Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 22 of 129
Found at i:3048769 original size:26 final size:28
Alignment explanation
Indices: 3048692--3048867 Score: 116
Period size: 29 Copynumber: 6.1 Consensus size: 28
3048682 TCAGCCCTCC
3048692 AAAATA-A-AAATCAAATAAATAAAAA-A
1 AAAATATATAAAT-AAATAAATAAAAATA
* * *
3048718 ATAATAGATAATTAGAA-AAGATAATAAA-A
1 AAAATATATAAATA-AATAA-ATAA-AAATA
3048747 AAAATATTATAGAATAAA-AAATAAAAATA
1 AAAATA-TATA-AATAAATAAATAAAAATA
*
3048776 AAAATATATAATTAAATAAATAAAAATACA
1 AAAATATATAAATAAATAAATAAAAAT--A
* *
3048806 AAAATAAATAAAATAAA-AAATAATAATAA
1 AAAATATAT-AAATAAATAAATAAAAAT-A
3048835 AAAATATATTATTAAT-AATAAATAAATAATA
1 AAAATATA-TA--AATAAATAAATAAA-AATA
3048866 AA
1 AA
3048868 TACATAGGAT
Statistics
Matches: 121, Mismatches: 12, Indels: 29
0.75 0.07 0.18
Matches are distributed among these distances:
26 5 0.04
27 9 0.07
28 26 0.21
29 29 0.24
30 28 0.23
31 21 0.17
32 3 0.02
ACGTcount: A:0.72, C:0.01, G:0.02, T:0.24
Consensus pattern (28 bp):
AAAATATATAAATAAATAAATAAAAATA
Found at i:3048774 original size:6 final size:6
Alignment explanation
Indices: 3048763--3048918 Score: 63
Period size: 6 Copynumber: 25.0 Consensus size: 6
3048753 TTATAGAATA
* *
3048763 AAAAAT AAAAAT AAAAAT ATATAATT AAATAAAT AAAAAT ACAAAA- ATAAAT
1 AAAAAT AAAAAT AAAAAT A-A-AAAT -AA-AAAT AAAAAT A-AAAAT AAAAAT
* * * **
3048815 -AAAAT AAAAAAT AATAAT AAAAA- ATATATT ATTAAT AATAAAT AAATAAT
1 AAAAAT -AAAAAT AAAAAT AAAAAT A-AAAAT AAAAAT AA-AAAT AAA-AAT
** * *
3048865 AAATACAT -AGGAT ATACAT -AAAAT ATAAAAT -AAAAT AAAAAT AAAAAT
1 AAA-A-AT AAAAAT AAAAAT AAAAAT A-AAAAT AAAAAT AAAAAT AAAAAT
3048913 AAAAAT
1 AAAAAT
3048919 GATAAAGATA
Statistics
Matches: 115, Mismatches: 19, Indels: 32
0.69 0.11 0.19
Matches are distributed among these distances:
5 18 0.16
6 54 0.47
7 32 0.28
8 10 0.09
9 1 0.01
ACGTcount: A:0.72, C:0.02, G:0.01, T:0.25
Consensus pattern (6 bp):
AAAAAT
Found at i:3048799 original size:22 final size:21
Alignment explanation
Indices: 3048771--3048913 Score: 78
Period size: 22 Copynumber: 6.5 Consensus size: 21
3048761 TAAAAAATAA
3048771 AAATAAAAATATATAATTAAAT
1 AAATAAAAATATATAA-TAAAT
* *
3048793 AAATAAAAATACAAAAATAAAT
1 AAATAAAAATA-TATAATAAAT
3048815 AAAATAAAAA-ATAATAATAAA-
1 -AAATAAAAATAT-ATAATAAAT
* *
3048836 AAAT-ATATTATTAATAATAAAT
1 AAATAAAAATA-T-ATAATAAAT
* ** *
3048858 AAATAATAAATACATAGGATAT
1 AAATAA-AAATATATAATAAAT
* *
3048880 ACAT-AAAATATAAAATAAAAT
1 AAATAAAAATATATAAT-AAAT
3048901 AAAAATAAAAATA
1 --AAATAAAAATA
3048914 AAAATGATAA
Statistics
Matches: 90, Mismatches: 19, Indels: 22
0.69 0.15 0.17
Matches are distributed among these distances:
19 2 0.02
20 12 0.13
21 14 0.16
22 37 0.41
23 16 0.18
24 9 0.10
ACGTcount: A:0.71, C:0.02, G:0.01, T:0.26
Consensus pattern (21 bp):
AAATAAAAATATATAATAAAT
Found at i:3048827 original size:58 final size:58
Alignment explanation
Indices: 3048693--3048867 Score: 169
Period size: 58 Copynumber: 2.9 Consensus size: 58
3048683 CAGCCCTCCA
* * *
3048693 AAATAAAAATCAAATAAATAAAAA-AATAATAGATAATTAGAA-AAGATAATAA-AAAAAAT
1 AAAT-AAAAT-AAA-AAATAAAAATAAAAATATATAATTAGAATAA-ATAAAAATAAAAAAT
* *
3048752 ATTATAGAATAAAAAATAAAAATAAAAATATATAATTA-AATAAATAAAAATACAAAAAT
1 A-AATAAAATAAAAAATAAAAATAAAAATATATAATTAGAATAAATAAAAATA-AAAAAT
* * *
3048811 AAATAAAATAAAAAATAATAATAAAAAATATATTATTAATAATAAATAAATAATAAA
1 AAATAAAATAAAAAATAAAAAT-AAAAATATATAATT-AGAATAAATAAA-AATAAA
3048868 TACATAGGAT
Statistics
Matches: 98, Mismatches: 9, Indels: 16
0.80 0.07 0.13
Matches are distributed among these distances:
57 17 0.17
58 37 0.38
59 25 0.26
60 3 0.03
61 12 0.12
62 4 0.04
ACGTcount: A:0.72, C:0.01, G:0.02, T:0.25
Consensus pattern (58 bp):
AAATAAAATAAAAAATAAAAATAAAAATATATAATTAGAATAAATAAAAATAAAAAAT
Found at i:3048866 original size:45 final size:46
Alignment explanation
Indices: 3048738--3048917 Score: 140
Period size: 46 Copynumber: 3.9 Consensus size: 46
3048728 ATTAGAAAAG
* * *
3048738 ATAATAAAAAAAATATTATAGAATAAAAAATAAAAAT-AAAAATAT
1 ATAATAAAAAATATATTATACAATAATAAATAAAAATAAAAAATAT
** *
3048783 ATAATTAAATAAATA-AAAATACAAAAATAAAT-AAAATAAAAAATA-
1 ATAA-TAAA-AAATATATTATACAATAATAAATAAAAATAAAAAATAT
* * *
3048828 ATAATAAAAAATATATTAT-TAATAATAAATAAATAATAAATACATAGG
1 ATAATAAAAAATATATTATACAATAATAAATAAA-AATAAA-AAATA-T
** *
3048876 AT-ATACATAAAATATAAAATAAAATAA-AAATAAAAATAAAAA
1 ATAATA-A-AAAATATATTATACAATAATAAATAAAAATAAAAA
3048918 TGATAAAGAT
Statistics
Matches: 108, Mismatches: 15, Indels: 22
0.74 0.10 0.15
Matches are distributed among these distances:
43 14 0.13
44 9 0.08
45 19 0.18
46 27 0.25
47 8 0.07
48 9 0.08
49 17 0.16
50 5 0.05
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.25
Consensus pattern (46 bp):
ATAATAAAAAATATATTATACAATAATAAATAAAAATAAAAAATAT
Found at i:3048929 original size:15 final size:13
Alignment explanation
Indices: 3048741--3048931 Score: 61
Period size: 14 Copynumber: 13.8 Consensus size: 13
3048731 AGAAAAGATA
3048741 ATAAAA-AAAATATT
1 ATAAAATAAAA-A-T
*
3048755 ATAGAATAAAAA-
1 ATAAAATAAAAAT
3048767 ATAAAAATAAAAAT
1 AT-AAAATAAAAAT
*
3048781 ATATAATTAAATAA-
1 ATA-AAATAAA-AAT
3048795 ATAAAAATACAAAAAT
1 AT-AAAAT--AAAAAT
3048811 AAATAAAATAAAAA-
1 --ATAAAATAAAAAT
3048825 ATAATAATAAAAAAT
1 ATAA-AAT-AAAAAT
* * *
3048840 ATATTATTAATAAT
1 ATA-AAATAAAAAT
*
3048854 AAATAAATAATAAAT
1 ATA-AAATAA-AAAT
* * ** * * *
3048869 ACATAGGATATAC
1 ATAAAATAAAAAT
*
3048882 ATAAAATATAAA-
1 ATAAAATAAAAAT
3048894 ATAAAATAAAAAT
1 ATAAAATAAAAAT
3048907 A-AAAATAAAAAT
1 ATAAAATAAAAAT
3048919 GATAAAGATAAAA
1 -ATAAA-ATAAAA
3048932 TTGGACCTAC
Statistics
Matches: 133, Mismatches: 24, Indels: 39
0.68 0.12 0.20
Matches are distributed among these distances:
12 28 0.21
13 24 0.18
14 41 0.31
15 30 0.23
16 3 0.02
17 5 0.04
18 2 0.02
ACGTcount: A:0.71, C:0.02, G:0.03, T:0.25
Consensus pattern (13 bp):
ATAAAATAAAAAT
Found at i:3051580 original size:26 final size:26
Alignment explanation
Indices: 3051550--3051602 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3051540 GTTGACTTAG
*
3051550 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
3051576 GCATACGGAGTTCATTCTCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3051602 G
1 G
3051603 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:3054460 original size:722 final size:716
Alignment explanation
Indices: 3052415--3054462 Score: 3065
Period size: 710 Copynumber: 2.9 Consensus size: 716
3052405 GGGCTACGGT
** * * *
3052415 AGCACATAATGGGCTCGGGCATGTGCTGGTGCCATAATTTTCTTCGTCGGGGCACCTTCACCGGA
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATAATTTTCTTCGTC-AGGCACCATCGCCGGA
* * *
3052480 GCATCGTCGGAGAACCTAACCGGCGGCATTGGGGTTTCGATGATCGGGGGGGCCAGGGGGTGTGC
65 GCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGC
* *
3052545 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAACCC
130 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
3052610 TCGAGAACTCACACCCCCTTATAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
195 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
3052675 AGTGTCTAAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGC
260 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGC
*
3052740 TGAATTGTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT
325 TGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT
*
3052805 CCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
390 CCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
* *
3052870 ACGAGTCGTCTTGCCTTGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
455 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
3052935 ATAAAAATGGCATTGGCATGCAAAAATCTGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
520 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA-CTACCACCCTATCGAT
* * * * ***
3053000 CCACGGCTTGCGCATCCCGTCTCTCTGCCCGGTGTAGTCTTTGCCCGCCAGCCCGCCCGCTCATT
584 CCACGACTTGCGCATCCCGTCTCTCTGGCCGGTATAGCCCCCGCCCGCCAGCCCGCCCGCTCATT
* * * *
3053065 TCATCAGTTGGCTTAGGCATACGGAGTTCATTCTTAGTCTAAGATCGGATCAGGCCGAGGGTTGG
649 TCATCAGTTGGCTTAGGCATACGGACTTCATTCCTAGTCTAAGATCAGATCAGGCCGAGGGTTGC
3053130 GGC
714 GGC
* * ** * *
3053133 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGAGGCACAATCGCCAGA
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATAATTTTCTTCGTC-AGGCACCATCGCCGGA
* * * * * *
3053198 GCATTGTTGGAGAACTTGACCGACGGCATTGGGGTTCC-AGCGATC-----GG--GGTGGGTGTG
65 GCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-TGATCGGGGGGGCCGGGGGGTGTG
*
3053255 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAAC
129 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
3053320 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
194 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
3053385 AAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
259 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAG
* * * * *
3053450 CTAAATTTTTTTGTGCATGCCAA-AAAATTACAAGGATCAGGTCTACCACGTTTGGGGCCAAAAA
324 CTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA
* * *
3053514 TCCTTCCGAAAAAATTTGAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATTGTGAAAAATAGAA
389 TCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAA
3053579 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
454 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
3053644 CATAAAAATGGAATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGA
519 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC-TACCACCCTATCGA
* * * * * * *
3053709 TCCACGACTCGTGCATCCCATCTCTCTGGCTGTTATAATGGCCACCCGTCCGCCTGCCCGCCCGC
583 TCCACGACTTGCGCATCCCGTCTCTCTGGCCGGTAT-A--GCC-CCCGCCCGCCAGCCCGCCCGC
* * * * *
3053774 TTATTTCGTCGGTTGGCTTGGGCATACGGACTTCATTCCTAGTCTAAGATCAGA-CAGGACTGAG
644 TCATTTCATCAGTTGGCTTAGGCATACGGACTTCATTCCTAGTCTAAGATCAGATCAGG-CCGAG
3053838 GGTTGCGGC
708 GGTTGCGGC
* * *
3053847 AGCACATGCTGGGCTCGCGCATGTGCTGGTGCCACAATTTTCTTCGTCAGTGCACCATCGTCGGA
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATAATTTTCTTCGTCAG-GCACCATCGCCGGA
* *
3053912 GCGTCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGC
65 GCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGC
* * * *
3053977 GCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCTCCTATCTCTCATCAAACC
130 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
3054042 TCAAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
195 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
3054107 AGTATTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGC
260 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGC
* * *
3054172 TGAATTTTTTTGTACATGCCAACAAAAATACAATGATCACGTCTACCAAGTTTAGGGCCAAAACT
325 TGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT
* *
3054237 CCTTCCGAAAAAGTTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
390 CCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
* * *
3054302 ACGAGTCGTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGCCCATTGTATAAATTTACAAGCC
455 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
3054367 ATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCATCTACCACTCTATCGAT
520 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA-CTACCACCCTATCGAT
*
3054432 ACACGACTTGCGCATCCCGT-TGCTCTGGCCG
584 CCACGACTTGCGCATCCCGTCT-CTCTGGCCG
3054463 ACGTAATGCC
Statistics
Matches: 1189, Mismatches: 122, Indels: 34
0.88 0.09 0.03
Matches are distributed among these distances:
709 1 0.00
710 248 0.21
711 216 0.18
713 10 0.01
714 164 0.14
715 1 0.00
717 1 0.00
718 90 0.08
719 2 0.00
721 214 0.18
722 241 0.20
723 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (716 bp):
AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATAATTTTCTTCGTCAGGCACCATCGCCGGAG
CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCG
CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT
GAATTTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATC
CTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACTACCACCCTATCGATCC
ACGACTTGCGCATCCCGTCTCTCTGGCCGGTATAGCCCCCGCCCGCCAGCCCGCCCGCTCATTTC
ATCAGTTGGCTTAGGCATACGGACTTCATTCCTAGTCTAAGATCAGATCAGGCCGAGGGTTGCGG
C
Found at i:3055590 original size:26 final size:26
Alignment explanation
Indices: 3055554--3055606 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3055544 GTTGATTTAG
3055554 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
3055580 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3055606 G
1 G
3055607 ATCGGACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:3055684 original size:894 final size:889
Alignment explanation
Indices: 3053795--3058451 Score: 4367
Period size: 894 Copynumber: 5.1 Consensus size: 889
3053785 GTTGGCTTGG
* * * * *
3053795 GCATACGGACTTCATTCCTAGTCTAAGATCAGA-CAGGACTGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA-GACCGAAGGTTGCGGCAGCACATGCTGG
* * * * * *
3053859 GCTCGCGCATGTGCTGGTGCCACAATTTTCTTCGTCAGTGCACCATCGTCGGAGCGTCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCA---T-----CG-C--CGGAG
* * * *
3053924 AACCTGACTGGCGGCATTGGGGTTCCGATGA-TCGGGGGGGCCGGGGGGTGTGCGCAAATGATGT
119 AACCTGACCGACGGCATTGGGGTTCCGACGATTC-GGGGGG-CGGGGGGTGTGCGCACATGATGT
* * * *
3053988 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCTCCTATCTCTCATCAAACCTCAAGAACTCA
182 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
3054053 CACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATTTGAAA
247 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
3054118 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTT
312 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTG-ATTTTTTT
* * * *
3054183 GTACATGCCAACAAAAATACAATGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAA
376 TTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
3054248 AGTTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
441 AATTTTAAAAAATCTCGAACCGCAAAAA-TTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
3054313 TACCATGAAACTTCACGTGAAGGCTTAAGGGCCCATTGTATAAATTTACAAGCCATAAAAATGGC
505 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
3054378 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCA-TCTACCACTCTATCGATACACGACTTG
570 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCCTACCACCCTATCGATCCACGACTTG
* *
3054442 CGCATCCCGT-TGCTCTGGCCGACGTAAT----------GCCTGCCCG--CTCGTTTCGTCGGTT
635 CGCATCCCGTCT-CTCTGGCCGACGTAGTGCCGCCGCCCGCCTGCCCGTTCTCGTTTCATCGGTT
* * * * * * * *
3054494 GGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGATCGAATTGAAGGTTAC-GATAGCAG
699 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCAG-CAGCAG
* * * * ** ** * *
3054558 GATTGGTAGCACGCAGAGGGGGACCC-GGTCGATCCCCGGCTTGCACCTCTCGCCCCTCTGGGTG
763 GATCGGCAACACGTAGAGGGGGACCCAGACCGATCCCCGGCTTGTGCATC-CACCCCTCT-GGTG
* * * *
3054622 GCTGAGC-ATCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
826 GTTGAGCGA-CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
3054686 GCATACTGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAAGGTTACGGCAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGGCAGCACATGCTGGG
* * * *
3054751 CTCGGGCATTTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGAACCTGACCGAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGAACCTGACCGAC
* * *
3054816 GGCATTGGGGTTCCGACGATTGGGGGGGTCAAGGGGGTGTGCGCACATGATGTGCGATGGGTGCG
131 GGCATTGGGGTTCCGACGATTCGGGGGG-C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
3054881 GGTACTTGGCCGTTATACTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
194 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
3054946 GAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTT-AAATGGGGACACTT
259 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TTGAAATGGGGACACTT
* * *
3055010 TTTTCAAATGGTGA-ACAAATCTTGTACACTTTGAGTTTTTAGCT-ATTTTTTTTTGCGTGCCAA
323 TTTTCAAATGGTCACA-AAATCTTGTACACTTTGATTTTTTAGCTGATTTTTTTTTGCATGCCAA
* ** *
3055073 CAAAAATACAAGGATCATGTCTATGAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAA
387 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * * * * *
3055138 ATCTCGAACCGTAAAAATTTCAAAAATCAAGAAAAATAAAAAATGAGTTGTCTTGCCATGAAACT
452 ATCTCGAACCGCAAAAATTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* **
3055203 TCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAACACGTAG
517 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
* * *
3055268 AAATATGAAGATGTGCCTAAACCCA-CATACCACCCTATCGATCAACGACTTGCGTATCCCGTCT
582 AAATATGAAGATGTGCCTAAACCCACCCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCT
* *
3055332 CTCTGGCCGACGTAGTGCTCGTCCGCCCGCCTGCCCGTCTTCTCGTTTCATCGATTGGCTTTGGC
647 CTCTGGCCGACGTAGTGC-CG-CCGCCCGCCTGCCCG--TTCTCGTTTCATCGGTTGGCTTAGGC
* * * *
3055397 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATTGAGGGTTGCAGCAGCAGCATCGACAAC
708 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCAGCAGCAGGATCGGCAAC
*
3055462 CCGTAGAGGGGGACCCAG-CCGATCCCCGGCTTGTGCATCCTACCCCTCTGGCTGGTTGAGCGAC
773 ACGTAGAGGGGGACCCAGACCGATCCCCGGCTTGTGCATCC-ACCCCTCTGG-TGGTTGAGCGAC
* * * *
3055526 CACACGCTCGTTTCGTGGGTTGATTTAGGCATACGGAGTTCATTCCCAATCTAA
836 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
3055580 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCTGACCGAAGGTTACGGTAGCACATGCCAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGGCAGCACATGCTGGG
* * * *
3055645 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCATCATCTCCGGAGCATCGTCGA-CG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAG-AACCT-GACCG
* * * * *
3055709 GCGGCATTGGTGTTCCGACGA-TCGGGGGGTCGGGAGGTGTGCACACATGATGTGCAATGGGTGC
129 ACGGCATTGGGGTTCCGACGATTCGGGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * * *
3055773 TGGTACTTGGCCATTATATTGGTCCCCTACCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
193 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
3055838 AGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAAGGGGACACTT
258 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACAC-T
*
3055903 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTGTGCATGCCA
322 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGATTTTTTTT-TGCATGCCA
* * * * *
3055968 AAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCGAAAA-TGCCATCCGAAAAAATTTAAAA
386 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAATTTTAAA
** * * *
3056032 AAATC-CTGAATTGCAAAACGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCTTGA
450 AAATCTC-GAACCGCAAAA-ATTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC---A
* *
3056096 TGAAACTTCACATGAAGGGTTAAGGGACCATTGTATTGAATTTACCAAGCCATTAAAAATTGGCA
510 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA-TGAATTTA-CAAGCCA-TAAAAA-TGGCA
** * * * * * *
3056161 TTTTCCATGCAAGGAATATG-AGATGTGCCTAAA-CCAGCCTTCCA-CCTATCCGATCCACGGGC
571 -TTGGCACG-TAGAAATATGAAGATGTGCCTAAACCCACCCTACCACCCTAT-CGATCCAC-GAC
* * * * * * ** * *
3056223 TTGCGCAATCTCATTTCTCT-GCTGACATAATGCC-CAC-CCCGCCCAACCCG--CACATTTCAT
632 TTGCGC-ATCCCGTCTCTCTGGCCGACGTAGTGCCGC-CGCCCG-CCTGCCCGTTCTCGTTTCA-
* *
3056283 TCGGTCGGCTTTAGGCATAACGGAGTTCATTTCCCAGTCTTAA-ATCAGGACTGGGATCGAGGGT
693 TCGGTTGGC-TTAGGCAT-ACGGAGTTCA-TTCCCAGTC-TAAGATC-GGAC-CGGATCGAGGGT
* * * * *
3056347 TGCTGCAGCAGGATCGGGGC-ACGCG-A-AGGAGGGA-CCTGACCGAAT-CCCTGCTTGAAGCAT
752 TGCAGCAGCAGGATC--GGCAACACGTAGAGG-GGGACCCAGACCG-ATCCCCGGCTTG-TGCAT
* *
3056407 CC-CGCCCTCTGGTCGGTTGAGTGCCCGGCACGCT--TTTCATGGGTTGACTTAGGCATAC-GAG
812 CCAC-CCCTCTGGT-GGTTGAGCGACC-GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
*
3056468 TTCATTCCCAGGTCAAA
874 TTCATTCCCA-GTCTAA
* *
3056485 G-AT-CGGA----A-T--CAG-----G-T----CC-GA--G--GGTTGGCGACAGCAAAT-CTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTT-GCGGCAGCACATGC-TG
* * *
3056525 GGCTCGAGCATGTGCTTAGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCG
64 GGCTCGGGCATGTGC-T-GGTGCCGCATTTTTCTTCATCGGGGCACCAT---C---GC--CG--G
* * *
3056590 AAGAACCTGACTGACGGCATTGGGGTT-CGATGATT-GGGGGGCCGAGGGGGGTGTGCGCACACG
117 -AGAACCTGACCGACGGCATTGGGGTTCCGACGATTCGGGGGG-C--GGGGGGTGTGCGCACATG
* *
3056653 ATGTGTGATGGGTGCTGGTAC-TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
178 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
3056717 CTCACACCCCCTTATAGAGC-TATTGAGATTTTACAGGTTTGCTGCCAGTAG-CATTAAAGTGTT
243 CTCACACCCCCTTAAAGAGCAT-TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-T
* * *
3056780 TTGAAATAGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAAGCTGAA
306 TTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTT-AGCTG-A
* * *
3056845 TTTTTTTCTGCATGCCAAGAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAA-TGCCT
369 TTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CC-
* * * *
3056909 TTTCAAAAAAAGTTTTAAAAAATCATCGAACCGCAAAAGTTTTAAAAATCGTGAAAAAAATAGAA
432 TTCCGAAAAAA-TTTTAAAAAATC-TCGAACCGCAAAAATTTTAAAAATCATG--AAAAATAGAA
* *
3056974 AACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTCAAGGGGACCATTGTATGAATTTACAAG
493 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGGACCATTGTATGAATTTACAA-
* ** *
3057039 GCCATAAAAAATTGGCATTTGCACGCTATTAATATGAAGATGTGCCTAAACCCACCCTACCACCA
556 GCCAT-AAAAA-TGGCATTGGCACG-TAGAAATATGAAGATGTGCCTAAACCCACCCTACCACCC
* * * *
3057104 TATCGATCCACGGACTTGCACATCCCGTCTCTACTGGCCGGGCATAGTGCCCGCC-CCGGCCTGC
618 TATCGATCCAC-GACTTGCGCATCCCGTCTCT-CTGGCC-GACGTAGTG-CCGCCGCCCGCCTGC
** * * * * ** * *
3057168 CCGCAGCCGTTGTTTCGTCTGTTGGCCTAGGGCATACCGGTTTTCATTCCCAAGTCTAAGAGCAG
679 CCG--TTC-TCGTTTCATCGGTTGGCTTA-GGCATA-CGGAGTTCATTCCC-AGTCTAAGATCGG
* * * *
3057233 ACTGG-TCGAGGGTTGTAGTAGCAGGATCGGTAGCATATGGCA-GAAGAGAGGGGACGACCACCG
738 ACCGGATCGAGGGTTGCAGCAGCAGGATC-G--GCA-A---CACGTAGAG-GGGGAC--CCA--G
* * *
3057296 ACCGATCCCCGGCTATG-G-ATCGCACCCCTCTGGTCGCGCCCATTGGAGCGTCCCGTAAGTTCT
791 ACCGATCCCCGGCT-TGTGCATC-CACCCCTCTGGT-G-G----TT-GAGCG-ACCGCACG--CT
* *
3057359 CGTTTCACTGGGTTGACTACTCCAGGCATAAGATGAAGAGCCCTTCATTCCCATGCTCTACCG
844 CGTTTCA-TGGGTTGACT--T--AGGCAT---ACG--GAG---TTCATTCCCA-G-TCTA--A
* * * * *
3057422 GCATA-GAGAGTTCATTCTCGGTCTAA-ACCTTCCAGA-CTGCACCG-AGTGTCTGTGGCCAAGC
1 GCATACG-GAGTTCATTCCCAGTCTAAGA---T-CGGACCAG-ACCGAAG-GT-TGCGG-C-AGC
* * * *
3057483 AAATTGCTAAGGCT-AGGCATGTGCTGGCCTGCCGCA-TTTTCTTCA-CTGGGGCACCATCGTCG
56 ACA-TGCT-GGGCTCGGGCATGTGCTGG--TGCCGCATTTTTCTTCATC-GGGGCACCATCGCCG
* * * *
3057545 GAGAACATG-CGGGCATACGGCATTGGGGTTTCGACGA-TCGGGGGGCTGGGGGTGTGCGCACAT
116 GAGAACCTGAC---C-GACGGCATTGGGGTTCCGACGATTCGGGGGGCGGGGGGTGTGCGCACAT
* **
3057608 GATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTTTCAAACCTCGAGA
177 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
3057673 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAATAGCCATTAAAGTGTC
242 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTT
* *
3057737 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTTGCTGAATT
307 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTG-ATT
* * * *
3057802 TTTTTTTGCATGCCAATAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACGCCTTCT
371 TTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * ** * * *
3057867 GAAAAAATTTTAAAAAATCCCAAATCAAAAAAAGTTTTACAAATCGTGAAAAATAGAAAATGAGT
436 GAAAAAATTTTAAAAAATCTCGAACCGCAAAAA-TTTTAAAAATCATGAAAAATAGAAAACGAGT
* * *
3057932 CGTCTTGCTATGAAACTTCACATGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAA
500 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
3057997 ATGGCATTGGCATGTATAAATATGAAGATGTACC-AAATCCCA-CCTACCACCCTATCGATCCAC
565 ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAA-CCCACCCTACCACCCTATCGATCCAC
* * **
3058060 GGCTTGCGCATCCCGTCTCTTTGGCCGGTGTAGTGCCCGCCCGCCCGTCC-GCCCGTTTGCCCGC
629 GACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CCG-CCGCCCG-CCTGCCCG-TT------
* * * * * *
3058124 CCGTTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGCCTAAGATTGGACCGGAAC
684 -C--TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATC
* * * * * * ** * **
3058189 GATGGTTCCGGCAGCAAGATCGGCAGCACGTAGAGGGGGACCC-GATCGATCTTCAGCTTACGCA
746 GAGGGTTGCAGCAGCAGGATCGGCAACACGTAGAGGGGGACCCAGACCGATCCCCGGCTTGTGCA
* * * *
3058253 TCCCACCCCTCTGGCCGATTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAG
811 T-CCACCCCTCTGG-TGGTTGAGCGACCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
3058318 TTCATTCCCAGTCTAA
874 TTCATTCCCAGTCTAA
* * * * *
3058334 GCGTACGGAGTTCGTTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGGCAGCACATGCTGGG
**
3058399 CTCGAACATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAG
3058452 CATCACCGGA
Statistics
Matches: 3135, Mismatches: 391, Indels: 467
0.79 0.10 0.12
Matches are distributed among these distances:
878 171 0.05
879 91 0.03
880 40 0.01
881 194 0.06
882 25 0.01
883 4 0.00
884 28 0.01
885 2 0.00
886 2 0.00
887 1 0.00
888 1 0.00
890 11 0.00
891 91 0.03
892 6 0.00
893 213 0.07
894 515 0.16
895 156 0.05
896 144 0.05
897 50 0.02
898 41 0.01
899 27 0.01
900 45 0.01
901 29 0.01
902 41 0.01
903 36 0.01
904 78 0.02
905 90 0.03
906 92 0.03
907 30 0.01
908 7 0.00
909 13 0.00
910 19 0.01
911 13 0.00
912 22 0.01
913 2 0.00
914 4 0.00
915 3 0.00
916 17 0.01
917 3 0.00
918 2 0.00
919 3 0.00
920 5 0.00
921 12 0.00
923 1 0.00
924 6 0.00
925 6 0.00
926 1 0.00
928 11 0.00
929 8 0.00
931 9 0.00
932 5 0.00
933 2 0.00
934 11 0.00
935 3 0.00
936 1 0.00
937 13 0.00
938 17 0.01
939 3 0.00
940 2 0.00
942 19 0.01
943 13 0.00
944 27 0.01
945 25 0.01
946 27 0.01
947 11 0.00
948 19 0.01
949 32 0.01
950 29 0.01
951 63 0.02
952 8 0.00
953 25 0.01
954 10 0.00
955 70 0.02
956 96 0.03
957 91 0.03
958 20 0.01
959 12 0.00
960 2 0.00
962 1 0.00
963 2 0.00
964 4 0.00
965 5 0.00
966 25 0.01
967 16 0.01
968 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGAACCTGACCGAC
GGCATTGGGGTTCCGACGATTCGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGATTTTTTTTTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCT
CGAACCGCAAAAATTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
ATGAAGATGTGCCTAAACCCACCCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCT
GGCCGACGTAGTGCCGCCGCCCGCCTGCCCGTTCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCAGCAGCAGGATCGGCAACACGTAGAG
GGGGACCCAGACCGATCCCCGGCTTGTGCATCCACCCCTCTGGTGGTTGAGCGACCGCACGCTCG
TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:3058341 original size:26 final size:26
Alignment explanation
Indices: 3058311--3058360 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
3058301 GACTTAGGCA
3058311 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
*
3058337 TACGGAGTTCGTTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
3058361 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:3060894 original size:26 final size:26
Alignment explanation
Indices: 3060858--3060910 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3060848 GTTGACTTAG
3060858 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3060884 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3060910 G
1 G
3060911 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3065297 original size:26 final size:26
Alignment explanation
Indices: 3065261--3065313 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3065251 GTTGACTTAG
3065261 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
3065287 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
3065313 G
1 G
3065314 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:3065522 original size:895 final size:888
Alignment explanation
Indices: 3060523--3070218 Score: 10703
Period size: 895 Copynumber: 11.1 Consensus size: 888
3060513 GGCATGTGCG
*
3060523 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTG
1 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
3060588 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCATGGCTT---TAT
66 GCACGCAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
3060649 ---G--T-TCTGTGCC--CGTAGTGC-CTCTCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATAC
131 CCCGCCTCTCTG-GCCGACGTAGTGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * *** * *
3060705 GGAGTTCATTCACAGTCTAAGATCAGA-CAGGA-CTGAGGGTTGTGGCAGCAGGATTGGTAGCAC
195 GGAGTTCATTCCCAGTCTAAGATCGGACCA-GATC-GAGGGTTACAGCAGCAGGATCGGCAGCAC
* * * *
3060768 GTAGAGGGGGACACGGCCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGC
258 GCAGAGGGGGAC-CGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * *
3060833 ACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTTA
321 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-AGCATATGGAGTTCA
*
3060898 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACAT-CTTGGGCTCGGGCATGTGC
385 TTCCCAGTCTAAGATCGGACC-GACCGAGGGTTGCGGCAGCACATGC-TGGGCTCGGGCATGTGC
* * *
3060962 TGGTGCCGCATTTTTCTTCACCGAGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACCGACGG
448 TGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGCCGGAGAACCTGACCGGCGG
* *
3061027 CATTGGGGTTCCGACGATCGAGGGGCC-GGGGGTGTGCG-ACATTGATGTGCGATGGGTGCTGAT
513 CATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACA-TGATGTGCGATGGGTGCTGGT
3061090 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAAAGA
577 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AAAGA
* *
3061155 GCATTTGAGATTTTACAAGTTTGCTGCCAGTAAG-CATTAAAGTGTCTGAAAT-AGGACAC-TTT
641 GCATTTGAGATTTTACAGGTTTGCTGCCAGT-AGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
3061217 TTCAAATGGTCACAAAATGTTGTACACTTCGAG----TA----AATTGTTTTATGCATGCAAAAA
705 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGC-CAAC
* * * *
3061274 AAAAATACTAGGATCACGTCTACCAAGTTTGGGCCCAAAACAT-TTTCTGAAAAAATTTAAAAAA
768 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTC-GAAAAAATTTTAAAAA
* * * *
3061338 ATCCCAAACCGTAAAAAGTTTCGAAGATCGTG-AAAATAG-AAACGAGTCGTCTTGCC
831 ATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
3061394 ATGGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATTAAAAT-GCATT
1 AT-GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
3061457 GGCAC-TAGAAATATGAAGATGTACCGAAA-CCAACCTACCA--C-ATCGATCGACGGCTTGCGC
65 GGCACGCAGAAATATGAAGATGTGCCTAAACCCAA-CTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * * **
3061517 GTCCCGTCTCTCTAGTCGGCGTAGTGCCCGCCTGCCCGCCCACCCGCTACATTTCGTCATTTGGG
129 ATCCCGCCTCTCTGGCCGACGTAGT----G-CT---CGCCCGCCCGCT-CGTTTCGTCGGTT-GG
* * * * * * * *
3061582 CTTAGTCATACAAGAGGTCATTCCCAGTCTAAGGACCGGACCAGACTAGAGGG-TGCA-TAGTAG
184 CTTAGGCATAC-GGAGTTCATTCCCAGTCTAA-GATCGGACCAGA-TCGAGGGTTACAGCAGCAG
* ** * *
3061645 GATCGACAGCACAAAGAGGGGGATCCGACCGATCCCCGCTTGCGCATCCCCCGCCCTCTGGCCAG
246 GATCGGCAGCACGCAGAGGGGGA-CCGACCGATCCCGGCTTGCGCATCCCGC-CCCTCTGGCC-G
* *
3061710 GCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGT-T---
308 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGC
* * *
3061771 -TA---AG---A-T--C-G-----GA-C-CA-GGACCGAGGGTTGC-GCAGCACAAGC-GACCGG
373 ATATGGAGTTCATTCCCAGTCTAAGATCGGACCGACCGAGGGTTGCGGCAGCACATGCTG---GG
* * **
3061815 CTCGAGCATGTGCTGGTGCCG--TATTTCTTTGCC-GGG---CA----C----CATC-CCGGAGA
435 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGCCGGAGA
* ** * * *
3061865 ACCTGACCGGCAGCATTGGGGTT-CGGTGATCGAGGGG-CGGGGGGTGT-CACATATGATGTGCG
500 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * * *
3061927 ATGGGTGTTGGTACTTGGCTCTTATA-TGG-CCCCTATCCCTCATCAAATCTTGAGAACTCACAC
565 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
3061990 CCCCTTAAAGAGCATTTTAGATTTTACA-GTTTGC-GCCAGTAGCCATTAAAGTGTCT-AAATGG
630 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
3062052 GGACA-TTTTTTCAAATGGTCACAAAGTCTTGTACAACTT-GAG-TTTTAGCTGATTTTTTTGTG
695 GGACACTTTTTTCAAATGGTCACAAAATCTTGTAC-ACTTCGAGTTTTTAGCTGAATTTTTTGTG
* * * *
3062114 CATGCCAACAAAAATACAAGGATCACGTTCTACCAA-TTAGCGGCAAAAACTCCTTCCAAAAAAA
759 CATGCCAACAAAAATACAAGGATCACG-TCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAA
* * *
3062178 TTTTAAAAAATCCCGAACC-CAAAAAGTTTC-AATATCGTG-AAAATAGAAAACGAGTCGTCTTG
822 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
3062240 CC
887 CC
*
3062242 ATGAAACTTCACGT-AA-GCTT-A-GGACCATTGTA-GAATTCACAAGCCATAAAAATGGCATTG
1 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
3062302 GCACACAGAAATATGAAGATGTGCCTAAACCC-ACTTACCACCCTATCGATCCACGGCTTGCACA
66 GCACGCAGAAATATGAAGATGTGCCTAAACCCAAC-TACCACCCTATCGATCCACGGCTTGCGCA
* *
3062366 TCCCGTCC-CTCTGGCCGGCGTAGTCCCAGC-CGCCTGCCCGCTCG-TTCGTCGGTTGGC-TAGG
130 TCCCG-CCTCTCTGGCCGACGTAGT----GCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* ** *
3062427 CATACGGAGTTCATTCCCAGTCTAAGATAGGGA-TGGA-CTGAGGGTTA-TGCAGCAGGATCGGC
190 CATACGGAGTTCATTCCCAGTCTAAGAT-CGGACCAGATC-GAGGGTTACAGCAGCAGGATCGGC
* * ** ** * *
3062489 AACACGCAAAGGGGGACCCGACTAATCCCCAACTTGCGCATCTCGCCCCTCTGGCTGGCTGAGCG
253 AGCACGCAGAGGGGGA-CCGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * *
3062554 CCCGCACGCTCGCTTCGTGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATATGAA
316 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-AGCATATGGA
* * * *
3062619 GTTCATTCCCAGTCTATGATCAGACTGGA-CGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCAT
380 GTTCATTCCCAGTCTAAGATCGGAC-CGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * * * * *
3062683 GTGCTGGTGCCACATTTTTCATCGCCGGGGCACCATCGTCGGAGCATTGCCAGAGAACCTGACCA
444 GTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGCCGGAGAACCTGACCG
* *
3062748 GCGGCATTGGGGTTCTGACGATCGTGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGCTGGGTG
509 GCGGCATTGGGGTTCCGACGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTG
**
3062813 CTGGTACTTATCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
572 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
3062878 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACT
637 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
3062943 TTATTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTTCATGCCA
702 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCA
* * * * **
3063008 ACAAAAATACAAGGATCATGGCTACCAAGTTCGAGGCCAAAACTCCTTTCGAAAGGATTTTAAAA
766 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAA
* *
3063073 AATCTTGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA-GAAGTCGTCTTGCC
830 AATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG-AGTCGTCTTGCC
** * *
3063132 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCTATTTACAAGCCATAAAAACGGCATTC
1 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * *
3063197 GCATGCAAAAATATGAAGATTTACCTAAAGCCAACTACCACCCTATCGATCCACGGCTTGCGCAT
66 GCACGCAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
3063262 CCCGCCTCTCTGGCCGACGTATTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGATGGCTTAAGCA
131 CCCGCCTCTCTGGCCGACGTAGTGCTCGCCCG--C--CCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * ** * * *
3063327 TATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGCTTATGGCAGCAGCATTGGTAGCA
192 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTACAGCAGCAGGATCGGCAGCA
* ** * *
3063392 CGCAGAGGGGGACCTTG-CCAATCCCTATCTTACGCATCCCGCCCCTCTGGCCGGTTGAGCGCCC
257 CGCAGAGGGGGACC--GACCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* *
3063456 GCACGCTCGTTTCGTGGGTTGAATTAGGCATACAGAGTTCATTCCCAGTCTAAG-ATATGGAGTT
319 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-AGCATATGGAGTT
* * * * ***
3063520 CGTTCCCAGTCTAAGATCGGACCAAACCGATGATTATAGCAGCACATGCTGGGCTCGGGCATGTG
383 CATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * * * * * *
3063585 CTAGTGCCTCATTTTCCTTCACCGGGGCACCATCATCGGAGTATCGCCGGAGAACTTGACCGACG
447 CTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGCCGGAGAACCTGACCGGCG
* * * *
3063650 GCATT---G----G-CGATCAGGGGGGCCGGGGGGGTGGGTGGACATGATGTGCGATGGATGCTG
512 GCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
3063707 GTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG
575 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
3063772 GGCATTTGAGATTTTACGGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
640 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* ** *
3063837 TTCAAAAGGTCACAAAAAATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATA
705 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACA
* * *
3063902 AAAATACAAGGATCCCATCTACCAAGTTTGGGGCCAGAACTCCTTTCGAAAAAATTTTAAAAAAT
769 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAAT
* ** ** * *
3063967 CTTGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGGC
833 CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* *
3064023 ATGAAACTGCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
1 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
3064088 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCACAT
66 GCACGCAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
3064153 CCCGCCTCTCTGGCCGATGTA--G-T-GCCCGCTCGCCCATTTCATCGGTTGGCTTAGGCATACG
131 CCCGCCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * ** * * *
3064214 GAGTTCATTCCAAGTCTAACATTGGACTGGATC-ACGAGTTACAGTAGCAGGATCGGCAGCATGC
196 GAGTTCATTCCCAGTCTAAGATCGGACCAGATCGA-GGGTTACAGCAGCAGGATCGGCAGCACGC
* ** * * ** *
3064278 AGAGAGGGATCCGACCGATCCCCGGCTTATGCATCCCACCCCTCTGGCTGATTGAGGGCCCGCAC
260 AGAGGGGGA-CCGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * *
3064343 GCTCGTTTCATGGGTTGACTTAGGCACACGGAGTTCATTCCCAGTCTACGCATACGAAGTTCATT
323 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA-GCATATGGAGTTCATT
* ** * * * ** * *
3064408 CCGAGTCTAAGATCAAATCGGACTGAGGGTTGTGGCAGC-CTATGCTGGG-TATGGTAGGTGCTG
387 CCCAGTCTAAGATCGGA-CCGACCGAGGGTTGCGGCAGCAC-ATGCTGGGCTCGGGCATGTGCTG
* * * * **
3064471 GAGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTTGGAGAACCTGACCGGCGGCA
450 GTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGCCGGAGAACCTGACCGGCGGCA
3064536 TTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
515 TTGGGGTTCCGACGATC-GGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
3064601 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACGCCCTTAAAGAG
577 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
3064666 CAATTGAGATTTTACAGGTTTG-TAGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
642 CATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
3064730 TCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTGTGTGCATGCCAACAA
706 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT-TGTGCATGCCAACAA
* * * *
3064795 AAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTGCTTCCAAAAAATTTTAAAAAATCT
770 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCT
* * ** * * *
3064860 CGAACTGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTAGCC
835 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
3064914 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
1 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
3064979 GCATGCATAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCGCAT
66 GCACGCAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
3065044 CCCGCCTCTCTGGCCGACGTAGTGCTCGCCCGCTCGCTCGCTTCGTCGGATGGCTTAGGCATACG
131 CCCGCCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * * * *
3065109 GAGTTCATTCCAAGTCTAAGATCAGACCAGATCGAGGGTTCCGGCAGCAGGATCAGCAACACACA
196 GAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTACAGCAGCAGGATCGGCAGCACGCA
* * * * * *
3065174 GAGGGGGACTCGATCGATCCTCGGCTTG-GTCATCCCGCTCCTCTGGCTGCCTAAGTGCCCGCAC
261 GAGGGGGAC-CGACCGATCC-CGGCTTGCG-CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
3065238 GCTCGTTTCGTGAGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT
323 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-AGCATATGGAGTTCATT
* *
3065303 CCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTAGGCTCGGGCATGTGCTGG
387 CCCAGTCTAAGATCGGACC-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * *
3065368 TGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGTAT
451 TGCCGCATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGCCGGAGAACCTGACCGGCGGCAT
* *
3065433 TGGGGTTCCGACGATCAGGGGGGCCGGAGGGGTGGGCGCACATGATGTGCGATGGATGCTGGTAC
516 TGGGGTTCCGACGATC-GGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
3065498 TTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
579 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
3065563 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATGGGGACACTTTTTTCA
644 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
3065627 AATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGACTTTTTTTGTGCATGCCAACAAAAA
709 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTGTGCATGCCAACAAAAA
* * * *
3065692 TACAAGGATCACGTCTACCAAGTCTGGAGACAAAACTCCTTCTGAAACAATTTTAAAAAATCTCG
773 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAATTTTAAAAAATCTCG
*
3065757 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
837 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
3065809 ATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATCAATTCACAAGCCATAAAAATGGCATTG
1 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
3065874 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCAT
66 GCACGCAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * **
3065939 TCTGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCTCGTTTTATCGGTTGGCTTAGGCATACG
131 CCCGCCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * ** * * *
3066004 GAGGTCATTCCCAGTTTAAGATTGGATCAGATCGAGGGTTGTAGCAGTAGAATCGGTAGCACGCA
196 GAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTACAGCAGCAGGATCGGCAGCACGCA
* * * * *
3066069 GAGGGGGACCAGGCCGATCCCTGACTTGCGCATCCCGCCCCTCTAGCCGGCTGAGTGCCCGCATG
261 GAGGGGGACC-GACCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
*
3066134 CTCGTTTCGTGGTTTGACTTAGGCATACGGAGTTCATTCCCAG--T--CA-A---AG---A-T--
324 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGCATATGGAGTTCATTCC
* * * ** * *
3066185 C-G----A-A-CTG---GACCGAGGTTTACGATAGCACATGCTGGGCTCGAGCATATGCTGGTGC
389 CAGTCTAAGATCGGACCGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
** * * *
3066240 CGCATTTTTCTTCGTCGGTGCACCATCGTCGAAGCATCACCGGATAACCTGACCGGCGGCATTGG
454 CGCATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGCCGGAGAACCTGACCGGCGGCATTGG
* * * *
3066305 GGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCACACACGATGTGCGATGGGTGCTGCTACTTGG
519 GGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
3066370 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
583 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * *
3066435 AGATTTTACAGCTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
648 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
3066500 GTCAAAAAATCTTGTAAACCTT-GAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATAC
713 GTCACAAAATCTTGTACA-CTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAAAAATAC
* * * *
3066564 AAGGATCACATCTACAAAGTTTGGGGCCAAAACTCGTTGTGAAAAAATTTTAAAAAATCTCGAAC
776 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCTCGAAC
* *
3066629 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCC
840 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
** *
3066678 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAACAAAAATGGCATTG
1 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
3066743 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCAT
66 GCACGCAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCGCAT
* *
3066808 -CCGTCTCTCTAGCCGACGTAGTG-TCGCCCGCCCGCCCCTCGTTTCGTCGGTTGGCTTAGGCAT
131 CCCGCCTCTCTGGCCGACGTAGTGCTCGCCCGCCCG---CTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * *
3066871 ATGGAGTTCATTCCCAGTCTAAGATCGGATCGGA-CTGAGGGTTGCAGCAGTAGGATCGGTAGCA
193 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATC-GAGGGTTACAGCAGCAGGATCGGCAGCA
* * * * *
3066935 CGCAGA-GGGTACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGGCGGCTAAGCGCCCG
257 CGCAGAGGGGGA-CCGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* *
3066999 CACGCTCGTTTCATGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT---A-A--GA--TCA
320 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGCATATGGAGTTCA
* * * *
3067056 ----GA-TC--AGACCGGACC-A---AGGCTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTG
385 TTCCCAGTCTAAGATCGGACCGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* ** * * **
3067110 GTGTCGCATTTTTCTTCGTCGGGGCAGCATCGTCGAAGCATCGTCGGAGAACCTGGTCGGCGGCA
450 GTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGCCGGAGAACCTGACCGGCGGCA
* * * * * *
3067175 TTAGGGTTTCGATGATCGAGGGGGTCGGGGAGGTGTGCGCACATGATGTGC-A---AT--AGGTA
515 TTGGGGTTCCGACGATCG-GGGGGCCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
3067234 ------CC----A---G-----TA-CCTCTCATCAAACCTAGAGAACTCACACCGCCTTAAAAAG
578 CTTGGCCCTTATATTGGCCCCCTATCC-CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
3067280 CATTTGAGATTTTACAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
642 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
3067345 CAAATGGTCAAAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAA
707 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAAA
* *
3067410 AATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCGTTGCGAAAAAATTTTAAAAAATCT
771 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCT
* *
3067475 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCC
835 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
** *
3067529 ATGAAACTTCACGTGAAGGCTTAAGGGACCAGGGTATGGATTTACAAGCCATAAAAATGGCATTG
1 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * **
3067594 GCACACAAAAATATGAAGATGTGCCTAAACCC-ACTTACCACCCTATCGATCCATAGCTTGCGCA
66 GCACGCAGAAATATGAAGATGTGCCTAAACCCAAC-TACCACCCTATCGATCCACGGCTTGCGCA
* * * * *
3067658 TCCC-CTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCTATCTGCCCGTTCATTTCGACGGTTGGCT
130 TCCCGC-CTCTCTGGCCGACGTAGTGCTCGCCCGCC---C-G--C--TCGTTTCGTCGGTTGGCT
* * * * *
3067722 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGTCCAGACCGAGGGTTTC-GCAACAGGATCG
186 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTACAGCAGCAGGATCG
* * * * * * *
3067786 GTAGCACACAGAGGGGCACCCAGTCGATCCCTGGCTTGCGCATCCCGCCCTTCTGGCCGACTGAG
251 GCAGCACGCAGAGGGGGACCGA-CCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
3067851 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---ATA---
314 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGCATATGG
*
3067908 AG---A-T--C-G-----GAT-TG---GACC-AGGGTTGCGGCAGCACATGACTGGGCTCGGGCA
379 AGTTCATTCCCAGTCTAAGATCGGACCGACCGAGGGTTGCGGCAGCACATG-CTGGGCTCGGGCA
* ** ** * *
3067956 TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCGTCAGAGAACCTGA-C
443 TGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGCCGGAGAACCTGACC
* *
3068020 GGCAGCATTGGGGTTCCG--G-T-----GG-CGGGGGGTGTGCGCACATGATTTGCGAT-GGTGC
508 GGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
3068075 TGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
573 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
3068140 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGGCACACTT
638 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
3068205 TTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTTTTTAGCTGAATTGTTTTGTGCATGCCAA
703 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAA
3068270 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAA
767 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAA
3068335 ATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
831 ATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * * *
3068393 ATGAAACTTCACGTGAAGGCTTAGGGGACCGTTGCATTAATTTACAAGCCATAAAAATGGCATTG
1 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * ** *
3068458 GCATGTAGAAATATGAAGATGTGATTAAA-CCAAC-ACCACCC-ATCGATCCACGGCTTGCACAT
66 GCACGCAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * * *
3068520 CTCGTCTCTCTGGGCGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCTTCGGTTGGCATAGGCA
131 CCCGCCTCTCTGGCCGACGTAGT----GCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * **
3068585 TACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATAGAGGGTTACAGCTGTAGGATCAACAGCA
192 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTACAGCAGCAGGATCGGCAGCA
* ** * * * *
3068650 CGCAGAGGGGGACCCAGTTGATGCCCGACTTGCGAATCCCACCCCTCTGGCCGGCTGAGCACCCG
257 CGCAGAGGGGGACCGA-CCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* *
3068715 CACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAG--T--C-TA---AG---A
320 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGCATATGGAGTTCA
* * * *
3068769 -T--C-G-----GATC--A--GATCGAGGGTTACAGCAGCACATGCTGGACTCGGGCATGTGCTG
385 TTCCCAGTCTAAGATCGGACCGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * *
3068821 GTGCCGTATTTTTCTTCACCGGGG---CA----C----CATCGCCGGAGAACCTGACCAGCGACA
450 GTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGCCGGAGAACCTGACCGGCGGCA
* * * * *
3068875 TCGGGGAT-CTAGCGATCGGGGGGCCGGGGGGTGTGCGAACATGATGTGCGATGGGTGCTGGCAC
515 TTGGGGTTCCGA-CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * * * *
3068939 TTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTAACCCCCCCTTAATGAGCA
579 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
3069004 TTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCA
644 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
3069069 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAA
709 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAAAAA
* * * * *
3069134 TACAAGGATCATGTCTACCAAGTTTGGAGCCAAAAATCCTTCCAAAAAAATTTAAAAAAATC-CT
773 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCTC-
* *
3069198 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCC
836 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * * *
3069251 ATGAGACTTCACATGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTG
1 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * *
3069316 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGATGGCTTACGCAT
66 GCACGCAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
3069381 CTCGTCTCTCTGGGCGACATAGTGCCTGCCCGCCCGCCCGCCCGCCCGTTCATTTCGTCGGTTGG
131 CCCGCCTCTCTGGCCGACGTAGTG-CT-------CGCCCGCCCG--C--TCGTTTCGTCGGTTGG
* * * * * *
3069446 CTTAGGCATACGAACTTCATTCCCAGTCTAAGATCAGACCAGA-CTGAGGGTTACGGCTGTAGGA
184 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATC-GAGGGTTACAGCAGCAGGA
* * *
3069510 TCGGCAGCACGTAGA-GGGGACCGACCGATCCCCGGCTTGCGAATCCCACCCCTCTGGCCGGCTG
248 TCGGCAGCACGCAGAGGGGGACCGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
*
3069574 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--C-TA-
312 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGCATAT
* * *
3069633 --AG---ATT----G-----GAT-TG---GACCGAGGGTTGCGGCAGCAAATGCTGGACTCGGGC
377 GGAGTTCATTCCCAGTCTAAGATCGGACCGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * *
3069680 ATGTGCTGGTGCCGTATTTTTTTTCACCGGGGCACCA---T-----CAT---CGGATAACCTGAC
442 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGCCGGAGAACCTGAC
* * * *
3069734 CGACGGTATTGGGGTTCCGGCGATCGGGGGGGCTGGGGTGGGTGTGCGCACATGATGTGCGATGG
507 CGGCGGCATTGGGGTTCCGACGATC-GGGGGGC-CGGG-GGGTGTGCGCACATGATGTGCGATGG
* * * *
3069799 GTGCTAGCACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCT
569 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
3069864 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGAC
634 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * *
3069929 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA-TTTTTCAGCGGTATTTTTTTATGCAT
699 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-AGCTG-AATTTTTTGTGCAT
* * *
3069993 GCCAACAAAAATACAAGGATCATGTGTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTA
762 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAATTTT
** * *
3070058 AAAAAATC-CTGAAAGGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCC
826 AAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
3070121 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
1 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
3070186 GCACGTAGAAATATGAAGATGTGCCTAAACCCA
66 GCACGCAGAAATATGAAGATGTGCCTAAACCCA
3070219 CTGTCATAAC
Statistics
Matches: 7659, Mismatches: 844, Indels: 645
0.84 0.09 0.07
Matches are distributed among these distances:
836 62 0.01
837 44 0.01
838 36 0.00
839 8 0.00
840 3 0.00
841 27 0.00
842 9 0.00
843 37 0.00
844 77 0.01
845 43 0.01
846 29 0.00
847 86 0.01
848 84 0.01
849 91 0.01
850 51 0.01
851 427 0.06
852 59 0.01
853 79 0.01
855 3 0.00
856 12 0.00
857 121 0.02
858 696 0.09
859 50 0.01
860 19 0.00
861 97 0.01
862 12 0.00
863 8 0.00
864 368 0.05
865 41 0.01
866 22 0.00
867 214 0.03
868 182 0.02
869 637 0.08
870 516 0.07
871 39 0.01
872 23 0.00
873 8 0.00
874 143 0.02
875 31 0.00
876 7 0.00
877 9 0.00
878 10 0.00
879 35 0.00
880 4 0.00
881 62 0.01
882 11 0.00
883 254 0.03
884 68 0.01
885 31 0.00
886 28 0.00
887 84 0.01
888 39 0.01
889 68 0.01
890 108 0.01
891 702 0.09
892 258 0.03
893 3 0.00
894 136 0.02
895 848 0.11
896 108 0.01
897 15 0.00
898 74 0.01
899 202 0.03
900 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (888 bp):
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGCAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGCCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTACAGCAGCAGGATCGGCAGCACGCA
GAGGGGGACCGACCGATCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGCATATGGAGTTCATTCCCA
GTCTAAGATCGGACCGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
CATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGG
TTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGA
TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAA
AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
Found at i:3072596 original size:57 final size:57
Alignment explanation
Indices: 3072534--3072812 Score: 373
Period size: 57 Copynumber: 4.7 Consensus size: 57
3072524 TCTTGTGTAG
*
3072534 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTTAA
*
3072591 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTTAA
*
3072648 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAATCCCTTTTTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAA------TATTTTTTTG-AAATTTATTTTTAA
** *
3072712 GGAAAA-TGAATACTTTCAACTTTTCCCTAAAAATATTTTTCAGAAATTTTGATTTTCAA
1 GGAAAATTG-ATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAA-TTT-ATTTTTAA
* *
3072771 GGAAGATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT
3072813 TGGAACTTTT
Statistics
Matches: 197, Mismatches: 12, Indels: 24
0.85 0.05 0.10
Matches are distributed among these distances:
56 3 0.02
57 87 0.44
58 10 0.05
59 42 0.21
60 2 0.01
63 10 0.05
64 40 0.20
65 3 0.02
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.46
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTTAA
Found at i:3072784 original size:59 final size:58
Alignment explanation
Indices: 3072696--3072810 Score: 169
Period size: 59 Copynumber: 2.0 Consensus size: 58
3072686 TTTTTTTTTT
* *
3072696 GAAAATTTATTTTTAAGGAAAATGAATACTTTCAACTTTTCCCTAAAAATATTTTTCA
1 GAAAATTTATTTTCAAGGAAAATGAATACTTTCAACTTTTCCCCAAAAATATTTTTCA
* *
3072754 GAAATTTTGATTTTCAAGGAAGATTG-ATACTTTCAACTTTTCCCCAAAAATATTTTT
1 GAAAATTT-ATTTTCAAGGAA-AATGAATACTTTCAACTTTTCCCCAAAAATATTTTT
3072811 TTTGGAACTT
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
58 7 0.14
59 41 0.80
60 3 0.06
ACGTcount: A:0.37, C:0.13, G:0.09, T:0.42
Consensus pattern (58 bp):
GAAAATTTATTTTCAAGGAAAATGAATACTTTCAACTTTTCCCCAAAAATATTTTTCA
Found at i:3072810 original size:121 final size:118
Alignment explanation
Indices: 3072534--3072813 Score: 399
Period size: 121 Copynumber: 2.4 Consensus size: 118
3072524 TCTTGTGTAG
* *
3072534 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA----TTTTTTTGAAATTTATTTTTTAGGAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTTTGAAATTTATTTTTAAGGAA
** *
3072595 AATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
66 AATTGATACTTTCAACTTTTCCCTAAAAATATTTTTCAGAAATTTATTTTCAA
* *
3072648 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTTTTTTGAAAATTTATTTTTAAG
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAT--ATTTTTTTTTTTG-AAATTTATTTTTAAG
3072713 GAAAA-TGAATACTTTCAACTTTTCCCTAAAAATATTTTTCAGAAATTTTGATTTTCAA
63 GAAAATTG-ATACTTTCAACTTTTCCCTAAAAATATTTTTCAGAAA-TTT-ATTTTCAA
*
3072771 GGAAGATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
3072814 GGAACTTTTG
Statistics
Matches: 146, Mismatches: 10, Indels: 13
0.86 0.06 0.08
Matches are distributed among these distances:
114 32 0.22
120 10 0.07
121 62 0.42
122 3 0.02
123 39 0.27
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.46
Consensus pattern (118 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTTTGAAATTTATTTTTAAGGAA
AATTGATACTTTCAACTTTTCCCTAAAAATATTTTTCAGAAATTTATTTTCAA
Found at i:3072856 original size:5 final size:5
Alignment explanation
Indices: 3072848--3072987 Score: 51
Period size: 5 Copynumber: 27.4 Consensus size: 5
3072838 AAAATAGAAT
3072848 AATAA AAT-A AATAA AAGTGAA AAT-A AATAAA AATAAA AATAA AGA-AA
1 AATAA AATAA AATAA AA-T-AA AATAA AAT-AA AAT-AA AATAA A-ATAA
* * * * *
3072895 AGTAA AACAAA AATAAA AATAA GATAA AGATAA AA-AA TATTA AATAA
1 AATAA AA-TAA AAT-AA AATAA AATAA A-ATAA AATAA AATAA AATAA
*** **
3072942 AACCT AATCT AATAA ATATAA AA-ACA AATAA AATAA AA-AA AA-AA AA
1 AATAA AATAA AATAA A-ATAA AATA-A AATAA AATAA AATAA AATAA AA
3072988 AACCTGAAGC
Statistics
Matches: 105, Mismatches: 16, Indels: 29
0.70 0.11 0.19
Matches are distributed among these distances:
4 20 0.19
5 48 0.46
6 33 0.31
7 4 0.04
ACGTcount: A:0.74, C:0.04, G:0.04, T:0.18
Consensus pattern (5 bp):
AATAA
Found at i:3072872 original size:16 final size:16
Alignment explanation
Indices: 3072851--3072912 Score: 79
Period size: 16 Copynumber: 3.8 Consensus size: 16
3072841 ATAGAATAAT
*
3072851 AAAATAAATAAAAGTG
1 AAAATAAATAAAAGTA
*
3072867 AAAATAAATAAAAATA
1 AAAATAAATAAAAGTA
*
3072883 AAAATAAAGAAAAGTA
1 AAAATAAATAAAAGTA
*
3072899 AAACAAAAATAAAA
1 AAA-ATAAATAAAA
3072913 ATAAGATAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
16 31 0.79
17 8 0.21
ACGTcount: A:0.77, C:0.02, G:0.06, T:0.15
Consensus pattern (16 bp):
AAAATAAATAAAAGTA
Found at i:3072896 original size:32 final size:32
Alignment explanation
Indices: 3072838--3072924 Score: 104
Period size: 32 Copynumber: 2.7 Consensus size: 32
3072828 TTATTTAAAG
* *
3072838 AAAATAGAATAATAAAATAAATAAAAGTGAAA-A
1 AAAATA-AA-AATAAAATAAAGAAAAGTAAAACA
*
3072871 TAAATAAAAATAAAAATAAAGAAAAGTAAAACA
1 AAAATAAAAAT-AAAATAAAGAAAAGTAAAACA
*
3072904 AAAATAAAAATAAGATAAAGA
1 AAAATAAAAATAAAATAAAGA
3072925 TAAAAAATAT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
31 3 0.06
32 28 0.60
33 16 0.34
ACGTcount: A:0.75, C:0.01, G:0.08, T:0.16
Consensus pattern (32 bp):
AAAATAAAAATAAAATAAAGAAAAGTAAAACA
Found at i:3072906 original size:27 final size:28
Alignment explanation
Indices: 3072876--3072929 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
3072866 GAAAATAAAT
3072876 AAAAATAAAAATAAAGA-AAAG-TAAAAC
1 AAAAATAAAAAT-AAGATAAAGATAAAAC
3072903 AAAAATAAAAATAAGATAAAGATAAAA
1 AAAAATAAAAATAAGATAAAGATAAAA
3072930 AATATTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 4 0.16
27 16 0.64
28 5 0.20
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.13
Consensus pattern (28 bp):
AAAAATAAAAATAAGATAAAGATAAAAC
Found at i:3072921 original size:11 final size:11
Alignment explanation
Indices: 3072838--3072989 Score: 63
Period size: 10 Copynumber: 13.9 Consensus size: 11
3072828 TTATTTAAAG
3072838 AAAATAGAATAAT
1 AAAATA-AA-AAT
3072851 AAAAT--AAAT
1 AAAATAAAAAT
*
3072860 AAAAGTGAAAAT
1 AAAA-TAAAAAT
3072872 -AAATAAAAAT
1 AAAATAAAAAT
*
3072882 AAAAATAAAGA-
1 -AAAATAAAAAT
*
3072893 AAAGTAAAACA-
1 AAAATAAAA-AT
3072904 AAAATAAAAAT
1 AAAATAAAAAT
* *
3072915 AAGATAAAGAT
1 AAAATAAAAAT
*
3072926 -AAA-AAATAT
1 AAAATAAAAAT
* *
3072935 TAAATAAAACCT
1 AAAATAAAA-AT
*
3072947 AATCTAATAAATAT
1 AA---AATAAAAAT
*
3072961 AAAA-ACAAAT
1 AAAATAAAAAT
3072971 AAAATAAAAA-
1 AAAATAAAAAT
3072981 AAAA-AAAAA
1 AAAATAAAAA
3072990 CCTGAAGCGG
Statistics
Matches: 108, Mismatches: 17, Indels: 32
0.69 0.11 0.20
Matches are distributed among these distances:
9 17 0.16
10 33 0.31
11 30 0.28
12 14 0.13
13 5 0.05
14 3 0.03
15 6 0.06
ACGTcount: A:0.74, C:0.03, G:0.05, T:0.18
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:3073828 original size:20 final size:20
Alignment explanation
Indices: 3073805--3073843 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
3073795 TAAAAATCAA
3073805 ATAAATAAAAAAAATAATAG
1 ATAAATAAAAAAAATAATAG
* * *
3073825 ATAATTAGAAAAGATAATA
1 ATAAATAAAAAAAATAATA
3073844 AAAAAATATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (20 bp):
ATAAATAAAAAAAATAATAG
Found at i:3073902 original size:22 final size:22
Alignment explanation
Indices: 3073862--3073916 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 22
3073852 TTATAGGATA
* *
3073862 AAAAAT-AAT-AATAATAATAT
1 AAAAATAAATAAATAAAAATAC
* *
3073882 ATAATTAAATAAATAAAAATAC
1 AAAAATAAATAAATAAAAATAC
3073904 AAAAATAAATAAA
1 AAAAATAAATAAA
3073917 ACAAAAAATA
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
20 4 0.15
21 3 0.11
22 20 0.74
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (22 bp):
AAAAATAAATAAATAAAAATAC
Found at i:3073909 original size:18 final size:17
Alignment explanation
Indices: 3073888--3073935 Score: 64
Period size: 16 Copynumber: 2.9 Consensus size: 17
3073878 ATATATAATT
3073888 AAATAAATAAAAATACAA
1 AAATAAATAAAAATA-AA
*
3073906 AAATAAAT-AAAACAAA
1 AAATAAATAAAAATAAA
3073922 AAAT-AATAAAAATA
1 AAATAAATAAAAATA
3073936 TATATTATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 3 0.11
16 11 0.41
17 5 0.19
18 8 0.30
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.17
Consensus pattern (17 bp):
AAATAAATAAAAATAAA
Found at i:3073922 original size:15 final size:15
Alignment explanation
Indices: 3073892--3073932 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
3073882 ATAATTAAAT
*
3073892 AAATAAA-AATACAA
1 AAATAAATAAAACAA
3073906 AAATAAATAAAACAA
1 AAATAAATAAAACAA
3073921 AAA-ATAATAAAA
1 AAATA-AATAAAA
3073933 ATATATATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 8 0.33
15 16 0.67
ACGTcount: A:0.80, C:0.05, G:0.00, T:0.15
Consensus pattern (15 bp):
AAATAAATAAAACAA
Found at i:3073949 original size:52 final size:55
Alignment explanation
Indices: 3073863--3073966 Score: 135
Period size: 52 Copynumber: 1.9 Consensus size: 55
3073853 TATAGGATAA
*
3073863 AAAATAATAATAATAATATATAATTAAATAAATAA-AAATACAAAAATAAATAAAAC
1 AAAATAATAATAAAAATATATAATT-AATAAATAATAAATA-AAAAATAAATAAAAC
* *
3073919 AAAA-AATAATAAAAATATAT-ATT-ATTAATAATAAATAAATAATAAATA
1 AAAATAATAATAAAAATATATAATTAATAAATAATAAATAAAAAATAAATA
3073967 CATAGGATAT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
52 17 0.39
53 5 0.11
54 3 0.07
55 15 0.34
56 4 0.09
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (55 bp):
AAAATAATAATAAAAATATATAATTAATAAATAATAAATAAAAAATAAATAAAAC
Found at i:3074009 original size:12 final size:12
Alignment explanation
Indices: 3073979--3074007 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
3073969 TAGGATATAT
3073979 ATAAAATATAAA
1 ATAAAATATAAA
3073991 ATAAAATA-AAA
1 ATAAAATATAAA
3074002 ATAAAA
1 ATAAAA
3074008 ATGACAAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 9 0.53
12 8 0.47
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (12 bp):
ATAAAATATAAA
Found at i:3074182 original size:7 final size:7
Alignment explanation
Indices: 3074172--3074213 Score: 57
Period size: 7 Copynumber: 5.7 Consensus size: 7
3074162 ATTTTCATTT
3074172 TTTTTTG
1 TTTTTTG
3074179 TTTTTTG
1 TTTTTTG
*
3074186 TTTTTGTT
1 TTTTT-TG
3074194 TTTTTTG
1 TTTTTTG
3074201 TTTTTTTG
1 -TTTTTTG
3074209 TTTTT
1 TTTTT
3074214 ACCAAAGCTC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
7 18 0.58
8 13 0.42
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (7 bp):
TTTTTTG
Found at i:3074182 original size:8 final size:8
Alignment explanation
Indices: 3074171--3074213 Score: 63
Period size: 8 Copynumber: 5.6 Consensus size: 8
3074161 CATTTTCATT
3074171 TTTTTTTG
1 TTTTTTTG
3074179 -TTTTTTG
1 TTTTTTTG
*
3074186 TTTTTGT-
1 TTTTTTTG
3074193 TTTTTTTG
1 TTTTTTTG
3074201 TTTTTTTG
1 TTTTTTTG
3074209 TTTTT
1 TTTTT
3074214 ACCAAAGCTC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
7 13 0.42
8 18 0.58
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (8 bp):
TTTTTTTG
Found at i:3074195 original size:23 final size:23
Alignment explanation
Indices: 3074170--3074213 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
3074160 ACATTTTCAT
3074170 TTTTTTTTG-TTTTTTGTTTTTG
1 TTTTTTTTGTTTTTTTGTTTTTG
3074192 TTTTTTTTGTTTTTTTGTTTTT
1 TTTTTTTTGTTTTTTTGTTTTT
3074214 ACCAAAGCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (23 bp):
TTTTTTTTGTTTTTTTGTTTTTG
Found at i:3074333 original size:10 final size:10
Alignment explanation
Indices: 3074286--3074333 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
3074276 TAGAGGTAAC
3074286 TTTTTTTCATT
1 TTTTTTTC-TT
**
3074297 TTTTTGGCTT
1 TTTTTTTCTT
3074307 TTTTTGTT-TT
1 TTTTT-TTCTT
3074317 TTTTTTTCTT
1 TTTTTTTCTT
3074327 TTTTTTT
1 TTTTTTT
3074334 AAATTGATCA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
9 2 0.06
10 23 0.74
11 6 0.19
ACGTcount: A:0.02, C:0.06, G:0.06, T:0.85
Consensus pattern (10 bp):
TTTTTTTCTT
Found at i:3074386 original size:126 final size:122
Alignment explanation
Indices: 3074163--3074559 Score: 509
Period size: 121 Copynumber: 3.2 Consensus size: 122
3074153 CAACTCAACA
*** * * *
3074163 TTTTCATTTTTTTTTGTTTTTTGTTTTTGTTTTTTTTGTTTTTTTGTTTTTACCAAAGCTCCTTT
1 TTTTCA-TTTTTTTT-TTTTTTGTTTTT-TTTTTTTT-TTTTTTTAAATTGATCAAAGCTCCTCT
** *
3074228 AAATAGAGGCTCAACGACTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAGGTAACTTT
62 AAGCAGAGGCTCAATGACTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAGGTAACTTT
3074289 TTTTCATTTTTTTGGCTTTTTTTGTTTTTTTTTTTCTTTTTTTTTAAATTGATCAAAGCTCCTCT
1 TTTTCATTTTTTT---TTTTTTTGTTTTTTTTTTT-TTTTTTTTTAAATTGATCAAAGCTCCTCT
* *
3074354 AAGCAGAGGTTCAATGACTTTGAGAAACATAAACAAAGCTCCTCTAAATAGAGGTAA-TTT
62 AAGCAGAGGCTCAATGACTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAGGTAACTTT
* *
3074414 TTTT--TTTTAATTTTTTTTTGTTTTTTTGTTTTTTTTTTTTTAAAATGATCAAAGCTCCTCTAA
1 TTTTCATTTT-TTTTTTTTTTGTTTTTTT-TTTTTTTTTTTTTAAATTGATCAAAGCTCCTCTAA
* *
3074477 GCAGAGGCTCAATGACTTTGAGAAACATAAATGAAGCTCCTCTAAATAGAGGCAAC-TT
64 GCAGAGGCTCAATGACTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAGGTAACTTT
* *
3074535 TTTT-GTTTTTTTTGTTTTT-TTTTTT
1 TTTTCATTTTTTTTTTTTTTGTTTTTT
3074560 AAAAGCTCCT
Statistics
Matches: 244, Mismatches: 19, Indels: 22
0.86 0.07 0.08
Matches are distributed among these distances:
120 6 0.02
121 110 0.45
122 8 0.03
123 4 0.02
124 2 0.01
125 14 0.06
126 85 0.35
127 14 0.06
128 1 0.00
ACGTcount: A:0.25, C:0.12, G:0.13, T:0.50
Consensus pattern (122 bp):
TTTTCATTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTAAATTGATCAAAGCTCCTCTAAGC
AGAGGCTCAATGACTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAGGTAACTTT
Found at i:3074417 original size:1 final size:1
Alignment explanation
Indices: 3074411--3074454 Score: 52
Period size: 1 Copynumber: 44.0 Consensus size: 1
3074401 ATAGAGGTAA
** * *
3074411 TTTTTTTTTTTAATTTTTTTTTGTTTTTTTGTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
3074455 AAAATGATCA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:0.05, C:0.00, G:0.05, T:0.91
Consensus pattern (1 bp):
T
Found at i:3074426 original size:13 final size:13
Alignment explanation
Indices: 3074408--3074432 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3074398 TAAATAGAGG
3074408 TAATTTTTTTTTT
1 TAATTTTTTTTTT
3074421 TAATTTTTTTTT
1 TAATTTTTTTTT
3074433 GTTTTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (13 bp):
TAATTTTTTTTTT
Found at i:3074736 original size:42 final size:41
Alignment explanation
Indices: 3074564--3074841 Score: 502
Period size: 41 Copynumber: 6.7 Consensus size: 41
3074554 TTTTTTAAAA
* *
3074564 GCTCCTCTAAACAGAGGCTCGACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
3074605 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
3074646 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
3074687 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATT
3074729 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATT
*
3074771 GCTCCTCTAAACAGAGGCACCACGACTTTTAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAGTAAATT
3074813 GCTCCTCTAAACAGAGGCACCACGACTTT
1 GCTCCTCTAAACAGAGGCACCACGACTTT
3074842 CCCCTCTAAA
Statistics
Matches: 232, Mismatches: 3, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
41 114 0.49
42 114 0.49
43 4 0.02
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
Found at i:3074807 original size:84 final size:82
Alignment explanation
Indices: 3074564--3074841 Score: 502
Period size: 84 Copynumber: 3.4 Consensus size: 82
3074554 TTTTTTAAAA
* *
3074564 GCTCCTCTAAACAGAGGCTCGACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
3074629 ACTTTGGAAAGTAAATT
66 ACTTTGGAAAGTAAATT
3074646 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
3074711 ACTTTGGAAAAGTAAATT
66 ACTTTGG-AAAGTAAATT
3074729 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
*
3074794 GACTTTTAGAAAGTAAATT
65 GAC-TTTGGAAAGTAAATT
3074813 GCTCCTCTAAACAGAGGCACCACGACTTT
1 GCTCCTCTAAACAGAGGCACCACGACTTT
3074842 CCCCTCTAAA
Statistics
Matches: 190, Mismatches: 3, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
82 70 0.37
83 41 0.22
84 75 0.39
85 4 0.02
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (82 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
ACTTTGGAAAGTAAATT
Found at i:3074856 original size:28 final size:28
Alignment explanation
Indices: 3074816--3074869 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
3074806 GTAAATTGCT
3074816 CCTCTAAACAGAGGCACCACGACTTTCC
1 CCTCTAAACAGAGGCACCACGACTTTCC
*
3074844 CCTCTAAATAGAGGCACCACGACTTT
1 CCTCTAAACAGAGGCACCACGACTTT
3074870 GGAAAGTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.30, C:0.35, G:0.15, T:0.20
Consensus pattern (28 bp):
CCTCTAAACAGAGGCACCACGACTTTCC
Found at i:3074889 original size:41 final size:42
Alignment explanation
Indices: 3074844--3074928 Score: 154
Period size: 41 Copynumber: 2.0 Consensus size: 42
3074834 ACGACTTTCC
*
3074844 CCTCTAAATAGAGGCACCACGAC-TTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
3074885 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
3074927 CC
1 CC
3074929 CTGACAATCA
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
41 22 0.52
42 20 0.48
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.24
Consensus pattern (42 bp):
CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
Found at i:3074895 original size:69 final size:70
Alignment explanation
Indices: 3074774--3074910 Score: 249
Period size: 69 Copynumber: 2.0 Consensus size: 70
3074764 GTAAATTGCT
3074774 CCTCTAAACAGAGGCACCACGACTTTTAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
1 CCTCTAAACAGAGGCACCACGACTTTTAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
3074839 TTTCC
66 TTTCC
* *
3074844 CCTCTAAATAGAGGCACCACGAC-TTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
1 CCTCTAAACAGAGGCACCACGACTTTTAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
3074908 TTT
66 TTT
3074911 TGGAAAGTAA
Statistics
Matches: 65, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
69 43 0.66
70 22 0.34
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (70 bp):
CCTCTAAACAGAGGCACCACGACTTTTAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
TTTCC
Found at i:3075234 original size:43 final size:42
Alignment explanation
Indices: 3075128--3075264 Score: 136
Period size: 43 Copynumber: 3.2 Consensus size: 42
3075118 TCAAAGATCC
** * *
3075128 TCATTTGAATTTTGGAGGCTCACATCCAAAAGTT-AAAGGTTCT
1 TCATTTGAATTTTGGA-ATTCACATCCAAAAATTCAAAGCTT-T
** *
3075171 T-ATTTGGCAAACTTGGAATTCATATCCAAAAA-TCTAAAGCTTT
1 TCATTT-G-AATTTTGGAATTCACATCCAAAAATTC-AAAGCTTT
3075214 TCATTTGAATTTTGGAAATTCACATCCAAAAATTCAAAGCTTT
1 TCATTTGAATTTTGG-AATTCACATCCAAAAATTCAAAGCTTT
3075257 TCATTTGA
1 TCATTTGA
3075265 GTTCAAAGGC
Statistics
Matches: 77, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
42 11 0.14
43 47 0.61
44 19 0.25
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.36
Consensus pattern (42 bp):
TCATTTGAATTTTGGAATTCACATCCAAAAATTCAAAGCTTT
Found at i:3075496 original size:22 final size:22
Alignment explanation
Indices: 3075448--3075506 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
3075438 GGTTTCACTC
*
3075448 CTCAAGGATTCTCATTTTGAAAT
1 CTCAAAGATTCTCA-TTTGAAAT
**
3075471 -TCAAAGATTCTCATTTGAGTT
1 CTCAAAGATTCTCATTTGAAAT
*
3075492 CTCAAAAATTCTCAT
1 CTCAAAGATTCTCAT
3075507 CAAAACATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 6 0.19
22 25 0.81
ACGTcount: A:0.32, C:0.19, G:0.10, T:0.39
Consensus pattern (22 bp):
CTCAAAGATTCTCATTTGAAAT
Found at i:3076606 original size:8 final size:9
Alignment explanation
Indices: 3076578--3076628 Score: 61
Period size: 8 Copynumber: 5.8 Consensus size: 9
3076568 TTTGAATCTT
3076578 TTTTTTTCA
1 TTTTTTTCA
*
3076587 -TTTTCTCA
1 TTTTTTTCA
*
3076595 TTTTTTTCT
1 TTTTTTTCA
3076604 TTTTTTCTCA
1 TTTTTT-TCA
3076614 TTTTTTTC-
1 TTTTTTTCA
3076622 TTTTTTT
1 TTTTTTT
3076629 TTCATCATCT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
8 14 0.39
9 14 0.39
10 8 0.22
ACGTcount: A:0.06, C:0.14, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTTTTTCA
Found at i:3076619 original size:21 final size:20
Alignment explanation
Indices: 3076576--3076661 Score: 93
Period size: 19 Copynumber: 4.2 Consensus size: 20
3076566 AATTTGAATC
**
3076576 TTTTTTTTTCATTTTCTCA-
1 TTTTTTTTTTTTTTTCTCAT
*
3076595 TTTTTTTCTTTTTTTCTCAT
1 TTTTTTTTTTTTTTTCTCAT
3076615 TTTTTTCTTTTTTTTTCATCAT
1 TTTTTT-TTTTTTTTTC-TCAT
* *
3076637 CTTCTCTTTTTTTTTTCTCAT
1 -TTTTTTTTTTTTTTTCTCAT
3076658 TTTT
1 TTTT
3076662 CATCCATTGT
Statistics
Matches: 56, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
19 16 0.29
20 9 0.16
21 13 0.23
22 14 0.25
23 4 0.07
ACGTcount: A:0.07, C:0.16, G:0.00, T:0.77
Consensus pattern (20 bp):
TTTTTTTTTTTTTTTCTCAT
Found at i:3080568 original size:13 final size:14
Alignment explanation
Indices: 3080536--3080570 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
3080526 TTAACAGAAG
*
3080536 AAATAAAAATCCAC
1 AAATCAAAATCCAC
3080550 AAATCAAAATCCA-
1 AAATCAAAATCCAC
3080563 AAATCAAA
1 AAATCAAA
3080571 GAGAAAGGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.66, C:0.20, G:0.00, T:0.14
Consensus pattern (14 bp):
AAATCAAAATCCAC
Found at i:3080764 original size:59 final size:56
Alignment explanation
Indices: 3080602--3080887 Score: 275
Period size: 59 Copynumber: 4.7 Consensus size: 56
3080592 TCTTGTGTAG
* * * *
3080602 GGAAAATTGGATACTTTACAACCTTTTCCTTAAAAATAATTTTTTTTGAAATTGATTTTTTAG
1 GGAAAATT-GATACTTT-CAA-CTTTTCC-CAAAAAT-A-TTTTTTGGAAATTTA-TTTTTAA
3080665 GCGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
1 G-GAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTGGAAATTTATTTTTAA
* *
3080723 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAA--------TATTTTTTGGAAATTTATTTTTAA
* ** *
3080788 GGAAAATGGATACTTTCAACTTTTCCCTAAAAATATTTTTCAGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTGGAAA-TTT-ATTTTTAA
*
3080847 GGAATATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTT
3080888 TTGGAACTTT
Statistics
Matches: 193, Mismatches: 15, Indels: 34
0.80 0.06 0.14
Matches are distributed among these distances:
57 39 0.20
58 11 0.06
59 54 0.28
60 4 0.02
61 13 0.07
62 3 0.02
63 9 0.05
64 8 0.04
65 52 0.27
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.45
Consensus pattern (56 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTGGAAATTTATTTTTAA
Found at i:3080878 original size:124 final size:123
Alignment explanation
Indices: 3080641--3080880 Score: 367
Period size: 124 Copynumber: 1.9 Consensus size: 123
3080631 TTAAAAATAA
* *
3080641 TTTTTTTTGAAATTGATTTTTTAGGCGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTT
1 TTTTTTTTGAAATTGATTTTTTAAGCGAAAATGGATACTTTCAACTTTTCCCTAAAAATATTTTT
** * *
3080706 TGGAAATTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTT
66 CAGAAATTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATCCCTTTT
*
3080764 TTTTTTTTGAAAATTTA-TTTTTAAG-GAAAATGGATACTTTCAACTTTTCCCTAAAAATATTTT
1 TTTTTTTTG-AAATTGATTTTTTAAGCGAAAATGGATACTTTCAACTTTTCCCTAAAAATATTTT
*
3080827 TCAGAAATTTTGATTTTCAAGGAATATTGATACTTTCAACTTTTCCCCAAAAAT
65 TCAGAAA-TTT-ATTTTCAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAAT
3080881 ATTTTTTTTG
Statistics
Matches: 106, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
122 42 0.40
123 19 0.18
124 45 0.42
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.46
Consensus pattern (123 bp):
TTTTTTTTGAAATTGATTTTTTAAGCGAAAATGGATACTTTCAACTTTTCCCTAAAAATATTTTT
CAGAAATTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATCCCTTTT
Found at i:3080886 original size:122 final size:122
Alignment explanation
Indices: 3080641--3080889 Score: 360
Period size: 122 Copynumber: 2.0 Consensus size: 122
3080631 TTAAAAATAA
* *
3080641 TTTTTTTTGAAATTGATTTTTTAGGCGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTT
1 TTTTTTTTGAAATTGATTTTTTAAGCGAAAATGGATACTTTCAACTTTTCCCTAAAAATATTTTT
** * * *
3080706 TGGAAATTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTT
66 CAGAAATTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAAT-CATTTT
*
3080764 TTTTTTTTGAAAATTTA-TTTTTAAG-GAAAATGGATACTTTCAACTTTTCCCTAAAAATATTTT
1 TTTTTTTTG-AAATTGATTTTTTAAGCGAAAATGGATACTTTCAACTTTTCCCTAAAAATATTTT
*
3080827 TCAGAAATTTTGATTTTCAAGGAATATTGATACTTTCAACTTTTCCCCAAAAAT-ATTTT
65 TCAGAAA-TTT-ATTTTCAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATCATTTT
3080886 TTTT
1 TTTT
3080890 GGAACTTTTG
Statistics
Matches: 114, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
122 50 0.44
123 19 0.17
124 45 0.39
ACGTcount: A:0.32, C:0.12, G:0.08, T:0.47
Consensus pattern (122 bp):
TTTTTTTTGAAATTGATTTTTTAAGCGAAAATGGATACTTTCAACTTTTCCCTAAAAATATTTTT
CAGAAATTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATCATTTT
Found at i:3081056 original size:16 final size:16
Alignment explanation
Indices: 3080974--3081058 Score: 52
Period size: 16 Copynumber: 5.1 Consensus size: 16
3080964 AAGTAGAACA
3080974 AAAAT-AAAAATAAGAT
1 AAAATAAAAAATAA-AT
3080990 AAAGATAAAAAAT--AT
1 AAA-ATAAAAAATAAAT
* *
3081005 TAAATAAAACCTAATCTAAT
1 AAAATAAAA---AAT-AAAT
*
3081025 AAACAT-AAAAACAAAT
1 AAA-ATAAAAAATAAAT
3081041 AAAATAAAAAATAAAT
1 AAAATAAAAAATAAAT
3081057 AA
1 AA
3081059 TCAAATAAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 20
0.68 0.06 0.25
Matches are distributed among these distances:
14 6 0.11
15 6 0.11
16 20 0.37
17 7 0.13
18 6 0.11
20 7 0.13
21 2 0.04
ACGTcount: A:0.72, C:0.06, G:0.02, T:0.20
Consensus pattern (16 bp):
AAAATAAAAAATAAAT
Found at i:3083175 original size:31 final size:31
Alignment explanation
Indices: 3083117--3083175 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 31
3083107 ACTGGGCAAG
* ** *
3083117 TCACCGAAAACTTCAAGGTTGGCCGAAATTT
1 TCACCGAAAAATTCAAACTTCGCCGAAATTT
*
3083148 TCACCGAAAAATTCAAACTTCGTCGAAA
1 TCACCGAAAAATTCAAACTTCGCCGAAA
3083176 AATTCATCGG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 23 1.00
ACGTcount: A:0.37, C:0.24, G:0.15, T:0.24
Consensus pattern (31 bp):
TCACCGAAAAATTCAAACTTCGCCGAAATTT
Found at i:3083596 original size:27 final size:27
Alignment explanation
Indices: 3083512--3083673 Score: 103
Period size: 30 Copynumber: 5.6 Consensus size: 27
3083502 AAAATCAAAT
* *
3083512 AAATAAAAAAATAATTAGATAATTAGAAA
1 AAATAAAAAAA-AAATATATAATTA-AAA
*
3083541 AGATAATAAAAAAAATATTATAGGA-TAAAA
1 AAATAA-AAAAAAAATA-TATA--ATTAAAA
*
3083571 AAATAAAAAAAAAATATATAATTAAAT
1 AAATAAAAAAAAAATATATAATTAAAA
* *
3083598 AAATAAAAATACAAAAATAAATAA-AATAAA
1 AAAT-AAAA-A-AAAAATATATAATTA-AAA
* *
3083628 AAATAATAAAAAATATATATTATTAATAA
1 AAATAA-AAAAAAAATATATAATTAA-AA
* *
3083657 TAAATAAATAATAAATA
1 -AAATAAAAAAAAAATA
3083674 CATAGGATAT
Statistics
Matches: 105, Mismatches: 15, Indels: 26
0.72 0.10 0.18
Matches are distributed among these distances:
26 1 0.01
27 8 0.08
28 18 0.17
29 34 0.32
30 41 0.39
31 2 0.02
32 1 0.01
ACGTcount: A:0.71, C:0.01, G:0.03, T:0.25
Consensus pattern (27 bp):
AAATAAAAAAAAAATATATAATTAAAA
Found at i:3083600 original size:4 final size:4
Alignment explanation
Indices: 3083565--3083673 Score: 65
Period size: 4 Copynumber: 28.8 Consensus size: 4
3083555 ATATTATAGG
* * * *
3083565 ATAA AAAA ATAA A-AA AAAA ATAT ATAA TTAA ATAA AT-A A-AA ATACA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATA-A
* * *
3083611 A-AA ATAA ATAAA ATAA A-AA AT-A ATAA A-AA ATAT ATATT ATTA AT-A
1 ATAA ATAA AT-AA ATAA ATAA ATAA ATAA ATAA ATAA ATA-A ATAA ATAA
3083656 ATAA ATAA AT-A ATAA ATA
1 ATAA ATAA ATAA ATAA ATA
3083674 CATAGGATAT
Statistics
Matches: 83, Mismatches: 10, Indels: 24
0.71 0.09 0.21
Matches are distributed among these distances:
3 24 0.29
4 50 0.60
5 9 0.11
ACGTcount: A:0.73, C:0.01, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAA
Found at i:3083616 original size:30 final size:30
Alignment explanation
Indices: 3083503--3083671 Score: 108
Period size: 27 Copynumber: 5.6 Consensus size: 30
3083493 TCCAAAATAA
* *
3083503 AAATCAAATAAATAAAAAAATAATTAGATAATT
1 AAAT-AAATAAATAATAAAA-AA-TATATAATT
3083536 AGAA-AAGAT-AATAA-AAAAAATATTATAGGA-T
1 A-AATAA-ATAAATAATAAAAAATA-TATA--ATT
*
3083567 AAAAAAAT-AA-AA-AAAAAATATATAATT
1 AAATAAATAAATAATAAAAAATATATAATT
* *
3083594 AAATAAATAAA-AATACAAAA-ATA-AATA
1 AAATAAATAAATAATAAAAAATATATAATT
3083621 AAATAAA-AAATAATAAAAAATATATATTATT
1 AAATAAATAAATAATAAAAAATATATA--ATT
3083652 AATAATAAATAAATAATAAA
1 -A-AATAAATAAATAATAAA
3083672 TACATAGGAT
Statistics
Matches: 113, Mismatches: 6, Indels: 33
0.74 0.04 0.22
Matches are distributed among these distances:
26 4 0.04
27 26 0.23
28 14 0.12
29 18 0.16
30 11 0.10
31 10 0.09
32 9 0.08
33 9 0.08
34 12 0.11
ACGTcount: A:0.71, C:0.01, G:0.03, T:0.25
Consensus pattern (30 bp):
AAATAAATAAATAATAAAAAATATATAATT
Found at i:3083641 original size:22 final size:23
Alignment explanation
Indices: 3083568--3083642 Score: 77
Period size: 22 Copynumber: 3.3 Consensus size: 23
3083558 TTATAGGATA
*
3083568 AAAAAATAAAA-AAAAAATATAT
1 AAAAAATAAAATAAAAAATACAT
* *
3083590 AATTAAAT-AAAT-AAAAATACAA
1 AA-AAAATAAAATAAAAAATACAT
3083612 AAATAAATAAAATAAAAAATA-AT
1 AAA-AAATAAAATAAAAAATACAT
3083635 AAAAAATA
1 AAAAAATA
3083643 TATATTATTA
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
22 24 0.56
23 12 0.28
24 7 0.16
ACGTcount: A:0.79, C:0.01, G:0.00, T:0.20
Consensus pattern (23 bp):
AAAAAATAAAATAAAAAATACAT
Found at i:3083715 original size:16 final size:17
Alignment explanation
Indices: 3083686--3083720 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
3083676 TAGGATATAC
3083686 ATAAAATATAAAATAAA
1 ATAAAATATAAAATAAA
3083703 ATAAAA-ATAAAATAAA
1 ATAAAATATAAAATAAA
3083719 AT
1 AT
3083721 GAGTAAAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (17 bp):
ATAAAATATAAAATAAA
Found at i:3085401 original size:717 final size:716
Alignment explanation
Indices: 3084027--3085457 Score: 2097
Period size: 717 Copynumber: 2.0 Consensus size: 716
3084017 GCTGGCTGAG
* * *
3084027 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
1 CGCCCGCACGCTCGTTTCGTCGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* ** * * * *
3084092 TTGGACGAGGCGGTTTGCGGCAGCACATGCTGGGCTCTGGCATGTGCTGGTGCCGTATTTTCTTG
66 TCGGACGAGGCGGTTTGCAACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTCTTC
* *
3084157 TCGGGGGCACCATCGCCGGAGCGTCGCCAGAGAACATGACCGACGGCATCGGGGTTTCAACGATC
131 ACGGGGGCACCATCGCCGGAGCATCGCCAGAGAACATGACCGACGGCATCGGGGTTTCAACGATC
* *
3084222 GGGGGGGCAGGGGGTGTGCGCACATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATGTTGGCC
196 GGGGGGGCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* **
3084287 CCCTATCCCTCATCAAAACTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATGGGTT
261 CCCTATCCCTCATCAAAACTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTT
3084352 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCAAATGTACACAAAATCTTGT
326 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCAAATGTACACAAAATCTTGT
* * *
3084417 ACACTTCGAGTTTTTAGCTGATTGGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
391 ACACTTCGAGTTTTTAGCTAAATGGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
* *
3084482 AAGTTTGGGGCAAAAACTCCTTCTGAAAATATTTTAAAAAATCCCGAACCATAAAAAGTTTTAAA
456 AAGTTTGGGGCAAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAA
** *
3084547 AATCATGAAAAATAGCGAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCAT
521 AATCATGAAAAATAGAAAACGAGTCATCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * *
3084612 TGTATGAATTTACAAACCATAAAAATGGCATTCGCACATAGAAATATGAAGATGTGCCTAAACCC
586 TGTATAAATTTACAAACCATAAAAATGGCATTCGCACACAGAAATATGAAGAAGTGCCGAAACCC
* * *
3084677 ACCTACCACCCTATCGATCCATGGCTTG-CGTATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
651 ACCTACCACCCAATCGATCCACGGCTTGACGT-T-CCATCTCTCTGGCCGGCGTAGTGCCCGCCC
3084741 ACC
714 ACC
* *
3084744 CGCCCGC-CTGCTCGTTTCGTCGGTTGGCTTAAGCATACGGGGTTCATTCCCAGTCTAAGATCAG
1 CGCCCGCAC-GCTCGTTTCGTCGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
*
3084808 ATCGGACCGA-G-GG-TTGCAATAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
65 ATCGGA-CGAGGCGGTTTGCAACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCA-TTTTC
* ** ** * * * * **
3084870 TTCACTGGGGCACCATCGTTGGAGCATCGCTGGAGAACCTGATCGGCGGCATTGGGG-TTCTGGC
128 TTCACGGGGGCACCATCGCCGGAGCATCGCCAGAGAACATGACCGACGGCATCGGGGTTTC-AAC
3084934 GATCGGGGGGGTC-GGGGG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
192 GATCGGGGGGG-CAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * * * *
3084997 TGGCCCGCTATCCCTTATCTAACCTCAAGGACTCACACCCCCTTAAAGAGCATTTGAGATTTTAA
256 TGGCCCCCTATCCCTCATCAAAACTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAA
3085062 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT-CACAAA
321 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAAT-GTACACAAA
* *
3085126 ATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGTGCATGCCAAAAAAAATATAAGGATCAC
384 ATCTTGTACACTTCGAGTTTTTAGCTAAATGGTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
* ** * * *
3085191 GTCTACCACGTTTGGGGCCGAAACTCCTTCTGAAAAAATTTTAGAAAATCTCGAACTCGTAAAAA
449 GTCTACCAAGTTTGGGGCAAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAAC-CATAAAAA
*
3085256 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAA
513 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATAAAACTTCACGTGAAGGCTTAA
* * * ** *
3085321 GGGACCATTGTATAAATTTACAAGCTATAAAAATGGCATTGGCATGCAGAAATATGAAGAAGTGT
578 GGGACCATTGTATAAATTTACAAACCATAAAAATGGCATTCGCACACAGAAATATGAAGAAGTGC
*
3085386 CGAAACCCACCTACCACCCAATCGATCCACGGCTTGCACGTTGCATCTCTCTGGCCGGCGTAGTG
643 CGAAACCCACCTACCACCCAATCGATCCACGGCTTG-ACGTTCCATCTCTCTGGCCGGCGTAGTG
3085451 CCCGCCC
707 CCCGCCC
3085458 GCTCGTTTCA
Statistics
Matches: 637, Mismatches: 67, Indels: 20
0.88 0.09 0.03
Matches are distributed among these distances:
715 184 0.29
716 196 0.31
717 250 0.39
718 4 0.01
719 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (716 bp):
CGCCCGCACGCTCGTTTCGTCGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
TCGGACGAGGCGGTTTGCAACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTCTTC
ACGGGGGCACCATCGCCGGAGCATCGCCAGAGAACATGACCGACGGCATCGGGGTTTCAACGATC
GGGGGGGCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
CCCTATCCCTCATCAAAACTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTT
TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCAAATGTACACAAAATCTTGT
ACACTTCGAGTTTTTAGCTAAATGGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
AAGTTTGGGGCAAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAA
AATCATGAAAAATAGAAAACGAGTCATCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCAT
TGTATAAATTTACAAACCATAAAAATGGCATTCGCACACAGAAATATGAAGAAGTGCCGAAACCC
ACCTACCACCCAATCGATCCACGGCTTGACGTTCCATCTCTCTGGCCGGCGTAGTGCCCGCCCAC
C
Found at i:3086122 original size:865 final size:865
Alignment explanation
Indices: 3084744--3087028 Score: 2921
Period size: 865 Copynumber: 2.6 Consensus size: 865
3084734 CCCGCCCACC
* * * * *
3084744 CGCCCGC-CTGCTCGTTTCGTC-GGTTGGCTTAAGCATACGGGGTTCATTCCCAGTCTAAGATCA
1 CGCCCGCAC-GCTCGTTTCG-CGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAGCG
* * * * *
3084807 GATCGGACCGAGGGTTGCAATAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
64 GACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTT
* *
3084872 CACTGGGGCACCATCGTTGGAGCATCGCTGGAGAACCTGATCGGCGGCATTGGGGTTCTGGCGAT
129 CAC-GGGGCACCATCGTTGGAGCATCGCAGGAGAACCTGA-CGGCGGCATT-GGGTTC-AGCGAT
* *
3084937 CGGGGGGGTCGGGGGGT-GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
190 CAGGGGGGCCGGGGGGTGGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * * * *
3085001 CCGCTATCCCTTATCTAACCTCAAGGACTCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGT
255 CC-CTATCCCTCATCAAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTATAGGT
* *
3085066 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
319 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTCTTTTCAAATGATCACAAAATCTT
* * * * * *
3085131 GTACACTTCGAGTTTTTAGCTAAATGTTTTTGTGCATGCCAAAAAAAATATAAGGATCACGTCTA
384 GTACACTTTGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * * * **
3085196 CCACGTTTGGGGCCGAAACTCCTTCTGAAAAAATTTTAGAAAATCTCGAACTCGTAAAAAGTTTC
449 CCAAGTTTGGGGCCAAAACTCCTTC-CAAAAAATTTTAAAAAATCCCGAAC-CACAAAAAGTTTC
3085261 AAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
512 AAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* **
3085326 CATTGTATAAATTTACAAGCTATAAAAATGGCATTGGCATGCAGAAATATGAAGAAGTGTCGAAA
577 CATTGTATAAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAAGTCCCGAAA
* ** * *
3085391 CCCACCTACCACCCAATCGATCCACGGCTTGCACGTTGCATCTCTCTGG-C-C-G-G-CG-TAG-
642 CCCACCTACCACCCAATCGATCCACGGCTTGCACATCCCATCTCTCGGGCCACAGTGCCGCCAGC
* *
3085449 TGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGA
707 TGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGA
* * *
3085514 CCAGACTGA-GGTATATGGCAGC-AGCATC-AGCAGCACGTAGAGGGGGACCC-GACCGATCCTC
772 CCAGACTGAGGGT-TACGGCAGCAAG-ATCGA-CACCACGCAGAGGGGGACCCAG-CCGATCCTC
* * * * *
3085575 GGCTTGCGCATCTTGCCCCTCTGGCCGGTTGAG
833 GGCTTACGCATCCTACCCCTCTAGCCGGCTGAG
3085608 CGCCCGCACGCTCGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAGCGGA
1 CGCCCGCACGCTCGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAGCGGA
* *
3085673 CCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG
66 CCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTC-
* ** * * * * *
3085738 TCGGGGTGCCATC-ATCGAGCATTTGCCGG-GAACCGCCTGACCGCGGCATTGGGTTCAGCGATC
130 ACGGGGCACCATCGTTGGAGCA-TCGCAGGAGAA---CCTGACGGCGGCATTGGGTTCAGCGATC
* *
3085801 -GGGGGGCCGAGGGGGTGCGCGCACATGATGTGCGATGGGTGCTTGTACTTAGCCCTTATATTGG
191 AGGGGGGCCG-GGGGGTG-GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
*
3085865 CTCCCTATCCCTCATCAAACCTCCAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTATAGG
254 C-CCCTATCCCTCATCAAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTATAGG
*
3085930 TTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTCTTTTCAAATGATCACAAAATCT
318 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTCTTTTCAAATGATCACAAAATCT
* * *
3085995 TGTACACTTTGACTTTTTAGCTGATTTTTTTTTATGCATGCCAACAAAAATAGAAGGATCACGTC
383 TGTACACTTTGAGTTTTTAGCTGA-TTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* **
3086060 TACCAAGTTTGAGGCCAAAACTATTTCCATAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTT
447 TACCAAGTTTGGGGCCAAAACTCCTTCCA-AAAAATTTTAAAAAATCCCGAACCACAAAAAGTTT
** * * * * *
3086125 TGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCTTTAAACTTCACGTGAAGGCTTAAGGGA
511 CAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * *
3086190 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTCCCTAA
576 CCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAAGTCCCGAA
* * *
3086255 ACCCACCTACCATCCTATCGATCCACGGCTTGCACATCCCGTCTCTCGGGCCTACATAGTGCCCG
641 ACCCACCTACCACCCAATCGATCCACGGCTTGCACATCCCATCTCTCGGGCC-AC--AGTG-CCG
* * * * *
3086320 CCCGCCTGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAGG
702 CCAG-CTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAG
* *
3086385 ATCAGACCAGACTGAGGGTTGCGGCAGCAAGATCGACACCACGCAGAGGGGGACCCAGTCGATCC
766 ATCAGACCAGACTGAGGGTTACGGCAGCAAGATCGACACCACGCAGAGGGGGACCCAGCCGATCC
*
3086450 TTGGCTTACGCATCCTACCCCTCTAGCCGGCTGAG
831 TCGGCTTACGCATCCTACCCCTCTAGCCGGCTGAG
* * * * *
3086485 TGCCTGCACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTACG
1 CGCCCGCACGCTCGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATT-CC---C--A--GT-C-
* *
3086550 GAGTTCATTCTCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGTTCGAGC
56 ----T-A-----AG----AG--CGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGC
* *
3086615 ATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTTGGAGTATCGCAGGAGAACCTGAC
105 ATGTGCTGGTGCCGCATTTTTCTTCA-CGGGGCACCATCGTTGGAGCATCGCAGGAGAACCTGAC
* *
3086680 AGGCGGAATTGAGGTTCCGACGATCAGGGGGGCCGTGGGGGTGTGCGCACATGATGTGCGATGGG
169 -GGCGGCATTG-GGTTCAG-CGATCAGGGGGGCCG-GGGGGTG-GCGCACATGATGTGCGATGGG
* *
3086745 TGCTGGTACTTGGCGCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAACCCCCT
229 TGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCAAACCCCCT
3086810 TAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
293 TAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
3086875 CTCTTTTCAAATGATCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTGTGCATGC
358 CTCTTTTCAAATGATCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTGTGCATGC
* *
3086940 CAACAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAGTTTTAA
423 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAA
3087005 AAAATCCCGAACCACAAAAAGTTT
487 AAAATCCCGAACCACAAAAAGTTT
3087029 TGAAATATGA
Statistics
Matches: 1231, Mismatches: 126, Indels: 88
0.85 0.09 0.06
Matches are distributed among these distances:
862 8 0.01
863 22 0.02
864 133 0.11
865 365 0.30
866 86 0.07
868 1 0.00
871 1 0.00
872 1 0.00
874 2 0.00
875 1 0.00
877 174 0.14
878 9 0.01
881 1 0.00
883 1 0.00
885 2 0.00
886 1 0.00
891 1 0.00
892 1 0.00
897 2 0.00
901 8 0.01
902 8 0.01
903 84 0.07
904 109 0.09
905 209 0.17
906 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (865 bp):
CGCCCGCACGCTCGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAGCGGA
CCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCA
CGGGGCACCATCGTTGGAGCATCGCAGGAGAACCTGACGGCGGCATTGGGTTCAGCGATCAGGGG
GGCCGGGGGGTGGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTAT
CCCTCATCAAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTCTTTTCAAATGATCACAAAATCTTGTACACT
TTGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
TGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCAT
GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATA
AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAAGTCCCGAAACCCACCTAC
CACCCAATCGATCCACGGCTTGCACATCCCATCTCTCGGGCCACAGTGCCGCCAGCTGCCCGCCC
GCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACTGA
GGGTTACGGCAGCAAGATCGACACCACGCAGAGGGGGACCCAGCCGATCCTCGGCTTACGCATCC
TACCCCTCTAGCCGGCTGAG
Found at i:3086556 original size:26 final size:26
Alignment explanation
Indices: 3086520--3086569 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
3086510 GACTTAGGCA
3086520 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
*
3086546 TACGGAGTTCATTCTCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
3086570 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:3090424 original size:26 final size:26
Alignment explanation
Indices: 3090388--3090437 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
3090378 GACTTAGGCA
3090388 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
3090414 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
3090438 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:3090965 original size:904 final size:900
Alignment explanation
Indices: 3088614--3095520 Score: 8381
Period size: 892 Copynumber: 7.8 Consensus size: 900
3088604 GTTGACTTAG
* * * * *
3088614 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGTCCGAGGGTTGCGGCAGTAAAT-CTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGC-TGG
* * * *
3088678 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGAAG
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * * *
3088743 AACCTGACCGACGGCATTGGGGTTTCGATGATTGGGGGGGC-CGAGGGGGGTGTGCACACACGAT
130 AACCTGACCGACGGCATTGGGGTTCCGACGA-T-CGGGGGCTC--GGGGGGTGTGCGCACATGAT
* *
3088807 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
191 GTGCGATGGGTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
3088872 CACACTCCCTTACAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
3088937 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
3089002 TTTTGCATGCCAAGAAAAATACAAGGATC-ACGTCTTCCAAGTTTGGGGCCAAAA-TGCCTT-TC
386 TTGTGCATGCCAACAAAAATACAAGGATCTA--TCTACCAAGTTTGGGGCCAAAACT-CCTTCT-
* * * * * *
3089064 AAAAAAAGTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACAAGT
447 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
*
3089129 CGTCTTGCCATGAAACTTCACGTGAAGGCTCAAGGGACCATTGTATGAATTTACAAGCCATAAAA
512 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
3089194 ATGGCATTGTCACGCT-GTAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACG
577 ATGGCATTGGCACG-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
3089258 ACTTGCACATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTC
641 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTC
* * * * * ** * * *
3089323 TGTTGGCCTAGGCATACGGTGTTCATTCCCAATCTAAGAGCAGACTGGATCGAGGGTTGTGGTAG
706 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGCGGCAG
* * ** * * * *
3089388 CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTATGGATCGCACCCCTCTGGT
771 CAAGATCGGCAGCACGCAGAGGGGGACCCGATCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * *
3089453 CGGTTGAGCGCCCGTAAGCTCGTTTCGTGGGTTGACTTAGGCATA-GAGAGTTCATTCCCAGTCT
835 CGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG-GAGTTCATTCCCAGTCT
*
3089517 AG
899 AA
* * * * * * *
3089519 GCATA-GGAGTTCATTCTCGGTCTAAGATCAGACTACACTGAGGGTTGTGGCAGCAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
3089583 CTC-AGGCATGTGCTGGTGCCGCATTTTTCTTC-ACTGGGGCACCATCGTCGGAGAACAT-G-CG
66 CTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAG--CATCGCCG
* * * ** *
3089644 G-G---C--A--TACGGCATTAGGGTTTCGACGATCGGGGGGGCTGGGGGTGTGCGCACATGATG
127 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGCTCGGGGGGTGTGCGCACATGATG
* * **
3089701 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTTTCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
3089766 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAATAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
3089830 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTTGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
3089895 TTTGCATGCCAATAAAAATACAAGGATC-ACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAA
387 TGTGCATGCCAACAAAAATACAAGGATCTA--TCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* * ** * * *
3089959 AAAATTTTAAAAAATCCCAAATCAAAAAAAGTTTTACAAATCGTGAAAAATAGAAAATGAGTCGT
450 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
3090024 CTT-CCTATGAAACTTCACATGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAAT
515 CTTGCC-ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
3090088 GGCATTGGCATGTAGAAATATGAAGATGTACC-AAATCCCACCTACCACCCTATCGATCCACGGC
579 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAA-CCCACCTACCACCCTATCGATCCACGGC
* * * * *
3090152 TTGCGCATCCCGTCTCTTTGGCTGGTGTAGTGCCCGCCCGCCCGTCCGCCCGTTTGTTTCGTCGG
643 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGG
* ** * * *
3090217 TTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATTGGACCGGAACGATGGTTCCGGCAGCA
708 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGCGGCAGCA
* * * * *
3090282 AGATCGGTAGCACGTAGAGGGGGACCCGATCGATCTTCAGCTTACGCATCCCGCCCCTCTGGCCG
773 AGATCGGCAGCACGCAGAGGGGGACCCGATCGATC-CCGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
3090347 GTTGAGCGCCCGCACGCTCATTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
3090411 GCGTACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
3090476 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCACCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* *
3090541 ACCTGACCGATGGCATTGGGGTTCCGGA-GATCGGGGGCTCAGGGGGCGTGTGCGCACAAGATGT
131 ACCTGACCGACGGCATTGGGGTTCC-GACGATCGGGGGCTC-GGGGG-GTGTGCGCACATGATGT
* * * *
3090605 GCGATGGGTGTTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAACCCTCGAGGACTCA
193 GCGATGGGTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
3090670 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCTAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
3090735 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG-TCGAATTGTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-GAATTTTTT
* ** *
3090799 TGTGCATGCCAACAAAAATACAAGGATCGTATCTACCATGTTCAGGGCCAAAAGTCCTTCTGAAA
387 TGTGCATGCCAACAAAAATACAAGGATC-TATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * * *
3090864 AAATTTAAAAAAATCCCGAATCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
451 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
3090929 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTAAAAGCCATAAAAATGA
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * *
3090994 CATTGGCATGCAGAAATATGAAGATGTCCCCAATCCCACCTACCACCCTATCGATCCACGGCTTA
581 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
3091059 CGCATCCCGTCTCTCTGGCCGGCGTAGT--------G--C--CCGCCCACTCATTTCGTCGGTTG
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTG
* * * * *
3091112 GCTTAGGCATACGGAGTTCATTCCTAGT-TGAAGATCAGATCAGAATGATGGTTGCGACAGCAAG
711 GCTTAGGCATACGGAGTTCATTCCCAGTCT-AAGATCAGACCAGAACGAGGGTTGCGGCAGCAAG
* * * * *
3091176 ATCGGGAGCACGTAAAGGGGGACCCGATCGATCCCTAGCTTGCACATCCCGCCCCTCTGGCCGGC
775 ATCGGCAGCACGCAGAGGGGGACCCGATCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
3091241 TGAGCGCCCGCACACTCATTTCGTAGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTGA
839 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
3091303 GCGTACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
3091368 CTTGGGCATGTGCTGGTGCCTCATTTTTCTTTGTCGGGGCACCATTGCCGGAGCATCGCCAGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
*
3091433 ACCTGACCGGCGGCATTGGGGTTCCGGA-GATCGGGGGCTCGGGGGGCGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCC-GACGATCGGGGGCTC-GGGGG-GTGTGCGCACATGATGT
* * * * *
3091497 GTGGTGGGTGTTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAACCCTCGAAAACTCA
193 GCGATGGGTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
3091562 CACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
3091627 TGGGGATACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCAAGTTTTTAGTTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
3091692 GTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAA-TTT-GGGCTGAAAACTCCTTTTGAAA
388 GTGCATGCCAACAAAAATACAAGGATCTA-TCTACCAAGTTTGGGGC-CAAAACTCCTTCTGAAA
* * *
3091755 AAATTTTAAGAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATC
451 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
3091820 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGGATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** *
3091885 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCGTCTACCACCCTATCGATCCACGACTTG
581 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
3091950 CTCATCCCGTCTCTCTGGCCGACGTAATGCCCGCCCG--C--CCGCCCGCTCGCTTCGTTGGTTG
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTG
* * **
3092011 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCAG-ACTGAGGGTTGTAGCAGCAAG
711 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAAC-GAGGGTTGCGGCAGCAAG
* * * * ** * * *
3092075 ATCGGTAGCACGCAGAGGGGGACTC-TTCTTATCCCCGAATTACGCATCCTGCCCCTCTGGCCGA
775 ATCGGCAGCACGCAGAGGGGGACCCGATC-GAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * * * *
3092139 CTGAGTGCCCGCACGCTCGTTTCATTGGTTGACTTAGGCATACGTAGTTCATTCCTAGTCTTA
838 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
3092202 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAAAAGAGGGTTGTGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGG
** *
3092266 GCTCGAGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCAT--------C-T--TCGGAG
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * *
3092320 AACCTGACCGACAGCATTAGGGTTCCGACGATCGGGGGGGC-CGGGGGCTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATC--GGGGGCTCGGGGGGTGTGCGCACATGATGT
* * * *
3092384 GCGATGGGTGCTGGTACTTAGCCCTTATATTGG-CCCCTATCCCTCATCAAATCTCAAGAACTCA
193 GCGATGGGTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
3092448 CACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* ** *
3092513 TGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCCAAATTGTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
3092578 GTGCATGCCAACAAAATTACAAGGATCGTATCTACCAAGTTTAGGGCCAAAACTCCTT-TCGAAA
388 GTGCATGCCAACAAAAATACAAGGATC-TATCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAA
* * * *
3092642 AAATTTTAAAAAATCTCGAATCGTAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGTGTCGTC
451 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
3092707 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGGATGAATTTATAAACCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
3092772 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
581 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * * * *
3092837 CGCATCCTGCCTTTCTGGCTGGCATAGTGCCCGCTCGTCCGCCCGCCCGCTCATTTTGTCGGTTG
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTG
* ** * * ** *
3092902 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGCGATAGCAGGA
711 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGCGGCAGCAAGA
* * * * *
3092967 TCGGCAGCACACCGAGGGGGACCCGATCGATCCCCCGCTTGCGCATCCCGCCCCTCTTG-CAGCT
776 TCGGCAGCACGCAGAGGGGGACCCGATCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
3093031 GAGCACTCGCACGCTCCTTTCGT-GG--G---T-----T---GA---C-TT---AG-----
840 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
3093066 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
3093131 CTCGGGCATGTGCTAGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATTGCCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * * *
3093196 ACCTGACTGGCAGCATTGGGGTTCTGGA-GATCGGGGGGGTCAGGGGGGTGTCCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTC-CGACGATC-GGGGGCTC-GGGGGGTGTGCGCACATGATGT
*
3093260 GCGATGGGTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AACCTTCAAGAACTC
193 GCGATGGGTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTC
3093324 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
3093388 AGTAGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGTTGAATTTGT
322 A-TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
3093453 TTGTGGATACCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAA
386 TTGTGCATGCCAACAAAAATACAAGGATCTA-TCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* *
3093518 AAAATTTTAAAAAATTCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
450 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
3093583 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
3093648 GCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACAGCTT
580 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * ** *
3093713 GCGCATCCCGTTTTTCTGGCCGGCGTAGTGCCCGCCCGCCCGTTTGCCCGCTCATTTCGTCGGTT
645 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTT
* * * ** * * *
3093778 GGCTTAGGCATACAGAGTTCATTCCCGGTCTAAGATTAGACTGGACCGAGGGTTGTGGCAGCAGG
710 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGCGGCAGCAAG
* * * * * *
3093843 ATCGACAGCACGCAGAGAGGGACCTGACCGA-CACTCGGATTGCGCATCCCACCCCTCTGGCCGG
775 ATCGGCAGCACGCAGAGGGGGACCCGATCGATC-C-CGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
3093907 CTGAGCGCCCGCGCGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
838 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
3093970 GCATACGGAGTTAATTCCCAGTCTAAGATCAAACTAGTCCGAGGGTTACGGTAGCACATGCTGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
3094035 TTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGAGGCACCAT---C--A-C-T----GGCGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* *
3094089 ACCTAACCGACGACATTGGGGTTCCGACGATCGGAGGGGC-CGGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-G-GGGGCTC-GGGGGGTGTGCGCACATGATGT
* * * *
3094153 GCGATGGGTGCCGGTG--TATGGCCCTTATATTCGCCCCTTATCCCTTATCAAACCTCGAGAACT
193 GCGATGGGTGCTGG-GACT-TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
3094216 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
3094281 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
** * * * **
3094346 TTGTGCAAACAAAGAAAAATACAAGGATC-ATGACTACCATGTTTGGGGCCAAAACTCCTTCCAA
386 TTGTGCATGCCAACAAAAATACAAGGATCTAT--CTACCAAGTTTGGGGCCAAAACTCCTTCTGA
* * * * *
3094410 AAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCG
449 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
3094475 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCACAAAAAT
514 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
3094540 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCCCGGCT
579 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* ** * *
3094605 TACGCATCCCGTCTCTCTGGCCGATGTAGTGCCTGCCCGCCCG--CGCACTCGCTCGTTTTGTCG
644 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGC-C-CGCTCGTTTCGTCG
* * * * * * *
3094668 GTCGGCTTAGGCATATGGAGTTCATTCTCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGC
707 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGCGGCAGC
* * * * * * ** *
3094733 AAGATTGGCAGAACACAGAGGGGGACCCAACCAATCCCTGGCTTGCGCATCCTTCCCCTCTGGTC
772 AAGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCC
* * * * *
3094798 GGCTGAGCGCCCACACACTCGTTTCGTGGGTTCACTTAGGCTTACGGAGTTCATTCCCAGTCTAA
836 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
3094863 GCATACAGAGTTCATTCCCATTCTAAGATCGGA-TAGGACCGAGGGTTGCGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
3094927 GCTCGAGCATGTGCTGATGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGTATCGCCGGAG
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * ** * * *
3094992 AACCTAATCGACGGCATTGGGGTTCCAACGATCGGGGGGACGGGGGTTGTGCGCGCATGATGTGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGCTCGGGGGGTGTGCGCACATGATGTGC
* * *
3095057 GTTGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTTATCAAAACCTCGAGAACTCAC
195 GATGGGTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCGAGAACTCAC
* * * * *
3095121 ACCACCTTAAAGAGCATTTCAGATTTTATAGGTTTGCTGCCAGTAGCCACTAAAGTGTCAGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
3095186 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTT
* *
3095251 TTGCATGCCAACAAAAATACAAGGAT-TACCTCTACCAAGTTTGGGGCCAAAACTTCTT-TCGAA
388 GTGCATGCCAACAAAAATACAAGGATCTA--TCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAA
* *
3095314 AAAATTTTCAAAAATCTCGAACCGTAAAAAGTTTTC-AAAATC-------AT-GAAAA--A----
450 AAAATTTTAAAAAATCCCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
3095364 ---T---A-GAAA----ACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAAT
514 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
3095418 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCATGGCA
579 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* ** *
3095483 TGCGCATCCCGTCTCTATGGCTTGCGTAGTGCCTGCCC
644 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
3095521 TATCGATCCC
Statistics
Matches: 5242, Mismatches: 611, Indels: 325
0.85 0.10 0.05
Matches are distributed among these distances:
864 98 0.02
865 1 0.00
869 2 0.00
872 3 0.00
873 2 0.00
874 6 0.00
875 33 0.01
876 62 0.01
877 533 0.10
878 160 0.03
879 3 0.00
881 1 0.00
882 4 0.00
883 1 0.00
884 2 0.00
886 183 0.03
887 276 0.05
888 40 0.01
889 5 0.00
890 32 0.01
891 346 0.07
892 1120 0.21
893 975 0.19
894 22 0.00
895 8 0.00
896 25 0.00
897 2 0.00
898 7 0.00
899 274 0.05
900 6 0.00
901 37 0.01
902 189 0.04
903 208 0.04
904 560 0.11
905 12 0.00
906 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGCTCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCTATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGCGGCAGCAAGATCGGC
AGCACGCAGAGGGGGACCCGATCGATCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:3092213 original size:26 final size:27
Alignment explanation
Indices: 3092171--3092225 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
3092161 CATTGGTTGA
* *
3092171 CTTAGGCATACGTAGTTCATTCCTAGT
1 CTTAGGCATACGGAGTTCATTCCCAGT
3092198 CTTA-GCATACGGAGTTCATTCCCAGT
1 CTTAGGCATACGGAGTTCATTCCCAGT
3092224 CT
1 CT
3092226 AAGATCAGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
CTTAGGCATACGGAGTTCATTCCCAGT
Found at i:3093974 original size:26 final size:26
Alignment explanation
Indices: 3093944--3093996 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3093934 GTTGACTTAG
* *
3093944 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
*
3093970 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
3093996 G
1 G
3093997 ATCAAACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:3094452 original size:893 final size:890
Alignment explanation
Indices: 3093066--3095372 Score: 3054
Period size: 893 Copynumber: 2.6 Consensus size: 890
3093056 GTTGACTTAG
*
3093066 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
3093131 CTCGGGCATGTGCTAGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATTGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAG-A--ACC---TA
* * *
3093196 ACCTGACTGGCAGCATTGGGGTTCTGGA-GATCGGGGGGGTCAGGGGGGTGTCCGCACATGATGT
125 ACC-GAC--G-A-CATTGGGGTTC-CGACGATC-GGGGGGAC-GGGGGGTGTGCGCACATGATGT
* *
3093260 GCGATGGGTGCTGG-G-ACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AACCTTCAAGAAC
182 GCGATGGGTGCTGGTGTA--TGGCCCTTATATTGG-CCCCTATCCCTTATCAAACC-TCGAGAAC
3093322 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-
243 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
3093386 AAAGTAGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGTTGAATTT
308 AAA-TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
3093451 GTTTGTGGATACCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAAATCCTTCTG
372 TTTTGTGCATACCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
*
3093516 AAAAAATTTTAAAAAAT-TCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
437 AAAAAATTTTAAAAAATCT-CGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGT
* **
3093580 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAA
501 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCACAAAA
*
3093645 ATGGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACAG
566 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACAG
* * * * *
3093710 CTTGCGCATCCCGTTTTTCTGGCCGGCGTAGTGCCCGCCCGCCCGTTTGC-C-CGCTCATTTCGT
631 CTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG--CGCACTCGCTCATTTCGT
* * * * *
3093773 CGGTTGGCTTAGGCATACAGAGTTCATTCCCGGTCTAAGATTAGA-CTGGACCGAGGGTTGTGGC
694 CGGTCGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATC-AGACCGAGGGTTGCGGC
* * * ** *
3093837 AGCAGGATCGACAGCACGCAGAGAGGGACCTGACCGA-CACTCGGATTGCGCATCCCACCCCTCT
758 AGCAAGATCGACAGAACACAGAGAGGGACCCAACCAATCACT-GGATTGCGCATCCCACCCCTCT
* * * * *
3093901 GGCCGGCTGAGCGCCCGCGCGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGT
822 GGCCGGCTGAGCGCCCACACACTCATTTCATGGGTTCACTTAGGCATACAGAGTTCATTCCCAGT
3093966 CTAA
887 CTAA
* * * * ** *
3093970 GCATACGGAGTTAATTCCCAGTCTAAGATCAAACTAGTCCGAGGGTTACGGTAGCACATGCTGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
3094035 TTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGAGGCACCATCACTGGCGAACCTAACCGAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGAACCTAACCGAC
* *
3094100 GACATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCC
131 GACATTGGGGTTCCGACGATCGG-GGGGAC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
3094165 GGTGTATGGCCCTTATATTCGCCCCTTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAA
194 GGTGTATGGCCCTTATATTGGCCCC-TATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAA
3094230 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
258 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
3094295 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAACAAAG
323 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAC
* * * *
3094360 AAAAATACAAGGATCATGACTACCATGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
388 AAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* *
3094425 TCTCAAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
453 TCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
3094490 TCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCACAAAAATGGCATTGGCACGTAG
518 TCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCACAAAAATGGCATTGGCACGCAG
* * *
3094555 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCCCGGCTTACGCATCCCGTCTC
583 AAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACAGCTTACGCATCCCGTCTC
* * * * **
3094620 TCTGGCCGATGTAGTGCCTGCCCGCCCGCGCACTCGCTCGTTTTGTCGGTCGGCTTAGGCATATG
648 TCTGGCCGACGTAGTGCCCGCCCGCCCGCGCACTCGCTCATTTCGTCGGTCGGCTTAGGCATACA
* * * * *
3094685 GAGTTCATTCTCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCAAGATTGGCAGAACACA
713 GAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAAGATCGACAGAACACA
* * * ** *
3094750 GAGGGGGACCCAACCAATCCCTGGCTTGCGCATCCTTCCCCTCTGGTCGGCTGAGCGCCCACACA
778 GAGAGGGACCCAACCAATCACTGGATTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCACACA
* * * *
3094815 CTCGTTTCGTGGGTTCACTTAGGCTTACGGAGTTCATTCCCAGTCTAA
843 CTCATTTCATGGGTTCACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
3094863 GCATACAGAGTTCATTCCCATTCTAAGATCGGA-TAGGACCGAGGGTTGCGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTA-GACCGAGGGTTGCGACAGCACATGCTGG
* * * *
3094927 GCTCGAGCATGTGCTGATGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGTATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC-----A---CTGGAG
* * * * * *
3094992 AACCTAATCGACGGCATTGGGGTTCCAACGATCGGGGGGACGGGGGTTGTGCGCGCATGATGTGT
119 AACCTAACCGACGACATTGGGGTTCCGACGATCGGGGGGACGGGGGGTGTGCGCACATGATGTGC
* *
3095057 GTTGGGTGCTGGTACT-TGGCCCTTATATTGGCCCCTATCCCTTATCAAAACCTCGAGAACTCAC
184 GATGGGTGCTGGT-GTATGGCCCTTATATTGGCCCCTATCCCTTATC-AAACCTCGAGAACTCAC
* * * * *
3095121 ACCACCTTAAAGAGCATTTCAGATTTTATAGGTTTGCTGCCAGTAGCCACTAAAGTGTCAGAAAT
247 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
3095186 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
312 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTT
* * * ** * *
3095251 TTGCATGCCAACAAAAATACAAGGATTACCTCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAA
376 GTGCATACCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
3095316 AATTTTCAAAAATCTCGAACCGTAAAAAGTTTTCAAAATCATGAAAAATAGAAAACG
441 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACG
3095373 TGAAGGCTTA
Statistics
Matches: 1231, Mismatches: 145, Indels: 55
0.86 0.10 0.04
Matches are distributed among these distances:
891 2 0.00
892 11 0.01
893 738 0.60
894 14 0.01
895 2 0.00
896 2 0.00
897 3 0.00
898 4 0.00
901 14 0.01
902 184 0.15
903 119 0.10
904 138 0.11
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGAACCTAACCGAC
GACATTGGGGTTCCGACGATCGGGGGGACGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TGTATGGCCCTTATATTGGCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAA
AATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCT
CGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCACAAAAATGGCATTGGCACGCAGAAA
TATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACAGCTTACGCATCCCGTCTCTCT
GGCCGACGTAGTGCCCGCCCGCCCGCGCACTCGCTCATTTCGTCGGTCGGCTTAGGCATACAGAG
TTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAAGATCGACAGAACACAGAG
AGGGACCCAACCAATCACTGGATTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCACACACTC
ATTTCATGGGTTCACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:3095631 original size:26 final size:26
Alignment explanation
Indices: 3095593--3095670 Score: 120
Period size: 26 Copynumber: 3.0 Consensus size: 26
3095583 TGGGTTGACT
*
3095593 TAAGAATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
* *
3095619 TAAGCATATGGAGTTCATTCCCAATC
1 TAAGCATACGGAGTTCATTCCCAGTC
*
3095645 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
3095671 AAAGATCAGA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:3097364 original size:879 final size:877
Alignment explanation
Indices: 3095648--3101747 Score: 5460
Period size: 879 Copynumber: 6.9 Consensus size: 877
3095638 CCCAATCTAA
* * *
3095648 GCATACAGAGTTCATTCCCAGTCAAAGATCAGACC-AGACCGAAGGTTGCGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAGACCGAAGGTTGCGGCAGCACATGCTGG
* * ** * ** **
3095712 TCTCGGGTATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATTGCCAAAGCATCGTC-GAA
66 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGTCAG-A
* * *
3095776 GAACCTGACCGACGGC-TTTAGCGTTCCGACGATCGGAGGGGCCGGGGGGGTGTGCGCACATGAT
130 GAACCTGACCAACGGCATTGAG-GTTCCGACAATCGGAGGGGCC-GGGGGGTGTGCGCACATGAT
* *
3095840 GTGCGATGGGTGCTGGTACTTGGCCCATATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
3095905 CACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
3095970 AATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
3096035 TTGTGCATGCCAACAAAAATACAAGGATCACGTGTACCAAGTTTCCAGCCAAAACTCCTTCAGAA
388 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAAAACTCCTTCTGAA
* * * *
3096100 AAAATGTTAAAAAATGC-CGAATCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCG
453 AAAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
3096164 TCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
3096229 GGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACC-GCCTGATCTATCCACGGC
582 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT-ATCGATCCACGGC
* * * *
3096293 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGTCGACCCGCCCCCTCGTTTCGTC-G
646 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCG-CCCGCCCGCTCGTTTCGTCAG
* * * * * * *
3096357 ATTGGCATAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTAGCAAC
710 -TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGC
** ** *** *
3096422 AGGA-CTGACAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATTTTGCCTCTCTGGC
774 AGGATC-GACAGCACGTAGAAAGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * *
3096486 CGGCTAAGCGTCCACACGCTCGTTTCGTGGGTTGACTTAG
838 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* *
3096526 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAAGGTTACGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAGACCGAAGGTTGCGGCAGCACATGCTGG
** *
3096590 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATTGCCGAAGCATCGTCAGAG
66 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGTCAGAG
* *
3096655 AACCTAACCAACGGCATTGAGGTTCCGACAATCGGAGGGGCCGGGATGGGTGTGCGCACGTGATG
131 AACCTGACCAACGGCATTGAGGTTCCGACAATCGGAGGGGCCGGG--GGGTGTGCGCACATGATG
* * *
3096720 TGCGATGGGTGCTGGTACTTGGCCCATATATTGGGCCCGTATCCCTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
3096785 ACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCTAATAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
3096850 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* ** * *
3096915 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAACTTGCAGCCGAAACTCCTTCTGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAAAACTCCTTCTGAAA
* * * *
3096980 AAATTTGAAAAAATGC-CGAATCGTAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
454 AAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
3097044 CTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
3097109 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAGCCAACCTACCACCCTATCGATCCACGGCTT
583 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * *
3097174 GCGCATCCTGTCTCTCTGGTCGGGGTAGTGCCTGCCTGCCTGCTCGCCCGTTCGTTTCGTCAGTT
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC-GCCCGCCCGCTCGTTTCGTCAGTT
* * * * * *
3097239 GGCTTAGGCCTACGAAGTTTATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAACAGG
712 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGG
* * * **
3097304 ATCGACAGCACGTAGAAAGGGACCTGGTCGATCCCCGGCTTGCACATTCTACCCCTCTGGCCGGC
777 ATCGACAGCACGTAGAAAGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
3097369 TGAGCGCCCACACGCTCATTTCGTGGGTTGAGTTAG
842 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * ** * *
3097405 GCATACGGAGTTCATTCCCAGTCTCAGCATACGGAGTTCATTCCTAG-TCTAAGCATACGG-AGT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A--CCGAGACCGAAGGTTGCGGCAGC
* * *** * * * ** * * *** **
3097468 TCATTCCCAG-TCTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGC
57 ACATGCTGGGCTC-GGGC--AT-GTGCT-GGTGCC-GTAT-TTTTC--TTC-G-CC--GGG--GC
** * * * **** *** * * *
3097532 AGTAGCACATGCTGG-GC-TCGGGCATGTGCTGGTG-CCATATTTTTC-TTCATCGGTGCACCAT
107 ACCATCAC---C-GGAGCATC-GTCA-GAGAACCTGACCA-A--CGGCATTGA--GGTTC-CGA-
* *** *** ****** * * * * **** *
3097593 C-GTCGGAGAACCCGACCGGTG-GCATTGGGGTTCTGACGATCGGGGGGGCCAGGGGGGTGTGCG
159 CAATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTG-CGAT---GGGTG-CTGGTACTTG-GCC
** ** * ** *** ** * *** *****
3097656 CACATGA-TGTG--CGATGAGT-GCTGGTACTTGGCCTTTA-TA-T-TGGCCCCC-TATCCCTCA
218 CTTAT-ATTG-GCCCCCT-A-TCCCTCAT-C-AAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *** * ** ** * * * * *** *
3097713 --TCA-AACCT-CAAG--AACT-CACA--CCCCCTTAAAGAGCATGTGAGAT-TTTACAGGTTTT
277 TTTGAGATTTTACAGGTTTGCTGC-CAGTAGCCATTAAAGTG--TCTGAAATGGGGACA-CTTTT
* * * ** * ** ** * *** *
3097768 CTATC-AGTAGCCATTAAA--GTGT---C-T-GA---AAT-GGGGATACTTTTTT-CAAATGGTC
338 -T-TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTTGTGCAT-GCC
** * * * * *
3097820 -AC-AAAAT-CTTGTA-CACTTCGAGTTTTTAGCTGAATTGTTTTGGGCATGCCAACAAAAATAC
399 AACAAAAATACAAGGATCA---C--G--TCTA-C-CAA--G-TTT--GC--GGC--CAAAACT-C
** ** * * *
3097881 AAGGAT-TGTATCTACCAAGTTCAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCATGAA
445 ---CTTCTG-A---AAAAATTTTA-----AAAAAT-C-T-CG-AA--------------C-----
* *
3097945 CCGTAAAAAGTTTCAAAAATCGTTAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
475 -CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
3098010 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAACGGCATTAGCACGCAGAAATATG
539 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
*
3098075 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCT
604 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * * * *
3098140 AGCGTAGTGCCCGCCCACCCGCCCG-CTGCTCGTTTTGTCGGTTGGCTTAGGTATACGGAGTTGA
669 GGCGTAGTGCCCGCCC-GCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCA
* * * ** * * * *
3098204 TTCCCAGTCTAAGGTCAGACC-GAACTGAGGCTTACGGTAGTA--ATCG--TGGAC---G-AA-T
733 TTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGTGGTAGCAGGATCGACAGCACGTAGAAAGG
* * *
3098259 G--CCGATCGAT-CCTGGCTTGCTCAT-CCG-CCCTCTGG-C-GCTGAGCGCCC-CACGCTC-TT
797 GACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
*
3098315 TAAT-GGTTGAC-TA-
862 TCATGGGTTGACTTAG
* * ** * *
3098328 GCATACGGAGTTCATTCTCAGTCTAAAGCGAGTTTTCAGTCTAAGACCGGAACGAGGTTGTGGTA
1 GCATACGGAGTTCATTCCCAGTCT-AA--GA----TCAGACCGAGACC-G-A--AGGTTGCGGCA
* * *
3098393 --ACATGCTGGGCTCGGGCATGTGCTGGTGCCCTATTTTTCTTCGTC-GGGCACCACCACC-GAG
55 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCACCGGAG
* * * *
3098454 CATCGTCGAGAAAACCTGATCAAGGGCATT--GGTGT--GACGATCGG-GGGG-CGAGGGGG-GT
120 CATCGTC-AGAGAACCTGACCAACGGCATTGAGGT-TCCGACAATCGGAGGGGCCG-GGGGGTGT
3098512 GC-CACATGA-GTGCGATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATTCAA
182 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA-TC-A
*
3098574 AACCTCGGAGAACTCACCACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAG-
245 AACCTC-GAGAACTCA-CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
3098637 CATTAAAGTGTCTGAAATGGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
308 CATTAAAGTGTCTGAAAT-GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
3098702 TTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGC
372 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGGC
* * * * *
3098766 CAAAACTGCTTCCGAAAAAATTTTAAAAAATCCCGAATCGCAAAAAGTTTCAAAAATCATGAAAA
437 CAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAA
* *
3098831 ATAGAAAACGAGTCGTCATGCCATGAAACTTCACGTGAAGGCTTAAGGGACCTTTGTATGAATTT
502 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * * *
3098896 ACAAGCCATAAAAATGGCATTGGTATGCAGAAATATGAAGATGTGCCCAAACGCACCTATCACCC
567 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
3098961 TATCGATCCACGGCTTACGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCC
632 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCC
* * * **
3099026 GATCGTTTCGTCAGTTGGCTGAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTAA
696 GCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* * * * * *
3099091 GGGTTGCGATAGCAGGATCGGCAGCACGTAGAGAA-GGACCCAGTCGATCCCTGGCTTGCGCACC
761 GGGTTGTGGTAGCAGGATCGACAGCACGTAGA-AAGGGACCCGGTCGATCCCCGGCTTGCGCATC
* * * * * *
3099155 CCGCCTCTCTAGCTGGCTGAGCACCCGCACGCTCGTTTCATGTGTTGACTTGG
825 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * *
3099208 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAATCG-GACTGAGGGTTACGGCAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGAGACCGAAGGTTGCGGCAGCACATGCTG
* * * *
3099271 GGCTCGGGCATGTGTTGGTACC-TCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGG
65 GGCTCGGGCATGTGCTGGTGCCGT-ATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGTCAG
** * * ** * *
3099335 AGAACCTGA-CAGGTGGCATTGGGGTTCTGACGGTCGGGGGGGCCGGAGGGTGGGGTGCGCACAT
129 AGAACCTGACCA-ACGGCATTGAGGTTCCGACAATCGGAGGGGCC-G-GGG-GGTGTGCGCACAT
*
3099399 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
190 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
3099464 ACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTC
255 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
3099529 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAA-T
320 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * * * *
3099593 TTTTTATGCATGCCAACAAAAATACAAGGATAACATCTACCAAGTTTGGGGCCAAAACTGCTTCC
385 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAAAACTCCTTCT
* * *
3099658 GAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACAAGT
450 GAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* * * *
3099723 CGTCTTGCCATGAAACTTCATGTAAAGGTTTAAGGGACCATTGTATGAATTTACAGGCCATAAAA
515 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* ** * *
3099788 ATGGCATTGGCTCATAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGATCCACGA
580 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
3099853 CTTGCGCATCCCGTCTCTCTGG-C--CGAAGT-ACTG--C-CCGCCCGCCCGCTCGTTTCATCAG
645 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCAG
* * * * *
3099911 TTGGCTTGGGCATACGGAGTTCATTCCCAGTCTAGGATCAGACCAGACCAAGCGGTTTCTAGTAG
710 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG-GG-TTGTGGTAG
* * ** *
3099976 CAGGATCGAAAGCACGCAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGC
773 CAGGATCGACAGCACGTAGAAAGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * *** **
3100041 TGGTTGAGCATTCGCACGCTAATTTCATGGGTTGACTTAG
838 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
3100081 GCATACGGAGTTCATTCCCAGTCTAAGAAT-AGGGAGTTCTTTCCCAGTCGAAGATCGGATCAGA
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCA--GA---------C---CG-AGA-C----C-GA
* * * *
3100145 CCGAGGGTTGCGGCAGCACATGCTGGGGTTGGGCATGTGCTGGTACCGTATTTTTCTTTGCCGGG
44 ---A-GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGG
* * * * * *
3100210 GCACCATCACAGGAGCATC-ACCGAAGAACCTGACCGACGGCATTGACGTTTCGACAATC-GAGG
105 GCACCATCACCGGAGCATCGTCAG-AGAACCTGACCAACGGCATTGAGGTTCCGACAATCGGA-G
* ** * * *
3100273 GGGCCAAGGCAGTGTGTGCACATGATATGCGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCC
168 GGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
** *
3100338 CTATCATTCATCAAACCTC-AGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTT
232 CTATCCCTCATCAAACCTCGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
3100402 GCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
296 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
3100467 ACACTT-GAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTAC
361 ACACTTCG-AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* *
3100531 CAAGTTTTGGGGCCAAAACTCCTT-TCG-AAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTC
425 CAAG-TTTGCGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTC
* *
3100594 AAAAATCATGAATAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
488 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* *
3100659 CATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACACAGAAATATGAAGATGTGCCTAAA
553 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
* * * * *
3100724 CCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTGTCTCTGGACGGTGTGGTGCCCGC
618 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* *
3100789 CCGCACGCCCGCCCGCTTGTTTCGTCAGTTGGCCTAGGCATACGGAGTTCATTCCCAGTCTAAGA
683 CCGC-CGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * ** *
3100854 TCGGACCAGACCGAGGGTTAG-GGTAGTAGGATCGGA-AGAACGTAGAGGGGGACCCGTTCGATC
747 TCAGACCAGACCGAGGGTT-GTGGTAGCAGGATC-GACAGCACGTAGAAAGGGACCCGGTCGATC
* * * *
3100917 CCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGTACGCTCGTTTCGTGGGTTGACT
810 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
3100982 TAG
875 TAG
* * * * * *
3100985 GCATGCAGAGTTCATTCCCAGTCTAAGATCCGA-CTAGACTGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAGACCGAAGGTTGCGGCAGCACATGCTGG
* * * *
3101049 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAG
66 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGTCAGAG
* *** * * *
3101114 AACCTAACCGGTGGAATTGGGGTTCCGA-AGATCGG-GGGGTCGGGGGGTGTGCGCACATGATGT
131 AACCTGACCAACGGCATTGAGGTTCCGACA-ATCGGAGGGGCCGGGGGGTGTGCGCACATGATGT
* *
3101177 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCGCATCAAACCTCGATAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
3101242 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
3101306 GGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATGTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * ** *
3101371 GTGCATGCCAACAAAAATACAAGGATCACATCCAATAAGTTTG-GGCCCAAAACTCCTT-TCAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGG-CCAAAACTCCTTCTGAAA
* *
3101434 AAAATTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
454 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * *
3101499 TTACCATGAAACTTGACGTGAAGGCTCAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
3101564 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
584 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
3101629 CGCATCCCGTCTTTTTGGCCGACGCAGTGCCCGTCCGCCTGCCCGCCCACTCGTTTCGTCGGTTG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC-GCCCGCCCGCTCGTTTCGTCAGTTG
** * * *
3101694 GCTTAGGCATACGGAGTTTTTTCCCAGTCTAAGATCGGACCGGACCAAGGGTTG
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
3101748 CGACAGTGAA
Statistics
Matches: 4240, Mismatches: 691, Indels: 587
0.77 0.13 0.11
Matches are distributed among these distances:
858 200 0.05
859 65 0.02
860 1 0.00
861 4 0.00
863 3 0.00
866 1 0.00
868 10 0.00
869 1 0.00
870 51 0.01
871 108 0.03
872 20 0.00
873 136 0.03
874 309 0.07
875 170 0.04
876 92 0.02
877 22 0.01
878 295 0.07
879 1005 0.24
880 62 0.01
881 25 0.01
882 34 0.01
883 2 0.00
886 3 0.00
887 19 0.00
888 18 0.00
889 19 0.00
890 10 0.00
891 11 0.00
892 11 0.00
893 7 0.00
894 18 0.00
895 21 0.00
896 8 0.00
897 197 0.05
898 260 0.06
899 148 0.03
900 14 0.00
901 28 0.01
902 13 0.00
903 15 0.00
904 143 0.03
905 28 0.01
906 93 0.02
907 18 0.00
908 14 0.00
909 23 0.01
910 25 0.01
911 15 0.00
912 19 0.00
913 7 0.00
914 4 0.00
915 1 0.00
916 7 0.00
917 1 0.00
919 2 0.00
920 2 0.00
921 12 0.00
922 4 0.00
923 25 0.01
924 6 0.00
925 17 0.00
926 14 0.00
927 8 0.00
928 12 0.00
929 2 0.00
930 8 0.00
931 1 0.00
932 12 0.00
933 7 0.00
935 1 0.00
936 2 0.00
937 1 0.00
940 3 0.00
942 4 0.00
943 1 0.00
944 62 0.01
945 198 0.05
946 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (877 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAGACCGAAGGTTGCGGCAGCACATGCTGG
GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGTCAGAG
AACCTGACCAACGGCATTGAGGTTCCGACAATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAAAACTCCTTCTGAAAAA
ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCAGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCG
ACAGCACGTAGAAAGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:3097441 original size:26 final size:25
Alignment explanation
Indices: 3097405--3097507 Score: 161
Period size: 26 Copynumber: 4.0 Consensus size: 25
3097395 GTTGAGTTAG
3097405 GCATACGGAGTTCATTCCCAGTCTCA
1 GCATACGGAGTTCATTCCCAGTCT-A
*
3097431 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCT-A
3097457 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
*
3097482 GGCATATGGAGTTCATTCCCAGTCTA
1 -GCATACGGAGTTCATTCCCAGTCTA
3097508 AGATCGAACC
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
25 1 0.01
26 71 0.99
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCAGTCTA
Found at i:3102662 original size:26 final size:26
Alignment explanation
Indices: 3102626--3102678 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3102616 GTTGACTTAG
3102626 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3102652 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3102678 G
1 G
3102679 ATTGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3103314 original size:903 final size:881
Alignment explanation
Indices: 3101856--3106820 Score: 5675
Period size: 903 Copynumber: 5.7 Consensus size: 881
3101846 GGGGGGGCCT
* * * * * * * *
3101856 GGGCACCATTGTCGGAGCATCATTAGAGAACCTGATCGACGGCTTTGGGGTTTCAGCGATCG-GG
1 GGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCGAGG
* **
3101920 GGGTCATGGGTGTGCGCACATGA--TGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCT
66 GGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
3101982 ATCCCTCATCAAACCTCGA-AACTCACACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCT
131 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
3102046 GCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
196 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
3102111 CTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAG
261 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
** *** * * ** *
3102176 TTCCGGGCCAAAACGGCTTTCGAAAAAA-TTTAAAAGATCCCAAACCGA-AAAATGTTTCAAAAA
326 TTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAAATCCTGAACC-ACAAAAAGTTTCAAAAA
* *
3102239 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTG
390 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*** * *
3102304 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCCAAACCAAC
455 TATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAC
* * ** *
3102369 CTACCATCCTATCGATCCATGACTTGCGCCATCCCGTCTCTCTGGTTGACGT-GTGCCCGGCCCG
520 CTACCA-CCTATCGATCCACGGCTTGCG-CATCCCGTCTCTCTGGCCGGCGTAGTGCCC-GCCCG
3102433 CCC-CCCGCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
582 CCCGCCCG-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
* * * * *
3102497 AGACAGGAATGAGGGCTATGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGGTCGATCCCCG
646 AGACAGGAATGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCAATCCCCG
* * *
3102562 GCTTGTGCATCCCGCCCCTCTGGCAGGCTGTGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
711 GCTTGCGCATCCCGCCCCTCTGGCAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
3102627 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACC
776 CATACGGAGTTCATTCCCAGTCTAAG-AT-C-GAG---A----CA--C----A---GA-CGGACC
* ** *
3102692 TAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCG
821 TAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCG
* * * *
3102753 GGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGAATTGGGGTTCCAACGATCGAGG
1 GGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCGAGG
* ** * **
3102818 GGGTCGGGGGATGTTTGCACATGATGTGTGATGGGTGCTGGCCCTTGGCCCTTATATTGGCCCCC
66 GGGCCGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
3102883 TATCCCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAAGTTTGC
130 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
3102948 TGCCAGTAGCCATTAATGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
195 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
3103013 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
260 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* *
3103078 GTTTGGGGCAAAAAATCCTTTCAAAAAAATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAA
325 GTTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAA
* * * * * *
3103143 TCTTGAGAAATAGAAAACGAGTCGTCATGCCACGAAACTTCACATGAAGGCTTAAGGGACCTTTG
390 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
3103208 TATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATAAAGATGTGCCTAAACCCAC
455 TATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAC
* *
3103273 CTATCATCCTATCGATCCACGGCTTGCGCATCCCTTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
520 CTACCA-CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* **
3103338 CGTCCATCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGA
584 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGA
** * ** **
3103403 TTGGAATGAGGGCTACGATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCAATCCCCGGCT
649 CAGGAATGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCAATCCCCGGCT
* * * * *
3103468 TGCACACCCCGCCCCTCTGGCTGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
714 TGCGCATCCCGCCCCTCTGGCAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
*
3103533 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATTGAACTGGA-TTGA
779 ACGGAGTTCATTCCCAGTCTAAG-AT-C-GAG---A----CA--C----A--G-AC-GGACCT-A
*
3103597 GGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCG
823 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCG
* * *
3103656 GGGCACCATCGCCGGAGCATCGTCAGAGAACTTGACCGACGACATTGGGGTTTCGAA-GATCGAG
1 GGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACCGACGGCATTGGGG-TTCCAACGATCGAG
*
3103720 GGGGCCAGGGGGTGTGCGCACATGATGTGGGATGGGTGCTGGTACTTGG-CC--------G----
65 GGGGCC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
3103772 ---T---T-ATCAAACCTCAAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
129 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
** *
3103830 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGGTACTTTGTTCAAATGGTCACAAAATCTTGTA
194 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * * *
3103895 CACTTTGTGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACTA
259 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * *
3103960 AGTTTGGGCCCAAAACA-CTTTTCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTT-AGA
324 AGTTTGGGGCCAAAA-ATCCTTTCAAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCA-A
* * *
3104023 AAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCA
387 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *** *
3104088 TTGTATGAATTTACAGGCCATAAAAATGGCATTGGCATGTAG-AA-AT----ATGTGCCTAATCC
452 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACC
* * * * *
3104147 CATCTACCACCCTATCGAACAATGGCTTGCGCATCCCGTCACTCTGGCCGGCGTAGTGCCCGCCC
517 CACCTACCA-CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG---
* * *
3104212 ACCCGCCCGCCCTCCCGCCCGCCTACTCGATTCGTCGGTTGGCTTAGGCATATGGATTTCATTCC
578 -CCCGCCCG----CCCGCCCG----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
** * * * *
3104277 CAGTCTAAGATGGGAC-TGAACTGAGGGTTACAGCAACAGGATCGGCCGCACGCAGAGGGGG-CC
634 CAGTCTAAGATTAGACAGGAA-TGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
* *
3104340 C---C--T------C---CG------G------T--C-GGCTGAGCGCTCGTACGCTCGTTTCGT
698 CGGTCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCAGGCTGAGCGCCCGCACGCTCGTTTCGT
* * *
3104376 GGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC-AGAC-CAGACCGAGC-A---TT
763 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACACAGACGGACCTAGGGTT
* * * ** *
3104435 ACGGCAGCACATGTTGGGCTTGGGCATGTGCTCATGCCGTATTTTTCTTTGCCG
828 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCG
* * ** **
3104489 AGGCACCATCGCCGGAGCATCGTC-GAAGAACCTGACCGACAGCATCAGGGTTCCGGCGATC-AG
1 GGGCACCATCGCCGGAGCATCGTCAG-AGAACCTGACCGACGGCATTGGGGTTCCAACGATCGAG
* * * *
3104552 GGGGCCGGGGGAGGGTGTGGGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTTGC
65 GGGGCC---GG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
3104617 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTAGAGATTTTACAGGT
126 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
3104682 TTGCTGCCAGTACCCATTAAAGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTT
191 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * *
3104747 GTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAGGGATCACATCTA
256 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * **
3104812 CCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCTGAACCACAAAACGTTTTG
321 CCAAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCA
*
3104877 AAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
386 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
3104942 ATTGTATGAATTTACAAGCCATAAAAATGGCCA-TGACACACAGAAATATGAAGTTGTGCCTAAA
451 ATTGTATGAATTTACAAGCCATAAAAATGG-CATTGGCACACAGAAATATGAAGATGTGCCTAAA
* * *
3105006 CCCACCTATCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCTC
515 CCCACCTACCACC-TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * * * *
3105071 CTGCCCGCCCGCCTGCTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGG
579 CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* ** * * *
3105136 TTGGA-TTGAACTGAGGGTTGCGGCAGCAGGATCGGTC-GCACGTAGAGGGGGCCCCGGTCAATC
644 TTAGACAGGAA-TGAGGGTTACGGCAGCAGGATCGG-CAGCACGCAGAGGGGGACCCGGTCAATC
* * * * * *
3105199 CCCGGATTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGTACGCTCGTTTTGTGGGTTGACT
707 CCCGGCTTGCGCATCCCGCCCCTCTGGCAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * *
3105264 TAGGCATACGGAGTTGATTCCCAGTCTAAGATCG-GAC-C--A--GACCAAGGGTTGCGGCAGCT
772 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACACAGACGGACCTAGGGTTGCGGCAGCA
* * * * *
3105323 CATGCTAGGCTCAGGCATCTGCTGGTGCCGCATTTTTCTTTGCCG
837 CATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCG
* * * * * * *
3105368 GGGCACCATCGCCAGAGCATCGTCAAAGAACCTGACCGGCGGCATCGAGGTTCCGGA-GATCGGG
1 GGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACCGACGGCATTGGGGTTCC-AACGATCGAG
** * * * * *
3105432 GGTTTCGGGGGGAGGGTGTGGGCACATGATGTACGGTGGGTGCTAGTACTTGGCCCTTATTTTGG
65 GG----GGCCGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
3105497 CCCCCTATCCCTCATCAAACCTCGAGAATTCACAGCCCCTTAAAGAGCATTTGAGATTTTACAGG
125 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
3105562 TTTGCTGCCAGTAGCCATTAAAGTGT-TCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
190 TTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
3105626 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCATGTC
254 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * * *
3105691 TACCAAGTTTGGGGCC-AAAA-CGCGTGCGAAAAAATTTTTTAAAAAT-CTCGAACTACAAAAAG
319 TACCAAGTTTGGGGCCAAAAATC-CTTTC-AAAAAAATTTTAAAAAATCCT-GAACCACAAAAAG
* ** * *
3105753 TTT-GAAAATCATGAAAAATAGAAAATAAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAA
381 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
***
3105817 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTGTACAGAAATATGAAGATGTGCC
446 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCC
* * * *
3105882 TAAACCCACCTACCACCCTATCGATCCACGGTTTGCGCATCTCGTCTCCCTGGCCGGTGTAGT--
511 TAAACCCACCTACCA-CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* * * * * * * ** *
3105945 --GCCTGCTCGCACGCCCGCTCATTTCGTCAGCTGGCTCAGGCATACATAGTTCACTCCCAGTCT
575 CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
** * * *
3106008 AAGATTAGACCA-GACA-GAGGGTTGGGGCAACAGGATCGGTAGCACGTAGAGGGGGACCCGGTC
640 AAGATTAGA-CAGGA-ATGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTC
* * * *
3106071 AATCCTCGACTTACGCATCCCGCCCCTCTGGCTA-GCTGAGCGCCCGCACACTCGTTTCGTGGGT
703 AATCCCCGGCTTGCGCATCCCGCCCCTCTGGC-AGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
3106135 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG-G--AC---CGGACCGAGGGTTGCAG
767 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACACAGACGGACCTAGGGTTGCGG
* *** * **
3106194 CAGCACATGCTAGGCTCGAAAATGTGTTGGTGCCGTATTTTTCTTCATCG
832 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCG
* * * * ** *
3106244 GGGCACCATCGTCGGAGCATCGCCAGACAACATGACCGACGGCATTGGGGTTCTGACGATCGGGG
1 GGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCGAGG
* *
3106309 GGGCCGGGGGTGTGCGCGCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATTTTGGCCCCCT
66 GGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
3106374 ATCCCTCATCAAACCTCGGGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTCACAGGTTTGCT
131 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
3106438 GCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
196 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * *
3106503 CTTCTAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACTTCTGCCAAG
261 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * *****
3106568 TTTGCGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAA-CCTCAAATTGTTAAAAGTTTCAAAAA
326 TTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAAATCCT-GAACCACAAAAAGTTTCAAAAA
* * * *
3106632 TCGTGATAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTT
390 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * * * *
3106697 TATGAATTTAGAAGCCATAAAAATGGCATTGGCATGA-AAAAATATCAAGATGTGGCTAAACCTA
455 TATGAATTTACAAGCCATAAAAATGGCATTGGCA-CACAGAAATATGAAGATGTGCCTAAACCCA
* *
3106761 CCTACCACCTATCGATCCATGGCTTGCGCATCCCCATCTCTCTGGCCGGCGTTAGTGCCC
519 CCTACCACCTATCGATCCACGGCTTGCGCAT-CCCGTCTCTCTGGCCGGCG-TAGTGCCC
3106821 CGACTGCCCG
Statistics
Matches: 3526, Mismatches: 405, Indels: 295
0.83 0.10 0.07
Matches are distributed among these distances:
832 12 0.00
833 95 0.03
834 2 0.00
835 37 0.01
836 3 0.00
837 2 0.00
838 2 0.00
839 1 0.00
841 1 0.00
844 1 0.00
845 1 0.00
848 1 0.00
849 87 0.02
850 4 0.00
851 1 0.00
852 1 0.00
853 8 0.00
854 2 0.00
855 324 0.09
856 4 0.00
857 10 0.00
858 2 0.00
859 61 0.02
860 3 0.00
861 62 0.02
862 1 0.00
864 2 0.00
868 1 0.00
870 215 0.06
871 224 0.06
872 10 0.00
874 1 0.00
875 6 0.00
876 300 0.09
877 70 0.02
878 2 0.00
879 167 0.05
880 183 0.05
881 288 0.08
882 3 0.00
883 322 0.09
884 4 0.00
885 6 0.00
887 1 0.00
888 6 0.00
889 84 0.02
894 1 0.00
897 50 0.01
898 10 0.00
899 11 0.00
901 31 0.01
902 30 0.01
903 582 0.17
904 188 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (881 bp):
GGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCGAGG
GGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
TTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAAT
CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACC
TACCACCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACA
GGAATGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCAATCCCCGGCTTG
CGCATCCCGCCCCTCTGGCAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCGAGACACAGACGGACCTAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCG
Found at i:3103565 original size:26 final size:26
Alignment explanation
Indices: 3103529--3103581 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3103519 GTTGACTTAG
3103529 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3103555 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3103581 G
1 G
3103582 ATTGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3104221 original size:12 final size:12
Alignment explanation
Indices: 3104204--3104234 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
3104194 CCGGCGTAGT
3104204 GCCCGCCCACCC
1 GCCCGCCCACCC
*
3104216 GCCCGCCCTCCC
1 GCCCGCCCACCC
3104228 GCCCGCC
1 GCCCGCC
3104235 TACTCGATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.03, C:0.74, G:0.19, T:0.03
Consensus pattern (12 bp):
GCCCGCCCACCC
Found at i:3108959 original size:907 final size:900
Alignment explanation
Indices: 3106861--3110568 Score: 4977
Period size: 907 Copynumber: 4.1 Consensus size: 900
3106851 TTTCCTTGCT
** ** * * ** *
3106861 GGGCACCATCATCGGAGCATCATCGAAGAACCTGACCGGCGGCATCGAAGTTCCGGCGATCGGGG
1 GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
*
3106926 GGGTCGGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGC-GGTACTTGGCCCTTATATTGGCC
66 GGG-CCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * *
3106990 CTTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAAGTTT
129 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
3107055 GCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACAC-TTTTTCGAAATGGTCACAAAATCTTG
194 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC-AAATGGTCACAAAATCTTG
* * *
3107119 TACACTTCGAGTTTTTAGATGAATTTTCTTGTGCATACCAACAAAAATACAAGGATCACGTCTAC
258 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * *
3107184 CAGGTTTGGGGCCAAAACCCCTTCCAAAAAAA-TTATGAAAAATCTCGAACCGCAAAAAGTTTCA
323 CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTA-AAAAAATCTCAAACCGCAAAAAGTTTCA
* *
3107248 AAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
387 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACC
*
3107313 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAAC
452 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * *
3107378 ACACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG----CC
517 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCACC
* * * *
3107439 CGCCCG-C-CCGCTCCTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTTTAAGATCG
582 CGCCCGCCACCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * * * * * *
3107502 GACTGAATCGAGAGTTGCGATAGCAGGATCAGTACCATGCAGGGGGGGACCCGACCGATCGCCGG
647 GACCGGACCAAGGGTTGCGATAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATC-CCAG
* * * *
3107567 CTTGCGCATCCCACCCCACTGGCCGGTTGAGCGCCCGCACGTTCATTTCGTGGGTTGACTTAGGC
711 CTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * * *
3107632 ATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAACACCAGACCGGACCG
776 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* * *
3107697 AGGGTTGCGATAGCACATGCTGGGCTCGGGCATTTGCTGGTGCCGCATTTTTCTTTGTCG
841 AGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * * *
3107757 GAGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGACAATCGGGG
1 GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
*
3107822 GGGCC-GGGGGGTGAGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
66 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCC
*
3107886 CTATCCCGCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
130 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
3107951 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
195 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* *
3108016 CACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
260 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
** * * * * **
3108081 TTTTTGGGGCCAAAACTCCTTTCAAAAAAATTTAAAAAAATCTCGAACCGTAAAAATTTTTGAAA
325 AGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCTCAAACCGCAAAAAGTTTCAAAA
* * * *
3108146 ATCGTGAAAAATTA-AAAACGAGTCATGTTGCCATGAAGCTTCATGTGAAGGCTTAAGGGACCAT
390 ATCGTGAAAAA-TAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCAT
* *
3108210 TGTTTGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCC
454 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * *
3108275 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCG
519 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCACCCG
* *
3108340 TCCGCCCACCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCTTTCCCAGTCTAAG
584 CCCG-CCA-----CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * ** * * * * *
3108405 ATTGGACCGGACTAAGGGTTATGGTAGCAAGATC-GACAGCACGTAGAGGGGGACTCGGCC-ATT
643 ATCAGACCGGACCAAGGGTTGCGATAGCAGGATCAG-CAGCACGCAGAGGGGGACCCGACCGA-T
* * * ** * *
3108468 CCCTAACTTCCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTTATGGGTGGAT
706 CCC-AGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * * *
3108533 TTAGGCATACGGAGTTCATTTCCAGTCTAAGTATATGGAGTTCATTCCCAGTCTAATATCGGACC
770 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* ** * * * *
3108598 AGACCGAGGGTTGCGGTAGCACATGTTGGGCTTGGGCATGTGCTAGTGCCGCATTTTTCTTCGAC
835 GGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
3108663 G
900 G
* * * *
3108664 GGGTACCATCGCCGGAGCATCGTCGGAGAACCTAACCGGCAGCATTGGGGTTCCGACGATCGGGG
1 GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
* *
3108729 GGACCGGGGGGGTGTGCCCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
66 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCC
* *
3108794 CTATCCCTCATCAAACCTCGAGAACTCACGCTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
130 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
3108859 CTGCCAGCAGCCATTAAAGTGTCT-AGAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGT
195 CTGCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
3108923 ACACTTTGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAGTACAAGGATCAGGTCTGCC
259 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * *
3108987 AAGTTTGGTGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAA
324 AAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCTCAAACCGCAAAAAGTTTCAAA
*
3109052 AATCGTTAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCAT
389 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCAT
* * *
3109117 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAATATGTGCCTAACCCC
454 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* *
3109182 AGCTACCACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCACCCG
519 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCACCCG
*
3109247 CCCGCCA--GCTCGTTTCGTCGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
584 CCCGCCACCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * * *
3109310 CCGAACCAA--GTTGCGACAGTAGGCTCAGTAGCACACAGAGGGGGACCCGACTGATCCCCGGCT
649 CCGGACCAAGGGTTGCGATAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGAT-CCCAGCT
* * * * * *
3109373 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGACCACACACTCGTTCCGTGGGTTGACTTAGGTAT
713 TGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* *
3109438 ACGGAGTTCATTCCCAGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAG
778 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
* * * * **
3109503 GGTTACGGCAGCACATGCT-GGCTCGAGCATATGCTGGTGCCATATTTTTCTTCGTCG
843 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * * *
3109560 AGG---CA----C----CATCGCCGGAGAATCTAACCGGCGGCATTGGTGTTTCGACGATC-GGG
1 GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
* * * * *
3109613 GGGCCCGGGGGGTGTGCGCACATGATGTACGGTTGGTGCTGGTACTTGGCCCTTTTATTGGCCCC
66 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
3109678 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAGTTTACAGGTTTGC
131 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
3109743 TGCCAGTAGCCATCAATGTTTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
196 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
3109808 ACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACATCTACCAA
261 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* *
3109873 GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTC-AAAA
326 GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCTCAAACCGCAAAAAGTTTCAAAAA
* * * * *
3109937 TCATGAAAAATAGAAAACCAGTCGTCTTGCCATGAAACTTTAGGTGAAGGCTTAAGCGAGCATTG
391 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTG
* * ** **
3110002 TATGAATTTACAAGCCAT-AAAATGGCATTTGCAGGCAGAAATATGAAGACATGCCTAAAATCAC
456 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
*
3110066 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGTCGACGTAGTGCCCACCCGCC
521 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCACCCGCC
* *
3110131 CGCCAGCTCGCTCGTTTCGTCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
586 CGCCA-C-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * *
3110196 CCAGACCGAGGGTTGCGGTAACAGGATCAGTAGCACGTAGAGGAGGACCCGACCGATCCGCAGCT
649 CCGGACCAAGGGTTGCGATAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCC-CAGCT
* * * * * * * *
3110261 TGCTCTTCCCGCCCCTCTGGCCGGTTGAGTGCCCGCACGC-CTGTTTTGCGGTTTGACTTAGGCA
713 TGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCA
* * *
3110325 TAAGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGA
777 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
* * *
3110390 AGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGT-G
842 GGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * * * *
3110448 GGGCACCATCACTGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGCGTTCCGGCAATCGGGG
1 GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
* * *
3110513 GGGTCGGGGGGGTTGTGCGCACATGGTGTGCGATGGATGCTGGTACTTGGCCCTTA
66 GGGCCGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
3110569 AAGTGTCTGA
Statistics
Matches: 2462, Mismatches: 300, Indels: 95
0.86 0.11 0.03
Matches are distributed among these distances:
882 104 0.04
883 223 0.09
884 151 0.06
885 39 0.02
886 59 0.02
887 3 0.00
888 171 0.07
889 34 0.01
891 2 0.00
893 34 0.01
894 21 0.01
895 406 0.16
896 100 0.04
897 158 0.06
898 5 0.00
899 103 0.04
900 13 0.01
901 38 0.02
906 9 0.00
907 590 0.24
908 199 0.08
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (900 bp):
GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCTCAAACCGCAAAAAGTTTCAAAAA
TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCACCCGCC
CGCCACCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
GGACCAAGGGTTGCGATAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCAGCTTGC
GCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
TGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
Found at i:3110358 original size:26 final size:26
Alignment explanation
Indices: 3110322--3110374 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3110312 TTTGACTTAG
3110322 GCATAAGGAGTTCATTCCCAATCTAA
1 GCATAAGGAGTTCATTCCCAATCTAA
* *
3110348 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAATCTAA
3110374 G
1 G
3110375 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAATCTAA
Found at i:3111370 original size:814 final size:811
Alignment explanation
Indices: 3109763--3111382 Score: 2136
Period size: 814 Copynumber: 2.0 Consensus size: 811
3109753 CATCAATGTT
3109763 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAA
1 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAA
*
3109828 TTTTTTTGTGCATGCCAATAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTT
66 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTT
3109893 CCAAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAATCATGAAAAATAGAAAACCAG
131 CCAAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAATCATGAAAAATAGAAAACCAG
* * * * * *
3109958 TCGTCTTGCCATGAAACTTTAGGTGAAGGCTTAAGCGAGCATTGTATGAATTTACAAGCCATAAA
196 TCATCTTCCCATGAAACTTCACGTGAAGGCTTAAGCGACCATTCTATGAATTTACAAGCCATAAA
* * * * *
3110023 ATGGCATTTGCAGGCAGAAATATGAAGACATGCCTAAAATCACCTACCACCCTATCGATCCACGG
261 ATGGCATTGGCACGCAGAAATATGAAGACATGCCTAAAACCACCTACCACCATATCGATCCACGA
* * * * * * *
3110088 CTTGCGCATCCCGCCTCTCTGGTCGACGTAGTGCCCACCCGCCCGCCAGCTCGCTCGTTTCGTCG
326 CTTGCGCAGCCAGCCTATCTGGCCGACATAGTGCCCACCCGCCCGCCAGCCCACTCGTTTCGTCG
*
3110153 ATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAAC
391 ATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAAC
* *
3110218 AGGATCAGTAGCACGTAGAGGAGGACCCGACCGATCCGCAGCTTGCTCTTCCCGCCCCTCTGGCC
456 AGGATCAGCAGCACGCAGAGGAGGACCCGACCGATCCGCAGCTTGCTCTTCCCGCCCCTCTGGCC
* *
3110283 GGTTGAGTGCCCGCACGCCTGTTTTGCGGTTTGACTTAGGCATAAGGAGTTCATTCCCAATCTAA
521 GGTTGAGTGCCCGCACGCCTGTTTTGCGGTTTGACTTAGGCATAAGAAGTTAATTCCCAATCTAA
*
3110348 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAAGGTTGCGACAGCACATGCTAGG
586 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAAGGTTACGACAGCACATGCTAGG
* * * * *
3110413 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTGGGGCACCATCACTGGAGCATCGCCAGAGAA
651 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTAGGGCACCATCACCGGAGCATCCCCAGAGAA
* * * * *
3110478 CCTGACCGGCGGCATTGGCGTTCCGGCAATCGGGGGGGTCGGGGGGGTTGTGCGCACATGGTGTG
716 CCTGACCGGCGGCATTGGCGTTCCAGCAATCGGGGGGGCCGGAGGGGTTGTGCGCACATGATGAG
3110543 CGATGGATGCTGGTACTTGGCCCTTAAAGTG
781 CGATGGATGCTGGTACTTGGCCCTTAAAGTG
*
3110574 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
1 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAA
* * *
3110639 TTTTTTT-TGCATGCCAAAAAAAATACAGGGATCATATCTACCAAGTTTGGGG-TAAAACATCCT
66 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAC-TCCT
** ** * * * **
3110702 TCCAAAAAAATTTTTAAAAATCCTGAACCGT-AAACGTTTCGAAAGTCGTGAAAAATA-AAAATG
130 TCCAAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTC-AAAATCATGAAAAATAGAAAACC
* * *
3110765 AGTCATCTTCCCGTGACACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATA
194 AGTCATCTTCCCATGAAACTTCACGTGAAGGCTTAAGCGACCATTCTATGAATTTACAAGCCAT-
* ** *
3110830 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATTCC
258 AAAATGGCATTGGCACGCAGAAATATGAAGACATGCCTAAAACCACCTACCACCATATCGA-TCC
* * *
3110895 ACGACTTGCGCAGCCAGTCTATCTGGCCTGACATAGTGCCGC-CCTGCCCGCGCCGCCCACTCGT
322 ACGACTTGCGCAGCCAGCCTATCTGGCC-GACATAGTGCC-CACCCGCCCGC-CAGCCCACTCGT
* * * * * *
3110959 TTCGTCGATTGGTTTTGGCATACGGAGTTTTATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT
384 TTCGTCGATTGGCTTAGGCATACAGAG-TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * * * * *
3111024 GTGGCAGCAGGATC-GACAGCATGCAGAGGGGGATCCGATCGATCC-CAAGCTTGAGCT-TTCCC
448 GCGGCAACAGGATCAG-CAGCACGCAGAGGAGGACCCGACCGATCCGC-AGCTT--GCTCTTCCC
* * * * *
3111086 GCCCGTCTGG-CTGTTGAGTGCCCGCAACG-CTCGTTTTGTGG-TTGACTTAGGTATACGAAGTT
509 GCCCCTCTGGCCGGTTGAGTGCCCGC-ACGCCT-GTTTTGCGGTTTGACTTAGGCATAAGAAGTT
* * * *
3111148 AATTCCCAGTCT-AGCATATGGAGTTCATT-CCACGTTCTAAGATCGGATTGGACTG-AGGTTAC
572 AATTCCCAATCTAAGCATACGGAGTTCATTCCCA-G-TCTAAGATCGGACTGGACCGAAGGTTAC
** * * * *
3111210 GGTAGCCACATGTTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTTGTCAGGGCACCATCGC
635 GACAG-CACATGCTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGT-AGGGCACCATCAC
** * * * * *
3111275 CGGAGCATCCCCAGAGAACCTGATTGGTGGCATTGGGGTTCTAGCGATCGGGGGGGCCTGAGGGG
698 CGGAGCATCCCCAGAGAACCTGACCGGCGGCATTGGCGTTCCAGCAATCGGGGGGGCCGGAGGGG
*
3111340 -TGTGCGCACATGATGAGCGATGGGTGCTGGTACTTGGCCCTTA
763 TTGTGCGCACATGATGAGCGATGGATGCTGGTACTTGGCCCTTA
3111383 TATTGGCCCC
Statistics
Matches: 698, Mismatches: 93, Indels: 33
0.85 0.11 0.04
Matches are distributed among these distances:
809 72 0.10
810 140 0.20
811 96 0.14
812 21 0.03
813 62 0.09
814 215 0.31
815 89 0.13
816 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (811 bp):
TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAA
TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTT
CCAAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAATCATGAAAAATAGAAAACCAG
TCATCTTCCCATGAAACTTCACGTGAAGGCTTAAGCGACCATTCTATGAATTTACAAGCCATAAA
ATGGCATTGGCACGCAGAAATATGAAGACATGCCTAAAACCACCTACCACCATATCGATCCACGA
CTTGCGCAGCCAGCCTATCTGGCCGACATAGTGCCCACCCGCCCGCCAGCCCACTCGTTTCGTCG
ATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAAC
AGGATCAGCAGCACGCAGAGGAGGACCCGACCGATCCGCAGCTTGCTCTTCCCGCCCCTCTGGCC
GGTTGAGTGCCCGCACGCCTGTTTTGCGGTTTGACTTAGGCATAAGAAGTTAATTCCCAATCTAA
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAAGGTTACGACAGCACATGCTAGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTAGGGCACCATCACCGGAGCATCCCCAGAGAA
CCTGACCGGCGGCATTGGCGTTCCAGCAATCGGGGGGGCCGGAGGGGTTGTGCGCACATGATGAG
CGATGGATGCTGGTACTTGGCCCTTAAAGTG
Found at i:3111681 original size:26 final size:26
Alignment explanation
Indices: 3111651--3111703 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3111641 GTTAACTTAG
3111651 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
* *
3111677 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
3111703 G
1 G
3111704 ATCAGATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTCTAA
Found at i:3113186 original size:4 final size:4
Alignment explanation
Indices: 3113174--3113257 Score: 57
Period size: 4 Copynumber: 20.8 Consensus size: 4
3113164 TAATATATAT
* * *
3113174 ATAA TTAA ATAAA ATAA ATAA ATAA ATAA ATAA A-ACA AAAA ATAA TAAAA
1 ATAA ATAA AT-AA ATAA ATAA ATAA ATAA ATAA ATA-A ATAA ATAA -ATAA
* * *
3113224 ATAT ATATT ATTA AT-A ATAA ATAA AT-A ATAA ATA
1 ATAA ATA-A ATAA ATAA ATAA ATAA ATAA ATAA ATA
3113258 CATAGGATAT
Statistics
Matches: 65, Mismatches: 8, Indels: 14
0.75 0.09 0.16
Matches are distributed among these distances:
3 7 0.11
4 47 0.72
5 11 0.17
ACGTcount: A:0.70, C:0.01, G:0.00, T:0.29
Consensus pattern (4 bp):
ATAA
Found at i:3113198 original size:21 final size:21
Alignment explanation
Indices: 3113159--3113219 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
3113149 AAAATATAAT
* *
3113159 AATAATAATATATATATAATTA
1 AATAA-AATAAATAAATAATTA
*
3113181 AATAAAATAAATAAATAAATA
1 AATAAAATAAATAAATAATTA
*
3113202 AATAAAACAAA-AAATAAT
1 AATAAAATAAATAAATAAT
3113220 AAAAATATAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
20 6 0.18
21 23 0.68
22 5 0.15
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (21 bp):
AATAAAATAAATAAATAATTA
Found at i:3113292 original size:10 final size:11
Alignment explanation
Indices: 3113270--3113303 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
3113260 TAGGATATAC
3113270 ATAAAATATAAA
1 ATAAAA-ATAAA
3113282 AT-AAAATAAA
1 ATAAAAATAAA
3113292 ATAAAAATAAA
1 ATAAAAATAAA
3113303 A
1 A
3113304 ATGACAAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 7 0.33
11 12 0.57
12 2 0.10
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (11 bp):
ATAAAAATAAA
Found at i:3113305 original size:17 final size:17
Alignment explanation
Indices: 3113270--3113303 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
3113260 TAGGATATAC
3113270 ATAAAATATAAAATAAA
1 ATAAAATATAAAATAAA
3113287 ATAAAATA-AAAATAAA
1 ATAAAATATAAAATAAA
3113303 A
1 A
3113304 ATGACAAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (17 bp):
ATAAAATATAAAATAAA
Found at i:3113574 original size:1 final size:1
Alignment explanation
Indices: 3113570--3113609 Score: 62
Period size: 1 Copynumber: 40.0 Consensus size: 1
3113560 CTTTTTTTCA
**
3113570 TTTTTTTTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
3113610 AAATTGATCA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
1 36 1.00
ACGTcount: A:0.00, C:0.03, G:0.03, T:0.95
Consensus pattern (1 bp):
T
Found at i:3113680 original size:128 final size:123
Alignment explanation
Indices: 3113492--3113852 Score: 496
Period size: 123 Copynumber: 2.9 Consensus size: 123
3113482 TTTTTTTACC
* * * * *
3113492 CAAAGCTCATTTAAACAGAGGTCAACGACTTTGAGTAACATAAATAAAGCTCCTCTAAATAGAGG
1 CAAAGCTCCTCTAAGCAGAGGTCAATGACTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAGG
*
3113557 TAACTTTTTTTCATTTTTTTTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATTGAT
66 TAACTTTTTTT--TTTTTTTT-CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATGAT
*
3113618 CAAAGCTCCTCTAAGCAGAGGTTCAATGACTTTGAGGAAACATAAACAAAGCTCCTCTAAATAGA
1 CAAAGCTCCTCTAAGCAGAGG-TCAATGACTTTGA-GAAACATAAATAAAGCTCCTCTAAATAGA
* *
3113683 GG-CA-TTTTTTTTTTTTGTTT-TTTATTTTTTTTTTTTTTTTTTTTTTTTTTAAAATGAT
64 GGTAACTTTTTTTTTTTT-TTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATGAT
*
3113741 CAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAGAAACATAAATGAAGCTCCTCTAAATAGAG
1 CAAAGCTCCTCTAAGCAGAGG-TCAATGACTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAG
* ** * *
3113806 GTAACTTTTTTGTTTTTTTT-TTTTTCCTATTTTTTTTGTTTTTTTTT
65 GTAACTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTT
3113853 AAAGCTCCTC
Statistics
Matches: 211, Mismatches: 19, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
122 29 0.14
123 96 0.45
124 16 0.08
125 3 0.01
126 25 0.12
127 13 0.06
128 29 0.14
ACGTcount: A:0.26, C:0.13, G:0.12, T:0.49
Consensus pattern (123 bp):
CAAAGCTCCTCTAAGCAGAGGTCAATGACTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAGG
TAACTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATGAT
Found at i:3113693 original size:1 final size:1
Alignment explanation
Indices: 3113687--3113732 Score: 74
Period size: 1 Copynumber: 46.0 Consensus size: 1
3113677 AATAGAGGCA
* *
3113687 TTTTTTTTTTTTGTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
3113733 AAAATGATCA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
1 41 1.00
ACGTcount: A:0.02, C:0.00, G:0.02, T:0.96
Consensus pattern (1 bp):
T
Found at i:3113925 original size:42 final size:41
Alignment explanation
Indices: 3113856--3114176 Score: 464
Period size: 42 Copynumber: 7.7 Consensus size: 41
3113846 TTTTTTTAAA
* *
3113856 GCTCCTCTAAACAGAGGCTCGACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
* * **
3113897 GCTCTTCTTAAACAGAGGCACCATGACTTTAAAAAGTAAATT
1 GCTCCTC-TAAACAGAGGCACCACGACTTTGGAAAGTAAATT
*
3113939 GCTCCTCTAAACAGAGGCACCATGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATT
*
3113981 GCTCCTCTAAACCA-AGGCACCACGACTTTGGAAAGTAAACT
1 GCTCCTCTAAA-CAGAGGCACCACGACTTTGGAAAGTAAATT
3114022 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATT
* * *
3114064 GCTCTTTTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAAGTAAATT
* *
3114106 GCTCCTCTAAATAGAGGCACCACGACTTTTAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAGTAAATT
3114148 GCTCCTCTAAACAGAGGCACCACGACTTT
1 GCTCCTCTAAACAGAGGCACCACGACTTT
3114177 CCCCTCCAAA
Statistics
Matches: 252, Mismatches: 21, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
40 2 0.01
41 68 0.27
42 177 0.70
43 5 0.02
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
Found at i:3113999 original size:83 final size:83
Alignment explanation
Indices: 3113856--3114176 Score: 477
Period size: 83 Copynumber: 3.9 Consensus size: 83
3113846 TTTTTTTAAA
* * *
3113856 GCTCCTCTAAACAGAGGCTCGACGACTTTGG-AAAGTAAATTGCTCTTCTTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTC-TAAACAGAGGCACCA
*
3113920 TGACTTTAAAAAGTAAATT
65 CGACTTTAAAAAGTAAATT
*
3113939 GCTCCTCTAAACAGAGGCACCATGACTTTGGAAAAGTAAATTGCTCCTCTAAACCA-AGGCACCA
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAA-CAGAGGCACCA
** *
3114003 CGACTTTGGAAAGTAAACT
65 CGACTTTAAAAAGTAAATT
* *
3114022 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCTTTTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
3114087 GACTTTGAAAAAGTAAATT
66 GACTTT-AAAAAGTAAATT
* *
3114106 GCTCCTCTAAATAGAGGCACCACGACTTT-TAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGA-AAAGTAAATTGCTCCTCTAAACAGAGGCACCA
3114170 CGACTTT
65 CGACTTT
3114177 CCCCTCCAAA
Statistics
Matches: 215, Mismatches: 18, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
82 2 0.01
83 121 0.56
84 92 0.43
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (83 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
GACTTTAAAAAGTAAATT
Found at i:3114078 original size:125 final size:124
Alignment explanation
Indices: 3113856--3114263 Score: 513
Period size: 125 Copynumber: 3.4 Consensus size: 124
3113846 TTTTTTTAAA
* * * *
3113856 GCTCCTCTAAACAGAGGCTCGACGACTTTGGAAAGTAAATTGCTCTTCTTAAACAGAGGCACCAT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTC-TAAACAGAGGCACCAC
* *
3113921 GACTTTAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCATGACTTTGGAAAAGTAAATT
65 GACTTTAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
*
3113981 GCTCCTCTAAACCA-AGGCACCACGACTTTGGAAAGTAAACTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAA-CAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
* * *
3114045 GACTTTGGAAAAGTAAATTGCTCTTTTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
65 GACTTT-AAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
* *
3114106 GCTCCTCTAAATAGAGGCACCACGACTTTTAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
* * * * *
3114171 GAC---------T---TT-CCCCTCCAAATAGAGTCACCACGACTTTG-GAAAGTAAATT
65 GACTTTAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
3114217 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCTCC
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAGTAAATTGCTCC
3114264 CTGACAATCA
Statistics
Matches: 257, Mismatches: 22, Indels: 22
0.85 0.07 0.07
Matches are distributed among these distances:
111 55 0.21
112 23 0.09
113 2 0.01
116 1 0.00
124 22 0.09
125 113 0.44
126 41 0.16
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (124 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
ACTTTAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
Found at i:3114196 original size:28 final size:28
Alignment explanation
Indices: 3114151--3114204 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
3114141 GTAAATTGCT
*
3114151 CCTCTAAACAGAGGCACCACGACTTTCC
1 CCTCCAAACAGAGGCACCACGACTTTCC
* *
3114179 CCTCCAAATAGAGTCACCACGACTTT
1 CCTCCAAACAGAGGCACCACGACTTT
3114205 GGAAAGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.30, C:0.37, G:0.13, T:0.20
Consensus pattern (28 bp):
CCTCCAAACAGAGGCACCACGACTTTCC
Found at i:3114226 original size:69 final size:70
Alignment explanation
Indices: 3114109--3114245 Score: 240
Period size: 69 Copynumber: 2.0 Consensus size: 70
3114099 GTAAATTGCT
*
3114109 CCTCTAAATAGAGGCACCACGACTTTTAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
1 CCTCCAAATAGAGGCACCACGACTTTTAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
3114174 TTTCC
66 TTTCC
* *
3114179 CCTCCAAATAGAGTCACCACGAC-TTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
1 CCTCCAAATAGAGGCACCACGACTTTTAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
3114243 TTT
66 TTT
3114246 TGGAAAGTAA
Statistics
Matches: 64, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
69 43 0.67
70 21 0.33
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (70 bp):
CCTCCAAATAGAGGCACCACGACTTTTAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
TTTCC
Found at i:3114255 original size:42 final size:41
Alignment explanation
Indices: 3114179--3114263 Score: 134
Period size: 41 Copynumber: 2.0 Consensus size: 41
3114169 ACGACTTTCC
* *
3114179 CCTCCAAATAGAGTCACCACGACTTTGGAAAGTAAATTGCT
1 CCTCCAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCT
*
3114220 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
1 CCTCCAAACAGAGGCACCACGAC-TTTGGAAAGTAAATTGCT
3114262 CC
1 CC
3114264 CTGACAATCA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
41 20 0.50
42 20 0.50
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.24
Consensus pattern (41 bp):
CCTCCAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCT
Found at i:3114569 original size:43 final size:42
Alignment explanation
Indices: 3114463--3114599 Score: 136
Period size: 43 Copynumber: 3.2 Consensus size: 42
3114453 TGAAAGATCC
** * *
3114463 TCATTTGAATTTTGGAGGCTCACATCCAAAAGTT-AAAGGTTCT
1 TCATTTGAATTTTGGA-ATTCACATCCAAAAATTCAAAGCTT-T
** *
3114506 T-ATTTGGCAAACTTGGAATTCATATCCAAAAA-TCTAAAGCTTT
1 TCATTT-G-AATTTTGGAATTCACATCCAAAAATTC-AAAGCTTT
3114549 TCATTTGAATTTTGGAAATTCACATCCAAAAATTCAAAGCTTT
1 TCATTTGAATTTTGG-AATTCACATCCAAAAATTCAAAGCTTT
3114592 TCATTTGA
1 TCATTTGA
3114600 GTTCAAAGGC
Statistics
Matches: 77, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
42 11 0.14
43 47 0.61
44 19 0.25
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.36
Consensus pattern (42 bp):
TCATTTGAATTTTGGAATTCACATCCAAAAATTCAAAGCTTT
Found at i:3114831 original size:22 final size:22
Alignment explanation
Indices: 3114783--3114841 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
3114773 GGTTTCACTC
3114783 CTCAAAGATTCTCATTTTGAAAT
1 CTCAAAGATTCTCA-TTTGAAAT
**
3114806 -TCAAAGATTCTCATTTGAGTT
1 CTCAAAGATTCTCATTTGAAAT
*
3114827 CTCAAAAATTCTCAT
1 CTCAAAGATTCTCAT
3114842 CAAAACATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.19
22 26 0.81
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.39
Consensus pattern (22 bp):
CTCAAAGATTCTCATTTGAAAT
Found at i:3115934 original size:19 final size:19
Alignment explanation
Indices: 3115908--3115955 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 19
3115898 TCAATTTGAA
3115908 TCTC-TTTTTTTC--ATTT
1 TCTCATTTTTTTCTTATTT
*
3115924 TCTCATTTTTTTCTTTTTT
1 TCTCATTTTTTTCTTATTT
3115943 TCTCATTTTTTTC
1 TCTCATTTTTTTC
3115956 CTTTTTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 4 0.14
17 8 0.29
19 16 0.57
ACGTcount: A:0.06, C:0.19, G:0.00, T:0.75
Consensus pattern (19 bp):
TCTCATTTTTTTCTTATTT
Found at i:3115937 original size:11 final size:11
Alignment explanation
Indices: 3115921--3115996 Score: 54
Period size: 11 Copynumber: 7.2 Consensus size: 11
3115911 CTTTTTTTCA
3115921 TTTTCTCA-TT
1 TTTTCTCATTT
3115931 TTTT-TC-TTT
1 TTTTCTCATTT
3115940 TTTTCTCATTT
1 TTTTCTCATTT
3115951 TTTTC-C-TTT
1 TTTTCTCATTT
* *
3115960 TTTTTTCATCATC
1 TTTTCTCAT--TT
* **
3115973 TTCTCTTTTTT
1 TTTTCTCATTT
3115984 TTTTCTCATTT
1 TTTTCTCATTT
3115995 TT
1 TT
3115997 CATCCATTGT
Statistics
Matches: 49, Mismatches: 10, Indels: 13
0.68 0.14 0.18
Matches are distributed among these distances:
9 15 0.31
10 8 0.16
11 20 0.41
13 6 0.12
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (11 bp):
TTTTCTCATTT
Found at i:3115959 original size:20 final size:19
Alignment explanation
Indices: 3115921--3115996 Score: 82
Period size: 19 Copynumber: 3.7 Consensus size: 19
3115911 CTTTTTTTCA
3115921 TTTTCTCATTTTTTTCTTT
1 TTTTCTCATTTTTTTCTTT
3115940 TTTTCTCATTTTTTTCCTTTTT
1 TTTTCTCATTTTTTT-C--TTT
3115962 TTTTCATCATCTTCTCTTT-TTT
1 TTTTC-TCAT-TT-T-TTTCTTT
3115984 TTTTCTCATTTTT
1 TTTTCTCATTTTT
3115997 CATCCATTGT
Statistics
Matches: 50, Mismatches: 0, Indels: 15
0.77 0.00 0.23
Matches are distributed among these distances:
18 1 0.02
19 16 0.32
20 3 0.06
21 4 0.08
22 16 0.32
23 4 0.08
24 2 0.04
25 1 0.02
26 3 0.06
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTTCTCATTTTTTTCTTT
Found at i:3119971 original size:57 final size:57
Alignment explanation
Indices: 3119909--3120365 Score: 587
Period size: 57 Copynumber: 7.8 Consensus size: 57
3119899 TCTTGTGTAG
* *
3119909 GGAAAATTGATAGTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTTAA
*
3119966 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTTAA
*
3120023 GGAAAATTGATACTTTCAACTTTTTCCC-AAAAATATTTTTTTGGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAAC-TTTTCCCTAAAAATATTTTTTT-GAAA-TTT-ATTTTTAA
*
3120083 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTTAA
* **
3120140 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCAAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTTG-AAATTTATTTTTAA
* *
3120199 GGAAAATTGGTACTTTCAACTTTT-CCTCAAAAATCCCCTTTTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAA------TATTTTTTTG-AAATTTATTTTTAA
* *** *
3120263 GGAAAATTGATACTTTCAACTTTTACCTAAAAATATTTTTCAAAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAA-TTT-ATTTTTAA
*
3120322 GGAAGATTGATACTTTCAACTTTTTCCC-AAAAATAGTTTTTTTG
1 GGAAAATTGATACTTTCAAC-TTTTCCCTAAAAATA-TTTTTTTG
3120366 GAACTTTTGA
Statistics
Matches: 354, Mismatches: 27, Indels: 35
0.85 0.06 0.08
Matches are distributed among these distances:
57 131 0.37
58 32 0.09
59 87 0.25
60 51 0.14
64 49 0.14
65 4 0.01
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.45
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTTAA
Found at i:3120114 original size:117 final size:115
Alignment explanation
Indices: 3119909--3120368 Score: 606
Period size: 117 Copynumber: 3.9 Consensus size: 115
3119899 TCTTGTGTAG
* **
3119909 GGAAAATTGATAGTTTCAAC-TTTTCCCTAAAAATATTTTTTTGAAA-TTTATTTTTTAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTTCCC-AAAAATATTTTTTTGAAATTTTATTTTCAAGGAAAA
3119972 TTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
65 TTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
3120023 GGAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTGGAAATTTTGATTTTCAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTT-GAAATTTT-ATTTTCAAGGAAA
3120088 ATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
64 ATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
* *
3120140 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTA-TTTCAAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTTCCCAAAAATA-TTTTTTTGAAATTTTATTTTC-AAGGAAA
* * *
3120204 ATTGGTACTTTCAACTTTT-CCTCAAAAATCCCCTTTTTTTTTTGAAAATTTATTTTTAA
64 ATTGATACTTTCAACTTTTCCCT-AAAAA-------TATTTTTTGGAAATTTATTTTTAA
* * *** *
3120263 GGAAAATTGATACTTTCAACTTTTACCTAAAAATATTTTTCAAAAATTTTGATTTTCAAGGAAGA
1 GGAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTGAAATTTT-ATTTTCAAGGAAAA
3120328 TTGATACTTTCAACTTTTTCCC-AAAAATAGTTTTTTTGGAA
65 TTGATACTTTCAAC-TTTTCCCTAAAAATA--TTTTTTGGAA
3120369 CTTTTGATTT
Statistics
Matches: 308, Mismatches: 18, Indels: 36
0.85 0.05 0.10
Matches are distributed among these distances:
114 33 0.11
115 18 0.06
116 35 0.11
117 104 0.34
118 16 0.05
122 11 0.04
123 81 0.26
124 8 0.03
125 2 0.01
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.45
Consensus pattern (115 bp):
GGAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTGAAATTTTATTTTCAAGGAAAAT
TGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
Found at i:3120409 original size:17 final size:17
Alignment explanation
Indices: 3120384--3120441 Score: 61
Period size: 16 Copynumber: 3.5 Consensus size: 17
3120374 GATTTTTATT
3120384 TAAAG-AAAATAGAATAA
1 TAAAGAAAAATAGAA-AA
3120401 TAAA-AAAAAGT-GAAAA
1 TAAAGAAAAA-TAGAAAA
*
3120417 TAAATAAAAATA-AAAA
1 TAAAGAAAAATAGAAAA
3120433 TAAAGAAAA
1 TAAAGAAAA
3120442 GTAAAACAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
16 19 0.53
17 16 0.44
18 1 0.03
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.16
Consensus pattern (17 bp):
TAAAGAAAAATAGAAAA
Found at i:3120418 original size:16 final size:15
Alignment explanation
Indices: 3120399--3120453 Score: 58
Period size: 16 Copynumber: 3.5 Consensus size: 15
3120389 AAAATAGAAT
3120399 AATAAAAAAAAGTGAA
1 AATAAAAAAAAGT-AA
3120415 AATAAATAAAAA-TAAA
1 AATAAA-AAAAAGT-AA
*
3120431 AATAAAGAAAAGTAA
1 AATAAAAAAAAGTAA
*
3120446 AACAAAAA
1 AATAAAAA
3120454 TAAAAATAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
15 12 0.36
16 16 0.48
17 5 0.15
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.13
Consensus pattern (15 bp):
AATAAAAAAAAGTAA
Found at i:3120431 original size:23 final size:24
Alignment explanation
Indices: 3120388--3120432 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
3120378 TTTATTTAAA
3120388 GAAAATAGAATAATAAAAAAAAGT
1 GAAAATAGAATAATAAAAAAAAGT
3120412 GAAAATA-AATAA-AAATAAAAA
1 GAAAATAGAATAATAAA-AAAAA
3120433 TAAAGAAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 3 0.15
23 10 0.50
24 7 0.35
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.16
Consensus pattern (24 bp):
GAAAATAGAATAATAAAAAAAAGT
Found at i:3120452 original size:27 final size:28
Alignment explanation
Indices: 3120422--3120475 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
3120412 GAAAATAAAT
3120422 AAAAATAAAAATAAAGA-AAAG-TAAAAC
1 AAAAATAAAAAT-AAGATAAAGATAAAAC
3120449 AAAAATAAAAATAAGATAAAGATAAAA
1 AAAAATAAAAATAAGATAAAGATAAAA
3120476 AATATTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 4 0.16
27 16 0.64
28 5 0.20
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.13
Consensus pattern (28 bp):
AAAAATAAAAATAAGATAAAGATAAAAC
Found at i:3120468 original size:32 final size:32
Alignment explanation
Indices: 3120389--3120470 Score: 94
Period size: 32 Copynumber: 2.5 Consensus size: 32
3120379 TTATTTAAAG
* * *
3120389 AAAATAGAATAATAAAAAAAAGTGAAAATAAATA
1 AAAATA-AA-AATAAAGAAAAGTAAAAAAAAATA
3120423 AAAATAAAAATAAAGAAAAGTAAAACAAAAATA
1 AAAATAAAAATAAAGAAAAGTAAAA-AAAAATA
*
3120456 AAAAT-AAGATAAAGA
1 AAAATAAAAATAAAGA
3120471 TAAAAAATAT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
32 24 0.56
33 13 0.30
34 6 0.14
ACGTcount: A:0.76, C:0.01, G:0.09, T:0.15
Consensus pattern (32 bp):
AAAATAAAAATAAAGAAAAGTAAAAAAAAATA
Found at i:3120505 original size:4 final size:4
Alignment explanation
Indices: 3120498--3120548 Score: 50
Period size: 4 Copynumber: 12.5 Consensus size: 4
3120488 AACCTAATCT
* * *
3120498 AATA AATA TAA-A AACA AATAA AATA AACA AATA AATA AACA AATA AATA
1 AATA AATA -AATA AATA AAT-A AATA AATA AATA AATA AATA AATA AATA
3120547 AA
1 AA
3120549 AAAAATTCAA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
3 2 0.05
4 31 0.79
5 6 0.15
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (4 bp):
AATA
Found at i:3120533 original size:12 final size:12
Alignment explanation
Indices: 3120509--3120548 Score: 71
Period size: 12 Copynumber: 3.2 Consensus size: 12
3120499 ATAAATATAA
3120509 AAACAAATAAAAT
1 AAACAAAT-AAAT
3120522 AAACAAATAAAT
1 AAACAAATAAAT
3120534 AAACAAATAAAT
1 AAACAAATAAAT
3120546 AAA
1 AAA
3120549 AAAAATTCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 19 0.70
13 8 0.30
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (12 bp):
AAACAAATAAAT
Found at i:3120554 original size:25 final size:25
Alignment explanation
Indices: 3120400--3120552 Score: 77
Period size: 25 Copynumber: 6.0 Consensus size: 25
3120390 AAATAGAATA
3120400 ATAAAAA-AAAGTGAAAATAAATAAAA-
1 ATAAAAACAAA-T-AAAATAAA-AAAAT
* * *
3120426 ATAAAAATAAAGAAAAGTAAAACAAAA
1 ATAAAAACAAATAAAA-TAAAA-AAAT
*
3120453 ATAAAAATAAGATAAAGAT-AAAAAAT
1 ATAAAAACAA-ATAAA-ATAAAAAAAT
* ** *
3120479 ATTAAATAA-AACCTAATCT-AATAAAT
1 A-TAAA-AACAA-ATAAAATAAAAAAAT
*
3120505 ATAAAAACAAATAAAATAAACAAAT
1 ATAAAAACAAATAAAATAAAAAAAT
3120530 A-AATAAACAAAT-AAATAAAAAAA
1 ATAA-AAACAAATAAAATAAAAAAA
3120553 ATTCAAAAAA
Statistics
Matches: 103, Mismatches: 13, Indels: 24
0.74 0.09 0.17
Matches are distributed among these distances:
24 18 0.17
25 26 0.25
26 26 0.25
27 25 0.24
28 7 0.07
29 1 0.01
ACGTcount: A:0.74, C:0.05, G:0.04, T:0.18
Consensus pattern (25 bp):
ATAAAAACAAATAAAATAAAAAAAT
Found at i:3121026 original size:31 final size:31
Alignment explanation
Indices: 3120968--3121038 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
3120958 ACTGGGCAAG
* ** * **
3120968 TCACCGAAAACTTCAAGGTTGGCCGAAATTT
1 TCACCGAAAAATTCAAACTTCGCCGAAAAAT
*
3120999 TCACCGAAAAATTCAAACTTCGTCGAAAAAT
1 TCACCGAAAAATTCAAACTTCGCCGAAAAAT
3121030 TCACCGAAA
1 TCACCGAAA
3121039 TCTGGAATTT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.39, C:0.24, G:0.14, T:0.23
Consensus pattern (31 bp):
TCACCGAAAAATTCAAACTTCGCCGAAAAAT
Found at i:3121436 original size:6 final size:6
Alignment explanation
Indices: 3121425--3121578 Score: 57
Period size: 6 Copynumber: 24.0 Consensus size: 6
3121415 TATAGAATAA
*
3121425 AAAAAT AAAAAT AAAAAT ATATAATT AAATAAAT AAAAAT ACAAAAT AAATAA-
1 AAAAAT AAAAAT AAAAAT A-A-AAAT -AA-AAAT AAAAAT A-AAAAT AAA-AAT
* * **
3121478 AATAAA- AAATAAT AAAAAAT ATATATT ATTAAT AATAAAT AAATAAT
1 AA-AAAT AAA-AAT -AAAAAT A-AAAAT AAAAAT AA-AAAT AAA-AAT
** * *
3121525 AAATACAT -AGGAT ATACAT -AAAAT ATAAAAT -AAAAT AAAAAT AAAAAT
1 AAA-A-AT AAAAAT AAAAAT AAAAAT A-AAAAT AAAAAT AAAAAT AAAAAT
3121573 AAAAAT
1 AAAAAT
3121579 GATAAAGATA
Statistics
Matches: 116, Mismatches: 15, Indels: 34
0.70 0.09 0.21
Matches are distributed among these distances:
5 11 0.09
6 53 0.46
7 38 0.33
8 13 0.11
9 1 0.01
ACGTcount: A:0.71, C:0.02, G:0.01, T:0.25
Consensus pattern (6 bp):
AAAAAT
Found at i:3121459 original size:4 final size:4
Alignment explanation
Indices: 3121420--3121529 Score: 58
Period size: 4 Copynumber: 29.0 Consensus size: 4
3121410 AATATTATAG
* * * *
3121420 AATA AAAA AATA AA-A ATAAA AATA TATA ATTA AATA AAT- AA-A AATA
1 AATA AATA AATA AATA A-ATA AATA AATA AATA AATA AATA AATA AATA
* * * *
3121466 CA-A AATA AATAA AATA AA-A AAT- AATA AA-A AATA TATA TTATT AAT-
1 AATA AATA AAT-A AATA AATA AATA AATA AATA AATA AATA -AATA AATA
3121511 AATA AATA AAT- AATA AATA
1 AATA AATA AATA AATA AATA
3121530 CATAGGATAT
Statistics
Matches: 82, Mismatches: 12, Indels: 24
0.69 0.10 0.20
Matches are distributed among these distances:
3 23 0.28
4 50 0.61
5 9 0.11
ACGTcount: A:0.73, C:0.01, G:0.00, T:0.26
Consensus pattern (4 bp):
AATA
Found at i:3121473 original size:17 final size:17
Alignment explanation
Indices: 3121425--3121495 Score: 69
Period size: 16 Copynumber: 4.3 Consensus size: 17
3121415 TATAGAATAA
3121425 AAAAAT-AAAAATAAA-
1 AAAAATAAAAAATAAAT
* *
3121440 AATATATAATTAAATAAAT
1 AA-AAATAA-AAAATAAAT
*
3121459 AAAAATACAAAATAAAT
1 AAAAATAAAAAATAAAT
3121476 -AAAATAAAAAAT-AAT
1 AAAAATAAAAAATAAAT
3121491 AAAAA
1 AAAAA
3121496 ATATATATTA
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
15 5 0.11
16 18 0.40
17 9 0.20
18 11 0.24
19 2 0.04
ACGTcount: A:0.77, C:0.01, G:0.00, T:0.21
Consensus pattern (17 bp):
AAAAATAAAAAATAAAT
Found at i:3121497 original size:22 final size:23
Alignment explanation
Indices: 3121424--3121498 Score: 70
Period size: 22 Copynumber: 3.3 Consensus size: 23
3121414 TTATAGAATA
*
3121424 AAAAAATAAAA-ATAAAAATATAT
1 AAAAAATAAAATA-AAAAATACAT
*
3121447 AATTAAAT-AAAT-AAAAATACA-
1 AA-AAAATAAAATAAAAAATACAT
3121468 AAATAAATAAAATAAAAAATA-AT
1 AAA-AAATAAAATAAAAAATACAT
3121491 AAAAAATA
1 AAAAAATA
3121499 TATATTATTA
Statistics
Matches: 43, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
21 6 0.14
22 18 0.42
23 15 0.35
24 4 0.09
ACGTcount: A:0.77, C:0.01, G:0.00, T:0.21
Consensus pattern (23 bp):
AAAAAATAAAATAAAAAATACAT
Found at i:3121500 original size:53 final size:53
Alignment explanation
Indices: 3121420--3121529 Score: 131
Period size: 53 Copynumber: 2.1 Consensus size: 53
3121410 AATATTATAG
3121420 AATAAAAAAATAAAAATAAAAATATATA-ATTAAATAAATAA-AAATACAA-AATA
1 AATAAAAAAATAAAAATAAAAATATATATATT--ATAAATAATAAATA-AATAATA
*
3121473 AATAAAATAAA-AAATAATAAAAA-ATATATATTATTAATAATAAATAAATAATA
1 AATAAAA-AAATAAA-AATAAAAATATATATATTATAAATAATAAATAAATAATA
3121526 AATA
1 AATA
3121530 CATAGGATAT
Statistics
Matches: 51, Mismatches: 1, Indels: 10
0.82 0.02 0.16
Matches are distributed among these distances:
52 9 0.18
53 28 0.55
54 14 0.27
ACGTcount: A:0.73, C:0.01, G:0.00, T:0.26
Consensus pattern (53 bp):
AATAAAAAAATAAAAATAAAAATATATATATTATAAATAATAAATAAATAATA
Found at i:3121565 original size:11 final size:11
Alignment explanation
Indices: 3121353--3121578 Score: 64
Period size: 12 Copynumber: 19.0 Consensus size: 11
3121343 TCAGCCCTCC
3121353 AAAATAAAAAT
1 AAAATAAAAAT
* *
3121364 CAAATAAATAAA
1 AAAATAAA-AAT
*
3121376 AAAATAATAGAT
1 AAAATAA-AAAT
* *
3121388 AATTAGAAAAGAT
1 AA-AATAAAA-AT
*
3121401 AATAAAAAAAAT
1 AA-AATAAAAAT
** *
3121413 ATTATAGAATAAA
1 AAAATA-AA-AAT
3121426 AAAATAAAAAT
1 AAAATAAAAAT
*
3121437 AAAAATATATAAT
1 -AAAATA-AAAAT
* *
3121450 TAAATAAATA-
1 AAAATAAAAAT
3121460 AAAATACAAAAT
1 AAAATA-AAAAT
*
3121472 -AAATAAAATAA
1 AAAATAAAA-AT
*
3121483 AAAATAATAA-
1 AAAATAAAAAT
* *
3121493 AAAATATATATT
1 AAAATA-AAAAT
*
3121505 ATTAATAATAAAT
1 A-AAATAA-AAAT
3121518 -AAATAATAAAT
1 AAAATAA-AAAT
* *
3121529 ACATAGGATATACAT
1 A-A-A--ATAAAAAT
3121544 AAAATATAAAAT
1 AAAATA-AAAAT
3121556 AAAATAAAAAT
1 AAAATAAAAAT
3121567 AAAAATAAAAAT
1 -AAAATAAAAAT
3121579 GATAAAGATA
Statistics
Matches: 158, Mismatches: 34, Indels: 45
0.67 0.14 0.19
Matches are distributed among these distances:
10 14 0.09
11 44 0.28
12 59 0.37
13 32 0.20
14 2 0.01
15 4 0.03
16 3 0.02
ACGTcount: A:0.71, C:0.02, G:0.03, T:0.24
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:3121589 original size:15 final size:13
Alignment explanation
Indices: 3121402--3121591 Score: 63
Period size: 14 Copynumber: 13.8 Consensus size: 13
3121392 AGAAAAGATA
3121402 ATAAAA-AAAATATT
1 ATAAAATAAAA-A-T
* *
3121416 ATAGAATAAAAAA
1 ATAAAATAAAAAT
3121429 ATAAAAATAAAAAT
1 AT-AAAATAAAAAT
*
3121443 ATATAATTAAATAA-
1 ATA-AAATAAA-AAT
3121457 ATAAAAATACAAAAT
1 AT-AAAATA-AAAAT
3121472 AAATAAAATAAAAA-
1 --ATAAAATAAAAAT
*
3121486 ATAATA-AAAAAT
1 ATAAAATAAAAAT
* * **
3121498 ATATATTATTAAT
1 ATAAAATAAAAAT
3121511 A-ATAAATAAATAAT
1 ATA-AAATAAA-AAT
* *
3121525 A-AATACATAGGATATAC
1 ATAA-A-ATA--A-AAAT
*
3121542 ATAAAATATAAA-
1 ATAAAATAAAAAT
3121554 ATAAAATAAAAAT
1 ATAAAATAAAAAT
3121567 A-AAAATAAAAAT
1 ATAAAATAAAAAT
3121579 GATAAAGATAAAA
1 -ATAAA-ATAAAA
3121592 TTGGACCTAT
Statistics
Matches: 132, Mismatches: 21, Indels: 45
0.67 0.11 0.23
Matches are distributed among these distances:
11 5 0.04
12 31 0.23
13 16 0.12
14 40 0.30
15 22 0.17
16 9 0.07
17 6 0.05
18 3 0.02
ACGTcount: A:0.71, C:0.02, G:0.03, T:0.25
Consensus pattern (13 bp):
ATAAAATAAAAAT
Found at i:3124398 original size:26 final size:26
Alignment explanation
Indices: 3124368--3124417 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
3124358 GACTTAGGCA
3124368 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
*
3124394 TACGGAGTTCATTCTCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
3124418 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:3128013 original size:893 final size:893
Alignment explanation
Indices: 3126462--3132270 Score: 6829
Period size: 877 Copynumber: 6.5 Consensus size: 893
3126452 GTTGACTTAG
* * * * * * * *
3126462 GCATACCGAGTTCATTCCCAGTCTAAGATCGGATCAGTCTGAGGGTTGCGACAGCAAAT-CTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGACCGAGGGTTGTGGCAGCACATGC-TGG
** * ** *
3126526 GCTCGACCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAG--CATCGTCGA
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACAT-GCCG-
* * *
3126589 AGAACCTGACCGACGGCATTGGGGTTTCGATGATTGGGGGGGCCGAGGGGGGTGTGCGCACACGA
127 -G-A---GACAGACGGCATTGGGGTTTCGA-GATCGGGGGGG-CG-GGGGGGTGTGCGCACATGA
*
3126654 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
184 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
3126719 TCACACCCCCTTATAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTG
249 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
3126784 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTT
314 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * *
3126849 TTTCTGCATGCCAAGAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAATGCCTTTCAA
379 TTTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAAT-CCTTCCGA
* * * * *
3126914 AAAAAGTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACAAGTCG
443 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
3126979 TCTTGCCATGAAACTTCACGTGAAGGCTCAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
508 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
3127044 GGCATTGTCACGCT-GTAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGAC
573 GGCATTGGCACG-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
3127108 TTGCACATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCTGCCCGCCCGTTCGTTTCGTCTG
637 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC-GCCCGCCCGTTCGTTTCGTCGG
* * * * ** *
3127173 TTGGCCTAGGCATACGGTGTTCATTCCCAGTCTAAGAGCAGACTGGATCGAGGGTTGTGGTAGCA
701 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCA
* * * * * * *
3127238 GGCTCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTATGGATCGCACCCCTCTGGTCG
766 AGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCG
* * * *
3127303 GTTGAGCGCCCGTAAGCTCGTTTCGTGGGTTGACTTAGGCATA-GAGAGTTCATTCCCAGTCTA
831 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG-GAGTTCATTCCCAGTCTA
** * *
3127366 GGCATA-GGAGTTCATTGTCGGTCTAAGATCAGACTGCACCAAGGGTTGTGGCAGCACATGCTGG
1 -GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTG-ACCGAGGGTTGTGGCAGCACATGCTGG
* *
3127430 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTC-ACTGGGGCACCATCGTCGGAGAACATG-CGG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGAACATGCCGG
* * *
3127493 -G-CATACGGCATTGGGGTTTCGACGATCGGGGGGGC-TGGGGGTGTGCGCACATGATGTGCAAT
128 AGACAGACGGCATTGGGGTTTCGA-GATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGAT
**
3127555 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTTTCAAACCTCGAGAACTCACACCC
192 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
3127620 CCTTAAAGAGCATTGGAGATTTTACAGGTTTGCTG-CAATAGCCATTAAAGTGTCTGAAATGGGG
257 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
3127684 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTTGCTGAATTTTTTTTTTGC
322 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGC
* * *
3127749 ATGCCAATAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGCCAAAATGCCTTCCGAAAAAATT
386 ATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAAT-CCTTCCGAAAAAATT
* * ** * * * *
3127814 TTAAAAAATCCCAAATCAAAAAAAGTTTTACAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCT
450 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* *
3127879 ATGAAACTTCACATGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
515 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
3127944 GCATGTAGAAATATGAAGATGTACC-AAATCCCACCTACCACTCTATCGATCCACGGCTTGCGCA
580 GCACGTAGAAATATGAAGATGTGCCTAAA-CCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
3128008 TCCCGTCTCTTTGGCCGGTGTAGTGCCCGCCCGCCCGTCCGCCCGTTTGCCCGCCCGTTTGTTTC
644 TCCCGTCTCTCTGGCCGGCGTAGT----GCCCG--C--CCG-CC----GCCCGCCCGTTCGTTTC
* ** * * * * *
3128073 GTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATTTGACCGAAACGATGGTTCCAG
696 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAG
* * * **
3128138 CAGCAAGATCGACAGCACGTAGAGGGGGACCCGATCGATCTTCAGCTTACGCATCCCGCCCCTCT
761 CAGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTACGCATCCCGCCCCTCT
* *
3128203 GGCCGGTTGAGCGCCCGCACGCTCATTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
826 GGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
3128268 CTAA
891 CT-A
* * *
3128272 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGACCGAGGGTTGTGGCAGCACATGCTGGG
* * * *
3128337 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAG--CATCACCGGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACAT-GCCGGA
* ** * *
3128400 GAACCTGACCGACGGCATTGGGGTTCCGGAGATCGGGGGCTCAGGGGGCGTGTGCGCACAAGATG
129 G-A-C--A--GACGGCATTGGGGTTTC-GAGATCGGGGGGGC-GGGGGGGTGTGCGCACATGATG
* * * * *
3128465 TACGATGGGTGTTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAACCCTCGAGGACTC
186 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
3128530 ACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCTAGTAGCCATTAAAGTGTCTGAA
251 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
3128595 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG-TCGAATTGTT
316 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-GAATTTTT
* *** *
3128659 TTGTGCATGCCAACAAAAATACAAGGATCATA-TCTACCATGTTCAAGGCCAAAAGTCCTTCTGA
380 TTGTGCATGCCAACAAAAATACAAGGATCA-AGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCGA
* * *
3128723 AAAAATTTTAAAAAATCCTGAATCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
443 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
3128788 TCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGAGCATTGTATGAATTTAAAAGCCATAAAAAT
508 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * * *
3128853 GACATTGGCATGCAGAAATATGAAGATGTCCCCAATCCCACCTACCACCCTATCGATCCACGGCT
573 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
3128918 TACGCATCCCGTCTCTCTGGTCGGCGTAGT----G--C-CCGCCCG--C--TCGTTTCGTCGGTT
638 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGTTCGTTTCGTCGGTT
* * ** *
3128972 GGCTTAGGCATACGGAGTTCATTCCTAGT-TGAAGATCAGA-TCAGAATGATGGTTGCAGCAGCA
703 GGCTTAGGCATACGGAGTTCATTCCCAGTCT-AAGATCAGACT-GGACCGAGGGTTGCAGCAGCA
* * * * * *
3129035 AGATCGGCAGCACGTAAAGGGGGACCCGATCGATCCCTAGCTTGCACATCCCGCCCCTCTGGCCG
766 AGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCG
3129100 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTGAG
831 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGAC-T-----T----AG----------G-C--A-
3129165 CGTACGGAGTTCATTCCCAGTCTGA
872 --TACGGAGTTCATTCCCAGTCT-A
* *
3129190 GCGTACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGACCGAGGGTTGTGGCAGCACATGCTGGG
* *
3129255 CTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATTGTCGGAG--CATCGCCGGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACAT-GCCGGA
* **
3129318 GAACCTGACCGACGGCATTGGGGTTCCGGAGATCGGGGGCTCGGGGGGCGTGTGCGCACATGATG
129 G-A-C--A--GACGGCATTGGGGTTTC-GAGATCGGGGGGGCGGGGGG-GTGTGCGCACATGATG
* * * * * * *
3129383 TGTGGTGGGTGTTGGGACGTGGCCCTCATATTGGCCCCCTATCCCTCATCAACCCTCGAGAACTC
186 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
3129448 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
251 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
3129513 ATGGGGATACTTTTTTCAAAAGGCCACAAAATCTTGTACACTTCAAGTTTTTAGTTGAATTTTTT
316 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
3129578 TGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAA-TTTGGGCCCAAAACTCCTTTCGAAA
381 TGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCGAAA
* *
3129642 AAATTTTAAGAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATC
445 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
3129707 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGGATGAATTTACAAGCCATAAAAATGG
510 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** *
3129772 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACTCGTCTACCACCCTATCGATCCACGACTTG
575 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
3129837 CGCATCCCGTCTCTCTGGCCGACGTAATGCCCG--C-CCGCCCGCCCGTTCGCTTCGTTGGTTGG
640 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGTTCGTTTCGTCGGTTGG
* * *
3129899 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-AATCAGACCGAGGGTTGTAGCAGCAAGA
705 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCAGCAGCAAGA
* * ** ** * *
3129963 TCGGTAGCACGCAGAGGGGGACTCTTCTTATCCCC-GAATTACGCATCCTGCCCCTCTGGCCGGC
769 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAG-CTTACGCATCCCGCCCCTCTGGCCGGC
* * * * * *
3130027 TGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGACATACGGAGTTAATTCCTAGTCTTA
833 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC-TA
* ** *
3130089 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAAAAGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTG-ACCGAGGGTTGTGGCAGCACATGCTGGG
* ** * *
3130154 CTCGAGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATTGTCGGAGAACCTGACC---
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACATG-CCGGA
* * *
3130216 GAC--A--GCATTAGGGTTTCGACGATCGGGGGGGCCGGGGGCTGTGCGCACATGATGTGCGATG
129 GACAGACGGCATTGGGGTTTCGA-GATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATG
* * * *
3130277 GGTGCTGGTACTTAGCCCTTATATTGG-CCCGTATCCCTCATCAAATCTCAAGAACTCACACCCC
193 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
3130341 CTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
258 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
** *
3130406 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCCAAATTGTTTTGTGCAT
323 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
3130471 GCCAACAAAATTACAAGGATCGTA-TCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTT
388 GCCAACAAAAATACAAGGATC-AAGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCGAAAAAATTT
* * * * *
3130535 TAAAAAATCTCGAATCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGTGTCGTCTTGCCA
451 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
3130600 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGGATGAATTTATAAACCATAAAAATGGCATTGG
516 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
3130665 CACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
581 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * * * *
3130730 CCGCCTTTCTGGCTGGCATAGTGCCCGCTCGTCCGCCCGCCCGCTCATTTTGTCGGTTGGCTTAG
646 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAG
* ** * * * * *
3130795 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACTAGACTGAGGGTTGCGGTAGCAGGATCGGCA
710 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCAAGATCGGCA
* * * * * * *
3130860 GCACACCGAGGGGGACCCGATCGATCCCCCGCTTGCGCATCCCGCCCCTCTTG-CGGCTGAGCAC
775 GCACGCAGAGGGGGACCCGACCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
3130924 TCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T-
840 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * *
3130975 -C-TA---AG---------A-TC--AGA-C---CAGACCGAGGGTTGCGACAGCACATGCTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGACCGAGGGTTGTGGCAGCACATGCTGGGC
* * *
3131019 TCGGGCATGTGCTAGTGTCGTATTTTTCTTCGTCGGGGCACCATCG-CTGGAG--CATTGCCGGA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGAACA-TGCCGGA
* * * *
3131081 GAACCTGACTGGCAGCATTGGGGTTCTGGAGATCGGGAGGGTCGGGGGGGTGTCCGCACATGATG
129 G-A-CAGAC--G--GCATTGGGGTT-TCGAGATCGGG-GGGGCGGGGGGGTGTGCGCACATGATG
* *
3131146 TGCGATGGGTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AACCTTCAAGAACT
186 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACT
3131210 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-A
250 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * * *
3131274 AAGTAGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTTGAGTTTTTAGTTGAATTTG
315 AA-TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * *
3131339 TTTGTGGATACCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGACCAAAAATCCTTCTGA
379 TTTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCC-AAAATCCTTCCGA
* *
3131404 AAAAATTTTAAAAAATTCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
443 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
3131469 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAAT
508 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
3131534 GGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACAGCT
573 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *** * *
3131599 TGCGCATCCCGTTTTTCTGGCCGGCGTAGTGCCCGTCCGCCCGTTTGCCCGCTCGTTTCATCGGT
638 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCCGTTCGTTTCGTCGGT
* * ** *
3131664 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTGTGGCAGCAG
702 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCAA
* * * * * * *
3131729 GATCGACAGCACGCAGAGAGGGACCTGACCGATACCC-GAATTGCGCATCCCACCCCTCTGGCCG
767 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAG-CTTACGCATCCCGCCCCTCTGGCCG
* * * *
3131793 GCTGAGCGCCCGCGCGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
831 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-A
* * * * * * * *
3131857 GAATACGAAGTTAATTCCCAGTCTAAGATCAAACTAGTCCGAGGGTTATCGCAGCACATGCTGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GACCGAGGGTTGTGGCAGCACATGCTGGG
* * * * ** * *
3131922 TTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGAGGCACCATCACCGGCG-A-A--CC-TA-
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACATGCCGGAG
* * * *
3131981 ACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
130 ACAGACGGCATTGGGGTTTCGA-GATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGG
* * * *
3132046 GTGCCGGT-GTATGGCCCTTATATTCGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCC
194 GTGCTGGTACT-TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
3132110 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
258 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
3132175 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAA
323 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * *
3132240 ACAAAAAAAAATACAAGGATCATGACTACCA
388 GCCAACAAAAATACAAGGATCAAGTCTACCA
3132271 TATCGATCCA
Statistics
Matches: 4259, Mismatches: 490, Indels: 323
0.84 0.10 0.06
Matches are distributed among these distances:
862 3 0.00
863 3 0.00
864 69 0.02
865 3 0.00
866 1 0.00
867 1 0.00
868 1 0.00
869 4 0.00
871 2 0.00
872 1 0.00
875 17 0.00
876 66 0.02
877 530 0.12
878 58 0.01
880 1 0.00
881 2 0.00
884 4 0.00
885 1 0.00
886 182 0.04
887 278 0.07
888 26 0.01
889 1 0.00
890 54 0.01
891 121 0.03
892 471 0.11
893 402 0.09
894 1 0.00
895 2 0.00
896 36 0.01
897 13 0.00
898 5 0.00
899 130 0.03
900 6 0.00
901 9 0.00
902 7 0.00
903 4 0.00
904 158 0.04
905 194 0.05
906 104 0.02
907 4 0.00
908 1 0.00
910 1 0.00
912 2 0.00
913 1 0.00
914 25 0.01
915 5 0.00
916 373 0.09
917 303 0.07
918 411 0.10
919 2 0.00
921 9 0.00
923 1 0.00
924 3 0.00
925 146 0.03
926 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGACCGAGGGTTGTGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACATGCCGGAGA
CAGACGGCATTGGGGTTTCGAGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAATCCTTCCGAAAAAATTTTAAAA
AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCAAGATCGGCAGCACGC
AGAGGGGGACCCGACCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
Found at i:3128282 original size:26 final size:26
Alignment explanation
Indices: 3128246--3128298 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3128236 GTTGACTTAG
3128246 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3128272 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3128298 G
1 G
3128299 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3129181 original size:26 final size:26
Alignment explanation
Indices: 3129145--3129213 Score: 138
Period size: 26 Copynumber: 2.7 Consensus size: 26
3129135 TAGGCATACA
3129145 GAGTTCATTCCCAGTCTGAGCGTACG
1 GAGTTCATTCCCAGTCTGAGCGTACG
3129171 GAGTTCATTCCCAGTCTGAGCGTACG
1 GAGTTCATTCCCAGTCTGAGCGTACG
3129197 GAGTTCATTCCCAGTCT
1 GAGTTCATTCCCAGTCT
3129214 AAGATCAGAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.19, C:0.28, G:0.25, T:0.29
Consensus pattern (26 bp):
GAGTTCATTCCCAGTCTGAGCGTACG
Found at i:3130095 original size:26 final size:27
Alignment explanation
Indices: 3130058--3130112 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
3130048 CATGGGTTGA
*
3130058 CTTAGACATACGGAGTTAATTCCTAGT
1 CTTAGACATACGGAGTTAATTCCCAGT
*
3130085 CTTAG-CATACGGAGTTCATTCCCAGT
1 CTTAGACATACGGAGTTAATTCCCAGT
3130111 CT
1 CT
3130113 AAGATCAGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (27 bp):
CTTAGACATACGGAGTTAATTCCCAGT
Found at i:3132442 original size:26 final size:26
Alignment explanation
Indices: 3132402--3132474 Score: 119
Period size: 26 Copynumber: 2.8 Consensus size: 26
3132392 TGACTTAGGA
3132402 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
* *
3132428 ATATGGAGTTCATTCCCAATCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
*
3132454 ATACAGAGTTCATTCCCAGTC
1 ATACGGAGTTCATTCCCAGTC
3132475 AAAGATCAGA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:3134245 original size:26 final size:25
Alignment explanation
Indices: 3134209--3134311 Score: 143
Period size: 26 Copynumber: 4.0 Consensus size: 25
3134199 GTTGAGTTAG
3134209 GCATACGGAGTTCATTCCCAGTCTCA
1 GCATACGGAGTTCATTCCCAGTCT-A
* *
3134235 GCATACGGAGTTCATTTCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCT-A
*
3134261 GCATACGGAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATTCCCAGTCTA
*
3134286 GGCATATGGAGTTCATTCCCAGTCTA
1 -GCATACGGAGTTCATTCCCAGTCTA
3134312 AGATCGGACT
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
25 1 0.01
26 67 0.99
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.30
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCAGTCTA
Found at i:3134291 original size:52 final size:52
Alignment explanation
Indices: 3134209--3134313 Score: 158
Period size: 52 Copynumber: 2.0 Consensus size: 52
3134199 GTTGAGTTAG
* * *
3134209 GCATACGGAGTTCATTCCCAGTCTCAGCATACGGAGTTCATTTCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTCAGCATACGGAGTTCATTCCCAGTCTAA
*
3134261 GCATACGGAGTTCATTCCCAATCT-AGGCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTCA-GCATACGGAGTTCATTCCCAGTCTAA
3134313 G
1 G
3134314 ATCGGACTAG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
51 1 0.02
52 47 0.98
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (52 bp):
GCATACGGAGTTCATTCCCAATCTCAGCATACGGAGTTCATTCCCAGTCTAA
Found at i:3135188 original size:26 final size:26
Alignment explanation
Indices: 3135151--3135203 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3135141 GTTGACTTAG
* *
3135151 GCATACGGAGTTCATTCTCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
3135177 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
3135203 G
1 G
3135204 ATCAGATTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:3136085 original size:26 final size:26
Alignment explanation
Indices: 3136055--3136107 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3136045 GTTGACTTGG
3136055 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
3136081 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3136107 G
1 G
3136108 ATCGAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Done.