973835 original size:718 final size:709
Alignment explanation
Indices: 2972452--2973938 Score: 2192
Period size: 718 Copynumber: 2.1 Consensus size: 709
2972442 ATTCCCAGTC
* ** * * * *
2972452 TAGGCATACTGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTACGATAGCACATACT
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTTGCAACAGCACATACT
*
2972517 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGGACCATCACCAGAGCATCGCCGG
65 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCGCCGG
* * * * *
2972582 AGAACTTGACCGACGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
130 AGAACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGGCCGCGGGGTGTGCGAAAATGATG
* ** * *
2972647 TGCGATGGGTGCTGGTACTTGTTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACAC
195 TGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCAAGAACAC
* * *
2972712 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
260 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTATAAA
* *
2972777 ATGGGGACACTTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTT
325 ATGGGGACACTTTTCTAAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTGTTT
**
2972842 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTTGAAA
390 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAA
* *
2972907 AAATTTTAAAAAATCCCAAATCGCAAAAAGTTTCAAAAATCGTGCAAAATAGAAAACGAGTCGTC
455 AAATTTTAAAAAATCCCAAATCGCAAAAAATTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
2972972 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGA
520 TTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGA
** * * *
2973037 CATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
585 CATTGGCACACAGAAATATAAAGATGTGCCTAAAACCACCTACCACCCGATCGATCCACGGCTTG
*
2973102 CGCATCCCATCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCACCCGCCCACTCGTTTCATCGGTGG
650 CGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCG----CCCG----CTCGTTTCATCGGTGG
2973167 GCT
707 GCT
* * * * *
2973170 TAGGCATACGGAGTTCATTGCCAGTCTAACATCGTACCAGACCGAGGGTTGCCACAGCTCATGCT
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCG-ACCAGACCGAGGGTTGCAACAGCACATACT
* * * * *
2973235 GGGCTAC-GGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATTGCCG
65 GGGCT-CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCGCCG
* *
2973299 GAGAACCTGACCGGCGGTATTGGGGTTCCAACGATC-GGGGGGCCGACGGGGTGTGCGAAAATGA
129 GAGAACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGGCCG-CGGGGTGTGCGAAAATGA
2973363 TGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCAAGAAC
193 TGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCAAGAAC
* *
2973428 ACACCCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTACCAGTAGCCATTAAAGTGTATA
258 ACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTATA
* * *
2973493 AAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGAATTTT
323 AAATGGGGACACTTTTCTAAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTGT
* *
2973558 TTTGTGCATGCCAACAAAGATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCTTTCCGA
388 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGA
* *
2973623 AAAAATTTTAAAAAATCCCGAA-CGTTAAAAAATTTCAAAAATCGTGAAAAATAGAAAACGAGTC
453 AAAAATTTTAAAAAATCCCAAATCG-CAAAAAATTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * *
2973687 GTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTAGAAGTCATAAAAA
517 GTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
2973752 TGGCGTTGGCACACAGAAATA-ATATGATGTGCCTAAAACCACCTACCAGCCGATCGATCCACGG
582 TGACATTGGCACACAGAAATATA-AAGATGTGCCTAAAACCACCTACCACCCGATCGATCCACGG
* * * *
2973816 CTTGTGCAT-CCAGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
646 CTTGCGCATCCCA-TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTGGGCT
*
2973880 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAACAGCA
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTTGCAACAGCA
2973939 GGATCGGCAG
Statistics
Matches: 692, Mismatches: 70, Indels: 22
0.88 0.09 0.03
Matches are distributed among these distances:
710 69 0.10
711 1 0.00
714 4 0.01
717 16 0.02
718 601 0.87
719 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (709 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGACCAGACCGAGGGTTGCAACAGCACATACTG
GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCGCCGGA
GAACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGGCCGCGGGGTGTGCGAAAATGATGT
GCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCAAGAACACA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTATAAAA
TGGGGACACTTTTCTAAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTGTTTT
GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAA
AATTTTAAAAAATCCCAAATCGCAAAAAATTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
TGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAC
ATTGGCACACAGAAATATAAAGATGTGCCTAAAACCACCTACCACCCGATCGATCCACGGCTTGC
GCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTGGGCT
Found at i:2975877 original size:26 final size:26
Alignment explanation
Indices: 2975840--2975892 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2975830 TTTGACTTAG
*
2975840 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2975866 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2975892 G
1 G
2975893 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2977664 original size:26 final size:26
Alignment explanation
Indices: 2977635--2977687 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2977625 GTTGACTTAG
2977635 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
2977661 GCATGCGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2977687 G
1 G
2977688 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2978026 original size:899 final size:897
Alignment explanation
Indices: 2973173--2978322 Score: 7083
Period size: 895 Copynumber: 5.7 Consensus size: 897
2973163 GTGGGCTTAG
* * * ** *
2973173 GCATACGGAGTTCATTGCCAGTCTAACATCGTACCAGACCGAGGGTTGCCACAGCTCATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
2973238 CT-ACGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATTGCCGGAG
66 CTCA-GGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
** * ** * *
2973302 AACCTGACCGGCGGTATTGGGGTTCCAACGATC-GGGGGGCCGACGGGGTGTGCGAAAATGATGT
130 AACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * *
2973366 GCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCAAGAACACA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
2973431 CCCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTACCAGTAGCCATTAAAGTGTATAAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
* * *
2973496 TGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
2973561 GTGCATGCCAACAAAGATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCTTTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
*
2973626 AATTTTAAAAAATCCCGAA-CGTTAAAAAATTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
455 AATTTTAAAAAATCCCGAACCG-TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * * *
2973690 TTGCCACGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTAGAAGTCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * *
2973755 CGTTGGCACACAGAAATAAT-ATGATGTGCCTAAAACCACCTACCAGCCGATCGATCCACGGCTT
584 CATTGGCACGCAGAAAT-ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
2973819 GTGCATCCAGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCG--CTCGTTTCGTCGGTTGGCTTA
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCTCGTTTCGTCGGTTGGCTTA
* ** * * *
2973882 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAACAGCAGGATCGGC
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATTGGT
* * * *
2973947 AGCATGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
778 AGCACGCAGAGGGGGACCCGACCGATCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
2974012 CCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
842 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
* * * * ** *
2974068 GCATACGGTGTTCATTCCCAGTCAAAGATCGGATCAGACCAAGGGTTATGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
2974133 CTCGGGCATGTGCTGGTGTCACTTTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCAGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
** * **
2974198 ACCTGACCAACGACATTAGGGTTCCGACGATCGGGGGGGGCC-GGGGGGTGTGCGCATTTGATGT
131 ACCTGACCGGCGACATTGGGGTTCCGACGATC-GGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
2974262 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
2974327 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
2974392 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
2974457 GTGCATGCCAACAAAAATACAAGGATCACGCCTACCAATTTTAGGGCAAAAAATCCTTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
2974522 AATTTTAAAAAATCTCGAACCGTAAAATGTTTCGAAAATCGTGAAAAAGAGAAAATGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
2974587 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
2974652 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGGTTAC
585 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * ** *
2974717 GCGTCCCGTCTCTCTGGCCTGCGTAGTGCCTGCCAGCTTGCCCGCCAGCTCGTTTCGTTGGTTGG
650 GCATCCCGTCTCTCTGGCCGGCGTAGTG-C--CCA-CCCGCCCGCC--CTCGTTTCGTCGGTTGG
* * * * * * *
2974782 CTTAGGCATACGGAGTTCATTCCCTGTCTAAGATTGGATCAAACTGAGGGTTGTGGCAGCAGGAT
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGAT
*** * * * * *
2974847 TTACAGTACGCAGAGGGGGACCCGACCAATCCCTAACTTGCGCATCCCACCCCTCTGGACGGCTG
774 TGGTAGCACGCAGAGGGGGACCCGACCGATCCC-GACTTGCGCATCCCGCCCCTCTGGCCGGCTG
** * *
2974912 AGCGCATGCACGCTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCAAA
838 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
* * *
2974972 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGCTTGCGGTAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
2975037 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCATCATCGTCGGAGCATCGCCGGAGA
66 CTCAGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
2975102 ACCTGACCGACGGCATTGGGGTTCCGACGATCTGGGGGGTCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
2975167 TGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
2975232 ACCCCCTT-AAGCAGCATTTGAGATTTTACAGGTTTG-TGCTAGTAGCCATTAAAGTGTCTGAAA
261 ACCCCCTTAAAG-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
*
2975295 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG-ATTCTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTT
* * * * * * *
2975359 TGTGCATGCCAATAGAAACACAAGGATCATGTCCACCAAGTTTGGGGCAAAAACTCCTTCTGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* ** * *
2975424 AAAGTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTC
454 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
2975489 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
2975554 CATTGGCATGTAGAAATATGAAGATGTACCTTAACCCACCTACCACCCTATCGATCCACGGCTTG
584 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
2975619 CGCATCCCGT-TGCTCTAGCCAGCGTAGTGCCCGCCCGCCCG--CTCATTTCATCGGTTGGCTTA
649 CGCATCCCGTCT-CTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCTCGTTTCGTCGGTTGGCTTA
* * * * * * *
2975681 GGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGATCAAGGGTTGCGGTACCAAGATCGGT
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATTGGT
* * * * * * * *
2975746 AGTATGCAGAGGGGGACCCGTCCGATCCGCG-GTTGCGCATCCTGCCCCTTTGGCTGGCTAAGCG
778 AGCACGCAGAGGGGGACCCGACCGATCC-CGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * *
2975810 CTCGCACGCTCATTTCGTGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
* ** * * *
2975866 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACAGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * * * * *
2975931 CTCAGACATGTGTTGGAGTCGTATTTTTCTTCATCGGGGCACCATCCTTGGAGCATAGTCGGAGA
66 CTCAGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
2975996 ACCTGACCGGCGGCATAGGGGTTCCGACGATCGGGGGGGCTGAGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGT
* *
2976061 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAATCCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
2976126 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
*
2976191 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-A------A---G---TTTTTA
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * ** *
2976243 GTGCATGCCAAAAAAAATACAAGGATCATGTCTATAAAGTTTGGGGCCAAAACTCATTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
2976308 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTCAAAAATAGAAAATGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
2976373 TGCCATGAAACTTCACGTGAAAGCTT-AAGAGACCATTGTATGAATCTACAAGCCATAAAAATGG
520 TGCCATGAAACTTCACGTGAAGGCTTAAAG-GACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
2976437 CATTGGCACGCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
584 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
2976502 CGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCTCGCTCGCCCGCCCATCCGCTCGTTTCGTCG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTG-CC-CAC-C-CGCCCG-----CC-CTCGTTTCGTCG
* * * ** *
2976567 GTTGGCTTAGGCATATGGAGTTAATTCCCAGTCTAAGATCTGACTGGACCGAGGGTTAC-GCAGC
704 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGC
* * * *
2976631 ATGATTGGTAGCACGCAGAGGGGGACCC-AGCCTATCCCCGGCTTGCGCATCCCGCCCCACTGGC
769 AAGATTGGTAGCACGCAGAGGGGGACCCGA-CCGAT-CCCGACTTGCGCATCCCGCCCCTCTGGC
* * *
2976695 CAGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTA
832 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTA
2976760 A
897 A
* * * * *
2976761 GCATGCGGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGATTGCGGCAGCAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
2976826 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCATCATCGTCGGAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * ** * *
2976891 ACCTGACCAGCGATATTGGGGTTCCAACGATCGGGCAGGCCGGGGAGGTGTGCGCACATGATGTA
131 ACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
2976956 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
2977021 ACCCCCTGAAAGAGCATTTGAGGTTTTACAGGTTTGGTGCCAGTAGCCATTAAAGTGTCTAGAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* *
2977086 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTGTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
2977151 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAA
* *
2977215 AATTTTCAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAGAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
2977280 TGCCATGAAACTTCACCTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCGTAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
2977345 AATGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
585 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
2977410 GCATCTCGTCTCTCTGGCTGGCGTATTGCCCACCCGCCCGTCCACTCGTTTCGTCGGTTGGCTTA
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCG-CC-CTCGTTTCGTCGGTTGGCTTA
** * * * * *
2977475 GGCATACGGAGTTCATTCAAAGTCTAAGATCAGATCAGACCAAGGGTTGTGGCAACAAGATTGGT
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATTGGT
* *
2977540 AGCACGCAGAGGGGGACCCGACCGATCCTCGACTTGCGCATCTCGCCCCTCTGGCCGACTGAGCG
778 AGCACGCAGAGGGGGACCCGACCGATCC-CGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * *
2977605 CCCGTACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
842 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
* * * ** * *
2977661 GCATGCGGAGTTCATTCCCAATCTAAGATTGGACCAGACAAAGGGTTGTC-CCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG-CGGCAGCACATGCTGG
*
2977725 GCTCAGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAG
65 GCTCAGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* *
2977790 AACCTGACCGGCGACGTTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCACACATGATGT
130 AACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * *
2977854 GTGATGGGTGCTGGTGCTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
2977919 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
* *
2977984 TGGGGACACTTTTTTGAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
2978049 GTGCATGCCAACAACAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAATTCCTTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
*
2978114 AATTTTAGAAAATCCCGAACC-TCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
455 AATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
** * * *
2978178 TCACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
2978243 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
584 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
2978308 CGCATCCCGTCTCTC
649 CGCATCCCGTCTCTC
2978323 CACCCACCCG
Statistics
Matches: 3760, Mismatches: 435, Indels: 116
0.87 0.10 0.03
Matches are distributed among these distances:
882 2 0.00
883 262 0.07
884 4 0.00
885 2 0.00
886 2 0.00
887 6 0.00
889 1 0.00
894 439 0.12
895 628 0.17
896 519 0.14
897 11 0.00
898 1 0.00
899 531 0.14
900 270 0.07
901 2 0.00
902 5 0.00
903 362 0.10
904 441 0.12
905 3 0.00
906 4 0.00
907 262 0.07
908 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATTGGTAGC
ACGCAGAGGGGGACCCGACCGATCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
Found at i:2978388 original size:26 final size:26
Alignment explanation
Indices: 2978359--2978411 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2978349 GCTGGCTTAG
* *
2978359 GCATACATAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
2978385 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
2978411 G
1 G
2978412 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:2978997 original size:724 final size:721
Alignment explanation
Indices: 2977630--2979801 Score: 2983
Period size: 724 Copynumber: 3.0 Consensus size: 721
2977620 CGTTGGTTGA
* **
2977630 CTTAGGCATACGGAGTTCATTCCCAATCTAAGCATGCGGAGTTCATTCCCAATCTAAGATTGGAC
1 CTTAGGCATAC--AGTTCATTCCC-ATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGAC
* * ** *
2977695 CAGACAAAGGGTTGTC-CCAGCACATGCTAGGCTCAGGCATGTGCTGGTG-TCACATTTTTCTTC
63 CAGACCAAGGGTT-ACGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCT-ACATTTTTCTTC
*
2977758 GTCGGGGCACCATCGTCGGAGCATCG-CTGGAGAACCTGACCGGCGACGTTGGGGTTCCGACGAT
126 GTCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTGACC-GCGGCGTTGGGGTTCCGACGAT
* * * *
2977822 CGGGGGGCCGGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTGCTTGGGCCTTATATTGG
189 CGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
**
2977887 CCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
253 CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * * *
2977952 TTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTGAAATGGTCAAAAAATCT
318 TTTGCTGCCAGTAGCCATTAAAGTGTCTAGAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
2978017 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAACAATACAAGGATCACGTCT
383 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAACAATACAAGGATCACGTCT
* * *
2978082 ACCATGTTTGGGGCCAAAATTCCTTCCGAAAAAATTTTAGAAAATCCCGAACCTCAAAAAGTTTC
448 ACCATGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCTCAAAAAGTTTC
*
2978147 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTCACCATGAAACTTCACATGAAGGCTTAAGGGAC
513 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTCACCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
2978212 CATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAA
578 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAA
*
2978277 CCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTC-C-AC-CCA-CCCGCCCGC
643 CCCACCTACCACCCTATCGATCCAC-GCTTGCGCATCCCGTCTCTCGCGACGACAGCCCGCCCGC
* * * * * *
2978338 TCGTTCGGTCGGCTGG
707 CCG-CCCGCCCGCTCG
*
2978354 CTTAGGCATACATAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGAC
1 CTTAGGCATAC--AGTTCATTCCCA-TCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGAC
* * * *
2978419 CAGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCTTGTGCTGGTGCTGCATTTTTCTTCGT
63 CAGACCAAGGGTTACGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTACATTTTTCTTCGT
* * *
2978484 CAGGGCACCATCGCCCGAGCATCGTCGGAGAACCTGACCTGCGGCGTTGGGGTTCCGACGATCGG
128 CGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC-GCGGCGTTGGGGTTCCGACGATCGG
*
2978549 AGGGGCCGGGGGGTGTTCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
192 -GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
2978614 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTGAAAGAGCATTTGAGGTTTTACAGGTTT
256 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
2978679 GGTTCCAGTAGCCATTAAAGTGTCTAGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
321 GCTGCCAGTAGCCATTAAAGTGTCTAGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
2978744 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAACAATACAAGGATCACGTCTACC
386 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAACAATACAAGGATCACGTCTACC
*
2978809 ATGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCTCAAAAAGTTTCAAA
451 ATGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCTCAAAAAGTTTCAAA
* * *
2978874 AATCATGAAAAATAGAAAACGAGTCGTCTCACCATGAAACTTTACGTAAAGGCTTAAGGGACCAT
516 AATCGTGAAAAATAGAAAACGAGTCGTCTCACCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
2978939 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCC
581 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCC
* * *
2979004 ACCTACCACCCTATCGATCCACGACTTGTGCATCCCGTCTCTCTGGTCGGCGTAGAGCCCGCCCG
646 ACCTACCACCCTATCGATCCACG-CTTGCGCATCCCGTCTCTC--G-CGACG-ACAGCCCGCCCG
2979069 CCCGCCCGCCCGCTCG
706 CCCGCCCGCCCGCTCG
* ** * * * *
2979085 -TT-----T-C-G-TCGGTTGGC-T-TAGGCATATGGAGTTCATTCCCAGTCTAACATCAGACC-
1 CTTAGGCATACAGTTC-ATTCCCATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCA
* * * * * *
2979138 GAACCAAGGGTTGCGGTAGCACATGCTTGGCACGGG-ATGTGTTGGTGCCACATTTTTCTTCATC
65 G-ACCAAGGGTTACGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTACATTTTTCTTCGTC
* * * * * **
2979202 GGGGCACCATCTTTGGAGCATCGTTGGAGAACCTGACCGACGGCATTGGGGTTCTGGTGATCGGG
129 GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCG-CGGCGTTGGGGTTCCGACGATCGGG
** *
2979267 GTGGCCGGGGGGCATGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
193 G-GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
2979332 CTATCCCTGATCAAACCTTCAA-AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
257 CTATCCCTCATCAAACC-TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
2979396 GCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACA-TGTTTTTCAAATTGG-CACAAAATCT
321 GCTGCCAGTAGCCATTAAAGTGTCTAG-AATGGGGACACT-TTTTTCAAA-TGGTCACAAAATCT
* * * ** * *
2979458 TGTACACTTTGAGCTTTTAGCTGAATTTTTTTGTGCATGACAACAGTAATACAAGGATCATGCCT
383 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAACAATACAAGGATCACGTCT
* *
2979523 ACCAAGTTTGGGGCCGAAACTCCTT-TCGAAAAAATTTTAAAAAATCCCGAACCAT-AAAAAGTT
448 ACCATGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCCCGAACC-TCAAAAAGTT
** * **
2979586 TTGAAAATCGTGCAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
511 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTCACCATGAAACTTCACGTGAAGGCTTAAGGG
*
2979651 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTA
576 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
* * **
2979716 AACCCACCTACCACCCTATCGATCCACGGCTTGCGAATCCCATCTCTCTGGTCGACGTAGTGCCC
641 AACCCACCTACCACCCTATCGATCCAC-GCTTGCGCATCCCGTCTCTC--G-CGACG-ACAGCCC
* *
2979781 GCCCGCACGCCCGCCCCCTCG
701 GCCCGCCCGCCCGCCCGCTCG
2979802 TTTCGTCAGT
Statistics
Matches: 1307, Mismatches: 116, Indels: 57
0.88 0.08 0.04
Matches are distributed among these distances:
716 6 0.00
717 555 0.42
718 72 0.06
719 1 0.00
720 2 0.00
721 4 0.00
723 3 0.00
724 632 0.48
725 9 0.01
728 1 0.00
729 1 0.00
730 2 0.00
731 8 0.01
732 11 0.01
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (721 bp):
CTTAGGCATACAGTTCATTCCCATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAG
ACCAAGGGTTACGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTACATTTTTCTTCGTCGG
GGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGCGGCGTTGGGGTTCCGACGATCGGGGGG
CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTAGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAACAATACAAGGATCACGTCTACCATGTT
TGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCTCAAAAAGTTTCAAAAATCG
TGAAAAATAGAAAACGAGTCGTCTCACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGCTTGCGCATCCCGTCTCTCGCGACGACAGCCCGCCCGCCCGCCCGCC
CGCTCG
Found at i:2979545 original size:717 final size:713
Alignment explanation
Indices: 2977661--2979869 Score: 3055
Period size: 717 Copynumber: 3.1 Consensus size: 713
2977651 CCCAATCTAA
* * * ** * * **
2977661 GCATGCGGAGTTCATTCCCAATCTAAGATTGGACCAGACAAAGGGTTGTC-CCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAACATCAGACCAGACCAAGGGTT-ACGGTAGCACATGCTAG
* * *
2977725 GCTCAGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAG
65 GCTC-GGGATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTTGGAG
* *
2977790 AACCTGACCGGCGACGTTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCACACATGATGTG
129 AACCTGACC-GCGGCGTTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * * * *
2977855 TGATGGGTGCTGGTGCTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTCAAAACTCAC
*
2977920 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAAT
* *
2977985 GGGGACACTTTTTTGAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
2978050 TGCATGCCAACAACAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAATTCCTTCCGAAAAA
386 TGCATGCCAACAACAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAA
*
2978115 ATTTTAGAAAATCCCGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTC
451 ATTTTAAAAAATCCCGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTC
* *
2978180 ACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCA
516 ACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
2978245 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-AGCTTGC
581 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA-CTTGC
** * * * * * *
2978309 GCATCCCGTCTCTC----C-AC--CCA-CCCGCCCGCTCGTTCGGTCGGCTGGCTTAGGCATACA
645 GCATCCCGTCTCTCTGGTCGACGTAGAGCCCGCCCGCACG-CCCGCCCGCTCG-TT-----T-C-
* ** *
2978366 TAGTTCATTCCCAGTCTAA
701 --G-TCGTTGGC--T-TAG
* * * * *
2978385 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAACATCAGACCAGACCAAGGGTTACGGTAGCACATGCTAGG
* ** * * * *
2978450 CTCGGGCTTGTGCTGGTGCTGCATTTTTCTTCGTCAGGGCACCATCGCCCGAGCATCGTCGGAGA
66 CTCGGG-ATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTTGGAGA
*
2978515 ACCTGACCTGCGGCGTTGGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTTCGCACATGATGTGC
130 ACCTGACC-GCGGCGTTGGGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTGC
2978580 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCAAGAACTCAC
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTCAA-AACTCAC
* * * *
2978644 ACCCCCTGAAAGAGCATTTGAGGTTTTACAGGTTTGGTTCCAGTAGCCATTAAAGTGTCTAGAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA-AAT
2978709 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
2978774 TGCATGCCAACAACAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAA
386 TGCATGCCAACAACAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAA
* *
2978839 ATTTTAAAAAATCTCGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTC
451 ATTTTAAAAAATCCCGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTC
* *
2978904 ACCATGAAACTTTACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
516 ACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
2978969 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGTG
581 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
* *
2979034 CATCCCGTCTCTCTGGTCGGCGTAGAGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
646 CATCCCGTCTCTCTGGTCGACGTAGAGCCCGCCCGCACGCCCGCCCGCTCGTTTCGTC-GTTGGC
2979099 TTAG
710 TTAG
* * *
2979103 GCATATGGAGTTCATTCCCAGTCTAACATCAGACC-GAACCAAGGGTTGCGGTAGCACATGCTTG
1 GCATACGGAGTTCATTCCCAGTCTAACATCAGACCAG-ACCAAGGGTTACGGTAGCACATGCTAG
* * * * *
2979167 GCACGGGATGTGTTGGTGCCACATTTTTCTTCATCGGGGCACCATCTTTGGAGCATCGTTGGAGA
65 GCTCGGGATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTTGGAGA
* * ** ** *
2979232 ACCTGACCGACGGCATTGGGGTTCTGGTGATCGGGGTGGCCGGGGGGCATGCGCACATGATATGC
130 ACCTGACCG-CGGCGTTGGGGTTCCGACGATCGGGG-GGCCGGGGGGTGTGCGCACATGATGTGC
*
2979297 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTGATCAAACCTTCAAAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTCAAAACTCACA
2979362 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATG
* *
2979427 GGGACA-TGTTTTTCAAATTGG-CACAAAATCTTGTACACTTTGAGCTTTTAGCTGAATTTTTTT
322 GGGACACT-TTTTTCAAA-TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** * * * *
2979490 GTGCATGACAACAGTAATACAAGGATCATGCCTACCAAGTTTGGGGCCGAAACTCCTT-TCGAAA
385 GTGCATGCCAACAACAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCT-GAAA
** *
2979554 AAATTTTAAAAAATCCCGAACCAT-AAAAAGTTTTGAAAATCGTGCAAAATAGAAAACGAGTCGT
449 AAATTTTAAAAAATCCCGAACC-TCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
**
2979618 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
513 CTCACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
2979683 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
578 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
* * * *
2979748 GCGAATCCCATCTCTCTGGTCGACGTAGTGCCCGCCCGCACGCCCGCCCCCTCGTTTCGTCAGTT
643 GCGCATCCCGTCTCTCTGGTCGACGTAGAGCCCGCCCGCACGCCCGCCCGCTCGTTTCGTC-GTT
2979813 GGCTTAG
707 GGCTTAG
* ** *
2979820 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACG
1 GCATACGGAGTTCATTCCCAGTCTAACATCAGACCAGACCAAGGGTTACG
2979870 ACAGCAGGAT
Statistics
Matches: 1335, Mismatches: 125, Indels: 57
0.88 0.08 0.04
Matches are distributed among these distances:
716 5 0.00
717 615 0.46
718 73 0.05
719 1 0.00
720 2 0.00
721 4 0.00
723 6 0.00
724 598 0.45
725 8 0.01
728 1 0.00
729 1 0.00
730 2 0.00
731 8 0.01
732 11 0.01
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (713 bp):
GCATACGGAGTTCATTCCCAGTCTAACATCAGACCAGACCAAGGGTTACGGTAGCACATGCTAGG
CTCGGGATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTTGGAGAA
CCTGACCGCGGCGTTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTCAAAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAACAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT
AAAAAATCCCGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTCACCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCC
CGTCTCTCTGGTCGACGTAGAGCCCGCCCGCACGCCCGCCCGCTCGTTTCGTCGTTGGCTTAG
Found at i:2980015 original size:26 final size:26
Alignment explanation
Indices: 2979979--2980031 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2979969 GTTGACTTAG
* *
2979979 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAATCTAA
2980005 GCATACGGAGTCCATTCCCAATCTAA
1 GCATACGGAGTCCATTCCCAATCTAA
2980031 G
1 G
2980032 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAATCTAA
Found at i:2982265 original size:711 final size:703
Alignment explanation
Indices: 2980913--2982355 Score: 2062
Period size: 710 Copynumber: 2.0 Consensus size: 703
2980903 TAAGCATATA
* *
2980913 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTCGGCTCGGGC
* * * *
2980978 ATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCACCGGAGAACCCGATCGACGGCCTCG
66 ATGTGCTGGTGCCACAATTTTCTACGCCGGGGCACCATCACCGGAGAACCCGACCGACGGCCTAG
* * * *
2981043 AGATTCTGACGATCAGGGGGTCGGGGGGTGTGTGCACATGATATGCGATGGGTGCTGGTACTTGG
131 AGATTCCGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACCTGG
* * * * *
2981108 CTCTTATATTGGCCCCCTATGCCTCATGAAACCATGAGAACTCATAGCCCCTTAAAGAGCATTTG
196 CCCTCATATTGGCCCCCTATCCCTCATCAAACCATGAGAACTCATACCCCCTTAAAGAGCATTTG
* *
2981173 AGATTTTACAAGCTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAATTG
261 AGATTTTACAAGCTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
* *
2981238 GTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
326 GTCACAAAATCATGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATCCCAAAAAAAATACA
* * * **
2981303 AGGATCATGTCTACCAAAATTGGGGCCAAAAATCCTTTTGAAAAAATTTTAAAAAATCCCGAACC
391 AGGATCACGTCTACAAAAATTGAGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
* * *
2981368 TTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACAAGTCGTCTTGCCAGGAAACTTCACGTGAT
456 GTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACAAGTCGTCTTGCCAGGAAACTTCACGTGAA
*
2981433 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAA
521 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
* *
2981498 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGA
586 GATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
*
2981563 CGTA-G-CGCCCACCCG-CCAG-CT-C-GTTTCGTTGGTTGGCTTAGGCATACG
651 CGTAGGCCGCCCACCCGTCC-GCCTGCTGTTTCGTCGGTTGGCTTAGGCATACG
* ** *
2981611 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTCGGCTCGGGT
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTCGGCTCGGGC
** * *
2981676 ATGTGCTGGTGCCGTAATTTTCTACGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
66 ATGTGCTGGTGCCACAATTTTCTACGCCGGGG---CA----C----CATCACCGGAGAACCCGAC
* * * ** *
2981741 CGACTGCATTAG-GGTTCCGGTGATC-GGAGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGG
120 CGACGGC-CTAGAGATTCCGACGATCAGG-GGGCCG-GGGGGTGTGCGCACATGATATGCGATGG
2981804 GTGCTGGTACCTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCATACCCC
182 GTGCTGGTACCTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCAT-GAGAACTCATACCCC
* * *
2981868 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
246 CTTAAAGAGCATTTGAGATTTTACAAGCTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGA
*
2981933 CACTTTTTTCAAATGGTCACAAAATCATGTACACTTTGAGTTTTTAGCTGATTTTTTTTGTGCAT
311 CACTTTTTTCAAATGGTCACAAAATCATGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAT
*
2981998 CCCAAAAAAAATACAAGGATCACGTCTA-AAAAAGTTTGAGGCCAAAACTCCTTCCGAAAAAATT
376 CCCAAAAAAAATACAAGGATCACGTCTACAAAAA--TTGAGGCCAAAAATCCTTCCGAAAAAATT
* * * *
2982062 TTCAAAAATCTTC-AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
439 TTAAAAAATC-CCGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACAAGTCGTCTTGC
*
2982126 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
503 CAGGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
**
2982191 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTGCGCA
568 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTGCGCA
* *
2982256 TCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGTCCGCCTGCTTGTTTCGTCGGTTGGCTT
633 TCCCGTCTCTCTGGCCGACGTAG-G-CCGCCCACCCGTCCGCCTGC-TGTTTCGTCGGTTGGCTT
2982321 AGGCATACG
695 AGGCATACG
* *
2982330 AAGTTCATTCCTAGTCTAAGATCAGA
1 GAGTTCATTCCCAGTCTAAGATCAGA
2982356 TTGGATCGAG
Statistics
Matches: 656, Mismatches: 62, Indels: 33
0.87 0.08 0.04
Matches are distributed among these distances:
698 86 0.13
701 2 0.00
705 1 0.00
708 2 0.00
709 42 0.06
710 233 0.36
711 225 0.34
712 1 0.00
713 1 0.00
715 10 0.02
716 4 0.01
717 1 0.00
719 48 0.07
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26
Consensus pattern (703 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTCGGCTCGGGC
ATGTGCTGGTGCCACAATTTTCTACGCCGGGGCACCATCACCGGAGAACCCGACCGACGGCCTAG
AGATTCCGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACCTGG
CCCTCATATTGGCCCCCTATCCCTCATCAAACCATGAGAACTCATACCCCCTTAAAGAGCATTTG
AGATTTTACAAGCTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCATGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATCCCAAAAAAAATACA
AGGATCACGTCTACAAAAATTGAGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
GTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACAAGTCGTCTTGCCAGGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
GATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
CGTAGGCCGCCCACCCGTCCGCCTGCTGTTTCGTCGGTTGGCTTAGGCATACG
Found at i:2982520 original size:26 final size:26
Alignment explanation
Indices: 2982484--2982535 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
2982474 TGACTTAGGC
* *
2982484 ATACGGAGTTCGTTCCGAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
2982510 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
2982536 TTGGATCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:2983907 original size:718 final size:712
Alignment explanation
Indices: 2982510--2983991 Score: 2188
Period size: 718 Copynumber: 2.1 Consensus size: 712
2982500 GAGTCTAAGA
* ***
2982510 ATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGATTGAGGGTTGGGACAGCACATGCTAGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTACAACAGCACATGCTAGGCT
* * *
2982575 CGAGTATGTGCTAGTGCCTCATTTTTCTTCGCCGGAGCACCATCGCCGGAGCATCACCAGAGAAC
66 CGAGCATGTGCTAGTGCCTCATTTTTCTTCACCGGAGCACCATCGCCAGAGCATCACCAGAGAAC
** *
2982640 CTGACCGGTAGCATTAGGGTTCTAGCGATCGGGGGGGCCAGGGGGTGTGCGCAAATGCTATGCGA
131 CTGACCGACAGCATTAGGGTTCTAGCGATCGGGGGGGCCAGGGGGTGTGCGCAAATGATATGCGA
* * * *
2982705 TGGGTGTTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCACACC
196 TGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
2982770 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTACCAGTAGCCATTAAAGTATCTGAAATGGG
*
2982835 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTGTTTTTTTGC
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTGTTTTTTTGC
* * *
2982900 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
391 ATGCCAAAAAAAATACAAGGATAACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * *
2982965 TTAAAAAATCTCGAACAGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTACC
456 TTAAAAAATCTCGAACAGTAAAAACTTCTAAAAATCGTGAAAAATAGAAAACGA--CGTCTTACC
* * * * *
2983030 ATGAAACTTCACGTGAAGGCTTAAGGTACCATTGTATGAATTTACAACCCATAAAAATGGCATTG
519 ATGAAACTTCACGTGAAGGCTTAAGGGACCACTATATGAATTTACAACCCATAAAAATAGAATTG
* *
2983095 GCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
584 GCATGCAAAAATACGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
*
2983160 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCTGCTCATTTCATCGGTTGGCTTA
649 CCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGT---CC-GCTCATTTCATCGGTTGGCTTA
**
2983225 GGC
710 CCC
* * * * *
2983228 ATACGGAGTTCATTCCTAGTCTAAGATTGGATCGGACCGAGGGTTACAACGGCATATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTACAACAGCACATGCTAGGCT
* * * * *
2983293 CGGGCATGTGCTGGTG-CTACATTTTTCTTCATC-GAGGCACCATCGCCAGAGCATCGCCGGAGA
66 CGAGCATGTGCTAGTGCCT-CATTTTTCTTCACCGGA-GCACCATCGCCAGAGCATCACCAGAGA
* * * * * * * *
2983356 ACTTGATCGACGGCATT-GGGATT-TCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
129 ACCTGACCGACAGCATTAGGG-TTCT-AGCGATCGGGGGGGCC-AGGGGGTGTGCGCAAATGATA
2983419 TGCGATGGGTGCTGCTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTC
191 TGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
2983483 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAG-CATTAAAGTATCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTACCAGTAGCCATTAAAGTATCTGAA
2983547 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATT-TTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTGTTTT
* *
2983611 TTGTGCATGCCAAAAAAAATACAGGGATAACATCTACCGAGTTTGGGGCCAAAACTCCTTCCGAA
386 TT-TGCATGCCAAAAAAAATACAAGGATAACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* ** *
2983676 AAAATTTTCAAAAATCTCGAACCTTAAAAACTTCTAAAAATCGTGAAAAGTAGAAAACGA-GTCT
450 AAAATTTTAAAAAATCTCGAACAGTAAAAACTTCTAAAAATCGTGAAAAATAGAAAACGACGTCT
* *
2983740 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTATATGAATTTACAAGCCATAAAAATAGA
515 TACCATGAAACTTCACGTGAAGGCTTAAGGGACCACTATATGAATTTACAACCCATAAAAATAGA
*
2983805 ATTGGCATGCCAAAATACGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGC
580 ATTGGCATGCAAAAATACGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
2983870 GCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGTCCGCTCATTTCGTCGGTTGGCTTA
645 GCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGTCCGCTCATTTCATCGGTTGGCTTA
2983935 CCC
710 CCC
* * * * * *
2983938 ATACGGAATTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCAGCAGCA
1 ATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTACAACAGCA
2983992 AGATCGACAG
Statistics
Matches: 687, Mismatches: 71, Indels: 20
0.88 0.09 0.03
Matches are distributed among these distances:
710 67 0.10
711 2 0.00
714 164 0.24
716 6 0.01
717 192 0.28
718 208 0.30
719 48 0.07
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (712 bp):
ATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTACAACAGCACATGCTAGGCT
CGAGCATGTGCTAGTGCCTCATTTTTCTTCACCGGAGCACCATCGCCAGAGCATCACCAGAGAAC
CTGACCGACAGCATTAGGGTTCTAGCGATCGGGGGGGCCAGGGGGTGTGCGCAAATGATATGCGA
TGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTACCAGTAGCCATTAAAGTATCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTGTTTTTTTGC
ATGCCAAAAAAAATACAAGGATAACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCTCGAACAGTAAAAACTTCTAAAAATCGTGAAAAATAGAAAACGACGTCTTACCAT
GAAACTTCACGTGAAGGCTTAAGGGACCACTATATGAATTTACAACCCATAAAAATAGAATTGGC
ATGCAAAAATACGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGTCCGCTCATTTCATCGGTTGGCTTACCC
Found at i:2984125 original size:26 final size:26
Alignment explanation
Indices: 2984095--2984147 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2984085 CTTGACTTAG
2984095 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2984121 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2984147 G
1 G
2984148 ATCAGGTCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2985899 original size:26 final size:26
Alignment explanation
Indices: 2985870--2985920 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2985860 TAACTGCGGC
*
2985870 ATACGGAGTTCATTCCCAGTCTAAGT
1 ATACAGAGTTCATTCCCAGTCTAAGT
2985896 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
2985921 ATCGAATTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:2986795 original size:26 final size:26
Alignment explanation
Indices: 2986758--2986810 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2986748 GTTGACTTAG
*
2986758 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
2986784 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
2986810 G
1 G
2986811 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:2987475 original size:12 final size:12
Alignment explanation
Indices: 2987458--2987482 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2987448 CTAGCATAGT
2987458 GCCCGCCCGCTC
1 GCCCGCCCGCTC
2987470 GCCCGCCCGCTC
1 GCCCGCCCGCTC
2987482 G
1 G
2987483 TTTCGTCGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.64, G:0.28, T:0.08
Consensus pattern (12 bp):
GCCCGCCCGCTC
Found at i:2987696 original size:26 final size:26
Alignment explanation
Indices: 2987660--2987712 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2987650 GTTGACTTAG
2987660 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2987686 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2987712 G
1 G
2987713 ATCGAATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2988962 original size:878 final size:883
Alignment explanation
Indices: 2983203--2997632 Score: 13805
Period size: 878 Copynumber: 16.1 Consensus size: 883
2983193 CCGTCCGCCT
* * * * * *
2983203 GCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAG-AT--TG-G-AT-CG
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTATCCA
* * * * * * *
2983262 GACCGAGGGTTACAACGGCATATGCTGGGCTCGGGCATGTGCTGGTGCTACATTTTTCTTCATCG
66 GACCAAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC-GCATTTTTCTTCGTCG
* * * * * * * * * *
2983327 AGGCACCATCGCCAGAGCATCGCCGGAGAACTTGATCGACGGCATTGGGATTTCGGTGATCGGGG
130 GGGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGG
*
2983392 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGG-CCC
195 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
2983456 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
260 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
2983521 CTACCAGTAG-CATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
325 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * * *
2983585 CACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATACAGGGATAACATCTACCG
390 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* * *
2983650 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTCAAAAATCTCGAACCTTAAAAA-CTTCTAAA
455 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTC-AAA
* *
2983714 AATCGTGAAAAGTAGAAAACGA---GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAC
519 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * * *
2983776 TATATGAATTTACAAGCCATAAAAATAGAATTGGCATGCCA-AAATACGAAGATGTGCCAAAACC
584 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG-CAGAAATATGAAGATGTGCCTAAACC
* *
2983840 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCC
648 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCC
* ** *
2983905 GCCCG---T-CCGCTCATTTCGTCGGTTGGCTTACCCATACGGAATTCATTCCCAGTCTAAGATC
713 GCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * * **
2983966 GGACCAGATCGAGGGTTGCAGCAGCAAGATCGACAGCACACAGAAGGGGACCCGAAC-AAACCTC
778 GGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCT-
* * * * *
2984030 GGCTTACGCATCCCGCCCCTCTGGCTGACTGAGTGCCTGCAC
842 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
**
2984072 GCTCGTTTCATGTCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG-T-A-T
* * * * *
2984137 CCCAGTCTAAGATCAGGTCGGACCGAGTGTTACGACAGCACATGGTGGGCTCGGGCATTTGCTGG
63 -CCAGACCAAG----GGT---------TG-CA-G-CAGCACATGCTGGGCTCGGGCATGTGCTGG
* *
2984202 TGCCGCATTTTTCTTCGTCGAGGCACCATCGGCGGAGCATCACC-AGAGAACCTGACC-AGCGGC
111 TG-CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGA-AGAACCTGACCGA-CGGC
*
2984265 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTCGGGGAGGTGTGCGCACATGATGTGCGATGG
173 ATTGGGGTTCCGGCGATCGGGGGGGCC-----G--GGGG-GGTGTGCGCACATGATGTGCGATGG
* * * *
2984330 GTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTCACCCCCCC
230 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
2984395 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAA-TAGTCTGAAATGGAGA
295 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT-GTCTGAAATGGGGA
* * * *
2984459 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTTTTTGGCTGATTTTTTTTGTGCAA
359 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
*
2984524 GCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
424 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * * *
2984589 AAAAAAATCTCAAACCGCAAAAGGTTTCAAAAATCATGAAAAATTGAAAACGAGTCGTCTTGCCA
489 -AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* * * * *
2984654 TGAATCTTCACGTTAAGGCTTAAGGAACCATTGTGTGAATTTACAAGCCATAAAAATGGTATTGG
553 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*** *
2984719 CACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATT
618 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
*
2984784 CCGTCTCTCTGGCCGGCGTA--G--T----GCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAG
683 CCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * * * *
2984841 GCATACGGAGTTCATTACCAGTCTAAGATTGGATCGGATCAAGGGTTGTGGTAGTAGGATTGGCA
748 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCA
* * * * * * * * *
2984906 GCACGTAGAAGGGGACCTGACTGATCCCCGGCTTTCGCATCTCGCTCCTCTGGCCGGTTGAGCGC
813 GCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
2984971 TCGTAC
878 CCGCAC
* * * *
2984977 GCTCATTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAATCTAAG-AT-C--AG-A-CCA
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTATCCA
* * * * * ** ** *
2985036 GACCGAGGGTTTCGGCAGCATATACTGGGCTCGATCATGCACTGGTGCTGTATTTTTCTT-GATC
66 GACCAAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC-GCATTTTTCTTCG-TC
* * * ** * * * *
2985100 AGGACACCATCGTCGAAGCATTGCCGGAGAACCTGACC-AGCGGTATTGGGGTTTCAGCGATCGG
129 GGGGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGA-CGGCATTGGGGTTCCGGCGATCGG
** * * *
2985164 GGGGGCC-ATGGGGTGTGCGCACATGATGTGCAAAGGGTGCTGGTACTTTGCCCTTATATTGGCC
193 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
2985228 CCCTACCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
258 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * * *
2985293 TGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGAACACGTATTTCAAATGGTCACAAAATCTTG
323 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * * *
2985358 TACACTTCAAGTTTTTAGCTGAAATGTTTTGTGCCTGCCAACAAAAATACAAGGATCACGTCTAC
388 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
* * * * **
2985423 CAAGTTTGGGGCGAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGT-AAAAGTTTTGA
453 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAA
* *
2985487 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGTAGGCTTAAGGGACCA
518 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *
2985552 GTGTATGAATTTACAAGCCATAAAAATGGCATCGGCATGCAGAAATATGAAGATGTGCCTAAACC
583 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * * * **
2985617 CACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTTTGACTGATGTA--G--TGCCC
648 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCC
* * *
2985678 GCCCG----CCCACTCGTTT-GCTCAGATGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
713 GCCCGCCCTCCCGCTCGTTTCG-TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * *** * *
2985738 CAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGTAGCACACAGAGAAAGACCCAACTGATCCCT
777 CGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCT
* * * *
2985803 GGCTTGCGCATCTCGCCCCTCTGGCTGGCTGAGCGTCCGTAC
842 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * ** * *
2985845 GCTCATTTCGTGGGTTAACTGCGGCATACGGAGTTCATTCCCAGTCTAAGTATACAGAGTTCATT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG-T-A-T
*
2985910 CCCAGTCTAAGATCGAATTAGATCAAGGGTTAC-GACAGCACATGCTGGGCTCGGGCATGTGCTG
63 --C---C--AGA-C---------CAAGGGTTGCAG-CAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * ** * *
2985974 GTGCCACATTTTTCTTCGCCAGGGCACCATCGTTGGAGCATCGTC-AGAGAACCTGACCGGCAGC
110 GTG-CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGA-AGAACCTGACCGACGGC
** * * *
2986038 ATTGGGGTTCCAACGATC-GGGGGGCC-GGGGGGTGTGCGCCCATGATTTGTGATGGGTGCTGGT
173 ATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
2986101 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACCCCCCCTTAAAGGG
238 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * *
2986166 CATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGAGTCTGAAATGGGGAGACTTTTTT
303 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
2986231 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCAAGCC-AAAAA
368 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* ** *
2986295 AATACAAGGATCATGTCTACCAAGTTTGGATCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATC
433 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATC
* * * * *
2986360 TCAAACCGTAAAAGGTTTCGAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTC
497 TCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * ***
2986425 ACGTTAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGTATTGGCACATAGAA
562 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* * * *
2986490 ATATGGAGATGTGCCTAAACCCACCTACCATCCTATCGATCCATGGCTTGCGCATTCCGTCTCTC
627 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* *
2986555 TGACCGGCGTA--G--T----ACCCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
692 TGGCCGGCGTAGTGCCTGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * *
2986608 GTTCATTCCCAGTCTAAGATCAGACC-GAACTGAGGGTTGTGGCAGCAGGATCGGGAGCATGCAG
757 GTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAG
* * * * * * * * *
2986672 AGGGGGACTCGGCCAATCCTTCGCTTGCGCATCCCGCCCCTCTGGCTGACAGAGCACCCGCAC
821 AGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
2986735 GTTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG-----T
*
2986800 CCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT-GGGCATGTGCTGG
61 ----ATC------CAGACC--A---AGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * **
2986864 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACTTGACCGGGGGCAT
111 TG-CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGACGGCAT
* *
2986929 TGGGGTTTCGGTGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
175 TGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * * *
2986993 TTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCAAGAACTCGCACCCCCCTAAAGAGCA
240 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
2987058 TTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
305 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * *** *
2987123 AATGGTCACAAAATCTTGTACACTTCGAATTTTTAACTGAATTTTTTTGTGCATGTGGATAAAAA
370 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* * * *
2987188 TACAAGGATCACGTATACCAAATTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCA
435 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCG
2987253 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
500 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * *
2987318 TGAAGGCTTAAGGTACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGTAGAAATA
565 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
** * * * *
2987383 TGAAGATGCACCTAAACCCACCTACCACCCTTTCAATCCATGGCTTGCGCATCCCGTCTCTCTGA
630 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
** * * * * *
2987448 CTAGCATAGTGCCCGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGCCATACGGAGTT
695 CCGGCGTAGTGCCTGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * * *
2987513 CATTCCCAGTCTAAGATCGGATCGGATCGAGGTTTGCGGTAGTAGGATCGGCAGCACGTAGAAGG
760 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGG
* * * *
2987578 GGACCCGACTGATCCCTGGCTTGGGCATCTCGCCCCTCTGGCCGGCTGAGCGCTCGCAC
825 GGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
*
2987637 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG-T-A-T
** * * * *
2987702 CCCAGTCTAAGATCGAATCGGATCGAGGGTTGTGGCAACACATGCTGCGCTCAGGCATGTGTTGG
63 --C---C--AGA-C----C--A---AGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGG
*
2987767 TGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAACATCACC-AGAGAACCTGACCGACGGCA
111 TG-CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGA-AGAACCTGACCGACGGCA
*** *
2987831 TTGGGGTTCTAACGATCGGGGGGGTC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
174 TTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
2987895 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATACCCCCTTAAAGAGC
239 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
2987960 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
304 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
** *
2988025 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTACGCATGCCAAGAAAA
369 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
* ** *
2988090 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTTGAAAAGATTTTAAAAAATC-C
434 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC
* * * * *
2988154 TGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGGAAACTAGTCGTCTTGCCATTAAACTTCA
499 -GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
2988219 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
563 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* ** * *
2988284 TATGATGATGCACCTAAACCCACCTACCACCATATCGATCCATGGCTTGCGCATCCCGTCTCTCT
628 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
*
2988349 GGCCGACGTAGTGCCTGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
693 GGCCGGCGTAGTGCCTGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* *** * *
2988414 TTCATTCCCAATCTAAGATTAAACCAGACCGAGGGTTGCGGCAGTAGGATTGGTAGCACGCA-AG
758 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGA-
* * *
2988478 GGGGGACCCGACCGATCCCAGGCTTGCTCATCCCGCCCCTCTGGCAGGCTGAGCGCCCGCAC
822 GGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
*
2988540 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTACG-AT-C-G-G-A-CCA
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTATCCA
* *
2988599 GACCAAGGGTTGCAGCAGCAGATGCTGGGCTCGAGCATGTGCTGGTGCGACATTTTTCTTCGTCG
66 GACCAAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCG-CATTTTTCTTCGTCG
** * * * *
2988664 GGGCACCATCACCGGAGCATCACCGAAGAACTTGATCGACGGCATTAGGGTTCCGGTGATCGGGG
130 GGGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGG
* **
2988729 TGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTCACCCTTATATTGGCCCC
195 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * * *
2988794 CTATCCCTCATCAAACCTTGAGATCTCACACCCCTTTAAAGAGCATTTGAGAATTTACAGGTTTG
260 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
2988859 TTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTA
325 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * *
2988924 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATAAAAGGATCACATCTATCA
390 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* * *
2988989 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTCAAAAAATCTTGAACCATAAAAAGTTTCAAAA
455 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAA
* * ***
2989054 ATTGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAATATTTAAGGGACCATT
520 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * * * *
2989119 GTATGAATTTACAGGACATAAAAATGACACTGGCATGCAAAAATATGAAGATGTGCCTAAACCCA
585 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * *
2989184 CCTACCACTCTATCGATCCACGGCTTGCGCATCACATCTCTCTGGCCGGCGTAGTGCCTGCCCAC
650 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGC
* * * * *
2989249 CCGCCCTCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAAAATTGG
715 CCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * * * *
2989314 ACCGGACAGAGGGTTGTGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCGCC-GG
780 ACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC-CCTGG
* * ** *
2989378 CTTGCTCATCCCGTCTTTCTGGCCGGCTGAGCGCCCGCAT
844 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
*
2989418 GCTCGTTTCAT-GGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAGT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-G-G---AG-
* ** * * * * * ** * *** *
2989482 CTAAGATCAGACCGGACCAAGAATTGCGGTAGCAGGATCGGTAGCACGCAGAGAGGGACCCGACC
60 -T---AT----CCAGACCAAGGGTTGCAGCAGCA-CAT-GCT-G--GGC-TCG-GGCATGTG-CT
* * ** * * * * * * * * **
2989547 GATCCCCGGC-TTGGTCATCCCGTCGCTTTGGCTGGCTGAGCGCCTGCACGC-TCATTTCGTTG-
109 GGT--GC-GCATTTTTC-T-TCGTCG---GGGC--AC-CATCGTC-GGA-GCATCA--CCGAAGA
** ** * * * * *** * ** ** *
2989609 -GTTGACTTA-GGCATACGGAGTTCATTCCCAGTCTAT-GATTGGACCAGACCAAGGATTTTGGC
159 ACCTGACCGACGGCAT-TGG-G---GTT-CC-GGCGATCGGGGGGGCC-G---GGGGGGTGT-GC
* * * *** ** * ** * *
2989671 AGCACATGCTGGGCTCA-GGCATGTGCTGGTGCGACATT-TTTCTT-CGTCGGGGCACTATCACT
212 -GCACATGATGTGC-GATGG---GTGCTGGT---AC-TTGGCCCTTATATTGGCCCCCTATCCCT
* * * * ** * ** * * * **
2989733 GGAGC-ATCGC-CGGAGAACCTGACCAGCGGCATT---G-GGGTTCCGGCGA--TCA-AGGGGGT
268 -CATCAAAC-CTC-GAGAA-CTCA-CA-CCCCCTTAAAGAGCATT--TGAGATTTTACA-GGTTT
* * * * * * ** ** * * ** **
2989789 G-TGCACA-CACGACGTGTGATGGGTGCTGGTATTTGG-CCCTTATATTGGCCCCCTATCCCTCA
324 GCTGC-CAGTA-GCCAT-TAAAGTGT-CTGAAATGGGGACACTT-T-TT----TCAAAT-GGTCA
* * * * **
2989851 TC-AAACCTTG-AGA-TCTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAG
378 -CAAAATCTTGTACACT-TC-GA---GTTT--TTAGC---TGA-ATTTT-----TTTG-TG-CA-
** * * * * ** * *
2989913 TAGCC-ATTAAAGTGTCTGAAATGGGGA-CACTTTTTTCAA--AT-GGTCACAAAATCTTGTACA
423 T-GCCAAAAAAAAT-AC---AA---GGATCACGTCTACCAAGTTTGGGGC-CAAAA-C---T-C-
* ** * **
2989973 CTT-CGAGTTTTTAACTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
473 CTTCCGA------AA---AA----ATT-T---T----A-AAAAAT-C-TCGAAC-CG--TAAAAA
**
2990037 GTTTGGGGCCAAAACACCTTTCGAAAAAATTTAAAAAAATCTCGAATCGTAAAAATTTTTTTAAA
511 GTTT-----CAAAA-A----TCGTGAA---------AAA--T---A--G--------------AA
* *
2990102 AATCGTGAAAAATAAAAAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAAT
536 AA-C----------------GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
2990167 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
584 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * *
2990232 ACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCTGCCCG
649 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCG
* * * * *
2990297 CCCG-CCT---GCTTGTTTGGTCGGATGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGATCA
714 CCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * * * * * * *
2990358 AACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGAAGAGGACCCGATCGATCCCCGA
779 GACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGG
* * * *
2990423 CTTGCGTATCCCACCCCTCTAGCCGGCTGAGTGCCCGCAC
844 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
2990463 ACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG-T-A-T
* * * *
2990528 CCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCAGCACATGCTGGGC-AGGGCATGTACTGG
63 --C---C----A--G-ACC--A---AGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* ** ** * * * *
2990592 TGCTGCATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCGTCGGAGAACTTGACAGGCGGCAT
111 TGC-GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGACGGCAT
* *
2990657 TGGGGTTTCGGCGAT---------CAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
175 TGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
2990713 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCA
240 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * *
2990778 TTTGAGATCTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCA
305 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * *
2990843 AATGGCCACAAAATCTTGTACACTTCGAATTTTTAGCTCAA-TTTTTTGTGAATGCCAAAAAAAA
370 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* * *
2990907 TGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCA
435 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCG
* *
2990972 AACAGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACG
500 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * * **
2991037 TGAAGGTTTAAGGGGCCAGTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCACACAGAAATA
565 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* *
2991101 TGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGG
630 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * *
2991166 CCAGCGTAGTGCCCT-CCTGCCCG----CCCGCTCGTTTTGTCGATTGGCTTAGGCATACGGAGT
695 CCGGCGTAGTG-CCTGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * *
2991226 TCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGTAGGATCGGTAGCACGCAGAGG
759 TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGG
* * * *
2991291 GGGACCCGGCTGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCG-CTGCAC
824 GGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
2991350 GCTCGTTTCGTGGGTTGA-TTGAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCAT
1 GCTCGTTTCATGGGTTGACTT-AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG-T-A-
* * * * * *
2991414 TCCTAATCTAAGATCGGACCGGACCGAGGGTTACGGCAGTAGATGTTCGGCTCGGGCATGTGCTG
62 T-C----C----A---GACC--A---AGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * * *
2991479 GTGCCACATTTTTCTTCGTCGGGGCACCATC-ACTGAAGCATCACTGGAGAACCTGACCGACAGC
110 GTG-CGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCACCGAAGAACCTGACCGACGGC
* * * *
2991543 TTTGGGGTTTCGGTGATCGGGGGGGCC-GGGGGGTGTGCGCGCATGATGTGCGATGGGTGCTGGT
173 ATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
2991607 ACTTGG-CC--A-A--------CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
238 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
2991660 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
303 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
2991725 CAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
368 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* * * * *
2991790 AGTACAAGGATCACGTCTTCCAAGTTTGGAGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATGC
433 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-C
* ** * *
2991855 -CGAACCATAAAAAGTTTGGAAATTCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTC
497 TCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
2991919 ACGTGGAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAA
562 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* * *
2991984 ATATGAAGATGTGCCTAAACTCACCTACCATCCTATCGATCCACGGCTTGCGTATCCCGTCTCTC
627 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * *
2992049 TGGCCGGCGTAGTTCCCGCCCGCCCGCGCACCCGCCCATTCGTTTCGTCGGTTGGCTTAGGCATA
692 TGGCCGGCGTAGTGCCTGCCCGCCCGCCCTCCCG--C--TCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * * **
2992114 CGGAGTTCATTCTCAGTCTAAGATTGGATC-GAACAGAGGTTTGCGGCAGCAGGATCGATAGCAC
753 CGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGTAGGATCGGCAGCAC
* *** * * * * * **
2992178 GTAGAGGGGGACCCGGTTGATCCCCGACTCGTGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCAT
817 GCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
2992243 AC
882 AC
* *
2992245 GCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCCAG---AAG-AT-C-GA--A-CCG
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTATCCA
** * *
2992301 GACTGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTCCGCATTTTCCTTCGTCGG
66 GACCAAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCGCATTTTTCTTCGTCGG
* * ** * ** * *
2992366 GGCACCATCGCCAGAGCATCGTCGCAGAACCTGACCGGTGGAATTGGGGTTTCGGCGATCGGGGG
131 GGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGG
* * * * * *
2992431 TG-CTGGGGGGTGTGCACACATGATGTACGATGGGTGCTGGCACCTGGCCCTTATATTGGCCCCC
196 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
2992495 TATCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
261 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * * *
2992559 TGCCAGTGGCCATTAAACTGTCTGAAATGGGGATACTTTTTGCAAATGGTCACAAAATCTTGTAC
326 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * * *
2992624 ACTTTGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCATGTCTACGAA
391 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* **
2992689 GTTTGGGGCCAAAACTCCTT-CGAAAAAAATTTAAAAAAATC-CTGAACCGTAAAAAGTTTTGAA
456 GTTTGGGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAA
* * * *
2992752 AATCGTGAAAAATAAAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCAT
519 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * ** *
2992817 TGTATCAACTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCTTAAACCC
584 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
** * * * * *
2992882 ACCTACTGCCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGTCGACGTAGTCCCTG-ACG
649 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCG
* ** * * *
2992946 CCCG-CCT---GCTTGTTTAATTGGATGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTG
714 CCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * * **
2993007 GATCAAACCAAGGGTTGCGGCTGCAGGATCGGCAGCACGCAGAGGGGGACCTGGTCGAT-CCTCG
779 GACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCT-G
* * *
2993071 GCTTACGCATCCCGCCCTTTTGGCCGGCTGAGCGCCCGCAC
843 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
**
2993112 GCTAATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGACTTCATT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG-----A--
* * *
2993177 CCTAGTCTAAGATCAGACCGGACCGAGGGTTGC-GACAGCACATGCTGGGCTCAGGCATGTGCCG
59 -GTA-TC------CAGACC--A---AGGGTTGCAG-CAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * *
2993241 GTGCCGTATTTTTCTTCGCCGGGGCACCATCGTC---G-------G-AGAACCTGACCGGCGACT
110 GTG-CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGACGGCA
* * * * *
2993295 TTGGGGTTTCGACTATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGCTA
174 TTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
2993360 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
239 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
2993425 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
304 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
2993490 AAATCGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
369 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
* * * *
2993555 ATACGAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTT-CTAAAGGAATTTTAAAAAATC-
434 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA-AAATTTTAAAAAATCT
2993618 CTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
498 C-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
*
2993683 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACCAGCCATAAAAATGGCATTGGCATGCAGAA
562 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* * * * * *
2993748 ACATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATTCACAGCTTACGCATACCGTCTCTC
627 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
*
2993813 TGGTCGGCGT-G-G--TGCCCGCCCG--CT--CG-T--TTT-GTCGGTTGGCTTAGGCATACGGA
692 TGGCCGGCGTAGTGCCTGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * *** * *
2993866 GTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCAATAGTAGGATTGGTAGCACGCAGA
757 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGA
* * * * *
2993931 GGGGGACCC-AGTCGATCCCCGACTTACGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCAC
822 GGGGGACCCGA-CCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * * * *
2993993 ACTCATTTCGTTGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG-----T
** *
2994058 CCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGAACATGCTGGGCTCGGGCATGTGCTGG
61 ---A-TC------CAGACC--A---AGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * **
2994123 TGCCGCATTTTTCTTCGCCGAGGCACCATC-ACTGGAGCATCACCGGTGAACCTGACCGACGGCA
111 TG-CGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCACCGAAGAACCTGACCGACGGCA
* * * * * *
2994187 TTAGAGTTCCGACGATCGGGGGGGTCGAGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTA
174 TTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
2994252 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGCACTCACACCCCTTTAAAGAGC
239 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
2994317 ATTTGAGATTTTACAGGTTTGCTACCA-TAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
304 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
2994381 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTACATGCCAACAAAA
369 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAA
* * * * *
2994446 AATACAAGGATCACGTCTACCAGGTTCGGGGCCAAAAATCCATCCGAAAAAATTTTAAAAAATCC
433 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCT
* ** * *
2994511 CGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCA
498 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
2994576 CGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGCAA
563 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
*
2994641 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCT
628 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * * * * *
2994706 GGCAGGCGTAGTGCCCGCCTGTCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTTGGCATACGGAG
693 GGCCGGCGTAGTGCCTGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* ** * * *
2994771 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTCACGACAGTAGTATCGGCAGCACGCAGAA
758 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAG
* * *
2994836 GGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
823 GGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
** ** * *
2994897 GCTTATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG-T-A-T
* * *
2994962 CACAGTCTAAGATTGGACCGGACCGAGGGTTGC-GACAGCACATGCTAGACTCAGGCATGTGCTG
63 --C---C----A---GACC--A---AGGGTTGCAG-CAGCACATGCTGGGCTCGGGCATGTGCTG
* * *
2995026 GTGCCGTATTTTTCTTCATCGGGGCACCA---TC---G-----CCGGAGAACCTGACCGACGGCA
110 GTG-CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGACGGCA
* *
2995080 TTAGGGTTCCGACGATCGGGGGGGCCGGGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
174 TTGGGGTTCCGGCGATCGGGGGGGCCGGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
2995145 ACTTGGCCCTTATATT-GACCCCTATCCCTCATCAAACCTCGAGAACTCAAACCCCCTTAAAGAG
238 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
2995209 CATTTGAGATTTCACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
303 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
2995274 CAAATGGTTACAAAATCTTGTACAATTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAA
368 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* * * * *
2995339 AATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAAATCCATCCG-AAAAATTTTTAAAAATCC
433 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCT
* * ** * *
2995403 CAAACCGCAAAAAGTTTGGAAAATAGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
498 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
2995468 TGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
563 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
2995533 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
628 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* ** * * * *
2995598 GGCTGGCGTAGTGCCCACCCGCACGCCTTGCCCACTCATTTCGTCGGTTGGCTTAGGCATACGGA
693 GGCCGGCGTAGTGCCTGCCCGCCCGCCCT-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * * *
2995663 GTTCACTCCCAGTCTAAGATCAGATCAGATCAAGGGTTACGGTAGTAGGATCGGCAGCACGTAGA
757 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGA
* *** * *
2995728 GGGGGACCCAACCGATCCCCAACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAT
822 GGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
2995790 GCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCAAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG-T-A-T
*
2995855 CCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAGCAGCGCATGCTGGGCTCGGGCATGTGCTGG
63 --C---C----A---GACC--A---AGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * *** *
2995920 TGCTGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGTTGGAGAACCTGACCGACGGCAT
111 TGC-GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGACGGCAT
* * * * *
2995985 TGGGGTTCCGACGATCGGGGGGGCCAAGGTGGGG-GTGCGCAAAAGATGTACGATGGGTGCTGGT
175 TGGGGTTCCGGCGATCGGGGGGGCC--GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
**
2996049 ACTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
238 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
2996114 CATTTGAGATTTTACAGGTTTGCTGCCATTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTT
303 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
2996179 CAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAA
368 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* ** *
2996244 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTAGAAAAAATTTTAAAAAATCC
433 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCT
* * ** * * *
2996309 CAAACCGCAAAAAGTTTGGAAAATAGTAAAAAATTGAAAACGAGTCGTCTTGCCATGAAACTTCA
498 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
2996374 CGTGAAGGCTTAAGGGACCATAGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAA
563 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * * ** *
2996439 TATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATTCTCGGCTTGCTTATCCCATCTCTCT
628 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
2996504 AGCCGGCATAGTG-CT---CGCCCG-CCTGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATATGGA
693 GGCCGGCGTAGTGCCTGCCCGCCCGCCCT-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * ** * **
2996564 GTTCATTCCCAGTCTAAGATCGGA-TAGGACCGAGGGTTGCAGCAACAAGATCGGCAATACGCAG
757 GTTCATTCCCAGTCTAAGATCGGACCA-GACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAG
* * * *** ** * * ***
2996628 AGGGGGACCTGACCGATCCCTGGCCGACTGAGCA-CCCGTAAGCTCGTTTCATGGGTCG-GCTTA
821 AGGGGGACCCGACCGATCCCTGG-C--TTGCGCATCCCG-CCCCTC-TGGC-CGGCT-GAGCGCC
2996691 CGCA-
879 CGCAC
** * * *** * * * *
2996695 TATGGAGTTCATTCCTAGTC-TAAGCATATGGAGTTCATTCCCAGTCTAAG-AT-C--AG-A-CC
1 GCTCG-TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTATCC
** * *
2996753 AGACCGAA-GGTTGTGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTC-A
65 AGACC-AAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CGCATTTTTCTTCGT
* * * *
2996816 CTGGGGCACCATCGTCGGAGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTCCAGCGATCG
128 C-GGGGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCG
* * *
2996881 GGGGGGTCGGGGCGGGTGTGTGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG
192 GGGGGGCCGGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
2996946 CCGCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
256 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* ** * *
2997011 TTTGTTGGGAGTAGCAATTAAAGTGTCTGAAATGGGGATAC-TTTTTCAAATGGTCACAAAATCT
321 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
2997075 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAGTACAAGGATCATGTCT
386 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
** **
2997140 ACCAAGTTTGGCACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCCCAAAAAGTTTC
451 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTC
* * * * * *
2997205 GAATATCATGAAAAATAGAAAATGTGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGAC
516 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * * *
2997270 CATTGTATGATTTTACAAGCCATAAAAATGGCATTGG--TGCACAAAAATATGAAGATGTGGCTT
581 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG--CAGAAATATGAAGATGTGCCTA
* * ** *
2997333 AACCCACCTATCACCCCAAT-GATCCATAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTACTGCC
644 AACCCACCTACCA-CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* * * * * *
2997397 CGCCCGCCCGCCCACCCACTTGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCTCAGTCTA
708 TGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * ** * ** * * * *** *
2997462 GGATCAGACCGGATAGAAGGTT-CTGATAGTAGGATCGGTAGCATGTAGAGGGGGATAAGGCCGA
773 AGATCGGACCAGACCGAGGGTTGC-GGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
* * * * ** *
2997526 TCCCCGGCTTGTGCATCCTGCCCCTCTGCCCGATTGAGCGCCCCCAC
837 TCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
*
2997573 GCTCGTTTCATGGGTTGACTTAGGCATACGTAGTTCATTCCCAGTCTAAGCATACGGAGT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
2997633 TCATTCCTAG
Statistics
Matches: 11372, Mismatches: 1602, Indels: 1160
0.80 0.11 0.08
Matches are distributed among these distances:
864 1 0.00
865 105 0.01
866 40 0.00
867 169 0.01
868 353 0.03
869 62 0.01
870 261 0.02
871 9 0.00
872 9 0.00
873 2 0.00
874 1 0.00
875 10 0.00
876 381 0.03
877 188 0.02
878 962 0.08
879 373 0.03
880 9 0.00
881 263 0.02
882 109 0.01
883 8 0.00
884 155 0.01
885 182 0.02
886 142 0.01
887 197 0.02
888 677 0.06
889 155 0.01
890 614 0.05
891 160 0.01
892 686 0.06
893 684 0.06
894 548 0.05
895 158 0.01
896 94 0.01
897 53 0.00
898 17 0.00
899 4 0.00
900 9 0.00
901 112 0.01
902 237 0.02
903 805 0.07
904 431 0.04
905 556 0.05
906 281 0.02
907 8 0.00
908 7 0.00
909 142 0.01
911 3 0.00
913 1 0.00
914 9 0.00
915 11 0.00
916 3 0.00
917 3 0.00
919 2 0.00
920 6 0.00
921 4 0.00
922 1 0.00
924 4 0.00
925 3 0.00
926 13 0.00
927 4 0.00
929 8 0.00
930 5 0.00
931 27 0.00
932 21 0.00
933 16 0.00
934 4 0.00
935 4 0.00
936 5 0.00
937 1 0.00
938 7 0.00
939 11 0.00
940 2 0.00
941 5 0.00
942 3 0.00
944 3 0.00
946 8 0.00
947 3 0.00
948 6 0.00
949 2 0.00
950 1 0.00
951 6 0.00
952 1 0.00
953 4 0.00
954 2 0.00
955 2 0.00
956 7 0.00
957 3 0.00
959 4 0.00
960 10 0.00
961 1 0.00
962 9 0.00
963 3 0.00
964 3 0.00
965 4 0.00
966 3 0.00
967 2 0.00
971 2 0.00
972 3 0.00
973 4 0.00
974 3 0.00
975 3 0.00
976 8 0.00
977 1 0.00
978 10 0.00
979 4 0.00
981 4 0.00
982 6 0.00
983 1 0.00
984 2 0.00
985 4 0.00
986 1 0.00
987 6 0.00
988 1 0.00
989 3 0.00
990 4 0.00
991 1 0.00
992 10 0.00
995 3 0.00
997 8 0.00
998 1 0.00
999 1 0.00
1000 10 0.00
1001 7 0.00
1002 5 0.00
1004 4 0.00
1005 4 0.00
1006 15 0.00
1007 23 0.00
1008 27 0.00
1009 4 0.00
1010 8 0.00
1011 3 0.00
1012 1 0.00
1013 14 0.00
1014 2 0.00
1015 4 0.00
1016 1 0.00
1018 1 0.00
1019 1 0.00
1024 202 0.02
1025 239 0.02
1026 201 0.02
1027 200 0.02
1028 189 0.02
1029 154 0.01
1030 252 0.02
1031 226 0.02
1032 220 0.02
1033 281 0.02
1034 144 0.01
1035 129 0.01
1036 162 0.01
1037 319 0.03
1038 203 0.02
1039 169 0.01
1040 644 0.06
1041 219 0.02
1042 144 0.01
1043 122 0.01
1044 90 0.01
1045 390 0.03
1046 182 0.02
1047 125 0.01
1048 660 0.06
1049 630 0.06
1050 118 0.01
1051 94 0.01
1052 151 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (883 bp):
GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTATCCA
GACCAAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCGCATTTTTCTTCGTCGG
GGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGG
GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCC
CGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
CCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCT
TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
Found at i:2990522 original size:26 final size:26
Alignment explanation
Indices: 2990486--2990538 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2990476 GTTGACTTAG
2990486 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2990512 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2990538 G
1 G
2990539 ATCGAACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2991409 original size:26 final size:26
Alignment explanation
Indices: 2991373--2991425 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2991363 GTTGATTGAG
2991373 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
2991399 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2991425 G
1 G
2991426 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2993165 original size:26 final size:26
Alignment explanation
Indices: 2993135--2993187 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2993125 GTTGACTTAG
*
2993135 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
*
2993161 GCATACGGACTTCATTCCTAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
2993187 G
1 G
2993188 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:2994052 original size:26 final size:26
Alignment explanation
Indices: 2994016--2994068 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2994006 GTTGACTTAG
*
2994016 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2994042 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2994068 G
1 G
2994069 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2994580 original size:892 final size:890
Alignment explanation
Indices: 2989619--2997652 Score: 9738
Period size: 892 Copynumber: 9.0 Consensus size: 890
2989609 GTTGACTTAG
* * * * * **
2989619 GCATACGGAGTTCATTCCCAGTCTATGATTGGACCAGACCAAGGATTTTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
2989684 CTCAGGCATGTGCTGGTG-CGACATTTTTCTTCGTCGGGGCACTATCACTGGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCG-CATTTTTCTTCGTCGGGGCACCATC-CTGGAGCATCGCCGGAG
* * * * *
2989748 AACCTGACC-AGCGGCATTGGGGTTCCGGCGAT---------CAAGGGGGTGTGCACACACGACG
129 AACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATG
* * * *
2989803 TGTGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGATCTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
2989868 ACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
2989933 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
2989998 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTTCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * * * ** * * *
2990063 AAATTTAAAAAAATCTCGAATCGTAAAAATTTTTTTAAAAATCGTGAAAAATAAAAAATGAGTTG
453 AAATTTTAAAAAATCCCGAACCGTAAAAA--GTTTCGAAAATCGTGAAAAATAGAAAACGAGTCG
*
2990128 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
2990193 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCT
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
2990258 TGCGCATCCCGTCTCTCTGGCCGACATAGTGCCTGCCCGCCCGCCTGCTTGTTTGGTCGGATGGC
646 TGCGCATCCCGTCTCTCTGGCCGGC---GTG-GTGCCCGCCCG-CT-C--GTTTTGTCGGTTGGC
* * * * * *
2990323 TTAGGCATACTGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGTGGCAGCAGGATC
703 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGGCAGTAGGATC
* * * * * * *
2990388 GACAGCATGCAGAAGAGGACCCGATCGATCCCCGACTTGCGTATCCCACCCCTCTAGCCGGCTGA
768 GGCAGCACGCAGAGGGGGACCCG-TCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
2990453 GTGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
832 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
2990512 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
2990577 C-AGGGCATGTACTGGTGCTGCATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CTGGAGCATCGCCGGAGA
* * * * * *
2990641 ACTTGACAGGCGGCATTGGGGTTTCGGCGAT--------CAG-GGGGGTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTG
*
2990697 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
2990762 ACCCCCTTAAAGAGCATTTGAGATCTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
2990827 GGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAATTTTTAGCTCAA-TTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
2990891 TGAATGCCAAAAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * * *
2990956 ATTTTAAAAAATCCCAAACAGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
2991021 GCCATGAAACTTCACGTGAAGGTTTAAGGGGCCAGTGTATGAATTTACAAGCCAT-AAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** *
2991085 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCACGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
2991150 TATCCCGTCTCTCTGGCCAGCGTAGTGCCCTCCTGCCCGCCCGCTCGTTTTGTCGATTGGCTTAG
650 CATCCCGTCTCTCTGGCCGGCGT-G-G------TGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAG
* * * * *
2991215 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGTAGGATCGGTA
707 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGGCAGTAGGATCGGCA
* * * *
2991280 GCACGCAGAGGGGGACCCGGCTGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCG-
772 GCACGCAGAGGGGGACCCGTC-GATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
2991344 CTGCACGCTCGTTTCGTGGGTTGA-TTGAGGCATACGGAGTTCATTCCCAATCTAA
836 CCGCACGCTCGTTTCGTGGGTTGACTT-AGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
2991399 GCATACGGAGTTCATTCCTAATCTAAGATCGGACCGGACCGAGGGTTACGGCAGTAGATGTTCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
2991464 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACTGAAGCATCACTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CTGGAGCATCGCCGGAGA
* * * ** *
2991529 ACCTGACCGACAGCTTTGGGGTTTCGGTGATCGGGGGGGCCG-GGGGGTGTGCGCGCATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTG
*
2991593 CGATGGGTGCTGGTACTTGG-CC--A-A--------CTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
2991646 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
2991711 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
2991776 TGCATGCCAACAAAAGTACAAGGATCACGTCTTCCAAGTTTGGAGCCAAAACTCCTTTCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * * * *
2991841 ATTTTAAAAAATGCCGAACCATAAAAAGTTTGGAAATTCGTGAAAAATAGAAAATGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
2991906 GCCATGAAACTTCACGTGGAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
2991971 TTGGCATGTAGAAATATGAAGATGTGCCTAAACTCACCTACCATCCTATCGATCCACGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
2992036 TATCCCGTCTCTCTGGCCGGCGTAGTTCCCGCCCGCCCGCGCACCCGCCCATTCGTTTCGTCGGT
650 CATCCCGTCTCTCTGGCCGGCGT-G-----G--TG-CC-CG--CCCG--C--TCGTTTTGTCGGT
* * * * * *
2992101 TGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATTGGATC-GAACAGAGGTTTGCGGCAGCA
699 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAG-ACCGAGGGTTGCGGCAGTA
** * * * *
2992165 GGATCGATAGCACGTAGAGGGGGACCCGGTTGATCCCCGACTCGTGCATCCCGCCCCTCTGGCCG
763 GGATCGGCAGCACGCAGAGGGGGACCC-GTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCG
* ** * *
2992230 GCTGAGTGCCCATACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATT-CC---C--A
827 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
2992288 G---A---AG---------A-TC---GA----ACCGGACTGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * *
2992330 CTCGGGCATGTGCTGGT-CCGCATTTTCCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGCAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CTGGAGCATCGCCGGAGA
** * * * * * * *
2992394 ACCTGACCGGTGGAATTGGGGTTTCGGCGATCGGGGGTGCTG-GGGGGTGTGCACACATGATGTA
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTG
* * *
2992458 CGATGGGTGCTGGCACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
2992523 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAACTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
2992587 GGGGATACTTTTTGCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
2992652 TGCACGCCAACAAAAATACAAGGATCATGTCTACGAAGTTTGGGGCCAAAACTCC-TTCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG-AAAA
* * * * * *
2992716 AATTTAAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACAAGTCATCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
2992781 TGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATCAACTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * **
2992846 ATTGGCACACAGAAATATGAAGATGTGCTTAAACCCACCTACTGCCCTATCGATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * ** * *
2992911 ACATCCCGTCTCTCTGGTCGACGTAGTCCCTGACGCCCGCCTGCTTGTTTAATTGGATGGCTTAG
649 GCATCCCGTCTCTCTGGCCGGCGTGGTGCC---CGCCCG-CT-C--GTTTTGTCGGTTGGCTTAG
* * * * * *
2992976 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAAACCAAGGGTTGCGGCTGCAGGATCGGCA
707 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGGCAGTAGGATCGGCA
* * * * * *
2993041 GCACGCAGAGGGGGACCTGGTCGATCCTCGGCTTACGCATCCCGCCCTTTTGGCCGGCTGAGCGC
772 GCACGCAGAGGGGGACC-CGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
** *
2993106 CCGCACGCTAATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
2993161 GCATACGGACTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
2993226 CTCAGGCATGTGCCGGTGCCGTATTTTTCTTCGCCGGGGCACCAT-C----G--T---CGGAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCTGGAGCATCGCCGGAGAA
* * * * *
2993281 CCTGACCGGCGACTTTGGGGTTTCGACTATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGC
131 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGC
*
2993346 GATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
2993411 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
2993476 GGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
2993541 GCATGCCAACAAAAATACGAGGATCACGTCTACCATGTTTGGGGCCAAAACTCC-TTCTAAAGGA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA-AA
* *
2993605 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
2993670 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACCAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
2993735 TTGGCATGCAGAAACATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATTCACAGCTTACG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
2993800 CATACCGTCTCTCTGGTCGGCGTGGTGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGG
650 CATCCCGTCTCTCTGGCCGGCGTGGTGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGG
*** * *
2993865 AGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCAATAGTAGGATTGGTAGCACGCAG
715 AGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAG
* * *
2993930 AGGGGGACCCAGTCGATCCCCGACTTACGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCACAC
780 AGGGGGACCC-GTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * *
2993995 TCATTTCGTTGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
844 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
2994042 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGAACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
2994107 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCACTGGAGCATCACCGGTGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CTGGAGCATCGCCGGAGA
* * * *
2994172 ACCTGACCGACGGCATTAGAGTTCCGACGATCGGGGGGGTCGAGGGGGTGTGCGTACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTG
*
2994237 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGCACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
2994302 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCA-TAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
2994366 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
2994431 TACATGCCAACAAAAAATACAAGGATCACGTCTACCAGGTTCGGGGCCAAAAATCCATCCGAAAA
390 TGCATGCCAAC-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* * * *
2994496 AATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTTGTCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
2994561 TGCCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
2994626 ATTGGCATGCAGCAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
2994691 GCATCCCGCCTCTCTGGCAGGCGTAGTGCCCGCCTGTCCGCCCGCCCGTTCATTTCGTCGGTTGG
649 GCATCCCGTCTCTCTGGCCGGC---GTG---G--TGCCCGCCCGCTCG-T--TTT-GTCGGTTGG
* * ** * *
2994756 CTTTGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGACCGAGGGTCACGACAGTAGTA
702 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ATCAGACCGAGGGTTGCGGCAGTAGGA
* * *
2994820 TCGGCAGCACGCAGAAGGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCT
766 TCGGCAGCACGCAGAGGGGGACCCG-TCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCT
** *
2994885 GAGCGCCCGCACGCTTATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
830 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
2994946 GCATATGAAGTTCATTCACAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGCACATGCTAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
2995011 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGG---CA--C-----CATCGCCGGAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCTGGAGCATCGCCGGAGAA
* *
2995066 CCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGTGGTGTGCGCACATGATGTG
131 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGG-GGTGTGCGCACATGATGTG
* *
2995131 CGATGGGTGCTGGTACTTGGCCCTTATATT-GACCCCTATCCCTCATCAAACCTCGAGAACTCAA
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
2995195 ACCCCCTTAAAGAGCATTTGAGATTTCACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
2995260 GGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACAATTCGAGTTTTTAGTTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
2995325 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAAATCCATCCG-AAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * * * * *
2995389 ATTTTTAAAAATCCCAAACCGCAAAAAGTTTGGAAAATAGTAAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
2995454 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
2995519 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
2995584 CATCCCGTCTCTCTGGCTGGCGTAGTGCCCACCCGCACGCCTTGCCCACTCATTTCGTCGGTTGG
650 CATCCCGTCTCTCTGGCCGGCGTGGTG----CCCG--C-CC--G----CTCGTTTTGTCGGTTGG
* * * * *
2995649 CTTAGGCATACGGAGTTCACTCCCAGTCTAAGATC-AGATCAGATCAAGGGTTACGGTAGTAGGA
702 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ATCAGACCGAGGGTTGCGGCAGTAGGA
* ** * *
2995713 TCGGCAGCACGTAGAGGGGGACCCAACCGATCCCCAACTTGTGCATCCCGCCCCTCTGGCCGGCT
766 TCGGCAGCACGCAGAGGGGGACCC-GTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
2995778 GAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCAAGTCTAA
830 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
2995839 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAGCAGCGCATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
2995904 CTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCT-GGAGCATCGCCGGAGA
* * * *
2995969 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAAGGTGGGGGTGCGCAAAAGATGT
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGG-GGGTGTGCGCACATGATGT
* **
2996034 ACGATGGGTGCTGGTACTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
2996099 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
2996164 TGGGGATACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
2996229 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTAGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* * * * * *
2996294 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTGGAAAATAGTAAAAAATTGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
2996359 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATAGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
2996424 ATTGGCATGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATTCTCGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * * * * *
2996489 TTATCCCATCTCTCTAGCCGGCATAGTGCTCGCCCGCCTGCCCGCTCGTTTCGTCAGTTGGCTTA
649 GCATCCCGTCTCTCTGGCCGGC---GTGGT-G--C-CC-GCCCGCTCGTTTTGTCGGTTGGCTTA
* * * ** *
2996554 GGCATATGGAGTTCATTCCCAGTCTAAGATCGGAT-AGGACCGAGGGTTGCAGCAACAAGATCGG
706 GGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCA-GACCGAGGGTTGCGGCAGTAGGATCGG
** * *
2996618 CAATACGCAGAGGGGGA--C--C--T----GAC---CG-AT------CC-CTGGCCGACTGAGCA
770 CAGCACGCAGAGGGGGACCCGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * * * * * *
2996662 CCCGTAAGCTCGTTTCATGGGTCGGCTTACGCATATGGAGTTCATTCCTAGTCTAA
835 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
2996718 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
2996783 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTC-ACTGGGGCACCATCGTCGGAGCATCGCTGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCCT-GGAGCATCGCCGGAG
* * *
2996847 AACCTGACCGACGGCATTGGGGTTCC-AGCGATCGGGGGGGTCGGGGCGGGTGTGTGCACATGAT
129 AACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGAGG-GGGTGTGCGCACATGAT
* * *
2996911 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAACCTTGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* ** *
2996976 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGGGAGTAGCAATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
2997041 AATGGGGATAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* ** *
2997105 TTGTGCATGCCAA-AAAAAGTACAAGGATCATGTCTACCAAGTTTGGCACCAAAACTCCTTCCGA
387 TTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
* ** * * * *
2997169 AAAAATTTTAAAAAATCTCGAACCCCAAAAAGTTTCGAATATCATGAAAAATAGAAAATGTGTCG
451 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCG
* *
2997234 TCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * * **
2997299 GGCATTGG--TGCACAAAAATATGAAGATGTGGCTTAACCCACCTATCACCCCAAT-GATCCATA
581 GGCATTGGCATG--CAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCCTATCGATCCACG
** *
2997361 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTACTGCCCGCCCGCCCGCCCACCCACTTGTTTCGTC
643 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTGGTGCCCGCCCGCTCG----------T-TTT-GTC
* * * * * ** * **
2997426 GGTTGGCTTAGGCATACGAAGTTCATTCTCAGTCTAGGATC-AGACCGGATAGAAGGTT-CTGAT
696 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ATCAGACCGAGGGTTGC-GGC
* * * *** * * * *
2997489 AGTAGGATCGGTAGCATGTAGAGGGGGATAAGGCCGATCCCCGGCTTGTGCATCCTGCCCCTCTG
759 AGTAGGATCGGCAGCACGCAGAGGGGGA-CCCGTCGATCCCCGACTTGCGCATCCCGCCCCTCTG
* ** * * *
2997554 CCCGATTGAGCGCCCCCACGCTCGTTTCATGGGTTGACTTAGGCATACGTAGTTCATTCCCAGTC
823 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
2997619 TAA
888 TAA
*
2997622 GCATACGGAGTTCATTCCTAGTCTAAGATCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCG
2997653 AATCAGACTG
Statistics
Matches: 6227, Mismatches: 713, Indels: 391
0.85 0.10 0.05
Matches are distributed among these distances:
864 1 0.00
865 109 0.02
866 47 0.01
867 170 0.03
868 3 0.00
869 3 0.00
870 11 0.00
871 3 0.00
872 1 0.00
873 4 0.00
874 2 0.00
875 7 0.00
876 370 0.06
877 33 0.01
878 288 0.05
879 365 0.06
880 3 0.00
881 281 0.05
882 68 0.01
883 4 0.00
884 146 0.02
885 178 0.03
886 141 0.02
887 199 0.03
888 674 0.11
889 94 0.02
890 9 0.00
891 188 0.03
892 896 0.14
893 508 0.08
894 272 0.04
895 44 0.01
896 95 0.02
897 28 0.00
898 2 0.00
899 1 0.00
900 13 0.00
901 86 0.01
903 7 0.00
904 445 0.07
905 210 0.03
906 206 0.03
907 2 0.00
908 3 0.00
909 5 0.00
910 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (890 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCTGGAGCATCGCCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTGGTGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGA
GGGGGACCCGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:2995842 original size:26 final size:26
Alignment explanation
Indices: 2995813--2995865 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2995803 GTTGACTTAG
*
2995813 GCATATGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
2995839 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
2995865 G
1 G
2995866 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:2996722 original size:26 final size:26
Alignment explanation
Indices: 2996692--2996744 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2996682 GTCGGCTTAC
*
2996692 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
2996718 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
2996744 G
1 G
2996745 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:2997626 original size:26 final size:26
Alignment explanation
Indices: 2997596--2997648 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2997586 GTTGACTTAG
*
2997596 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2997622 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2997648 G
1 G
2997649 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2998715 original size:26 final size:26
Alignment explanation
Indices: 2998679--2998731 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2998669 GCTGAATTAG
*
2998679 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2998705 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2998731 G
1 G
2998732 ACCGAACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3000783 original size:899 final size:899
Alignment explanation
Indices: 2997622--3003454 Score: 7085
Period size: 878 Copynumber: 6.5 Consensus size: 899
2997612 CCCAGTCTAA
* * * *** * *
2997622 GCATACGGAGTTCATTCCTAGTCTAAGATC-GAATCAGACTGAGGGTTGTAACAGCAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCAGGATCAGC
* *** * * *
2997686 AGCACACA-A-ATTGACCCGACCGATCCCCGGCTTACGCACCCCACCCCTCTGGCCGGCTGAGCG
65 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * * *
2997749 CCTGTACGGTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATACG-G
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-GAG
* * * * * * * * *
2997813 AGCTCATTCCAGTATAAAATGGGACCGGACCGAAGGTTACGATAGCACATGCTAGGCTCGAGCAT
194 -GTTCATTCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG-TAGCACATGCTGGGCTCGGGCAT
* *
2997878 GTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCG
257 GTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCG
** *
2997943 ACGGCATTGGGGTTCCGGTGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTAC
322 ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
** *
2998007 TGGTACTTGGCCCTTATATTGGCTGCCTATCCCTCATCAAACCTCGAGAAGTCACACCCCCTTAA
387 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
** *
2998072 AGAGCATTTGAGATTTTACAGGTTTGCTGGGAGTAGCCATTAAAGTGTCTGAAATGGGGATACTT
452 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
2998137 TTTTCAAATGGTCACAAAATCTTGTACAC-TCGAGTTTTTAGCT-AATTTTTTTTGTGCATGCCA
517 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCA
* *
2998200 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCTGAAAAAATTTTAAAA
581 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-AAAAAAATTTTAAAA
* ** * * * *
2998265 AATCCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCCTTTTGCCTTGAAA
645 AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
* * * * **
2998330 CTTCACGTGAAGGCTTAAGGGACCACTGT-TCGAATTTACAAGTCATAAAAATTGCATTAGCATG
710 CTTCACGTGAAGGCTTAAGGGACCATTGTAT-GAATTTACAAGCCATAAAAATGGCATTGGCACA
* * *
2998394 TAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGT
774 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
2998459 CTCTCTGGCCGGCGTAGTGCCCGCCCACCCG-CTCGCCCGCTCGTTTCGTCGGCTGGCTTAG
839 CTCTCTGGCCAGCGTATTGCCCGCCCGCCCGTC-CGCCCGCTCGTTTCGTCAGTTGGCTTAG
* ** * * *
2998520 GCATACGGAGTTCATTCCCAATCTAAGATTGGACCGGACCGAGGGTTGCGGTAGGAGGATC-GAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAG-C
* * * * *
2998584 AGCACGTAGAGGAGGACCTGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGTCGGCTGAGCG
65 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * *
2998649 CCCGCACGCTCGTTTCGTGGGCTGAATTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACG-G
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-GAG
* * * * *
2998713 AGTTCATTCCCAGTCTAAGACCGAACTAGACCGAGGGTTATG-GTAGCACATGCTGGGCCCGAGC
194 -GTTCATT-CCAGTCTAAGATCGGACCAGACCGAGGG-T-TGCGTAGCACATGCTGGGCTCGGGC
* * * * *
2998777 ATGTGCTGGTGCCACATTTTTCTTAGCCGGGGCACCATCACCAGAGCATCGTCGGAGAACCTGAC
255 ATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGAC
* *
2998842 CGATGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGTGGTGTGCGCACATGATGTGCGATGGG
320 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGTGTGCGCACATGATGTGCGATGGG
2998907 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
384 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
2998972 TAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAT-GGGAC
449 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGAC
*
2999036 ACTTTTTTCAAATGGTCACAAAATCTTGTACA-GTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
513 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
2999100 CCAACAAAAATACAAGGATCACATCCACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTA
578 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCAAAAAAATTTTA
* *
2999165 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATAATGAAAAATAAAAAAAACGAGTCATCTTGCCA
642 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT--AGAAAACGAGTCATCTTGCCA
*
2999230 TGAAACTTCACGTGAAGGCGTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
705 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*** * * * *
2999295 CATGTAGAAATATGAAGAAGTGCCTAAACCCACCTACCATCCTATCGATCCACGACTTGCGCGTC
770 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * *
2999360 CCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCC-TCCCACCCCGCTCGTTTCGTCGGTTGGCTG
835 CCGTCTCTCTGGCCAGCGTATTGCCCGCCCGCCCGT-CC-GCCCGCTCGTTTCGTCAGTTGGCTT
2999424 AG
898 AG
* ** * * *
2999426 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGGCCGAGGGTTGCGGCAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAGCA
* * ** *
2999491 GCACACAGAGAGGGACCCGATGGATCCCCGGCTTAG-GCATCCCGCCCCTCTGGCCGACTGAGCG
66 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTT-GCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
2999555 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATACCCAGTCT----AT----G
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGAGG
* * * *
2999612 --------A-TC----A---GACCAGATCGAGGGTTGCGGTAGCACATGATGGTCTCAGGCATGT
195 TTCATTCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GTAGCACATGCTGGGCTCGGGCATGT
* * * * *
2999661 GCTGGTGCTGCATTTTTCTTCACCGAGGCACCATCGCCGGGGCATCGCCGGAGAACCTGATCGAC
259 GCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGAC
* * ** ** * *
2999726 GGCACTAGGGTTCCGGTGATCGGGGTGGTCGGGGGGGGGTGTGCGTACATGATGTGCGTTGGGTG
324 GGCATTGGGGTTCCGACGATCGGGG-GG--GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
2999791 CTCGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
386 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
2999856 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGAGTCTGGAATGGGGACACT
451 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
2999921 TTTTCCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTGAATTTTTTTTTGCATGCCA
516 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
2999985 ACCAAAATACAAGGATCACATCTACCATGTTTGGGGCCAAAACTCCTTCAAAAAAATTTTAAAAA
581 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAAAAAAATTTTAAAAA
** * * *
3000050 ATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
646 ATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
* * *
3000115 TTCACGTGAAGGCTTATGGGACCGTTGTATTAATTTACAAGCCATAAAAATGGCATTGGCACACA
711 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
* * *
3000180 AAAATTTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTCGCGCATCCCGTCT
776 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * *
3000245 CTCTGGCCAGCGTATTGTCTGCCCGTCCGTCCGCCCGTTCGTTTTGTCAGTTGGCTTAG
841 CTCTGGCCAGCGTATTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
** * * ** *
3000304 GCATACGGAGTTCATTCCCAGT-TAAGATTGGACCAGTCCGAGGGTTACTACAGCAAGATCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAGCA
* * * *
3000368 GCACGGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCTGCCCCTCTAGCCGACTGAGCG
66 GCAC-GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * * *
3000433 CCCGGACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCACAATTTAAGCATAGAGG
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGAGG
*
3000498 TTCATTCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGT
195 TTCATTCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GTAGCACATGCTGGGCTCGGGCATGT
* * * * * * *
3000563 GCTGGTGCCGTATTTTTCTTTGCCAGGGCACCATCACCGGAGCATCACCGGAGAACCTCACTGAC
259 GCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGAC
* * * * *
3000628 GGCTTTAGGGTTTCGACGATCGGGGGGGCCGAGGGGTGTGCGCACATGATGTGTGATGGGTGCTG
324 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
3000693 GTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAG
389 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
3000758 AGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGATACTTTT
454 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
3000823 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTGTTTTGTGCATGCCAAC-
519 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* *
3000887 AAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
584 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CAAAAAAATTTTAAAAAAT
* * *
3000952 CCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCTTCTTGCCATGAAACTT
648 CCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
* * *
3001017 CACGTGAAGGCTTAAGGGACCATTGCATGATTTTACAAGCCATAAAAATGGCATTGGCACATAGA
713 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
* * * *
3001082 AATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCGCGGCTTACGGATCCCGTCTCT
778 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * *
3001147 CTGGCC-GACATAATGCTCGCCCGCCCG--C-CCCGCTCGTTTCGTCAGTTGGCTTAG
843 CTGGCCAG-CGTATTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
* * * * *
3001201 CCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGATGGTTGTGGCAACAGGATCTA-C
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC-AGC
* * ** * * *
3001265 AGCACACAGAGAGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGACTAAGCG
65 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * *
3001330 CCCGCACGCTCGTTTCATGGGTTGACTCAGGCATACGGAGTTCATTCCCAGTCTAAGCAT-GCGG
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAG-AG
* * *
3001394 AGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCAGTAGCACATGCTTGGCTTGGGCA
194 -GTTCATT-CCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GTAGCACATGCTGGGCTCGGGCA
* * * * * * * **
3001459 TGTGCTGGAGCTGCACTTTTCTTCGTCGGGGCACAATCGTCGGAGCATCGTCAAAGAACCTGACC
256 TGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACC
* * *
3001524 GACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGTGTGCGCGCATGTTGTGTGATGGGTG
321 GACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
3001588 CTGGTACATGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
386 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
3001653 AAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGTAATGGGGACACT
451 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
3001718 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCA
516 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
3001783 ACAAAAATACAAGGATCACGTTTACCAAGTTTGGGGCCAAAACTCCCTCCAAAAAAATTTTAAAA
581 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCAAAAAAATTTTAAAA
*** * * * *
3001848 AATTTTGAACTGTAAAAAGTTAT-GAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAA
645 AATCCCGAACCGCAAAAAGTT-TCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
* * * *
3001912 ACTTCACGTGAAGGCTTAAGGGACTATTGTATAAATTTGCAAGCCATAAAAATGGAATTGGCACA
709 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
* * * * * *
3001977 CAGAAATATGAAGATGTGCCTAAATCCACCTACTAGCCTATTGATCCATGGCTTGCGTATCCCGT
774 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
3002042 CTCTCTGGCCAGCAT-TGTGCCCGCCCGCCTG-CCTGCCCGCTCATTTCATCAGTTGGCTTCG
839 CTCTCTGGCCAGCGTAT-TGCCCGCCCGCCCGTCC-GCCCGCTCGTTTCGTCAGTTGGCTTAG
* * * * * * ** * * * *
3002103 GCATACAGAGTTCATACGCAGTCTAAGATTAGACTAAACAAAGGGTTGCAGTAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAGCA
* * * * * *
3002168 TG-ATGCAGAGGGGGATCAGGCCGATCCCCAGCTTGCGCATCCAGCCCCTCTGGCCGGCTGAGCG
66 -GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* *
3002232 CCCGTACGCTCGTTTCATGGGTTGACTTAGGCATAC---G---A-----AGT-T---C----A--
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGAGG
* * *
3002276 TTC---CCAGTCCAAGATCGGACCGGACCGAGGGTTGCGATAGCAGATGCTAGGGCTCGGGCATG
195 TTCATTCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG-TAGCACATGCT-GGGCTCGGGCATG
* * * * *
3002338 TGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCACCGAAGAACCTGACCGG
258 TGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA
* * *
3002403 CGGCATTGAGGTTCCCG-CGATCGGGGGGTCCGGGGGGGTGCGCGCACATGATGTGCGATGGGTG
323 CGGCATTGGGGTT-CCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
3002467 ATGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
386 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
3002531 AAGGGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACT
451 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
3002596 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
516 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
3002661 ACAAAAATACAAGGATCATGTTTACCAAGTTTGGGGCCAAAA-TGCCTTTCAAAAAATTTTTTAA
581 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CC-TTCAAAAAAATTTTAAA
* *
3002725 AAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
644 AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
* ** **
3002790 ACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATTTCATTGGCATG
709 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
* * * *
3002855 CAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTGTCGATCCATGACTTGCGCATCCCGT
774 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * * * * * * *
3002920 CTCTCTAG-CTGATGTAGTT-CCCGCCCGCCTGCCCGCCTGTTCGTTTCGTCGGATGGCTTCG
839 CTCTCTGGCCAG-CGTA-TTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
* * * ** *
3002981 GCATATGGAGTTCATTCCCTA-TCTAAGATCAAACC-GAATCGAGGGTTGCGGTGGTAGGATCAG
1 GCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCAG
* * * * * * *
3003044 TAGCATGGAGAGGGGGACCC-AGCCGATCCCCTGCTT-CTGCATCTCGTCCCTCTGGCCGGTTGA
64 CAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGC-GCATCCCGCCCCTCTGGCCGGCTGA
* * * *
3003107 GTGCCCGCACGCTTGTTTCAG-GGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTATGCATA
127 GCGCCCGCACGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* ** *
3003171 CGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGG
191 -GAGGTTCATT-CCAGTCTAAGATCGGACCAGACCGAGGGTTGCG-TAGCACATGCTGGGCTCGG
* * ** * * * * *
3003236 GCATGAGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCACCAGAGCATCACCGCAAAACCTG
253 GCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
* * * ** * ** * *
3003301 ACC-AGTGGCATTGGCGTTCTGGTGATCGAGGGCACTGGGGGAGGTGTGCGCACATGATGTGCAA
318 ACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGC-CGGGG-GGTGTGCGCACATGATGTGCGA
* * *
3003365 TGGGTTCTGGTACTTGG-CCTCTATATTGGCCCCTTATCCTTCATCAAACCTCGAGAACTCACAC
380 TGGGTGCTGGTACTTGGCCCT-TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
3003429 CCCTTTAAAGAGCATTTGAGATTTTA
444 CCCCTTAAAGAGCATTTGAGATTTTA
3003455 TGGAAGTCAT
Statistics
Matches: 4276, Mismatches: 537, Indels: 237
0.85 0.11 0.05
Matches are distributed among these distances:
875 1 0.00
876 39 0.01
877 132 0.03
878 703 0.16
879 217 0.05
880 112 0.03
881 59 0.01
882 246 0.06
883 11 0.00
884 1 0.00
886 1 0.00
887 3 0.00
888 1 0.00
889 3 0.00
890 2 0.00
891 3 0.00
893 1 0.00
894 1 0.00
895 2 0.00
896 2 0.00
897 153 0.04
898 313 0.07
899 612 0.14
900 360 0.08
901 122 0.03
902 284 0.07
903 392 0.09
904 93 0.02
905 222 0.05
906 183 0.04
907 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAGCA
GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGAGGT
TCATTCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGTAGCACATGCTGGGCTCGGGCATGTGC
TGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGG
CATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAAAAAAATTTTAAAAAATCCC
GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCAGCGTATTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
Found at i:3001394 original size:26 final size:26
Alignment explanation
Indices: 3001360--3001412 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3001350 GTTGACTCAG
3001360 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3001386 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3001412 G
1 G
3001413 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3003169 original size:26 final size:26
Alignment explanation
Indices: 3003140--3003190 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
3003130 GTTGACTTAG
3003140 GCATAC-AGAGTTCATTCCCAGTCTAT
1 GCATACGA-AGTTCATTCCCAGTCTAT
3003166 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
3003191 AGATCGGACT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAT
Found at i:3003653 original size:26 final size:26
Alignment explanation
Indices: 3003613--3003673 Score: 104
Period size: 26 Copynumber: 2.3 Consensus size: 26
3003603 ACTTAGGCAC
3003613 ATGGAGTTTCATTCCCAGTCTAAGCAT
1 ATGGAG-TTCATTCCCAGTCTAAGCAT
3003640 ATGGAGTTCATTCCCAGTCTAAGCAT
1 ATGGAGTTCATTCCCAGTCTAAGCAT
*
3003666 ATTGAGTT
1 ATGGAGTT
3003674 GCGGCAGCAC
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 27 0.82
27 6 0.18
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (26 bp):
ATGGAGTTCATTCCCAGTCTAAGCAT
Found at i:3003898 original size:459 final size:465
Alignment explanation
Indices: 3002984--3003913 Score: 1116
Period size: 469 Copynumber: 2.0 Consensus size: 465
3002974 GGCTTCGGCA
* * * * *
3002984 TATGGAGTTCATTCCCTATCTAAGATCAAACCGAATCGAGGGTTGCGGTGGTAGGATCAGTAGCA
1 TATGGAGTTCATTCCCTATCTAAGATCAAACCGAACCGAGGGTTGCGGTAGCAAGATCAGCAGCA
* * * * * * **
3003049 TGGAGAGGGGGACCCAGCCGATCCCCTGCTTCTGCATCTCGTCCCTCTGGCCGGTTGAGTGCCCG
66 CGCAGAGGGGGACCCAGCCAATCCCCTGCTTCTGCATCTCGCCCCTCTGGCCAGCTGAACGCCCG
* * * *
3003114 CACGCTTGTTTCAGGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTATGCATACGAAGTTC
131 CACACTCGTTTCAGGGGTTGACTTAGGCACACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTC
3003179 ATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGAGC
196 ATTCCCAGTCTAAGA-C-GACT-GACCGA-GGTTGCGACAGCACATGCTGGGCTCGGGCATGAGC
*
3003244 TGGTGCCGTATTTTTCTTCATCGGGGCACCATCACCAGAGCATCACCGCAAAACCTGACCAGTGG
257 TGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCAGAGCATCACCGCAAAACCTGACCAGTGG
* ** ** *
3003309 CATTGGCGTTCTGGTGATCGAGGGCACTGGGGGAGGTGTGCGCACATGATGTGCAATGGGTTCTG
322 CATTGGCGTTCCGACGATCGAGGGCACTCAGGGAGGTGTGCGCACATGATGTGCAATGGGTGCTG
* *
3003374 GTACTTGGCCTCTATATTGGCCCCTTATCCTTCATCAAACCTCGAGAACTCACACCCCTTTAAAG
387 GTACTTGGCCTCTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
3003439 AGCATTTGAGATTT
452 AGCATTTGAGATTT
* *
3003453 TATGGAAG-TCATTCCC-AGTCTAAGATCAGATCGAACCGAGGGTTGCGGTAGCAAGATCAGCAG
1 TATGG-AGTTCATTCCCTA-TCTAAGATCAAACCGAACCGAGGGTTGCGGTAGCAAGATCAGCAG
3003516 CACGCAGAGGGGGA-CCAGGCCAAT-CCCTGGCTTGC-GCATCTCGCCCCTCTGGCCAGCTGAAC
64 CACGCAGAGGGGGACCCA-GCCAATCCCCT-GCTT-CTGCATCTCGCCCCTCTGGCCAGCTGAAC
** * ** *
3003578 GGTCGCACACTCG-TTCCGTGGGTTGACTTAGGCACATGGAGTTTCATTCCCAGTCTAAGCATAT
126 GCCCGCACACTCGTTTCAG-GGGTTGACTTAGGCACACAGAG-TTCATTCCCAGTCTAAGCATAC
* ** *
3003642 GGAGTTCATTCCCAGTCTAAG-C-A-T-ATTGA-GTTGCGGCAGCACATGCTGGGCTCGGGCATG
189 GAAGTTCATTCCCAGTCTAAGACGACTGACCGAGGTTGCGACAGCACATGCTGGGCTCGGGCATG
* * * * ** * *** * * * * *
3003702 TGCTGGTGCCGCATTTTTCTTCGTCGGGGTATCATCGTCGGAGCATCGTTGGAGACCCTGATCGG
254 AGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCAGAGCATCACCGCAAAACCTGACCAG
* *** *
3003767 TGGCATTGGGGTTCCGACGATCG-GGGGGGTCAGGG-GGTGTGCGCACATGATGTGCGATGGGTG
319 TGGCATTGGCGTTCCGACGATCGAGGGCACTCAGGGAGGTGTGCGCACATGATGTGCAATGGGTG
3003830 CTGGTACTTGGCC-CTTATATTGGCCCCCTATGCC-TCATCAAACCTCGAGAACTCACACCCCCT
384 CTGGTACTTGGCCTC-TATATTGGCCCCCTAT-CCTTCATCAAACCTCGAGAACTCACACCCCCT
3003893 TAAAGAGCATTTGAGATTT
447 TAAAGAGCATTTGAGATTT
3003912 TA
1 TA
3003914 CAGGTTTGCT
Statistics
Matches: 394, Mismatches: 58, Indels: 28
0.82 0.12 0.06
Matches are distributed among these distances:
458 1 0.00
459 103 0.26
460 9 0.02
461 98 0.25
463 3 0.01
465 1 0.00
466 1 0.00
468 13 0.03
469 122 0.31
470 43 0.11
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (465 bp):
TATGGAGTTCATTCCCTATCTAAGATCAAACCGAACCGAGGGTTGCGGTAGCAAGATCAGCAGCA
CGCAGAGGGGGACCCAGCCAATCCCCTGCTTCTGCATCTCGCCCCTCTGGCCAGCTGAACGCCCG
CACACTCGTTTCAGGGGTTGACTTAGGCACACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTC
ATTCCCAGTCTAAGACGACTGACCGAGGTTGCGACAGCACATGCTGGGCTCGGGCATGAGCTGGT
GCCGCATTTTTCTTCATCGGGGCACCATCACCAGAGCATCACCGCAAAACCTGACCAGTGGCATT
GGCGTTCCGACGATCGAGGGCACTCAGGGAGGTGTGCGCACATGATGTGCAATGGGTGCTGGTAC
TTGGCCTCTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTT
Found at i:3004842 original size:26 final size:26
Alignment explanation
Indices: 3004812--3004864 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3004802 GTTGACTTAG
3004812 GCATACAAAGTTCATTCCCAATCTAA
1 GCATACAAAGTTCATTCCCAATCTAA
** * *
3004838 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAAAGTTCATTCCCAATCTAA
3004864 G
1 G
3004865 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAATCTAA
Found at i:3006230 original size:902 final size:889
Alignment explanation
Indices: 3004169--3007377 Score: 4178
Period size: 875 Copynumber: 3.6 Consensus size: 889
3004159 TGTGATGGCT
* * *
3004169 TATCCCTCATCAAACGTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGT
1 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
3004234 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
3004299 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCCTGCCAACAAAAATACAAGGATCACGTCTACCAA
131 ACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAA
* * ** *
3004364 GTTTGGAGCAAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCACAAAAAGCTTCAAAAA
195 GTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
3004429 TCGTGAAAAATAGAAAACGAGTCATCTTGCCATTAAAACTTCACGTGAAGGCTTAAGGGACCATT
260 TCGTGAAAAATAGAAAACGAGTCATCTTGCCA-TAAAACTTCACGTGAAGGCTTAAGGGACCATT
*
3004494 GTATGAATTTACAAGCCATAAAAATGGCATTGGCA-CATAGAAATATGAAGATGTGACTAAACCC
324 GTATGAATTTACAAGCCATAAAAATGGCATTGGCAGC--AGAAATATGAAGATGTGCCTAAACCC
* * * * * **
3004558 ACCTAACACCCTAACGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
387 ACCTACCACCCT-ATGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGCAGCCCCCGCCCG
* * * * * *
3004623 CCCGCCCGTTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT
451 CCTGCCCGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * * *
3004688 GGACCGAGGGGTGCGATAGCAGGATCGACAGCACGCAGAGCGGGACTCGGCCGATCCTCGGCTTG
516 GGACCGAGGGTTGCGGTAGCAGGATTGACAGCACGTAGAG-GGGACCCGACCGATCCTCGGCTTA
** *
3004753 CGCATCCCATCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
580 CGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * *
3004818 AAAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGACCGAGGG
645 -AAGTT-AGTCCCAGTCTAAGC-TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
* * * * *
3004883 TTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGGATTTTTCTTCATCGGGGCACCAT
707 TTGCG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCCT-GGGGCACCAT
* ** **
3004948 --C---G--T-C-GGAGAACCTGACCGACGGCATTGGGGTTTTAGCGATCGGGGGGGCCGGAGGG
770 CGCGGAGCATCCTGGAGAACCTGACCGACGGCATTAGGGTTCCAGCGATTAGGGGGGCCGG-GGG
* * *
3005004 GGTGTGCACACATGATGTGCGATGGGTGCTAGTACTTGGACCTTATATTGGTCCCC
834 GGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
3005060 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTTG
1 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTG
* * *
3005125 GTGCCAGTAGCCATTAAAGTGTTTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
65 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
*
3005190 CACTTCGAGTTTTTAGTTGAA-ATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
130 CACTTCGAGTTTTTAGCTGAATA-TTTTTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACC
** * *
3005254 AAGTTTGGGG-C-AAAATCCTTTTAAAAAAATTTTAAAAAATCCCGAGCCGTAAAAAGTTTCAAA
193 AAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAA
* * *
3005317 AATCATGAAAAATAGAAAACAAGTCATCTTGCCATTAAAACTTCACGTGAATGCTTAAGGGACCA
258 AATCGTGAAAAATAGAAAACGAGTCATCTTGCCA-TAAAACTTCACGTGAAGGCTTAAGGGACCA
3005382 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGACA-CAGAAATATGAAGATGTG-CTAAACC
322 TTGTATGAATTTACAAGCCATAAAAATGGCATTGG-CAGCAGAAATATGAAGATGTGCCTAAACC
* *
3005445 CA-CTACCACCCTATGATCTA-ACGCTTGCGCATCCCGTCTCTCTGGCACGTAATGCCGCCGCCC
386 CACCTACCACCCTATGATCCACA-GCTTGCGCATCCCGTCTCTCTGGC-CG----G-CGCAGCCC
* * * *
3005508 GCCGCCCGCCCGGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAA
444 -CCGCCCG-CCTGCCCGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAA
* * *
3005573 GATCAGACCGGACAGAGGGTTGCGGTAGCAGGATTGACAGCA-ATAGAGGGAGACCCGATCGATC
507 GATCAGACCGGACCGAGGGTTGCGGTAGCAGGATTGACAGCACGTAGAGGG-GACCCGACCGATC
* * * * * *
3005637 CTCGACTTACGCATCCCGCCCCTCTGGCCGGTTGAGCACCCGTACACTCGTTTCGTGGGTTGACT
571 CTCGGCTTACGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
3005702 TAGGCATACAGAGTTAGATCCCAGTCTAAGCTTACGGAGTTCATTCCCAGTCTAAGATCGGACCA
636 TAGGCATACA-AGTTAG-TCCCAGTCTAAGC-TACGGAGTTCATTCCCAGTCTAAGATCGGACCA
3005767 GACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCTG
698 GACCGAGGGTTGC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTC-CTG
3005832 GGGCACCATCGCCGGAGCATCACTGGAGAACCTGACCGACGGCATTAGGGTTCCAGCGATTAGGG
761 GGGCACCATCG-CGGAGCATC-CTGGAGAACCTGACCGACGGCATTAGGGTTCCAGCGATTAGGG
* * *
3005897 CGG-CTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
824 GGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
3005961 C
889 C
3005962 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
1 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
3006027 TGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
3006092 ACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAAAAAATACTAGGATCATGTCTACCAAG
131 ACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAG
* * * * * *
3006157 TTTGGGGCCAAAACTCCTCCCGAAAAAATTTTAAAAAAACTCGAACCGTAAAAAGTTTCGAAAGT
196 TTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT
* *
3006222 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
261 CGTGAAAAATAGAAAACGAGTCATCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
3006287 ATGAATTTACAAGCCATAAGAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCC-CC
326 ATGAATTTACAAGCCATAAAAATGGCATTGGCA-GCAGAAATATGAAGATGTGCCTAAACCCACC
* * ** * *
3006351 TACCACCCTATTGATCCACAGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGGCCGCTT
390 TACCACCCTA-TGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGCAGCCCCCGCCCGCCT
3006416 GCCCGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
454 GCCCGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * *
3006481 CCGAGGGTTGTGGCAGCAGGA-TCAGCAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTACG
519 CCGAGGGTTGCGGTAGCAGGATTGA-CAGCACGTAGA-GGGGACCCGACCGATCCTCGGCTTACG
* *
3006545 CATCCCCGCCCCTCTAGCTGGCTGAGCGCCTGCACGCTCGTTTCGT-GG--G--TT-----TAC-
582 CAT-CCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACA
*
3006599 --TTAG-----G-C--AG--ACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGC
646 AGTTAGTCCCAGTCTAAGCTACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
* ** * *
3006652 GGTAGCACATGCTGGGCTCTAGCATGTGCTGGTGCCGC-TTTTTTCTTCACCGGTGCACCATCGT
711 -GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTT-TTC-CTGGGGCACCATCG-
* * * ** * * *
3006716 CGGAGCATCGTCGGAGAACCTGACCGGCGGC-TTTGGTGGACCGGGGA-TCGGGGGGTCCGGGGG
772 CGGAGCATCCT-GGAGAACCTGACCGACGGCATTAGG-GTTCCAGCGATTAGGGGGG-CC--GGG
*
3006779 GGGGTGTGCTCACATGATGTGC-AGTGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCC
832 GGGGTGTGCACACATGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCC
* *
3006838 -ATCCCTCATCAAACCTCAAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTAC
1 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
3006902 TGCCAGTAGCTATTAAAGTGTCCGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * * *
3006967 ACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAGAAAAAATGCAAGGATCACTTCTGCCAA
131 ACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCA-AAAAAATACAAGGATCACGTCTACCAA
** * *
3007032 GTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTAAAAAA
195 GTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTT-CAAAA
* * *
3007097 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATT
259 ATCGTGAAAAATAGAAAACGAGTCATCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
3007162 GTATGAATTTACAAGCAATAAAAATTGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
324 GTATGAATTTACAAGCCATAAAAATGGCATTGGCA-GCAGAAATATGAAGATGTGCCTAAACCCA
* *
3007227 CCTACCACCCTATCGATCCAC-GACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG
388 CCTACCACCCTAT-GATCCACAG-CTTGCGCATCCCGTCTCTCTGGCCGGCGCA--G-CC-CCCG
* * * *
3007291 CCCGACTGCCTGCCCGCTCATTTTGTCGGTTGGCTTAGGCATAAGGAGTTCATTTCAAGTCTAAG
447 -CC--C-GCCTGCCCGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAG
*
3007356 ATCAGACCAGACCGAGGGTTGC
508 ATCAGACCGGACCGAGGGTTGC
3007378 AGCAGCACAT
Statistics
Matches: 2068, Mismatches: 186, Indels: 133
0.87 0.08 0.06
Matches are distributed among these distances:
871 17 0.01
872 126 0.06
873 1 0.00
874 1 0.00
875 213 0.10
876 80 0.04
877 129 0.06
878 48 0.02
880 1 0.00
882 4 0.00
883 1 0.00
884 4 0.00
885 1 0.00
886 102 0.05
887 11 0.01
888 12 0.01
889 17 0.01
890 142 0.07
891 62 0.03
892 140 0.07
893 201 0.10
894 89 0.04
895 3 0.00
896 87 0.04
897 37 0.02
898 42 0.02
899 2 0.00
900 36 0.02
901 163 0.08
902 204 0.10
903 24 0.01
904 67 0.03
905 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (889 bp):
TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
ACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAG
TTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT
CGTGAAAAATAGAAAACGAGTCATCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGT
ATGAATTTACAAGCCATAAAAATGGCATTGGCAGCAGAAATATGAAGATGTGCCTAAACCCACCT
ACCACCCTATGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGCAGCCCCCGCCCGCCTGC
CCGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
GAGGGTTGCGGTAGCAGGATTGACAGCACGTAGAGGGGACCCGACCGATCCTCGGCTTACGCATC
CCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAAGTTA
GTCCCAGTCTAAGCTACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGCAGC
ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCCTGGGGCACCATCGCGGAGCATC
CTGGAGAACCTGACCGACGGCATTAGGGTTCCAGCGATTAGGGGGGCCGGGGGGGTGTGCACACA
TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
Found at i:3008392 original size:716 final size:710
Alignment explanation
Indices: 3006579--3008789 Score: 2990
Period size: 709 Copynumber: 3.1 Consensus size: 710
3006569 AGCGCCTGCA
* ** * *
3006579 CGCTCGTTTCGTGGGTTTACTTAGGCAGACGGAGTTCATTCCCAGTG-TAAGATCGGACCAGACC
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAG-GCTAAGATCGGACCAGACC
* ** *
3006643 GAGGGTTGCGGTAGCACATGCTGGGCTCTAGCATGTGCTGGTGCCGCT-TTTTTCTTCACCGGTG
65 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-ATATTTTTCTTCACCGG-G
* * * * *
3006707 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCTTTGGTGG-ACCGGGGATCGGGGGG
128 CACCATC-TCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGG-GGTTCTGGCGATCGGGGGG
*
3006771 TCCGGGGGGGGGTGTGCTCACATGATGTGC-AGTGGGTGCTGGTACTTGGCCCTTATATTGGCTC
191 -CC---GGGGGGTGTGCGCACATGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGC-C
*
3006835 CCC-ATCCCTCATCAAACCTC-AAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGT
250 CCCTATCCCTCATCAAACCTCGAA-AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
3006898 TTACTGCCAGTAGCTATTAAAGTGTCCGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTT
314 TTGCTGCCAGTAGC-ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* *
3006963 GTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAGAAAAAATGCAAGGATCACT-TCT
378 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-AAAAAATACAAGGATCA-TGTCT
* **
3007027 GCCAAGTTTGGGGCCAAAA-ATCCTTCTGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTT
441 GCCAAGTTTGGGGCCAAAACTTATTTC-GAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTT
* *
3007091 AAAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGG
505 --CAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
*
3007156 ACCATTGTATGAATTTACAAGCAATAAAAATTGCATTGGCATGCAGAAATATGAAGATGTGCCTA
568 ACCATTGTATGAATTTACAAGC-ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* *
3007221 AACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
632 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGCAGTGCCC
3007286 GCCCGCCCGACTGCCTGCC
697 GCCCGCCCG-C--CCT--C
* * * * * *
3007305 CGCTCATTTTGTCGGTTGGCTTAGGCATAAGGAGTTCATTTCAAGTCTAAGATCAGACCAGACCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGGCTAAGATCGGACCAGACCG
* ** * **
3007370 AGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTTATGTCGCATTTTTCTTCACCGGGGCA
66 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCACC-GGGCA
*
3007435 CCA--T-----CA-C-T-GGAGAAGCTGACCGACGGCATTGGGGTTCTGGCGATC-GGGGG-CGG
130 CCATCTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGCCGG
3007488 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
195 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
3007553 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGT
260 CATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
3007618 AGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
325 AG-CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
3007683 GTTTTTAGATGATTTTTTTTGTGCATGCCAACAAAAGTACAAGGATCATGTCTGCCAAGTTTGGG
389 GTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCATGTCTGCCAAGTTTGGG
* * *
3007748 GCCAAAACTTATTTCGAAAAAATTTTGAAAAAT-TCCGAACCGTAAAAAGTTTCCAAAATCATGA
453 GCCAAAACTTATTTCGAAAAAATTTTAAAAAATCT-CAAACCGTAAAAAGTTT-CAAAATCGTGA
*
3007812 AAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
516 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * * * *
3007877 TTTATAAGACATAAAAATGGCATTGGTAGGTAGAAATAGGAAGATGTGCCTAAACCCACCTATCA
581 TTTACAAG-CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
3007942 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGCAGTGCCCGCCCGCCCGCCCA
645 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGCAGTGCCCGCCCGCCCGCCC-
3008007 TC
709 TC
* * *
3008009 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGGCTAAGATCGGACCGGATCA
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGGCTAAGATCGGACCAGACCG
* * *
3008074 AGGGTTACGGCATCACATGCTGGGCTCGGGCATGTGCTGGGGCCATATTTTTCTTCACCGAGGCA
66 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCACCG-GGCA
* * *
3008139 CCATCTCGGAGCATCGTCGGAGAACCTAACCGAAGGCATTGGGGTTCTGACGATCGGGGGGCCGG
130 CCATCTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGCCGG
3008204 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
195 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
3008269 CATCAAACCTCGAAAATTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
260 CATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
3008334 AGTCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
325 AG-CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * * *
3008399 GTTCTTAGCTGAATTTTTTTGTGGCATGCCAAAAAAAAATACAACGATCACGTCTACCAAGTTTA
389 GTTTTTAGCTGAATTTTTTTGT-GCATGCC--AAAAAAATACAAGGATCATGTCTGCCAAGTTTG
* * *** *
3008464 GGGCCAAAACTCATTCCGAAAAAATTTTAAAAAATCTCAAACTACAAAAAGCTTCAAAATTCGTG
451 GGGCCAAAACTTATTTCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAA-TCGTG
* * *
3008529 AAAAATAGAAAACGAGTCGTCTTGCCATCAAACTTCACGTGAAAGCTT-AGGGACCATTGTATTA
515 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
3008593 ATTTACAAGCCATTAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACATACC
580 ATTTACAAG-CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * **
3008658 GCCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCC--CGC-GTAG--TACCCGCCCG--
644 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGCAGT-GCCCGCCCGCCCGCC
3008716 C-C
708 CTC
* * * ** *
3008718 CGCTCGTTTCGTCGGTTGGGCTTAGACATACGGAGTTCA-TTCTAGTCTAAGATCGGTTCAGACT
1 CGCTCGTTTCGTCGGTT-GGCTTAGGCATACGGAGTTCATTTCCAGGCTAAGATCGGACCAGACC
3008782 GAGGGTTG
65 GAGGGTTG
3008790 TTGGTAGCAG
Statistics
Matches: 1321, Mismatches: 130, Indels: 85
0.86 0.08 0.06
Matches are distributed among these distances:
703 1 0.00
704 114 0.09
705 2 0.00
706 2 0.00
707 1 0.00
708 194 0.15
709 317 0.24
710 27 0.02
711 3 0.00
712 2 0.00
713 9 0.01
714 42 0.03
715 37 0.03
716 213 0.16
717 122 0.09
718 121 0.09
719 3 0.00
723 1 0.00
726 108 0.08
727 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (710 bp):
CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGGCTAAGATCGGACCAGACCG
AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCACCGGGCAC
CATCTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGCCGGG
GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCATGTCTGCCAAGTTTGGGGCC
AAAACTTATTTCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAATCGTGAAAAAT
AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGCAGTGCCCGCCCGCCCGCCCTC
Found at i:3010500 original size:201 final size:201
Alignment explanation
Indices: 3010155--3010518 Score: 622
Period size: 201 Copynumber: 1.8 Consensus size: 201
3010145 TCGTCTAGCC
*
3010155 ATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATTGCATTA
1 ATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTA
*
3010220 GCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTTCGCAT
66 GCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTTCGCAT
*
3010285 CCCCTCTCTCTGGCCGACGTGGTGCCCGCCCGCCCATCCGCCCATTTCGTCAGTTGGCTTAGGCA
131 CCCCTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCATCCGCCCATTTCGTCAGTTGGCTTAGGCA
3010350 TGTGCG
196 TGTGCG
* * *
3010356 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
1 ATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTA
* *
3010421 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGT-GCA
66 GCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT-TCGCA
* *
3010485 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
130 TCCCCTCTCTCTGGCCGACGTAGTGCCCGCCCGC
3010519 TCGCTCCCCC
Statistics
Matches: 152, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
201 151 0.99
202 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (201 bp):
ATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTA
GCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTTCGCAT
CCCCTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCATCCGCCCATTTCGTCAGTTGGCTTAGGCA
TGTGCG
Found at i:3010751 original size:26 final size:26
Alignment explanation
Indices: 3010715--3010767 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3010705 GTTGACTTAG
3010715 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3010741 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3010767 G
1 G
3010768 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3013370 original size:26 final size:26
Alignment explanation
Indices: 3013340--3013392 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3013330 GTTGAATTAG
3013340 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
** *
3013366 GCATATGGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3013392 G
1 G
3013393 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3016205 original size:889 final size:864
Alignment explanation
Indices: 3010741--3021198 Score: 10455
Period size: 889 Copynumber: 11.9 Consensus size: 864
3010731 CCCAGTCTAA
* * ** * *
3010741 GCATACGGAGTTTATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACAT-CTTGG
1 GCATACGGAGTTCATTCCCAGTCAAAGATCAAACTGGACCGAGGGTTGCGGCAGCACATGC-TGG
* * **
3010805 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGTCGAAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCG-GGCACCATCGTCGGAGCATCACCGGAG
* *
3010870 AACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGGACATGATGTG
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
3010935 CGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* *
3011000 ACCCCCTTGAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
3011065 AGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** *
3011130 TGCATGCAAAAAAAAAATACAAGGATCAC-GTCTACCAAGTTTGGGGCCAAAACTTTTTCTGAAA
389 TGCATGC-CAACAAAAATACAAGGATCACAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
3011194 AAATTTAAAAAAATCCCAAACCGTAAAAAGTTTCGAAGATCGTGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
3011259 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
3011324 CATTGGCAC-CTAGAAATATGAAGATGTGCCGAAACCAACCTACCA--C-ATCGATCCACGGCTT
583 CATTGGCACAC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * **
3011385 GCGCGTCCCGTCTCTCTAGTCGACGTAGTGCCCGCCTGCCCGCCCACCCGCTCGTTTCGTCAATT
647 GCGCATCCCGTCTCTCTGGCCGACGTAGT----G-C-GCCCG--C-CCCGCTCGTTTCGTCGGTT
* * * * * * *
3011450 GGCTTA-GCATACCGAGGTCATT-TCAGT-AAAGACCGGACCAGA-CTG-GGGTTCGT--CAGTA
703 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATC-GAGGGTT-GTAGCAGCA
* * * *
3011508 -GATCGACAGCAC-AAAAGGGGATCCGATCGATCCTCGA-TCTGCGAAT-CCGCCCCTCTGGCCA
766 GGATCG-CAGCACGCAGAGGGGA-CCGATCGATCC-CGACT-TGCGCATCCCGCCCCTCTGGCCG
3011569 G-T-A-CG-CCGCACGCTC--TTCGT-GG-TGACTTAG
827 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** * * * ** *
3011599 GCAATATGGAGTTCATTCCCAGTTTAAGTTCGACCAAG-CCGAGGGTTGC-GCAGCACATGC-AG
1 GC-ATACGGAGTTCATTCCCAGTCAAAGATCAAACTGGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
3011661 GCATCGCAGCA--TGCTGG-GCCG---TATTCTTTG-C-GGCACCATCGTC---G------C-GA
65 GC-TCG-GGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGCACCATCGTCGGAGCATCACCGGA
* ** ** * * *
3011708 GAACCTAACCGGTAAG-ATTGGGGTTCCGTGTGATCGA--GTGCC--GGGGTGTGCACATATGA-
128 GAACCTGACCGG-CGGCATTGGGGTTCCG-ACGATCGAGGGGGCCGGGGGGTGTGCGCACATGAT
** * *
3011767 GT-CGATGGGTG-TTCTACTTGGCTCTTATTATTGG-CCCCTATCCCTCATC-AATCTTG-GAAC
191 GTGCGATGGGTGCTGGTACTTGGCCCTTA-TATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
* *
3011827 TCACACCCCCTTAAAGAGCCCCCATTTTAGATTTTACAGGTGT-C-GCCAGTAGCCATT-AAGTG
255 TCACACCCCCTTAAAGAG----CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
3011889 TCTAAAATGGGGGACACTTTTTTCAAATGGTCAC-AAGTCTTGTACACTTTGAGTTTTTAGCTGA
316 TCTGAAAT-GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * *
3011953 ATTGTTTTGTGCATGCCAACAAAAATACAAGGATCAC-GTCTACCAAGTTAGCGGCAAAAACTCC
380 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACAGTCTACCAAGTTTGGGGCCAAAACTCC
* * * *
3012017 TTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTC-AATATCGTGAAAAATAGAAAAC
445 TTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* * *
3012081 GAGTCGTCTTGCCATTAAACTTCACGTAAAGGCTTAA-GGACCATTGTATGAATTCACAAGCCAT
510 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*
3012145 -AAAATGGCATTGGCACACAGGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATC
575 AAAAATGGCATTGGCACACA-GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * *
3012209 CACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGC-CCGGCCGCCTGCCCTTTCG-TTCGT
639 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCGCCCGCC-CC-G--C--TCGTTTCGT
* * * * *
3012272 CGATT-GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGGA-TGGA-CTGAGGGTTATGG
698 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-CGGACCGGATC-GAGGGTTGTAG
* * * * * *
3012334 CAGCAGGATCGCAACACGCAAAGGGGACCCGA-CTAATCCCCAACTTGCGCATCTCGACCCTCTG
761 CAGCAGGATCGCAGCACGCAGAGGGGA-CCGATC-GAT-CCCGACTTGCGCATCCCGCCCCTCTG
* * * **
3012398 GCTGGCTGAGTGCCCGCACGCTCGCTTCGTGTTTTGACTTAG
823 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
3012440 GCATACGGAGTTCATTCCCAGTTTAAGCATATGAAGTTCATTCCCAGTCTATGATCAGACTGGAC
1 GCATACGGAGTTCATTCCCAG--T---C--A--AAG---------A-TC----A--A-ACTGGAC
* * *
3012505 CGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCATCGCCGGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCC-GGG
** * * * *
3012570 CACCATCGTCGGAGCATTGCCAGAGAACCTGACCAGCGGCATTGGGGTTCTGACGATCGGGGGGG
104 CACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGG
* **
3012635 CCGGGGGGGTGTGCGCACATGATGTGCGCTGGGTGCTGGTACTTATCCCTTATATTGGCCCCCTA
169 CC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
3012700 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
233 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
3012765 CCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGTACAC
298 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
3012830 TTCGAATTTTTAGCTGAATTTTTTTGTTCATGCCAACAAAAATACAAGGATCAC-GGCTACCAAG
363 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACAGTCTACCAAG
* * * ** *
3012894 TTCGAGGCCAAAACTCCTTTC-AAAAAGATTTTAAAAAATCTTGAACTGTAAAAAGTTTCAAAAA
428 TTTGGGGCCAAAACTCCTTCCGAAAAA-ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* *
3012958 TCGTGAAAAATAGAAAAGGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTG
492 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * ** * * * *
3013023 TATCAATTTACAAGCCATAAAAACGGCATTCGCATGCAGAAATATGAAGATTTTCCTAAAGCCAA
557 TATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAC
* *
3013088 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTATTGCCCGCCCGCC
622 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--CGCCCG-C
* * * *
3013153 CGTCCGCTCGCTTCGTCGGATGGCTTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGG
684 C--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
* * * * * * ** * * *
3013218 ATCGAGGCTTATGGCAGCAGCATTGGTAGCACGCAGAGGGGGACCTGGCCAATCCCTATCTTACG
747 ATCGAGGGTTGTAGCAGCAGGA-TCGCAGCACGCAGA-GGGGACC-GATCGATCCCGA-CTTGCG
* * *
3013283 CATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGAATTAG
808 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
3013340 GCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCGTTCCCAGTCTAAGATCAGACCAAAC
1 GCATACGGAGTTCATTCCCAG--T---CA-A---A----G-----A-TC-AA-A-CTG----GAC
* * *** * *
3013405 CGATGATTATAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCACCGGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCC-GGG
* * * * * *
3013470 CACCATCATCGGAGCATCGCCGGAGAACTTGATCGACGGCATT---G----G-CGATCGGGGGGG
104 CACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGG
* * *
3013527 CCGGGGGGGTGGGCGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCACCTA
169 CC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
3013592 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTG
233 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * ** *
3013657 CTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAAAATTATACAC
298 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
3013722 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACA-TCTACCAAG
363 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACAGTCTACCAAG
* * ** ** **
3013786 TTTGGGGCCAGAACTCCTTTCGAAAAAATTTTAAAAAATCTTGAACCACAAAAAGTTTTGAAAAT
428 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * * * *
3013851 CATGAAAAATAGAAAATGAGTCGTCTTGGCATGAAACTGCGCGTGAAGGCTTAAGGGACCATTGT
493 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
3013916 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACC
558 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACC
* * *
3013981 TACCACCCTATCGATCCACGGCTTGCACATCCCGCCTCTCTGGCCGATGTAGT--GCCCG-CCCG
623 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCGCCCGCCCCG
* * * * *
3014043 CCCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAACATCGGACTGGATC-AC
688 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGA-
* * * * * * *
3014107 GAGTTGCAGTAGCAGGATCGGCAGCATGCAGAGAGGGATCC-AACTGATCCCCGGCTTGTGCATC
752 GGGTTGTAGCAGCAGGATC-GCAGCACGCAGAG-GGGA-CCGATC-GAT-CCCGACTTGCGCATC
* * ** * * * *
3014171 CCACCCCTCTGGCTGATTGAGGGCCCGTACGCTCATTTCATGGGTTGACTTAG
812 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
3014224 GCACACGGAGTTCATTCCCAGTCTACGCATACGAAGTTCATTCCGAGTCTAAGATCAAATCGGAC
1 GCATACGGAGTTCATT-CC---C-A-G--T-C-AA----A----GA-TC-AA-A-C---T-GGAC
* * ** * * * * *
3014289 TGAGGGTTGTGGCAGC-CTATGCTGGG-TATGGTAGGTGCTGGAGCCACATTTTTCTTCACCGGG
40 CGAGGGTTGCGGCAGCAC-ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCC-GG
** *** *
3014352 GCACCATCACCGGAGCATCGTTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTG-GGGG
103 GCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGG
3014416 GCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
168 GCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
3014481 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTG-T
232 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
3014545 AGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
297 -GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
3014610 ACTTCCAGTTTTTAGCTGAATTTTTGTGTGCATGCCAACAAAAATAAAAGGATCACA-TCTACCA
361 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACAGTCTACCA
* * * * * **
3014674 AGTTTGGGGCCAAAACTGCTTCC-AAAAAATTTTTAAAAATCTCGAACTGCAAAAAGTTTTGAAA
426 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
* * *
3014738 ATCGTGAAAAATAGAAAACGAGTCATCTAGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
491 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
** *
3014803 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCATAAATATGAAGATGTGCCTAAACCCA
556 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCA
* * *
3014868 ACTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCTCGCCCG-
621 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--CGCCCGC
* * * * *
3014932 CCCGCTCGCTTCGTCGGATGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGAT
684 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAT
* * * * *
3014997 CGAGGGTT-TCGACAGCAAGATCAGCAACACGCAGAGGGGGACCCGATCGATCCTCGGCTTGCTC
749 CGAGGGTTGTAG-CAGCAGGATC-GCAGCACGCAGA-GGGGA-CCGATCGATCC-CGACTTGCGC
* * * * * * *
3015061 ATCCCGCTCCTCTGGCTGCCTAAGTGCCCGCACACTCGTTTCGTGAGTTGACTTAG
809 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * ** ** **
3015117 GCTTATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGAAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCAAAGATCAAACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
3015182 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCC-GGGCACCATCGTCGGAGCATCACCGGAGA
* *
3015247 ACCTGACCGGCGGTATTGGGGTTCCGACGATC-AGGGGGCCGGAGGGGTGGGCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGG-GGGGTGTGCGCACATGATGTG
* * *
3015311 CGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
3015376 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
3015441 GGGGACACTTTTTTCAAATGGTCACAAAAAAT-TTGTACAC-TCGAG-TTTTAGCGTGAATTTGT
324 GGGGACACTTTTTTCAAATGGTCAC--AAAATCTTGTACACTTCGAGTTTTTAGC-TGAATTT-T
* * * * ** *
3015503 TTATG-GCATGCCAA-TAAAATATAAGGATCCCAG-CTACCATGTTTGGGAACAAAAATGCCTTC
385 TT-TGTGCATGCCAACAAAAATACAAGGATCACAGTCTACCAAGTTTGGGGCCAAAACT-CCTTC
* * *
3015565 CGAAAAAATTTTTAAAAAATCCCTAACCCATAAAAAGAGTTGTCAAAAAATC-TGATGAAAGTAG
448 CGAAAAAA-TTTTAAAAAATCCCGAA-CCGT-AAAA-AGTT-TC-AAAAATCGTGA--AAAATAG
* *
3015629 AAAATGAAGTCGGCTTGCCATGAAACTTCACGTGAAGGCCTTAAGGGACCCATTGTAATGAATTT
505 AAAACG-AGTCGTCTTGCCATGAAACTTCACGTGAAGG-CTTAAGGGA-CCATTGT-ATGAATTT
** * *
3015694 ACAAGCCATAAACAATGGCATGTTGGCACGTAGAAATATGAA-ATATGCCTAAAACCCACCGACC
566 ACAAGCCATAAA-AATGGCA--TTGGCACACAGAAATATGAAGATGTGCCT-AAACCCACCTACC
* * * * *
3015758 ACCCTATCGGATCCGCGGCCTTGCGCATCCTGCCTCTCTGGCCGGCGT-GTAG-G-CCGACCCGC
627 ACCCTATC-GATCCACGG-CTTGCGCATCCCGTCTCTCTGGCCGACGTAGT-GCGCCCGCCCCGC
* * * * *
3015820 TTGTTTCGTCGG-TGGCTCAGGCATA-GGAGTTCATTCCCAGTTTTAAGATCGGATCAGATCGAG
689 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG-TCTAAGATCGGACCGGATCGAG
* * **
3015883 GGTTGTAGCGGGTAGGATCGGCCAGCACGCAGAGGGGACCAAGGGGCCGATGCCCTGAACGTTGC
753 GGTTGTAGC-AGCAGGATC-G-CAGCACGCAGAGGGGACC----GATCGAT-CCC-G-AC-TTGC
* * * *
3015948 GCATCCCGCCCCTCTAGCCGGCTGAGTGCCCGCATGCTCGTTTCGTGGTTTGACTTAG
807 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
3016006 GCATACGGAGTTCATTCCCAGTCAAAGATCAAACTGGACCGAGGTTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCAAAGATCAAACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
3016071 CTCGAGCATATGCTGGTGCCGCATTTTTCTTCGTCGGTGCACCATCGTCGGAGCATCACCGGATA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGG-GCACCATCGTCGGAGCATCACCGGAGA
* * *
3016136 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCACACACGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGC
** *
3016201 GATGGGTGCTACTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* *
3016266 CCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
3016331 GGGACACTTTTTTCAAATGGTCAAAAAATCTTGTAAACCTT-GAGTTTTTAGTTGAATGTTTTTG
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-CTTCGAGTTTTTAGCTGAATTTTTTTG
* * **
3016395 TGCATGCCAACAAAAATACAAGGATCACA-TCTACAAAGTTTGGGGCCAAAACTCGTTGTGAAAA
389 TGCATGCCAACAAAAATACAAGGATCACAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
3016459 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTTGAAAAATAGAAAATGAGTCATC
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG-TGAAAAATAGAAAACGAGTCGTC
** *
3016524 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAACAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
3016589 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
583 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
3016654 CGCAT-CCGTCTCTTCTAGCCGACGTAGTGTCGCCCGCCCGCCCCTCGTTTCGTCGGTTGGCTTA
648 CGCATCCCGTCTC-TCTGGCCGACGTAGTG-CGCCCG-CC-CCGCTCGTTTCGTCGGTTGGCTTA
* * * * *
3016718 GGCATATGGAGTTCATTCCCAGTCTAAGATCGGATC-GAACTGAGGGTTGCAGCAGTAGGATCGG
709 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATC-GAGGGTTGTAGCAGCAGGATC-G
* * * *
3016782 CAGCACGTAGAGGGGACCCGATCGATCACCGACTTGCGCATCCCGCCCTTCTGGGCGGCTAAGCG
772 CAGCACGCAGAGGGGA-CCGATCGATC-CCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* *
3016847 CCCGCACGCTCGTTTCATGTGTTGACTTAG
835 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
3016877 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGGACCGAGGCTTGTGGCAGCACATG
1 GCATACGGAGTTCATTCCCAGTC--A-A--AGATCAAACTGGACCGAGGGTTGCGGCAGCACATG
* * * * **
3016942 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAGCATCGCCGAAGCATCGTC
61 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CCGGGCACCATCGTCGGAGCATCACC
* * * * * *
3017007 GGAGAACCTGGCCGACGGCATTAGGGTTTCGATGATCGAGGGGGTCGGGGAGGTGTGCGCACATG
125 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGG-GGTGTGCGCACATG
* *
3017072 ATGTGC-A---GT--AGGTA------CC----A---G-----TA-CCTCTCATCAAACCTAGAGA
189 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC-CTCATCAAACCTTGAGA
* * * *
3017112 ACTCACATCGCCTTAAAAAGCATTTGAGATTTTACAGCTTTGCTGCCAGTAGCCATTAAAGTGTC
253 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * *
3017177 TAAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATG
318 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
3017242 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACA-TCTACCAAGTTTGGGGCCAAAACTCGTTG
383 TTTTTGTGCATGCCAACAAAAATACAAGGATCACAGTCTACCAAGTTTGGGGCCAAAACTCCTTC
** **
3017306 CGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATAAG
448 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* ** *
3017371 TCATCTTGCCATGAAACTTCACGTGAAGG-TTAAGGGACCATTGTATGAATTTACAAGAAACAAA
513 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
3017435 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
578 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
3017500 GCTTGCGCATCTCGTTTCTTTGGCCGGCATAGTGTCTGCCCGCTCGTCCGCCCGCCCGCTCGTTT
643 GCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G--TG--CG--C--CCG--C-CCCGCTCGTTT
* * * * * *
3017565 TGTCGGTTGGCTTAGGCATACGGAGTTCGTTCCCAGTCTAAGATCAGACCAG-TCCGAAGGATGT
695 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAT-CGAGGGTTGT
* * * * * * *
3017629 GGCAGCAGGATCAACAACACGTAGAGGGGCACCAATCGATCCCCGGCTTGCGCATCCCGCCCCTA
759 AGCAGCAGGATC-GCAGCACGCAGAGGGG-ACCGATCGAT-CCCGACTTGCGCATCCCGCCCCTC
* * * *
3017694 TGGCCGGTTGAGCGCCTGCACGTTCGTTTCGTGGGTTAACTTAG
821 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
3017738 GCATGCAGAATTCATTTCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAAATCGGATCGGAC
1 GCATACGGAGTTCATTCCCAGTC--A--A-----AG---------A-TC--AAA-C---T-GGAC
* *
3017803 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCTGCGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCG-GG
* * **
3017868 TACCATCGTCGGAGCATCACCGGAGAACCTGACCAGCCACATTGGGGTTCCGACGATCG-GGTGG
104 CACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGG-GG
*
3017932 GCCGGGGGGTGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
168 GCC---GGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
3017997 CCTATCCCTCATCAAACCTTGAAAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTT
229 CCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
3018062 ACTGCCAGTAGCTATTAAAGTGTCTGTAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
294 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * * *
3018127 ACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCA-TGTCTAT
359 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACAGTCTAC
* * * * *
3018191 GAAGTTTGGGGCCAAAACGCCTTCCGAAAAAATTTAAAAAATATCCCGAACTGCAAAAAGTTTCA
424 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA-ATCCCGAACCGTAAAAAGTTTCA
* *
3018256 AAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAATGCTTAAGGGACC
488 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * ** *
3018321 ATTGTATGAATTTAAAACCCAT-AAAATGGCATTGGCACGTAGAAATATGAAGATTTGCCTAAAC
553 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
* * * *
3018385 CCACCTACCTCCC-ATCGATCCACGGCTTGCACATCTCGTCTCTCTGGGCGACGTAGTGCCCGCC
618 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--CGCC
* * * *
3018449 CGCCCGCCCGCTCATTTCTTCGGTTGGCATAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
681 CG--C-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* *** * * ** * *
3018514 CCGGATAGAGGGTTACGGCTGTAGGATCAATAGCACGTAGAGGGGGACCCGGTCGATGCCCGACT
743 CCGGATCGAGGGTTGTAGCAGCAGGATC-GCAGCACGCAGA-GGGGA-CCGATCGAT-CCCGACT
* * *
3018579 TGCGAATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
804 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * ** * * * *
3018640 GCATACAGAGTTCATTCCCAGTCTAAGATCGGA-TCAGATCGAGGGTTACAGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCAAAGATCAAACT-GGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * *
3018704 ACTCGAGCAAGTGCTGGTGCCGTATTTTTCTTCACCGGG-------G-C--ACCATCACCGGAGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGCACCATCGTCGGAGCATCACCGGAGA
* * * * * * * *
3018759 ACCTGACCGACGACATCGGGGAT-CTAGCGATCG-GGGGGTCGGGGGGTGTGTGAACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
3018822 CGATGGGTGCTGGCACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
3018887 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
3018951 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
3019015 TGCATGCCAACAAAAATACAAGGATCAC-GTCTGCC-AGTTTGGGGCCAAAACTCTTTCCGAAAA
389 TGCATGCCAACAAAAATACAAGGATCACAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
** * * *
3019078 AA-TTTAAAAAATCCAAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
3019142 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAAATTAGAAGCCATAAAAATGGT
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
3019207 TTTGGCACATAGAAATATGAAGATGTGCCTAAAGCCACCTGCCACCCTATCGATCCACGGCTTGC
584 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
3019272 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCCGCCCGCCCGCTCGTTTTCGTCGG-TG
649 GCATCCCGTCTCTCTGGCCGACGTAGTG--CG----CCCG--C-CCCGCTCG-TTTCGTCGGTTG
**
3019336 GCTTAGGGCATACGGAAGTTCATTTGCCCCAGTCTAAGATCATGGACCTGGA-CTGA-GGTTACA
704 GCTTA-GGCATACGG-AGTTCA-TT--CCCAGTCTAAGATC--GGACC-GGATC-GAGGGTTGTA
* * * * * * *
3019399 GTAGCAGGATCGGCAGCATGTAGAGGGGGACTCGATCGATCCCCAACTTGCCCATGCCGCCTCTC
760 GCAGCAGGATC-GCAGCACGCAGA-GGGGAC-CGATCGAT-CCCGACTTGCGCATCCCGCCCCTC
* * * * * * * *
3019464 TAGTCGGCTCAGCACCCGTACGCTTGTTTCATTGGTTGACTTAG
821 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
3019508 GCGTACGGAGTTCATTACCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCAGATTGGAT
1 GCATACGGAGTTCATTCCCAGTC--A--A-----AG---------A-TC-AA-A-C----TGGAC
* * *
3019573 CGAGGGTTGCGACAGCAAATGCTGGGC-CTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTC-GGGCATGTGCTGGTGCCGCATTTTTCTTCGCCG-G
* * * ** * * *
3019637 GCACGATAGTCGGAGCATCACCGGAGAACCTGACCAGTAGCATTGGAGTACCGACGAT-GGGGGG
103 GCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGG
*
3019701 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCC-TATATTGGGCCCCT
168 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC-CCTTATATTGGCCCCCT
* *
3019765 ATCCCTCATCAAATCTCGAGAACTCACACCCCCTTAAAGCA-CATTTGAGATTTTACAGGTTTGC
232 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG-AGCATTTGAGATTTTACAGGTTTGC
*
3019829 TGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
296 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * * * *
3019894 ACTTCGATTTTTTTA-CGGCATTTTTTTCTGCACGCCAACAAAAATACAAGGATCA-TGTCTACC
361 ACTTCGA-GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACAGTCTACC
**
3019957 AAGTTTGGGGCCAAAACTCC-TCCTGAAAAAATTTTAAAAAATCCCGAAAGGTAAAAAGTTTCAA
425 AAGTTTGGGGCCAAAACTCCTTCC-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
* * *
3020021 AAATCATG-AAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCCTTAAGGGACC
489 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG-AAGGCTTAAGGGACC
* * * * *
3020085 ATTGTATGAATTTATAGGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTACCT-AAC
553 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
3020149 CCACCTACCACCCTATCGAT-CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTC
618 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----G--
* *
3020213 CGCCCGCCCGTCTGCTCGCCCGCCCGCTCATTTCATCGGTTGGCTTTGGCATACGGAGTTCATTC
677 CGCCCGCCC--C-GCT--------CG----TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * ** ** * *
3020278 CCAATCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCAAAAGCACGCAGAAAGGAACC
727 CCAGTCTAAGATCGGACCGGATCGAGGGTTGTAGCAGCAGGATC-GCAGCACGCAG-AGGGGACC
* * * * *
3020343 TG-GCTGATCCCCGGCTTGCGCATCCCGTCCCTCTGGCCGGCTGAGCGCCCACACACTCGTTTCG
790 -GATC-GAT-CCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
*
3020407 TGGGTTAACTTAG
852 TGGGTTGACTTAG
* *
3020420 GCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGAACTAGAC
1 GCATACGGAGTTCATTCCCAG--T---CA-A---AG---------A-TC----A---AACTGGAC
* * * * *
3020485 CGAGGGTTGCGGTAGCACATGCTAGGCTCGAGCATGTGCTGGTGTCAG-ATTTTTCTTCGTCGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CCGCATTTTTCTTCGCCGGG
** * * *
3020549 ACACCATCCCCGGAGCATCATCGGAAAACCTGACCGGCGGCATTGGGATTCCGACGATCG-GGGG
104 -CACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGG
* * * *
3020613 GCCGGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACCTGGCTCTTATATTGGCCCCCTG
168 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
3020678 TCCCTCATCAAACCTTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTACTG
233 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
3020743 CCTGTAGCCATTAAAGTGTCTGTAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACAC
298 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
3020807 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCAC-GTCTACCAAG
363 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACAGTCTACCAAG
* *
3020871 TTTAGGGCCAAAACTCCATT--GAAAAAAGTTTTAAAAAATCCCGAACCGTAAAATGTTTCAAAA
428 TTTGGGGCCAAAACTCC-TTCCGAAAAAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
* * *
3020934 ATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTCACGTGAAAGCTTAAGGGACCATT
491 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * *
3020999 GTATGAATCTACAAGCCACAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCA
556 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCA
* * * *
3021064 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTATCTCTAGCCGGCGTAATGCCCGTCCGC
621 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--CG-CC-C
* * * * * * *
3021129 CCACCCGCTCACTCATTTCATCGGTTGGCTTAGGCATACAGAGTTCGTTCCCACTCTAAGATCGA
682 GC-CCCG----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
3021194 ACCGG
742 ACCGG
3021199 CCGGGGGGTG
Statistics
Matches: 8155, Mismatches: 989, Indels: 869
0.81 0.10 0.09
Matches are distributed among these distances:
822 1 0.00
823 3 0.00
824 1 0.00
825 3 0.00
826 6 0.00
827 24 0.00
828 24 0.00
829 67 0.01
830 64 0.01
831 109 0.01
832 124 0.02
833 80 0.01
834 17 0.00
835 21 0.00
836 15 0.00
837 10 0.00
838 4 0.00
839 29 0.00
840 26 0.00
841 10 0.00
842 1 0.00
846 1 0.00
849 15 0.00
851 119 0.01
852 62 0.01
853 248 0.03
855 105 0.01
856 66 0.01
857 85 0.01
858 67 0.01
859 76 0.01
860 140 0.02
861 197 0.02
862 23 0.00
863 6 0.00
864 8 0.00
865 44 0.01
866 16 0.00
867 48 0.01
868 435 0.05
869 39 0.00
870 16 0.00
871 93 0.01
872 10 0.00
873 34 0.00
874 26 0.00
875 49 0.01
876 211 0.03
877 58 0.01
878 74 0.01
879 54 0.01
880 31 0.00
881 68 0.01
882 178 0.02
883 116 0.01
884 237 0.03
885 51 0.01
886 66 0.01
887 32 0.00
888 41 0.01
889 622 0.08
890 299 0.04
891 30 0.00
892 486 0.06
893 236 0.03
894 191 0.02
895 82 0.01
896 103 0.01
897 31 0.00
898 57 0.01
899 20 0.00
900 194 0.02
901 144 0.02
902 92 0.01
903 2 0.00
904 5 0.00
905 182 0.02
906 53 0.01
907 90 0.01
908 88 0.01
909 348 0.04
910 139 0.02
911 245 0.03
912 437 0.05
913 41 0.01
914 15 0.00
915 4 0.00
916 3 0.00
917 8 0.00
918 18 0.00
919 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (864 bp):
GCATACGGAGTTCATTCCCAGTCAAAGATCAAACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGCACCATCGTCGGAGCATCACCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCGCCCGCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTAGCAGCAGGATCGCAGCACGCA
GAGGGGACCGATCGATCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGACTTAG
Found at i:3017777 original size:26 final size:26
Alignment explanation
Indices: 3017738--3017789 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
3017728 GTTAACTTAG
*
3017738 GCATGCAGAATTCATTTCCAGTCTAA
1 GCATGCAGAATTCATTCCCAGTCTAA
* *
3017764 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATGCAGAATTCATTCCCAGTCTAA
3017790 AATCGGATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATGCAGAATTCATTCCCAGTCTAA
Found at i:3020456 original size:26 final size:26
Alignment explanation
Indices: 3020420--3020472 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3020410 GTTAACTTAG
3020420 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
3020446 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3020472 G
1 G
3020473 ATCGAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3020605 original size:912 final size:909
Alignment explanation
Indices: 3018786--3021136 Score: 3196
Period size: 912 Copynumber: 2.6 Consensus size: 909
3018776 GGGGATCTAG
* * * * *
3018786 CGATCGGGGGGTCGGGGGGTGTGTGAACATGATGTGCGATGGGTGCTGGCACTTGGCCCCTATAT
1 CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCCTATAT
3018851 TGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
66 TGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
3018916 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATGGGGACACTTTTTTCAAATGGTCACAAAAT
131 AGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAATGGGGACACTTTTTTCAAATGGTCACAAAAT
*
3018981 CTTGTACACTTCGAGTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
196 CTTGTACACTTCGATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * *
3019046 TGCC-AGTTTGGGGCCAAAACTCTTTCC-GAAAAAA-TTTAAAAAAT-CCAAAACCGCAAAAAGT
261 TACCAAGTTTGGGGCCAAAACTC-CTCCTGAAAAAATTTTAAAAAATCCCGAAA-CGTAAAAAGT
* * *
3019107 TTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGG
324 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGG
* * ** * *
3019172 GACCATTGTATGAAATTAGAAGCCATAAAAATGGTTTTGGCACATAGAAATATGAAGATGTGCCT
389 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCT
* *
3019237 AAAGCCACCTGCCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--
454 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
* * *
3019300 C--CCGCCCTCCCGCCCGCCCGCTCGTTTTCGTCGGTGGCTTAGGGCATACGGAAGTTCATTTGC
519 CGTCCGCCCACCCGCCCGCCCGCCCGTTTTCATCGGTGGCTTAGGGCATACGGAAGTTCATTT-C
* * *** * * ** *
3019363 CCCAGTCTAAGATCATGGACCTGGACTGAGGTTACAGTAGCAGGATCGGCAGCATGTAGAGGGGG
583 CCCAATCTAAGATCA-GGACCTGGACTGAGGTTACAGCAGCAGGATCAAAAGCACGCAGAAAGGA
* * ** * *
3019428 ACTCGATCGATCCCCAACTTGCCCATGCCGCCTCTCTAGTCGGCTCAGCACCCGTACGCTTGTTT
647 ACTCGATCGATCCCCAACTTGCCCATCCCGCCTCTCTAGCCGGCTCAGCACCCACACACTCGTTT
* * * * *
3019493 CATTGGTTGACTTAGGCGTACGGAGTTCATTACCAGTCTAAGCATGCGGAGTTCATTCCCAGTCT
712 CATGGGTTAACTTAGGCATACAGAGTTCATTACCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * * *
3019558 AAGATCAGATTGGATCGAGGGTTGCGACAGCAAATGCTGGGCCTGGGCATGTGCTGGTGCCGCAT
777 AAGATCAGACTAGACCGAGGGTTGCGACAGCAAATGCTAGGCCTGAGCATGTGCTGGTGCAGCAT
* ** * *
3019623 TTTTCTTCGTCGAGGCACGATAGTCGGAGCATCACCGGAGAACCTGACCAGTAGCATTGGAGTAC
842 TTTTCTTCGTCGAGGCACCATACCCGGAGCATCACCGGAAAACCTGACCAGCAGCATTGGAGTAC
3019688 CGA
907 CGA
*
3019691 CGATGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCCTATAT
1 CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCCTATAT
* * *
3019756 TGGGCCCCTATCCCTCATCAAATCTCGAGAACTCACACCCCCTTAAAGCA-CATTTGAGATTTTA
66 TGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG-AGCATTTGAGATTTTA
3019820 CAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
130 CAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTG-AATGGGGACACTTTTTTCAAATGGTCACAAA
* * * *
3019885 ATCTTGTACACTTCGATTTTTTTA-CGGCATTTTTTTCTGCACGCCAACAAAAATACAAGGATCA
194 ATCTTGTACACTTCGA--TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* *
3019949 TGTCTACCAAGTTTGGGGCCAAAACTCCTCCTGAAAAAATTTTAAAAAATCCCGAAAGGTAAAAA
257 CGTCTACCAAGTTTGGGGCCAAAACTCCTCCTGAAAAAATTTTAAAAAATCCCGAAACGTAAAAA
*
3020014 GTTTCAAAAATCATG-AAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCCTTA
322 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAG-CTTA
* * * *
3020078 AGGGACCATTGTATGAATTTATAGGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTA
386 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTG
3020143 CCT-AACCCACCTACCACCCTATCGAT-CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
451 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
* *
3020206 GCCCGTCCGCCCGCCCGTCTGCTCGCCCGCCCGCTCATTTCATCGGTTGGCTT-TGGCATACGG-
516 GCCCGTCCGCCCACCCG-C--C-CGCCCGCCCG-T--TTTCATCGG-TGGCTTAGGGCATACGGA
* *
3020269 AGTTCA-TT-CCCAATCTAAGATCA-GACC-GGA-TCGAGGGTTGCGGCAGCAGGATCAAAAGCA
573 AGTTCATTTCCCCAATCTAAGATCAGGACCTGGACT-GA-GGTTACAGCAGCAGGATCAAAAGCA
* * ** * * * *
3020329 CGCAGAAAGGAACCTGGCT-GATCCCCGGCTTGCGCATCCCGTCC-CTCTGGCCGGCTGAGCGCC
636 CGCAGAAAGGAA-CTCGATCGATCCCCAACTTGCCCATCCCG-CCTCTCTAGCCGGCTCAGCACC
* *
3020392 CACACACTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGT
699 CACACACTCGTTTCATGGGTTAACTTAGGCATACAGAGTTCATTACCAGTCTAAGCATACGGAGT
* ** *
3020457 TCATTCCTAGTCTAAGATC-GAACTAGACCGAGGGTTGCGGTAGCACATGCTAGG-CTCGAGCAT
764 TCATTCCCAGTCTAAGATCAG-ACTAGACCGAGGGTTGCGACAGCAAATGCTAGGCCT-GAGCAT
* *
3020520 GTGCTGGTGTCAG-ATTTTTCTTCGTCG-GGACACCATCCCCGGAGCATCATCGGAAAACCTGAC
827 GTGCTGGTG-CAGCATTTTTCTTCGTCGAGG-CACCATACCCGGAGCATCACCGGAAAACCTGAC
* * *
3020583 CGGCGGCATTGG-GATTCCGA
890 CAGCAGCATTGGAG-TACCGA
* * *
3020603 CGATCGGGGGGCCGGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACCTGGCTCTTATAT
1 CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCCTATAT
* * *
3020668 TGGCCCCCTGTCCCTCATCAAACCTTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAA
66 TGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
3020733 AGGTTTACTGCCTGTAGCCATTAAAGTGTCTGTAATGGGGACAC-TTTTTCAAATGGTCACAAAA
131 AGGTTTGCTGCCTGTAGCCATTAAAGTGTCTG-AATGGGGACACTTTTTTCAAATGGTCACAAAA
*
3020797 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCACG
195 TCTTGTACACTTCGA-TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * *
3020862 TCTACCAAGTTTAGGGCCAAAACTCCAT--TGAAAAAAGTTTTAAAAAATCCCGAACCGTAAAAT
259 TCTACCAAGTTTGGGGCCAAAACTCC-TCCTGAAAAAA-TTTTAAAAAATCCCGAAACGTAAAAA
* *
3020925 GTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTCACGTGAAAGCTTAA
322 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAA
* *
3020990 GGGACCATTGTATGAATCTACAAGCCACAAAAATGGCATTGGCACACAAAAATATGAAGATGTGC
387 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGC
* * * *
3021055 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTATCTCTAGCCGGCGTAATG
452 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
3021120 CCCGTCCGCCCACCCGC
517 CCCGTCCGCCCACCCGC
3021137 TCACTCATTT
Statistics
Matches: 1279, Mismatches: 130, Indels: 67
0.87 0.09 0.05
Matches are distributed among these distances:
905 150 0.12
906 48 0.04
907 83 0.06
908 91 0.07
909 95 0.07
910 20 0.02
911 221 0.17
912 458 0.36
913 57 0.04
914 15 0.01
915 9 0.01
916 3 0.00
917 6 0.00
918 17 0.01
919 6 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (909 bp):
CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCCTATAT
TGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
AGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
TACCAAGTTTGGGGCCAAAACTCCTCCTGAAAAAATTTTAAAAAATCCCGAAACGTAAAAAGTTT
CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGA
CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAA
ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG
TCCGCCCACCCGCCCGCCCGCCCGTTTTCATCGGTGGCTTAGGGCATACGGAAGTTCATTTCCCC
AATCTAAGATCAGGACCTGGACTGAGGTTACAGCAGCAGGATCAAAAGCACGCAGAAAGGAACTC
GATCGATCCCCAACTTGCCCATCCCGCCTCTCTAGCCGGCTCAGCACCCACACACTCGTTTCATG
GGTTAACTTAGGCATACAGAGTTCATTACCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
TCAGACTAGACCGAGGGTTGCGACAGCAAATGCTAGGCCTGAGCATGTGCTGGTGCAGCATTTTT
CTTCGTCGAGGCACCATACCCGGAGCATCACCGGAAAACCTGACCAGCAGCATTGGAGTACCGA
Found at i:3021722 original size:585 final size:585
Alignment explanation
Indices: 3020612--3021783 Score: 2299
Period size: 585 Copynumber: 2.0 Consensus size: 585
3020602 ACGATCGGGG
3020612 GGCCGGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACCTGGCTCTTATATTGGCCCCCT
1 GGCCGGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACCTGGCTCTTATATTGGCCCCCT
3020677 GTCCCTCATCAAACCTTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTACT
66 GTCCCTCATCAAACCTTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTACT
3020742 GCCTGTAGCCATTAAAGTGTCTGTAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACAC
131 GCCTGTAGCCATTAAAGTGTCTGTAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACAC
*
3020807 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGT
196 TTCGAGTTTTGAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGT
3020872 TTAGGGCCAAAACTCCATTGAAAAAAGTTTTAAAAAATCCCGAACCGTAAAATGTTTCAAAAATC
261 TTAGGGCCAAAACTCCATTGAAAAAAGTTTTAAAAAATCCCGAACCGTAAAATGTTTCAAAAATC
*
3020937 TTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTCACGTGAAAGCTTAAGGGACCATTGTA
326 CTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTCACGTGAAAGCTTAAGGGACCATTGTA
3021002 TGAATCTACAAGCCACAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCT
391 TGAATCTACAAGCCACAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCT
3021067 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTATCTCTAGCCGGCGTAATGCCCGTCCGCCCA
456 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTATCTCTAGCCGGCGTAATGCCCGTCCGCCCA
*
3021132 CCCGCTCACTCATTTCATCGGTTGGCTTAGGCATACAGAGTTCGTTCCCACTCTAAGATCGAACC
521 CCCGCTCACTCATTTCATCGATTGGCTTAGGCATACAGAGTTCGTTCCCACTCTAAGATCGAACC
*
3021197 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACCTGGCTCTTATATTGGCCCCCT
1 GGCCGGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACCTGGCTCTTATATTGGCCCCCT
3021262 GTCCCTCATCAAACCTTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTACT
66 GTCCCTCATCAAACCTTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTACT
3021327 GCCTGTAGCCATTAAAGTGTCTGTAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACAC
131 GCCTGTAGCCATTAAAGTGTCTGTAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACAC
3021392 TTCGAGTTTTGAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGT
196 TTCGAGTTTTGAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGT
3021457 TTAGGGCCAAAACTCCATTGAAAAAAGTTTTAAAAAATCCCGAACCGTAAAATGTTTCAAAAATC
261 TTAGGGCCAAAACTCCATTGAAAAAAGTTTTAAAAAATCCCGAACCGTAAAATGTTTCAAAAATC
*
3021522 CTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAAGTTCACGTGAAAGCTTAAGGGACCATTGTA
326 CTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTCACGTGAAAGCTTAAGGGACCATTGTA
3021587 TGAATCTACAAGCCACAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCT
391 TGAATCTACAAGCCACAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCT
3021652 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTATCTCTAGCCGGCGTAATGCCCGTCCGCCCA
456 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTATCTCTAGCCGGCGTAATGCCCGTCCGCCCA
3021717 CCCGCTCACTCATTTCATCGATTGGCTTAGGCATACAGAGTTCGTTCCCACTCTAAGATCGAACC
521 CCCGCTCACTCATTTCATCGATTGGCTTAGGCATACAGAGTTCGTTCCCACTCTAAGATCGAACC
3021782 GG
1 GG
3021784 ACTGAGGGTT
Statistics
Matches: 582, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
585 582 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (585 bp):
GGCCGGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACCTGGCTCTTATATTGGCCCCCT
GTCCCTCATCAAACCTTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTACT
GCCTGTAGCCATTAAAGTGTCTGTAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACAC
TTCGAGTTTTGAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGT
TTAGGGCCAAAACTCCATTGAAAAAAGTTTTAAAAAATCCCGAACCGTAAAATGTTTCAAAAATC
CTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTCACGTGAAAGCTTAAGGGACCATTGTA
TGAATCTACAAGCCACAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCT
ACCACCCTATCGATCCACGGCTTGCGCATCCCGTATCTCTAGCCGGCGTAATGCCCGTCCGCCCA
CCCGCTCACTCATTTCATCGATTGGCTTAGGCATACAGAGTTCGTTCCCACTCTAAGATCGAACC
Found at i:3022111 original size:143 final size:143
Alignment explanation
Indices: 3021853--3022115 Score: 377
Period size: 143 Copynumber: 1.8 Consensus size: 143
3021843 ACCGGGGCAC
* *
3021853 CATCGCTGGAGAACATGACCGGCAGCAATGGGGTTCCGACAATCGGGGGGGCCGAAGGAGTGTGC
1 CATCGCCGGAGAACATGACCGGCAGCAATAGGGTTCCGACAATCGGGGGGGCCGAAGGAGTGTGC
* * *
3021918 ATACATGATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCGTCGGGGT
66 ACACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCGTCGGGGT
3021983 GCCATTGTCGGAG
131 GCCATTGTCGGAG
* * * * *
3021996 CATCGCCGGAGAACCTGACCGGCGGCATTAGGGTTCC-AGCGATCGGGGGGGCC-AAGGGGGTGT
1 CATCGCCGGAGAACATGACCGGCAGCAATAGGGTTCCGA-CAATCGGGGGGGCCGAA-GGAGTGT
* * *
3022059 GCGCACATGATGTACGGTGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCT
64 GCACACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCT
3022116 CATCAAACCT
Statistics
Matches: 105, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
142 3 0.03
143 102 0.97
ACGTcount: A:0.17, C:0.25, G:0.35, T:0.23
Consensus pattern (143 bp):
CATCGCCGGAGAACATGACCGGCAGCAATAGGGTTCCGACAATCGGGGGGGCCGAAGGAGTGTGC
ACACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCGTCGGGGT
GCCATTGTCGGAG
Found at i:3025322 original size:709 final size:692
Alignment explanation
Indices: 3023970--3025445 Score: 2236
Period size: 709 Copynumber: 2.1 Consensus size: 692
3023960 CCGACTGCCT
* * *
3023970 GCCCGCTCATTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTTCAAGTCTAAGATCAGACCAG
1 GCCCGCTC-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA-TTCAAGTCTAAGATCAGATCAG
* *
3024035 ACCGA-GGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTTATGTCCATTTTTCTTCACCGGG
64 ACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGATGTCCAATTTTCTTCACCGGG
* * *
3024099 GCACCATCACTGGAGAAGCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGCGGGGGGTGGCGC
129 GCACCATCACTGGAGAACCTGACCGACGGCATTAGGGTTCCGGCGATCGGGGCGGGGGGTGGCGC
*
3024164 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
194 ACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
3024229 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCACTAAAG
259 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCACTAAAG
* *
3024294 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG
324 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTG
* * * * * *
3024359 AATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCTAGTTTGGGGCCAAAACTCC
389 AATTTTTTTGTGCATGCCAAAAAAAATACAACGATCACGTCTACCAAGTTTAGGGCCAAAACTCA
** * *
3024424 TTCCGAAAAAATTTTAAAAAATCTTGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
454 TTCCGAAAAAATTTTAAAAAATCTCAAACTACAAAAAGCTTCAAAAATCGTGAAAAATAGAAAAC
* * ** *
3024489 GAGTTGTCTTGCCATTAAACTTCACGTGACGGCTTAAGGGACCATTGCATGAATTTGCAAGCCAT
519 GAGTCGTCTTGCCATCAAACTTCACGTGAAAGCTTAAGGGACCATTGCATGAATTTACAAGCCAT
* *
3024554 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
584 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACATACCACCCTATCGATCC
* * *
3024619 ACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCC
649 ACAGCTTGCGCATCCCGTCTCTCTGGCCCGCGTAGT--------ACCCGCCC
* * *
3024671 GTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGTGTTCATTCCCAGTCTAAGATCAGATCAGA
1 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CAAGTCTAAGATCAGATCAGA
* * * * ***
3024736 CCGAGGGTTGCAGCAGCACATGCTTGGCTTGGGCATGTGCTGGTGTTGCAATTTTCTTTGTCGGG
65 CCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGATG-TCCAATTTTCTTCACCGGG
* * **
3024801 GCACCATC-GTCGGAGAACCTGACTGGTGGCATTAGGGTTCCGGCGATCGAGGGGGCCGAGGGGG
129 GCACCATCACT-GGAGAACCTGACCGACGGCATTAGGGTTCCGGCGATC---GGGG-CG-GGGGG
*
3024865 TGCGCGCATAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
188 TG-GCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
3024930 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTC
252 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCC
*
3024995 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTC
317 ACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTC
3025060 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACAACGATCACGTCTACCAAGTTTAGGGCC
382 TTAGCTGAATTTTTTTGTGCATGCC-AAAAAAAATACAACGATCACGTCTACCAAGTTTAGGGCC
3025125 AAAACTCATTCCGAAAAAATTTTAAAAAATCTCAAACTACAAAAAGCTTCAAAAATCGTGAAAAA
446 AAAACTCATTCCGAAAAAATTTTAAAAAATCTCAAACTACAAAAAGCTTCAAAAATCGTGAAAAA
* *
3025190 TAGAAAACGAGTCGTCTTGCCATCAAACTTCACGTGAAAGCTTAAGGGACCATTGTATTAATTTA
511 TAGAAAACGAGTCGTCTTGCCATCAAACTTCACGTGAAAGCTTAAGGGACCATTGCATGAATTTA
* *
3025255 CAAGCCATTAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACATACCGCCCT
576 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACATACCACCCT
3025320 ATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCCGCGTAGTACCCGCCC
641 ATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCCGCGTAGTACCCGCCC
* * * *
3025372 GCCCGCTCGTTTCGTCGGTTGGCTTAGACATACGGAGTTCATTCTAGTCTAAGATCGGTTCAGAC
1 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCAAGTCTAAGATCAGATCAGAC
*
3025437 TGAGGGTTG
66 CGAGGGTTG
3025446 TGGTAGCAGG
Statistics
Matches: 704, Mismatches: 60, Indels: 23
0.89 0.08 0.03
Matches are distributed among these distances:
699 2 0.00
700 80 0.11
701 92 0.13
702 53 0.08
705 4 0.01
706 2 0.00
707 7 0.01
708 209 0.30
709 255 0.36
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (692 bp):
GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCAAGTCTAAGATCAGATCAGAC
CGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGATGTCCAATTTTCTTCACCGGGGC
ACCATCACTGGAGAACCTGACCGACGGCATTAGGGTTCCGGCGATCGGGGCGGGGGGTGGCGCAC
AAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCACTAAAGTG
TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAA
TTTTTTTGTGCATGCCAAAAAAAATACAACGATCACGTCTACCAAGTTTAGGGCCAAAACTCATT
CCGAAAAAATTTTAAAAAATCTCAAACTACAAAAAGCTTCAAAAATCGTGAAAAATAGAAAACGA
GTCGTCTTGCCATCAAACTTCACGTGAAAGCTTAAGGGACCATTGCATGAATTTACAAGCCATAA
AAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACATACCACCCTATCGATCCAC
AGCTTGCGCATCCCGTCTCTCTGGCCCGCGTAGTACCCGCCC
Found at i:3027173 original size:202 final size:202
Alignment explanation
Indices: 3026796--3027173 Score: 573
Period size: 202 Copynumber: 1.9 Consensus size: 202
3026786 TCGTCTAGCC
*
3026796 ATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATTGCATTG
1 ATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTG
*
3026861 GCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTTCGCAT
66 GCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTTCGCAT
* * *
3026926 CCCCTCTCTCTAGCCGACGTGGTGCCTGCCCGCCCGTCTCCGCCCATTTCGTCAGTTGGCTAGGC
131 CCCCTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGTCCCCGCCCATTTCGTCAGTTGGCTAGGC
3026991 ATGTGCG
196 ATGTGCG
* *
3026998 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
1 ATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTG
* *
3027063 GCACGTATAAATATGAAGATGTGCCTAAA-CCACCTACCA-CCTATCGATCCATGGCTTGT-GCA
66 GCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT-TCGCA
* * * * * *
3027125 TCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCTCGCTCCCCCGCCCA
130 TCCCCTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCG-T-CCCCGCCCA
3027174 CTCGTTTCGT
Statistics
Matches: 158, Mismatches: 15, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
200 50 0.32
201 12 0.08
202 96 0.61
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (202 bp):
ATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTG
GCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTTCGCAT
CCCCTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGTCCCCGCCCATTTCGTCAGTTGGCTAGGC
ATGTGCG
Found at i:3027389 original size:27 final size:27
Alignment explanation
Indices: 3027352--3027413 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 27
3027342 GTTGACTTAG
3027352 GCATACGGAG-TTCATTCCCAGTCTAA
1 GCATACGGAGTTTCATTCCCAGTCTAA
*
3027378 GCATAACGGAGTTTTATTCCCAGTCTAA
1 GCAT-ACGGAGTTTCATTCCCAGTCTAA
3027406 GCAT-CGGA
1 GCATACGGA
3027414 CCGGACCGAG
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
26 8 0.24
27 6 0.18
28 19 0.58
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (27 bp):
GCATACGGAGTTTCATTCCCAGTCTAA
Found at i:3030547 original size:892 final size:890
Alignment explanation
Indices: 3028254--3037871 Score: 11062
Period size: 892 Copynumber: 10.8 Consensus size: 890
3028244 GTTGACTTAG
* **
3028254 GCATATGGAGTTCATTCCCAGTTTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCACGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
3028319 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTTGCCGGGG---CA----C----CATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
3028373 ACCTGACCGGCAGCATTGGGGTTCCGGTGATCGAGGGGGCCGGGGGGGTGTGCACATATGATGTG
131 ACCTGACCGGCGGCATT-GGG---C---GATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
3028438 CGATGGGTGTTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAATCTTGAGAACTCAC
189 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT-AGAACTCAC
* * *
3028503 ACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTAAAAT
253 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
3028568 GGGGACACTTTTTTCAAATGGTCACAAAGTCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
318 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
3028633 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTAGCGGCAAAAATCTCCTTCCAAAAA
383 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-CTCCTTTCGAAAA
* *
3028698 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCATCT
447 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
3028762 TGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGC
512 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
3028827 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGGCTTGC
577 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
3028892 ACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGGCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTA
642 GCATCCCGTCTCTCTGGCCGACGTAGTGCCC-GCCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * **
3028957 GGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGGA-TGGA-CTGAGGGTTATGGCAGCAGGATC
706 GGCATACGGAGTTCATTCCCAGTCTAAGATCA--GACCGGATC-AAGGGTTGCGGCAGCAGGATC
* * ** * *
3029019 GGCAACACGCAAAGGGGGACCCGACTAATCCCCAACTTGCGCATCTCG-CCCTCTGGCTGGCTGA
768 GGCAGCACGCAGAGGGGGACCCGACCGATCCCC-ACTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
3029083 GCGCCCGCACGCTCGCTTCGT-GTTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAA
832 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
3029141 GCATATGAAGTTCATTCCCAGTCTATGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
3029206 CTTGGGCATGTGCTGGTGCCACATTTTTCATCGCCGGGGCACCATCGTCGGAGCATTGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
*
3029271 ACCTGACCAGCGGCATTGGGGTTCTGA-CGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATT-GGG--C-GATCG---GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* ** *
3029334 CGCTGGGTGCTGGTACTTATCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
189 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-TAGAACTCAC
*
3029399 ACCCCCTTAAAGAGCATTTGAGA-TTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAAT
253 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
3029463 GGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTTCAAATTTTTAGCTGAATTTTTTT
318 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTT
* * * *
3029528 GTTCATGCCAACAAAAATACAAGGATCACGGCTACCAAGTTCGAGGCCAAAACTCCTTTCGAAAA
382 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* ** * *
3029593 GATTTTAAAAAATCTTGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAGGAGTCGTCT
447 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * * * *
3029658 TGCCACGAAACTTCATGTGAAGGGTTAAGGGACCATTGTATCAATTTAAAAGCCATAAAAACGGC
512 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** * *
3029723 ATTCGCATGCAGAAATATGAAGATTTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGC
577 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
3029788 GCATCCCGCCTCTCTGGCCGACGTATTGCCCGCCCTCCCGTCCGCTCGCTTCGTCGGATGGCTTA
642 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC-CCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * ** * *
3029853 AGCATATGGAGTTCATTCCCAGTCTAAGATTAGACCGGATCAAGGCTTATGGCAGCAGCATCGGT
706 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGCAGCAGGATCGGC
* * * * * * *
3029918 AGCACGCAGAGGGGGACCTGGCCAATCCCTATCTTACACATCCCGCCCCTCTGGCCGGTTGAGCG
771 AGCACGCAGAGGGGGACCCGACCGATCCCCA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* *
3029983 CCCGCACGCTCGTTTCGTGGGTTGAATTAGGCATACAGAGTTCATTCCCAGTCTAA
835 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * ***
3030039 GCATATGGAGTTCGTTCCCAGTCTAAGATCGGACCAAATCGATGATTATAGCAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * *
3030104 CTCGGGCATGTGCTGGTGCCTTATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
3030169 ACTTGACCGACGGCATT-GGCGATCGGGGGGGCCGGGGGGGTGGGCGCACATGATGT-CGATGGA
131 ACCTGACCGGCGGCATTGGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
3030232 TGCTGGTACTTGGCCCTTATATTTGGCCACCTATCCTTCATCAAAACCTTAGAACTCACACCCCC
196 TGCTGGTACTTGGCCCTTATA-TTGGCCCCCTATCCCTCATC-AAACCTTAGAACTCACACCCCC
*
3030297 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGAC
259 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* ** *
3030362 ACTTTTTTCAAAAGGTCACAAAAAATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATG
324 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * *
3030427 CCAATAAAAATACAAGGATCCCATCTACCAAGTTTGGGGCCAGAACTCCTTTCGAAAAAATTTTA
389 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTA
** ** ** * *
3030492 AAAAATCTTGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGGCATG
454 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
3030557 AAACTGCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
519 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
3030622 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
584 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
** * *
3030687 ACCTCTCTGGCCGATGTAGTGCCCG---CCCG--C-C-CATTTCGTCGGTTGGCTTAGGCATACG
649 GTCTCTCTGGCCGACGTAGTGCCCGCCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * * * * **
3030745 GAGTTCATTCCAAGTCTAACATCAGACTGGATCATGAGTTGCAGTAGCAGGATCGGCAGCTTGCA
714 GAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
* * * * * * ** *
3030810 GAGAGGGATCCGACCGATCCCCGGCTTGTGCATCCCACCCCTCTGGCTGATTGAGGGCCCGCACG
779 GAGGGGGACCCGACCGATCCCC-ACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* *
3030875 CTCGTTTCATGGGTTGACTTAGGCACACGGAGTTCATTCCCAGTCTAA
843 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * * *
3030923 GCATATGAAGTTCATTCCGAGTCTAAGATCAAATCGGACTGAGGGTTGTGGCAGC-CTATGCTGT
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAC-ATGCTGG
** * * * * * * * **
3030987 G-TATGGTAGGTGCTGGAGCCACATTTTTCTTCACAGGGGCACCATCGCCGGAGCATCGTTGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAG
*
3031051 AACCTGACCGGCGGTATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATG
130 AACCTGACCGGCGGCATT--GG----G-CGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATG
*
3031116 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
187 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT-AGAACTC
*
3031181 ACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTG-TAGCCAGTAGCCATTAAAGTGTCTGA
251 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTGA
*
3031245 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTT
315 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
3031310 TGTGTGGCATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCTAAAACTGC-TTCC
380 T-TGT-GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* * * **
3031374 AAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
443 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * * *
3031439 ATCTAGCCATGAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAA
508 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * *
3031504 TGGCATTGGCATGCATAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGC
573 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
3031569 TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCTCG---CCCGCCCGCTCGCTTCGTCGGATGGC
638 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCCCCGCCCGCTCGTTTCGTCGGTTGGC
* * *
3031631 TTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGATCAAGGGTTCCGGCAGCAGGATC
703 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGCAGCAGGATC
* * * * ** * * * *
3031696 AGCAACACGTAGAGGGGGACCCGATCGATCCTCGGCTTGCTCATCCCGCCCCTCTGGCTGCCTAA
768 GGCAGCACGCAGAGGGGGACCCGACCGATCC-CCACTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
3031761 GTGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
832 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
3031820 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCAGCAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
3031885 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
3031950 ACCTGACCGGCGGTATTGGGGTTCCGACGATCAGGGGGGCCGGAGGGGTGGGCGCACATGATGTG
131 ACCTGACCGGCGGCATT--GG----G-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
3032015 CGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAACTCAC
189 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-TAGAACTCAC
3032080 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
253 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** *
3032145 GGGGACACTTTTTTCAAATGGTCACAAAAAATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
318 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * ** *
3032210 TGCATGCCAATAAAAATATAAGGATCCCATCTACCATGTTTGGGAACAAAAATCCTTTCGAAAAA
383 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * * *
3032275 ATTTTAAAAAATCCCTAACCATAAAAAGATTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
448 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
3032340 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
513 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * * *
3032405 TTGGCACGTAGAAATATGAATATATGCCTAAACCCACCGACCACCCTATCGATCCGCGGCTTGCG
578 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
3032470 CATCCTGCCTCTCTGGCCGGCGTAGT----G---CCCGCCCGCTTGTTTCGTCGGTTGGCTCAGG
643 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * * * *
3032528 CATATGGAGTTCATTCCCAGTTTAAGATCGGATCAGATCGAGGGTTGCAGTAGTAGGATCGGCAG
708 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGCAGCAGGATCGGCAG
* * * * *
3032593 CACGCAGAGGGGGACCAGGCCGATCCCTGACTTG-GCATCCCGCCCCTCTAGCCGGCTGAGTGCC
773 CACGCAGAGGGGGACCCGACCGATCCC-CACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* *
3032657 CGCATGCTCGTTTCGTGGTTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
837 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
3032707 -CA-A---AG---A-T--C-G----A-A-CTG----GACCGAGGTTTGCGACAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
3032750 CTCGAGCATATGCTAGTGCCGCATTTTTCTTCGTCGGTGCACCATCGTCGGAGCATCACCGGATA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
3032815 ACCTGATCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCTC-GGGGGGTGTGCACACACGATGT
131 ACCTGACCGGCGGCATT---G----GGCGATCGGGGGGGC-CGGGGGGGTGTGCGCACATGATGT
* *
3032878 GCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
188 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-TAGAACTCA
* * *
3032943 CACCCCCTTAAACAGCATTTGAGATTTTACAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
252 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
3033008 TGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTAAACCTT-GAGTTTTTAGCTGAATGTTTT
317 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-CTTCGAGTTTTTAGCTGAATTTTTT
* * *
3033072 TGTGCATGCCAACAAAAATACAAGGATCACATCTACAAAGTTTGGGGCCAAAACTCGTTGT-GAA
381 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-TCGAA
* * * *
3033136 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAATGAGTCAT
445 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
** *
3033201 CTTGCCATGGAAACTTCACGTGAAGGGCTTAAGGGACCA-TGTATGAATTTACAAGAAACAAAAA
510 CTTGCCAT-GAAACTTCACGTGAA-GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
3033265 TGGCATT-GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GC
573 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
3033328 TTACGCAT-CCGTCTCTCTAGCCGACGTAGTG-TCGCCCGCCCGCCC-CTCGTTTCGTC-GTTGG
638 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC-CCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * *
3033389 CTTAGGCATGATGGAGTTCATTCCCAGTCTAAGGATCGGATCGGA-CTGAGGGTTGCAGCAGTAG
702 CTTAGGCAT-ACGGAGTTCATTCCCAGTCTAA-GATCAGACCGGATC-AAGGGTTGCGGCAGCAG
* * * *
3033453 GATCGGTAGCACGCAGA--GGTACCCGACCGATCCCCGACTTGCGCATCCCGACCCTCTGGGCGG
764 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC-ACTTGCGCATCCCGCCCCTCTGGCCGG
* * *
3033516 CTAAGCGCCCGCACGCTCGTTTCATGTGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
828 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
3033575 -C-TA---AG---------A-TC--AGATCAGACCAGACTGAGGCTTGTGGCAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
3033623 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAGCATCGTCAAAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
3033688 ACCTGACCGGCGGCATTAGGGTTCCGATGATCGAGGGGGTCGGGGAGGTGTGCGCACATGATGAG
131 ACCTGACCGGCGGCATT-GGG---C---GATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
3033753 C-A---AT--AGGTA------CC----A---G-----TA-CCTCTCATCAAACCTAGAGAACTCA
189 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC-CTCATCAAACCT-TAGAACTCA
* * * *
3033793 CACCGCCTTAAAAAGCATTTGAGATTTTACAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
252 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
3033858 TGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATGTTTTT
317 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
3033923 GTGCATGCCAAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCGTTGCGAAA
382 GTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * *
3033988 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATC
446 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
** *
3034053 TTGCCATGAAACTTCACGTGAAGG-TTAAGGGACCATTGTATGAATTTACAAGAAACAAAAATGG
511 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
3034117 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
576 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
3034182 CGCATCTCGTTTCTTTGGCCGGCATAGTGTCTGCCCGCTCGTCCGCCCGCCCGCTCGTTTTGTCG
641 CGCATCCCGTCTCTCTGGCCGACGTA--G--TGCCCG--C--CC-CCCGCCCGCTCGTTTCGTCG
* * *
3034247 GTTGGCTTAGGCATACGGAGTTCGTTCCCAGTCTAAGATCAGACCAG-TCCGAA-GGTTGTGGCA
697 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAT-C-AAGGGTTGCGGCA
** * * * * * *
3034310 GCAGGATCAACAACACGTAGAGGGGCA-CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTATGG
760 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC-ACTTGCGCATCCCGCCCCTCTGG
* * * * * * *
3034374 CCGGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTAACTTAGGCATGCAGAATTCATTTCCAGTCT
824 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
3034439 AA
889 AA
** * * *
3034441 GCATGCGGAGTTCATTCCCAGTCTAAAATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
3034506 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCTGCGGTACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
** * *
3034571 ACCTGACCGGCCACATTGGGGTTCCGACGATCGGGTGGGCCGGGGGGTGGGTGTGCACACATGAT
131 ACCTGACCGGCGGCATT--GG----G-CGATCGGGGGGGCC--GGGG-GGGTGTGCGCACATGAT
*
3034636 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAACT
186 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT-AGAACT
* * * *
3034701 CACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTACTGCCAGTAGCTATTAAAGTGTCTGT
250 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
3034766 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
315 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * ** *
3034831 TTATGCATGCCAAAAAAAATACAAGGATCATGTCTATGAAGTTTGGGGCCAAAACTCCTTCCGAA
380 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* * * *
3034896 AAAATTTAAAAAATATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCG
445 AAAATTTTAAAAA-ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
3034961 TCTTGCCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTTAAAACCCAT-AAAAT
509 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
3035025 GGCATTGGCACATAGAAATATGAAGATTTTCCTAAACCCACCTACCTCCC-ATCGATCCACGGCT
574 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
3035089 TGCGCATCTCGTCTCTCTGGGCGACGTAGTGCCCG-CCGCCGCCCGCTCATTTCTTCGGTTGGCA
639 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * *
3035153 TAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGAT-AGAGGGTTACGGCTGTAGGATC
704 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCA-AGGGTTGCGGCAGCAGGATC
** ** * * *
3035217 AACAGCACGCAGAGGGGGACCCGGTCGATGCCCGACTTGCGAATCCCACCCCTCTGGCCGGCTGA
768 GGCAGCACGCAGAGGGGGACCCGACCGAT-CCCCACTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
3035282 GCGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAG----TT--CA-T-T--
832 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
3035331 -C-------G--------CAGTCTAAGATCGGATCAGATCGAGGGTTACAGCAGCACATGCTGGA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
3035380 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCGGAGAACCTGACC-GA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATC-G-CCGGA
* * * *
3035444 CG-A-C--ATCGG-GG-ATCT-AGCGATC-GAGGGGCC-GGGGGGTGTGCGAACATGATGTGCGA
129 -GAACCTGACCGGCGGCAT-TGGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
* *
3035500 TGGGTGCTGGCACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
192 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT-AGAACTCACACC
3035565 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
256 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
3035630 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
321 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
3035695 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACT-CTTTCCGAAAAAA
386 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTT-CGAAAAAA
** * * *
3035759 TTTTAAAAAATCCAAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTG
449 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * * **
3035824 CCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAAATTAGAAGCCATAAAAATGGTTT
514 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * *
3035889 TGGCACGTAGAAATATGAAGATGTGCCTAAAGCCACCTGCCACCCTATCGATCCACGGCTTGCGC
579 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
*
3035954 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCCGCCCGCCCGCTCGTTTCGTCGATTGGCT
644 ATCCCGTCTCTCTGGCCGACGTAGTGCCCG----CCC-CCCGCCCGCTCGTTTCGTCGGTTGGCT
* *
3036019 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CTGAGGGTTACGGCAGCAGGATC
704 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-AAGGGTTGCGGCAGCAGGATC
* * * * * * * * *
3036083 GGCAGCATGTAGAGGGGGACTCGATCGATCCCCAACTTGCCCATCCCGCCTCTCTAGTCGGCTCA
768 GGCAGCACGCAGAGGGGGACCCGACCGATCCCC-ACTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * * *
3036148 GCGCCCGCACGTTGGTTTCATTGGTTGACTTAGGCGTACGGAGTTCATTACCAGTCTAA
832 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*** * * ** * *
3036207 GCATGCAGAGTTCATTCCTAGTCTAAGATCAGACTGGATCGAGGGTTGCGACAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
3036272 C-CTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACGATCGTCAGAGCATCACCGGAG
66 CTC-GGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAG
* ** *
3036336 AACCTGACCAGTAGCATTGGAGTACCGA-CGATGGGGGGCCCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGG-G---CGATCG--GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
3036400 CGATGGGTGCTGGTACTTGGCTCC-TATATTGGGCCCCTATCCCTCATCAAATCTCAAGAACTCA
189 CGATGGGTGCTGGTACTTGGC-CCTTATATTGGCCCCCTATCCCTCATCAAACCT-TAGAACTCA
*
3036464 CACCCCCTTAAAGCA-CATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAA
252 CACCCCCTTAAAG-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
3036528 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTTGCGGTATTTTTT
316 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
3036593 TCTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC-TCCTGAA
381 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAA
** * *
3036657 AAAATTTTAAAAAATCCCGAAAGGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGT
445 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
3036722 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAGGCCATAAAAATG
510 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
3036787 GCATTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGAT-CACGGCTT
575 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
3036851 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCCCGTCTGCCCGCCCGCCCGCTC
640 GCGCATCCCGTCTCTCTGGCCGACGTA------GT------G-CC--C-GCCC-CCCGCCCGCTC
* * * * *
3036916 ATTTCATCGGTTGGCTTTGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGT
688 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGT
*** ** ** *** *
3036981 TGCGGCAGCAGGATCAAAAGCACGCAGAAAGGGACTTGGTTGATCCCCGACTTGCGCATCCCGTC
753 TGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC-ACTTGCGCATCCCGCC
* * * *
3037046 CCTCTGGCCGGCTGAGCGCCCACACACTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTC
817 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
3037111 CCAGTCTAA
882 CCAGTCTAA
* * * * * * *
3037120 GCATACGGAGTTCATTCCTAGTCTAAGATCGAACTAGACCGAGGGTTGTGGTAGCACATGCTAGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** *
3037185 CTCGAGCATGTGCTGGTGTCAG-ATTTTTCTTCACCGGGACACCATCCCCGGAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTG-CCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * ** *
3037249 AACTTGACCGGCGGCTGGGATTCCGACGATC--GGGATCC-TGGGGGTGTGCGCACATGATGTGC
130 AACCTGACCGGCGGC----ATT-GGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * * *
3037311 GATGGGTGCTGGTACCTGGCTCTTATATTGGCCCCCTGTCCCTCATCAAACCTTGAAAACTCACA
190 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT-AGAACTCACA
* * * *
3037376 CCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTACTGCCTGTAGCCATTAAAGTGTCTGTAATG
254 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
3037441 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
319 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
3037506 GCATGCCAACAAAAATACAGGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCATT-GAAAAAA
384 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
* *
3037570 GTTTTAAAAAATCCCGAACCGTAAAATGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTT
449 -TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * *
3037635 GCCATGAAAGTTCACGTGAAAGCTTAAGGGACCATTGTATGAATCTACAAGCCACAAAAATGGCA
513 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
3037700 TTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
578 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * * *
3037765 CATCCCGTATCTCTAGCCGGCGTAATGCCCGTCCGCCCACCCGCTCACTCATTTCATCGGTTGGC
643 CATCCCGTCTCTCTGGCCGACGTAGTG--C--CCGCCC-CCCGCCCGCTCGTTTCGTCGGTTGGC
* * * *
3037830 TTAGGCATACAGAATTCGTTCCCACTCTAAGATC-GAACCGGA
703 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGA
3037872 CTGAGGGTTA
Statistics
Matches: 7543, Mismatches: 907, Indels: 550
0.84 0.10 0.06
Matches are distributed among these distances:
848 11 0.00
849 39 0.01
850 225 0.03
851 131 0.02
852 14 0.00
854 1 0.00
855 1 0.00
856 2 0.00
857 2 0.00
858 350 0.05
859 73 0.01
860 47 0.01
861 41 0.01
862 142 0.02
863 31 0.00
864 373 0.05
865 158 0.02
866 182 0.02
867 36 0.00
868 112 0.01
869 54 0.01
870 8 0.00
871 5 0.00
872 6 0.00
873 102 0.01
874 116 0.02
875 4 0.00
876 4 0.00
877 1 0.00
878 1 0.00
879 1 0.00
880 1 0.00
881 2 0.00
882 3 0.00
883 179 0.02
884 217 0.03
885 6 0.00
886 23 0.00
887 91 0.01
888 5 0.00
889 2 0.00
890 7 0.00
891 130 0.02
892 718 0.10
893 330 0.04
894 59 0.01
895 171 0.02
896 667 0.09
897 474 0.06
898 286 0.04
899 153 0.02
900 81 0.01
901 39 0.01
902 188 0.02
903 248 0.03
904 3 0.00
905 8 0.00
907 3 0.00
909 106 0.01
910 687 0.09
911 67 0.01
913 300 0.04
914 9 0.00
915 1 0.00
916 1 0.00
917 4 0.00
918 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAA
AAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGACGTAGTGCCCGCCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
GGGGGACCCGACCGATCCCCACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:3031830 original size:26 final size:26
Alignment explanation
Indices: 3031794--3031846 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3031784 GTTGACTTAG
3031794 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
3031820 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
3031846 G
1 G
3031847 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:3034454 original size:26 final size:26
Alignment explanation
Indices: 3034415--3034466 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
3034405 GTTAACTTAG
*
3034415 GCATGCAGAATTCATTTCCAGTCTAA
1 GCATGCAGAATTCATTCCCAGTCTAA
* *
3034441 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATGCAGAATTCATTCCCAGTCTAA
3034467 AATCGGATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATGCAGAATTCATTCCCAGTCTAA
Found at i:3036897 original size:12 final size:12
Alignment explanation
Indices: 3036880--3036913 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
3036870 CCGACGTAGT
3036880 GCCCGTCCGCCC
1 GCCCGTCCGCCC
*
3036892 GCCCGTCTGCCC
1 GCCCGTCCGCCC
*
3036904 GCCCGCCCGC
1 GCCCGTCCGC
3036914 TCATTTCATC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.65, G:0.26, T:0.09
Consensus pattern (12 bp):
GCCCGTCCGCCC
Found at i:3037130 original size:26 final size:26
Alignment explanation
Indices: 3037094--3037146 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3037084 GTTAACTTAG
3037094 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
3037120 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3037146 G
1 G
3037147 ATCGAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3037555 original size:910 final size:911
Alignment explanation
Indices: 3035472--3037889 Score: 3378
Period size: 910 Copynumber: 2.7 Consensus size: 911
3035462 GATCGAGGGG
* * *
3035472 CCGGGGGGTGTGCGAACATGATGTGCGATGGGTGCTGGCACTTGGCCCCTATATTGGCCCCCTAT
1 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCCTATATTGGCCCCCTAT
*
3035537 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
66 CCCTCATCAAACCTTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
3035602 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
131 CTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
3035667 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
196 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * *
3035732 TGGGGCCAAAAACTCTTTCC-GAAAAAATTTTAAAAAAT-CCAAAACCGCAAAAAGTTTCAAAAA
261 TGGGGCC-AAAACTC-CTCCTGAAAAAATTTTAAAAAATCCCGAAA-CGTAAAAAGTTTCAAAAA
* *
3035795 TCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTG
323 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * ** * *
3035860 TATGAAATTAGAAGCCATAAAAATGGTTTTGGCACGTAGAAATATGAAGATGTGCCTAAAGCCAC
388 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
*
3035925 CTGCCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA-----GT--GCCC
453 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTATGCCCGTCCGCCC
* * *
3035983 G-CC-CTCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
518 GCCCGCTCCCGCCCGCCCGCTCATTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCT
*** * * **
3036046 AAGATCAGACCGGACTGAGGGTTACGGCAGCAGGATCGGCAGCATGTAGAGGGGGACTCGATCGA
583 AAGATCAGACCGGACTGAGGGTTACGGCAGCAGGATCAAAAGCACGCAGAAAGGGACTCGATCGA
* * ** * * *
3036111 TCCCCAACTTGCCCATCCCGCCTCTCTAGTCGGCTCAGCGCCCGCACGTTGGTTTCATTGGTTGA
648 TCCCCAACTTGCCCATCCCGCCTCTCTAGCCGGCTCAGCGCCCACACACTCGTTTCATGGGTTAA
* * *
3036176 CTTAGGCGTACGGAGTTCATTACCAGTCTAAGCATGCAGAGTTCATTCCTAGTCTAAGATCAGAC
713 CTTAGGCATACAGAGTTCATTACCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCAGAC
* * * * * **
3036241 TGGATCGAGGGTTGCGACAGCACATGCTGGGCCTGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
778 TAGACCGAGGGTTGCGACAGCACATGCTAGGCCTGAGCATGTGCTGGTGCAGCATTTTTCTTCAC
* ** * * *
3036306 CGAGGCACGATCGTCAGAGCATCACCGGAGAACCTGACCAGTAGCATTGGAGTACCGACGATGGG
843 CGAGGCACCATCCCCAGAGCATCACCGGAGAACCTGACCAGCAGCATGGGAGTACCGACGATGCG
*
3036371 GGGC
908 GGAC
*
3036375 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCCTATATTGGGCCCCTAT
1 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCCTATATTGGCCCCCTAT
* *
3036440 CCCTCATCAAATC-TCAAGAACTCACACCCCCTTAAAGCA-CATTTGAGATTTTACAGGTTTGCT
66 CCCTCATCAAACCTTGAA-AACTCACACCCCCTTAAAG-AGCATTTGAGATTTTACAGGTTTGCT
3036503 GCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
129 GCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * * *
3036568 CTTCGATTTTTTTGCGGTATTTTTTTCTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAG
194 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
*
3036633 TTTGGGGCCAAAACTCCTCCTGAAAAAATTTTAAAAAATCCCGAAAGGTAAAAAGTTTCAAAAAT
259 TTTGGGGCCAAAACTCCTCCTGAAAAAATTTTAAAAAATCCCGAAACGTAAAAAGTTTCAAAAAT
*
3036698 CATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
324 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
3036763 ATGAATTTATAGGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCCACC
389 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
3036828 TACCACCCTATCGAT-CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCC
454 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA-TGCCCGTCCGCCC
* *
3036892 GCCCGTCTGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTTGGCATACGGAGTTCATTCCCAAT
518 GCCCG-CT-CCCGCCCGCCCGCTCATTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAAT
* * *
3036957 CTAAGATCAGACCGGA-TCGAGGGTTGCGGCAGCAGGATCAAAAGCACGCAGAAAGGGACTTGGT
581 CTAAGATCAGACCGGACT-GAGGGTTACGGCAGCAGGATCAAAAGCACGCAGAAAGGGACTCGAT
* * * * * *
3037021 TGATCCCCGACTTGCGCATCCCGTCC-CTCTGGCCGGCTGAGCGCCCACACACTCGTTTCGTGGG
645 CGATCCCCAACTTGCCCATCCCG-CCTCTCTAGCCGGCTCAGCGCCCACACACTCGTTTCATGGG
* *
3037085 TTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATC
709 TTAACTTAGGCATACAGAGTTCATTACCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATC
* **
3037150 -GAACTAGACCGAGGGTTGTGGTAGCACATGCTAGG-CTCGAGCATGTGCTGGTGTCAG-ATTTT
774 AG-ACTAGACCGAGGGTTGCGACAGCACATGCTAGGCCT-GAGCATGTGCTGGTG-CAGCATTTT
* * * * *
3037212 TCTTCACCG-GGACACCATCCCCGGAGCATCACCGGAGAACTTGACCGGCGGC-TGGGA-TTCCG
836 TCTTCACCGAGG-CACCATCCCCAGAGCATCACCGGAGAACCTGACCAGCAGCATGGGAGTACCG
*
3037274 ACGAT-CGGGAT
900 ACGATGCGGGAC
* * * *
3037285 CCTGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACCTGGCTCTTATATTGGCCCCCTGT
1 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCCTATATTGGCCCCCTAT
* *
3037350 CCCTCATCAAACCTTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTACTGC
66 CCCTCATCAAACCTTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
3037415 CTGTAGCCATTAAAGTGTCTGTAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
131 CTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
3037480 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGTT
196 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * *
3037545 TAGGGCCAAAACTCCAT--TGAAAAAAGTTTTAAAAAATCCCGAACCGTAAAATGTTTCAAAAAT
261 TGGGGCCAAAACTCC-TCCTGAAAAAA-TTTTAAAAAATCCCGAAACGTAAAAAGTTTCAAAAAT
* * *
3037608 CTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTCACGTGAAAGCTTAAGGGACCATTGT
324 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * *
3037673 ATGAATCTACAAGCCACAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACC
389 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * *
3037738 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTATCTCTAGCCGGCGTAATGCCCGTCCGCCC
454 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT-ATGCCCGTCCGCCC
* * * * * * *
3037803 ACCCGCT----------CACTCATTTCATCGGTTGGCTTAGGCATACAGAATTCGTTCCCACTCT
518 GCCCGCTCCCGCCCGCCCGCTCATTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCT
*
3037858 AAGATC-GAACCGGACTGAGGGTTACGGTAGCA
583 AAGATCAG-ACCGGACTGAGGGTTACGGCAGCA
3037890 CATGCTGGGC
Statistics
Matches: 1355, Mismatches: 130, Indels: 64
0.87 0.08 0.04
Matches are distributed among these distances:
898 1 0.00
899 68 0.05
900 1 0.00
901 38 0.03
902 177 0.13
903 253 0.19
904 1 0.00
907 2 0.00
909 14 0.01
910 426 0.31
911 61 0.05
912 13 0.01
913 296 0.22
914 4 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (911 bp):
CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCCTATATTGGCCCCCTAT
CCCTCATCAAACCTTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
TGGGGCCAAAACTCCTCCTGAAAAAATTTTAAAAAATCCCGAAACGTAAAAAGTTTCAAAAATCA
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTATGCCCGTCCGCCCGCC
CGCTCCCGCCCGCCCGCTCATTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAG
ATCAGACCGGACTGAGGGTTACGGCAGCAGGATCAAAAGCACGCAGAAAGGGACTCGATCGATCC
CCAACTTGCCCATCCCGCCTCTCTAGCCGGCTCAGCGCCCACACACTCGTTTCATGGGTTAACTT
AGGCATACAGAGTTCATTACCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCAGACTAG
ACCGAGGGTTGCGACAGCACATGCTAGGCCTGAGCATGTGCTGGTGCAGCATTTTTCTTCACCGA
GGCACCATCCCCAGAGCATCACCGGAGAACCTGACCAGCAGCATGGGAGTACCGACGATGCGGGA
C
Found at i:3038198 original size:143 final size:143
Alignment explanation
Indices: 3037940--3038201 Score: 384
Period size: 143 Copynumber: 1.8 Consensus size: 143
3037930 ACCGGGGCAC
* * *
3037940 CATCGCTGGAGAACATGACCGGCAGCAATGGGGTTCCGACAATCGGGGGGGCCGAGGGAGTGTGC
1 CATCGCCGGAGAACATGACCGGCAGCAATAGGGTTCCGACAATCGGGGGGGCCAAGGGAGTGTGC
* *
3038005 ATACATGATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCGTCGGGGT
66 ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCGTCGGGGT
3038070 GCCATTGTCGGAG
131 GCCATTGTCGGAG
* * * *
3038083 CATCGCCGGAGAACCTGACCGGC-GACATTAGGGTTCC-AGCGATCGGGGGGGCCAAGGGGGTGT
1 CATCGCCGGAGAACATGACCGGCAG-CAATAGGGTTCCGA-CAATCGGGGGGGCCAAGGGAGTGT
* * *
3038146 GCGCACATGATGTGCGATGGGTGCTTGTACTTGGCCCTTATATTGGTCCCCTATCC
64 GCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
3038202 CTCATCAAAC
Statistics
Matches: 105, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
142 2 0.02
143 103 0.98
ACGTcount: A:0.17, C:0.25, G:0.35, T:0.23
Consensus pattern (143 bp):
CATCGCCGGAGAACATGACCGGCAGCAATAGGGTTCCGACAATCGGGGGGGCCAAGGGAGTGTGC
ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCGTCGGGGT
GCCATTGTCGGAG
Found at i:3039126 original size:57 final size:57
Alignment explanation
Indices: 3039064--3039520 Score: 565
Period size: 57 Copynumber: 7.7 Consensus size: 57
3039054 TCTTGTGTAG
* * **
3039064 GGAAAATTGATAGTTTTAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTTTC
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTTAA
*
3039121 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTTAA
* * *
3039178 GGAAAATTGATACTTTCAATTTTTCCCCAAAAATATTTTTTTGGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT-GAAA-TTT-ATTTTTAA
* *
3039238 GGAAAATTGATACTTTCAACTGTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTTAA
* **
3039295 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCAAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTTG-AAATTTATTTTTAA
*
3039354 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAATCCCTTTTTTTTTTTTTGAAAATTTATTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAA--------TATTTTTTTG-AAATTTATTTTT
3039418 AA
56 AA
* * ** *
3039420 GGAAAATGGATACTTTCAACTTTTTCCTAAAAATATTTTTCAGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAA-TTT-ATTTTTAA
* *
3039479 GGAAGATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT
3039521 TGGAACTTTT
Statistics
Matches: 349, Mismatches: 34, Indels: 32
0.84 0.08 0.08
Matches are distributed among these distances:
57 134 0.38
58 26 0.07
59 91 0.26
60 45 0.13
66 49 0.14
67 4 0.01
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.46
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTTAA
Found at i:3039412 original size:66 final size:66
Alignment explanation
Indices: 3039330--3039453 Score: 205
Period size: 66 Copynumber: 1.9 Consensus size: 66
3039320 CCCAAAAATA
*
3039330 TTTTTTTTGAAAATTTATTTCAAAGGAAAATTGATACTTTCAAC-TTTTCCTCAAAAATCCCTTT
1 TTTTTTTTGAAAATTTATTTCAAAGGAAAATGGATACTTTCAACTTTTTCCT-AAAAATCCCTTT
3039394 TT
65 TT
**
3039396 TTTTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTTCCTAAAAAT
1 TTTTTTTTGAAAATTTATTTCAAAGGAAAATGGATACTTTCAACTTTTTCCTAAAAAT
3039454 ATTTTTCAGA
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
66 47 0.87
67 7 0.13
ACGTcount: A:0.33, C:0.12, G:0.07, T:0.48
Consensus pattern (66 bp):
TTTTTTTTGAAAATTTATTTCAAAGGAAAATGGATACTTTCAACTTTTTCCTAAAAATCCCTTTT
T
Found at i:3039432 original size:125 final size:125
Alignment explanation
Indices: 3039273--3039512 Score: 367
Period size: 125 Copynumber: 1.9 Consensus size: 125
3039263 CCTAAAAATA
* * **
3039273 TTTTTTGGAAATTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
1 TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATA-TTTTTCA
*
3039338 GAAAATTT-A-TTTCAAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTT
65 GAAAATTTGATTTTC-AAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATCCCTTTTTTT
* *
3039398 TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTTCCTAAAAATATTTTTCAG
1 TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATATTTTTCAG
* *
3039463 AAATTTTGATTTTCAAGGAAGATTGATACTTTCAACTTTTCCCCAAAAAT
66 AAAATTTGATTTTCAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAAT
3039513 ATTTTTTTTG
Statistics
Matches: 104, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
124 12 0.12
125 88 0.85
126 4 0.04
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (125 bp):
TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATATTTTTCAG
AAAATTTGATTTTCAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATCCCTTTTTTT
Found at i:3039582 original size:16 final size:16
Alignment explanation
Indices: 3039559--3039619 Score: 70
Period size: 16 Copynumber: 3.8 Consensus size: 16
3039549 ATAGAATAAT
*
3039559 AAAA-AAATAAAAGTG
1 AAAATAAATAAAAGTA
*
3039574 AAAATAAATAAAAATA
1 AAAATAAATAAAAGTA
*
3039590 AAAATAAAGAAAAGTA
1 AAAATAAATAAAAGTA
*
3039606 AAACAAAAATAAAA
1 AAA-ATAAATAAAA
3039620 ATAAGATAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
15 4 0.11
16 26 0.68
17 8 0.21
ACGTcount: A:0.79, C:0.02, G:0.07, T:0.13
Consensus pattern (16 bp):
AAAATAAATAAAAGTA
Found at i:3039588 original size:6 final size:6
Alignment explanation
Indices: 3039561--3039637 Score: 52
Period size: 6 Copynumber: 12.8 Consensus size: 6
3039551 AGAATAATAA
* * * *
3039561 AAAAAT AAAAGT GAAAAT --AAAT AAAAAT AAAAAT AAAGAAA AGTAAAAC
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAA-AAT A--AAAAT
* *
3039610 AAAAAT AAAAAT -AAGAT AAAGAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
3039638 ATATTAAATA
Statistics
Matches: 57, Mismatches: 8, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
4 4 0.07
5 4 0.07
6 41 0.72
7 3 0.05
8 3 0.05
9 2 0.04
ACGTcount: A:0.77, C:0.01, G:0.08, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:3039598 original size:27 final size:25
Alignment explanation
Indices: 3039541--3039623 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 25
3039531 GATTTTTATT
*
3039541 TAAAGAAAATAGAATAATAA-AAAAA
1 TAAAGAAAATA-AATAAAAATAAAAA
3039566 TAAAAGTGAAAATAAATAAAAATAAAAA
1 T-AAA--GAAAATAAATAAAAATAAAAA
*
3039594 TAAAGAAAAGTAAAACAAAAATAAAAA
1 TAAAGAAAA-T-AAATAAAAATAAAAA
3039621 TAA
1 TAA
3039624 GATAAAGATA
Statistics
Matches: 50, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
25 6 0.12
26 4 0.08
27 27 0.54
28 13 0.26
ACGTcount: A:0.76, C:0.01, G:0.07, T:0.16
Consensus pattern (25 bp):
TAAAGAAAATAAATAAAAATAAAAA
Found at i:3039628 original size:11 final size:11
Alignment explanation
Indices: 3039561--3039636 Score: 59
Period size: 11 Copynumber: 6.9 Consensus size: 11
3039551 AGAATAATAA
3039561 AAAAATAAAAGT
1 AAAAATAAAA-T
*
3039573 GAAAAT-AAAT
1 AAAAATAAAAT
3039583 AAAAATAAAAAT
1 AAAAAT-AAAAT
* *
3039595 AAAGA-AAAGT
1 AAAAATAAAAT
3039605 AAAACA-AAAAT
1 AAAA-ATAAAAT
*
3039616 AAAAATAAGAT
1 AAAAATAAAAT
*
3039627 AAAGATAAAA
1 AAAAATAAAA
3039637 AATATTAAAT
Statistics
Matches: 51, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
10 14 0.27
11 24 0.47
12 13 0.25
ACGTcount: A:0.76, C:0.01, G:0.08, T:0.14
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:3039630 original size:27 final size:28
Alignment explanation
Indices: 3039583--3039636 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
3039573 GAAAATAAAT
3039583 AAAAATAAAAATAAAGAAAAG-TAAAAC
1 AAAAATAAAAATAAAGAAAAGATAAAAC
3039610 AAAAATAAAAAT-AAGATAAAGATAAAA
1 AAAAATAAAAATAAAGA-AAAGATAAAA
3039637 AATATTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 4 0.16
27 16 0.64
28 5 0.20
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.13
Consensus pattern (28 bp):
AAAAATAAAAATAAAGAAAAGATAAAAC
Found at i:3040571 original size:4 final size:4
Alignment explanation
Indices: 3040552--3040641 Score: 55
Period size: 4 Copynumber: 23.0 Consensus size: 4
3040542 TAATAATAAT
* * *
3040552 AATA TATA ATTA AATA AAT- -ATA AATA AATA AATA AATA AA-A CAAAA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA -AATA
* * * *
3040598 AATA ATAAA AATA TATA TTATT AAT- AATA AATA AAT- AATA AATA
1 AATA A-ATA AATA AATA -AATA AATA AATA AATA AATA AATA AATA
3040642 CATAGGATAT
Statistics
Matches: 68, Mismatches: 10, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
2 2 0.03
3 7 0.10
4 52 0.76
5 7 0.10
ACGTcount: A:0.69, C:0.01, G:0.00, T:0.30
Consensus pattern (4 bp):
AATA
Found at i:3040574 original size:14 final size:14
Alignment explanation
Indices: 3040549--3040585 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
3040539 TAATAATAAT
*
3040549 AATAATATATAATTA
1 AATAA-ATATAAATA
3040564 AATAAATATAAATA
1 AATAAATATAAATA
3040578 AATAAATA
1 AATAAATA
3040586 AATAAAACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 16 0.76
15 5 0.24
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (14 bp):
AATAAATATAAATA
Found at i:3040577 original size:22 final size:22
Alignment explanation
Indices: 3040552--3040641 Score: 73
Period size: 22 Copynumber: 4.2 Consensus size: 22
3040542 TAATAATAAT
*
3040552 AATATATAATTAAATAAATATA
1 AATAAATAATTAAATAAATATA
* *
3040574 AATAAATAAATAAATAAA-ACA
1 AATAAATAATTAAATAAATATA
3040595 AA-AAATAA-TAAA-AATATATA
1 AATAAATAATTAAATAA-ATATA
* *
3040615 TTATTAATAA-TAAATAAATAATA
1 -AATAAATAATTAAATAAAT-ATA
3040638 AATA
1 AATA
3040642 CATAGGATAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
18 2 0.04
19 5 0.09
20 8 0.15
21 5 0.09
22 29 0.54
23 5 0.09
ACGTcount: A:0.69, C:0.01, G:0.00, T:0.30
Consensus pattern (22 bp):
AATAAATAATTAAATAAATATA
Found at i:3040583 original size:47 final size:50
Alignment explanation
Indices: 3040464--3040590 Score: 120
Period size: 47 Copynumber: 2.6 Consensus size: 50
3040454 TCAGCCCTCC
*
3040464 AAAATAAAAATCAAATAAATAAAAAAATAATAGATAATTAGAGAAGATAAT
1 AAAATAAATAT-AAATAAATAAAAAAATAATAGATAATTAGAGAAGATAAT
* * * * *
3040515 AAAAAAAATAT-TATAGGATAAAAATAATAATA-ATAA-TA-A-TATATAAT
1 AAAATAAATATAAATA-AATAAAAA-AATAATAGATAATTAGAGAAGATAAT
* *
3040562 TAAATAAATATAAATAAATAAATAAATAA
1 AAAATAAATATAAATAAATAAAAAAATAA
3040591 AACAAAAAAT
Statistics
Matches: 62, Mismatches: 11, Indels: 11
0.74 0.13 0.13
Matches are distributed among these distances:
46 5 0.08
47 21 0.34
48 4 0.06
49 5 0.08
50 11 0.18
51 16 0.26
ACGTcount: A:0.69, C:0.01, G:0.05, T:0.26
Consensus pattern (50 bp):
AAAATAAATATAAATAAATAAAAAAATAATAGATAATTAGAGAAGATAAT
Found at i:3040684 original size:12 final size:12
Alignment explanation
Indices: 3040654--3040682 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
3040644 TAGGATATAC
3040654 ATAAAATATAAA
1 ATAAAATATAAA
3040666 ATAAAATA-AAA
1 ATAAAATATAAA
3040677 ATAAAA
1 ATAAAA
3040683 ATGACAAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 9 0.53
12 8 0.47
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (12 bp):
ATAAAATATAAA
Found at i:3040953 original size:10 final size:10
Alignment explanation
Indices: 3040938--3040983 Score: 60
Period size: 10 Copynumber: 4.7 Consensus size: 10
3040928 TAGAGGTAAC
3040938 TTTTTTT-CAT
1 TTTTTTTGC-T
3040948 TTTTTTTGCT
1 TTTTTTTGCT
*
3040958 TTTTTTT-TT
1 TTTTTTTGCT
3040967 TTTTTTTGCT
1 TTTTTTTGCT
3040977 TTTTTTT
1 TTTTTTT
3040984 TTAAATTGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 8 0.25
10 23 0.72
11 1 0.03
ACGTcount: A:0.02, C:0.07, G:0.04, T:0.87
Consensus pattern (10 bp):
TTTTTTTGCT
Found at i:3040983 original size:19 final size:19
Alignment explanation
Indices: 3040937--3040985 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
3040927 ATAGAGGTAA
**
3040937 CTTTTTTTCATTTTTTTTG
1 CTTTTTTTTTTTTTTTTTG
3040956 CTTTTTTTTTTTTTTTTTG
1 CTTTTTTTTTTTTTTTTTG
3040975 CTTTTTTTTTT
1 CTTTTTTTTTT
3040986 AAATTGATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.02, C:0.08, G:0.04, T:0.86
Consensus pattern (19 bp):
CTTTTTTTTTTTTTTTTTG
Found at i:3041025 original size:126 final size:123
Alignment explanation
Indices: 3040868--3041238 Score: 510
Period size: 126 Copynumber: 3.0 Consensus size: 123
3040858 TTTTTTTTAC
* * * *
3040868 CAAAGCTCATTTAAACAGAGGCTCAACGACTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAG
1 CAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAG
* *
3040933 GTAACTTTTTTTCATTTTTTTTGCTTTTTTTTTTTTTTTTTGCTTTTTTTTTTAAATTGAT
66 GTAACTTTTTTT-ATTTTTTTT--TTTTTTTTTTTTTTTTTGTTTTTTTTTTTAAAATGAT
* *
3040994 CAAAGCTCCTCTAAGCAGAGGTTCAATGACTTTGAGAAACATAAACAAAGCTCCTCTAAATAGAG
1 CAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAG
* ** *
3041059 GCATTTTTTTTTTTGTTTTTTTTTTTTTTTTTGTTTTTTTGTTTTTTTTTTTTTAAAAATGAT
66 GTAACTTTTTTTAT-TTTTTTTTTTTTTTTTT-TTTTTTTG--TTTTTTTTTTT-AAAATGAT
*
3041122 CAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAGAAACATAAATGAAGCTCCTCTAAATAGAG
1 CAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAG
* ** *
3041187 GTAAC-TTTTTTGTTTTTTTTTTTTTCCTATTTTTTTTGTTTTTTTTTTTAAA
66 GTAACTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTAAA
3041239 GCTCCTCTAA
Statistics
Matches: 218, Mismatches: 22, Indels: 14
0.86 0.09 0.06
Matches are distributed among these distances:
122 3 0.01
123 11 0.05
124 10 0.05
125 17 0.08
126 89 0.41
127 17 0.08
128 71 0.33
ACGTcount: A:0.27, C:0.13, G:0.12, T:0.48
Consensus pattern (123 bp):
CAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAG
GTAACTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTAAAATGAT
Found at i:3041068 original size:1 final size:1
Alignment explanation
Indices: 3041062--3041112 Score: 75
Period size: 1 Copynumber: 51.0 Consensus size: 1
3041052 AATAGAGGCA
* * *
3041062 TTTTTTTTTTTGTTTTTTTTTTTTTTTTTGTTTTTTTGTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
3041113 AAAAATGATC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 44 1.00
ACGTcount: A:0.00, C:0.00, G:0.06, T:0.94
Consensus pattern (1 bp):
T
Found at i:3041085 original size:18 final size:18
Alignment explanation
Indices: 3041062--3041109 Score: 87
Period size: 18 Copynumber: 2.6 Consensus size: 18
3041052 AATAGAGGCA
3041062 TTTTTTTTTTTGTTTTTT
1 TTTTTTTTTTTGTTTTTT
3041080 TTTTTTTTTTTGTTTTTT
1 TTTTTTTTTTTGTTTTTT
3041098 TGTTTTTTTTTT
1 T-TTTTTTTTTT
3041110 TTTAAAAATG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
18 19 0.66
19 10 0.34
ACGTcount: A:0.00, C:0.00, G:0.06, T:0.94
Consensus pattern (18 bp):
TTTTTTTTTTTGTTTTTT
Found at i:3041101 original size:26 final size:25
Alignment explanation
Indices: 3041062--3041112 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 25
3041052 AATAGAGGCA
3041062 TTTTTTTTTTTGTTTTTTTTTTTTT
1 TTTTTTTTTTTGTTTTTTTTTTTTT
3041087 TTTTGTTTTTTTGTTTTTTTTTTTTT
1 TTTT-TTTTTTTGTTTTTTTTTTTTT
3041113 AAAAATGATC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.00, C:0.00, G:0.06, T:0.94
Consensus pattern (25 bp):
TTTTTTTTTTTGTTTTTTTTTTTTT
Found at i:3041158 original size:128 final size:128
Alignment explanation
Indices: 3040868--3041235 Score: 514
Period size: 128 Copynumber: 2.9 Consensus size: 128
3040858 TTTTTTTTAC
* * * *
3040868 CAAAGCTCATTTAAACAGAGGCTCAACGACTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAG
1 CAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAG
* ** * *
3040933 GTAACTTTTTTTCATTTTTTTTGCTTTTTTTTTT-TTTTTTTG--CTTTTTTTTTTAAATTGAT
66 GTAACTTTTTTT-TTTTTTTTTTTTTTTTTTTTTGTTTTTTTGTTTTTTTTTTTTTAAAATGAT
* *
3040994 CAAAGCTCCTCTAAGCAGAGGTTCAATGACTTTGAGAAACATAAACAAAGCTCCTCTAAATAGAG
1 CAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAG
*
3041059 G-CA-TTTTTTTTTTTGTTTTTTTTTTTTTTTTTGTTTTTTTGTTTTTTTTTTTTTAAAAATGAT
66 GTAACTTTTTTTTTTT-TTTTTTTTTTTTTTTTTGTTTTTTTGTTTTTTTTTTTTT-AAAATGAT
*
3041122 CAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAGAAACATAAATGAAGCTCCTCTAAATAGAG
1 CAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAG
3041187 GTAACTTTTTTGTTTTTTTTTTTTTCCTATTTTTTTTGTTTTTTT-TTTT
66 GTAACTTTTTT-TTTTTTTTTTTTT--T-TTTTTTTTGTTTTTTTGTTTT
3041236 AAAGCTCCTC
Statistics
Matches: 215, Mismatches: 16, Indels: 16
0.87 0.06 0.06
Matches are distributed among these distances:
123 3 0.01
124 22 0.10
125 9 0.04
126 60 0.28
127 10 0.05
128 70 0.33
129 1 0.00
130 14 0.07
131 5 0.02
132 5 0.02
133 16 0.07
ACGTcount: A:0.26, C:0.13, G:0.12, T:0.48
Consensus pattern (128 bp):
CAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAG
GTAACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTGTTTTTTTTTTTTTAAAATGAT
Found at i:3041331 original size:42 final size:42
Alignment explanation
Indices: 3041239--3041559 Score: 463
Period size: 42 Copynumber: 7.7 Consensus size: 42
3041229 TTTTTTTAAA
* * *
3041239 GCTCCTCTAAACAGAGGCTCGACGAC-TTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
* * *
3041280 GCTCTTCTAAACAGAGGCACCATGACTTTTAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
* *
3041322 GCTCCTCTAAACAGAGGCACCATGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
*
3041364 GCTCCTCTAAACCA-AGGCACCACGAC-TTTGGAAAGTAAATT
1 GCTCCTCTAAA-CAGAGGCACCACGACTTTTGAAAAGTAAATT
*
3041405 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
* *
3041447 GCTCTTTTAAACAGAGGCACCACGAC-TTTGAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTG-AAAAGTAAATT
*
3041489 GCTCCTCTAAATAGAGGCACCACGACTTTT-AGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGA-AAAGTAAATT
3041531 GCTCCTCTAAACAGAGGCACCACGACTTT
1 GCTCCTCTAAACAGAGGCACCACGACTTT
3041560 CCCCTCTAAA
Statistics
Matches: 252, Mismatches: 21, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
40 2 0.01
41 62 0.25
42 183 0.73
43 5 0.02
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
Found at i:3041461 original size:125 final size:125
Alignment explanation
Indices: 3041239--3041646 Score: 533
Period size: 125 Copynumber: 3.4 Consensus size: 125
3041229 TTTTTTTAAA
* * * *
3041239 GCTCCTCTAAACAGAGGCTCGACGACTTTGGAAAGTAAATTGCTCTTCTAAACAGAGGCACCATG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
* * *
3041304 ACTTTTAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCATGACTTTGGAAAAGTAAATT
66 ACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
3041364 GCTCCTCTAAACCA-AGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAA-CAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
* * *
3041428 GACTTTGGAAAAGTAAATTGCTCTTTTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
65 GACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
* *
3041489 GCTCCTCTAAATAGAGGCACCACGACTTTTAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
* * * *
3041554 GAC----------T---TT-CCCCTCTAAATAGAGTCACCACGACTTTG-GAAAGTAAATT
65 GACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
3041600 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCTCC
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAGTAAATTGCTCC
3041647 CTGACAATCA
Statistics
Matches: 260, Mismatches: 20, Indels: 20
0.87 0.07 0.07
Matches are distributed among these distances:
111 55 0.21
112 24 0.09
113 2 0.01
116 1 0.00
124 1 0.00
125 135 0.52
126 42 0.16
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (125 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
ACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
Found at i:3041574 original size:28 final size:28
Alignment explanation
Indices: 3041534--3041587 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
3041524 GTAAATTGCT
3041534 CCTCTAAACAGAGGCACCACGACTTTCC
1 CCTCTAAACAGAGGCACCACGACTTTCC
* *
3041562 CCTCTAAATAGAGTCACCACGACTTT
1 CCTCTAAACAGAGGCACCACGACTTT
3041588 GGAAAGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.30, C:0.35, G:0.13, T:0.22
Consensus pattern (28 bp):
CCTCTAAACAGAGGCACCACGACTTTCC
Found at i:3041607 original size:41 final size:42
Alignment explanation
Indices: 3041562--3041646 Score: 145
Period size: 41 Copynumber: 2.0 Consensus size: 42
3041552 ACGACTTTCC
* *
3041562 CCTCTAAATAGAGTCACCACGAC-TTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
3041603 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
3041645 CC
1 CC
3041647 CTGACAATCA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
41 21 0.51
42 20 0.49
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.25
Consensus pattern (42 bp):
CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
Found at i:3041613 original size:69 final size:70
Alignment explanation
Indices: 3041492--3041628 Score: 249
Period size: 69 Copynumber: 2.0 Consensus size: 70
3041482 GTAAATTGCT
3041492 CCTCTAAATAGAGGCACCACGACTTTTAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
1 CCTCTAAATAGAGGCACCACGACTTTTAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
3041557 TTTCC
66 TTTCC
* *
3041562 CCTCTAAATAGAGTCACCACGAC-TTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
1 CCTCTAAATAGAGGCACCACGACTTTTAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
3041626 TTT
66 TTT
3041629 TGGAAAGTAA
Statistics
Matches: 65, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
69 43 0.66
70 22 0.34
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (70 bp):
CCTCTAAATAGAGGCACCACGACTTTTAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
TTTCC
Found at i:3041952 original size:43 final size:42
Alignment explanation
Indices: 3041846--3041982 Score: 136
Period size: 43 Copynumber: 3.2 Consensus size: 42
3041836 TGAAAGATCC
** * *
3041846 TCATTTGAATTTTGGAGGCTCACATCCAAAAGTT-AAAGGTTCT
1 TCATTTGAATTTTGGA-ATTCACATCCAAAAATTCAAAGCTT-T
** *
3041889 T-ATTTGGCAAACTTGGAATTCATATCCAAAAA-TCTAAAGCTTT
1 TCATTT-G-AATTTTGGAATTCACATCCAAAAATTC-AAAGCTTT
3041932 TCATTTGAATTTTGGAAATTCACATCCAAAAATTCAAAGCTTT
1 TCATTTGAATTTTGG-AATTCACATCCAAAAATTCAAAGCTTT
3041975 TCATTTGA
1 TCATTTGA
3041983 GTTCAAAGGC
Statistics
Matches: 77, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
42 11 0.14
43 47 0.61
44 19 0.25
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.36
Consensus pattern (42 bp):
TCATTTGAATTTTGGAATTCACATCCAAAAATTCAAAGCTTT
Found at i:3042214 original size:22 final size:22
Alignment explanation
Indices: 3042166--3042224 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
3042156 GGTTTCACTC
3042166 CTCAAAGATTCTCATTTTGAAAT
1 CTCAAAGATTCTCA-TTTGAAAT
**
3042189 -TCAAAGATTCTCATTTGAGTT
1 CTCAAAGATTCTCATTTGAAAT
*
3042210 CTCAAAAATTCTCAT
1 CTCAAAGATTCTCAT
3042225 CAAAACATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.19
22 26 0.81
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.39
Consensus pattern (22 bp):
CTCAAAGATTCTCATTTGAAAT
Found at i:3043315 original size:16 final size:16
Alignment explanation
Indices: 3043291--3043333 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
3043281 TCAATTTGAA
*
3043291 TCTCTTTTTTTCATTT
1 TCTCATTTTTTCATTT
**
3043307 TCTCATTTTTTTTTTT
1 TCTCATTTTTTCATTT
3043323 TCTCATTTTTT
1 TCTCATTTTTT
3043334 TCTTTTTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.07, C:0.16, G:0.00, T:0.77
Consensus pattern (16 bp):
TCTCATTTTTTCATTT
Found at i:3043334 original size:16 final size:17
Alignment explanation
Indices: 3043291--3043357 Score: 84
Period size: 17 Copynumber: 4.1 Consensus size: 17
3043281 TCAATTTGAA
*
3043291 TCTC-TTTTTTTCATTT
1 TCTCATTTTTTTCTTTT
3043307 TCTCATTTTTTT-TTTT
1 TCTCATTTTTTTCTTTT
3043323 TCTCATTTTTTTCTTTT
1 TCTCATTTTTTTCTTTT
* * *
3043340 TTTCATTCTTCTCTTTT
1 TCTCATTTTTTTCTTTT
3043357 T
1 T
3043358 TTTTCTCATT
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
16 19 0.42
17 26 0.58
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (17 bp):
TCTCATTTTTTTCTTTT
Found at i:3047431 original size:117 final size:117
Alignment explanation
Indices: 3047284--3047683 Score: 558
Period size: 117 Copynumber: 3.4 Consensus size: 117
3047274 TCTTGTGTAG
* *
3047284 GGAAAATTGATAGTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTTTAGGAAAATT
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTTAAGGAAAATT
3047349 GATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTTGATTTTCAA
66 GATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTTGATTTTCAA
*
3047401 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAAGGAAAATT
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTTAAGGAAAATT
*
3047466 GATACTTTCAACATTTCCCCAAAAATATTTTTTTTGAAAA-TTT-A-TTTCAAA
66 GATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTGAAAATTTTGATTTTC-AA
* *
3047517 GGAAAATTGGTACTTTCAACTTTT-CCTCAAAAATCCCTTTTTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAA------TATTTTTTTG-AAATTTATTTTTAA
* * **
3047581 GGAAAATTGATACTTTCAACTTTTACCTAAAAATA-TTTTTCAAAAATTTTGATTTTCAA
58 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTTGATTTTCAA
* *
3047640 GGAAGATTGATACTTTCAACTTTTCCCCAAAAATAGTTTTTTTG
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTTG
3047684 GAACTTTTGA
Statistics
Matches: 252, Mismatches: 16, Indels: 29
0.85 0.05 0.10
Matches are distributed among these distances:
115 7 0.03
116 31 0.12
117 92 0.37
118 20 0.08
121 9 0.04
122 11 0.04
123 76 0.30
124 6 0.02
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.45
Consensus pattern (117 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTTAAGGAAAATT
GATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTTGATTTTCAA
Found at i:3047499 original size:59 final size:58
Alignment explanation
Indices: 3047284--3047683 Score: 509
Period size: 59 Copynumber: 6.7 Consensus size: 58
3047274 TCTTGTGTAG
* * *
3047284 GGAAAATTGATAGTTTCAACTTTTCCCTAAAAATATTTTTTTG-AAATTTATTTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAA
*
3047341 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAA-TTT-ATTTTTAA
* *
3047401 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAA
* **
3047458 GGAAAATTGATACTTTCAACATTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTGAAAATTTATTTTTAA
* * *
3047517 GGAAAATTGGTACTTTCAACTTTTCCTCAAAAATCCCTTTTTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA------TATTTTTTTGAAAATTTATTTTTAA
* * ** *
3047581 GGAAAATTGATACTTTCAACTTTTACCTAAAAATA-TTTTTCAAAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAA-TTT-ATTTTTAA
*
3047640 GGAAGATTGATACTTTCAACTTTTCCCCAAAAATAGTTTTTTTG
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTG
3047684 GAACTTTTGA
Statistics
Matches: 297, Mismatches: 31, Indels: 26
0.84 0.09 0.07
Matches are distributed among these distances:
57 90 0.30
58 10 0.03
59 101 0.34
60 40 0.13
61 5 0.02
64 50 0.17
65 1 0.00
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.45
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAA
Found at i:3047594 original size:123 final size:123
Alignment explanation
Indices: 3047436--3047673 Score: 347
Period size: 123 Copynumber: 1.9 Consensus size: 123
3047426 CCTAAAAATA
* * *
3047436 TTTTTTGGAAATTTATTTTTAAGGAAAATTGATACTTTCAACATTTCCCCAAAAATATTTTTTTT
1 TTTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTCAACATTTACCCAAAAATA--TTTTTC
* * *
3047501 GAAAA-TTT-A-TTTCAAAGGAAAATTGGTACTTTCAACTTTTCCTCAAAAATCCCTTTTT
64 AAAAATTTTGATTTTC-AAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATCCCTTTTT
* *
3047559 TTTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTCAACTTTTACCTAAAAATATTTTTCAA
1 TTTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTCAACATTTACCCAAAAATATTTTTCAA
*
3047624 AAATTTTGATTTTCAAGGAAGATTGATACTTTCAACTTTTCCCCAAAAAT
66 AAATTTTGATTTTCAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAAT
3047674 AGTTTTTTTG
Statistics
Matches: 103, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
121 9 0.09
122 3 0.03
123 87 0.84
124 4 0.04
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.44
Consensus pattern (123 bp):
TTTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTCAACATTTACCCAAAAATATTTTTCAA
AAATTTTGATTTTCAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATCCCTTTTT
Found at i:3047727 original size:17 final size:17
Alignment explanation
Indices: 3047702--3047760 Score: 61
Period size: 17 Copynumber: 3.5 Consensus size: 17
3047692 GATTTTTATT
3047702 TAAAG-AAAATAGAATAA
1 TAAAGAAAAATAGAA-AA
*
3047719 TAAAAAAAAAGT-GAAAA
1 TAAAGAAAAA-TAGAAAA
*
3047736 TAAATAAAAATA-AAAA
1 TAAAGAAAAATAGAAAA
3047752 TAAAGAAAA
1 TAAAGAAAA
3047761 GTAAAACAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
16 13 0.36
17 15 0.42
18 7 0.19
19 1 0.03
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.15
Consensus pattern (17 bp):
TAAAGAAAAATAGAAAA
Found at i:3047735 original size:25 final size:23
Alignment explanation
Indices: 3047706--3047751 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 23
3047696 TTTATTTAAA
3047706 GAAAATAGAATAATAAAAAAAAAGT
1 GAAAATA-AATAA-AAAAAAAAAGT
*
3047731 GAAAATAAATAAAAATAAAAA
1 GAAAATAAATAAAAAAAAAAA
3047752 TAAAGAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 8 0.40
24 5 0.25
25 7 0.35
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (23 bp):
GAAAATAAATAAAAAAAAAAAGT
Found at i:3047744 original size:16 final size:16
Alignment explanation
Indices: 3047725--3047777 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
3047715 ATAATAAAAA
*
3047725 AAAAGTGAAAATAAAT
1 AAAAGTAAAAATAAAT
* *
3047741 AAAAATAAAAATAAAG
1 AAAAGTAAAAATAAAT
*
3047757 AAAAGTAAAACAAAAAT
1 AAAAGTAAAA-ATAAAT
3047774 AAAA
1 AAAA
3047778 ATAAGATAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
16 22 0.73
17 8 0.27
ACGTcount: A:0.77, C:0.02, G:0.08, T:0.13
Consensus pattern (16 bp):
AAAAGTAAAAATAAAT
Found at i:3047748 original size:6 final size:6
Alignment explanation
Indices: 3047707--3047795 Score: 51
Period size: 6 Copynumber: 14.7 Consensus size: 6
3047697 TTATTTAAAG
* *
3047707 AAAATA GAATAATA AAAA-A AAAGTG AAAAT- -AAATA AAAATA AAAATA
1 AAAATA -AA-AATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
* * * *
3047754 AAGAAAA GTAAAACA AAAATA AAAAT- AAGATA AAGATA AAAA
1 AA-AATA --AAAATA AAAATA AAAATA AAAATA AAAATA AAAA
3047796 ATATTAAATA
Statistics
Matches: 66, Mismatches: 8, Indels: 17
0.73 0.09 0.19
Matches are distributed among these distances:
4 4 0.06
5 8 0.12
6 38 0.58
7 7 0.11
8 7 0.11
9 2 0.03
ACGTcount: A:0.76, C:0.01, G:0.08, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:3047755 original size:33 final size:34
Alignment explanation
Indices: 3047707--3047786 Score: 92
Period size: 33 Copynumber: 2.3 Consensus size: 34
3047697 TTATTTAAAG
* *
3047707 AAAATAGAATAATAAAAAAAAAGTGAAA-ATAAATA
1 AAAATA-AATAAT-AAAAAAAAGTAAAACAAAAATA
*
3047742 AAAATAAA-AATAAAGAAAAGTAAAACAAAAATA
1 AAAATAAATAATAAAAAAAAGTAAAACAAAAATA
3047775 AAAATAAGATAA
1 AAAATAA-ATAA
3047787 AGATAAAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
32 12 0.31
33 16 0.41
34 3 0.08
35 8 0.21
ACGTcount: A:0.76, C:0.01, G:0.07, T:0.15
Consensus pattern (34 bp):
AAAATAAATAATAAAAAAAAGTAAAACAAAAATA
Found at i:3047756 original size:27 final size:27
Alignment explanation
Indices: 3047703--3047794 Score: 84
Period size: 27 Copynumber: 3.3 Consensus size: 27
3047693 ATTTTTATTT
*
3047703 AAAG-AAAATAGAATAATAAAAAAAAAGTGA
1 AAAGTAAAATA-AA-AATAAAAATAAA--GA
3047733 AAA-T-AAATAAAAATAAAAATAAAGA
1 AAAGTAAAATAAAAATAAAAATAAAGA
*
3047758 AAAGTAAAACAAAAATAAAAAT-AAGA
1 AAAGTAAAATAAAAATAAAAATAAAGA
3047784 TAAAGATAAAA
1 -AAAG-TAAAA
3047795 AATATTAAAT
Statistics
Matches: 55, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
25 5 0.09
26 5 0.09
27 30 0.55
28 7 0.13
29 5 0.09
30 3 0.05
ACGTcount: A:0.76, C:0.01, G:0.09, T:0.14
Consensus pattern (27 bp):
AAAGTAAAATAAAAATAAAAATAAAGA
Found at i:3047786 original size:11 final size:11
Alignment explanation
Indices: 3047717--3047794 Score: 56
Period size: 11 Copynumber: 7.2 Consensus size: 11
3047707 AAAATAGAAT
3047717 AATAAAAA-AA
1 AATAAAAATAA
*
3047727 AAGTGAAAAT-A
1 AA-TAAAAATAA
3047738 AATAAAAATAAA
1 AATAAAAAT-AA
*
3047750 AATAAAGA-AA
1 AATAAAAATAA
*
3047760 AGTAAAACA-AA
1 AATAAAA-ATAA
3047771 AATAAAAATAA
1 AATAAAAATAA
* *
3047782 GATAAAGATAA
1 AATAAAAATAA
3047793 AA
1 AA
3047795 AATATTAAAT
Statistics
Matches: 53, Mismatches: 9, Indels: 11
0.73 0.12 0.15
Matches are distributed among these distances:
10 16 0.30
11 29 0.55
12 8 0.15
ACGTcount: A:0.77, C:0.01, G:0.08, T:0.14
Consensus pattern (11 bp):
AATAAAAATAA
Found at i:3047824 original size:4 final size:4
Alignment explanation
Indices: 3047817--3047867 Score: 50
Period size: 4 Copynumber: 12.5 Consensus size: 4
3047807 AACCTAATCT
* * *
3047817 AATA AATA TAA-A AACA AATAA AATA AACA AATA AATA AACA AATA AATA
1 AATA AATA -AATA AATA AAT-A AATA AATA AATA AATA AATA AATA AATA
3047866 AA
1 AA
3047868 AAAAATTCAA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
3 2 0.05
4 31 0.79
5 6 0.15
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (4 bp):
AATA
Found at i:3047852 original size:12 final size:12
Alignment explanation
Indices: 3047828--3047867 Score: 71
Period size: 12 Copynumber: 3.2 Consensus size: 12
3047818 ATAAATATAA
3047828 AAACAAATAAAAT
1 AAACAAAT-AAAT
3047841 AAACAAATAAAT
1 AAACAAATAAAT
3047853 AAACAAATAAAT
1 AAACAAATAAAT
3047865 AAA
1 AAA
3047868 AAAAATTCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 19 0.70
13 8 0.30
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (12 bp):
AAACAAATAAAT
Found at i:3047873 original size:25 final size:25
Alignment explanation
Indices: 3047718--3047871 Score: 77
Period size: 27 Copynumber: 6.0 Consensus size: 25
3047708 AAATAGAATA
*
3047718 ATAAAAAAAAAGTGAAAATAAATAAAA-
1 ATAAAAACAAA-T-AAAATAAA-AAAAT
* * *
3047745 ATAAAAATAAAGAAAAGTAAAACAAAA
1 ATAAAAACAAATAAAA-TAAAA-AAAT
*
3047772 ATAAAAATAAGATAAAGAT-AAAAAAT
1 ATAAAAACAA-ATAAA-ATAAAAAAAT
* ** *
3047798 ATTAAATAA-AACCTAATCT-AATAAAT
1 A-TAAA-AACAA-ATAAAATAAAAAAAT
*
3047824 ATAAAAACAAATAAAATAAACAAAT
1 ATAAAAACAAATAAAATAAAAAAAT
3047849 A-AATAAACAAAT-AAATAAAAAAA
1 ATAA-AAACAAATAAAATAAAAAAA
3047872 ATTCAAAAAA
Statistics
Matches: 103, Mismatches: 14, Indels: 23
0.74 0.10 0.16
Matches are distributed among these distances:
24 18 0.17
25 26 0.25
26 19 0.18
27 32 0.31
28 7 0.07
29 1 0.01
ACGTcount: A:0.74, C:0.05, G:0.04, T:0.18
Consensus pattern (25 bp):
ATAAAAACAAATAAAATAAAAAAAT
Done.