Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 23 of 129
Found at i:3136493 original size:905 final size:900
Alignment explanation
Indices: 3134261--3138624 Score: 5870
Period size: 905 Copynumber: 4.9 Consensus size: 900
3134251 TCTAGTCTAA
* *
3134261 GCATACGGAGTTCATTCCCAATCTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGA-CTAGA
1 GCATACGGAGTTCATTCCCAATCTAAGCATA-GGAGTTCATTCCCAGTCTAAGATCGAATC-AGA
* * *
3134325 CCGAGGGTTGCAGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCATCGGG
64 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGG
*
3134390 G------CA-C----CATCGTCGGAGAACCCGACCGGTGGCATTGGGGTTCCGACGATCGGGGGG
129 GCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGG
* *
3134444 GCCAGGGGGTGTGCGCACATGATGTGCGATGAGTGCTGGTACTTGGCCTTTATATTGGCCCCCTA
194 GCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
3134509 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATGTGAGATTTTACAGGTTTTCTA
259 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
3134574 TCAGTAGCCATTAAAGTGTCTAAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACAC
324 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
***
3134639 TTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATTGTATCTACCAAGT
389 TTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGT
** *
3134704 TCAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCACGAACCGTAAAAAGTTTCAAAAATC
453 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* *
3134769 GTTAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
518 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * * *
3134834 TGAATTTACAAGCCATAAAAACGGCATTAGCATGCAGAAATATGAAGATGTGCCAAAACCCACCT
583 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* *
3134899 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CTAGCGTAGTGCCCGCCCACCC
648 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCC
* * * * * * *
3134963 GCCCGCTGCTCATTTTATCGGTTGGCTTAGGTATACGGAGTTGATTCCCAGTCTAAGATCAGACC
712 GCCCCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * *
3135028 -GAACCGAGGCTTACGGTAGTAGGATCGGTAGGACGCA-AAAAGGACCC-GATCGATCCCTGGCT
777 AG-ACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGAAGGACCCAG-TCGATCCCTGGCT
* * * * *
3135090 TGCTCATCCCGCCCCTCTGTCCGGCTGAGCGCCCGCACGCTTATTTAATGGGTTGACTTAG
840 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAG
* * * *
3135151 GCATACGGAGTTCATTCTCAATCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATTGA-A
1 GCATACGGAGTTCATTCCCAATCTAAGCATA-GGAGTTCATTCCCAGTCTAAGATC-GAATCAGA
* * *
3135215 CCGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGG
64 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGG
* * * *
3135280 GCACCACCACCAGAGCATCGTCGGAGAACCTGATCGGTGGCATTGGTGTTCCGACGATCGGGGGG
129 GCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGG
*
3135345 GCCGAGGGGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCC
194 GCC-AGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * *
3135410 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTATACAGGTTTGC
257 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
3135475 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
322 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
*
3135540 ACTTCAAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAG
387 ACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAG
* * *
3135605 TTTGGGGCCAAAACTGCTTCCGAAAAAATTTTAAAAAATCCCGAATCGCAAAAAGTTTCAAAAAT
452 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * *
3135670 CATGAAAAATAGAAAACGAGTCGTCATGCCATGAAACTTCACGTGAAGGCTTAAGGGACCTTTGT
517 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * *
3135735 ATGAATTTACAAGCCATAAAAATGGCATTGGTACGTAGAAATATGAAGATGTGCCCAAACGCACC
582 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
3135800 TATCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGATGTAGTGCTCGCCCGCCC
647 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
* *
3135865 GCCCACCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGAC
712 GCCC-CCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * *
3135930 CAGACTGAGGGTTGCGATAGCAGGATCGGCAGCACGTAGAGAAGGACCCAGTCGATCCCTGGCTT
776 CAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGAAGGACCCAGTCGATCCCTGGCTT
** * * * * * *
3135995 ATGCACCCCGCCCCTCTGGCTGGCTGAGCACCCACACGCTCGTTTCATGTGTTGACTTGG
841 GCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAG
* *
3136055 GCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGAC
1 GCATACGGAGTTCATTCCCAATCTAAGCATA-GGAGTTCATTCCCAGTCTAAGATCGAATCAGAC
* * * * *
3136120 TGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTACC-TCATTTTTCTTCGTCGGG
65 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAT-ATTTTTCTTCGTCGGG
* * *
3136184 GCACCATCACCGGAGGATCGTCGGAGAACCTGACAGGTGGCATTGGGGTTCTGACGATCGGGGGG
129 GCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGG
*
3136249 GCCGGAGGGTGGGGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
194 GCC--AGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
3136314 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTG
256 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
3136379 TTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
321 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
3136444 CACTTCGAGTTTTTAGCAGAATTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACGAA
386 CACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAA
* * **
3136509 GTTTGGGGCCAAAACTGCTTTCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAA
451 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* * * * *
3136574 TCGTGAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCATGTAAAGGTTTAAGGGACCATTG
516 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * ** *
3136639 TATGAATTTACAGGCCATAAAAATGGCATTGGCTCATAGAAATATGAAGATGTGCCTAAACCCAG
581 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * *
3136704 CTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGAAGTACTGCCCGCCCACC
646 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * *
3136769 CGCCCGCCCGCTCGTTTCATCAGTTGGCTTGGGCATACGGAGTTCATTCCCAGTCTAGGATTAGA
711 CGCCC-CCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * ** *
3136834 CCAGACCAAGCGGTTTCTGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCTGG
775 CCAGACCGAG-GGTTGC-GGTAGCAGGATCGGCAGCACGCAGAGAAGGACCCAGTCGATCCCTGG
* * **
3136899 CTTGCGCATCCCGCCCCTCTGGCTGGTTGAGCATTCGCACGCTCATTTCATGGGTTGACTTAG
838 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAG
* * * *
3136962 GCATACGGAGTTCATTCCCAGTCTAAGCATAGGTAGTTCTTTCCCAGTCGAAGATCGGATCAGAC
1 GCATACGGAGTTCATTCCCAATCTAAGCATAGG-AGTTCATTCCCAGTCTAAGATCGAATCAGAC
* * * * *
3137027 CGAGGGTTGCGGCAGCACATGCTGGGGTTGGGCATGTGCTGGTACCATATTTTTCTTTGCCGGGG
65 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGG
* ** * ** ** * * *
3137092 CACCATCACAGGAGCATCACCGAAGAACCTGACCGACGGCATTGACGTTTCGACAATCGAGGGGG
130 CACCATCACCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGG
* ** * * *
3137157 CCAGGGCAGTGTGTACACATGATATGCGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCTTA
195 CCAGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
** * *
3137222 TCATTCATCAAACCTC-AGGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCT
259 TCCCTCATCAAACCTCGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
3137286 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
323 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
3137351 CTT-GAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
388 CTTCG-AGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAA
3137415 GTTTTGGGGCCAAAACTCCTTCCG-AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
451 G-TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
* * *
3137479 ATCATGAATAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
515 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * *
3137544 GTATGAATTTACAAGCCATAAAAATGGAATTGGCACACAAAAATATGAAGATGTGCCTAAACCCA
580 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
* * * ** *
3137609 CCTACCACCCTATCGATCCACAGCTTGCGCATCCCATGTCTCTGGCCGGTGTGGTGCCCGCCCGC
645 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
* * * *
3137674 ACGCCCGCCCGCTTGTTTCATCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGG
710 CCGCCC-CCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * ** ** * **
3137739 ACCAGACTGAGGGTTAG-GGTAGTAGGATCGGAAGAACATAGAGGGGGACCCATTCGATCCCCAG
774 ACCAGACCGAGGGTT-GCGGTAGCAGGATCGGCAGCACGCAGAGAAGGACCCAGTCGATCCCTGG
* * * * * *
3137803 CTCGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGTACGCTCGTTTCGTGGGTTGAC-T--
838 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAG
*
3137863 ---TA--G-G--------C-A--T--GC--A-GAGTTCATTCCCAGTCTAAGATCCGACT-AGAC
1 GCATACGGAGTTCATTCCCAATCTAAGCATAGGAGTTCATTCCCAGTCTAAGAT-CGAATCAGAC
* **
3137905 TGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
65 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGG
* * * *
3137970 CACCATCACCGGAGCATCGCCGGAGAACCTAACCGGTGGAATTGGGGTTCCGAAGATC-GGGGGG
130 CACCATCACCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGG
*
3138034 CCAGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
195 CCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
3138099 CCCGCATCAAACCTCGATAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
260 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
3138163 TAGTAGCCATTAAAGTGTCTGAAAGGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
325 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * **
3138228 TTGAGTTTTTAGCTAAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCCAATAAGTT
390 TCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTT
* * * **
3138293 TGGGCCCAAAACTCCTTTC-AAAAAAATTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCG
454 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
* * * * *
3138357 TGAAAAATAGAAAACGAGTCCTCTTACCATGAAACTTGACGTGAAGGCTCAAGGGACCATTCTAT
519 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
3138422 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTA
584 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
3138487 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTTTGGCCGACGCAAT----GCCCGTCCG-
649 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC
* * * ** * *
3138547 CCCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTTTTCCCAGTCTAAGATCGGACCGG
714 CCCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
*
3138612 ACCAAGGGTTGCG
779 ACCGAGGGTTGCG
3138625 ACAGTGAATG
Statistics
Matches: 3082, Mismatches: 353, Indels: 100
0.87 0.10 0.03
Matches are distributed among these distances:
867 1 0.00
868 64 0.02
869 2 0.00
870 7 0.00
874 221 0.07
875 154 0.05
876 73 0.02
877 12 0.00
878 126 0.04
879 4 0.00
880 1 0.00
882 2 0.00
884 1 0.00
887 1 0.00
890 115 0.04
891 2 0.00
895 1 0.00
896 3 0.00
897 1 0.00
898 2 0.00
901 50 0.02
902 283 0.09
903 279 0.09
904 329 0.11
905 739 0.24
906 328 0.11
907 280 0.09
908 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAATCTAAGCATAGGAGTTCATTCCCAGTCTAAGATCGAATCAGACC
GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGC
ACCATCACCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGC
CAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTG
GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCC
CCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
CGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGAAGGACCCAGTCGATCCCTGGCTTGCGCA
TCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAG
Found at i:3139546 original size:26 final size:26
Alignment explanation
Indices: 3139510--3139560 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
3139500 GTTGACTTAG
3139510 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3139536 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
3139561 TGATTGGATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3140140 original size:903 final size:880
Alignment explanation
Indices: 3138748--3144627 Score: 6381
Period size: 903 Copynumber: 6.6 Consensus size: 880
3138738 GCACCATTGT
* * ** * * **
3138748 CGGAGCATCATCAGAGAACCTGATCGACGGCTTTGGGGTTTC-AGCGATCG-GGGGGTCATGGG-
1 CGGAGCATCGTCAGAGAACCTGACCGACGGAATTGGGGTTCCGA-CGATCGAGGGGGCCGGGGGA
*
3138810 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA-TTGGCCCCCTATCCCCCAT
65 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTGGCCCCCTATCCCTCAT
* *
3138874 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAATAGC
130 CAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
3138939 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTT
194 CATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* **
3139004 TTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTCCGGGCC
258 TTTAGCTGAATTTTTTTGTGCATGCCAA-CAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
*** * *
3139069 AAAACGGCTTTCGAAAAAATTTTAAAAGATCCCAAACCGAAAAAAGTTTCAAAAATCGTGAAAAA
322 AAAAATCCTTTC-AAAAAATTTTAAAAAATCCCGAACC-AAAAAAGTTTCAAAAATCGTGAAAAA
* *
3139134 TAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTA
385 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * *
3139199 CAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCCAAACCAACCTACCATCCT
450 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* **
3139264 ATCGATCCATGACTTGCGCATCCCGTCTCTCTGGTTGACGTAGTGCCCGCCCACCCCCCCGCCCG
515 ATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCCCCCGCCCG
*
3139329 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACAGGAATGAG
580 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACAGGAATGAG
*
3139394 GGCTACGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCC
645 GGCTACGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCC
3139459 GCCCCTCTGGCAGGCTGTGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
710 GCCCCTCTGGCAGGCTGTGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
3139524 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTATGATTGGATCGGACCTAGGGTTACGGCA
775 TTCCCAGTCTAAG-AT-C-GAG---A----CA--C--T-A---GA-CGGACCTAGGGTTACGGCA
* *
3139589 GCACATGCTGGGC-CAGGGCCATGTGCTGGTGCCACATTTTTCCTCCGCCGGGGCACCATCAC
821 GCACATGCTGGGCTC-GGG-CATGTGCTGGTGCCGCATTTTT-CTTCGCCGGGGCACCATCAC
* * * *
3139651 CGGGAGCATCGTCGGAGAACCTGGACCGGCGGAATTGCGGTTCCGACGATCGAGGGGTCC-GGGG
1 C-GGAGCATCGTCAGAGAACCT-GACCGACGGAATTGGGGTTCCGACGATCGAGGGGGCCGGGGG
* **
3139715 ATGT-TGCACATGATGTAGCGATGGGTGCTGGCCCTTGGCCCTTATATTTGGCCCCCTATCCCTC
64 ATGTGCGCACATGATGT-GCGATGGGTGCTGGTACTTGGCCCTTATATTTGGCCCCCTATCCCTC
* * *
3139779 ATCAAACCTCGAGAACTCCACACCCTCATAAAGAGCATTTGATATTTTACAAGTTTGCTGGCCAG
128 ATCAAACCTCGAGAACT-CACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAG
* *
3139844 TAGCCATGTAATGTGTCTAAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
190 TAGCCAT-TAAAGTGTCTGAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
3139909 AG-TTTTAGCTGAA-TTTTTTGTGCATGCCCAACAAAATACAAGGATCACGTCTACCAAGTTTGG
254 AGTTTTTAGCTGAATTTTTTTGTGCATG-CCAACAAAATACAAGGATCACGTCTACCAAGTTT-G
* * *
3139972 GGGCAAAAAATCCTTTC-AAAAA-TTTAAAAAATCCCGAACCATAAAAG-TTCAAAAATCGTGAG
317 GGGCCAAAAATCCTTTCAAAAAATTTTAAAAAATCCCGAACCAAAAAAGTTTCAAAAATCGTGAA
* * *
3140034 AAATAGAAAACGAGTCCG-CATGCCATGAAACTTCACATGAAGGCTTAAGGGACCTTTGTATGAA
382 AAATAGAAAACGAGT-CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
** *
3140098 TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTATCA
446 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * ** *
3140163 TCCTATCGATCCACGGCTTGCGCATCCCTTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCA
511 CCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCCCCCG
*
3140228 TCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACAGGAA
576 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACAGGAA
* * * *
3140293 TGAGGGCTACGGCAGCAGGATCGATAGCACACAGAGGGGGACCCGATCGATCCCTGGCTTGTGCA
641 TGAGGGCTACGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCA
*
3140358 TCCCGCCCCTCGGGCAGGCTGTGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAG
706 TCCCGCCCCTCTGGCAGGCTGTGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAG
3140423 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTATGATTGGATCGGACCTAGGGTTAC
771 TTCATTCCCAGTCTAAG-AT-C-GAG---A----CA--C--T-A---GA-CGGACCTAGGGTTAC
* * *
3140488 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCAGCATCAC
817 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCAC
* *
3140552 CGGAGCATCGTCGGAGAACCTGACCGACGGAATTGGGGTTCCGACGATCGAGGGGGTCGGGGGAT
1 CGGAGCATCGTCAGAGAACCTGACCGACGGAATTGGGGTTCCGACGATCGAGGGGGCCGGGGGAT
** **
3140617 GTTTGCACATGATGTGCGATGGGTGCTGGCCCTTGGCCCTTATA-TTGGCCCCCTATCCCTCATC
66 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTGGCCCCCTATCCCTCATC
* *
3140681 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAATAGCC
131 AAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
3140746 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTT
195 ATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* **
3140811 TTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTCCGGGCCA
259 TTAGCTGAATTTTTTTGTGCATGCCAA-CAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
*** * * *
3140876 AAACGGCTTTCGAAAAAATTTTAAAAGATCCCAAACCGAAAAATGTTTCAAAAATCGTGAAAAAT
323 AAAATCCTTTC-AAAAAATTTTAAAAAATCCCGAACC-AAAAAAGTTTCAAAAATCGTGAAAAAT
*
3140941 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTAC
386 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * * *
3141006 AAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTCCCCAAACCAACCTACCATCCTA
451 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* ** *
3141071 TCGATCCATGACTTGCGCATCCCGTCTCTCTGGTTGACGTAGTGCCCGCCCACCCCGCCGCCCGC
516 TCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCCCCCGCCCGC
*
3141136 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACAGGAATGAGG
581 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACAGGAATGAGG
*
3141201 GCTACGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCCG
646 GCTACGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCCG
3141266 CCCCTCTGGCAGGCTGTGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
711 CCCCTCTGGCAGGCTGTGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * *
3141331 TCCCAGTCTAAGCATACGGAGTTCATTTCCAATCTAAGATTGAACTGGA-TTGAGGGTTGCGGTA
776 TCCCAGTCTAAG-AT-C-GAG---A----C-A-CT---A--G-AC-GGACCT-AGGGTTACGGCA
* *
3141395 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGC
821 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCAC
* * *
3141455 CGGAGCATC-TCAGAGAACTTGACCAAC-GACATTGGGGTTTCGAAC-ATCGAGGGGGCCGGGGG
1 CGGAGCATCGTCAGAGAACCTGACCGACGGA-ATTGGGGTTCCG-ACGATCGAGGGGGCCGGGGG
* *
3141517 GTGTGCGCACATGATGTGGGATGGGTGCTGGTACTTGG--C-------T-G-------T---T-A
64 ATGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTGGCCCCCTATCCCTCA
*
3141561 TCAAACCTCAAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
129 TCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
** * *
3141626 CCATTAAAGTGTCTGAAATGGGGGTACTTTGTTCAAATGGTCACAAAATCTTGTACACTTTGTGT
193 CCATTAAAGTGTCTGAAATGGGGACACTTT-TTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * * *
3141691 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCATGTCTACTAAGATTGGGC
257 TTTTAGCTGAATTTTTTTGTGCATGCC--AACAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * *
3141756 CCAAAACA-CTTTTCAAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTT-AGAAAATCATGA
320 CCAAAA-ATCCTTTC-AAAAAATTTTAAAAAATCCCGAACCA-AAAAAGTTTCA-AAAATCGTGA
* * *
3141819 AAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
381 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * *
3141884 TTTACAGGCCATAAAAATGGCATTGGCATGTAG-AA-AT----ATGTGCCTAATCCCATCTACCA
446 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
*
3141943 CCCTATCGATCAATGGCTTGCGCATCCCGTCTATCTCTGGCCG-CGTAGTGCCCGCCCACCCGCC
511 CCCTATCGATCCATGGCTTGCGCATCCCGTC--TCTCTGGCCGACGTAGTGCCCGCCCA------
* * *
3142007 CGCCCTCCCGCCCGCCTACTCGATTCGTCGGTTGGCTTAGGCATACGAATTTCATTCCCAGTCTA
568 C-CCC-CCCGCCCG----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
** * * * * *
3142072 AGATGGGAC-TGAACTGAGGGTTACAGCAGCAGGATC-AGCCGCACGTAGAGGGGG-CCC---C-
627 AGATTAGACAGGAA-TGAGGGCTACGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGGTCG
* * * * * *
3142130 -T--CCGG-TCG-GC-T---G-------AGC--GCTAT-------TACGCTCGTTTCGTGGGCTG
690 ATCCCCGGCTTGTGCATCCCGCCCCTCTGGCAGGCTGTGCGCCCGCACGCTCATTTCGTGGGTTG
* * *
3142170 ACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC-AG--ACTAGACCGAGC-A---TTACGGC
755 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACACTAGACGGACCTAGGGTTACGGC
* ** * * *
3142228 AGCACATGCTGGGCTTGGGCATGTGCTCATGCCGTATTTTTCTTTGCCGAGGCACCATCAC
820 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCAC
* * ** *
3142289 CGGAGCATCGTC-GAAGAACCTGACCGACAGCATCAGGGTTCCGGCGATC-AGGGGGCCGGGGGA
1 CGGAGCATCGTCAG-AGAACCTGACCGACGGAATTGGGGTTCCGACGATCGAGGGGGCCGGGGGA
* *
3142352 GGGTGTG-GCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTT-GCCCCCTATCCCT
65 ---TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTGGCCCCCTATCCCT
* *
3142415 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTAGAGATTTTACAGGTTTGCTGCCAGT
127 CATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
3142480 A-CC-TTAAAGTGTCTGAAATGGGGACAACTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
191 AGCCATTAAAGTGTCTGAAATGGGGAC-ACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
3142543 GTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAGGGATCACATCTACCAAGTTTGGG
255 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * *
3142608 GCCAAAAA-CCTTCCAAAAAATTTTAAAAAA-CCTGAACCACAAAAAGTTTTGAAAAAATCATGA
319 GCCAAAAATCCTTTCAAAAAATTTTAAAAAATCCCGAACCA-AAAAAG-TTT-CAAAAATCGTGA
*
3142671 AAAATAGAAAATGAGTCGTCGTCTGCCATGAAACTTCAACGTGAAGGCTTAAGGGACCATTGTAT
381 AAAATAGAAAACGAGTCGTC-T-TGCCATGAAACTTC-ACGTGAAGGCTTAAGGGACCATTGTAT
* *
3142736 GAATTTACAAGCCATAAAAATGGCATTGACATGCAGAAATATGAAGTTGTGCCTAAA-CCACCTA
443 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * ** *
3142800 CCACCTTATCGATCCACGGCTTGCG-ATCCCGTCTCTCTGGCTGACGTAGTGCCCTCCTGCCCGC
508 CCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCCC
* * * **
3142864 CCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGGTTGGATTG
573 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACAG
* * * * * * *
3142929 AAACTGAGGGTTGCGAATGGCAGCAGGATCGGTC-GCCACGTAGA-GGGGCCCCGGTCAATCCCC
638 GAA-TGA-GG--GC-TACGGCAGCAGGATC-GACAG-CACGCAGAGGGGGACCCGGTCGATCCCC
* * * * * * * * *
3142992 GGATTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGTACGCTCGTTTTGTGGGTTGACTTAG
696 GGCTTGTGCATCCCGCCCCTCTGGCAGGCTGTGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * *
3143057 GCATACGGAGTTGATTCCCAGTCTAAGATCG-GAC-C---A--GACCAAGGGTTGCGGCAGCTCA
761 GCATACGGAGTTCATTCCCAGTCTAAGATCGAGACACTAGACGGACCTAGGGTTACGGCAGCACA
* * * * *
3143115 TGCTAGGCTCAGGCATCTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGC
826 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCAC
* * * * * * *
3143170 CAGAGCATCGTCAAAGAACCTGACCGGCGGCATCGGGGTTCCGGA-GATCG-GGGGTTTCGGGGG
1 CGGAGCATCGTCAGAGAACCTGACCGACGGAATTGGGGTTCC-GACGATCGAGGGG--GCCGGGG
* * * *
3143233 GAAGGTGTGGGCACATGATGTAG-GGTGGGTGCTAGTACTTGGCCCTTAT-TTTGGCCCTCTATC
63 G-A--TGTGCGCACATGATGT-GCGATGGGTGCTGGTACTTGGCCCTTATATTTGGCCCCCTATC
* *
3143296 CCTCATCAAACCTCGAGAATTCACAGCCCCTTAAAGAGCATTTGAGATTTTACA-GTGTGCTGCC
124 CCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
3143360 AGTAGCCATTAAAGTGTC-GAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTC
188 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
3143424 AAGTTTTTAGCTGAATTTTTTTTGTGGCAAAGCCAACAAAAATACAAGGATCACCGTTCTACCCA
253 GAGTTTTTAGCTGAA-TTTTTTTGT-GC-ATGCCAAC-AAAATACAAGGATCA-CG-TCTA-CCA
* * ** * * * * **
3143489 AGTTTTGGGGCCAAAACTCGTGCCGAAAAAAATTTTTAAAAATCTCGAACTACAAAAGTTTGGAA
311 AG-TTTGGGGCCAAAAATCCTTTC--AAAAAATTTTAAAAAATCCCGAACCAAAAAAGTTTCAAA
* * * *
3143554 AATCATGAAAAATAGGAAAATGAGTCGTTCTTGCCATTAAAC-TCACGTGAAGGCTTAAAGGACC
373 AATCGTGAAAAATA-GAAAACGAGTCG-TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
** *
3143618 ATTGTATGAATTTACAAGCCATAAAAATTGGCATTGGTGTACAG-AATATGAAGATTGTGCCGTA
436 ATTGTATGAATTTACAAGCCATAAAAA-TGGCATTGGCATGCAGAAATATGAAGA-TGTGCC-TA
* * * * **
3143682 AACCCACCTACCACCCT-TCGATCCACGGCTGGCGCATCTCGGTCTCCGCTGGCCGGTGTAGTGC
498 AACCCACCTACCACCCTATCGATCCATGGCTTGCGCATC-CCGTCT-CTCTGGCCGACGTAGTGC
* * * * * * * ** *
3143746 CTG----CTCGCACG-CCGCTCATTTTCGTCAGGCTGGCTCAGGCATACATAGGTTCACTCCCAG
561 CCGCCCACCCCCCCGCCCGCTC-GTTTCGTC-GGTTGGCTTAGGCATACGGA-GTTCATTCCCAG
* * * * ** **
3143806 TCTAAGGATTTAGACCA-GACAGGAGGGTTTGCGGCAACAGGATGCGGTAGCACGTGGAGGGGGA
623 TCTAA-GA-TTAGA-CAGGA-ATGAGGG-CTACGGCAGCAGGAT-CGACAGCACGCAGAGGGGGA
* * * * * * *
3143870 CCCGGTCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCTA-GCTGAGCCCCCGCACACTCGTTT
682 CCCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGC-AGGCTGTGCGCCCGCACGCTCATTT
*
3143934 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AG--AC----CGGACCGAG
746 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAGACACTAGACGGACCTAG
* * * *** * * **
3143992 GGTTGCAGCAGCACATGCTAGGCTCGAAAATGTGTTGGTGCCGTATTTTTCTTCATCGGGGCACC
811 GGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
**
3144057 ATCGT
876 ATCAC
* * * * * * * *
3144062 CGGAGCATCGCCAGACAACATGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGT
1 CGGAGCATCGTCAGAGAACCTGACCGACGGAATTGGGGTTCCGACGATCGAGGGGGCCGGGGGAT
* *
3144127 GTGCGCGCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT-TTTGGTCCCCTATCCCTCATC
66 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTGGCCCCCTATCCCTCATC
* * *
3144191 AAACCTCGGGAACTCACACCCCTTAAAGAGCATTTGAGATTTCACAGGTTTGCTGCTAGTAGCCA
131 AAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
3144256 TTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTT
196 TTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
3144321 TAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACTTCTGCCAAGTTTGCGGCCAA
260 TAGCTGAATTTTTTTGTGCATGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * ****
3144386 AAATCCTTCCGAAAAAATTTTAAAAAA-CCTCAAATTGTTAAAAGTTTCAAAAATCGTGAAAAAT
324 AAATCCTTTC-AAAAAATTTTAAAAAATCC-CGAA-CCAAAAAAGTTTCAAAAATCGTGAAAAAT
*
3144450 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGG-TTAAGGGACCATTTTATGAATTTA
386 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG-AAGGCTTAAGGGACCATTGTATGAATTTA
* * * * * * *
3144514 GAAGCCGTAAAAATGGCATTGGCATGAAAAAATATCAAGATGTGGCTAAACCTACCTACCACCCT
450 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * *
3144579 ATCGATCCATGGCTTGCGCATCCCATCTCTCTGGCCGGCGCAGTGCCCG
515 ATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG
3144628 ACTGCCCGCC
Statistics
Matches: 4328, Mismatches: 444, Indels: 434
0.83 0.09 0.08
Matches are distributed among these distances:
834 84 0.02
835 26 0.01
836 31 0.01
837 5 0.00
838 3 0.00
839 2 0.00
840 1 0.00
842 1 0.00
845 4 0.00
846 50 0.01
847 6 0.00
848 2 0.00
850 25 0.01
851 38 0.01
852 48 0.01
853 35 0.01
854 93 0.02
855 68 0.02
856 67 0.02
857 12 0.00
858 13 0.00
859 14 0.00
860 79 0.02
861 11 0.00
862 1 0.00
865 1 0.00
867 4 0.00
869 2 0.00
872 2 0.00
874 3 0.00
876 1 0.00
877 48 0.01
878 16 0.00
879 27 0.01
880 24 0.01
881 210 0.05
882 233 0.05
883 291 0.07
884 126 0.03
885 19 0.00
886 32 0.01
887 52 0.01
888 105 0.02
889 93 0.02
890 175 0.04
891 94 0.02
892 257 0.06
893 35 0.01
894 29 0.01
895 1 0.00
896 21 0.00
897 46 0.01
898 61 0.01
899 111 0.03
900 63 0.01
901 49 0.01
902 107 0.02
903 946 0.22
904 28 0.01
905 51 0.01
906 41 0.01
907 77 0.02
908 61 0.01
909 46 0.01
910 21 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (880 bp):
CGGAGCATCGTCAGAGAACCTGACCGACGGAATTGGGGTTCCGACGATCGAGGGGGCCGGGGGAT
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTGGCCCCCTATCCCTCATC
AAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
AGCTGAATTTTTTTGTGCATGCCAACAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
ATCCTTTCAAAAAATTTTAAAAAATCCCGAACCAAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCCCCCGCCCGCTCGTT
TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACAGGAATGAGGGCTAC
GGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCCGCCCCT
CTGGCAGGCTGTGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
GTCTAAGATCGAGACACTAGACGGACCTAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGC
TGGTGCCGCATTTTTCTTCGCCGGGGCACCATCAC
Found at i:3140449 original size:26 final size:26
Alignment explanation
Indices: 3140413--3140463 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
3140403 GTTGACTTAG
3140413 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3140439 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
3140464 TGATTGGATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3141352 original size:26 final size:26
Alignment explanation
Indices: 3141316--3141368 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3141306 GTTGACTTAG
*
3141316 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
3141342 GCATACGGAGTTCATTTCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3141368 G
1 G
3141369 ATTGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:3142009 original size:12 final size:12
Alignment explanation
Indices: 3141992--3142022 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
3141982 GCCGCGTAGT
3141992 GCCCGCCCACCC
1 GCCCGCCCACCC
*
3142004 GCCCGCCCTCCC
1 GCCCGCCCACCC
3142016 GCCCGCC
1 GCCCGCC
3142023 TACTCGATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.03, C:0.74, G:0.19, T:0.03
Consensus pattern (12 bp):
GCCCGCCCACCC
Found at i:3143948 original size:892 final size:869
Alignment explanation
Indices: 3142154--3144626 Score: 3034
Period size: 892 Copynumber: 2.8 Consensus size: 869
3142144 CGCTATTACG
* * *
3142154 CTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTAGACCGAG
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
** * * * ** *
3142219 CATTACGGCAGCACATGCTGGGCTTGGGCATGTGCTCATGCCGTATTTTTCTTTGCCGAGGCACC
66 GGTTGCGGCAGCACATGCTAGGC-TCGGCATGTGCTGGTGCCGTATTTTTCTTTGCCGGGGCACC
* * * * * *
3142284 ATCACCGGAGCATCGTCGAAGAACCTGACCGACAGCATCAGGGTTCCGGCGATCAGGGGGCCGGG
130 ATCGCCGGAGCATCGTCAAAGAACCTGACCGGCGGCATCGGGGTTCCGGAGATC-GGGGG-CGGG
* *
3142349 GGAGG-GTGTGGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTTGCCCCCTATCC
193 GGAGGTGTG-GGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTAT-TTTGGCCCCTATCC
* *
3142413 CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTAGAGATTTTACAGGTTTGCTGCCA
256 CTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
3142478 GTA-CC-TTAAAGTGTCTGAAATGGGGACAACTTTTTCAAATGGTCACAAAATCTTGTACACTTT
320 GTAGCCATTAAAGTGTCTGAAATGGGGAC-ACTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
3142541 GAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAGGGATCACATCTACCAAGTTTG
384 AAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTG
*
3142606 GGGCCAAAAAC-CTTCC-AAAAAATTTTAAAAAACCT-GAACCACAAAAAGTTTTGAAAAAATCA
449 GGGCC-AAAACTCTTCCGAAAAAATTTTAAAAAACCTCGAACTAC-AAAAG-TTTG-AAAAATCA
3142668 TGAAAAATAGAAAATGAGTCGTCGTCTGCCATGAAACTTCAACGTGAAGGCTTAAGGGACCATTG
510 TGAAAAATAGAAAATGAGTCGTC-T-TGCCATGAAACTTC-ACGTGAAGGCTTAAGGGACCATTG
*** *
3142733 TATGAATTTACAAGCCATAAAAATGGCATTGACATGCAGAAATATGAAG-TTGTGCCTAAA-CCA
572 TATGAATTTACAAGCCATAAAAATGGCATTGGTGTACAG-AATATGAAGATTGTGCCTAAACCCA
* * *
3142796 CCTACCACCTTATCGATCCACGGCTTGCG-ATCCCGTCTCTCTGGCTGACGTAGTGCCCTCCTGC
636 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCGCTGGCCGACGTAGTG--C-CCTGC
* * * * * * *
3142860 CCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGGTTGG
698 CCGCACGCCCGCTCATTTTGTCGGCTGGCTCAGGCATACAGAGTTCACTCCCAGTCTAAGGTTAG
** * * * *
3142925 ATTGAAACTGAGGGTTGCGAATGGCAGCAGGATCGGTCGCCACGTAGAGGGGCCCCGGTCAATCC
763 ACAGAAACGGAGGGTTGC--A-GGCAACAGGATCGGTAGCCACGTAGAGGGGACCCGGTCAATCC
* * * *
3142990 CCGGATTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGTACG
825 CCGGATTGCGCATCCCGCCCCTCTGGCCAGCTGAGCACCCGCACA
* * * *
3143035 CTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAAGATCGGACCAGACCAAG
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * *
3143100 GGTTGCGGCAGCTCATGCTAGGCTCAGGCATCTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACC
66 GGTTGCGGCAGCACATGCTAGGCTC-GGCATGTGCTGGTGCCGTATTTTTCTTTGCCGGGGCACC
*
3143165 ATCGCCAGAGCATCGTCAAAGAACCTGACCGGCGGCATCGGGGTTCCGGAGATCGGGGGTTTCGG
130 ATCGCCGGAGCATCGTCAAAGAACCTGACCGGCGGCATCGGGGTTCCGGAGATCGGGGG---C-G
*
3143230 GGGGAAGGTGTGGGCACATGATGTAG-GGTGGGTGCTAGTACTTGGCCCTTATTTTGGCCCTCTA
191 GGGG-AGGTGTGGGCACATGATGT-GCGATGGGTGCTAGTACTTGGCCCTTATTTTGGCCC-CTA
* *
3143294 TCCCTCATCAAACCTCGAGAATTCACAGCCCCTTAAAGAGCATTTGAGATTTTACA-GTGTGCTG
253 TCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
3143358 CCAGTAGCCATTAAAGTGTC-GAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACT
317 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACT
*
3143422 TCAAGTTTTTAGCTGAATTTTTTTTGTGGCAAAGCCAACAAAAATACAAGGATCACCGTTCTACC
382 TCAAGTTTTTAGCTGAA-TTTTTTTGT-GC-ATGCCAACAAAAATACAAGGATCA-C-TTCTA-C
* * * *
3143487 CAAGTTTTGGGGCCAAAACTCGTGCCGAAAAAAATTTTTAAAAATCTCGAACTACAAAAGTTTGG
441 CAAG-TTTGGGGCCAAAACTC-TTCCG-AAAAAATTTTAAAAAACCTCGAACTACAAAAGTTTGA
* *
3143552 AAAATCATGAAAAATAGGAAAATGAGTCGTTCTTGCCATTAAAC-TCACGTGAAGGCTTAAAGGA
503 AAAATCATGAAAAATA-GAAAATGAGTCG-TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
3143616 CCATTGTATGAATTTACAAGCCATAAAAATTGGCATTGGTGTACAGAATATGAAGATTGTGCCGT
566 CCATTGTATGAATTTACAAGCCATAAAAA-TGGCATTGGTGTACAGAATATGAAGATTGTGCC-T
* * **
3143681 AAACCCACCTACCACCCT-TCGATCCACGGCTGGCGCATCTCGGTCTCCGCTGGCCGGTGTAGTG
629 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC-CCGTCT-CGCTGGCCGACGTAGTG
* *
3143745 -CCTGCTCGCACG-CCGCTCATTTTCGTCAGGCTGGCTCAGGCATACATAGGTTCACTCCCAGTC
692 CCCTGCCCGCACGCCCGCTCATTTT-GTC-GGCTGGCTCAGGCATACAGA-GTTCACTCCCAGTC
* *
3143808 TAAGGATTTAGACCAGACA-GGAGGGTTTGC-GGCAACAGGATGCGGTAG-CACGTGGAGGGGGA
754 TAAGG--TTAGA-CAGAAACGGAGGG-TTGCAGGCAACAGGAT-CGGTAGCCACGTAGA-GGGGA
* *
3143870 CCCGGTCAATCCCC-GACTTGCGCATCCCGCCCCTCTGGCTAGCTGAGCCCCCGCACA
813 CCCGGTCAATCCCCGGA-TTGCGCATCCCGCCCCTCTGGCCAGCTGAGCACCCGCACA
*
3143927 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* ** * ***
3143992 GGTTGCAGCAGCACATGCTAGGCTCGAAAATGTGTTGGTGCCGTATTTTTCTTCATCGGGGCACC
66 GGTTGCGGCAGCACATGCTAGGCTCG-GCATGTGCTGGTGCCGTATTTTTCTTTGCCGGGGCACC
* * * * * * *
3144057 ATCGTCGGAGCATCGCCAGACAACATGACCGGCGGCATTGGGGTT-CTGACGATCGGGGG-GGCC
130 ATCGCCGGAGCATCGTCAAAGAACCTGACCGGCGGCATCGGGGTTCCGGA-GATCGGGGGCGG--
* * * *
3144120 GGGGGGTGTGCGCGCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATTTTGGTCCCCTATCC
192 GGGAGGTGTGGGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATTTTGG-CCCCTATCC
* * *
3144185 CTCATCAAACCTCGGGAACTCACACCCCTTAAAGAGCATTTGAGATTTCACAGGTTTGCTGCTAG
256 CTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
3144250 TAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCT
321 TAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCA
* * *
3144315 AGTTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACTTCTGCCAAGTTTGC
385 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGG
* * * ** * *
3144380 GGCCAAAAATCCTTCCGAAAAAATTTTAAAAAACCTCAAATTGTTAAAAGTTTCAAAAATCGTGA
450 GGCCAAAACT-CTTCCGAAAAAATTTTAAAAAACCTCGAACT-ACAAAAGTTTGAAAAATCATGA
* *
3144445 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGG-TTAAGGGACCATTTTATGA
513 AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTG-AAGGCTTAAGGGACCATTGTATGA
* * * * * * *
3144509 ATTTAGAAGCCGTAAAAATGGCATTGGCATG-AAAAAATATCAAGA-TGTGGCTAAACCTACCTA
577 ATTTACAAGCCATAAAAATGGCATTGG--TGTACAGAATATGAAGATTGTGCCTAAACCCACCTA
* * * * *
3144572 CCACCCTATCGATCCATGGCTTGCGCATCCCATCTCTCTGGCCGGCGCAGTGCCC
640 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCGCTGGCCGACGTAGTGCCC
3144627 GACTGCCCGC
Statistics
Matches: 1386, Mismatches: 148, Indels: 117
0.84 0.09 0.07
Matches are distributed among these distances:
879 14 0.01
880 30 0.02
881 203 0.15
882 84 0.06
883 119 0.09
884 122 0.09
885 20 0.01
886 23 0.02
887 54 0.04
888 105 0.08
889 101 0.07
890 91 0.07
891 88 0.06
892 268 0.19
893 29 0.02
894 28 0.02
895 7 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (869 bp):
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
GGTTGCGGCAGCACATGCTAGGCTCGGCATGTGCTGGTGCCGTATTTTTCTTTGCCGGGGCACCA
TCGCCGGAGCATCGTCAAAGAACCTGACCGGCGGCATCGGGGTTCCGGAGATCGGGGGCGGGGGA
GGTGTGGGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATTTTGGCCCCTATCCCTCAT
CAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAA
AACTCTTCCGAAAAAATTTTAAAAAACCTCGAACTACAAAAGTTTGAAAAATCATGAAAAATAGA
AAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
CCATAAAAATGGCATTGGTGTACAGAATATGAAGATTGTGCCTAAACCCACCTACCACCCTATCG
ATCCACGGCTTGCGCATCCCGTCTCGCTGGCCGACGTAGTGCCCTGCCCGCACGCCCGCTCATTT
TGTCGGCTGGCTCAGGCATACAGAGTTCACTCCCAGTCTAAGGTTAGACAGAAACGGAGGGTTGC
AGGCAACAGGATCGGTAGCCACGTAGAGGGGACCCGGTCAATCCCCGGATTGCGCATCCCGCCCC
TCTGGCCAGCTGAGCACCCGCACA
Found at i:3145469 original size:26 final size:26
Alignment explanation
Indices: 3145440--3145492 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3145430 GTTGACTTAG
3145440 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
3145466 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3145492 G
1 G
3145493 ACCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:3146375 original size:26 final size:26
Alignment explanation
Indices: 3146346--3146397 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
3146336 GTGGATTTAG
*
3146346 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3146372 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3146398 TATCGGACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3147026 original size:913 final size:900
Alignment explanation
Indices: 3144654--3148386 Score: 4639
Period size: 913 Copynumber: 4.2 Consensus size: 900
3144644 CTGGGTTGCG
* * ** ** * * *
3144654 CATTTTTCTTTG-CTGGGGCACCATCATCGGAGCATCATCGAAGAACCTGACCGGCGGCATCGGA
1 CATTTTTCTTCGTC-GGAGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGG
* *
3144718 GTTCCGGCGATCGGGGGGGTCGGATGGGGGTGTGCGCACATGATGTGCGATGGGTGC-GGTACTT
65 GTTCCGACGATCGGGGGGGCCGG--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
3144782 GGCCCTTATATTGG-CCCTTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTTAAAGAGCAT
128 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC-TTAAAGAGCAT
* *
3144846 TTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATTGGGACAC-TTTTTCGA
192 TTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC-A
* * *
3144910 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTCTTGTGCATACCAAAAAAAA
256 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* * * *
3144975 TACATGGATCACGTCTACC-AGGTTTGGGGCCAAAACCCCTTTCCAAAAAAATTATGAAAATCTC
321 TACAAGGATCACGTCTACCAAGG-TTGGGGCCAAAACTCCTTTCCAAAAAAATTTTAAAAATCTC
* * *
3145039 GAACCGCAAAAAGTTTCAAAAAATCGTGAAAAATAG-AAACG-GTTGTCTTGCCATTGAAACTTC
385 AAACCGTAAAAAGTTTC--AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA-TGAAACTTC
* * *
3145102 ACGTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAT-GCATTGGCACGTAG
447 A-GGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCATGCAG
*
3145166 AAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC
510 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC
* *
3145231 TCTGGCCGACGTAGTG----CCCGCCCGCC-CGCTCCTTTCGTCGGTTGGCTTAGGCATATGGAG
575 TCTGGCCGACGTAGTGCCCACCCGCCCGCCACGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * *
3145291 TTCATTCCCAATTTAAGATCGGA-CTGAATCGAGAGTTGCGATAGCAGGATCAGTAC--CATGCA
640 TTCATTCCCAGTCTAAGATCGGACCGGACT-GAGAGTTGCGACAGCAGGATC-G-ACAGCACGCA
* * * * * * *
3145353 GGGGGGGACCCGACCGAT-CGTCGGCTTGTGCATCCCACCCCACTGGCCGGTTGAGCGCCCGTAC
702 GAGGGGGACCCGACCGATCCCT-AGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTAC
* * * *
3145417 GTTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT
766 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * *
3145482 CCCAGTCTAAGACCAGACCGGACCGAGCGTTGCGACAGCACATGCTGGGCTCGGGCATTTGCTGG
831 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGG
*
3145547 TGCCG
896 TGCCA
* * * *
3145552 CATTTTTCTTTGTCGGAGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCGGCGACATTGGGG
1 CATTTTTCTTCGTCGGAGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGG
* *
3145617 TTCCGACAATC-GGGGGGCC-GGGGGGTGAGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
66 TTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * * *
3145680 CCTTTTATTGGCCCCCTATCCCGCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGAATTTGA
131 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
3145745 GATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
196 GATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
*
3145810 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAA
261 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
*** * * *
3145875 GGATCACGTCTACCATTTTTGGGGCCAAAACTCCTTT-CAAAAAAATTTAAAAAAATCTCGAATC
326 GGATCACGTCTACCAAGGTTGGGGCCAAAACTCCTTTCCAAAAAAATTT-TAAAAATCTCAAACC
* * * * * *
3145939 GTAAAAATTTTTGAAAATCGTGAAAAATTA-AAAACGAGTCATGTTGCCATGAAGCTTCATGTGA
390 GTAAAAA-GTTTCAAAATCGTGAAAAA-TAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGA
*
3146003 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAA
453 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
*
3146068 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
518 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCG
* * *
3146133 ATGTAGTGCCCGCCCGTCCGCCCACCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
583 ACGTAGTGCCCACCCGCCCG-CCA------CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * ** ** * *
3146198 TCTTTCCCAGTCTAAGATTGGACCGGACTAAGGGTTATGGTAGCAAGATCGACAGCACGTAGAGG
641 TCATTCCCAGTCTAAGATCGGACCGGACTGAGAGTTGCGACAGCAGGATCGACAGCACGCAGAGG
* * *
3146263 GGGACTCGACC-ATTCCCTAACTTCCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTC
706 GGGACCCGACCGA-TCCCTAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTC
* * * * *
3146327 GTTTTGTGGGTGGATTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATATGGAGTTCATTCCCA
770 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * ** * *
3146392 GTCTAATATCGGACCAGACCGAGGGTTTGCGGTAGCACATGTTGGGCT-GGGCATGTGCTAGTGC
835 GTCTAAGATCGGACCGGACCGAGGG-TTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
*
3146456 CG
899 CA
* * *
3146458 CATTTTGTCTTCG-CGGACAACGTACCATCGCCGGAGCATCGTCGGAGAACCTAACCGGCAGGCA
1 CATTTT-TCTTCGTCGG---A-GCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGC-GGCA
* *
3146522 TTGGGGTTCCGACGATC-GGGGGACCGGGGGCGGTGTGCCCAACATGATGTGCGGATGGGGTGCT
60 TTGGGGTTCCGACGATCGGGGGGGCCGGGGG-GGTGTGCGC-ACATGATGTGC-GAT-GGGTGCT
* *
3146586 -GTACTT-GCCCTTATATTGG-CCCC-ATCCCTCATCAAACC-CGAGAACTCACGCTCCCTTAAA
121 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * *
3146646 GAGCATTTGAGATTTTACAGGTTTGCTACCAGCAAGCCATTAAAGTGTCTTAGAATGGGGACAGC
186 GAGCATTTGAGATTTTACAAGTTTGCTGCCAG-TAGCCATTAAAGTGTCTGA-AATGGGGACA-C
* *
3146711 TTTTTTCAAATGGTTACCAAAATCTTGTACACTTTGAG-TTTTAGCTGACA-TTTTTTGTGCATG
248 TTTTTTCAAATGGTCA-CAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTTGTGCATG
* * * *
3146774 CC-AACAAAGTACAAGGATCAGGTCTGGCCAAGGTTGGGTGCCAAAAACTCC-TT-CAAAAAAAT
311 CCAAAAAAAATACAAGGATCACGTCT-ACCAAGGTTGGG-GCC-AAAACTCCTTTCCAAAAAAAT
* *
3146836 TTTAAAAATCTACAAACCG-CAAAAGTTTCAAAATCGTTAAAAATAGAAAACGAGTCGTCTTGCC
373 TTTAAAAATCT-CAAACCGTAAAAAGTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
3146900 ATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
437 ATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * *
3146965 GCATGCAAAAATATGAATATGTGCCTAACCCCAGCTACCACCCTATCGATCCATGGCTTGCGCAT
502 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
*
3147030 CCCGCCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCA-GCTCGTTTCGTCGGTTGGCTTAAGC
567 CCCGCCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCACGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * **
3147094 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAAC--CGAGTTGCGACAGTAGGCTCGGTAGC
632 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGAGTTGCGACAGCAGGATCGACAGC
* * ** *
3147157 ACACAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGACC
697 ACGCAGAGGGGGACCCGACCGATCCCTAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
** * * * *
3147222 ACACACTCGTTCCGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAAGCAAACGGAGTT
762 GTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * *
3147287 CATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATATG
827 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTG
3147352 CTGGTGCCA
892 CTGGTGCCA
* * * * *
3147361 TATTTTTCTTCGTC-GAG-------G-C--ACCATCGCCGGAGAATCTAACCGGCGGCATTGGTG
1 CATTTTTCTTCGTCGGAGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGG
* * * * *
3147415 TTTCGACGATCGGGGGGCCCGGGGGGGTGTGCGCACATGATGTACGGTTGGTGCTGGTACTTGGC
66 TTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
3147480 CCTTTTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
131 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * * * *
3147545 GAGTTTACAGGTTTGCTGCCAGTAGCCATCAATGTTTCTGAAATGGGGACACTTTTTTCAAATGG
196 GATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
3147610 TCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAA
261 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* * * *
3147675 GGATCACATCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAAAAATTTTAAAAAATCCCAAACC
326 GGATCACGTCTACCAAGGTTGGGGCCAAAACTCCTTTCCAAAAAAATTTT-AAAAATCTCAAACC
* * *
3147739 GTAAAAAGTTTCAAAATCATGAAAAATAGAAAACCAGTCGTCTTGCCATGAAACTTTAGGTGAAG
390 GTAAAAAGTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAG
* * *
3147804 GCTTAAGCGAGCATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCAGGCAGAAATATGAAG
455 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
** ** *
3147868 ACATGCCTAAAATCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGTCGAC
520 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGAC
* * * *
3147933 GTAGTGCCCACCTGCCCGCCAGCCCGTTCGTTTCGTCGATTGGCTTAGGCATACAGAGTTCATTC
585 GTAGTGCCCACCCGCCCGCCA---CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * *
3147998 CCAGTCTAAGATTGGACCGGACCGAGGGTTGC-AGCAACAGGATC-AGTAGCACGTAGAGGAGGA
647 CCAGTCTAAGATCGGACCGGACTGAGAGTTGCGA-CAGCAGGATCGA-CAGCACGCAGAGGGGGA
* *
3148061 CCCGACCGATCCGC-AGCTTGCGCTTCCCGCCCCTCTGGCCGGTTGAGCGCCCGTACGC-CTGTT
710 CCCGACCGATCC-CTAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTC-GTT
* * *
3148124 TCGCT-GTTTGACTTAGGCATACGGAGTTCATTCCCAATCTGAGCATACGGAGTTCATTCCCAGT
773 TCG-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* *
3148188 CTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCA
837 CTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA
* * *
3148252 CATTTTTCTTCGT-GGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGCG
1 CATTTTTCTTCGTCGGAGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGG
* * * * * *
3148316 TTCCGGCAATCGGGGGGGTCGGGGGGGTTGTGCGCACATGGTGTGCGATGGATGCTGGTACTTTG
66 TTCCGACGATCGGGGGGGCCGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
3148381 CCCTTA
130 CCCTTA
3148387 AAGTGTCTGA
Statistics
Matches: 2452, Mismatches: 295, Indels: 172
0.84 0.10 0.06
Matches are distributed among these distances:
884 16 0.01
885 153 0.06
886 170 0.07
887 59 0.02
888 63 0.03
889 106 0.04
890 3 0.00
891 206 0.08
892 2 0.00
893 6 0.00
894 183 0.07
895 216 0.09
896 53 0.02
897 7 0.00
898 74 0.03
899 5 0.00
901 52 0.02
902 62 0.03
903 173 0.07
904 3 0.00
905 60 0.02
906 226 0.09
907 30 0.01
909 1 0.00
910 33 0.01
911 74 0.03
912 40 0.02
913 227 0.09
914 83 0.03
915 51 0.02
916 15 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (900 bp):
CATTTTTCTTCGTCGGAGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGG
TTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
GGATCACGTCTACCAAGGTTGGGGCCAAAACTCCTTTCCAAAAAAATTTTAAAAATCTCAAACCG
TAAAAAGTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACG
TAGTGCCCACCCGCCCGCCACGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATCGGACCGGACTGAGAGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGAC
CGATCCCTAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
GACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA
Found at i:3149162 original size:812 final size:811
Alignment explanation
Indices: 3147581--3149198 Score: 2269
Period size: 812 Copynumber: 2.0 Consensus size: 811
3147571 CATCAATGTT
3147581 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAA
1 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAA
* * *
3147646 TTTTTTTGTGCATGCCAATAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTT
66 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCAAAAAATCCTT
* *
3147711 CCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAATCATGAAAAATAGAAAACCAG
131 CCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAATCATGAAAAATAAAAAACCAG
* * * * * *
3147776 TCGTCTTGCCATGAAACTTTAGGTGAAGGCTTAAGCGAGCATTGTATGAATTTACAAGCCATAAA
196 TCATCTTCCCATGAAACTTCACGTGAAGGCTTAAGCGACCATTCTATGAATTTACAAGCCATAAA
* * * *
3147841 ATGGCATTGGCAGGCAGAAATATGAAGACATGCCTAAAATCACCTACCACCCTATCGATCCACGG
261 ATGGCATTGGCACGCAGAAATATGAAGACATGCCTAAAACCACCTACCACCATATCGATCCACGA
* * * * **
3147906 CTTGCGCATCCCGCCTCTCTGGTCGACGTAGTGCCCACCTGCCCGCCAGCCCGTTCGTTTCGTCG
326 CTTGCGCAGCCAGCCTATCTGGTCGACATAGTGCCCACCTGCCCGCCAGCCCACTCGTTTCGTCG
**
3147971 ATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAGCAAC
391 ATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAAC
* * *
3148036 AGGATCAGTAGCACGTAGAGGAGGACCCGACCGATCCGCAGCTTGCGCTTCCCGCCCCTCTGGCC
456 AGGATCAGCAGCACGCAGAGGAGGACCCGACCGATCCGCAGCTTGAGCTTCCCGCCCCTCTGGCC
* * * * *
3148101 GGTTGAGCGCCCGTACGCCTGTTTCGCTGTTTGACTTAGGCATACGGAGTTCATTCCCAATCTGA
521 GGTTGAGCGCCCGCACGCCTGTTTCGCTGGTTGACTTAGGCATACGAAGTTAATTCCCAATCTAA
*
3148166 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTAGG
586 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGACAGCACATGCTAGG
* * *
3148231 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTGGGGCACCATCGCCGGAGCATCGCCAGAGAA
651 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTGGGGCACCATCGCCAGAGCATCCCCAGAGAA
* * * * *
3148296 CCTGACCGGCGGCATTGGCGTTCCGGCAATCGGGGGGGTCGGGGGGGTTGTGCGCACATGGTGTG
716 CCTGACCGGCGGCATTGGCGTTCCAGCAATCGGGGGGGCCGGAGGGGTTGTGCGCACATGATGAG
*
3148361 CGATGGATGCTGGTACTTTGCCCTTAAAGTG
781 CGATGGATGCTGGTACTTGGCCCTTAAAGTG
*
3148392 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
1 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAA
* *
3148457 TTTTTTT-TGCATGCCAAAAAAAATACAGGGATCATATCTACCAAGTTTGGGGCAAAAAATCCTT
66 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCAAAAAATCCTT
* ** * * **
3148521 CCAAAAAAATTTTTAAAAATCCTGAACCGTAAAAAGTTTCGAAAGTCGTGAAAAATAAAAAATGA
131 CCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTC-AAAATCATGAAAAATAAAAAACCA
* * *
3148586 GTCATCTTCCCGTGACACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAA
195 GTCATCTTCCCATGAAACTTCACGTGAAGGCTTAAGCGACCATTCTATGAATTTACAAGCCAT-A
* ** *
3148651 AAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCAC
259 AAATGGCATTGGCACGCAGAAATATGAAGACATGCCTAAAACCACCTACCACCATATCGATCCAC
* * *
3148716 GACTTGCGCAGCCAGTCTATCTGG-CTGACATAGTGCCCGCCTGCCCGCCCGCCCACTCGTTTCG
324 GACTTGCGCAGCCAGCCTATCTGGTC-GACATAGTGCCCACCTGCCCGCCAGCCCACTCGTTTCG
* * * * * **
3148780 TCGATTGGTTTTGGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGC
388 TCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGC
* * * * * *
3148845 AGCAGGATC-GACAGCATGCAGAGGGGGATCCGATCGATCC-CAAGCTTGAGCTTCCCGCCCGTC
453 AACAGGATCAG-CAGCACGCAGAGGAGGACCCGACCGATCCGC-AGCTTGAGCTTCCCGCCCCTC
* * *
3148908 TGGCCTGTTGAGTGCCCGCACG-CTCGTTTCG-TGGGTTGACTTAGGTATACGAAGTTAATTCCC
516 TGGCCGGTTGAGCGCCCGCACGCCT-GTTTCGCT-GGTTGACTTAGGCATACGAAGTTAATTCCC
* * * * **
3148971 AGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATTGGACTGAGGGTTACGGTAGCACA
579 AATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGACAGCACA
* * * * *
3149036 TGTTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGTCAGAGCATCC
644 TGCTAGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGT-GGGGCACCATCGCCAGAGCATCC
* * * * *
3149101 CCAGAGAACCTGACTGGCGGCATTGGGGTTCTAGCGATCGGGGGGGCCTGAGGGG-TGTGCGCAC
708 CCAGAGAACCTGACCGGCGGCATTGGCGTTCCAGCAATCGGGGGGGCCGGAGGGGTTGTGCGCAC
*
3149165 ATGATGAGCGATGGGTGCTGGTACTTGGCCCTTA
773 ATGATGAGCGATGGATGCTGGTACTTGGCCCTTA
3149199 TATTGGCCCC
Statistics
Matches: 705, Mismatches: 94, Indels: 15
0.87 0.12 0.02
Matches are distributed among these distances:
810 88 0.12
811 150 0.21
812 400 0.57
813 67 0.10
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (811 bp):
TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAA
TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCAAAAAATCCTT
CCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAATCATGAAAAATAAAAAACCAG
TCATCTTCCCATGAAACTTCACGTGAAGGCTTAAGCGACCATTCTATGAATTTACAAGCCATAAA
ATGGCATTGGCACGCAGAAATATGAAGACATGCCTAAAACCACCTACCACCATATCGATCCACGA
CTTGCGCAGCCAGCCTATCTGGTCGACATAGTGCCCACCTGCCCGCCAGCCCACTCGTTTCGTCG
ATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAAC
AGGATCAGCAGCACGCAGAGGAGGACCCGACCGATCCGCAGCTTGAGCTTCCCGCCCCTCTGGCC
GGTTGAGCGCCCGCACGCCTGTTTCGCTGGTTGACTTAGGCATACGAAGTTAATTCCCAATCTAA
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGACAGCACATGCTAGG
CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTGGGGCACCATCGCCAGAGCATCCCCAGAGAA
CCTGACCGGCGGCATTGGCGTTCCAGCAATCGGGGGGGCCGGAGGGGTTGTGCGCACATGATGAG
CGATGGATGCTGGTACTTGGCCCTTAAAGTG
Found at i:3149529 original size:26 final size:26
Alignment explanation
Indices: 3149499--3149551 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3149489 GTTAACTTAG
3149499 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
* *
3149525 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
3149551 G
1 G
3149552 ATCAGATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTCTAA
Found at i:3151063 original size:26 final size:26
Alignment explanation
Indices: 3151026--3151078 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3151016 GTTGACCCAG
3151026 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
3151052 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3151078 G
1 G
3151079 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:3151248 original size:26 final size:26
Alignment explanation
Indices: 3151212--3151263 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
3151202 TGACTTAGGC
3151212 ATACAGAGTTCATTCCCAGTCTAAGA
1 ATACAGAGTTCATTCCCAGTCTAAGA
*
3151238 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACAGAGTTCATTCCCAGTCTAAGA
3151264 TCAGATTGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGA
Found at i:3152087 original size:26 final size:26
Alignment explanation
Indices: 3152051--3152103 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3152041 GTTGACTTAG
3152051 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
3152077 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3152103 G
1 G
3152104 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:3152972 original size:26 final size:26
Alignment explanation
Indices: 3152943--3152995 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3152933 GTTGACTTAG
3152943 GCATACGGAGTTCATTACCAATCTAA
1 GCATACGGAGTTCATTACCAATCTAA
* *
3152969 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAATCTAA
3152995 G
1 G
3152996 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAATCTAA
Found at i:3153867 original size:26 final size:26
Alignment explanation
Indices: 3153831--3153883 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3153821 GTTGACTTGG
*
3153831 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAATCTAA
*
3153857 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCACTCCCAATCTAA
3153883 G
1 G
3153884 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAATCTAA
Found at i:3154765 original size:26 final size:26
Alignment explanation
Indices: 3154731--3154781 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
3154721 TGACTTAGGG
* *
3154731 ATACGGAGTTTATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
3154757 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
3154782 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:3155204 original size:882 final size:883
Alignment explanation
Indices: 3151355--3157515 Score: 7978
Period size: 882 Copynumber: 7.0 Consensus size: 883
3151345 TCGTCGGAGC
* * **
3151355 ATCGAGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATAAGTGCTGGTACTTGGCCCTTATATT
1 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * ***
3151420 GGCCCTCTATCCCTCATCAAACCTCGAGAACTCACGCTTGCTTACAA-AGCATTTGAGATTTTAC
66 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA-AAGAGCATTTGAGATTTTAC
* * *
3151484 AGGTTTGCTGCCAATAGCCATTAAAGTGTCTGCAATGGGGATACTTTTTTCAAATGGTCACAAAA
130 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * * *
3151549 TCTTGTACACTTTGAGTTTTTAGCT-AACTTTTTTATGCATGCCAACAAAAGTACAAGGATCAGG
195 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT-ACG
* * * *
3151613 TCTACCAAGTTTGGCGCCAAAACTCCTTCTG-AAAAAGTTTAAAAAATCTCGAACCGTAAAAAGT
259 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
* ** * * *
3151677 TTTAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCAGGTTAAGGCTTAAGG
324 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGG
*
3151742 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAGGAAGATGTGCCT
389 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
** *
3151807 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTT-TGGCCAACGGAGT--
454 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT-TTCTGGCCGGCGTAGTGC
* *
3151869 --GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTGCCAGTCTAAGA
518 CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* *** * * *
3151932 TCAGACCGGACCAAAACTTACGGTAGCAGGATCGGCAGCTCGCAGAGGGGGA--C--C-A-----
583 TCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACGATCCCC
* * *
3151987 -GCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCTTGGGTTGACTTAG
648 GGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
3152051 GCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGAC
713 GGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * *
3152116 CAAGGGTTGCGGCAGCACATGTTGGGCTC-GGTCATGTGCTAGTGCCGCATTTTTCTTCGTCGGG
778 CAAGGGTTGCGGCAGCACATGCTGGGCTCAGG-CATGTGCTGGTGCCGCATTTTTCTTCG-C-CG
* * * * * *
3152180 GCACCATCGTCGAAAAACCTGACCGGCGGCATTGGGGTTCCGGCG
840 G-AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
3152225 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
1 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
3152290 GACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTACA
66 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
3152355 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAAT
131 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
3152420 CTTGTACACTTCGAGTTGTTGGCTGAATTTTTTTGTGCATGCCAA-AAAATATACAAGGATCACG
196 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA-ATACAAGGAT-ACG
* * * * * *
3152484 TCTACCAAGTTTAGGCCCAAAACTCTTTCCAAAAAAATTTTAAAAAATCCCAAACCATAAAAAGT
259 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
** * * * * *
3152549 TTTGAAAATCATGAAAAATAGAAAATGAGTCGTGTTGCCATTAAACTTCACGTGAAGGGTTAAGG
324 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGG
* *
3152614 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGTAGATGTGCGT
389 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* * *
3152679 AAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGCAGTGCC
454 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAGTG--
* * * * *
3152744 CGCCTGCCCGCCCGCCCGCTCATTTCGTCGGTTAGCTTAGGCATACGAAGTTCATTCCCAATCAA
517 C-CC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * *
3152809 AGATCAGACCGGACTGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCAGTCAAT
580 AGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGGGGGACCC-GACGAT
* * *
3152874 CCTCGGCTTGCGTATCCCACCCCTCTGGCCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGAC
644 CCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * * *
3152939 TTAGGCATACGGAGTTCATTACCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC
709 TTAGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * ***
3153004 GGATCAAGGGTTGTGGCCGCACATGCTGGGCTC-GGCCATGTGCTGGTGTTTCATTTTTCTT---
774 GGACCAAGGGTTGCGGCAGCACATGCTGGGCTCAGG-CATGTGCTGGTGCCGCATTTTTCTTCGC
* ** * *
3153065 -----CAT---CAGAGAACCTGACCGGTGGCATTCGGGTTTCGACG
838 CGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
*
3153103 ATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGTGTGCT-GTACTTGGCCCTTATAT
1 ATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
3153167 CGGCCCCCTATCCCACATCAAACCTCGAGAACTCACGCCCCCTTAAAGAGCATTTGAGATTTTAC
65 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * *
3153232 AGGTTTGTTGTCAGTGGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
130 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
3153297 TCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAAATACAAGGATCAAG
195 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT-ACG
* *
3153362 TCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCATAAAAAGT
259 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
3153427 TTCAAAAATCATGAAAAATAGAAAACGAGTCGACTTGCATGAAAATGGACCATAGAAAACTTCAT
324 TTCAAAAATCATGAAAAATAGAAAACGAGTCG---T-C-T-----T-G-CCAT-G-AAACTTCAT
* * *
3153492 GTGAAGGCTTAAGGGACCATTGTA-CAGATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAA
375 GTGAAGGCTTAAGGGACCATTGTATGA-ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * *
3153556 TATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGGATTGCGCATCCCGTCTCTCT
439 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCT
* * * * *
3153621 GGCCGGCGTAGTGCCCGCCTGCCCGTCCGCTCGTTTTGTCAGTTGGCTTAGGCATATGGAGTTCA
504 GGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * *
3153686 TTCCCTA-TCTAAGATTAGACTGGACCGAGGGTTGCGGTAGCAGGATC-AGCAGCACACAGAGGG
569 TTCCC-AGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGA-CAGCACGCAGAGGG
* * * * * *
3153749 GGATCCGGCCGATCCCTGGCTTACGCATCCCACCCCTCTGGCCGGCTGACCGCCCGCACGCTCAT
632 GGA-CCCGACGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* *
3153814 TTCGTGGGTTGACTT-GGGCATACGGAGTTCACTCCCAGTCTAAGCATACGGAGTTCATTCCCAA
696 TTCGTGGGTTGACTTAGGG-ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * ** **
3153878 TCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCACAGGCATGTGCTGGCACTA
760 TCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCG
* * *
3153943 CATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCGTTAGGG
825 CATTTTTC-T--TC---G------C--CGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
*
3154008 TTACGACG
876 TTCCGACG
* * * *
3154016 ATCGGGGGGGCTGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCGCTTATAG
1 ATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
3154081 TGGCCCCTTATCCCTCATCAAACCTCGAGATCTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
65 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
3154146 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAA
130 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
3154211 TCTTGTACACTGCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAATGAGCACG
195 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA-TACG
* * * * *
3154276 TCTACCTAGATTGGGGCCAAAACTCCTTCC-AAAATAATTTAAAAAAATCCCAAACCGCAAAAAG
259 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-AATTTTAAAAAATCCCGAACCGTAAAAAG
* *
3154340 TTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAA
323 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAG
* *
3154405 GGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAATATGTGCC
388 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
*
3154470 TAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTTTCTGGCCGGCGTAGTGC
453 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAGTGC
* *
3154535 CCGCCCGCCCGCCCGCTCGTTTCGTC-GTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAACA
518 CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * **
3154599 TTAGACCAGACCGAGGGTTACAGCAGCAGGATCGACATCACGCAGAGGGCAACCCGACGATCCCC
583 TCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACGATCCCC
* ** * **
3154664 GGCTTGCGCGTCCCTTCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTAATGGGTTGACTTAG
648 GGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
3154729 GGATACGGAGTTTATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
713 GGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* ** * * *
3154794 CAAGGGTTGCAGCAATATATGCTGGGCTCAAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGAG
778 CAAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGAG
*
3154859 CATCGCCGGAGAACCTGACCGACAGCATTGGGGTTCCGACG
843 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* * * *
3154900 ATC-AGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGGCCTTATATC
1 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
3154964 GGCCCCCTATCCCTTATCAAATCTCGAGAACTCACACCCCCTTAGAGAGCATTTGAGATTTTACA
66 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
3155029 GGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
131 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * * **
3155094 CTTGTACACTTTGATTTTTTAGATGAATTTTTTTGTACATGCCAACAAAAATACAAGGATATTTT
196 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATA-CGT
**
3155159 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTAAAAAAAATCCCGAACCGTAAAAAGTT
260 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
* * *
3155224 TTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGTTTAAGGG
325 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGG
* ** * **
3155289 ACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTTTCTA
390 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * *
3155354 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCAGCGTAGTGCCC
455 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAGTGCCC
* * * * *
3155419 GCCCGCCGGCCCGTTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTGCTAGTCTAAGATC
520 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* ** * ** * * *
3155484 AAACCAAACTGA--GTTGTGGCAACAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTG
585 AGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-CGATCCCCG
* * * * *
3155547 GCTTACGCATCCCACCCCTCTGGCCGACTGAGCGCTCGCATGCTCATTTCGTGGGTTGACTTAGG
649 GCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* ** * * * *
3155612 CATACGGAGTTCATTCTAAGTCTAAGCATACGTAGTTCATTCCCAGTGTAAGATAGGACCGGAAC
714 GATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * * *
3155677 GAGGGTTGCGGTAGCACATGCTGGGCTCAGGCATGTGATGGTGCCGCATTTTTCTTCGTCGGGGC
779 AAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCG-C-CGG-
* * *
3155742 ACCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCG
841 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* * * * *
3155785 ATCGGGGGGTCGAGGGGGGTGTGCACACATGATGTACGATGAGTGCTGGTACTTGGCCCTTATAT
1 ATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * * *
3155850 TGGCCCCTTATCTCTCATCAAACCTCGAGATCTCACACCCTCTTAAAGAGCATTTGAGATTTTAC
65 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* ** *
3155915 AGGTTTGCTACCAGTAGCCATTAAAGTGTCTTG-AATAAGGACACTTTTTTGAAATGGTCACAAA
130 AGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * *
3155979 ATCTTGTACACTGCGAGTTTTTAGTTGAATTTTTTTATGCATGCCAA-AAAAATACAATGAGCAC
194 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA-TAC
* * * * **
3156043 GTCTACCTAGTTTGGGGACAAAACTACTTTCCGAAAGAATTTTAAAAAATCCCGAACCACAAAAA
258 GTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
* * *
3156108 GTTTCAACAATCATGAAAAATAGAAAATGAGTCGTCTCGCCATGAAACTTCATGTGAAGGCTTAA
322 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAA
* *
3156173 AGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCAT--AGAAATATGAAGATGTGC
387 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
* *
3156236 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTTTTTCTGGTCGGCGTAGTG
452 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAGTG
* * *
3156301 CCCGCCCGCCCGCCCGTCCGCGTGTTTCGTCGGTTAGCTTAGGCATACGAAGTTCATTCCCAGTC
517 CCCGCCCGCCCGCCCG--CTC--GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * *
3156366 TAAGATCAGACCGGACCGAAGGTTATGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCAGGCCC
578 TAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGGGGGACC-CGACG
* * * * * * * * *
3156431 ATCCCGAGGCTTGCGCGTTCCGCCCCTCTAGCCGACTGAGCGCCTGTACGCTCATTTCGTGGGTT
642 ATCCC-CGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* *
3156496 GACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATACCCAGTCTAAGATCGG
706 GACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
** * * *
3156561 ACCGGACCAACAGTTGCGACAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCGCATTTTTCTTT
771 ACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTC
** * * *
3156626 GTTGGAGCATCACTGGAGAACCTGACTGACGGCATTGGGGTTCCGACG
836 GCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* *
3156674 ATC--GGGGGCCGGGGGGTGTGCGCACATAATGTGCGATGGGTGCTCGTACTTGGCCCTTATATT
1 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
3156737 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTCAAGAGCATTTGATATTTTACA
66 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
3156802 GGTTTGCTGCCAGTAGCCACTAAAGTGTCTTG-AATGGGGACACTTTTTTCAAATGGTCACAAAA
131 GGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * * *
3156866 TCTTGTACACTACGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAATGAGCACA
195 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA-TACG
* * *
3156931 TCTACCTAGTTTGGGGCCAAAACTCCTTCC-AAAATAATTTAAAAAAATCCCAAACCGTAAAAAG
259 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-AATTTTAAAAAATCCCGAACCGTAAAAAG
* * *
3156995 TTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATTAAACTTCATGTGAAGGCTTAAA
323 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAG
* * * *
3157060 GGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAATATGTGCC
388 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
*
3157125 TAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTTTCTGGCCGGCGTAGTGC
453 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAGTGC
* * * * *
3157190 CAGCCCGCCCGTCTGCTCGTTTCGTCGGTAGGCTTAGGCATACGGAGTTCATTCCCAGTCTAACA
518 CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* ** * *** * *
3157255 TCAAACTAGACTGAGGGTTACAATAGCAAGATCGACAGCACGCAGAGGGTGACCCGACCGATCCC
583 TCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-CGATCCC
* * ** * * *
3157320 CGACTTGCGCGTCCCTTCCCTCTGGCTGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTA
647 CGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
3157385 GGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
712 GGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * ** * * *
3157450 GCAAGGGTAGCGGCAGCACATGCTGGGCTTGGGCGTGTGCTGGTGTCGCATTTTTCTTCGTCGGA
777 CCAAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGA
3157515 G
842 G
3157516 AACCTAACTG
Statistics
Matches: 4632, Mismatches: 554, Indels: 197
0.86 0.10 0.04
Matches are distributed among these distances:
869 1 0.00
870 203 0.04
871 56 0.01
872 201 0.04
878 323 0.07
879 37 0.01
880 100 0.02
881 38 0.01
882 645 0.14
883 228 0.05
884 136 0.03
885 136 0.03
886 382 0.08
887 386 0.08
888 355 0.08
889 101 0.02
890 7 0.00
891 43 0.01
892 472 0.10
895 2 0.00
897 1 0.00
898 167 0.04
899 79 0.02
900 164 0.04
901 2 0.00
902 4 0.00
903 1 0.00
904 1 0.00
909 1 0.00
910 4 0.00
911 1 0.00
913 76 0.02
914 279 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (883 bp):
ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATACGTC
TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGA
CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAGTGCCCG
CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
GACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACGATCCCCGGC
TTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGGA
TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAA
GGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGAGCAT
CGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
Found at i:3155663 original size:26 final size:26
Alignment explanation
Indices: 3155611--3155663 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3155601 GTTGACTTAG
*
3155611 GCATACGGAGTTCATTCTAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
* * *
3155637 GCATACGTAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
3155663 G
1 G
3155664 ATAGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:3157418 original size:26 final size:26
Alignment explanation
Indices: 3157388--3157438 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
3157378 TGACTTAGGG
3157388 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
3157414 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
3157439 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:3157706 original size:215 final size:215
Alignment explanation
Indices: 3157312--3157724 Score: 619
Period size: 215 Copynumber: 1.9 Consensus size: 215
3157302 GGTGACCCGA
* ** * * ** *
3157312 CCGATCCCCGACTTGCGCGTCCCTTCCCTCTGGCTGGCTGAGCGCCCGTACGCTCGTTTCATGGG
1 CCGATCCCCGACTTGCACGTCCCGCCCCTCTGGCCGGCTGAGCACCCACACACTCGTTTCATGGG
* *
3157377 TTGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
66 TTGACTTAGGGATACGGAGTTCATTCCCAGTCTAACCATACAGAGTTCATTCCCAGTCTAAGATC
* * * * **
3157442 GGACCGGAGCAAGGGTAGCGGCAGCACATGCTGGGCTTGGGCGTGTGCTGGTGTCGCATTTTTCT
131 GGACCGGACCAAGGGTAGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGCTACCGCATTTTTCT
3157507 TCGTCGGAGAACCTAACTGG
196 TCGTCGGAGAACCTAACTGG
* *
3157527 CCGATCCCTGGCTTGCACGTCCCGCCCCTCTGGCCGGCTGAGCACCCACACACTCGTTTCATGGG
1 CCGATCCCCGACTTGCACGTCCCGCCCCTCTGGCCGGCTGAGCACCCACACACTCGTTTCATGGG
* *
3157592 TTGACTTTGGGATATGGAGTTCATTCCCAGTCTAACCATACAGAGTTCATTCCCAGTCTAAGATC
66 TTGACTTAGGGATACGGAGTTCATTCCCAGTCTAACCATACAGAGTTCATTCCCAGTCTAAGATC
* **
3157657 GGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGTTATGTGCTGCTACCGCATTTTTCT
131 GGACCGGACCAAGGGTAGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGCTACCGCATTTTTCT
3157722 TCG
196 TCG
3157725 CTGGGCCACC
Statistics
Matches: 175, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
215 175 1.00
ACGTcount: A:0.17, C:0.29, G:0.28, T:0.26
Consensus pattern (215 bp):
CCGATCCCCGACTTGCACGTCCCGCCCCTCTGGCCGGCTGAGCACCCACACACTCGTTTCATGGG
TTGACTTAGGGATACGGAGTTCATTCCCAGTCTAACCATACAGAGTTCATTCCCAGTCTAAGATC
GGACCGGACCAAGGGTAGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGCTACCGCATTTTTCT
TCGTCGGAGAACCTAACTGG
Found at i:3158533 original size:26 final size:26
Alignment explanation
Indices: 3158503--3158553 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
3158493 TGACTTAGGG
3158503 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
3158529 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
3158554 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:3159416 original size:26 final size:26
Alignment explanation
Indices: 3159386--3159438 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3159376 GTTGACTTAG
3159386 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
3159412 GCATACGTAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3159438 G
1 G
3159439 ATAAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3159866 original size:891 final size:891
Alignment explanation
Indices: 3157527--3161299 Score: 5210
Period size: 891 Copynumber: 4.2 Consensus size: 891
3157517 ACCTAACTGG
* * * * * *
3157527 CCGATCCCTGGCTTGCACGTCCCGCCCCTCTGGCCGGCTGAGCACCCACACACTCGTTTCATGGG
1 CCGATCCCTGGCTTACGCGTCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
* * * *
3157592 TTGACTTTGGGATATGGAGTTCATTCCCAGTCTAACCATACAGAGTTCATTCCCAGTCTAAGATC
66 TTGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * *
3157657 GGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTC-GGTTATGTGCTGCTACCGCATTTTTC
131 GGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCAGG-CATGTGCTGGTGCCGCATTTTTC
* *
3157721 TTCGCTGGGCCACCATCACCGGAGCATTGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACG
195 TTCGC-GGGGCACCAT---C---G---T--CGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* * * * *
3157786 ATCGGGGCGATCG-GAGGGGTGTGCGCACATGATGTGTGATGGCTGCTGGTACTTGGCTCTTACA
248 ATCGGGG-GATCGAG-GGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
3157850 ATGGCCTCCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
311 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
3157915 CAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTTG-AATGGGGACACTTTTTTCAAATGGTCACAA
376 CAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
3157979 AATCTTGTACACTACGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAATGAGCA
440 AATCTTGTACACTACGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAGCA
* * * *
3158044 CATCTACCTAGTTTGGGGCCAAAACTCCTTCCAAAATAATTTAAAAAAATCCCAAACCGTAAAAA
505 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCGAACCGTAAAAA
*
3158109 GTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAA
570 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAA
* *
3158174 AGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAATATGTGC
635 AGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* *
3158239 CTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTTTCTGGCCGGCGTAGTG
700 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
*
3158304 CCAGCCCG-CC--C-GTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
765 CCCGCCCGCCCGTCTGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * *** * * *
3158365 TAACATCAAACTAGACTGAGGGTTACAATAGCAAGATCGACAGCACGCAGAGGGTGACCCGA
830 TAAGATCAGACCAGACTGAAGGTTGCGGCAACAAGATCGGCAGCACGCAGAGGGGGACCCGA
* * * ** *
3158427 CCGATCCCCGACTTGCGCGTCCCTTCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGG
1 CCGATCCCTGGCTTACGCGTCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
*
3158492 TTGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
66 TTGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* ** * * *
3158557 GGACCAGACCAAGGGTTGTTGCAACACATGCT-GGCTCAAGCATGTGCTGGTGCCACATTTTTCT
131 GGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCT
* * * * *
3158621 TCGC-CGG-AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCAGGGGG-CCG
196 TCGCGGGGCACCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGATCG
* *
3158683 -GGGGTTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATCGGCCCCCTATCC
260 AGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
3158747 CTTATCAAACCCCGAGAACTCACACCCCCTTAGAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
325 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* **
3158812 GTAGCAATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
390 GTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTAC
* * * * *
3158877 GATTTTTTAGATGAA-TTTTTTGTACATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTG
455 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAGCACGTCTACCAAGTTTG
* * *
3158941 GGGCCAAAAATCCTTCCAAAAAAATTAAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATG
520 GGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
* *
3159006 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
585 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTATGA
* * **
3159071 ATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTTTCTAAACCCACCTACC
650 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
3159136 ACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGCCAGCGTAGTGCCCGCCCGCCTGTCT
715 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCT
* * * *
3159201 GCCCGTTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTTCATTCCCAGTCTAAGATCAGACCAA
780 GTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG-TTCATTCCCAGTCTAAGATCAGACCAG
* *
3159266 ACTG-A-GTTGTGGCAACAGGATCGGCAGCACGCAGAGGGGGACCCGA
844 ACTGAAGGTTGCGGCAACAAGATCGGCAGCACGCAGAGGGGGACCCGA
* * * * * * *
3159312 TCGATCCCTGGCTTATGCATCCCACCCCTCTGGCCGACTAAGCGCTCGCACGCTCATTTCATGGG
1 CCGATCCCTGGCTTACGCGTCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
* * * *
3159377 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGTAGTTCATTCCCAGTGTAAGATA
66 TTGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * *
3159442 AGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGATGGTGCCGCATTTTTCT
131 GGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCT
* * * * *
3159507 TTGTCGGGGCACCATCGTCGGAGAACCTGACCGACGGCACTGGGGTTTCGGCGATCGGGGGGTCG
196 TCG-CGGGGCACCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGATCG
*
3159572 AAGGGGGTGTGCACACATGATGTGCGATGAGTGCTGGTACTTGGCCCTTATATTGG-CCCCTCAT
260 -AGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT-AT
* * * *
3159636 CTCTCATCAAACCTCGAGATCTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAC
323 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
** *
3159701 CAGTAGCCATTAAAGTGTCTTG-AATAAGGACACTTTTTTGAAATGGTCACAAAATCTTGTACAC
388 CAGTAGCCATTAAAGTGT-TTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
3159765 TACGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAA-AAAAATACAATGAGCACGTCTACCTAGT
452 TACGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAGCACGTCTACCAAGT
* * * *
3159829 TTGGGGACAAAACTCCTTCCGAAAGAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
517 TTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * *
3159894 ATAAAAAATAGAAAATGAGTCGTCTCGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTA
582 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTA
*
3159959 TGAATTTACAAGCCATAAAAATGGCATTAGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
647 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
3160024 ACCACCCTATCGTTCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGTGTAGTGCCCGCCCGCCCG
712 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * * *
3160089 CCCGTCCGCGCGTTTCGTCGGTTGGCTTAGGCTTACGAAGTTCATTCCCAGTCTAAGATCAGACC
777 TCTGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
** * * * * *
3160154 AGACTGAAGGTTGCGGCAGTAGGATCGGCAGCACGTAGACGGGGACCAGG
842 AGACTGAAGGTTGCGGCAACAAGATCGGCAGCACGCAGAGGGGGACCCGA
* * * * * * * * *
3160204 CCGATCCCCGGCTTGCGCGTCCCGCCTCTCTAGCCGACTGAGCGTCTGTACGCTCGTTTCATGGG
1 CCGATCCCTGGCTTACGCGTCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
* *
3160269 TTGACTTAGGGATACGGAGTTCATTCCCAGTCTAAACATATGGAGTTCATTCCCAGTCTAAGATC
66 TTGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
** ** * *
3160334 GGACCGGACCAACAGTTGCGATAGCACATGCTTGGCTCAAGCATGTGCTGGTGCCGCATTTTTCT
131 GGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCT
* * * * *
3160399 TTGCCGGAGCATCA-C-T-GGAGAACCTAACTGACGGCATTGGGGTTCCGACGATC----G---G
196 TCG-CGGGGCACCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGATCG
*
3160454 -GGGGGTGTGCGCACA-GAATGTGCGATGGGTGCT-GTACTTGGCCCTTATATTGGCCCCCTATC
260 AGGGGGTGTGCACACATG-ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
3160516 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
324 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
3160581 AGTAGCCATTAAAGTGTTTGCAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTT
389 AGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTA
* * *
3160646 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCCACCAAGTTT
454 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAGCACGTCTACCAAGTTT
* * * *
3160711 GGGGCCAAAACCCCTTCAAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
519 GGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
* *
3160776 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTTAAGGCTTCAAGGACCATTGTATG
584 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTATG
* *
3160841 AATTTAGAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCTACCTAC
649 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
*
3160906 CACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTC
714 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTC
* *
3160971 --T--GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAG
779 TGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * *
3161032 ACTGAAGGTTGCGGCAGCAAGATCAGCAGCACACAGAGGGGGCCCCGA
844 ACTGAAGGTTGCGGCAACAAGATCGGCAGCACGCAGAGGGGGACCCGA
* * * *
3161080 CCGAT-CCTCGACTTACGCGTCCCACCCCTCTGGCCGGCTGAGTGCCCGCACGTTCATTTCATGG
1 CCGATCCCT-GGCTTACGCGTCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGG
*
3161144 GCTGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
65 GTTGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * *
3161209 CGGACCGGAGCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTC
130 CGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTC
* * *
3161274 TTCGC-CGG-AGCATCGTCGAAGAACCT
195 TTCGCGGGGCACCATCGTCGGAGAACCT
3161300 AACTGGCCGG
Statistics
Matches: 2536, Mismatches: 309, Indels: 80
0.87 0.11 0.03
Matches are distributed among these distances:
873 3 0.00
874 2 0.00
875 4 0.00
876 271 0.11
878 4 0.00
879 174 0.07
880 300 0.12
882 279 0.11
883 186 0.07
884 3 0.00
885 210 0.08
886 69 0.03
887 28 0.01
888 7 0.00
889 74 0.03
890 37 0.01
891 475 0.19
892 230 0.09
893 1 0.00
896 4 0.00
897 1 0.00
899 29 0.01
900 145 0.06
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (891 bp):
CCGATCCCTGGCTTACGCGTCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
TTGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
GGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCT
TCGCGGGGCACCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGATCGA
GGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACG
AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAGCACGTCTACCAAGTTTGG
GGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCTG
TCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
TGAAGGTTGCGGCAACAAGATCGGCAGCACGCAGAGGGGGACCCGA
Found at i:3161186 original size:26 final size:26
Alignment explanation
Indices: 3161156--3161206 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
3161146 TGACTTAGGG
3161156 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
3161182 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
3161207 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:3161357 original size:193 final size:193
Alignment explanation
Indices: 3161109--3161471 Score: 618
Period size: 193 Copynumber: 1.9 Consensus size: 193
3161099 TCCCACCCCT
* **
3161109 CTGGCCGGCTGAGTGCCCGCACGTTCATTTCATGGGCTGACTTAGGGATACGGAGTTCATTCCCA
1 CTGGCCGGCTGAGCGCCCGCACACTCATTTCATGGGCTGACTTAGGGATACGGAGTTCATTCCCA
* *
3161174 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAGCAAGGGTTGCGGCAGCACAT
66 GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACAT
* * *
3161239 GCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGAGCATCGTCGAAGAACCTAA
131 GCTGGGCTCAGGCATGTGCTGCTGCCGCATTTTTCTTCGCCGGAGCATCGTCGAAGAACCTAA
* * *
3161302 CTGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTTGGGATACGGAGTTCATTCCCA
1 CTGGCCGGCTGAGCGCCCGCACACTCATTTCATGGGCTGACTTAGGGATACGGAGTTCATTCCCA
*
3161367 GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGCGGCAGCACAT
66 GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACAT
3161432 GCTGGGCTCAGGCATGTGCTGCTGCCGCATTTTTCTTCGC
131 GCTGGGCTCAGGCATGTGCTGCTGCCGCATTTTTCTTCGC
3161472 TGGGCCACCA
Statistics
Matches: 158, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
193 158 1.00
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (193 bp):
CTGGCCGGCTGAGCGCCCGCACACTCATTTCATGGGCTGACTTAGGGATACGGAGTTCATTCCCA
GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACAT
GCTGGGCTCAGGCATGTGCTGCTGCCGCATTTTTCTTCGCCGGAGCATCGTCGAAGAACCTAA
Found at i:3161383 original size:26 final size:26
Alignment explanation
Indices: 3161349--3161399 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3161339 TGACTTTGGG
*
3161349 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
3161375 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
3161400 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:3162272 original size:26 final size:26
Alignment explanation
Indices: 3162242--3162294 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3162232 GATGACTTAG
3162242 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3162268 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3162294 G
1 G
3162295 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3164350 original size:723 final size:717
Alignment explanation
Indices: 3162268--3165154 Score: 4112
Period size: 715 Copynumber: 4.0 Consensus size: 717
3162258 CCCAGTCTAA
* *
3162268 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* * ** * *
3162333 CTCAGGCATGTGCTGGTGCAGCATTTATCTT-GTCGGGGCACCATCGTCGGAGCATCGTCGAAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCGTCGGAGA
* *
3162397 ACCTTACCGGCGGCATTGCGA-TTCCGGCGATCGGGGGGCCA-GGGGTGT-CGCACATGATGTGC
131 ACCTGACCGACGGCATTG-GAGTTCCGGCGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
*
3162459 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAGACCTCGAGAACTCAC-
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
3162523 ACCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTACCCATTAAAGTGTCTGAAATG
260 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
3162588 GGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGA
325 AGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
3162653 GCATGCCAACAAAAATACAAGGATCACATCTACCTAGTTTTGGGCCAAAACTCCTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
3162718 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTG
* * *
3162783 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCAATAACAATGGTAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCAT
* * * *
3162848 TGGCATGGAGAAATATGAATATGTTCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
3162913 ATCCCGTCTCTCTGGCC-AGCATAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCTTCGGTTGGC
650 ATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCTTCGGTTGGC
3162977 TTAG
714 TTAG
* * * * * *
3162981 GCATACGAAGTTCAGT-CCAGTCTAAGATCGGAACGGATCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* * * * ** * *
3163045 CTCAGGCATGTGCTGGTACCGTAATTTTCTTCGTC-GCGCACCATTGCCGAAGCA-CTGCCAGAG
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGAAGCATC-GTCGGAG
* * * * *
3163108 AACCTGACCGACGGCACTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGTGCCCATGATGTGC
130 AACCTGACCGACGGCATTGGAGTTCCGGCGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
*
3163173 GATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
3163238 CCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATG
260 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
3163303 GGGACACTTTTTTCAAATGGTCAAAAAAT-TTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
325 AGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
3163367 GCATGCCAACAAAATTACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTACCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
3163432 TTTTAAAAAATCTCGAACCGTAAAAGGTTTCAAAAATCGTGAAAAAATTGAAAACAAGTCGTCTT
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG-AAAAATAGAAAACAAGTCGTCTT
* *
3163497 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCATTAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCA
* * * *
3163562 TTGGCATGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCTTATCGATCTACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
3163627 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
649 CATCCCGTCTCTCTGGCCGACGTAGTGCCCG----CCCGCCCGCCCGCCCGCTCGTTTCTTCGGT
*
3163692 TGACTTAG
710 TGGCTTAG
** ** *
3163700 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGG
* * * * *
3163765 CTCGGGCATGTGCTGGTGCCGCCTTTTTCTTCCTCGGGGTAGCATCACCGAAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCGTCGGAGA
* * ** *
3163830 ACCTGATCGACGGCATTGGAGTTCCGACGATCGAGGGGGCCAGGGGGTGCACGCACATGATGTGT
131 ACCTGACCGACGGCATTGGAGTTCCGGCGATCG-GGGGGCCAGGGGGTGTGCGCACATGATGTGC
* * ** * *
3163895 GATGGGTGCTGGTACTTGGTCCTCATATTGGCCTGCTATCTCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
3163960 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTGGGCATTAAAGTGTCTGACATG
260 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
3164025 AGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTCAGCTGATTTTTTTTTG
325 AGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTTG
* * *
3164090 TGCATGCCAAGAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * ** * * *
3164155 ATTTTGAAAAATCCCAAACCGTAAAAAATTTTGAAAATTGTGAAAAATAGAAAACGAGTCATCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTT
* **
3164220 GCCATGAACCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCCTAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCA
**
3164285 TTGGCAAACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
3164350 CATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCCCGTTCATTTCTTCGGCTGGC
649 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCTTCGGTTGGC
3164411 TTAG
714 TTAG
* *
3164415 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGACCGAGGGTTACGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGG
*
3164480 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCCACCATCACC-AGAGCATCGTCGGAG
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGA-AGCATCGTCGGAG
* * * * *
3164544 AACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACTTGATGTG
130 AACCTGACCGACGGCATTGGAGTTCCGGCGATC-GGGGGGCCAGGGGGTGTGCGCACATGATGTG
*
3164609 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
3164674 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTAAAAT
259 AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
3164739 GAGGACACTTTTTTCAATTGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTG
324 GAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * **
3164804 TGCATGGCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCGAAACTCCTTCTAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
3164869 ATTTTAAAAAGTCCTGAACTGTAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACAAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTT
*
3164934 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAATGC-ATAAAAATGGC
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA-GCAATAAAAATGGC
* *
3164998 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCATGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
3165063 GCATCCCGCCTCTCTGGCCGGCGTAGT--------GCCCGCCCGCCCGCTTGTTTCATCGATTGG
648 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCTTCGGTTGG
3165120 CTTAG
713 CTTAG
*
3165125 GCATACGGAGTTCATTCCTAGTCTAAGATC
1 GCATACGGAGTTCATTCCCAGTCTAAGATC
3165155 AAACCAGAAT
Statistics
Matches: 1931, Mismatches: 222, Indels: 45
0.88 0.10 0.02
Matches are distributed among these distances:
710 57 0.03
711 2 0.00
712 123 0.06
713 23 0.01
714 470 0.24
715 626 0.32
716 2 0.00
719 50 0.03
720 72 0.04
721 49 0.03
722 169 0.09
723 187 0.10
724 101 0.05
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (717 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGAGTTCCGGCGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAA
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGA
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCTTCGGTTGGCTT
AG
Found at i:3165325 original size:26 final size:26
Alignment explanation
Indices: 3165285--3165336 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
3165275 TTGACTTAGA
*
3165285 CATACGGAGTGCATTCCCAGTCTAAG
1 CATACAGAGTGCATTCCCAGTCTAAG
*
3165311 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTGCATTCCCAGTCTAAG
3165337 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACAGAGTGCATTCCCAGTCTAAG
Found at i:3166200 original size:26 final size:26
Alignment explanation
Indices: 3166171--3166223 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3166161 GTTGACTTAG
*
3166171 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATTCCCAGTCTAA
*
3166197 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATTCCCAGTCTAA
3166223 G
1 G
3166224 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATAAGAAGTTCATTCCCAGTCTAA
Found at i:3166709 original size:899 final size:900
Alignment explanation
Indices: 3164415--3169598 Score: 6480
Period size: 885 Copynumber: 5.8 Consensus size: 900
3164405 GCTGGCTTAG
* * * *
3164415 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGACCGAGGGTTACGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
3164480 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCCACCATCACCAGAGCATCG-TCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCT-GGAG
* *
3164544 AACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACTTGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
3164608 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
3164673 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTAAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAA
* * *
3164738 TGAGGACACTTTTTTCAATTGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * **
3164803 GTGCATGGCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGG-CCGAAACTCCTTCTAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCCAAAACTCCTTCCGAAA
* * * * *
3164867 AAATTTTAAAAAGTCCTGAACTGTAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACAAGTCGTC
455 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
3164932 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAATG-CATAAAAATG
520 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA-GCCATAAAAATG
*** * *
3164996 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCATGGCTT
584 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
3165061 GCGCATCCCGCCTCTCTGGCCGGCGTAGT----GCCCG-CCCGCCCGCTTGTTTCATCGATTGGC
649 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGC
* * *
3165121 TTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCAGAA-TGAGGGTTGCGGCAGCAAGAT
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCA-AACTGA-GGTTGAGGCAGCAGGAT
* * * * **
3165185 CGACAGCACGCAGAGGGGGACCCGA-CTGATCCTCGACTTACACATCCCACCCCTCTGGCCAACT
777 CGACAGCACGTAGAGGGGGACCCGATC-GATCC-CCACTTACGCATCCCGCCCCTCTGGCCGGCT
* * *
3165249 GAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGACATACGGAGTGCATTCCCAGTCTAA
840 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *** * *
3165310 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTGGCACATCCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
3165375 ATCGGGCATGTGTTGGTGCCACATTTTTCTTCATCGGGGCACCATCG-C----CA------GAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCTGGAGA
* * *
3165429 ACCTGACCCGCGGCATTGGGGTTCCGGCGATCGGGGGGGTCGGAGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * * *
3165494 GGATGGGTGCTGGAAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCAAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
3165559 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TTGAAA
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTT-AAA
* * *
3165623 TGGGGACACTTTTTTCAAATGGTCAGAAAATCTTATACACTTCGCGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
3165688 GTGCATGCCAACAAAAATA-AGAGGATCAAGTCTGCCAAGTTTAGGG-CCAAAACTCCATCCGAA
390 GTGCATGCCAACAAAAATACA-AGGATCACGTCTACCAAGTTTGGGGTCCAAAACTCCTTCCGAA
* *
3165751 AGAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
454 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
3165816 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTAACAAGCTAGAAAAATG
519 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** *
3165881 GCATTGTTACATAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
584 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * **
3165946 ACGCATCCCGTCTCTCTGGCCAGCGTAGTGCCAGCCCG-CCCACCCGCTCGTTTCGTAAGTTGGC
649 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * *
3166010 ATAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTAAACCGA-GTTGAGGTAGCAGGATCG
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAAACTGAGGTTGAGGCAGCAGGATCG
* * * * * * * * *
3166074 GCAGCACGCAGAGGGGCACCCGATTGATCCCCATCTTACACATCCTGCCCCTATGGCCGGCCGAA
779 ACAGCACGTAGAGGGGGACCCGATCGATCCCCA-CTTACGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
3166139 CGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
843 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
3166197 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGCACTTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * ** * *
3166262 GTTGGGCAAGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCGGAGCGTCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCTGGAGA
* *
3166327 ACCTGACCGGCGGTC-TTGGGGTTCCGGCGATCAGGGGGGCCGAGGGGGGTGTGGGCACATGATG
131 ACCTGACCGGCGG-CATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATG
* * * * *
3166391 TCCGATTGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCAAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
3166456 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTCGCCATTAAAGTGTCTTAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAA
* *
3166521 ATGGGGACATTTTTTTCAAATGGTCACAAAAT-TTGTACACTTCAAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
3166585 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTGCCAAG-TTGGGGTCCAAAACTCCTTCTGAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCCAAAACTCCTTCCGAA
* * * *
3166649 AAAATTTTAACAAATCCCAAACCGTAAAAAGTTCCAAAAATCATGAAAAATAAAAAAACGAGTCG
454 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT-AGAAAACGAGTCG
3166714 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
518 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * *
3166779 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCAATCCACGGCT
583 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
3166844 TGCGCATCCCGTCTCTCTAGCCAGCGTAGTACCCGCCCGCCTGCCCGCCCACTCGTTCCGTCGGT
648 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-C--CCCGCCCGCTCGTTTCGTCGGT
* * **
3166909 TGGCTTAGGCATACGAAGTTTATTCCCAGTCTAAGAT-AAGA-CAAGACCAAGGGTT-ACGGCAG
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAA-ACCAA-ACTGA-GGTTGA-GGCAG
* * * * * * ** * *
3166971 CAAGTTTGAAAGCACATAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGG
771 CAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCC-CACTTACGCATCCCGCCCCTCTGGC
* * * *
3167036 AGGCTGAGCGCCCGCACGCTCATTTCGTGTGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTA
835 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
3167101 A
900 A
*
3167102 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* ** * * *
3167167 CTC-TGCAATGTGCTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCGCCGGAGTATCACTGGAG
66 CTCGGGC-ATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCTGGAG
* *
3167231 AACCTGACCGGCGGCATTGGGGTTCCGGCAATCGGGGGGGCCGGGGGGGTGTGCGCACGTGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
3167296 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
3167361 CACCCCC-TAGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTATCCATTAAAGTGTCTGAA
260 CACCCCCTTA-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAA
3167425 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCGAGTTTTTAGCTGAATTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-CGAGTTTTTAGCTGAATTTTT
3167490 TTGTGCATG-CAAC----A-A-AA--AT-A---CT-CC-----T----TCC---A---------A
388 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCCAAAACTCCTTCCGA
* * *
3167520 AAAAATTTTAAAAAATCCTGAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
453 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
3167585 TCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAGAAAT
518 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * * *
3167650 GGCATTGGCACACAGCAATATAAAGATGTGCCGAAACCCACCTACCACCCTATCGCTCCACAGCT
583 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
3167715 TGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCGGTCCGCCCGCACGCTCGCTCGTTTCGTCGGT
648 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CC-C-CGCCCGCTCGTTTCGTCGGT
* * * *** * * * ***
3167780 TGGCTTAGGCATACGGAGTTCATTCCTAGTCTCAGATCGAACTGGATTGAGGGTCACAAAAGCAG
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAAACTGAGGTTGA-GGCAGCAG
* *
3167845 GATCGACAAG-ACGTAGAGGGGCACCCGGTCGATCCCCGACTTGA-GCATCCCGCCCCTCTGGCC
774 GATCGAC-AGCACGTAGAGGGGGACCCGATCGATCCCC-ACTT-ACGCATCCCGCCCCTCTGGCC
* * * *
3167908 GGCTGAGTGCCCGCACGCTCGTTACATGGGTTGACTTAGGCATATGGAGTTCATT-CC---C-AA
836 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
3167968 TC-TA---AG---A-T--C-G-----GATC--A--A-ACCGAGGGTTGCGGCAGCACATATTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
** * *
3168012 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCTGGAGA
* * * * * *
3168077 ACCTGACCGGCGGTATTGGGGTTCCGACAATCGAGGGGGCC-AGGGGGTGTGCGCAAATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
3168141 CAATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
3168206 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCCA-TAGCCATTAAAGTGT-TTGAA
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTT-AA
*
3168269 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATATTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTT
* * * * *
3168334 TT-TGCATGCCAACAAAAATACAAGGATCATGTATACCACGTTTGGGGT-GAAAAGTCCTTCCGA
388 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCCAAAACTCCTTCCGA
* * ** *
3168397 AAAAATTTTAAAGAATCCCGAACTGTAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCG
453 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * *
3168462 TCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTCCAAGCCATAAAACT
518 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
3168527 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
583 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
3168592 TACGCTTCCCGTCTCTCTGGCTGGTGTAATGCCCGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGA
648 TGCGCATCCCGTCTCTCTGGCCGGCGT-A-G--TGCCCGCCCG-CC--CCGCCCGCTCGTTTCGT
* * *
3168657 CGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCA-GC
706 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAAACTGA-GGTTG-AGGC
* * ** *
3168721 AGCAGGATCGACAGCACATAGAGGGGGACCCGATCGATGCACGGCTTACGGATCCCGCCCCTCTG
769 AGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGAT-CCCCACTTACGCATCCCGCCCCTCTG
* *
3168786 GCCGGCTGAGCGCCCACACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
833 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
3168851 TAA
898 TAA
* * **
3168854 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGATCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * * *
3168919 CTCGGGCATGTGCTAGTGTCATATTTTTCTTTG-CTGGGGCACCATCGTCGGAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGCTGGAG
* * * ** *
3168983 AACCTGGCTGGCGGCATTAGGGTTCCAACGATCTGGGGGGCCGGGGGGGCTGTGCGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGG-TGTGCGCACATGATG
* * * *
3169048 TACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTTTCCCTCATCAAACCTTGAGAACAC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * * *
3169113 ACGCTCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGTTGCCTGTAGCCATTAAAGTGTCTTGA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAA
* * *
3169178 ATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCAAG-TTGTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** *
3169242 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGCACCAAAACTCCTTCCAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCCAAAACTCCTTCCGAA
* * * *
3169306 AAAAGTTTAAAAAATCTCGAACC-CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGCCGT
454 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * * *
3169370 CTTGCCATGAAACTGCACGTGAAGGGTTACGGGACCATTGTATGAATTTACATGCCATAAAAATG
519 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
3169435 GCATTGGCACGTAGAAATATGAAGATGTGCCAAAACCCACCAACCATCCTATCGATCCACGGCTT
584 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
3169500 GCGCATCCCGCCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTT
649 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CC-CC-GCCCGCTCGTTTCGTCGGTT
3169565 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
3169599 CATATGGAGT
Statistics
Matches: 3711, Mismatches: 443, Indels: 262
0.84 0.10 0.06
Matches are distributed among these distances:
843 21 0.01
844 188 0.05
845 124 0.03
846 3 0.00
848 2 0.00
849 1 0.00
850 6 0.00
852 2 0.00
853 1 0.00
855 1 0.00
856 2 0.00
857 2 0.00
858 1 0.00
859 1 0.00
862 3 0.00
865 2 0.00
866 4 0.00
867 1 0.00
868 1 0.00
869 1 0.00
870 6 0.00
871 320 0.09
872 50 0.01
877 200 0.05
878 1 0.00
879 1 0.00
880 3 0.00
881 173 0.05
882 8 0.00
883 1 0.00
884 48 0.01
885 453 0.12
886 5 0.00
887 214 0.06
888 4 0.00
889 63 0.02
890 4 0.00
892 3 0.00
893 3 0.00
894 2 0.00
895 96 0.03
896 2 0.00
897 8 0.00
898 167 0.05
899 338 0.09
900 3 0.00
901 1 0.00
902 9 0.00
903 122 0.03
904 173 0.05
905 274 0.07
906 32 0.01
907 299 0.08
908 86 0.02
909 170 0.05
910 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCTGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCCAAAACTCCTTCCGAAAA
AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAAACTGAGGTTGAGGCAGCAGGATCGAC
AGCACGTAGAGGGGGACCCGATCGATCCCCACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:3167112 original size:26 final size:26
Alignment explanation
Indices: 3167076--3167128 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3167066 GTTGACTTAG
3167076 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
3167102 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
3167128 G
1 G
3167129 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:3168864 original size:26 final size:26
Alignment explanation
Indices: 3168828--3168880 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3168818 GTTGACTTAG
3168828 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3168854 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3168880 G
1 G
3168881 ATCGGACTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3169608 original size:26 final size:26
Alignment explanation
Indices: 3169572--3169650 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
3169562 GTTGGCTTAG
*
3169572 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
3169598 GCATATGGAGTTCATTCCCAGTATAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
3169624 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
3169650 G
1 G
3169651 ATTGGACCAG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:3170230 original size:757 final size:766
Alignment explanation
Indices: 3168828--3170363 Score: 2242
Period size: 757 Copynumber: 2.0 Consensus size: 766
3168818 GTTGACTTAG
* * *
3168828 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGAT
1 GCATACGGAGTTCATTCCCAGTATAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
** * * *
3168893 CGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTAGTGTCATATTTTTCTTTGCTGGGG
66 CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCACGTGCTAGTGCCACATTTTTCTTTGCTGGGG
* * *
3168958 CACCATCGTCGGAGCATCACCGGAGAACCTGGCTGGCGGCATTAGGGTTCCAACGATCTGGGGGG
131 CACCATCGTCGAAGCATCACCGGAGAACCTGACCGGCGGCATTAGGGTTCCAACGATCTGGGGGG
* *
3169023 CCGGGGGGGCTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
196 CCGAGGGGGCTGTGCGCACATCATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * * *
3169088 TTCCCTCATCAAACCTTGAGAACACACGCTCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGTT
261 ATCCCTCATCAAACCTCGAGAACACACACTCCC------A-CA-TTGAGATTTTACAGGTTTGCT
3169153 GCCTGTAGCCATTAAAGTGTCTTGAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACA
318 GCCTGTAGCCATTAAAGTGTCTTGAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACA
3169218 CTTCAAGTTGTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
383 CTTCAAGTTGTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
*
3169283 TTGGCACCAAAACTCCTTCCAAAAAAAGTTTAAAAAATCTCGAACCCAAAAAGTTTCAAAAATCA
448 TTGGCACCAAAACTCCTTCCAAAAAAAGTTTAAAAAATCTCAAACCCAAAAAGTTTCAAAAATCA
* * *
3169348 TGAAAAATAGAAAACGAGCCGTCTTGCCATGAAACTGCACGTGAAGGGTTACGGGACCATTGTAT
513 TGAAAAATAGAAAACGAACCGTCTTGCCATGAAACTGCACGTGAAGGCTTAAGGGACCATTGTAT
*
3169413 GAATTTACATGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCAAAACCCACCAA
578 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCAAAACCCACCAA
* * *
3169478 CCATCCTATCGATCCACGGCTTGCGCATCCCGCCTCTTTGGCCGGCGTAGT-GCCCGCCCGCCCG
643 CCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCCTAGTCGCCCGCCCGCCCG
3169542 CCTG-C-C-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
708 CCTGCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
3169598 GCATATGGAGTTCATTCCCAGTATAAGCATATGGAGTTCATTCCTAGTCTAAGATTGGACCAGAC
1 GCATACGGAGTTCATTCCCAGTATAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
*
3169663 CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCACGTGCTGGTGCCACATTTTTC-TT-CATCGG
66 CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCACGTGCTAGTGCCACATTTTTCTTTGC-T-GG
* * * ***
3169726 GGCACCATCGTC-AAGCATCGCCGGAGAACCTGACCGGTGGCATTGGGGTTCCGGTGATC-GGGG
129 GGCACCATCGTCGAAGCATCACCGGAGAACCTGACCGGCGGCATTAGGGTTCCAACGATCTGGGG
* *
3169789 GGCCGAGGGGG-TGTGCGCACATCATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCC
194 GGCCGAGGGGGCTGTGCGCACATCATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
3169853 CTATCCCTCATCAAACCTCGAGAACTCACAC-CCC-C-TTGAGATTTTACAGGTTTGCTG-CTAG
259 CTATCCCTCATCAAACCTCGAGAACACACACTCCCACATTGAGATTTTACAGGTTTGCTGCCT-G
*
3169914 TAGCCATTAAAGTGT-TTGGAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTATACTTC
323 TAGCCATTAAAGTGTCTT-GAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTC
* * *
3169978 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-ACAAAATACAAGGATCACGTCTACCCAGTTT
387 AAG-TTGTAGCTGAATTTTTTTGTGCATGCCAACA-AAAATACAAGGATCACGTCTACCAAGTTT
* * * * * * *
3170042 GG-GCCAAAACTCCTTCCGAAAAAATTTTAACAAATCTCAAACCGTAAAAAGTTTCTAAAATCGT
450 GGCACCAAAACTCCTTCCAAAAAAAGTTTAAAAAATCTCAAACC-CAAAAAGTTTCAAAAATCAT
* *
3170106 GAAAAATAGAAAAC-AACTCGTCTTGCCATGAAACTTCACGTGAAGTCTTAAGGGACCATTGTAT
514 GAAAAATAGAAAACGAAC-CGTCTTGCCATGAAACTGCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
3170170 GAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTA
578 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCAAAACCCACCAA
*
3170235 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCCTAGTGCCCGCCCGCCCGC
643 CCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCCTAGT---CGCCCGCCCGC
* *
3170300 CCGCCTGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAA
705 CCGCCTG-CCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
3170363 G
1 G
3170364 ATCAGACCAG
Statistics
Matches: 691, Mismatches: 59, Indels: 37
0.88 0.07 0.05
Matches are distributed among these distances:
755 4 0.01
756 122 0.18
757 239 0.35
758 1 0.00
761 17 0.02
763 1 0.00
764 1 0.00
765 49 0.07
766 3 0.00
767 77 0.11
768 15 0.02
769 41 0.06
770 121 0.18
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (766 bp):
GCATACGGAGTTCATTCCCAGTATAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCACGTGCTAGTGCCACATTTTTCTTTGCTGGGG
CACCATCGTCGAAGCATCACCGGAGAACCTGACCGGCGGCATTAGGGTTCCAACGATCTGGGGGG
CCGAGGGGGCTGTGCGCACATCATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
ATCCCTCATCAAACCTCGAGAACACACACTCCCACATTGAGATTTTACAGGTTTGCTGCCTGTAG
CCATTAAAGTGTCTTGAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCAAGT
TGTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCACC
AAAACTCCTTCCAAAAAAAGTTTAAAAAATCTCAAACCCAAAAAGTTTCAAAAATCATGAAAAAT
AGAAAACGAACCGTCTTGCCATGAAACTGCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCAAAACCCACCAACCACCCTA
TCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCCTAGTCGCCCGCCCGCCCGCCTGCCGC
TCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:3171384 original size:26 final size:26
Alignment explanation
Indices: 3171355--3171407 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3171345 GTTGACTTAG
*
3171355 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
3171381 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3171407 G
1 G
3171408 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:3172342 original size:162 final size:160
Alignment explanation
Indices: 3172070--3172451 Score: 480
Period size: 162 Copynumber: 2.4 Consensus size: 160
3172060 CCGCCTGTCC
* * * * * *
3172070 GCCGCCCGCCCGCTCGTTTGGTCGATTGGCTTAGGCATACAGAGTGCATTCTCAGTCTAAGCTCA
1 GCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * *
3172135 GACAGGACCGAAGGTTGCGGCAGCAGGATCGGCAGCACATAGAGGGGGACCCGACCGATCCCCGA
66 GACAGGACCGAAGGTTGCGACAGCAAGATCGGCAGCACATAGAGGGGGACCCGACCGATCCACGA
*
3172200 CTTGCACATCCCGCCCCTCTGGCCGGCGTAGT
131 CTTGCACATCCCGCCCCTCTGGCCGGC-T-GA
* *
3172232 GCCGCCCGCCCGCTCGTTTCGACGGTTGGCTTAGGCATACGGACTTCATTCCCAGTCTAAGATCA
1 GCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * *
3172297 GACCA-GACTGAAGGTTGTGATAGCAAGATTGGCAGCACGTAGAGGGGGACCCGACCGATCCACG
66 GA-CAGGACCGAAGGTTGCGACAGCAAGATCGGCAGCACATAGAGGGGGACCCGACCGATCCACG
* * *
3172361 GCTTGCGCATCCCGCCCCTCTGGTCGGCTGA
130 ACTTGCACATCCCGCCCCTCTGGCCGGCTGA
* * * * * * *
3172392 G-CACCCGCACGCTCGTTTCGTTGGTTGACTTAAGCATACGGAGTTTATTCCTAGTCTAAG
1 GCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
3172452 CATACGGAGT
Statistics
Matches: 190, Mismatches: 29, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
159 50 0.26
160 2 0.01
161 1 0.01
162 135 0.71
163 2 0.01
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.21
Consensus pattern (160 bp):
GCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
GACAGGACCGAAGGTTGCGACAGCAAGATCGGCAGCACATAGAGGGGGACCCGACCGATCCACGA
CTTGCACATCCCGCCCCTCTGGCCGGCTGA
Found at i:3172451 original size:26 final size:26
Alignment explanation
Indices: 3172422--3172475 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
3172412 TTGGTTGACT
* *
3172422 TAAGCATACGGAGTTTATTCCTAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
3172448 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
3172474 TA
1 TA
3172476 TGATCGGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:3172947 original size:26 final size:26
Alignment explanation
Indices: 3172917--3172968 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
3172907 GTTGACTTAG
*
3172917 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3172943 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3172969 AATCAGACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3173296 original size:492 final size:486
Alignment explanation
Indices: 3172338--3173287 Score: 1303
Period size: 492 Copynumber: 1.9 Consensus size: 486
3172328 GCAGCACGTA
* * * * *
3172338 GAGGGGGACCCGACCGATCCACGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCACCCGCACG
1 GAGGGGGACCCGACCGATCCACGGCTTGCACATCCCACCACTCTGGTCGACAGAGCACCCGCACG
* * * * * *
3172403 CTCGTTTCGTTGGTTGACTTAAGCATACGGAGTTTATTCCTAGTCTAAGCATACGGAGTTCATTC
66 CTCGTTTCATGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTC
** * **
3172468 CCAGTCTATGATCGGACCAGACCGAGGGTTACGGTAGCACATGCTGGGCTTGGGCATGTGCTGGT
131 CCAGTCTAAAATCAGACCAGACCGAGGGTTACGGTAGCACATGCTGGGCTCAGGCATGTGCTGGT
**
3172533 GCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATTGCCGGAGAACCTGACCGACGGCATT
196 GCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATT
* * * * *
3172598 GTGGTTCTGGCGATCGGGGGGACCAGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTT
261 GTGGTTCCGACGATCGGGGGGACCAGGGGGTGTACGCACACGATGTGCGATAGGTCCTGGTACTT
*
3172663 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
326 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
3172728 TGAGATTTTACAAGTTTGTTGCCAGTAGCCAATAAAGTGTTTGAAATGGGGACACTTTTTTCAAA
391 TGAGATTTTACAAGTTTGCTGCCAGTAGCCAATAAAGTGTTTGAAATGGGGACA--TGTTT---A
3172793 TGGTCCCAAAATCTTGTAAATTTTGAGAACTCACACG
451 T-GTCCCAAAATCTTGTAAATTTTGAGAACTCACACG
* * *
3172830 GAGGGGGACCCGGCCGATCCTCGGCTTGCACATCCCACCACTCTGGTCGACAGAGCGCCCGCACG
1 GAGGGGGACCCGACCGATCCACGGCTTGCACATCCCACCACTCTGGTCGACAGAGCACCCGCACG
* *
3172895 CTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTC
66 CTCGTTTCATGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTC
*
3172960 CCAGTCTAAAATCAGACCAGACCGAGGGTTACGGTAGCACATGTTGGGCTCAGGCATGTGCTGGT
131 CCAGTCTAAAATCAGACCAGACCGAGGGTTACGGTAGCACATGCTGGGCTCAGGCATGTGCTGGT
* ** * *
3173025 GCCGCATTTTTCTTTGCTGGGGTGCCATCACCGGAGCATCGTCGGAGCATCACCGGAGAACCTGA
196 GCCACATTTTTCTTCAC-CGGG-G----CA-C----CATCGCCGGAGCATCACCGGAGAACCTGA
** *
3173090 CCGACGGCATTAG-GGTTCCGACGATCGGGGGGGTC-GGGGGTGTACGCACACGATGTGCGATGG
250 CCGACGGCATT-GTGGTTCCGACGATCGGGGGGACCAGGGGGTGTACGCACACGATGTGCGATAG
* * **
3173153 GTCCTGGTACTTGGCTCTTATATTGTCCCCCTATCCCTCATCAAATGTCGAGAACTCACACCCCC
314 GTCCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
3173218 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGAC
379 TTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCAATAAAGTGTTTGAAATGGGGAC
3173283 A-GTTT
444 ATGTTT
3173288 TTCCAAAATG
Statistics
Matches: 400, Mismatches: 46, Indels: 17
0.86 0.10 0.04
Matches are distributed among these distances:
492 187 0.47
493 3 0.01
494 1 0.00
498 2 0.00
499 4 0.01
502 147 0.37
503 55 0.14
504 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.25
Consensus pattern (486 bp):
GAGGGGGACCCGACCGATCCACGGCTTGCACATCCCACCACTCTGGTCGACAGAGCACCCGCACG
CTCGTTTCATGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTC
CCAGTCTAAAATCAGACCAGACCGAGGGTTACGGTAGCACATGCTGGGCTCAGGCATGTGCTGGT
GCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATT
GTGGTTCCGACGATCGGGGGGACCAGGGGGTGTACGCACACGATGTGCGATAGGTCCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAAGTTTGCTGCCAGTAGCCAATAAAGTGTTTGAAATGGGGACATGTTTATGTCC
CAAAATCTTGTAAATTTTGAGAACTCACACG
Found at i:3175653 original size:26 final size:26
Alignment explanation
Indices: 3175616--3175665 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
3175606 TTTGACTTAG
3175616 GCATACGAAGTTCATTCCCAGTCTGA
1 GCATACGAAGTTCATTCCCAGTCTGA
*
3175642 GCATAC-AGAGTTCATTCCTAGTCT
1 GCATACGA-AGTTCATTCCCAGTCT
3175666 AAGATCAGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTGA
Found at i:3176110 original size:902 final size:899
Alignment explanation
Indices: 3172830--3180883 Score: 10288
Period size: 903 Copynumber: 9.0 Consensus size: 899
3172820 AACTCACACG
* * * * * * * * *
3172830 GAGGGGGACCCGGCCGATCCTCGGCTTGCACATCCCACCACTCTGGTCGACAGAGCGCCCGCACG
1 GAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * *
3172895 CTCGTTTCATGGGTTGACTTAGGCATA-TAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
66 CTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * * *
3172959 CCCAGTCTAAAATCAGACCAGACCGAGGGTTACGGTAGCACATGTTGGGCTCAGGCATGTGCTGG
130 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * *
3173024 TGCCGCATTTTTCTTTGCTGGGGTGCCATCACCGGAGCATCGTCGGAGCATCACCGGAGAACCTG
195 TGCCACATTTTTCTTCG-TCGGG-G----CA-C----CATCGTCGGAGCATCACCGGAGAACCTG
* * * *
3173089 ACCGACGGCATTAGGGTTCCGACGATCGGGG-GG-GTCGGGGGTGTACGCACACGATGTGCGATG
249 ACCGACGGCATTGGGGTTCCGACGATCGGGGTGGCG-GGGGGGTGTGCGCACATGATGTGCGATG
* * * **
3173152 GGTCCTGGTACTTGGCTCTTATATTGTCCCCCTATCCCTCATCAAATGTCGAGAACTCACACCCC
313 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
3173217 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGA
378 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
* * * * *
3173282 CAGTTTTTCCAAAAT-GTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTGTTTTATGCA
443 CACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
*
3173346 TACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
507 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* ** *
3173411 TTAAAAATCTTGAACCCCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
572 TAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
3173476 TGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATGAAAAA-GGCATTG
637 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTG
** *
3173540 GCACATAGAAATATGAAGATG-GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCAT
701 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
3173604 CCCGTCTCTCTAGCCGGCGTAGTGCCC-ACC-CAC-CC-GCTCGTTTCGTCGGTTGGCATAGGCA
766 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * * *
3173665 TACGGAGTTCATTCCTAGTCTAAGATTAGACCGGACCAAGGGTTGCGGCAGCAGGATAGACAGCT
831 TACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCA
3173730 CGTA
896 CGTA
* * * * * * * *
3173734 GAGGGTGACCCCACCGATCCCCGGCTTGCGCATCCAGTCCCTCCGACCGGCTAAGCGCCCGCACG
1 GAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* *
3173799 CTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGACTTCATTC
66 CTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * *
3173864 CCAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATTTGCTGGT
131 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * *
3173929 GCCACATTTTTCTTCGTCAGGGCGCCATCGTCGAAGCATCACCGGAGAACCTGACCGGCGGCATT
196 GCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATT
* * *
3173994 AGGGTTCCGACGA------T--CGGGGGGGTGTGCGCACATGATGTACTATGGGTGCTGGTACTT
261 GGGGTTCCGACGATCGGGGTGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
3174051 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
326 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
** *
3174116 TGAGATTTTACAGGTTTGCTGCCAAAAGCCATTAAAGTGTCTAAAATGGGGACATTTTTTTCAAA
391 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
* * *
3174181 CGGTCACAAAATCTTGTGCACTTGGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
456 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * * *
3174246 CAAGGATCACATCTACCATGTTTGGGGCTAAAACACCTTCCAAAAAAATTTTTAAAAATCCCGAA
521 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
* * *
3174311 TCGCAAAAAGTTTTGAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTG
586 CCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
3174376 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATGTG
651 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* *
3174441 AAGAGGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCC
716 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* *
3174506 GACGCAGTGCCCACCCGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATAT
781 GA--C-GT----A---G--TGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * *
3174571 GGAGTTCATTCCCAGTCTAAGATTGGAGCAGACCAAGGATTGCAGTAGCATGATCGGCAGCACGT
834 GGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGT
3174636 A
899 A
* ** * * * * * *
3174637 AAGGGGGACCCGGTCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTAAGTGCACGCACG
1 GAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* *
3174702 CTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGACTTCATTC
66 CTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * *
3174767 CCAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATTTGCTGGT
131 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * *
3174832 GCCACATTTTTCTTCGTCAGGGCGCCATCGTCGAAGCATCACCGGAGAACCTGACCGGCGGCATT
196 GCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATT
* * *
3174897 AGGGTTCCGACGA------T--CGGGGGGGTGTGCGCACATGATGTACTATGGGTGCTGGTACTT
261 GGGGTTCCGACGATCGGGGTGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
3174954 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
326 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
3175019 TGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGGGACATTTTTTTCAAA
391 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
* * *
3175084 CGGTCACAAAATCTTGTGCACTTGGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
456 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * ** * *
3175149 CAAGGATCACATCTACCATGTTTGGGGCTAAAAAACCTTCC-AAAAATTTTTTTAAAAATCCCGA
521 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA-ATTTTAAAAAATCCCGA
* * * * *
3175213 ATCGTAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCATCTTGCCACGAAACTTCACGT
585 ACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
*
3175278 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATGT
650 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
* * * *
3175343 GAAGAGGTGCCTAAA-CCAACTACCACCCTATCAATCCATGGCTTGCGCATCCCGTCTCTCTGGC
715 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* ** * *
3175407 CGACGCAGTGCCAACCCGCCCGCCTGCTCGTTTCGTCGGTTGGTTTAGGCATATGGAGTTCATTC
780 CGACGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * *
3175472 CCAGTCTAAGATTGGAGCAGACCGAGGATTGCAGTAGCATGATCGGTAGCACATAA
845 CCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGT-A
* * * * * * * *
3175528 AAGGGGGACCC-AGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCAGGCTAAGTGCACGCAC
1 GAGGGGGACCCGA-CCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
3175592 GCTCGTTTCGTGGGTTTGACTTAGGCATACGAAGTTCATTCCCAGTCTGAGCATACAGAGTTCAT
65 GCTCGTTTCGTGGG-TTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * * ** *
3175657 TCCTAGTCTAAGATCAGACCGGGCCAAGGGTTGCGGTAGAACATGCTGGGCTTAGGCATGTGTTG
129 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * *
3175722 GTGCCACATTTTTCTTTGCCGGGGCACCATCATCGGAGCATCATCGGAGAACCTGACCGACGGTA
194 GTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCA
* *
3175787 TTGGGGTTCCGGCGATCGGGGTGGCCGGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGT
259 TTGGGGTTCCGACGATCGGGGTGG-C-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
3175852 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAGACCCCCTTAAAGAC
322 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
3175917 CATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
387 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
*
3175982 CAAATGGTCACAAAATCTTGTACAC-TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
452 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
3176046 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAATC
517 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATC
* * * * ** *
3176111 TCGAACGGTAAAAAGTGTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTC
581 CCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
3176176 ACGGGAAGGCTTAAGGGACCATTGGATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
646 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
*
3176241 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTC
711 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
** * * * * *
3176306 TGGATGGCATAGTGCCCGCCCGCCCGCCCGATCGCTCATTTCATCGGTTGGCTTTGGCATACGGA
776 TGGCCGACGTAGTGCCCGCCCGCCCG-CC--T-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
** * * ** ** * * *
3176371 GTTCATTCCCAGTCTAAGATCAGATCGGAGTGAGGGTTGCGACAGTAGGATCGGTAGCACGCA
837 GTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTA
* * * * * ** * * *
3176434 GAGAGGGACCCGATCGATCCCCGAATTACGCATCCTGCCCCTCTGGTAGGTTGAGCACCCGTACG
1 GAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * * *
3176499 CTCATTTCGTGGGTTGACTTAGCCATACGGAGTTGATTCCCAGTCTAAGCATACAGAGTTCATTC
66 CTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * **
3176564 CCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCCAGCATGTGCTGGT
131 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * *
3176629 GCCACAATTTTCTTCGTCGAGGCACCATCGCCGGAGCATCACCGGAGAACCTGACTGACGACATT
196 GCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATT
* * * * *
3176694 GGGGTTCCGATGA-CCGGGTGGCTGGGGGGTGTGCGCACATGATGTGCGATTGGTGCTAGTACTT
261 GGGGTTCCGACGATCGGGGTGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
3176758 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
326 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
3176823 TGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAGA
391 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
* *
3176888 TGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
456 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* ** * *
3176953 CAAGTATCACGTCTAAGAAGTTTGGGG-CAAAACTCCTAT-CGAAAAAATTTTTAAAAATCTCGA
521 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCCGAAAAAATTTTAAAAAATCCCGA
* * * * * *
3177016 ACCGCAGAAAGGTTCGAAAATCGTGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCATGT
585 ACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* *
3177081 GAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
650 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
*** * * * *
3177146 GAAGGCATGCCTAAACCCACCTACCACCCTATCAATCGACGGCTTGCACATCCCGTCTCTTTGGC
715 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * * ** *
3177211 CGAAGTCGTGCCCGCCCACCCACCTGCCCACTCGTTTCGTTAGTTGGCTTAGGCATACGGACTTC
780 CGACGTAGTGCCCGCCCGCCCGCCTG----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * *
3177276 ATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTACGGTCGCAGGATCGGTAGCACGTA
841 ATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTA
* *
3177335 GAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGCCCGGCTGAGCACCCGCACG
1 GAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * *
3177400 CTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAG--T---C-TA---AG---A-T-
66 CTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* *
3177451 -C-G-----GATC--A---GACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGT
131 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* ** ** * * *
3177504 GCCAGATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGAAGAACCTGGCCGACAGCATT
196 GCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATT
* * * * * * *
3177569 GGGGTTCCGATGATCGGGGCGACTGGGGGGGTGTCCACATATGATGTGCGATTGGTGCTGGTACT
261 GGGGTTCCGACGATCGGGGTGGC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
3177634 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
325 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
** * *
3177699 TTGAGATTTTACAGGTTTGCTATCAGTAGCCTTTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
390 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAA
* * *
3177764 ATGGTCACAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCCATAAAAA
455 ATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * *
3177829 TACAAAGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTG
519 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
* * **
3177894 AACCGCAAAAAGTTTTGAAAATCGTTAAAAATAGAAAACGAGTCACCTTGCCATGAAACTTCACG
584 AACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
3177959 TGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
649 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
*
3178024 TGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGG
714 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* ** * * * * **
3178089 CCGGCGTAGTGCCCTTCCGCCTGCCCGCTCATTTTGTCGGTTGGCTTAGAAATACGGAGTTCATT
779 CCGACGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * * ** * *
3178154 -CCAGTCTAAGATTGGACCGGATCAATGGTTGTGGCAACAATATCGACAGCACGCA
844 CCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTA
** * * *
3178209 GAGGGGGACCCGGTCGATCCCCGACTAGCACATCCCGCCCCTCTGGCCGGCTGAGAGCCCGCACG
1 GAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * *
3178274 CTTGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
66 CTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * *
3178339 CCAGTCTAAGATCGGATCGGACCGAGAGTTGCAGCAGCACATGCCGGGCTCGGGCATGTGCTGGT
131 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
** * * * * **
3178404 GCCGTAATTTTGTTCGTCGGGGTACCATCG-CTTGAGCATCGTCGGAGAACCTGACCGACGGCAT
196 GCCACATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCACCGGAGAACCTGACCGACGGCAT
* * * * * *
3178468 TGGGGTTCCGGCGATCGGGGGGGCCGAGGGGTGAGCGCACATGATGTGCAATGGGTGCTGGTACT
260 TGGGGTTCCGACGATCGGGGTGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
3178533 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGTGCAT
325 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
*
3178598 GTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAA
390 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAA
* * * * *
3178663 ATAGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCTTGCCAACAAATAT
455 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* *
3178728 ACAAGGAACACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGA
520 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
* * *
3178793 ACCCCAAAAAGTTTTGAAAATCTTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
585 ACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* *
3178858 GAAGGCTTAAGGGACCATTCTATGAACTTACAAG-C----------CA-T---A---A-AAATAT
650 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
*
3178904 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGC
715 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * * *
3178969 CGACGTAGTGCCCGCCTGCCCGCCCACCCGCTTGTTTCGTCGATTGGCTTAGGCATATGGAGTTC
780 CGACGTAGTG--C-CC-GCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * *
3179034 ATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGGAGGAGGATCGGTAGCACGTA
841 ATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTA
* * * * *
3179093 GAGGGGGATCTGACCGATCCCCGACTTGCGCATCTCGCCCGTCTGGCCGACTGAGCGCCCGCACG
1 GAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * *
3179158 CTCATTTCGTGGGTTGACTTAGGCATAC-AGAGTTCAGTCGCAGTCTATGCATACGGAGTTCATT
66 CTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * * *
3179222 CCCAGTCTAAGATCAGATCGAACCGAGGGTTACTGCAGCACATGCTAGGCTCGGGCATGTGTTGG
130 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * * *
3179287 TGCCGCATTTTTCTTCATC-GGGCACCATCATCGGAGCATCGCCAGAGAACCTGACCGGCGGCAT
195 TGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCAT
* * *
3179351 TGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTGCACACATGATGTGCGATGGGTGCTAGTA
260 TGGGGTTCCGACGATCGGGGTGG-CG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
3179416 CTTGGCCCTTATATTGGGCCCCTA-CCCTCATAAAACCTCGAGAACTCACACCCCCTTATAGAGC
323 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * * * *
3179480 ATTTGAGATTTTACAAGTTTGCTGCTAGTAGCTATTAAAGTGTCTAAAATGGGGACGCTTTTTTA
388 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
* * *
3179545 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTTTTGCATGCCAATAAA
453 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTTGTGCATGCCAACAAA
*
3179610 AATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
517 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* ** *
3179675 TGAACCGCAAAAAGTTTCAAAAATCATG-AAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCA
582 CGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
3179739 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAGAAA
647 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* * * * *
3179804 TATGATGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTGCACATCCCTTTTCTCT
712 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
** * * *
3179869 GGCCGGTGTAGTGCCCACCCGCTTGCCCGCCAGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAG
777 GGCCGACGTAGTGCCC-GCC-C--GCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
** * * * * *
3179934 TTCATTCCCAGTCTAAGATTGGACCAGACTAAGCGTTGTGATAGCAGGATCGACAGCACGCA
838 TTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTA
* * * *
3179996 GAGGGAGACCCGACCAATCCCC-AGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCTCGCAC
1 GAGGGGGACCCGACCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
3180060 GCTCGTTTCGTGGGTTGACTTAGGCATAC-AGAGTTCATTCCTAGTCGAAGCATACGGAGTTCAT
65 GCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * ** *
3180124 TCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGAAAGCACATGCTGGGCTCGGGCATGTGCTT
129 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * ** * * *
3180189 GTGCCGCATTTTTCTTTGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTAACCGGCGACA
194 GTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCA
* * * *
3180254 TTGGGCTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTA
259 TTGGGGTTCCGACGATCGGGGTGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
3180319 CTTGG-CCTTAATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAAGAG
323 CTTGGCCCTT-ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * * * *
3180383 CATTTGAGATTTTACAAGTTTGCTCCCAGTACCCATTAAAGTGTTTGAAATGGGGACGCTTTTTT
387 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
* *
3180448 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAA
452 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* *
3180513 AATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
517 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * * * *
3180578 CGAACCACAAAAAGTTTTGAAAATCCTGAAAAATAAAAAATGAGTCGTTTTGCCATGAAACTTCA
582 CGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * * *
3180643 CGTGAACGCTTAATGGACCATTGTATTAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAA
647 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* * * *
3180708 TATGAAGATGTGCCTAAACCCAGCTACCACCCTACCGATCCACGGCTTGTGCATCCTGTCTCTCT
712 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
** *
3180773 GGCCGACGTAGTGCCCCCCGGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCAGACGGAG
777 GGCCGACGTAGTG---CCC-GCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* ** *
3180838 TTGATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCA
838 TTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCA
3180884 CATGCTGGGC
Statistics
Matches: 6308, Mismatches: 720, Indels: 244
0.87 0.10 0.03
Matches are distributed among these distances:
874 137 0.02
875 139 0.02
876 7 0.00
877 168 0.03
878 79 0.01
879 303 0.05
880 7 0.00
881 1 0.00
882 2 0.00
883 102 0.02
884 433 0.07
885 167 0.03
886 389 0.06
887 60 0.01
888 1 0.00
889 3 0.00
890 107 0.02
891 75 0.01
892 172 0.03
893 51 0.01
894 1 0.00
895 8 0.00
896 2 0.00
897 5 0.00
898 204 0.03
899 172 0.03
900 121 0.02
901 452 0.07
902 593 0.09
903 1414 0.22
904 619 0.10
905 169 0.03
906 64 0.01
907 81 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
GCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATT
GGGGTTCCGACGATCGGGGTGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
CCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
GACGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTA
Found at i:3176551 original size:26 final size:26
Alignment explanation
Indices: 3176522--3176573 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
3176512 TTGACTTAGC
* *
3176522 CATACGGAGTTGATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
3176548 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
3176574 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:3178332 original size:26 final size:26
Alignment explanation
Indices: 3178296--3178348 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3178286 GTTAACTTAG
3178296 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3178322 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3178348 G
1 G
3178349 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3179216 original size:26 final size:26
Alignment explanation
Indices: 3179180--3179230 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
3179170 GTTGACTTAG
*
3179180 GCATACAGAGTTCAGTCGCAGTCTAT
1 GCATACAGAGTTCAGTCCCAGTCTAT
* *
3179206 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCAGTCCCAGTCTA
3179231 AGATCAGATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCAGTCCCAGTCTAT
Found at i:3181689 original size:26 final size:26
Alignment explanation
Indices: 3181653--3181705 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3181643 GTTGACTTAC
* *
3181653 GCATACCGAGTTGATTCCTAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
*
3181679 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
3181705 G
1 G
3181706 ATTGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:3182572 original size:26 final size:26
Alignment explanation
Indices: 3182532--3182584 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3182522 TTTGACTTAG
* *
3182532 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGATCATTCCCAATCTAA
*
3182558 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAATCTAA
3182584 G
1 G
3182585 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAATCTAA
Found at i:3182912 original size:892 final size:883
Alignment explanation
Indices: 3181092--3184983 Score: 5297
Period size: 893 Copynumber: 4.4 Consensus size: 883
3181082 TCACACACCC
*
3181092 TTAAAGTGTCTGAAATGGGGACACTTTTATCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
1 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
*
3181157 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAA
66 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT-GGGCCAA
* *
3181222 AACTCCTTCCGAAAAAA-TTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
130 AACTCCTT-CGAAAAAATTTTAAAAAATCCCGAACC-TAAAAAGTTTCAAAAATCATGAAAAATA
* *
3181286 GAAAACGAGTTGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
193 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
*
3181351 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTAT
258 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* *
3181416 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT--AG--TGCCCGCCCGCCCGCTCTTT
323 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGAGCCCGCCCGCCCGCCCGCTCATT
* *
3181477 TCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGTCCAGAT-AGAGGGTTG
388 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCA-AGGGTTG
* * * * * * *
3181541 CAGCAGCAAGATCGACTAGCTCGCA-AAGGGGGCCCCGACCGATCCCTGTCTTACGCATCTCGCC
452 CAGCAGCAGGATCGACTAGATCGCAGAA-GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCC
* * *
3181605 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTACGCATACCGAGTTGATTC
516 CCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACCGAGTTCATTC
* * * *
3181670 CTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCAGCAGCA
581 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCA
* *
3181735 CATGCTAGGCTCAAGCATGTGTCGGTGCCGCATTTTTCTTCGTCGGGGCAC----CATCGTCGGA
646 CATGCTAGGCTCAGGCATGTGCCGGTGCCGCATTTTTCTTCGTCGGGGCACAGAGCATCGTCGGA
* * * * *
3181796 GAACCTGACCGACGACATTGGGGTTCCGACGATC-GGGGGGGAGTGCGCACATGATGTGCGGTGG
711 GAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGGTGTGCGCACATGATGTGCGATGG
* * *
3181860 GTGCTGGTACTTGGCCCTTACATTGGCTCCCTATCACTCATCAAACCTCGAGAACTCACACCCCC
776 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
**
3181925 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTTGTAGCCA
841 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
3181968 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
1 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
3182033 TCGTTGATTTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAA
66 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGG-CCAA
* * **
3182098 AAATCCTTCTAAAAAATTTTTAAAAAATCCCGAACCATAAAAAGTTAAAAAAATCATGAAAAATA
130 AACTCCTTCGAAAAAA-TTTTAAAAAATCCCGAACC-TAAAAAGTTTCAAAAATCATGAAAAATA
* *
3182163 GAAAATGAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA-CATTGTATGAATTTACA
193 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* ** *
3182227 AGCCATAAAAATGACATTGGCACATAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTAT
258 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * *
3182292 CGATCCACGGCTTGCGCACCCCGTCTCTCTGGCCGGCATAGAGCCCGCCCGCCCGCCCGCTCGTT
323 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGAGCCCGCCCGCCCGCCCGCTCATT
* ** **
3182357 TCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGACTGGATCAAGGGTTGC
388 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCAAGGGTTGC
* * * *
3182422 AGCAGCAGGATCGGCAAGAT-GTAGAAGGGGAACCGACCGATCCCCGGCTTGCGCATCCCGCCCC
453 AGCAGCAGGATCGACTAGATCGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
* * * *
3182486 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATACGGAGTTCATTCCT
518 TCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACCGAGTTCATTCCC
* * * *
3182551 AATCTAAGCATACGGAGATCATTCCCAGTCTAAGATCGGACCAGTCCAAGGGTTGCGGCAGCACA
583 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCACA
* * **
3182616 TGTTGGGCTCAGGCATGTGCCGGTGCCGCATTTTTCTTCACCGGGGCACCATCACAGGAGCATCG
648 TGCTAGGCTCAGGCATGTGCCGGTGCCGCATTTTTCTTCGTCGGGG------CACA-GAGCATCG
*
3182681 TCGGAGAACCTGACCGACGGCATTGGGGTTTCGGTGATCGGGGGGTGGTGTGCGCACATGATGTG
706 TCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGG-GGTGTGCGCACATGATGTG
* *
3182746 CGATGGGTGCTGGTACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAATCCTCGAGAACTCAC
770 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
3182811 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
835 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
3182860 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTT
1 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
*
3182925 TAGCTGAATTTTTTTGTGCATACCAACAAAAATACAAGGATCATGTCTACCAAGTTTCGGGCCAA
66 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT-GGGCCAA
* * * *
3182990 AACTCCTGCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCTTGAAAAATA
130 AACTCCT-TCGAAAAAATTTTAAAAAATCCCGAACC-TAAAAAGTTTCAAAAATCATGAAAAATA
* * * *
3183055 CAAAAGGACTCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
193 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
** *
3183120 AGTGATAAAAATGGCATTGGCACGCAGAAATATCAAGATGTGCCTAAACCCACCTACCACCCTAT
258 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* *
3183185 CGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCATT
323 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGAGCCCGCCCGCCCGCCCGCTCATT
* ** * * *
3183250 TCGTCGATTGGCTTAGGCATATAGAGTTCATTCCCAGTCCAAGATCAGACCAGA-CTGAGGGTTG
388 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATC-AAGGGTTG
* * * * *
3183314 CAGTAGCAGGATCGAC-AGCA-CGCAGAGGGGGCCCCGATCGATCCCCGTCTTGCGCATCCCGCC
452 CAGCAGCAGGATCGACTAG-ATCGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCC
* * * *
3183377 CCTATCGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAAGCATACCGAGTTCATTC
516 CCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACCGAGTTCATTC
* * *
3183442 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGGGGCAGCA
581 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCA
* * * * *
3183507 CATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTC-T--TC---GC-CAGAGCATTGTCGGA
646 CATGCTAGGCTCAGGCATGTGCCGGTGCCGCATTTTTCTTCGTCGGGGCACAGAGCATCGTCGGA
* **
3183565 GAACCTAACCGACGGCATTGGGGTAACGGCGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTG
711 GAACCTGACCGACGGCATTGGGGTTTCGGCGATC-----GG-GGGGGGTGTGCGCACATGATGTG
* * * *
3183630 CCATGGGTGCTCGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
770 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
3183695 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
835 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
3183744 TTAAAGTTTCTGAAATGGGGACACTTTTTTCAAATGTTCACAAAATCTTGTACACTTCGAGTTTT
1 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
3183809 TAACTGATTTTTTTTGTGCATGCCAA-AAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAA
66 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT-GGGCCAA
* * * * * *
3183873 AACTCTTTCCGAAAAAATTTTAAAAAGTCTCGAACCTCAAAAAGTTTTAAAAATCGTTAAAAATA
130 AACTCCTT-CGAAAAAATTTTAAAAAATCCCGAACCT-AAAAAGTTTCAAAAATCATGAAAAATA
*
3183938 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACA
193 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
3184003 AGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACGCACCTACCACCCTAT
258 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * * * *
3184068 CGATCAACGGCTTGCGCATCCCGTTTTTTTGGCCGACGTAGTGCCCGCCCACCCGTCCACCCGTT
323 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGAGCCCGCCCGCCCG----CCCGCT
* * * * * * *
3184133 CATTTCGTCGGTTGG-TTGAGTCATACGGAGTTTATTCCTAGTCTAAGATCAGATCGGACCAAGG
384 CATTTCGTCGGTTGGCTT-AGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCAAGG
* * * * *
3184197 GTTG-ATGTAGCAGGATCG-GTAG-TCGTAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCC
448 GTTGCA-GCAGCAGGATCGACTAGATCGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCC
* * * * * * * *
3184259 TGCCCCTCTAGCCCGCTGAGCTCCCGCACGCTCATTTCGTGGGTTCAGTTAGGCAAACGGAGTTC
512 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACCGAGTTC
*
3184324 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAAGGTTGCGGC
577 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGC
*
3184389 AGCACATGCTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTAGA
642 AGCACATGCTAGGCTCAGGCATGTGCCGGTGCCGCATTTTTCTTCGTCGGGG---CA---C-AGA
* * * *
3184454 GCATCGCCGGAGAACCTGACCGGCAGCATTGGGGTTTTCGGCAATCGGGGTGGCCGGGGGGGGTG
700 GCATCGTCGGAGAACCTGACCGACGGCATTGGGG-TTTCGG----C--GAT---CGGGGGGGGTG
* *
3184519 TGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
755 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
3184584 ACCT-GAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTTGCCA
820 ACCTCG-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
3184648 TTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTT
1 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* *
3184713 TAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAA
66 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCAAA
* ** * ** *
3184778 AATCCTTTCGAAAAAATCCT---GAAT--CG---C-AAAAAGTTTCGGAAGTCATGAAAAATAGA
131 ACTCC-TTCGAAAAAATTTTAAAAAATCCCGAACCTAAAAAGTTTCAAAAATCATGAAAAATAGA
* * * *
3184834 AAATGAGTCGTCTTGCCATCAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTACAAG
195 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*
3184899 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
260 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
3184964 ATCCACGGCTTGCGCATCCC
325 ATCCACGGCTTGCGCATCCC
3184984 ACCGGCATAG
Statistics
Matches: 2675, Mismatches: 269, Indels: 126
0.87 0.09 0.04
Matches are distributed among these distances:
875 10 0.00
876 240 0.09
877 85 0.03
878 2 0.00
879 235 0.09
880 94 0.04
881 2 0.00
883 259 0.10
884 214 0.08
885 7 0.00
886 191 0.07
887 74 0.03
888 1 0.00
889 2 0.00
890 41 0.02
891 5 0.00
892 341 0.13
893 395 0.15
894 164 0.06
895 1 0.00
896 1 0.00
899 3 0.00
900 32 0.01
901 6 0.00
903 1 0.00
904 233 0.09
905 33 0.01
907 2 0.00
910 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (883 bp):
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCAAA
ACTCCTTCGAAAAAATTTTAAAAAATCCCGAACCTAAAAAGTTTCAAAAATCATGAAAAATAGAA
AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGAGCCCGCCCGCCCGCCCGCTCATTTCG
TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCAAGGGTTGCAGC
AGCAGGATCGACTAGATCGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
GGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACCGAGTTCATTCCCAGT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCACATGC
TAGGCTCAGGCATGTGCCGGTGCCGCATTTTTCTTCGTCGGGGCACAGAGCATCGTCGGAGAACC
TGACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
Found at i:3183452 original size:26 final size:26
Alignment explanation
Indices: 3183422--3183477 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
3183412 TGGGTTGACT
3183422 TAAGCATACCGAGTTCATTCCCAGTC
1 TAAGCATACCGAGTTCATTCCCAGTC
*
3183448 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACCGAGTTCATTCCCAGTC
3183474 TAAG
1 TAAG
3183478 ATCGGATCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACCGAGTTCATTCCCAGTC
Found at i:3186722 original size:26 final size:26
Alignment explanation
Indices: 3186686--3186735 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
3186676 GACTTAGGCA
*
3186686 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGGAGTTCATTCCCAGCCTAAGCT
3186712 TACGGAGTTCATTCCCAGCCTAAG
1 TACGGAGTTCATTCCCAGCCTAAG
3186736 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGCCTAAGCT
Found at i:3187922 original size:899 final size:897
Alignment explanation
Indices: 3185810--3198206 Score: 14797
Period size: 899 Copynumber: 13.9 Consensus size: 897
3185800 GTTGACTTAG
** * *
3185810 GCATACGGAGTTCATTCTTAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
3185875 CTCGGGCATGTGCTGGTGCAACATTTTTCTTCGTCGGAGCACCATCGCCGGAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
** * * *
3185940 ACCTGACCGGTGGCATTGGGGTTTCGGCGATCGACGAGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTTCGACGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTG
* *
3186005 TGATGGGTGCTGGTACTTGGCCCTTATA-TGGCCCCCTATCCCTCATCAAACCTCCAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * * *
3186069 ACCCCCTTAAAGACCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
3186134 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
3186199 TCCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACGCTTTTCGAAAAT
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTC-CTTCCAAAAA
* ** * *
3186264 GTTTTAAAAAATCCAAAACCGTAAAAAGTTTCAAAAATAGCGAAAAATAGAAAACGAGTCGTCTT
452 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * ** ** * ** *
3186329 GGCATTAAACTTCATGTGAACCCTTGGGGGACCATTGTATGAATTTACAAGCCACAAAAATTTCG
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
3186394 TTAGCATGCCA-AAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCACAGCTTGT
582 TTGGCATG-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
3186458 GCATCCTGTCTCTTTGGCCGACGTAGTGCCCGCA-CGCCCGCTCGCTCGTTTCGTCGGTTGGGTT
646 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCACCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * *
3186522 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACT-GAGGCTTGCGATAGCAGGATCG
711 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-CGACTCGAGGGTTGTGGTAGCAGGATCG
* * * *** * * * **
3186586 GTAGCAGGAAGAGATTGACCCGG-TCGATCCCCCGCTTGCGCATCCTGCCCCTCTGACCGATTGA
775 GCAGCACGCAGAGGGGGACCCGGCT-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
*
3186650 GCGCCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
3186709 GCTTACGGAGTTCATTCCCAGCCTAAGATCAGACC-GAACCGAGGGTTGC-AGCAGCACATGCTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGA-CAGCACATGCTG
** * * * * *
3186772 CACTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCCGAGCATCGCCGGA
64 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGA
* *
3186837 GAAACTGACCCG-CGGCATT-AGGTTTCCGACGATCGGGGGGGGCCAGGAGGGGTGTGCGCACAT
129 GAACCTGA-CCGACGGCATTGGGGTTT-CGACGATC--GGGGGGCC-GG-GGGGTGTGCGCACAT
* *
3186900 GATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGA
188 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
* *
3186965 ACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTT
253 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * *
3187030 TAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTAGAGTTTTTAGCTAAATT
318 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
**
3187095 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGTGGCCAAAACTAATTCC
383 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG-GGCCAAAACTCCTTCC
* * *
3187160 AAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAGAATCGTGAAAAATAGAAAACGAGTC
447 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
3187225 GTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAA
512 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*** * * * *
3187290 TGGCATTGGCACAAAAAAATATGAAGATGTGCCTAAACGCACCTAGCACCCTATCGATCCACAGC
577 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
3187355 TTGCGCATCTCGTCTCTCTGG-CGGCGTAGTGCCCACCCATCCGCCCGCCCACTCGTTTCGTCGG
642 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CC-CCCA-CCGCCCGCCCGCTCGTTTCGTCGG
* * * **
3187419 TTGGCGTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGACTCAAGGGCTAAGGTAGCA
704 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGACTCGAGGGTTGTGGTAGCA
* * * * * * *
3187484 GGATCAGCAGCATGCAAAAGGGGACTCGGCTGATCCTCGGCTTGCGCATCCCGCCCTTCTGGCCG
769 GGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * * *
3187549 GCTGAGCACCCGCATGCTCGTTTTGTGGGTTCACTTAGGCAGACGGAGTTTATTCCCAGTCTAA
834 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
3187613 GCATACGGAGTTCACTCCCAGT-TAAGATCAAATCAGACCGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
3187677 CTCGGGCATGTGCTTGTGCCACATTTTTCTTCATCGGGGCACGATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
3187742 ACCAGACCGACGGTATTGCGGTTTCGACGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCG
131 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * * *
3187807 ATGGGTGCTGGCACATGGCCCTTATATTGTCCCCCTATCCTTCATCAAACCTCAAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
*
3187872 CCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
3187937 AGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
** * * * *
3188002 CATGCCAACAAAAATACAAGGATCATATCCACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAGT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTC-CAAAAAAT
* *
3188067 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAATGAGTCGTCTTGC
454 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * ** * **
3188132 CATTAAACTTCATGTGAACCCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATTTCATT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
3188197 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCACGGCTTGCGCA
584 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* ** * * ** * * *
3188262 TCCCGTCTCTTTGGCCGATGTAATGCCCGCA-CGCCCGCATGCGCGTTTCGTCGGTTGGGTTAAG
649 TCCCGTCTCTCTGGCCGGCGTAGTGCCCCCACCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * *
3188326 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACT-GAGGGTTGTGGTAGCAGGATCCGTA
714 CATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACTCGAGGGTTGTGGTAGCAGGATCGGCA
** * * *
3188390 GCACGCAGAGGTTGACCCAGCCGATCCCCGGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAGCGC
778 GCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
3188455 CCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
843 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
3188510 GCATATGGAGTTCATTCCCAGCCTAAGATCAGACC-GAACTGAGGGTTACGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGACAGCACATGCTGG
* * * *
3188574 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * * * * * *
3188639 AAACTGATCGGCAGCATT-AGGTTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCAAAAGATGT
130 AACCTGACCGACGGCATTGGGGTTT-CGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGT
*
3188703 GTGATGGGTG-TCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
193 GCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
*
3188767 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
3188832 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGATTTTTTAGCTGAATGTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
3188897 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTC-CAAA
* ** *** *
3188962 AAATTTTAAAAAATCCCGAACCGAAAAAAGTTTGGAAAATCCAAAAAAATAGAAAATGAGTCGTC
450 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
3189027 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT--AAA-GG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
3189089 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGACGGCCTG
580 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
3189154 CGCATCCCGTCTCTCTGGGCGGCGTAGTG----C-CCGCCAGCCCGCTCGTTCCGTCGGGTGGCT
645 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCACCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * ** ** * *
3189214 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAAC-CAAAGGTTACGACAACAGGATT
710 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG-ACTCGAGGGTTGTGGTAGCAGGATC
* * * * * *
3189278 GGTAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGTTGA
774 GGCAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
3189343 GCGCCCGAACGGTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
3189402 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * ** * * *
3189467 CTCGAGCATGTGCTAGTGCCGCATTTTTCTTCACCGGGGCACCATCGCTGGAGCTTCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
3189532 ACCTGACCGACGGTATTAGGGTTCCGACGATC---GGG--GGGGGGTAG-GCGCACATGATGTGT
131 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGT-GTGCGCACATGATGTGC
* *
3189591 GATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
*
3189656 CCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
3189721 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAATATTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
3189786 GCATGCCAAAAAAAATACAA-GATCATGTCTACCAAGTTTGTGGCCAAAACTCCTTTCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG-GGCCAAAACTCC-TTCCAAAAAA
* * ** *
3189850 TTGTAAAAAATCCTGAACCGTAAAAAGTTTTGAGAATCGTGAAAAATAGAAAACGAGTCGTCTTG
453 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * *
3189915 CCATGAAACTCCACGTGAA-GCTTTAAGGGACCACTGCATGAATTTACAAGCCATAAAAATGGCA
518 CCATGAAACTTCACGTGAAGGC-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
3189979 TTGGTACGCCA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
582 TTGGCATG-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * *
3190043 ACATCTCGTCTCTCTGGTCGGCGTAGTGCCTGCCTAACCGCCTGCCCACTCGTTTCATCGGTTGG
646 GCATCCCGTCTCTCTGGCCGGCGTAGTGCC--CC-CACCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * * *
3190108 CTTAGGCATACGGAGCTCATTCTCAGTTTAAGATCAGACTAGA-TCAAGGGCTGTGGTAGCAGGA
708 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-CGACTCGAGGGTTGTGGTAGCAGGA
* * * * * *
3190172 TCAGCAGCATGCAAAGGGGGACCCGG-TCGATCCCCAGCTTGCGCATCCCGTCCCTCTGGCGGGC
772 TCGGCAGCACGCAGAGGGGGACCCGGCT-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * * * *
3190236 TGAGCGCCTGCATGCTCGTTTCATGGTTTCACTTAGGCAGACGGAGTTCATTCCTAGTCTAA
836 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
3190298 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTG-TAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * * *
3190362 ATCGGGCATGTGCTGCTGTCGCATTTTTCTTCGTCGAGGTACCAT---C---GC-T----AGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
3190416 ACCTAACCGACGGCATTGGGGTTCCAACGATCGAGGGGGCTGGGGGCCGGGGGGCGTGTGTGCAC
131 ACCTGACCGACGGCATTGGGGTTTCGACGATC------G--GGGGGCC-GGGGG-GTGTGCGCAC
** * *
3190481 ATGATGTATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCCA
186 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAA
3190546 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
251 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
3190611 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAA
316 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
*
3190676 TTTTTTTGTGCATGCCAACATAAATACAAGGATCACGTCTACCAAGTTTGTGGCCAAAACTCCTT
381 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG-GGCCAAAACTCCTT
* * * * * *
3190741 TCAAAAAAATTTAAAAAATCTCAAACCGTAAAAAGTTTCGAGAATCGTGAAAAATAGAAAACGAG
445 CCAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* * *
3190806 TCGTCTTGCCATGAGACTTCACGTGAAGCCTTAAGGGACCACTGTATGAATTTACAAGCCATAAA
510 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * *
3190871 AATGGCATTGGCGTGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACA
575 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
*
3190936 GCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTC
640 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CC-CCCA-CCGCCCGCCCGCTCGTTTCGTC
* * *
3191001 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TAGAGGGCTGTGGTA
702 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACTCGAGGGTTGTGGTA
** * *
3191065 GTC-GGATCAACAGCACGTAGAGGGGGACCCGG-TCGATCCTCGGCTTGC-CATCCCGCCCCTCT
766 G-CAGGATCGGCAGCACGCAGAGGGGGACCCGGCT-GATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * *
3191127 GGCCGGCTGACCACCCGCACGCTCGTTTCGTGGGTTCACTTAGGCAGAAGGAGTTCATTCCCAGT
829 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
3191192 CTAA
894 CTAA
* * *
3191196 GCATACGGAGTTCACTCCCAGT-TAAGATC-GAACCAGACCAAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGACAGCACATGCTGG
* *
3191259 GCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * *** *
3191324 AACCAGACCGGCGGTATTGCAATTTCGACGATCGGGGGGGTCGGGGGGGGTGTGCGCACATGATG
130 AACCTGACCGACGGCATTGGGGTTTCGACGATC-GGGGGG-C-CGGGGGGTGTGCGCACATGATG
* * * * * **
3191389 TGTGATGGGTGGTGGCACATGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
*
3191454 GCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
3191519 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTTAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
3191584 TGTGCATGCCAAAAAAAATACAAGGATGACGTGTACCAAGTTTTGGGCCAAAACTCCTTCCAAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGGCCAAAACTCCTTCC-AAA
* * *
3191649 AAATTTTAAAAAATTCAGAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTC
450 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
3191714 TTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCGTTGTATGAATTTACAAGCCATGAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *** *
3191779 CATTGACACATAGAAATATGAAGATGTGCCGAAACCCACCTACCACCCTATCGATCCACGGCTTG
580 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
3191844 CGCATCCCGCCTTTCTGGCTGACGTAGTGCCCGC-CCGCCCGTCCGCTCGTTTCGTCGGTTGGCT
645 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCACCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * *
3191908 AAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TCGAGGATTGCGGCAGCAAGATC
710 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACTCGAGGGTTGTGGTAGCAGGATC
* * * * * * ** *
3191972 GGTAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCGCGCCCCTCTGGTCAACAGA
774 GGCAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
3192037 ACGCCCGCACG--C---TCGTAGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAA
839 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *** *
3192091 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGCGGTGGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
3192156 ATCGGGCATGTG-TCGGTGCCACATTTTTCTTCGCCAGGGCACCAT--------CA---CCAGAG
66 CTCGGGCATGTGCT-GGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * * * * *
3192209 AACCTGACTGGCAGCATTGGGG-TTCTGGCGATCAGGGGGTCGGGGGGTGCGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTTC-GACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
3192273 CGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *
3192338 ACCCCCTTAAAAAGCATTTGAGAATTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
3192403 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
3192468 TGCATGCCAACAAAAATACAAGGATCACG--T--C----TTGGGTCCAAAATTCCTTTCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-CCAAAACTCC-TTCCAAAAA
* * * *
3192525 ATTTTAAAAAATCTCGCACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACAAGTCGTCTT
452 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
3192590 GCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCAAAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
3192655 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACG
582 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
3192720 CATCCCGTCTCTCTGGCCGACGTAGTG--CCCATCTGCCTGCCTGCTCGTTTCATCGATTGGCTT
647 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCA-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * *
3192783 AGGCATACGGAGTTAATTCCCAGTCTAAGATTGGACCAGACT-GAGGGTTGTGGCAGCAGGATCG
711 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACTCGAGGGTTGTGGTAGCAGGATCG
* * * *
3192847 GCAGCACGCAGAGGGGGAACCAG-TCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGACTGA
775 GCAGCACGCAGAGGGGGACCCGGCT-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
3192911 GCGCTCACACGCTCGTTTCGT--G--GA-TT--G---AC-----T--TT----G-----
839 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
3192944 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGACAGCACATTCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
3193009 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTAGGGGCACCATTGCCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
3193074 ACCTGATCGGCGGCATTGGGATTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
131 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
3193139 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGAAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
* * * * *
3193204 CCCCTCAAAGAGCATTTCAGATTTTACAGGTTTACTGCCGGTAGCCATTAAAGTGTCTGGAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
3193269 GGACACCTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
3193334 TC-TGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
391 -CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCC-AAAAAA
* *
3193397 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAATCGTCTTG
453 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
3193462 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
3193527 TGGCAGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTACGC
583 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * * *
3193592 ATCCTGTCTCTTTTGCCGGCATAGTGCTCGCCCCCCTGCCCGCTCGTTTGTTTCGTCGGTTGGCT
648 ATCCCGTCTCTCTGGCCGGCGTAGTGC-C-CCCACC-GCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * *
3193657 TAGGCATACAGAGTTCATTCCCAGGCTAAGATCAGACCAGAC-CGAGGGTTGTGGTAGTAAGATT
710 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACTCGAGGGTTGTGGTAGCAGGATC
* * * *
3193721 GGCAGCACGCAGAGAGGGACTCGACTGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGA
774 GGCAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * *
3193786 GCGCACGTACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAA
839 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * * *
3193845 GCATATGGAGTTTATTCCCAGTCAAAGATC-GAACCAGATAGAGGGTTGTGGCAGCACATTCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGACAGCACATGCTGG
* * * * * * *
3193909 GC-CTGGGCATGTGCTAGTGCCATATTTTTCTTCGTCCGGGCACCTTCGTCGGAGCATCGTCAGA
65 GCTC-GGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGA
* * *
3193973 GAACCTGACCGATGTCATTGGGGCACTAGCGGAATTGTGGTTCCTG-CGATTGAGGGGCCGGGGG
129 GAACCTGACCGA---C-----GGCA-TTG-GG----GT--TT-C-GACGATCGGGGGGCCGGGGG
** * *
3194037 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTATAACCCTCTT
176 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
3194102 CAAACCTCAAGAACTCACACCCGCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
241 CAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
3194167 CATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
306 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
3194232 TTTAGCTGAA-TTTTTTGTCCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCA
371 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCA
* * *
3194296 AAACTCCATCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
436 AAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
*
3194361 AGAAAACGACTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
500 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
3194426 AAGCCATAAAAATGGCATTGTCATGCTGAAATATGAAGATGTGCCTCAACCCACCTACCACCCTA
565 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * *
3194491 TCGATCCACGGCTTGCGAATCCCGCCTCTTTGGCCGGCGTAGTGCCTGCCCGCCTGCCCGCTCGT
630 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC--CCCACC-GCCCGCCCGC
* * *
3194556 TGGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAG
692 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACTCGAG
* * * * * * * *
3194620 GGTTGTGGCAGTAAGATTGGCAGCACGCAGAGAGGGACCAGGCTGATCCTCGGCTTGTGCATCCC
756 GGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCC
* * * *
3194685 GCCCCTCTGGCTGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGATCA
821 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
3194750 TTCCCAGTCTAA
886 TTCCCAGTCTAA
* * * * * *
3194762 GCATATGGAGTTTATTCCCAAT-TGAAGATC-GAACCGGACCGAGGGTTGCGGCAGCACATTCTG
1 GCATACGGAGTTCATTCCCAGTCT-AAGATCAG-ACCAGACCGAGGGTTGCGACAGCACATGCTG
* * ** * **
3194825 GGCTTGGACATGTGCTGGTGCCGTATTTTTCTTCGTTC-GGGCACCATCACCGGAGCATCGGAGG
64 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG-TCGGGGCACCATCGCCGGAGCATCGCCGG
* * *
3194889 AGAACCTGACCGGCATCATTGGGGCATGGCGGCATTGGGGTTCCGATGATCGAGGGGCCGGGGGG
128 AGAACCTGA----C--C------G-A---CGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGG
* *
3194954 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCTTC
177 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
3195019 AAACCTCGAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
242 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
3195084 ATTAAAGTGTTTGAAAT-GGGACAC-TTTTTCAAATGGTCACAAAATC-TGTACACTTCGAGTTT
307 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
**
3195146 TTAGCTGAA-TTTTTTGTGGCATGCCAACAAAAATACAAGGATCATATCTA-CAAG-TTGGGCCA
372 TTAGCTGAATTTTTTTGT-GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCA
* * * * *
3195208 AAACTCCATCTGAAAAAATTTTAAAAAATTCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
436 AAACTCCTTC-CAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
* * * *
3195273 AAAAAAACGACTCGTCTTTCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTA
500 -AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * * *
3195338 GAAGGCATAAAAGTGGCATTGGCATGCTGAAATATGAAGATGTGCCCAAACCCACCTACCACCCT
564 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * *
3195403 ATCGATCCACGGCTTGCGAATCCCGCCTCTCTGGCCGGTGTAGCGCCCGC-CCGCCCACCCGCTC
629 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCACCGCCCGCCCGCTC
* * * * * *
3195467 GTTTCGTCAGTTGGCTAAGGCATACAGTGTTCATTCCCAGTCTAAGATTGGACTGGA-TCGAGGG
694 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-CGACTCGAGGG
* * * * * ** * **
3195531 TTGCGGCAGCAAGATTGGCAGCATGCAGAGGGGGATGCGACCAATCCCCGGCTTGCGCATCCCGC
758 TTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGC
* * * ** * * * *
3195596 CCCTCTAGCTGGCTGATCGCCCGCACGCTCGTTTCGTTCGTTCACTTAGGCAGACGAAGTTAATT
823 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
3195661 CCCAGTCTAA
888 CCCAGTCTAA
* * * * * *
3195671 GCATACAGAGTTCATTCCAAGTCTAAGATC-GAACCAAACCAAGGGTTACGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGACAGCACATGCTGG
* * * * *
3195735 GCTCGAGCATGTGCTGCTACCATATTTTTCTTCGTCGAGGCACCAT--------CA-CG--GGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* *
3195789 AACCTGACCGGCTGCATTGGGGTTTCGACGATCGAGGGGGCCGGGGGGTGTGTGCGCACATGATG
130 AACCTGACCGACGGCATTGGGGTTTCGACGATCG-GGGGGCC-GGGGG-GTGTGCGCACATGATG
* *
3195854 TACGATGGGTGCTGATACTTGGCCCTTATATTGGCCCTTATATTGGCCCCATATCCCTCATCAAA
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGG--C---------CCCC-TATCCCTCATCAAA
* * * * *
3195919 CCTCGAGAACTCACACCGCATTAAAGAGCATTTGAGAATTTATAGGTTTGCTGCCAGTAGCCATT
245 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
3195984 AAAATGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
310 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
*
3196049 GCAT-AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAA
375 GC-TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAA
* * * * *
3196113 ACACCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAA
438 ACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
* * * * *
3196178 AAAATGAGTCATCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACTAGTGTATGAATTT---A
502 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*
3196240 --C------A----A---GC---C----ATA--AAGATGTGCCTAAACCCACCTACCACCATATC
567 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
3196281 GATTCTCGGCTTGCGCATCCCGTCTCTCTGGCCAGCGCAGTG----C-CCGCCCGCCCGCTTC-T
632 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCACCGCCCGCCCGC-TCGT
* *
3196340 TTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCGGATCCGA-TCGAGGGTT
696 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGACTCGAGGGTT
* * * * * * *
3196404 GTGGTAGAAGGATCGGCAGCACGTAGAGGGGGACCCAGCCGATCCCCGGCTTACACATCCCACCC
760 GTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCC
* * * ** *
3196469 CTCTGGCCAGCTGACCGCCCGCACGCTTGTTTCGTGATTTGACTTAGGCATACAGAGTTCATTCC
825 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
3196534 CAGTCTAA
890 CAGTCTAA
* * * * * ** * *
3196542 GCTTACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGATGGCAAATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
*
3196607 ATCGGGCATGTG-TCGGTGCCACATTTTTCTTCGTCGGGG---CA----C----CATCGCCGGAG
66 CTCGGGCATGTGCT-GGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * *
3196660 AACCTGA-CAAGCGGCATTGGGGTTCCGGCGATCGGAGGGGACAGGGGGGTGTGCGCACATGATG
130 AACCTGACCGA-CGGCATTGGGGTTTCGACGATCGG-GGGG-CCGGGGGGTGTGCGCACATGATG
* * *
3196724 TGTGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
*
3196789 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
**
3196854 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAAAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
3196919 TGTGCATGCCAAAAAAAATAGAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCAAAAA
* * * ** * *
3196984 ATTTTAAAAAATCCCAAACAGTAAAAAGTTTCGAAAATCGTGAAAAGGAAAAAACAAGTCGTCTT
452 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
3197049 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCAAAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * *
3197114 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGACGGCTTACG
582 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** * * *
3197179 CAACCCGTCTCTCTGGCCGACGTAGTG-CCCGTCCGCCCGGCCGTTCGTTTCGTCAGTTGGCTTA
647 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCACCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * ** * * * * *
3197243 GGCATACGTAGTTCATTCCTAGTCTAAGATTGGATTGGACT-AAGGGTTGCGGCAGGAGGATCGA
712 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGACTCGAGGGTTGTGGTAGCAGGATCGG
* * * * * * * * *
3197307 CAGGACGTAGAAGGGGTCCCGACCGATCCCCGACTTACGCATCGCGCCCCTCTGGCCGGCTGAGC
776 CAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
3197372 ACCCGCACGCTCGTTCCGTGGATTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
841 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
3197429 GCATACGGAGTTTATTCCCAGT-TGAAGATCAGACCAGACCGAGGGTT-CTGGTAGCACGTGCTG
1 GCATACGGAGTTCATTCCCAGTCT-AAGATCAGACCAGACCGAGGGTTGC-GACAGCACATGCTG
* * * * *
3197492 GGCTTGGGCATCTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGA
64 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGA
** *
3197557 GAACCTGACCGACGGCATTGGGGTACCGGCGGCATTGGGGTTCCGGTGATCGGGCGGTCGGGGGG
129 GAACCTGACCGACGGCATTGGGGTTTCGAC-G-A-------T-CGG-G---GGGC---CGGGGGG
*
3197622 -GTGCGCACATGATGTGC-AGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTT
177 TGTGCGCACATGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
** *
3197685 CAAACCTTGAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
241 CAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
3197750 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTT
306 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* *
3197815 TTTAGC-AAATTTTTTTTGTGCATGCCAACAAAAATACAAGCATCACGTCTACCAAGTTTCGGGC
371 TTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGC
* * * *
3197879 CAAAGCACCTTTCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
434 CAAAACTCC-TTCCAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
*
3197944 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTT
498 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
3198009 ACAAGCCATAAAAATGGCATTGGCATGCAGATATATGAAGATGTGCCTAAACCCACCTACCACCC
563 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
3198074 TATCGATCCACGGCTTACGCATCCCGTCTCTCTGGTCGACGTCGT---------GCCCGCCCGCT
628 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCACCGCCCGCCCGCT
* * * *
3198130 CGTTTCGTTGAATTGGCTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC-CGAG
693 CGTTTCGTCG-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGACTCGAG
*
3198194 GGTTGCGGTAGCA
756 GGTTGTGGTAGCA
3198207 CATGCTGGGC
Statistics
Matches: 10009, Mismatches: 1166, Indels: 638
0.85 0.10 0.05
Matches are distributed among these distances:
853 92 0.01
854 1 0.00
856 100 0.01
857 16 0.00
858 187 0.02
859 5 0.00
861 3 0.00
862 2 0.00
863 18 0.00
864 249 0.02
865 4 0.00
867 2 0.00
868 5 0.00
869 4 0.00
870 52 0.01
871 523 0.05
872 11 0.00
873 5 0.00
874 358 0.04
875 219 0.02
876 2 0.00
877 6 0.00
878 1 0.00
879 6 0.00
880 3 0.00
881 4 0.00
882 250 0.02
883 71 0.01
884 50 0.00
885 216 0.02
886 232 0.02
887 271 0.03
888 94 0.01
889 4 0.00
890 3 0.00
891 1 0.00
892 319 0.03
893 5 0.00
894 2 0.00
895 110 0.01
896 387 0.04
897 319 0.03
898 329 0.03
899 1450 0.14
900 340 0.03
901 385 0.04
902 525 0.05
903 385 0.04
904 205 0.02
905 2 0.00
906 17 0.00
907 57 0.01
908 7 0.00
909 299 0.03
910 6 0.00
911 11 0.00
912 302 0.03
913 218 0.02
914 262 0.03
915 9 0.00
916 163 0.02
917 568 0.06
918 239 0.02
919 3 0.00
921 1 0.00
923 3 0.00
924 2 0.00
925 4 0.00
929 1 0.00
930 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCAAAAAATTT
TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTGCCCCCACCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCGGACCGACTCGAGGGTTGTGGTAGCAGGATCGGCAGCA
CGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:3188520 original size:26 final size:26
Alignment explanation
Indices: 3188484--3188536 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3188474 GTTGACTTAG
* *
3188484 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
3188510 GCATATGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
3188536 G
1 G
3188537 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:3189405 original size:26 final size:26
Alignment explanation
Indices: 3189376--3189428 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3189366 GTTGACTTAG
3189376 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3189402 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3189428 G
1 G
3189429 ATTAGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3192101 original size:26 final size:26
Alignment explanation
Indices: 3192065--3192117 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3192055 GTTGACTTAG
* *
3192065 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3192091 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3192117 G
1 G
3192118 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:3195610 original size:913 final size:906
Alignment explanation
Indices: 3192944--3198183 Score: 6122
Period size: 917 Copynumber: 5.8 Consensus size: 906
3192934 ATTGACTTTG
* * * * * *
3192944 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGACAGCACATTCTAGG
1 GCATACGGAGTTTATTCCCAGT-TAAGATCGAACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* ** *
3193009 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTAGGGGCACCATTGCCGGAGCAT-C---G--C
65 CTTGGGCATGTGCTGGTGCCATATTTTTCTTCGT-CGGGCACCA-T-CCGGAGCATCCGGAGAAC
* * * *
3193068 CAGA--GA-AC-CT---G-ATCGGCGGCATTGGGATTCCGACGATCGGGGGGCCGGGGGGTGTGC
127 CTGACCGACACATTGGGGCAT-GGCGGCATTGGGGTTCCGACGATCGAGGGGCCGGGGGGTGTGC
*
3193125 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
191 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACC
* * * * *
3193190 T-GAAGAACTCACACCCCCTCAAAGAGCATTTCAGATTTTACAGGTTTACTGCCGGTAGCCATTA
256 TCG-AGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * *
3193254 AAGTGTCTGGAATGGGGACACCTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAG
320 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
3193319 CTGAATTTTTT-TGTGTC-TGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
385 CTGAATTTTTTGTGTG-CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
*
3193381 ACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
449 ACTCCTTCCAAAAAAATTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAA
*
3193446 AAAACGAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
513 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * *
3193511 GCCATAAAAATGGCATTGGCAGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATC
578 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * * *
3193576 GATCCACGGCTTACGCATCCTGTCTCTTTTGCCGGCATAGTGCTCGCCC-CCCTGCCCGCTCGTT
643 GATCCACGGCTTACGAATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-GCCCGCTC---
* * *
3193640 TGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGGCTAAGATCAGACCAGACCGAGGG
704 -GTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGA-CGAGGG
* * * *
3193705 TTGTGGTAGTAAGATTGGCAGCACGCAGAGAGGGA-CTCGACTGATCCCCGGCTTGTGCATCCCG
767 TTGTGGCAGTAAGATTGGCAGCACGCAGAGGGGGATC-CGACCGATCCCCGGCTTGCGCATCCCG
* * * *
3193769 CCCCTCTGGCCGGCTGAGCGCACGTACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
831 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
*
3193834 TCCCAGTGTAA
896 TCCCAGTCTAA
* * ** ** *
3193845 GCATATGGAGTTTATTCCCAGTCAAAGATCGAACCAGATAGAGGGTTGTGGCAGCACATTCTGGG
1 GCATACGGAGTTTATTCCCAGT-TAAGATCGAACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
3193910 CCTGGGCATGTGCTAGTGCCATATTTTTCTTCGTCCGGGCACCTTCGTCGGAGCATCGTCAGAGA
65 CTTGGGCATGTGCTGGTGCCATATTTTTCTTCGT-CGGGCACCATC--CGGAGCATC--CGGAGA
** * * * *
3193975 ACCTGACCGATGTCATTGGGGCACTAGCGGAATTGTGGTTCCTG-CGATTGAGGGGCCGGGGGGT
125 ACCTGACCGA-CACATTGGGGCA-TGGCGGCATTGGGGTTCC-GACGATCGAGGGGCCGGGGGGT
* * *
3194039 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTATAACCCTCTTCA
187 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCA
* *
3194104 AACCTCAAGAACTCACACCCGCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
252 AACCTCGAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
3194169 TTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
317 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* *
3194234 TAGCTGAA-TTTTT-TGTCCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG-CA
382 TAGCTGAATTTTTTGTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* *
3194296 AAACTCCATCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
447 AAACTCCTTCCAAAAAAATTTTAAAAAATC-CGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
* *
3194361 AGAAAACGACTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
511 AAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
3194426 AAGCCATAAAAATGGCATTGTCATGCTGAAATATGAAGATGTGCCTCAACCCACCTACCACCCTA
576 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * *
3194491 TCGATCCACGGCTTGCGAATCCCGCCTCTTTGGCCGGCGTAGTGCCTGCCCGCCTGCCCGCTCGT
641 TCGATCCACGGCTTACGAATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTC--
* *
3194556 TGGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGG
704 --GTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGAC-GAGG
* * * * *
3194621 GTTGTGGCAGTAAGATTGGCAGCACGCAGAGAGGGA-CCAGGCTGATCCTCGGCTTGTGCATCCC
766 GTTGTGGCAGTAAGATTGGCAGCACGCAGAGGGGGATCC-GACCGATCCCCGGCTTGCGCATCCC
* * * *
3194685 GCCCCTCTGGCTGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGATCA
830 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
3194750 TTCCCAGTCTAA
895 TTCCCAGTCTAA
* * * * *
3194762 GCATATGGAGTTTATTCCCAATTGAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATTCTGGG
1 GCATACGGAGTTTATTCCCAGTT-AAGATCGAACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
3194827 CTTGGACATGTGCTGGTGCCGTATTTTTCTTCGTTCGGGCACCATCACCGGAGCATCGGAGGAGA
65 CTTGGGCATGTGCTGGTGCCATATTTTTCTTCG-TCGGGCACCAT--CCGGAGCATC--CGGAGA
* *
3194892 ACCTGACCGGCATCATTGGGGCATGGCGGCATTGGGGTTCCGATGATCGAGGGGCCGGGGGGTGT
125 ACCTGACCGACA-CATTGGGGCATGGCGGCATTGGGGTTCCGACGATCGAGGGGCCGGGGGGTGT
*
3194957 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCTTCAAA
189 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAA
3195022 CCTCGAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
254 CCTCGAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
3195087 AAAGTGTTTGAAAT-GGGACAC-TTTTTCAAATGGTCACAAAATC-TGTACACTTCGAGTTTTTA
319 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
**
3195149 GCTGAATTTTTTGTG-GCATGCCAACAAAAATACAAGGATCATATCTA-CAAG-TT-GGGCCAAA
384 GCTGAATTTTTTGTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* ** *
3195210 ACTCCATCTGAAAAAATTTTAAAAAATTCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAA
449 ACTCCTTCCAAAAAAATTTTAAAAAA-TCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT-A
* * * *
3195275 AAAAACGACTCGTCTTTCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTAGA
512 AAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * * *
3195340 AGGCATAAAAGTGGCATTGGCATGCTGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTAT
577 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * *
3195405 CGATCCACGGCTTGCGAATCCCGCCTCTCTGGCCGGTGTAGCGCCCGCCCGCCCACCCGCTCGTT
642 CGATCCACGGCTTACGAATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTT
* * * * * *
3195470 TCGTCAGTTGGCTAAGGCATACAGTGTTCATTCCCAGTCTAAGATTGGACTGGATCGAGGGTTGC
707 TCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGA-CGAGGGTTGT
* * * *
3195535 GGCAGCAAGATTGGCAGCATGCAGAGGGGGATGCGACCAATCCCCGGCTTGCGCATCCCGCCCCT
771 GGCAGTAAGATTGGCAGCACGCAGAGGGGGATCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * ** * * * *
3195600 CTAGCTGGCTGATCGCCCGCACGCTCGTTTCGTTCGTTCACTTAGGCAGACGAAGTTAATTCCCA
836 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
3195665 GTCTAA
901 GTCTAA
* * * * *
3195671 GCATACAGAGTTCATTCCAAGTCTAAGATCGAACCAAACCAAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTTATTCCCAGT-TAAGATCGAACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
3195736 CTCGAGCATGTGCTGCTACCATATTTTTCTTCGTCGAGGCACCAT------CA-CGGGAGAACCT
65 CTTGGGCATGTGCTGGTGCCATATTTTTCTTCGTCG-GGCACCATCCGGAGCATCCGGAGAACCT
*
3195794 ----GAC-C-----GGC-T----GCATTGGGGTTTCGACGATCGAGGGGGCCGGGGGGTGTGTGC
129 GACCGACACATTGGGGCATGGCGGCATTGGGGTTCCGACGATCGA-GGGGCC-GGGGG-GTGTGC
* *
3195844 GCACATGATGTACGATGGGTGCTGATACTTGGCCCTTATATTGGCCCTTATATTGGCCCCATATC
191 GCACATGATGTGCGAT-GG-G-TG---C-TGG----TA-CTTGGCCCTTATATTGGCCCCATATC
* *
3195909 CCTCATCAAACCTCGAGAACTCACA-CCGCATTAAAGAGCATTTGAGAATTTATAGGTTTGCTGC
244 CCTCATCAAACCTCGAGAACTCACACCCGC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
3195973 CAGTAGCCATTAAAATGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
308 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
3196038 TCGAGTTTTTAGCAT-AATTTTTT-TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATG
373 TCGAGTTTTTAGC-TGAATTTTTTGTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* *
3196101 TTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAAT
437 TTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC-CGAACCGTAAAAAGTTTCAAAAAT
* * * * *
3196166 CATGAAAAATAAAAAATGAGTCATCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACTAGTGT
501 CATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
3196231 ATGAATTT---A--C------A----A---GC---C----ATA--AAGATGTGCCTAAACCCACC
566 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * * * *
3196269 TACCACCATATCGATTCTCGGCTTGCGCATCCCGTCTCTCTGGCCAGCGCAGTGCCCGCCCGCCC
631 TACCACCCTATCGATCCACGGCTTACGAATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * * * *
3196334 G--C-TTC-TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCGGA-TCCG
696 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACT-AG
* * * * *
3196394 ATCGAGGGTTGTGGTAG-AAGGATCGGCAGCACGTAGAGGGGGA-CCCAGCCGATCCCCGGCTTA
760 A-CGAGGGTTGTGGCAGTAA-GATTGGCAGCACGCAGAGGGGGATCCGA-CCGATCCCCGGCTTG
* * * * * **
3196457 CACATCCCACCCCTCTGGCCAGCTGACCGCCCGCACGCTTGTTTCGTGATTTGACTTAGGCATAC
822 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
3196522 AGAGTTCATTCCCAGTCTAA
887 GGAGTTCATTCCCAGTCTAA
* * * * * *** * *
3196542 GCTTACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGATGGCAAATGCTGGA
1 GCATACGGAGTTTATTCCCAGT-TAAGATCGAACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
3196607 ATCGGGCATGTG-TCGGTGCCACATTTTTCTTCGTCGGGGCACCAT-C---G---CCGGAGAACC
65 CTTGGGCATGTGCT-GGTGCCATATTTTTCTTCGTC-GGGCACCATCCGGAGCATCCGGAGAACC
* *
3196664 T----G--ACA-------A--GCGGCATTGGGGTTCCGGCGATCGGAGGGGACAGGGGGGTGTGC
128 TGACCGACACATTGGGGCATGGCGGCATTGGGGTTCCGACGATC-GAGGGG-CCGGGGGGTGTGC
* * *
3196714 GCACATGATGTGTGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
191 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACC
* * *
3196779 TCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAA
256 TCGAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
3196844 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
321 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
** * *
3196909 AAAATTTTTT-TGTGCATGCCAAAAAAAATAGAAGGATCACGTCTACCAAGTTT-GGGCCAAAAC
386 TGAATTTTTTGTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * * * **
3196972 TCCTTCC-GAAAAATTTTAAAAAATCCCAAACAGTAAAAAGTTTCGAAAATCGTGAAAAGGAAAA
451 TCCTTCCAAAAAAATTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAA
* *
3197036 AACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGC
515 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* **
3197101 CAAAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
580 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * *
3197166 TCGACGGCTTACGCAA-CCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGGCCGTTCGTTTC
645 TCCACGGCTTACG-AATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTC
* * * * * * *
3197230 GTCAGTTGGCTTAGGCATAC-GTAGTTCATTCCTAGTCTAAGATTGGATTGGACTAAGGGTTGCG
709 GTCGGTTGGCTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCGGACTAGAC-GAGGGTTGTG
* * * * * * * * * *
3197294 GCAGGAGGATCGACAGGACGTAGAAGGGG-TCCCGACCGATCCCCGACTTACGCATCGCGCCCCT
772 GCAGTAAGATTGGCAGCACGCAGAGGGGGAT-CCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * *
3197358 CTGGCCGGCTGAGCACCCGCACGCTCGTTCCGTGGATTGACTTAGGCATACGAAGTTCATTCCCA
836 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
3197423 GTCTAA
901 GTCTAA
* *
3197429 GCATACGGAGTTTATTCCCAGTTGAAGATC-AGACCAGACCGAGGGTT-CTGGTAGCACGTGCTG
1 GCATACGGAGTTTATTCCCAGTT-AAGATCGA-ACCAGACCGAGGGTTAC-GGCAGCACATGCTG
* * *
3197492 GGCTTGGGCATCTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGA
63 GGCTTGGGCATGTGCTGGTGCCATATTTTTCTTCGTC-GGGCACCATC--CGGAGCAT--CCGGA
* * * ** *
3197557 GAACCTGACCGACGGCATTGGGGTACCGGCGGCATTGGGGTTCCGGTGATCG-GGCGGTCGGGGG
123 GAACCTGACCGAC-ACATTGGGGCA-TGGCGGCATTGGGGTTCCGACGATCGAGG-GGCCGGGGG
* *
3197621 G-GTGCGCACATGATGTGC-AGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCT
185 GTGTGCGCACATGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCA
*
3197684 TCAAACCTTGAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
249 TCAAACCTCGAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
3197749 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGT
314 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * *
3197814 TTTTAGC-AAATTTTTTTTGTGCATGCCAACAAAAATACAAGCATCACGTCTACCAAGTTTCGGG
379 TTTTAGCTGAATTTTTTGTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * *
3197878 CCAAAGCACCTTTCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAA
444 CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC-GAACCGTAAAAAGTTTCAAAAATCATGAAA
* *
3197943 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATT
508 AATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*
3198008 TACAAGCCATAAAAATGGCATTGGCATGCAGATATATGAAGATGTGCCTAAACCCACCTACCACC
573 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * *
3198073 CTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGTCGAC---GT---CG--TGCCCGCCCGCT
638 CTATCGATCCACGGCTTACGAATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCT
* * * *
3198130 CGTTTCGTTGAATTGGCTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
703 CGTTTCGTCG-GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGA
3198184 TCGGACCGAG
Statistics
Matches: 3792, Mismatches: 382, Indels: 324
0.84 0.08 0.07
Matches are distributed among these distances:
856 99 0.03
857 17 0.00
858 203 0.05
859 6 0.00
861 1 0.00
863 3 0.00
864 1 0.00
867 3 0.00
868 1 0.00
869 1 0.00
870 27 0.01
871 290 0.08
872 6 0.00
873 1 0.00
874 2 0.00
875 75 0.02
877 4 0.00
881 4 0.00
882 20 0.01
883 80 0.02
884 8 0.00
885 22 0.01
886 10 0.00
887 257 0.07
888 8 0.00
890 1 0.00
891 1 0.00
892 4 0.00
893 1 0.00
894 2 0.00
896 6 0.00
897 106 0.03
898 27 0.01
899 26 0.01
900 61 0.02
901 104 0.03
902 60 0.02
903 64 0.02
904 1 0.00
905 2 0.00
906 17 0.00
907 38 0.01
908 6 0.00
909 264 0.07
910 3 0.00
911 17 0.00
912 294 0.08
913 235 0.06
914 260 0.07
915 32 0.01
916 179 0.05
917 573 0.15
918 256 0.07
919 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (906 bp):
GCATACGGAGTTTATTCCCAGTTAAGATCGAACCAGACCGAGGGTTACGGCAGCACATGCTGGGC
TTGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGCACCATCCGGAGCATCCGGAGAACCTGA
CCGACACATTGGGGCATGGCGGCATTGGGGTTCCGACGATCGAGGGGCCGGGGGGTGTGCGCACA
TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAG
AACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
TTTTTGTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
CCAAAAAAATTTTAAAAAATCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAG
TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
GCTTACGAATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGACGAGGGTTGTGGCAGTAAGA
TTGGCAGCACGCAGAGGGGGATCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:3195889 original size:12 final size:12
Alignment explanation
Indices: 3195872--3195902 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
3195862 GTGCTGATAC
3195872 TTGGCCCTTATA
1 TTGGCCCTTATA
3195884 TTGGCCCTTATA
1 TTGGCCCTTATA
3195896 TTGGCCC
1 TTGGCCC
3195903 CATATCCCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.29, G:0.19, T:0.39
Consensus pattern (12 bp):
TTGGCCCTTATA
Found at i:3197589 original size:17 final size:17
Alignment explanation
Indices: 3197564--3197602 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
3197554 GGAGAACCTG
*
3197564 ACCGACGGCATTGGGGT
1 ACCGGCGGCATTGGGGT
3197581 ACCGGCGGCATTGGGGT
1 ACCGGCGGCATTGGGGT
*
3197598 TCCGG
1 ACCGG
3197603 TGATCGGGCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.13, C:0.26, G:0.44, T:0.18
Consensus pattern (17 bp):
ACCGGCGGCATTGGGGT
Found at i:3199840 original size:26 final size:26
Alignment explanation
Indices: 3199804--3199854 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
3199794 TTGACTTAGG
3199804 CATACGGAGTTCATTCAC-AGTCTAAC
1 CATACGGAGTTCATTC-CTAGTCTAAC
3199830 CATACGGAGTTCATTCCTAGTCTAA
1 CATACGGAGTTCATTCCTAGTCTAA
3199855 GATCAGACCG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCTAGTCTAAC
Found at i:3200730 original size:26 final size:26
Alignment explanation
Indices: 3200694--3200746 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3200684 GTTGACTTAG
3200694 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3200720 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3200746 G
1 G
3200747 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3201614 original size:26 final size:26
Alignment explanation
Indices: 3201578--3201627 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
3201568 GTTGACTTAG
3201578 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3201604 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
3201628 GAGATCAGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3201999 original size:895 final size:897
Alignment explanation
Indices: 3199117--3202781 Score: 5179
Period size: 895 Copynumber: 4.1 Consensus size: 897
3199107 CCTGGTACTT
* * ** * *
3199117 CACATGATGTGCGATTGGTACTGGTACTTCACCCTTATATTGGCCTCCTATCCCTCATCAAACTT
1 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
3199182 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
66 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
3199247 GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
131 GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * * * *
3199312 GAATTTTTTTGTGCATGCCAACAAAAATATAGGGATCATGTCTACAAAGTTTAGG-GCCAAAATT
196 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGATCCAAAACT
*** * * *
3199376 CCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAATGTTTCAAAAATCGTGAAAAATAGAAA
261 CCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAA
* *
3199441 ATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
326 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
3199506 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGAT
391 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* ** * *
3199571 CCAGGGCTTGCGCATCCCACCTCTCTGCCCGACGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGT
456 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGT
* * ** ** *
3199636 TGGCTTAGGCAAACGGAGTTCATTCCCATTCTAAGATTGGACCAGACCGAGGGTTATGGCAGCAG
521 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGCAGCAA
* * ** * *
3199701 GATCGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCAGG
586 GATCGGCAGCACGCAGAGGGGGAACCGACCAATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGG
* * * *
3199766 CTAAGCGCCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAACC
651 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * ** *
3199831 ATACGGAGTTCATTCCTAGTCTAAGATCAGACCGAATGGAGGGTTGTGGCAGCACATGCTAGGCT
716 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCT
* * * * * *
3199896 CGAGCATGTGCTGGTGCAGCATTTTTTTTTGCCGGGGCACCATCATCGGAGCATCGTCGGAGAAC
781 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAAC
* * * * * *
3199961 TTGACCGACGGCATTGGGGTTCAGGCAATCAGGGGGGCCGAGGGGGTGTGCA
846 CTGACCGGCGACATTGGGGTTCCGGCAATCGGGGGGGCCGAGGGGGTGTGCG
*
3200013 CACATG-TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCT
1 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
3200077 CGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
66 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * * * *
3200142 GTATCTGAAATGGGGGACA-TTTTTTCAAATCGTCACAAAATCTTCTACAGTTCGAGTTTTTAGC
131 GTGTCTAAAAT-GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
3200206 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGAATCACGTCTACCATGTTTGGGA-CCAGAAA
195 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGATCCA-AAA
* * * *
3200270 -TCCTTCCAAAAAAATTTTTAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGA
259 CTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGA
* * *
3200334 AAACGAGTGGTCTTGCGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACGAG
324 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* *
3200399 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCG
389 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* *
3200464 ATCCGCGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTTGCTCG
454 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-----CC-C--GCTCA
* ** *
3200529 TTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTT
511 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* **
3200594 ----------G-T-GGCAGCACGCAGAGGGGG-ACCCAGCCAATCCCCGGCTTATACATCCCGCC
576 ACAGCAGCAAGATCGGCAGCACGCAGAGGGGGAACCGA-CCAATCCCCGGCTTACGCATCCCGCC
* * *
3200646 CCTCTGGCCGACTGAGCGACCGCACGCTGATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
640 CCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * * *
3200711 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGAGTTACGACAGCA
705 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCA
* * *
3200776 CATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT--------CA-
770 CATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCAT
* * * *
3200832 C--CGGAGAACCTGACCGG-TAGCAATGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCG
835 CGTCGGAGAACCTGACCGGCGA-CATTGGGGTTCCGGCAATCGGGGGGGCCGAGGGGGTGTGCG
* *
3200892 CACATGATGTGCGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTTTCCCTCATCAAACCT
1 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
3200957 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
66 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * * * *
3201022 GTGTTTGAAATGGGGATACTTTTTTCAAATGGTTACAAAATCTTGTACACTTTGAGTTTTTAGCT
131 GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
*
3201087 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT-GGATCCAAAACT
196 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGATCCAAAACT
* * * *
3201151 CCTTCCGAAAAATTTTTTAAAAATCCCAAACTGCAAAAAGTTTCGAAAATCGTAAAAAATAGAAA
261 CCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAA
* * * * *
3201216 ACGAATTGTCTTGCCATGAAACTTCACGTGATGTCTTATGGGACCATTGTATGAATTTACAAGCC
326 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
** * * *
3201281 ATAAAAATGGCATTGGCACATAGAAACATGAAGATGTGCCTAAACCCACCTGCCACCCTATTGAT
391 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* *
3201346 CCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCTCATTTCGTCGGT
456 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGT
* * * *
3201411 TGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAA
521 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGCAGCAA
* *
3201476 GATCGGCAGCACGCAGAGGGGGAACCGACCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGG
586 GATCGGCAGCACGCAGAGGGGGAACCGACCAATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGG
* *
3201541 CTGAGCGCCCGCACGTTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
651 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * *
3201606 ATACGGAGTTCATTCCCAGTCTGAGATCAGACCGGACCAAGGGTTGCAGCAGCACATGCTACGCT
716 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCT
* * * * * *
3201671 CGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGAGCACCATCGCCGGAGCATCGTCGAAAAAC
781 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAAC
*
3201736 CTGACCGGTGACATTGGGGTTCCGGCAATCGGGGGGGCC-AGGGGGTGTGCG
846 CTGACCGGCGACATTGGGGTTCCGGCAATCGGGGGGGCCGAGGGGGTGTGCG
*
3201787 CACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
1 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * * *
3201852 CGAGAACTCACACCCCCTTAAAGTGCATTTGACATTTTACAAGTTTACTGCCAGTAGCCATTAAA
66 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
3201917 GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT
131 GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
*
3201982 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGGTT-GGATCCAAAACT
196 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGATCCAAAACT
* *** *
3202046 CCTTCCGAAAAAATTTTAAAAAATCTCAAACAATAAAAAAGCTTCGAAAAAT-GTGAAAAATAGA
261 CCTTCCGAAAAAATTTTAAAAAATCCCAAAC-CGCAAAAAGTTTCG-AAAATCGTGAAAAATAGA
* *
3202110 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCACTGTATGAATTTACAAG
324 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * * *
3202175 CCATAAAAATGGCTTTAGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
389 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * *
3202240 ATCAACGGCTTGCGCATCTCGTCTCTCTGGTCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCG
454 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCG
*
3202305 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTACAGCAGC
519 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGCAGC
* * * * * * *
3202370 AAGATTGGTAGCACGTAGAGGGGGACCCGATCAATCCCCGGCTTGCGCATCCCGCCCCTTTGGCC
584 AAGATCGGCAGCACGCAGAGGGGGAACCGACCAATCCCCGGCTTACGCATCCCGCCCCTCTGGCC
* * * **
3202435 TGCTGAGCGCCCACACGCTCATTAT-GTGGGTTGACTTAGGCATACAGAGTAAATTCCCAGTCTA
649 GGCTGAGCGCCCGCACGCTCATT-TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * *
3202499 AGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGTGGTAGCACATGCTGG
713 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTAG
*
3202564 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCGTCGGAG
778 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAG
* * * * *
3202629 AACCTGGCCAGCGACATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGGTTGTGCG
843 AACCTGACCGGCGACATTGGGGTTCCGGCAATCGGGGGGGCCGAGGGGG-TGTGCG
*
3202685 CACATGATGTGCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
1 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
3202750 CGAGAACTCACACCCCCTTAAAGAGCATTTGA
66 CGAGAACTCACACCCCCTTAAAGAGCATTTGA
3202782 AGATCCCGCC
Statistics
Matches: 2472, Mismatches: 249, Indels: 94
0.88 0.09 0.03
Matches are distributed among these distances:
872 64 0.03
874 1 0.00
875 2 0.00
879 28 0.01
880 479 0.19
882 2 0.00
883 3 0.00
884 205 0.08
885 4 0.00
890 2 0.00
891 198 0.08
892 3 0.00
893 2 0.00
895 764 0.31
896 536 0.22
897 11 0.00
898 100 0.04
900 2 0.00
901 1 0.00
903 65 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGATCCAAAACT
CCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAA
ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGT
TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGCAGCAA
GATCGGCAGCACGCAGAGGGGGAACCGACCAATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGG
CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCT
CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAAC
CTGACCGGCGACATTGGGGTTCCGGCAATCGGGGGGGCCGAGGGGGTGTGCG
Found at i:3202510 original size:26 final size:26
Alignment explanation
Indices: 3202474--3202526 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3202464 GTTGACTTAG
3202474 GCATACAGAGTAAATTCCCAGTCTAA
1 GCATACAGAGTAAATTCCCAGTCTAA
* ** *
3202500 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTAAATTCCCAGTCTAA
3202526 G
1 G
3202527 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTAAATTCCCAGTCTAA
Found at i:3202876 original size:26 final size:26
Alignment explanation
Indices: 3202840--3202892 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3202830 GTTGACTTAG
*
3202840 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3202866 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3202892 G
1 G
3202893 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3203772 original size:26 final size:26
Alignment explanation
Indices: 3203734--3203786 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
3203724 GTTGATGTAG
* * *
3203734 GCATACGGGGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
3203760 GCATACAGAGTTCTTTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3203786 G
1 G
3203787 ATGGGACTAG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3204660 original size:26 final size:26
Alignment explanation
Indices: 3204630--3204682 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3204620 GTTGACTTAG
3204630 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3204656 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3204682 G
1 G
3204683 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3204777 original size:896 final size:897
Alignment explanation
Indices: 3202784--3212584 Score: 12718
Period size: 898 Copynumber: 10.9 Consensus size: 897
3202774 GCATTTGAAG
** *
3202784 ATCCCGCCCCTCTGGCCGGCTGAGCGCCTTCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
1 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
* * *
3202849 GTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAAGGTTA
66 GTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* * * * * *
3202914 C-AGCAGCACATGCTGGGATCAGGCAAGTGCTGGCGCAGCATTTTTCTTCACCGGGGCACCATCA
131 CGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCA
* * *
3202978 CCGGAG-AGTCGCCGGAGAACCTGACCGGTGGTAGTGGGGTTCCGACGATCGGTGGGGCCGAGGG
195 CCGGAGCA-TCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCC--GGG
* ** * **
3203042 GGGTTGTGCACACATGATGTAAGATGGGTGGTGGTACTTGGCTATTATATTGGCCCCCTATCCCT
256 GGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * * *
3203107 CATCAAACCTCAAGCACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGT
320 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
3203172 AGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCAA
385 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
*
3203237 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAATACAAGGATCATGTCTACCGAGTTTGG
450 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAC-AAAAATACAAGGATCATGTCTACCAAGTTTGG
* * * * **
3203302 GACCAAAACTCGTTCTGAAAAAATTTTAAAAAATCCCTGAACTGCAAAAAGTTTCAAAAATTATG
514 GGCCAAAACTCCTTCCG-AAAAATTTTAAAAAATCCC-GAACCGCAAAAAGTTTCAAAAATCGTG
* * *
3203367 AAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAATGCTTAAAGGACCATTGTATGA
577 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
3203432 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
642 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * *
3203497 ACCCTATTGATCCGCAGCTTGTGCATCCCGTCTCTCTGGTCGGCGTAGT--------GCCCGTCC
707 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCC
* * * ** *
3203554 GCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCCAGT-TAAGATCAG-CTGGACCGA
772 GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGA
* * * * * *
3203617 GGGTTGCGGCAGCAAGATCGGTAGCA--CATTGAGGGGGACCCGACCGATCCCCAGCTTGCGT
837 GGGTTGCGGCAGCAGGATCTGCAGCATGCA--GAGGGGGACCCGGCCGATCCCCGGCTTGCGC
*** * *
3203678 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCATTCGCTCATTTCGTGGGTTGA-TGTAGGCATACGG
1 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT-TAGGCATACAG
* * * * * *
3203742 GGTTCATTGCCAGTCTAAGCATACAGAGTTCTTTCCCAGTGTAAGATGGGACTAGACCGAGGGTT
65 AGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
* * * *
3203807 GCGACAGCACATGTTGGGCTCGGGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
130 GCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCA
* * * *
3203872 TCGGAGCATCGCCGGAGAACCTGACCGGTGACATTGGGGTTCCGACGATTGGGGGAGCCGGAGGG
195 CCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GCCGG-GGG
*
3203937 GTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
258 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* ** *
3204002 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAACTTCGCTGCCAGTAGC
323 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
3204067 CATTAAAGTGTCTAAAAT-GGGACACTTTGTTT-AAATGGTCACAAAATCCTGTACACTTCGAGT
388 CATTAAAGTGTCTGAAATGGGGACACTTT-TTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* ** **
3204130 TTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGATGC
452 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGC
* * *
3204195 TAAAACTCCTTCCGAAAAATTTTAAAAAATCTCGAACCGCATAAAGTTTCAAAAATCGTGAAAAA
517 CAAAACTCCTTCCGAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
*
3204260 TAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTA
582 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
** * *
3204325 CAAGAAATAAAAATTGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
647 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
3204390 ATCGATCCACGGCTCGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGTGCGC-CT
712 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCTC-
* ** * * * ** *
3204454 GTTTCATCGGTTAGCTCGGGCATATGTAGTT-ATTCCAAGTCTAAGATTGGATCAGACAGAGGGT
776 GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGT
* * * * * *
3204518 TGCGGTAGCAGGATCTGTAGCATGTAAAGGGGGA-CCGGCCAATCCCCGGCTTGCGT
841 TGCGGCAGCAGGATCTGCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGC
* *
3204574 ATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGA
1 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
3204639 GTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
66 GTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* * *
3204704 CGACTGCACATGCTGGGCTCGGGC-TGGTGCTGGTGCCACATTTTTCTTCGCCGGGGTACCATCA
131 CGACAGCACATGCTGGGCTCGGGCAT-GTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCA
* * * * *
3204768 CCGGAGCATCGTCGGAGAACCTAACCGACGCCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGG
195 CCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGG
* * *
3204833 GTGTGCGCACATGATGTGTGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCAT
258 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
3204898 CAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGC
323 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * * *
3204963 CATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACTAAATCATGTACAGTTCGAGTT
388 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * * **
3205028 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATGCAAGGATCACGTCCACCGAGTTTGATGCC
453 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCC
* * ** *
3205093 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACTACAAAAAGTTTTAAAAATCGTGAAAAA
518 AAAACTCCTTCCG-AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
* *
3205158 TAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTA
582 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
3205223 CAAGCCATAAAAATTGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCAACCACCCT
647 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* *
3205288 ATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGTCCG
712 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG----CCCGCCCGTCCG
* * ** * *
3205353 CTCGTTTCATCAGTTGGCTTAGGTATACAAAGTTCATTTCCAGTCTAAGATCAGACCAGACTGAG
773 CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAG
* * * * ** ** *
3205418 GGTTGCGACAGCAAGATCGGCAGCACGTTGAGGGGGACCCGGTTGATTCCCGGCTTGCGC
838 GGTTGCGGCAGCAGGATCTGCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGC
* * *
3205478 ATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATACAGA
1 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
* * * * *
3205543 GTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTATAAGATTGTACCAGACCGAGGGTTG
66 GTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* * * **
3205608 CGACAGCACATGCTTGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGAGGCACCATCGT
131 CGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCAC
* * * *
3205673 CAGAGCATCGTCGGAGAAACTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-
196 CGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGT
*
3205737 GTGCGCACAGGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
260 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * *
3205802 AACCTTGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCA
325 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
** * *
3205867 TTAAAACGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTT
390 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
3205932 TACCTGAATTCTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGAGGCCAA
455 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAA
* * *
3205997 AACTCCTTTCAAAAAATTTTAAAAAATCCCGAACCCCAAAAAGTTTCAAAAATCGTGAAAAATAG
520 AACTCCTTCCGAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAG
*
3206062 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
585 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * *
3206127 GCCATAAAAATTGCAATGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
650 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* *
3206192 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCATG-CGTAGTGCCCACCCGCCCG-CGCGCTCGT
715 GATCCACGGCTTGCGCATCCCGTCTCTCTGGC-CGACGTAGTGCCCGCCCGCCCGTC-CGCTCGT
* * * * * *
3206255 TTCATCGGTTAGCTCAGGCATATGTAGTT-ATTCCCAGTCTAAGATCGGATCAGACAGAGGGTTG
778 TTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTG
* * * * *
3206319 CGGTAGCAGGATCTGTAGCATGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGT
843 CGGCAGCAGGATCTGCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGC
* * * * *
3206374 ATCCCACCCCTCTGGCCAGCTGAGTGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACAGA
1 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
* *
3206439 GTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTG
66 GTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* * * * * * *
3206504 CGACAGCACATACTGGGCTCGGG-TTGGTGCTGGTGCCACATTTTTCTTCACCTGGGCACGATCG
131 CGACAGCACATGCTGGGCTCGGGCAT-GTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCA
* * * ** * ** *
3206568 TCGGAGCATCGTCGGAGAACCTAACCGATGCCATTAAGGTTCCGACAATCGGGGGGGCCGGGCGG
195 CCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGG-GG
* *
3206633 GTGTGCGCACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATTCCTCAT
258 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
3206698 CAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGC
323 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * * * *
3206763 CATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACTAAATCATGTACAGTTCTAGTT
388 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
*
3206828 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGAGGCC
453 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCC
*
3206893 AAAACTCCTTTCGAAAAATTTTAAAAAATCCCGAATCC-CAAAAAGTTTCAAAAATCGTGAAAAA
518 AAAACTCCTTCCGAAAAATTTTAAAAAATCCCGAA-CCGCAAAAAGTTTCAAAAATCGTGAAAAA
* *
3206957 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTCA
582 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * *
3207022 CAAGCCACAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACATAAACCCACCTACCACCTT
647 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
*
3207087 ATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCGCTCCCG
712 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CC-CG-T-CCG
* * ** *
3207152 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACTGGACTGAG
773 CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAG
* * * * *
3207217 GGTTACGACAGTAGGAT-TGGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGTGC
838 GGTTGCGGCAGCAGGATCT-GCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGC
* * *
3207277 ATCCCGCCCCTCTAGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
1 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
*
3207342 GTTCATTCCCAGTCTAAGCATAC-GTAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTT
66 GTTCATTCCCAGTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
* * * * *
3207406 GTGGCAGCACGTGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCTCCATCA
130 GCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCA
* *
3207471 CCGGAGCATCGCCGGAGAACCTGACCAGTGGCATTGGGGTTCCGACGATCGGGGGAGCCAGGGGG
195 CCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GCC-GGGGG
*
3207536 CGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCT-A
258 -GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
3207600 CTCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
322 -TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
** * *
3207665 GCCATTAAAGTGTCTGAAATTTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGGG
386 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
*
3207730 TTTTTAGCTGAATTTTTTTGTGCATGCCAACGAAAATACAAGGATCATGTCTACCAAGTTTGGGG
451 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG
** * * * *
3207795 CCAAAACTCCTTCTAAAACAATTTTAAAAAATCCAGAACCACAAAAAGTTTCACAAATCATGAAA
516 CCAAAACTCCTTCCGAAA-AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAA
* * * *
3207860 AATAAAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACAATTGTATGAATT
580 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* ** *
3207925 TAAAAGCCATAAAAATGGCATTGGCACACACAAATATGAAGATGTGCCTAAACCCACCTACCACC
645 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * *
3207990 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCAGGCGTAGTGCCCGCCCGCCCGTCCGCT
710 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCT
* * * *
3208055 CATTTCGTCGGTTGGCTTAGGCATACGAAGTTAATTCCCAGTCTAAGATCAGACCAGATCA-AGG
775 CGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CAGAGG
* * * * * * * *
3208119 GTTACGACAGCAGGATCAGCAGCATGTAGAGGGGGGCCCAGCTGATCCCCGGCTTGTGC
839 GTTGCGGCAGCAGGATCTGCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGC
* * * *
3208178 ATCTCGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCG-TTCTGTGGGCTGACTTAGGCATACGG
1 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC-GTGGGTTGACTTAGGCATACAG
* * * * *
3208242 AGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTT
65 AGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
** * * * * * *
3208307 GCGGTAGCACATGCTGGGCTCAGGCATGTGTTGGTGCCACATTTTTCTTTGTCAGGGCACCAT--
130 GCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCA
* * *
3208370 ------CA---CCGGAGAACCTGACCGGCGGCATTGAGGTTCCGGCGATCGGGGGGTCGGGGGGG
195 CCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGG
* *
3208426 TGTGCGCACATGTTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATC
259 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
3208491 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCC
324 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * *
3208556 ATTAAAATGTCTGTAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTT
389 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
3208621 TTAGCTGAATTTTTTTGTGCATCCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGG-CA
454 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCA
*
3208685 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
519 AAACTCCTTCCG-AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
*
3208750 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTAC
583 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * *
3208815 AAGCCATAAAAATGGCATTGGCATGCACAAATATGAAGATGTGCCTAAGCCGACCTCCCACCCTA
648 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* *
3208880 TCGATCCATGGCTTGCGCATACCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CCTGCTCG
713 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCC-GCTCG
* * * *
3208944 TTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCCAAGATCAGACCAGACTGAGGGTT
777 TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTT
* * * * *
3209009 GTGACAGCAGGATC-GATAGCATGCAGAGGGGGACCCGGTCGATCCCTGGCTTGCGC
842 GCGGCAGCAGGATCTG-CAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGC
** * * * * * *
3209065 ATCCCGTTCCTTTGGCCAGCTGAGCGCCCGCACGTTCATTTCGTAGGTTGACTTAGGCATACAGC
1 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
* *
3209130 GTTCATTCCCAGTCTAAG-AT-C-G-G---------A--C-----T--G----GACCGAGGTTTA
66 GTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* * * * * * *
3209169 C-AGCAGCACATACTGGGCTCAGGCATGTGTTGGTGCGGCATTTTTCTTCACCTGGGCACCATCG
131 CGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCA
** * * *
3209233 CCGGAGCATCGTTGGATATCCTGACTGGCGGCATTGGGGTTCCGACGATCGGCGGGGCCGGGGGG
195 CCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGG
* * *
3209298 TGTGCACACATGATGTGTGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATC
259 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
**
3209363 AAACCTCGAGAACTCACATGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
324 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
3209428 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
389 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
3209493 TTAGCTGAATTTTTTTGTGAATGCCAACAAAAATACAAGGATCACT-TCTACTAAGTTTGGGACC
454 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA-TGTCTACCAAGTTTGGGGCC
* * *
3209557 AAAAGTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAGGTTTCAAAAAT--T-----A
518 AAAACTCCTTCCG-AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
*
3209615 T-G--AA--A-----C-T----T---A----ACGTGAAAGCTTAAGGGACCATTGTATGAATTTA
582 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* ** *
3209658 CAAGCCATAAAAATGGCATCGGCATGCAGAAATATGAAGATGCACCTAAACCCACGTACCACCCT
647 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* *
3209723 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTTTCCCGCCCGCCCGCCCG
712 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG----CCCGCCCGCCCGTCCG
* * * * *
3209788 CTTGTTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATAGAG
773 CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAG
* * ** * * * * * *
3209853 GGTTGTGGCAGCAGGATCGGCAGCATTTACAGGGGGACCCGACCAATTCCTGGCTTACGC
838 GGTTGCGGCAGCAGGATCTGCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGC
* * * * *
3209913 ATCCCG-CCCTCTGGCCAGTTGAG-GACCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGG
1 ATCCCGCCCCTCTGGCCGGCTGAGCG-CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG
* * * **
3209976 AGTTAATTCCCAGTCTAAGCATACGGAGTTCTTTCCCAGTCTAAGATCAAACCAGACCGAGGGTT
65 AGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
* ** * *
3210041 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAACGGTGCACCATCG
130 GCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCA
* * * * * *
3210106 TCGAAGCATCGTCGGAGAATCTGACCGGCGGCATTAGGGTTCTGACGATCGGGGGGCCGGGGGGT
195 CCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGT
3210171 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
260 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * *
3210236 AACCTCGAGAATTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTTCTGCCAGTAGCCA
325 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
3210301 TTAAAGTGTCTGAAATGGGGACA-TTTTATTCAAATGGTCACAAAATCTTGTACTCTTCGAGTTT
390 TTAAAGTGTCTGAAATGGGGACACTTTT-TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
3210365 TTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
454 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCA
* * * *
3210430 AAACTCCTTCCAAAAAAATTTTAAAAAATTCTGAACCGCAAAAAGTTTCCAAAATCGTGAAAAAT
519 AAACTCCTTCC-GAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
* * *
3210495 AGAAAATGAGTCGTCTTGCCAGGAAACTTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTAC
583 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
3210560 AGGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
648 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* ** *
3210625 TCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGTGTAGTGCCAC-CCCGCCCGTCCGCTCA
713 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC-CGCCCGCCCGTCCGCTCG
* * * * *
3210689 TTTCAACGGTTGGCTTAGGCATGCAGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTT
777 TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTT
* * * * * ** * *
3210754 ACGGTAGTAGGAT-TGACAGCACGCAGAGGGTGACCTAGTCGATCCCCGACTTGCGC
842 GCGGCAGCAGGATCTG-CAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGC
* *
3210810 ATCCCGCCCCTCAGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GA
1 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
*
3210874 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAAT
66 GTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C---
* * * *
3210939 CTAAGATTGGATCGGAGCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCAC
117 C----A---GA-C----CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
** * *
3211004 ATTTTTCTTCATCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACTGGCGGCATTGGGGT
170 ATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGT
* * *
3211069 TCCGACGATCGGAGGGCC-AGGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGG-CCT
235 TCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* * *
3211132 TATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCGCCTTGAAGAGCATTTGAGAT
300 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
3211197 TTTATAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
365 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
3211262 CAAAATCTTGTACACTTCGAGTTTTTAGGTGAATTTTTTTGTGCATGCCAACAAAAAAACAAGGA
430 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* ** * * * * *
3211327 TCACGTCTAAAAAGTTCGGGGCAAAAACTCCTTCCAAAAAAATTTCAAAAAATCCCGAACCGTAA
495 TCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAAAATTTTAAAAAATCCCGAACCGCAA
* * *
3211392 AAAGTTTCAAAAATCTTCAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGAT
559 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* *
3211457 TAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATG
624 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * *
3211522 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCTGACATA
689 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
* * * * *
3211587 GAGCCCGCCCG--C--CCGCTCATTTCAACGGTTGGCTTAGGCATGCAGAGTTCATTCCCAGTCT
754 GTGCCCGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * *
3211648 AAGATCAGACC-GAACCA-AGGGTTGTGGCAGTAGGATC-GACAGCACGCAGAGGGTGACCCAGT
819 AAGATCAGACCAG-A-CAGAGGGTTGCGGCAGCAGGATCTG-CAGCATGCAGAGGGGGACCCGGC
*
3211710 CAATCCCCGGCTTGCGC
881 CGATCCCCGGCTTGCGC
* * * ** *
3211727 ATCCCGCCCCT-TAGGCCGGTTGTGTGCCCTTACGCTCATTTCGTGGGTTGACTTAGGCATACAG
1 ATCCCGCCCCTCT-GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG
** *
3211791 AGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTT
65 AGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
* * *
3211856 ACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCA
130 GCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCA
* * * * * * *
3211921 CCGGAGCATCACCGGAGAACCTGACAGACGGCATTAGGGTTCTGGCGA-CCGGGGGCCGGGGGGT
195 CCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGT
*
3211985 GTGCGCACATGATGTGCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
260 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
3212050 AACCTCGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
325 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
3212115 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
390 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
*
3212180 TAGCTGAATTGTTTTT-TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCA
455 TAGCTGAATT-TTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCA
** * ** * *
3212244 ATAAAACCTTCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATTAAAAA
519 A-AACTCCTTCCG-AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
* * * *
3212309 TAAAAAACGAGTCGTCTTACCATGAAACTTCATGTGAAGGCTTAAGGCACCATTGTATGAATTTA
582 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
3212374 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATTATGATGTGCCTAAACCCACCTACGACCCT
647 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * *
3212439 ATCGATCCACGGCTTGCGCATCTCGTATCTCTGGCTGACATAGAGCCCGCCCGTCCGCCCGCCCG
712 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT--AG--TG--C--CCGCCCGCCCG
* * **
3212504 CCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACC
769 --T--CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
*
3212569 GGATC-GAGGGTTGCGG
830 AGA-CAGAGGGTTGCGG
3212585 TGCCGCATTT
Statistics
Matches: 7871, Mismatches: 828, Indels: 400
0.87 0.09 0.04
Matches are distributed among these distances:
844 131 0.02
846 1 0.00
847 63 0.01
848 128 0.02
849 4 0.00
850 1 0.00
851 2 0.00
855 1 0.00
856 1 0.00
860 1 0.00
861 62 0.01
862 1 0.00
863 2 0.00
865 2 0.00
866 2 0.00
867 2 0.00
869 2 0.00
871 5 0.00
872 578 0.07
873 167 0.02
874 2 0.00
879 2 0.00
880 1 0.00
882 2 0.00
883 1 0.00
884 2 0.00
885 1 0.00
886 6 0.00
887 402 0.05
888 433 0.06
889 26 0.00
890 82 0.01
891 74 0.01
892 290 0.04
893 213 0.03
894 431 0.05
895 13 0.00
896 718 0.09
897 353 0.04
898 737 0.09
899 7 0.00
900 7 0.00
901 625 0.08
902 329 0.04
903 350 0.04
904 513 0.07
905 208 0.03
907 1 0.00
908 1 0.00
910 63 0.01
911 3 0.00
914 1 0.00
915 2 0.00
917 173 0.02
918 48 0.01
919 2 0.00
920 1 0.00
921 432 0.05
922 44 0.01
923 116 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
GTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
CGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCAC
CGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTG
TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAA
ACTCCTTCCGAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGA
AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCTCGTTTC
ATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGCGG
CAGCAGGATCTGCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGC
Found at i:3205586 original size:26 final size:26
Alignment explanation
Indices: 3205534--3205586 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3205524 GTTGACTTAG
*
3205534 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATATAA
* *
3205560 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACAGAGTTCATTCCCAATATAA
3205586 G
1 G
3205587 ATTGTACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATATAA
Found at i:3206460 original size:26 final size:26
Alignment explanation
Indices: 3206430--3206482 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3206420 GTTGACTTAG
3206430 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
3206456 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3206482 G
1 G
3206483 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3207370 original size:26 final size:26
Alignment explanation
Indices: 3207333--3207385 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3207323 GTTGACTTAG
3207333 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3207359 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3207385 G
1 G
3207386 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3208263 original size:26 final size:26
Alignment explanation
Indices: 3208234--3208286 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3208224 GCTGACTTAG
*
3208234 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3208260 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3208286 G
1 G
3208287 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3209997 original size:26 final size:26
Alignment explanation
Indices: 3209968--3210020 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3209958 GTTGACTTAG
3209968 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
**
3209994 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
3210020 G
1 G
3210021 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:3210904 original size:26 final size:26
Alignment explanation
Indices: 3210866--3210943 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
3210856 GTTGACTTAG
3210866 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3210891 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3210917 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3210943 G
1 G
3210944 ATTGGATCGG
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
25 6 0.12
26 45 0.88
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3215163 original size:26 final size:26
Alignment explanation
Indices: 3215127--3215179 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3215117 GTTGACTTAG
*
3215127 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3215153 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3215179 G
1 G
3215180 ATCTAATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3216065 original size:26 final size:26
Alignment explanation
Indices: 3216029--3216081 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3216019 GTTGACTTAG
3216029 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
3216055 GCATACGGAGTTGATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3216081 G
1 G
3216082 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3218719 original size:26 final size:26
Alignment explanation
Indices: 3218683--3218735 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3218673 GTTGACTTAG
3218683 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
3218709 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3218735 G
1 G
3218736 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:3218861 original size:897 final size:898
Alignment explanation
Indices: 3216922--3223094 Score: 7926
Period size: 897 Copynumber: 6.9 Consensus size: 898
3216912 GTTGACTTAG
* * * * *
3216922 GCATACGAAGTTCATTCCCAGTATAAGATCGGACCGGACCGAGGGTTGCAATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
3216987 CTC-GAGCATGTGCTGGTGCCGTATTTTTCATCG-CTAGGGCACCATCG-TCAGAGCATCGCCGG
66 CTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGCCGA-GGCACCATCGCT-GGAGCATCGCCGG
* * *
3217049 AGAACCTGACCGGTGGCATTGGGGTTCCGGCGATCGGGGGGC-CGGGGGTGTGCGCACATGATGT
128 AGAACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGCGAGGGGGTGTGCGCACATGATGT
* * * *
3217113 GTGATGGGTGCTAGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
3217178 CACCCTCTTAAAGAGCATTTGAGATTTTATAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
3217243 TGGGGACAATTTTTTCAAATGGTCACAAAATCTAGTACACTTCGAGTTTTT-GCTGAATTGTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
3217307 GTGCATGCCAACAAAAATACAAGGATGACGTCTACTAGGTTTGGGGCCAAAACTCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
3217372 AATTTAAAAAAATCTCGAACAGCAAAAAGTTT-AAAAATCGTGAAAAATAAAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * ** *
3217436 TGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCACGAAATTGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** *
3217501 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * **
3217566 ACATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCAGCTCGTTTCGTTAGTTGGCTTA
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * * *
3217627 GGCATACGGAGTTCATTCCCAGTTTAAGATTGGACTGGACTGAGGGATGCGGTAGCAGGA-CGGC
713 GGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* ** * *
3217691 AGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTATGCATCCCGCCCCTCTGGTCGGCTGAGCG
778 AGCACGCAGAGGGGGACCCGGCCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCG
* * * *
3217756 CCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAATCCTAATCTAA
843 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * ** * *
3217812 CCGTACAGAGTTCATTGCCAGTTTAAGATCGGACCGGACCGATAGTTGGGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * ** * * * *
3217877 CTCGGGCATGTGCTGGTGTCGCATTTCTCTTCGTTGGGGCACCACCGCCGGAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGCTGGAGCATCGCCGGAGA
* * * * * *
3217942 ACCTGACCGACGGCATTGGGGTTCTAGCGATTGGGGGGCGTAGGGGGTGTGCGCAGATGATATGA
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGCG-AGGGGGTGTGCGCACATGATGTGC
* * *
3218007 GATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
3218072 CCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
3218137 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
3218202 GCATGCCAACAAAGATACAGGGATCACGTCCACCAAATTTGGGGCCAAAACTCCTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * ** * *
3218267 TTTTAAAAAATCCCGAACAGCAAAAAGTTTTGATAATCTTGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * *
3218332 CCATAAAACTTCACGTGAAGGCTCAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
3218397 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
3218462 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCTCATTTCGTCGGTTGGCTTAGG
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * *
3218527 CATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGTTTGGGGCAACAGGATTGGCAG
715 CATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
* * * * * * * * *
3218591 CAAGCAGA-GGGGACCCGGCTAAGCCCCGGCTTGCGTATCCCACCCATTTGGCCGGCTGAGCACC
780 CACGCAGAGGGGGACCCGGCCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCC
* * * * *
3218655 CACACGATTGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
845 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
3218709 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCGATAGCACATGCTGAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
** * *
3218774 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGCTAAAGTATCACCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGCTGGAGCATCGCCGGAGA
* * * * *
3218839 ACCTAACCGGCGGCATTGGGGTTCCGACGAACGGAGGGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGG-GGGG-CGAGGGGGTGTGCGCACATGATGTG
* * * *
3218904 CGATGGGTGCTAGTACTTGGCCCATATATTGGCCCCCTATCCCTAATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* ** *
3218969 ACCCCCTTAAAGAGCCTTTGAGATTTTACAGGTTCACTGCCAGTAGCCATTAAAGTGTTTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * * **
3219034 AGGGACACTTTTTCCAAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGGTGAATGTTACT
324 GGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
3219099 GTGCATGCCAAAAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
3219164 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
3219229 TGCCATGAAACTTCACGTGAACGCTGAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
3219294 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
3219359 GCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
*
3219424 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGAT
709 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGAT
* ** * * * *
3219489 CGACAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGTATCCCGCCCCTCTAGTCGACTG
774 CGACAGCACGCAGAGGGGGACCCGGCCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTG
**
3219554 AGCGCCCGCATTCTCGTTTCGTGGG-TGACTTAGGCATACGGAGTTCATTCCCAG--T--
839 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
3219609 -C-TA---AG---A-T--C-G-----GATCA-A----ACTGAGGGTTGCGGCAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* *** * * * ***
3219652 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCATTGGGGCAGCATCGCCGGAGCATCGTTAGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGCTGGAGCATCGCCGGAGA
* * * * * * * *
3219717 ACCTGACCAGCGGCTTTGGGGTTCTGGTGATCAGGGGGTCGGGGGGGTGCGCGTACATAATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGATC-GGGGGGCGAGGGGGTGTGCGCACATGATGTGC
* *
3219782 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
3219847 CCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
3219912 GGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTGTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
3219977 GCATGCCAA-AAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
3220041 TTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
3220106 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
3220171 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
3220236 ATCCCGTCTCTTTGGTCGGCGTAGTGCCCACCCGCCCGCCCGCCCGATCGTTTTGTCGGTTGGCT
650 ATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
** * * * * *
3220301 TAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAAGATCG
711 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCG
* * * * *
3220366 GCAGCACGCAGAGGGGGACCCGGCCGATCACCAGCTTGCGCATCCCGCCCCACTGGCCGACTGAG
776 ACAGCACGCAGAGGGGGACCCGGCCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAG
* * * *
3220431 CGCCCACACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCGAA
841 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * * *
3220489 GCATACGGAGTTCTTTCCTAGTCTAAAATTGGACCAGATCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
3220554 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCTGGAGCATCACCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGCTGGAGCATCGCCGGAGA
* * * * *
3220619 ACCTGACAGGCAGCATTGGGGTTCCGGCGATCGGGGGG-GTTGTGGGGTGTGCACACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGCG-AG-GGGGTGTGCGCACATGATGTG
* *
3220683 CGATGGGTGCTGGTACTTGG-----AAATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
** * *
3220743 ACCCTTTTAAGGAGCATTTGAGATTTTACAGGTTTGGTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
3220808 GGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
3220873 TGCATGCCAACAAAAATACAAGGATCATGTCTA-CAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
3220937 ATTTTTAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
3221002 CCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
3221067 TTGGCATGCATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
3221132 CAGCCCGTCTCTCTTGCCGGCGTAGTGCCTACCCGCCTGCCCGCCCGGTCGTTTCGTCGGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * ** * * *
3221197 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACTGAGGGTTGCGGCAGCAAGATT
710 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATC
* * * * * *
3221262 GACAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGTGCATCCCGCCCCTTTGGCCGACTGA
775 GACAGCACGCAGAGGGGGACCCGGCCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGA
* *
3221327 GCGCCCGCAAGCACGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
3221386 -CATACGGAGTTCTTTCCCAGTCCAAAATCAGACTGGATCAAGGGTTAC-AGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA-CAGCACATGCTGG
* * * *
3221449 GCTCAGGCATGTGCTGGTGTCACATTTTTCTTCACC-AGGGCACCATCG-TCGGAGCATCACCGG
65 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGA-GGCACCATCGCT-GGAGCATCGCCGG
** * * * *
3221512 AGAACCTGACAAGTGGCATTGGGGTTCTGACGATTGGGGGGGCCG-GGGGGTGTACGCACATGAT
128 AGAACCTGACCGGCGGCATTGGGGTTCTGGCGA-TCGGGGGG-CGAGGGGGTGTGCGCACATGAT
3221576 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
3221641 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTATAGTGTCTAA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
3221706 AATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTTGAGTTTTTCA-CTGAATTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-AGCTGAATTTT
* * * *
3221770 TTTGTGCACGCCAA-AAAAGATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCTTTCTG
385 TTTGTGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * *
3221834 AAAAAAATTTTAAAAAATCTCGAACCGTAAAATGTTTCAAAAATCTTGAAAAATAGAAAACGAGT
449 -AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* *
3221899 CATCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
513 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
3221964 ATGGCATTGGCATGCAAAAATATGAAGAAGTGCC-AAACCCACCTACCACGCTATCGATCTACGG
578 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
3222028 CTTGTGCATCCCGTCTCTCTAGCCGGCGTAGT----GCCCGCCCGTCCACTCGTTTTGTCGGTTG
643 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * *
3222089 GCTTAGGCATAC-GAGGTTGATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCAGG
708 GCTTAGGCATACAGA-GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGG
* * * * * * *
3222153 ATCGATAGCACGTAGAGGGGGACCCGGTCAATCCCTGGCCTGCGCATCCCGCCCCTCTGGCTGGC
772 ATCGACAGCACGCAGAGGGGGACCCGGCCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
* * * *
3222218 TGAGCGTCCGCACGCTCGTTCCATGCGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *** * * * * *
3222280 GCATACGGAGTTCCTTCTTTGTCTAAGAT-AGGACCAGACTGAGAGGTTCCAATAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCGGACCGAG-GGTTGCGACAGCACATGCTG
* * * *
3222344 GGCTC-GAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCACCGGAGCATTGCCGG
64 GGCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGCTGGAGCATCGCCGG
* * * * * *
3222408 AGAACCTTACCGAG-GGCATTGGGGTTCCGACGGTTGGGGGTGCCGA-GGGGTGTGTGCACATGA
128 AGAACCTGACCG-GCGGCATTGGGGTTCTGGCGATCGGGGG-G-CGAGGGGGTGTGCGCACATGA
** * ** * *
3222471 TGTTTGATGGGTGGTACTACTTGGCCCTGATATTGGCCGCCTATCCCTCATCAAACCTCGAGAAC
190 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
3222536 TCACACCCCCTAAAAGAGCATTTGCGATTTTACAGTTTTGCTGCCAGTAGCCATTAATA-TGTCT
255 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA-AGTGTCT
* * *
3222600 GAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATTG
319 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * ** *
3222665 TTTTGCGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGAAAAAACTCCTTCCA
384 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
*
3222730 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
449 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
3222795 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
3222860 TGGCATTGGCATGCAGAAATATGAAGATGTGCGTAAACCCACCTACCAACCTATCGATCCACGGC
579 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
3222925 TTACGCATCTCGTCTCCCTGGCCGG-GTTAGTGCCCACCCGTCCGCTCGCTCGCTCATTTCGTCG
644 TTGCGCATCCCGTCTCTCTGGCCGGCG-TAGTGCCCGCCCG--C-C-CGCCCGCTCGTTTCGTCG
* * * * * *
3222989 GTTGGCTTAGGCATACAGAGTTCCTTCCCAGTCTAAGATTGGACCAGATCGAGGGTTACGGTAGC
704 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGC
* ** * *
3223054 AGGATCGGCAGCACATAGAGGGGGACCCGACCGATCCCCGG
769 AGGATCGACAGCACGCAGAGGGGGACCCGGCCAATCCCCGG
3223095 GGGGTGTGCG
Statistics
Matches: 4603, Mismatches: 584, Indels: 178
0.86 0.11 0.03
Matches are distributed among these distances:
871 2 0.00
873 1 0.00
875 418 0.09
876 82 0.02
877 153 0.03
878 102 0.02
879 2 0.00
881 1 0.00
882 3 0.00
883 5 0.00
885 2 0.00
888 1 0.00
889 2 0.00
890 137 0.03
891 2 0.00
892 187 0.04
893 102 0.02
894 359 0.08
895 196 0.04
896 564 0.12
897 887 0.19
898 226 0.05
899 309 0.07
900 9 0.00
901 189 0.04
902 222 0.05
903 196 0.04
904 185 0.04
905 59 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGCTGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGCGAGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGC
ACGCAGAGGGGGACCCGGCCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:3223700 original size:640 final size:641
Alignment explanation
Indices: 3222454--3223732 Score: 1936
Period size: 640 Copynumber: 2.0 Consensus size: 641
3222444 GGGGTGCCGA
* ** * *
3222454 GGGGTGTGTGCACATGATGTTTGATGGGTGGTACTACTTGGCCCTGATATTGGCCGCCTATCCCT
1 GGGGTGTGCGCACATGATGTGCGATGGGTGCTACTACTTGGCCCTGATATTGGCCCCCTATCCCT
* *
3222519 CATCAAACCTCGAGAACTCACACCCCCTAAAAGAGCATTTGCGATTTTACAGTTTTGCTGCCAGT
66 CATCAAACCTCGAGAACTCACACCCCCTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
3222584 AGCCATTAATATGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
131 AGCCATTAATATGTCTGAAATGGAGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
3222649 GTTTGTAGCTGAATTGTTTTGCGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGG
196 GTTTGTAACTGAATTGTTTTGCGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* *
3222714 GAAAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAA
261 GAAAAAACCCCTTCCAAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAA
3222779 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAAT
326 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAAT
* ** * *
3222844 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCGTAAACCCACCTACCAA
391 TTACAAGCCAGAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCAA
* * * * *
3222909 CCTATCGATCCACGGCTTACGCATCTCGTCTCCCTGGCCGGGTTAGTGCCCACCCGTCCGCTCGC
456 CCTATCGATCCACGGCTTACGCATCCCGCCTCCCTGGCCGGGTAAGTGCCCACCCGCCCGCCCGC
* * * * ** * * *
3222974 TCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCCTTCCCAGTCTAAGATTGGACCAGATC
521 CCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATATAAGATCAGACAAAACC
* *
3223039 GAGGGTTACGGTAGCAGGATCGGCAGCACATAGAGGGGGACCCGACCGATCCCCGG
586 GACGGTTACGGTAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGG
** *
3223095 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
1 GGGGTGTGCGCACATGATGTGCGATGGGTGCTACTACTTGGCCCTGATATTGGCCCCCTATCCCT
*
3223160 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
66 CATCAAACCTCGAGAACTCACACCCCCTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
3223225 AGCTATTAA-AGTGTCTTAAATGGAGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
131 AGCCATTAATA-TGTCTGAAATGGAGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
3223289 AGTTT-TAACTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
195 AGTTTGTAACTGAATTGTTTTGCGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
** * **
3223353 GGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTGGAAAATCATGA
260 GGAAAAAACCCCTTCCAAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGA
* *
3223418 AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
325 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAA
* * *
3223483 TTTACAAGCCCGAGAAATGGCATTGGCACACAGAAATATGGAGATGTACCTAAACCCACCTACCA
390 TTTACAAGCCAGAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCA
* * * * * *
3223548 CCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGCC-CGTGAAGTGCCCGCCCGCCCGCCC
455 ACCTATCGATCCACGGCTTACGCATCCCGCCTCCCTGGCCGGGT-AAGTGCCCACCCGCCCGCCC
* *
3223612 GCCCGCTCTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATATAAGATCAGACAAAA
519 GCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATATAAGATCAGACAAAA
** * *
3223677 CCGACGGTTGTGGCT-GTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC
584 CCGACGGTTACGG-TAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCC
3223733 AGCATGCGCA
Statistics
Matches: 572, Mismatches: 63, Indels: 7
0.89 0.10 0.01
Matches are distributed among these distances:
639 2 0.00
640 386 0.67
641 184 0.32
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (641 bp):
GGGGTGTGCGCACATGATGTGCGATGGGTGCTACTACTTGGCCCTGATATTGGCCCCCTATCCCT
CATCAAACCTCGAGAACTCACACCCCCTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCCATTAATATGTCTGAAATGGAGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
GTTTGTAACTGAATTGTTTTGCGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
GAAAAAACCCCTTCCAAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAAT
TTACAAGCCAGAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCAA
CCTATCGATCCACGGCTTACGCATCCCGCCTCCCTGGCCGGGTAAGTGCCCACCCGCCCGCCCGC
CCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATATAAGATCAGACAAAACC
GACGGTTACGGTAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGG
Found at i:3223834 original size:26 final size:26
Alignment explanation
Indices: 3223798--3223850 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3223788 GTTGACTTAG
*
3223798 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3223824 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3223850 G
1 G
3223851 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3226123 original size:173 final size:174
Alignment explanation
Indices: 3225925--3226273 Score: 515
Period size: 173 Copynumber: 2.0 Consensus size: 174
3225915 GGGTTGCGGC
* *
3225925 AGCAGGATCGACAGCATGCAGAGGGGCACCC-AGCCGATCCCCGACTTGCGCATCCCGCCCCTCT
1 AGCAGGATCGACAGCACGCAGAGGGGCACCCGA-CCGATCCCCGACTTGCGCATCCCACCCCTCT
* * *
3225989 GGCCGGTTGAAC-GCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCATAG
65 GGCCGGCTGAACAGCCCGCACACTCCTTTCATCGGTTGACTTAGGCATACGGAGTTCATTCATAG
** *
3226053 TC-AAGCATGTGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCG
130 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA-ACCG
* *
3226098 AGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTG
1 AGCAGGATCGACAGCACGCAGAGGGGCACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTG
** * * * *
3226163 GTTGGCTGAGCAGCCCGCACGCTCCTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCTAGT
66 GCCGGCTGAACAGCCCGCACACTCCTTTCATCGGTTGACTTAGGCATACGGAGTTCATTCATAGT
3226228 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAACCG
131 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAACCG
3226272 AG
1 AG
3226274 GTTACGGCAG
Statistics
Matches: 157, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
173 66 0.42
174 56 0.36
175 35 0.22
ACGTcount: A:0.21, C:0.32, G:0.27, T:0.20
Consensus pattern (174 bp):
AGCAGGATCGACAGCACGCAGAGGGGCACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTG
GCCGGCTGAACAGCCCGCACACTCCTTTCATCGGTTGACTTAGGCATACGGAGTTCATTCATAGT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAACCG
Found at i:3226242 original size:26 final size:26
Alignment explanation
Indices: 3226206--3226258 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3226196 GTTGACTTAG
*
3226206 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3226232 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3226258 G
1 G
3226259 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3227127 original size:26 final size:26
Alignment explanation
Indices: 3227097--3227149 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3227087 GTTGACTTAG
*
3227097 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
*
3227123 GCATATGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
3227149 G
1 G
3227150 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:3228411 original size:875 final size:875
Alignment explanation
Indices: 3226232--3229683 Score: 4556
Period size: 884 Copynumber: 3.9 Consensus size: 875
3226222 CCTAGTCTAA
* *
3226232 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-AACCGA-GGTTACGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
3226295 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
* *
3226360 ACCTGACCGACGACATTGGGGTTCCGACGATC-GGGGGCC-GGGGGGTGTGCGCACATGACGTGC
131 ACCTGACCGATG-CATTGGGGTT-CGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * * * * * *
3226423 GATGGGTGCTAGTACTTGGCCCATATATTGGCCCCCTATTCTTCATAAAACCTTGAGAACTCACT
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
3226488 CCCCCTTAAAGAGCATTTGAGATTTTACACGTTTGCTGCCAGTAGCCGTTGAAGTGTCTGGAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
3226553 GGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
3226618 GCATACCAACAAAAATACAAGGAAT-ATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAA
389 GCATGCCAACAAAAATACAAGG-ATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCTGAAAAA
* * * *
3226682 ATTTGAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATGGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
3226747 GCCATGAAACTTAACGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
3226812 TTGGCATGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGACTTGCG
583 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
3226877 CATCCCGTCTCTCTGGTCGACGTAGT----G--C-C-CGCCCGCCCGCTCATTTCGTC-GTTCGG
648 CATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCTCGCCCGCCCGCTCGTTTCATCGGTT-GG
* *
3226933 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACAGCAGCAGGAT
712 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT
* * * *
3226998 CGGTAGCACGTAGAGGGGGACCCAACCGATCCCCGGCTAGCGCATCCCGCCCCTCTGGTCGGCTG
777 CGGCAGCACGCAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
3227063 AGCACCCGTACACTCGTTTCATGGGTTGACTTAG
842 AGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
*
3227097 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAATTCATTCCCAGTCTAAGATTGGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCT----A-A--G-----------A-TC-------GGACCGGAC
* * * * * * *
3227162 CGAGGGTTGC-ACAGCACATGCTGGGCTCGAGCATGTGCTGCTACCGTATTTTTCTTCGTCGAGG
40 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * *
3227226 CACCAT---C---G---C--CGGAGAACCTGACCGACAGCATTGGGGTTCCAGCGATTGGGGGGG
105 CACCATCACCGGAGCATCGTCGGAGAACCTGACCGA-TGCATTGGGGTTCGA-CGA-TCGGGGGG
*
3227280 CCGGGGGGGTGTGCGCACATGATGTGCGATGTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
167 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
3227345 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACAGGTATGCTG
232 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
3227410 CCAGTAGCCATTATAGTGTCTGAAATGGGCACAATTTTTTCAAATGGTCACAAAATCTTGTACAC
297 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
3227475 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACGAAAT
362 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
3227540 TTGGGGCAAAAAATCCTTCTGAAAAAGTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAGTC
427 TTGGGGCAAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
*
3227605 GTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
492 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
3227670 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCT
557 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCT
* * * * * *
3227735 ACGACCCTATTGATCCACGGCTTGCGCATCTCGCCTCTCTAACCGGCGTAGTGCCCGCCCGCTCG
622 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCTCG
* * *
3227800 CCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCTA-TCTAAGATCGGA-
687 CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT-CCTAGTCTAAGATCAGAC
* * ** * * * *
3227863 TAGGACCGAGAGTTGCGGTGGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGGT
751 CA-GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCAACCGATCCCCGGCT
* * * * *
3227928 TGCGCATCCCACCGCTCTGGCCGGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAG
815 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
* * *
3227989 GCATACGGAGTTCTTTCCCAGTGTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* *
3228054 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * * * *
3228119 ACCTGACCGGTGCATTGGGATTTCGACGATCGGGGGGTC-AGGGGGTGTGCTCACATGATGTGCG
131 ACCTGACCGATGCATTGGG-GTTCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
*
3228183 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
3228248 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
3228313 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTGGCTGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * * *
3228378 CATGCCAACAAAAATGCAAGGATCATGTCTACGAAGTTTGGGGCCAAAAAGT-TTTCTAAAAAAA
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAAAATCCTTCTGAAAAAA
* *
3228442 TTTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATGGAAAACGAGTCGTCTC
454 TTTT-AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* **
3228507 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATCACA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
3228572 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCG
583 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
3228637 CATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTTCACCCACCCACCCGCTCGTTTCGT
648 CATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCG--C--T----CGCCCGCCCGCTCGTTTCAT
* * * * * *
3228702 CTGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAGGCTCAGACCAGACCGAGGGCTGTGGCA
705 CGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCA
* * * * *
3228767 GCAGTATCGGCATCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTAG
770 GCAGGATCGGCAGCACGCAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
*
3228832 CCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
835 CCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
* * * **
3228873 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTCCGGCAGCACATGTTGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* **
3228938 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * * * * *
3229003 ACCTGATCGATGGCAATGGGGTTCTGACGATCGGGGGGGCTGGGTGGGTGTGCACACATGATGTA
131 ACCTGACCGAT-GCATTGGGGTTC-GACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* ** *
3229068 TGATCAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
3229133 ACGCCCTTAAAGAGCATTTGAGATTTTACAGGATTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
3229198 GGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAATTTTTTT-
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
3229262 TGCATGCCAAAAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAAATCTTTCTGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCTGAAAAA
* * ** * *
3229327 ATTTTAGAAAATCCAGAACCATAAAAAGTTTCAAAAGTCGTGAAAAATAGAAAACGAGTGGTCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
3229392 GCCATGAAACTTCACGTGAAGGCGTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * * *
3229457 TTGGCACGTAAAAATAAGAAGATGTGCCTAAACCTACCTACCAACCTATCGATCCATGGCTTACG
583 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
3229522 CATCCCGTCTCTCTAGCCGACGTAATGCCCGCCCGCCCGTCCGCCCGCTTGTTTCATCGGTTGGC
648 CATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCTCGCCCGCCCGCTCGTTTCATCGGTTGGC
* * * ** *
3229587 TTAGGCATTCGGAGATCATTCCCAGTCTAAGATC-GAACTGGACTGAGGGTTGCGGCAGCAGGAT
713 TTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCAGGAT
* * *
3229651 TGGTAGCACGCAGAGGGGGACCCAACGGATCCC
777 CGGCAGCACGCAGAGGGGGACCCAACCGATCCC
3229684 ATATCCCTTC
Statistics
Matches: 2251, Mismatches: 260, Indels: 140
0.85 0.10 0.05
Matches are distributed among these distances:
865 24 0.01
866 17 0.01
867 53 0.02
869 1 0.00
870 2 0.00
872 1 0.00
873 3 0.00
874 1 0.00
875 260 0.12
876 225 0.10
877 111 0.05
878 19 0.01
880 3 0.00
881 29 0.01
882 2 0.00
883 15 0.01
884 742 0.33
885 224 0.10
886 62 0.03
887 203 0.09
888 2 0.00
889 1 0.00
890 1 0.00
891 7 0.00
892 231 0.10
893 12 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (875 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
ACCTGACCGATGCATTGGGGTTCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCTGAAAAAATT
TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCTCGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
GGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGC
AGCACGCAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
CCCGTACGCTCGTTTCGTGGGTTGACTTAG
Found at i:3230122 original size:460 final size:459
Alignment explanation
Indices: 3229234--3230133 Score: 1351
Period size: 460 Copynumber: 2.0 Consensus size: 459
3229224 AAATCTTTTA
*
3229234 CACTTCGAGTTTTTAGCTGAATTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGCCTACCAA
1 CACTTCGAGTTTTTAGCTGAATTTTTTTTGCATGCCAAAAAAAATACAAGGATAACGCCTACCAA
* * * *
3229299 GTTTGGGGCCAAAAATCTTTCTGAAAAAATTTTAGAAAATCCAGAACCATAAAAAGTTTCAAAAG
66 GTTTGGGGCCAAAAATCCTTATGAAAAAATTTTAGAAAATCCAGAACCACAAAAAGTTTCAAAAA
* * * *
3229364 TCGTGAAAAATAGAAAACGAGTGGTCTTGCCATGAAACTTCACGTGAAGGCGTAAGGGACCATTG
131 TCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACATCACGTGAAGGCGTAAGGGACCATTC
* * *
3229429 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATAAGAAGATGTGCCTAAACCTAC
196 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATAAGAAGATGTGCCGAAACCCAC
3229494 CTACCAACCTATCGATCCATGGCTTACGCATCCCGTCTCTCTAGCCGACGTAATGCCCGCCCGCC
261 CTACCAACCTATCGATCCATGGCTTACGCATCCCGTCTCTCTAGCCGACGTAATGCCCGCCCGCC
** **
3229559 CGTCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATTCGGAGATCATTCCCAGTCTAAGATCGAA
326 CACCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATTCGGAGATCATTCCCAGTCTAAGATCGAA
*** * *
3229624 CTGGACTGAGGGTTGCGGCAGCAGGATTGGTAGCACGCAGAGGGGGACCCAACGGATCCCATATC
391 CCAAACTGAGGGTTACGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCAACGGATCCCATATC
3229689 CCTT
456 CCTT
* *
3229693 CACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATAACGTCTACCA
1 CACTTCGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAAAAAAAATACAAGGATAACGCCTACCA
* *
3229758 AGTTTGGGGCCAAAACTCCTTATGAAAAAATTTTA-AAACATCTC-GAACCGCAAAAAGTTTCAA
65 AGTTTGGGGCCAAAAATCCTTATGAAAAAATTTTAGAAA-ATC-CAGAACCACAAAAAGTTTCAA
*
3229821 AAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCA
128 AAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACATCACGTGAAGGCGTAAGGGACCA
* *
3229886 TTCTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCGAAACC
193 TTCTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATAAGAAGATGTGCCGAAACC
* * * * * * *
3229951 CACCTACCACCCTATCGATCCATGGCTTGCGCATTCCGTCTCTCTGGCCGGCGTAGTGCCTGCCC
258 CACCTACCAACCTATCGATCCATGGCTTACGCATCCCGTCTCTCTAGCCGACGTAATGCCCGCCC
** *
3230016 GCCCACCCGCTTGCTCATTTCATCGGTTGGCTTAGGCATAT-GGAGTTCATTCCCAGTCTAAGAT
323 GCCCACCCGCCCGCTCATTTCATCGGTTGGCTTAGGCAT-TCGGAGATCATTCCCAGTCTAAGAT
* *
3230080 C-AGACCAAATTGA-GGTATATGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCC
387 CGA-ACCAAACTGAGGGT-TACGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCC
3230134 GATCGATCCC
Statistics
Matches: 395, Mismatches: 40, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
459 35 0.09
460 358 0.91
461 2 0.01
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (459 bp):
CACTTCGAGTTTTTAGCTGAATTTTTTTTGCATGCCAAAAAAAATACAAGGATAACGCCTACCAA
GTTTGGGGCCAAAAATCCTTATGAAAAAATTTTAGAAAATCCAGAACCACAAAAAGTTTCAAAAA
TCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACATCACGTGAAGGCGTAAGGGACCATTC
TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATAAGAAGATGTGCCGAAACCCAC
CTACCAACCTATCGATCCATGGCTTACGCATCCCGTCTCTCTAGCCGACGTAATGCCCGCCCGCC
CACCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATTCGGAGATCATTCCCAGTCTAAGATCGAA
CCAAACTGAGGGTTACGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCAACGGATCCCATATC
CCTT
Found at i:3232709 original size:26 final size:26
Alignment explanation
Indices: 3232673--3232725 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3232663 GTTGACTTAG
*
3232673 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3232699 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3232725 G
1 G
3232726 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3233536 original size:898 final size:897
Alignment explanation
Indices: 3231800--3236120 Score: 5913
Period size: 891 Copynumber: 4.9 Consensus size: 897
3231790 GGTGGCTTAG
* * * *
3231800 GCATACGGAGCTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT-CTGGCAGCACAAGCAGG
1 GCATACGGAGTTCATTCCCTGTCTAAGATCAGACCAGACCGAGGGTTGC-GGCAGCACATGCTGG
* * * * *
3231864 GCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAG
65 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* *
3231929 AACCTGACC-AGCGGCATTGGGGTTCCGACAATCGGGGGGGCTGGAGGGGTGTGCGCACATGATG
130 AACCTGACCGA-CGGCATTGGGGTTCCGACGATC-GGGGGGCCGG-GGGGTGTGCGCACATGATG
* *
3231993 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCAAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
3232058 ACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
3232123 ATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
3232188 TGTGTATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCAAAACTCCTTTCAAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* ** *
3232253 AAATTTTAAAAAATCCTGAACTACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
3232318 TTGCCATGAAGCTTCACGTGAAGGCTTAA-GGATCGTTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
3232382 CATTGACATGCAGATATATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
3232447 CGTATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGTTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-ACCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
3232512 AGGCATACGGAGTTCATTTCCAGTCTAAGATCGGATCGGACTGAGGGTTGTGGGAGCAAGATTGG
711 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATCGG
* * * *
3232577 TAGGACGCAGAGGGGGACTCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
776 CAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
3232642 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
841 ACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
3232699 GCATACGGAGTTCATTCCCTGTCTAAGATCAGACTGGACCAAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCTGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
3232764 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
*
3232829 ACCTAACCGACGGCATTGGGGTTCCGACGATCGGGGTGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGCCGGGGGGTGTGCGCACATGATGTGC
*
3232894 GATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
3232959 CCCGCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-CTTGAAAT
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAAT
*
3233023 GGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * * *
3233087 TGCATGCCAAAAAAAATAAAAGGATTATGTGTACCATGTTTGGGGCCAAAACTCCTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
3233152 ATTTTAAAAAATCCCGAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
3233217 GCCATGAAACTTCACGTAAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
3233282 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTTCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** *
3233347 CAACCCGTCTCTCTGGCCGACGTAGTGCCCACCGACCCGCCCGCTTATTTCATCGGTTGGCTTAG
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCG-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
3233412 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGGGGTAGCAGGATCGGCA
713 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATCGGCA
* * * * * * *
3233477 GCACGCCGAGGGGGACTCGGTCGATCCCCGACATGCGCATCCCGTCGCTCTGGCCGGCTGAACAC
778 GCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
3233542 CCGCACGCTCGTTTCAT-GG--G---T---C--A---A---C-TT---AG-----
843 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
3233571 GCTTACGGAGTTTATTCCCTGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCTGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** *
3233636 CTCGAGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGAAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * *
3233701 ACCTGATCTG-CGGCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGA-CCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * *
3233765 CGATGGGTGCGGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
3233830 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
3233895 GGGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
3233960 TGCATGCCAAAAAAAATACAA-G--CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
3234022 ATTTTAAACAATCCCGAATCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * **
3234087 GCCATGAAACTTCACGTGAAGCCTTAAGGTACCATTGTATGGATTTGTAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
3234152 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * * *
3234217 CATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCGTCCGCCCGTTCGTTTCGTCGGTTGGCTTAG
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCC-ACCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * ** * *
3234282 GCATACGGAGTTCATTCCCAGTCTAAGACCGGACTGGAATGAGGGTTGTGGTTGCAGGATCGGTA
713 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATCGGCA
* * *
3234347 GCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCAT-CCGCACCTTTGG-CGGGTAGAGCA
778 GCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT-GAGCA
* * * *
3234410 CCCGCACGTTCGTGTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
842 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
3234466 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACC-A-AGTTGAGACAGCA-ATGCTGGG
1 GCATACGGAGTTCATTCCCTGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
3234528 CTCGAGCATGTGTTGGTGCCGCCTTTCTCTTC-TCCGGGGCACCATCGTCGGAGCATCGCCGGAG
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGT-CGGGGCACCATCGTCGGAGCATCACCGGAG
** * *
3234592 AACCTGACCGACGGCATTGAGTTTTTCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTG-GGGTTCCGACGA-TCGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
3234657 GCAATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
3234722 CACCCCCTTAAAGAGCCTTTGAGATTTTACATGTTTGCTGCCAGTAGCCACTAAAGTGTCTGGAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
3234787 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
3234852 GTGGATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTGGGG-CAAAACTCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* ** * *
3234916 AATTTTAAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGGGAT-GC
453 AATTTT-AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG-TCGT
*
3234980 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * **
3235045 GCATTGCCACGTGGAAATCA-GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
581 GCATTGGCATGCAGAAAT-ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
3235109 TGCGCATCCCGTCTCTCTAGCCGGCATAGTGCCCGCCCACCCGCTCGTCCGCTCGTTTCGTCGGT
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCA-CCGCCCGCCCGCTCGTTTCGTCGGT
* * * * * * *
3235174 TGGCTTAGGCATATGGAGTTCATTCCCAGTGTAAGATCAGACCAGACTGA-GGTATATGGCAGCA
705 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT-TGTGGTAGCA
** * * * * * * *
3235238 GGATCGTTAGCATGCAGAGGGGGACCTGATAGATCCCCGGCTTGCGCATCCCGCCCTTTTTGCCG
769 GGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * *
3235303 GCTGAGCACCCTC-CTGCTCATTTCATGGGTTGACTTAGCCATACGAAGTTCATTCCCAGTGTAA
834 GCTGAGCACCCGCAC-GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * *
3235367 GCATACAAAGTTCATTCCCTGTCTAAGATCGGACTAGATCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCTGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** *
3235432 CTCGAGCATGTGTTGGTGTCGCATTTTTCTTCACCGAGG---CA----C----CATCACCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
3235486 ACCTGACCGACGGCATTGGGGTTCC-AGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
3235550 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTCAAGAAGTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* ** * *
3235615 CCCCCTTAAAGAGCATTTGAGATTTTACACGTTTGCTGTTAGTAGCCATTAAAGTGTATGAAATA
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
3235680 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * ** * *
3235745 GCATGCCAAGAAAAATACAAGGAGT-ATGTCTACCAAGTTTGGCACCAAAAATCCTTCTGAAAAA
390 GCATGCCAACAAAAATACAAGGA-TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
3235809 ATTTTAAAAAATCCCAAACCACAAAAATTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
3235874 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
3235939 TTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATACACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*** *
3236004 CATCCCGTCTCTCTGGTTAGCGTAGTG--C-TCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * *
3236066 CATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGCTGTGGCAGCA
714 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCA
3236121 CATGCTGGAC
Statistics
Matches: 3036, Mismatches: 319, Indels: 150
0.87 0.09 0.04
Matches are distributed among these distances:
868 4 0.00
869 27 0.01
870 363 0.12
871 7 0.00
872 303 0.10
873 77 0.03
875 1 0.00
877 2 0.00
878 1 0.00
880 3 0.00
881 1 0.00
883 76 0.03
884 3 0.00
885 1 0.00
886 1 0.00
887 4 0.00
889 1 0.00
890 3 0.00
891 440 0.14
892 110 0.04
893 270 0.09
894 11 0.00
895 60 0.02
896 211 0.07
897 203 0.07
898 431 0.14
899 152 0.05
900 121 0.04
901 93 0.03
902 5 0.00
903 10 0.00
904 41 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCTGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCACCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATCGGCAGCA
CGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCG
CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:3234476 original size:26 final size:26
Alignment explanation
Indices: 3234440--3234492 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3234430 GTTGACTTAG
3234440 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
3234466 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3234492 G
1 G
3234493 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:3235393 original size:26 final size:26
Alignment explanation
Indices: 3235342--3235393 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
3235332 TTGACTTAGC
* *
3235342 CATACGAAGTTCATTCCCAGTGTAAG
1 CATACAAAGTTCATTCCCAGTCTAAG
*
3235368 CATACAAAGTTCATTCCCTGTCTAAG
1 CATACAAAGTTCATTCCCAGTCTAAG
3235394 ATCGGACTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
CATACAAAGTTCATTCCCAGTCTAAG
Found at i:3236380 original size:709 final size:698
Alignment explanation
Indices: 3235367--3236711 Score: 2054
Period size: 709 Copynumber: 1.9 Consensus size: 698
3235357 CCCAGTGTAA
* * * * *
3235367 GCATACAAAGTTCATTCCCTGTCTAAGATCGGACTAGATCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACAAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGCTGCGGCAGCACATGCTGGA
* *
3235432 CTCGAGCATGTGTTGGTGTCGCATTTTTCTTCACCGAGGCACCATCACCGGAGAACCTGACCGAC
66 CTCGAGCATGTGTTGGAGCCGCATTTTTCTTCACCGAGGCACCATCACCGGAGAACCTGACCGAC
*
3235497 GGCATTGGGGTTCCAGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
131 GGCATTGGGGTTCCAGCGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGG
* * *
3235562 TACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTCAAGAAGTCACACCCCCTTAAAGA
196 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTAACACCCCCTTAAAGA
**
3235627 GCATTTGAGATTTTACACGTTTGCTGTTAGTAGCCATTAAAGTGTATGAAATAGGGACACTTTTT
261 GCATTTGAGATTTTACACGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATAGGGACACTTTTT
* *
3235692 TCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAA
326 TCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAA
* *
3235757 AAATACAAGGAGT-ATGTCTACCAAGTTTG-GCACCAAAAATCCTTCTGAAAAAATTTTAAAAAA
391 AAATACAAGGA-TCACGTCTACCAAGTTTGTG-ACCAAAAATCCTTCCGAAAAAATTTTAAAAAA
3235820 TCCCAAACCACAAAAA-TTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
454 TCCCAAACCACAAAAAGTTTT-AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
3235884 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTGGAATGCA
518 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATGCA
*
3235949 GAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATACACGGCTTGCGCATCCCGTCT
583 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCATCCCGTCT
3236014 CTCTGGTTAGCGTAGTGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
648 CTCTGGTTAGCGTAGTGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * *
3236065 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGCTGTGGCAGCACATGCTGGA
1 GCATACAAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGCTGCGGCAGCACATGCTGGA
*** *
3236130 CTC-AGGCATGTGTTGGAGCCGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGCCGTAG
66 CTCGA-GCATGTGTTGGAGCCGCATTTTTCTTCACCGAGGCACCA---TC--A-C--CG--G-AG
*
3236194 AACCTGACCGACGGCATTGGGGTTCC-GACGATCGGGGGGGCCGGGGGGTGTGCACACATTATGT
119 AACCTGACCGACGGCATTGGGGTTCCAG-CGATC-GGGGGGCCGGGGGGTGTGCACACATGATGT
* * * **
3236258 GCGGTGGGTGGTGGTGCTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTAA
182 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTAA
* *
3236322 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
247 CACCCCCTTAAAGAGCATTTGAGATTTTACACGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAA
* * * *
3236387 TGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTT
312 TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAATTTTTTT
* *
3236452 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGTGGCCAAAACTCCTTCCGAAAA
377 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGTGACCAAAAATCCTTCCGAAAA
* * ** *
3236517 AATTTTAAAAAATCTCGAACCTTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTTGTCT
442 AATTTTAAAAAATCCCAAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
3236582 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
507 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** *
3236647 ATTGGCTTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
572 ATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGC
3236712 ACTGCCGCCT
Statistics
Matches: 581, Mismatches: 49, Indels: 23
0.89 0.08 0.04
Matches are distributed among these distances:
697 1 0.00
698 93 0.16
701 2 0.00
703 1 0.00
704 1 0.00
706 2 0.00
708 3 0.01
709 415 0.71
710 63 0.11
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (698 bp):
GCATACAAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGCTGCGGCAGCACATGCTGGA
CTCGAGCATGTGTTGGAGCCGCATTTTTCTTCACCGAGGCACCATCACCGGAGAACCTGACCGAC
GGCATTGGGGTTCCAGCGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTAACACCCCCTTAAAGA
GCATTTGAGATTTTACACGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATAGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGTGACCAAAAATCCTTCCGAAAAAATTTTAAAAAATC
CCAAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCATCCCGTCTCTC
TGGTTAGCGTAGTGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:3237418 original size:26 final size:26
Alignment explanation
Indices: 3237382--3237434 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3237372 GTTGACTTAG
*
3237382 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3237408 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3237434 G
1 G
3237435 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3239187 original size:26 final size:26
Alignment explanation
Indices: 3239157--3239209 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3239147 GTTGACTTAG
3239157 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3239183 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3239209 G
1 G
3239210 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3240073 original size:26 final size:26
Alignment explanation
Indices: 3240037--3240089 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3240027 GTTGACTTAG
*
3240037 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3240063 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3240089 G
1 G
3240090 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3241466 original size:903 final size:892
Alignment explanation
Indices: 3237002--3244486 Score: 9566
Period size: 903 Copynumber: 8.4 Consensus size: 892
3236992 TGCTGGGCGA
* ** * *
3237002 AAAAATAGAAAATGAGTCGTCTTGAAATGAAACTTTACGTGAAGGCTTAAGTGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
3237067 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
** * * *
3237132 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTAGCGTAGTGCTCGCCCGCCCTCCC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCG-CCGCCC
* * * **
3237197 TCCCGTTCGTTT--TACGATTGGCTTAGGCATACGGAGTTCATTTTCAGTCTAAGATCGGACC-A
195 GCCCGCTCGTTTCGT-CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA
* * * * **
3237259 GACTGAGGGTTGCGGCAGTAGTATCGGTAGCACGCACAGGGGGACCCAACCGATCCCCGGCTTGC
259 -ACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGC
* * ** * *
3237324 GCATCCCGCCTCTGTGGCCGATTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATG
323 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
* *
3237389 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGT
388 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
* * * * *
3237454 TGCGACAGCACAAGCTGGGCTTGAGCATGTGTTGGTGCCGCATTTTTCTTGGTCGAGG---CA-C
453 TGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * *
3237515 -CATCGCCGGAGAACCTGACCTG-CGGCAATGAGGTTCCGGCGATCGAGGGGGCCAGGGGGGTGT
518 GCATCGCCGGAGAACCTGACC-GACGGCATTGGGGTTCCGACGATCG-GGGGGCC-GGGGGGTGT
3237578 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
580 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * *
3237643 CCTCAAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTACCCATT
645 CCTCGAGAACTCACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
3237708 AAAGTGTCCGAAATGGGGACACTTTTTTCAGATGGTCACAAAATCTTGTACACTTCAAGTTTTTA
709 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * *
3237773 GCTGAATTTTTTTGTGCATGGCAAAAAAAAAATACAAGGACCACGTCTACCAAGTTTGGGGCCAA
774 GCTGAATTTTTTTGTGCAT-GC-CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* ** * **
3237838 AACTACTTCCAAAAAAATTTTAAAAAATCCCGAACCATAAAACGTTTCAAAAATTATG
837 AACT-CTT-CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTG
* *
3237896 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
3237961 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACGCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * *
3238026 ACCCTGTCGATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGTCC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCG-CCGCCC
* * * * *
3238091 ACCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTACTAGTCTAAGATCGGACCGGA
195 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAA
* * *
3238156 CTGAGGGTT---GCAGCAGGATCGGCAGCACGTATAGGGGGACCCCGG-TGATCCCCGGCTTGCG
260 CTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGA-CCCGGCCGATCCCCGGCTTGCG
* * * *
3238217 CATCCTGCCCCTCT-GCCTTGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACCTAGGCATACG
324 CATCCCGCCCCTCTGGCC-GGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
* * *
3238281 GAGTTCATTCCCAGTTTAAGCATATGGAGTTCATTCCCAGTCTCAGATC-GAACCAGACCGAGGG
388 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGG
* * * * * *
3238345 TTACGACAGCACATGCTGGGCTCGCGCATTTGTTGGTGTCGCATTTTTCTTTGCCGGGGCATCAT
452 TTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCA-C--
* * * ** * * *
3238410 CACCGGAGCATCGTCGAAGAAGTTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGG
514 CATC---GCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGG
* *
3238475 GG-GTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCA
575 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
3238539 TCAAACCTCTAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA-
640 TCAAACCTCGAGAACTCACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
3238603 CCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTG
704 CC-ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
*
3238668 CTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
768 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* *
3238733 -CAAAACTCTCTCTGAAAAAATTTTAAAAAATCCCGAACC-CTAAAAAGTTTTAAAAATTGTG
833 CCAAAACTCT-TC-GAAAAAATTTTAAAAAATCCCGAACCGC-AAAAAGTTTCAAAAATCGTG
3238794 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
3238859 ATTTACAAGCCATAAAAATAGCATTGGCATGCAAAAATATGAAGATGTGCCCAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
3238924 ACCCTATCGATCCACGGCTTACGCATCCCGTCTCTTTGGCCGGCATAGTGCCCA--C-CCGCCCG
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCGCCCG
* * * * *
3238986 TCCGCTCGTTTCGTCGGTTGGCCTAGGCATACGGAGTTCATTCCCAGTATAAGATCGGACTGGAC
196 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAAC
* * *
3239051 TGAGGGTTGC-G-A-C---A---G--G-ACGCAGAGGGGGATCTGGCCGATCCCCGGCTTGTGCA
261 TGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCA
* * * *
3239104 TCTCGCCCCTCTGGCCAG-T-TGC-GCCGACACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
326 TCCCGCCCCTCTGGCCGGCTGAGCACCCG-CACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
* * *
3239166 GTTCATTCCCAGTCTAAGCATACGGATTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTG
390 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
** * * * *
3239231 CGGTAGCACATGCTGGGCTCGGGCATGTGTTGATGCCACTTTTTTCTTCGTCGAGGCACCATCG-
455 CGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC
*
3239295 -TCG--GG-GAACCTGACCGACGGCATTGGGGTTCCGACGATCCGGGGGGCCGGGGGGTGTACGC
520 ATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT-CGGGGGGCCGGGGGGTGTGCGC
* *
3239356 ACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTC
584 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * *
3239421 AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGATGCCCGTAGCCATTAAAG
649 GAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
3239486 TGTCTGAATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGGTG
713 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* **
3239551 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTAAGAAGTTTGGGGCCAAAACTCC
778 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-C
* * *
3239616 TTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATTGTG
842 TTC-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTG
* ***
3239668 AAAAATACAAAACGAGTCGTCTCATCATGAAACTTCACGTGAAGGC-TAAGGGGACCATTGTATG
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGGACCATTGTATG
* * ** * * *
3239732 AATTTAGAAGCCATAAAAATGGCATTGGAACACAGAAATATGAAGATTTACCTAAACCAACCTAC
65 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
3239797 CACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCC-G-GT-GT----A---G-TGCCC
130 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCGCCC
* * * * * *
3239851 GCCCGTTTGTTTCGTCGGTTGGCTTAGGCATACGGATTTCATTCCCATTCTAAGATCGGATCAAA
195 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAA
* * * ** * * *
3239916 CTGAGGGTTGCGGTAGCAGGATTGGTAGCACAAAGAGGGGGACCCAGCCGATCCTCGGCTTGCAC
260 CTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGC
* * * * * *
3239981 ATCCCACCCCTCTGGCCGGTTGAGCGCCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
325 ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
*
3240046 GTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
390 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
* * * * *** *
3240111 CGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACCTTTTTCTTTACCGGGGTGCCATCAT
455 CGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTC-GGG-G-CACCA-
* * *
3240176 TGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCC-AGCGATCGGGGGGCCGGGGGGT
516 T--CGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGCCGGGGGGT
* * *
3240240 GTGCTCACATGATGTGCAATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
578 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
3240305 AAGCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
643 AACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* ** *
3240370 TTAAAGTGTCTAAAATAAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTT
707 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
3240435 TAGCTGAATTTTTTTCTGCATGCCAAAAAAAATACAATGATCATGTCTACCAAGTTTGGGGCCAA
772 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * * *
3240500 AAATCCTTTTGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTCCAAAAATCATG
837 AACT-C-TTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTG
* *
3240558 AAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
3240623 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
3240688 ACCCTATCGATCGACGGCTTACGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCACCCGTCCGCCC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCG-CCGCCC
* * *
3240753 GCCCGCTCGTTTCGTCGGTTGGTTTAGGCATACGGAGTTCATCCCCAGTCTAAGATCGGACCAAA
195 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAA
* * * * *
3240818 CTGAGGGTTGCGACAGCAGGATCGGCAGCAGGCAGAGGGGGACCCAGCCGAACCCCGACTTGCGC
260 CTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGC
* * * * * *
3240883 ATCCCACCCCTCTGGCCGGCTGAGCGCCCACACGTTCATTTCATGGGTTGACTTAGGCATATGGA
325 ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
* * * * * *
3240948 GTTCATTCCCAGTCTAAGCATACAGAGTCCATTCCTAGTCTAAGATCAGACTAGATCTAGGGTTG
390 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
** * *
3241013 CGGTAACACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGC
455 CGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---
* * *
3241078 CAGAGCATCGCCGGAGAACTTGACCGGCGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGCC
517 C---GCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGG-G
*
3241143 T-TGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATAT-GCCCCCTATCCCTCAT
577 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT-TGGCCCCCTATCCCTCAT
* * * * *
3241206 CAAAACTCGAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGTTGTCGGTAGC
641 CAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
3241271 CATTAAAGTGTTTGAAATGGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
705 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* *
3241336 TTTAGCTGAATTTTTTTGTGCATGCCAACCAAAATACAAGGATCACGTCTACCAAGTTTGGGGCT
770 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
*
3241401 AAAACTTCATTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG
835 AAAAC-TC-TTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTG
*
3241461 AAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
3241526 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAAATGAAGATGTACCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
3241591 ACCATATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGACGTAGTGCCCACCCGCCCGCCC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCG-CCGCCC
* * * *
3241656 GTCCGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACC-AG
195 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-
* * * *
3241720 ACTGAGGGTTGTGGGAGCAGGATCGCCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCG
259 ACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCG
* * * *
3241785 CATCCCGCCCCTCTGGCTGGCTGAGCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATGCGA
324 CATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* * ** *
3241850 AGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACGGAGGGTT
389 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * * * *
3241915 GCGGCATCACATACTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--
454 GCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * ** * * *
3241978 --T-GTCGAAGAACCTGACTAACGGCATTGGGGTTCTGGCGATC-----G--GGGGGGTGTGCGG
519 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGC
* * *
3242033 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATAAAACCTT
584 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
3242098 GAGAACTCACAGCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCCATTAAAG
649 GAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * * * *
3242163 TGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATTTTGTGCACTACGAGTTTTTAGCTA
713 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * *
3242228 AATTTTTTTGTGCATCCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTAT
778 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-C
*
3242293 TTCCGAAAAAATTTTAAAAAATCCC-AAGCCGCAAAAAGTTAT-GAAAATCGTG
842 TT-CGAAAAAATTTTAAAAAATCCCGAA-CCGCAAAAAGTT-TCAAAAATCGTG
*
3242345 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG-AGGCTTAAGGGAGCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*** *
3242409 ATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACTCCCA
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA--CCTA
* ** ** *
3242474 CGACCCTATCGATCCACAACTTGAACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCC
129 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCGCC
** *
3242539 CGCTTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCATTCTAAGATCGGACCGA
194 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA
* * * * * * * *
3242604 ACCGAGGGTTGCGACAGCAGGATCGACAACACGTAGAGGGGGTCCCGACCGATCCCTGGCTTGCG
259 ACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCG
* *
3242669 CATCCCGCCCCTCTGGCCGGCTGAGCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGA
324 CATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
3242734 AGTTCATTCCCAGTCTAAG-AT-C-G-G---------A--C------CAG--C---CCGAGGGTT
389 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * *
3242773 GCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCGGCATTTTTCTTCGTCGGGGCACCAT--
454 GCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * * ** * *
3242836 --T-GTCGAAGAACCTGACTGACGGCATTACGATTCCGACGAT--------CGGGGGGTGTGCGG
519 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGC
* * *
3242890 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACGTT
584 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
3242955 GAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
649 GAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * * * *
3243020 GTCTGAAATGGGGACACTTTTTGCAAATGGTAAAAAAATATTGTACACTTCAAGTTTTTAGCTGA
714 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
3243085 ATTTTTTTTTTTGCATGCCAACAAAAATACAAGGATCACATTTACCAAGTTTGGGGCCAAAA-TG
779 A--TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-
* * *
3243149 CCTTTCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAGGTTTCAAAAATCGTG
841 -C-TTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTG
* *
3243203 AAAAATAGAAAACGAGTCATCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
3243268 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
3243333 ACCCTATCGATCCACGGCTGGCGCAT-CCATCTCT-TCGG-CGGCGTAGTGCCCGCCCGCTTGCC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GGCCGGCGTAGTGCCCACCCGC-CGCC
* * * * *
3243395 CG-CCGCTTGTTTCATCGGTTGGCTTAGGTATACGGAGTGCATTCCCAGTCTAAGATCAGACCGA
194 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA
* * * * * * * * * *
3243459 ACCGAGCGTTGTGGTAGCAGGA-CTGGTAGCACGCAGAGGGGAACTCGGTCGATCCTCGGCTTAC
259 ACTGAGGGTTGCGGCAGCAGGATC-GGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGC
* * * ** * *
3243523 GCATCCCGCTCTTCTAGTTGACTGAGCACCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACG
323 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
* * *
3243588 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGAT-TGAACC-GAATCGAGG
388 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAG-ACCGAGG
* * *
3243651 GTTGCGGCAGCACATGCTGGGCTCAGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCA
451 GTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * * * * * *
3243716 TCGTCGGAGCATCGCAGGAGAATCTAACCGACGGCATTGGGATTCCGACTATCAGGGGGCCGAGG
516 ---TC---GCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGG
* *
3243781 GGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCTTATCCCTCA
575 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
3243846 TCAAACCTAGGGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGC
640 TCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
3243911 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
705 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * ** * *
3243976 TTTAGTTGAATTATTTTGTGCATGCCAAAAAAAATATGAGGATCACGTCTACCAGGTTTTGGGCC
770 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
*
3244041 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTG
835 AAAACT-CTT-CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTG
*
3244101 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
3244166 ATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGAAGTGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
3244231 ACCCTATCGATCCACGGCTTGCGCATCCCTTCTCTCTGGCCGGCGTAGTGCCCA--C-CTGCCCG
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCGCCCG
* * * * * *
3244293 TCTGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGAA-
196 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAAC
* * * * *
3244357 TCGAGGGTTGCGGCAACAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGTGC
261 T-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGC
* * * * * *
3244422 ATCCCGCCCCTCTGGCCTGCTGAGTACCCGCACGCTCGTTTCGTGAGTTCACTTAAGCATACGGA
325 ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
3244487 TAAAAAAATT
Statistics
Matches: 5786, Mismatches: 642, Indels: 323
0.86 0.10 0.05
Matches are distributed among these distances:
854 1 0.00
855 196 0.03
856 125 0.02
857 115 0.02
858 233 0.04
859 82 0.01
861 1 0.00
863 1 0.00
866 69 0.01
867 2 0.00
868 2 0.00
869 2 0.00
870 1 0.00
871 3 0.00
872 44 0.01
873 239 0.04
874 209 0.04
875 7 0.00
877 2 0.00
878 45 0.01
879 1 0.00
880 142 0.02
881 72 0.01
882 6 0.00
883 227 0.04
884 528 0.09
885 94 0.02
886 6 0.00
888 3 0.00
890 453 0.08
891 42 0.01
892 264 0.05
893 6 0.00
894 260 0.04
895 54 0.01
896 8 0.00
897 165 0.03
898 471 0.08
899 51 0.01
900 215 0.04
901 207 0.04
902 325 0.06
903 803 0.14
904 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCGCCCG
CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAAC
TGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCA
TCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
GACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCA
TCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCAC
ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
GAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTCG
AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTG
Found at i:3243611 original size:26 final size:26
Alignment explanation
Indices: 3243581--3243633 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3243571 GTTGACTTAG
3243581 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3243607 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3243633 G
1 G
3243634 ATTGAACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3255289 original size:26 final size:26
Alignment explanation
Indices: 3255250--3255302 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3255240 GTTGACTTCG
3255250 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
3255276 GCATATGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3255302 G
1 G
3255303 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3256178 original size:26 final size:26
Alignment explanation
Indices: 3256148--3256197 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
3256138 GACTTGGGCA
3256148 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGGAGTTCATTCCCAGTCTAAGCT
3256174 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
3256198 ATCGGACATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:3257031 original size:26 final size:26
Alignment explanation
Indices: 3256994--3257046 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3256984 GTTGACTTAG
3256994 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
3257020 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3257046 G
1 G
3257047 ATCGAACATG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:3257927 original size:26 final size:26
Alignment explanation
Indices: 3257897--3257949 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3257887 GTTGACTTAG
3257897 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3257923 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3257949 G
1 G
3257950 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3259712 original size:26 final size:26
Alignment explanation
Indices: 3259672--3259722 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
3259662 TGAATTAGGT
* * *
3259672 ATACGGAGTTCATTCTCAGTCTAAGC
1 ATACGAAGTTAATTCCCAGTCTAAGC
3259698 ATACGAAGTTAATTCCCAGTCTAAG
1 ATACGAAGTTAATTCCCAGTCTAAG
3259723 ATCGGACCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTAATTCCCAGTCTAAGC
Found at i:3260599 original size:26 final size:26
Alignment explanation
Indices: 3260570--3260621 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3260560 GTTGGCTTAG
3260570 GCATACGAAGTTCATT-CCTAGTCTAA
1 GCATACGAAGTTCATTACC-AGTCTAA
*
3260596 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGAAGTTCATTACCAGTCTAA
3260622 CATCGGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTACCAGTCTAA
Found at i:3261499 original size:26 final size:26
Alignment explanation
Indices: 3261470--3261520 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3261460 TGACTTAGGG
*
3261470 ATACGGTGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
3261496 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
3261521 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:3261877 original size:897 final size:898
Alignment explanation
Indices: 3256898--3266171 Score: 12017
Period size: 898 Copynumber: 10.4 Consensus size: 898
3256888 AGGCTTACGA
* * * * *
3256898 CAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTAGCTGGCTGAGC
1 CAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * * *
3256963 ACCCACATGCTCATTCCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGG
66 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * *
3257028 AGTTCATTCCCAGTCTAAGATC-GAACAT-GATCGAGGGTTGCAGCAGCACATGTTGGGCTCGAG
131 AGTTCATTCCCAGTCTAAGATCAG-AC-TGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * * * * * *
3257091 CATGTGTTCGTGTCACATTTTTCTTCGTCGAGGCACCATCATCGGAGCAACGCCGAAGAACCTGA
194 CATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * ** * ** * *
3257156 CCGGCAGCATTAGGGTTTTGGCGATCGGGGGGGTGGGGGGTGTGCGCAAATGATGTATGATGGGT
259 CCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGT
*
3257221 GCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-ATGAACTCACACCCCCT
324 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCACACCCCCT
*
3257285 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACA
388 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
3257350 TTTCTTTTGAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATG
453 CTT-TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * *
3257415 CCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAGTCTTTCCGAAAAAATTTTA
517 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
* * *
3257480 AAAAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATG
582 AAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * * * *
3257545 AAACTTTATGAGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCA
647 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** ** * *
3257610 TGCAGAAATAAAAAGATGTGCCTAAACCCACCTACCATGCTATCGATCTACGGCTTGCGGATCCC
712 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * * * *
3257675 ATCTTTCTGGCCAGCGTAGTGCCCGCCCATCCGCCTGCCCGCTCATTTCGTCAGTTGGCTTAGAC
777 GTCTCTCTGGCCGGCGTAGTGCCCG-CC-T--GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGC
* * ** * * * * *
3257740 ATGCGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAA-GGTTGCAGTAGCAGTATCGA
838 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-CAAGGGTTGCGGCAGCAGGATCGG
** * * * * * *
3257801 CAGCACGCAGAAAGGGACTCAACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGA
1 CAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
3257866 ACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGG
66 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* ** *
3257931 AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGATAGCACATGTTGGGCTCGGGCA
131 AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * *
3257996 TGTGTTGGTGCTGCATTTTTCTTCGCTGGAGCATCATCGT-----CA------GAGAACCTGACC
196 TGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
* * * * *
3258050 GGCAGCATTAGGGTTCCGATGATCGGGGGGGCCTGGGGGGTGTGTGCACATGCTGTGTGATGGGT
261 GGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGTGATGGGT
*
3258115 GCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTT
324 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
3258179 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACAC
389 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
3258244 TTTTTTCAAATGATCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTTTTTGTGCATGCC
454 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * * *
3258309 AACAAAAATACAAGGATCACATCTTCCAAGATTGGGACCAAAAATCCTTCCGAAAAAATTTTAAA
519 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
* * * *
3258374 AAATC-CTGAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAATGAGTCATCTTACCAT-A
584 AAATCTC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
3258437 ATACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
648 A-ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*
3258502 TGCAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
712 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * ** ** * ** *
3258567 GTGTCTGTGATCGATGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGCTCATTTTGTTGGTTGGCTT
777 GTCTCTCTGGCCGGCGTAGT----GCCCGCCTGCCCGCCCGCTCG----TTTCATCGGTTGGCTT
* * * * * * * * *
3258632 AGGCATATGGAGTTCAATCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCAGTAGCAAGATTGA
834 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGG
* * * * *
3258697 TAGCATGCAGAGGGGGACCCGACCGATCCTCG-GTTACGCATCCCGCCCCTCTGGCCGGCTGAGC
1 CAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
*
3258761 ACCCGCACGCTCGTTTGGTGGGTTGAC-T-----T----AG----------G-C---G--TACGG
66 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
*
3258800 AGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
131 AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * ** * * * *
3258865 TGTGTTTGTGCCGTA-TTTTCTTCGTCGGGGGCACCATCACCAGAGCATCACCGAAGAACCTGAT
196 TGTGTTGGTGCCGCATTTTTCTTCG-CCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * * * *
3258929 CGACGGCATTGGGGTTCTGACGATCAGGGGGGTCAGGGAGGTGTGCGTACATGATGTGTGATGGG
260 CGGCGGCATTGGGGTTCCGACGATC-GGGGGG-CCGGGGGGTGTGCGCACATGATGTGTGATGGG
* * *
3258994 TGCTGGTACTTGGCCCTTGTATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCGCCT
323 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
3259059 TAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
388 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
3259124 CTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTTGTGCATG
453 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATG
* * * *
3259189 CCAACAAAAATACAAGGATCACGTTTACCAAATTT-GTGCCAAAAATCCTTCCAAAAAAATTTTA
517 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
* *
3259253 AAAAATC-CTGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCTTCTTGCCAT
582 AAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
3259317 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCGTTGAC
646 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
3259382 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACAGCTTGCGCTTCC
711 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * *
3259447 CGTCTCTCTGGCCGGCGTAGTTCCAGCCTACCCTTCCGCACACTCGTTTCATCAGTTGGCTTAGG
776 CGTCTCTCTGGCCGGCGTAGTGCCCGCCT--GC--CCGCCCGCTCGTTTCATCGGTTGGCTTAGG
* * * * * * * * *
3259512 CATATGGAGTTGATTCCCAATCTAAGATCAAACCGGGCTGAA-GGTTGCGGCAGTAGGATCAG
837 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-CAAGGGTTGCGGCAGCAGGATCGG
* * ** * * *
3259574 TAGCACGTAGAGGGGGACCCGATTGATCCTC-AGCTTGCGCATCCCGCCCCTCTGGCTGGTTGAG
1 CAGCACGCAGAGGGGGACCCGACCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
3259638 CACCTGCACGCTCGTTTCGTGGGTTGAATTAGGTATACGGAGTTCATTCTCAGTCTAAGCATACG
65 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * ** * **
3259703 AAGTTAATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTTCCACAGCACATGCTGGGCTCGGGC
130 GAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
** *
3259768 ATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGAC
195 ATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * ***
3259833 CGGCGACATTGGGGTTCCGACGATCGGGGGGCCGGGGTGTGTGCGCACATGATGTGTGATATTTG
260 CGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTG
* *
3259898 CTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
325 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
3259963 AAGAGCATTTGAGATTTTACAGG-TTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
390 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
3260027 TTTTTCAAATGGTCACAAAATCTTGTACACTTCCATTTTTTAGCTGAATTTTTTTGTGCATGCCA
455 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
*
3260092 ACAAAAATACAAGGATCACGTCTACCAAGTTAGGGGCCAAAACTCCTTCCAAAAAAA-TTTAAAA
520 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
3260156 AATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
585 AATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* **
3260221 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACAC
650 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * *
3260286 AGAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCTACGGCTTGCGCATCCCGTT
715 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * * *
3260351 TCTCTGGTCGACGTAGTGCCTGCCCGCCCGCCCGCACGCTCATTTCATCGGTCGACTTAGGCATA
780 TCTCTGGCCGGCGTA--G--TGCCCGCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATA
* * * * *** * *
3260416 TGGAGTTCATTCCTAATCTAAGATCAGACCGGATGGAGGGTTGTGGCAGCAGGATTGG
841 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGG
* *** * * * *
3260474 TAGCACGCAGAGGGGGACCCGGGTGATCCCCGGCTTGCGCATCCCGCCCCTCTTGCCGACTGAGT
1 CAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * *
3260539 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACGG
66 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * * *
3260604 AGTTCATTACCAGTCTAACATCGGACCGGATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
131 AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * * *
3260669 TGTGTTGGTGCCTCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGATC
196 TGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
** * * * *
3260734 GGCGGCATTACGGTTTCAACGATC-GGGGGCCGGGGGGTGTGTGCGCACATGATATGCGATGGGT
261 GGCGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGG-GTGTGCGCACATGATGTGTGATGGGT
* ** * *
3260798 GCTGGTACTTGGCCCTTATATTGGCCCCATATTGCTCATCAGACCTAGAGAACTCACACCCCCTT
324 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
3260863 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCAAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
389 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
3260928 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
454 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
3260993 AACAAAAATACAAGCATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTCTAAA
519 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT-TTAA
* * *
3261058 AAAAT-TTGAAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
583 AAAATCTCG-AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
3261122 AAACTTCACGTGAAGGCTTAA-GGACCATTGTACGAATTTACAAGCCAT-AAAATGGCATTGGCA
647 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
3261185 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
712 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
3261250 GTCTCTCTGGCCGGCGTACTGCCCGCCTGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGACATAC
777 GTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
* * ** ** * *
3261315 AGTGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCGTTAGTAAGATCGG
842 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGG
* * * * * * * * *
3261372 CAGCACACAGAGGAGTACTCGGCCGATCCTCGACTTGCGTATCCTGCCCCTTTGGCCGGCTGAGC
1 CAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* ** * * * *
3261437 ACACAAACGCTTGTTTCGTTGGTTGACTTAGGGATACGGTGTTCATTCCCAGTCTAAGCATACGG
66 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * *
3261502 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCCGCAGCACATGCTGGGCTTGGGCT
131 AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * *
3261567 TGTGTTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACC
196 TGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
* ** ** *
3261632 GACGGTTTTGGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
261 GGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGC
* * *
3261697 TGATACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTCA
326 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
3261762 AGAGCATTTGAGATTTTATAGGTTTACTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
391 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
3261827 TTTTAAAATGGTCACAAAATCTTGTGCACTTCCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
456 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
3261892 AAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCATTCCGAAAAAATTTTAAAAA
521 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
* * *
3261957 ATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
586 ATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
3262022 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCAATAAAAATGGCATTGGCATGCA
651 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
3262087 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
716 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
** * * *
3262152 CTCTGGTGGGCGTA------G--TGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAA
781 CTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
** *
3262209 TTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTACGGCAGCAGGATCGG
846 TTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGG
* * ** * * * *
3262262 TAGCACGCAGAGTGGGACCCGGTCGATCCCCGGCTTGTGCATCCCACCCCGTATGGCCGGCTGAG
1 CAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCC-TCTGGCCGGCTGAG
* * * *
3262327 CACCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGGGTTCATTCCCAATCTAAGCATACA
65 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
** * * * *
3262392 GAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGGCAGCAAATGCTGGGCTCGGTC
130 GAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
** * *
3262457 ATGTGTTGGTGCCGCATTTTTCTTCATCGAGGCAACAT--T------AT---CGGAGAACCTGAC
195 ATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * * *
3262511 CGGTGGCATTGAGGTTCCGACGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTG
260 CGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTG
3262576 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
325 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
3262641 AAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
390 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
3262706 TTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTGTAGCTGAATTTTTTTGTGCATGCGA
455 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
3262771 ACAAAAATATAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAA
520 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
* * *
3262836 AATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
585 AATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
3262901 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
650 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
*
3262966 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGACCCACGGCTTGCGCATCCCGTC
715 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* *
3263031 TCTCTGGTCGGCGTAGTG--C-CCT-CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAA
780 TCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
* ** * ** *
3263092 GTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTGTGATAGCAGGATCGA
845 GTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGG
* * * * * *
3263146 CAACATGTAGAGGGGGACCCGGCCGATCCCCGTCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGC
1 CAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
3263211 ACCCGCACGCTAGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
66 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * *
3263276 AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGCCAGCACATGCTAGGCTCGGGCA
131 AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* *
3263341 TGTGTTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
196 TGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
3263406 GGCGGCATTGGGGTTCC-AGCGATCGGGGGGGCCGAGGGGGGGTGTGCGCACATGATGTGTGATG
261 GGCGGCATTGGGGTTCCGA-CGATC-GGGGGGCC---GGGGGGTGTGCGCACATGATGTGTGATG
* *
3263470 GGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCC
321 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
3263535 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGA
386 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
3263600 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTATGAAT
451 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
3263665 GCCAACAAAAATACAAGGATCATGTCTAACAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTT
516 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
* * *
3263730 AAAAAATCTCAAAACGCAGAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
581 AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
3263795 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGC
646 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** *
3263860 ACACAGAAATATGAAGATGTGCCTAAACCC-CCTACCACCCTATCGATCCACGGCGTGCGCATCC
711 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
3263924 TGTCTCTCTGGCCGGCGTAGTG--C-CCT-CCTGCCCGCTGGTTTCATCGGTTGGCTTAGGCATA
776 CGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATA
* * * * ** *
3263985 CGGAGTTCATTCCCAGTCTAAGAT-TGAACCAGATCGAGGGTTGTGATAGTAGGATCGG
841 CGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCAAGGGTTGCGGCAGCAGGATCGG
* * * * *
3264043 AAGCATGTAGAGGGGGACCC-AGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAA
1 CAGCACGCAGAGGGGGACCCGA-CCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* ** * *
3264107 CACCCGCACGGTAATTTCGTTTGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATAC
65 CACCCGCACGCTCGTTTCG-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * *
3264172 AGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGTGCCAGCACATGCTAGGCTCGGG
129 GGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
** * *
3264237 CATGTGTTGGTGCCATATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
194 CATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
3264302 CCGGCGGCATTGGGGTTCC-AGCGATCGGGGGGGCCGAGGGGGGGTGTGCGCACATGATGTGTGA
259 CCGGCGGCATTGGGGTTCCGA-CGATC-GGGGGGCC---GGGGGGTGTGCGCACATGATGTGTGA
* *
3264366 TGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACC
319 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
3264431 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
384 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
3264496 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTGTAGCTGAATTTTTTTGTGC
449 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
3264561 ATGCGAACAAAAATATAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATT
514 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* * *
3264626 TTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
579 TTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * * *
3264691 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATTAAAATGGAATAG
644 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
3264756 GCACGCAGAAATATGAAGATGTCCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCAT
709 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * * *
3264821 CCCGTCTCTCTGGCCGACGTAAT----GCC-GCCCACCCGCTCATTTCGTCGATTGGGTTAGGCA
774 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCA
* *
3264881 TACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGATCAAGGGTTGTGGCAGCAGGATCGG
839 TACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCAAGGGTTGCGGCAGCAGGATCGG
** * * * * *
3264941 CAGCACAAAGAGGGGGACCTGACGGATCCTCGACTTGTGCATCCCGCCCCTCTGGTCGGCTGAGC
1 CAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * * *
3265006 GCCCGCACCCTCGTTTCGTAGGTTGACTTTGGCATATGGAGTTCTTTCCCAGTCTAAGCATACGG
66 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * ** * ***
3265071 AGATCATTCCAAGTCTAAGATCAGACAAGACCGAGAGTTGCGGCAGCACATGCTGGGCTTACGCA
131 AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * *
3265136 TGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCATCATCGTCAGAGCATCGCCGGAGAACCTGACC
196 TGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
* * * * *
3265201 GGTGGCGTTGGGGTTCCGACGATCTGAGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTG
261 GGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTG
*
3265266 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
325 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
3265331 AAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAG-CATTAAAGTGTCTGAAATGGGGACAAT
390 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * * *
3265395 TTATTCAAATGGTCACAAAATCTTGTACAC-TCTGAGCTTTTAGCTGAATTTTTTTATGCAAGCA
455 TTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * *
3265459 AACAACAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTTCTTTCGAAAAAATTTTAAA
519 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
* * *** * *
3265524 AAATCTCGAACCGTAAAAGGTTGGGAAAATAGTGAAAAATAGAAAACGAGTCATCTTGCCATGAA
584 AAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
3265589 ACTTCACGTGAAGG-TTGAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCAC
649 ACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * * * *
3265653 ACAGCAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCATGTGCATCTCG
713 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * *
3265718 TCTTTCTGGTCGGCATAGT----GCCTGCCCGCCTGCTCGTTTCATCGGCTGGCTTAGGCATACG
778 TCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
* * * * *
3265779 GAGTTCATTCCTAGTCTAAGATCAGACC-GAACCGAGGGTTGTGGCAGGAGGATCGA
843 GAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCAAGGGTTGCGGCAGCAGGATCGG
* * * *
3265835 CAGCATGCAAAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTTTGGCTGGCTGAGC
1 CAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
3265900 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCATATGG
66 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * *
3265965 AGTTCATTCCCAGTCTAAGATCGGATTGGATCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCA
131 AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * *
3266030 TGTGTTGGTGCCACATTTTTCTTCACCGGGG---CA-------A-CATCACCGGAGAACCTGACT
196 TGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
** * * * * **
3266084 GGTAGTATTGGGGTTTCGATGATCGGGGGG-CGGAGGCGGTGTGTGCACATGATGTGCAATGGGT
261 GGCGGCATTGGGGTTCCGACGATCGGGGGGCCGG-GG-GGTGTGCGCACATGATGTGTGATGGGT
*
3266148 GCAGGTACTTGGCCCTTATATTGG
324 GCTGGTACTTGGCCCTTATATTGG
3266172 GGCCAAAACT
Statistics
Matches: 7403, Mismatches: 845, Indels: 266
0.87 0.10 0.03
Matches are distributed among these distances:
868 9 0.00
869 86 0.01
871 1 0.00
874 3 0.00
875 1 0.00
877 91 0.01
878 53 0.01
879 2 0.00
880 629 0.08
881 348 0.05
882 53 0.01
883 251 0.03
884 122 0.02
885 4 0.00
888 2 0.00
889 1 0.00
890 117 0.02
891 165 0.02
892 343 0.05
893 403 0.05
894 514 0.07
895 64 0.01
896 176 0.02
897 681 0.09
898 1620 0.22
899 69 0.01
900 568 0.08
901 210 0.03
902 359 0.05
903 233 0.03
904 217 0.03
905 8 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
CAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
TGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
GGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
ATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGG
Found at i:3262397 original size:26 final size:26
Alignment explanation
Indices: 3262359--3262411 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3262349 GTTGACTTAG
* *
3262359 GCATACGGGGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
3262385 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
3262411 G
1 G
3262412 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:3263271 original size:26 final size:26
Alignment explanation
Indices: 3263242--3263294 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3263232 GTTGACTTAG
*
3263242 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3263268 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3263294 G
1 G
3263295 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3265080 original size:26 final size:26
Alignment explanation
Indices: 3265037--3265089 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3265027 GTTGACTTTG
* * * *
3265037 GCATATGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGATCATTCCAAGTCTAA
3265063 GCATACGGAGATCATTCCAAGTCTAA
1 GCATACGGAGATCATTCCAAGTCTAA
3265089 G
1 G
3265090 ATCAGACAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGATCATTCCAAGTCTAA
Found at i:3265967 original size:26 final size:26
Alignment explanation
Indices: 3265931--3265983 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3265921 GTTGACTTAG
3265931 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
* *
3265957 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
3265983 G
1 G
3265984 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:3266633 original size:26 final size:26
Alignment explanation
Indices: 3266604--3266656 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3266594 GTTGACTTAG
3266604 GCATACGGAGTTCAGTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
*
3266630 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
3266656 G
1 G
3266657 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAGTCTAA
Found at i:3267547 original size:26 final size:26
Alignment explanation
Indices: 3267511--3267563 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3267501 GTTGACTTAG
*
3267511 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3267537 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3267563 G
1 G
3267564 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3268391 original size:26 final size:26
Alignment explanation
Indices: 3268355--3268407 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3268345 GTCGACTTAG
*
3268355 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3268381 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3268407 G
1 G
3268408 ATTAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3270660 original size:25 final size:26
Alignment explanation
Indices: 3270624--3270675 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
3270614 TTTGACTTAG
3270624 GCATATGAAGTTCATT-CCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
*
3270649 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
3270675 G
1 G
3270676 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAGTCTAA
Found at i:3271556 original size:26 final size:26
Alignment explanation
Indices: 3271527--3271579 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3271517 GTTGACTTAG
*
3271527 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3271553 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3271579 G
1 G
3271580 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3273341 original size:26 final size:26
Alignment explanation
Indices: 3273312--3273364 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3273302 GTTGACTTAG
* *
3273312 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
3273338 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
3273364 G
1 G
3273365 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:3273932 original size:904 final size:899
Alignment explanation
Indices: 3270615--3275850 Score: 6948
Period size: 893 Copynumber: 5.9 Consensus size: 899
3270605 GCAAAAAGGT
* * *
3270615 TTGACTTAGGCATATGAAGTTCATT-CCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
1 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * **
3270679 GGACTAGACCGAGGGTTACGGTAGCACATGCTGGACTCAAGCATGTGCTGGTGCCGCATTTTTCT
66 GGAC-AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
** * * * *
3270744 TCACCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACGGGCGGCATTGGGGTTCCGATGA
130 TCGTCGGGGCACCAT---CGG-GCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
3270809 TCGGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
191 TCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
3270874 TGGCCCCCTATCCCTCATCAAACCTTTGAAAACTCACA-CCCCTTAAAGAGCATTGGAGATTTTA
254 TGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * * * *
3270938 CAGGTTTCCTGCTAGCAGCCATGACAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAA
318 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
3271003 ATCTTGTACACTTCGAGTTTTTCGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
383 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
* * * * * * * *
3271068 GTCTACCAAGTTTGGTGCCAAAACTCTTTCTGAAAAAATCTTAAAAAAT-CTGGACCACAAAAAG
448 GTCTACCAAGTTTGGGGCGAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG
3271132 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
513 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
3271197 GGACCATCGTATGAATTTACAAGCCATAAAAATGGCATTGACATGCAGAAATATGAAGATGTGCC
578 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* * * * *
3271262 TAAACCCACCTACCACCCTATTGATTCACGGCTTGCGCATCCCGTCTCTTTGGTCGGCGTAGTAC
643 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* * *
3271327 CTGCCCGCCCGCCCACTCGCTCGTTTCGTTGGTTGGCTTTGGCATACGGAGTTCATTCCCAGTCT
708 CCGCCCGCCCGCCCACTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * *
3271392 AAGATTG-GACCGGACTGAGGGTTACGGCAGGAGGATCGGTAGCACGCAGAGTGCA--ACCCGGC
773 AAGATTGAGACCGGACTGAGGGTTGCGGCAGTAGGATCGGCAGCATGCAGAG-G-AGGACCCGGC
** ** * * *
3271454 CGATCCCTAGCTTACGCATCCTGCCCCTCTAGCCGGCTGAGCGCCCGCACGGTCGTTTCGTGGG
836 CGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGG
*
3271518 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
1 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
3271583 GGACCGAATCGAGGGTTGCGGCAGGACATGCTGGGCTCGGGCATGTGTTGGTGTCGCATTTTTCT
66 GGACAG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* *
3271648 TCGTCGGGGCACCATC--GCA-----GGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGG
130 TCGTCGGGGCACCATCGGGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG
** * * *
3271706 GGGCACCGTAGGGGTGTGTGGACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
195 GGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * * *
3271771 CCCTATCACTCATCAAACCTCGAGAACTCACA-CCCCTTACAGAGAATTTGAGATTTTATAGGTT
259 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
** * *
3271835 TGCTGGTAGTAGCCATTAAAGTGTTTGAAAT-GGGACACTTTTTTCCAATGGTCACAAAATCTTG
324 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
3271899 TACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTAC
389 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
* * * *
3271964 GAAGTTTGGGGCTAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAA
454 CAAGTTTGGGGCGAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAA
* *
3272029 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCA
519 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *
3272094 TTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATGCAGAAATATGATGATGTGCCTAAACC
584 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * *
3272159 CACCTACCACCCTATCGATCCACGGCTTACGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCC
649 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * * *
3272224 GCCCGCCCGCCCGCCTCGTTTCGTCGGTTGGCTTAGGCGTACAGAGTTCATTCCCAGTCTAAGA-
714 GCCCGCCCACTCG-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * *
3272288 TCAGACC-AAATCGAGGGTTGCGGCAGTAGGATTGGCAGCATTCAGAGGGGGACCCGGCCAATCC
778 TGAGACCGGACT-GAGGGTTGCGGCAGTAGGATCGGCAGCATGCAGAGGAGGACCCGGCCGATCC
** * * * *
3272352 CCGGCTTGCACATCCCT-TCCCTCTGGCCGGCTAAGCACCCGCACGCTCGTTTCGTGGG
842 CCGGCTTGTGCAT-CCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGG
* * *
3272410 TTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCACACGAAGTTCATTCCCAGTCTAAGATC
1 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
** * *
3272475 GGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTTGGCATGTGTTGGTGCCGTATTTTTCT
66 GGA-CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * *
3272540 TCGTCAGGG---CA-C---CATCGCCGAAGAACCTGTCCGACGGCATTGGGGTTCCGACGATCGG
130 TCGTCGGGGCACCATCGGGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG
* *
3272598 GGGGACCGTGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
195 GGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * * *
3272663 CCCTATCACTCATCAAACCTCGAGAACTCACACCCCCTTACAGAGAATTTGAGATTTTATAGGTT
259 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
**
3272728 TGCTGGTAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTG
324 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
*
3272792 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTGC
389 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
* * ** *
3272857 CAAGTTTGGGGCCAAAAGTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTTAA
454 CAAGTTTGGGGCGAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAA
*
3272922 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
519 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*
3272987 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACC
584 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
*
3273052 CACCTACCACCCTAACGATCCACGGCTTGCGCATCCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
649 CACCTACCACCCTATCGATCCACGGCTTGCGCAT-CCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * ** * *
3273117 CGCCTGCCCGCTCGCTAATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAG-T
713 CGCCCGCCCACTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* ** * * * **
3273181 TGAGACCAGACTGAGGGTTGCGATAGCAGGATCGACAGAATGCAGAGGAGGACCCAACCGATCCC
778 TGAGACCGGACTGAGGGTTGCGGCAGTAGGATCGGCAGCATGCAGAGGAGGACCCGGCCGATCCC
* ** * *
3273246 CGGCTTGTGCATCCTGTCCCTCTGGCCTACTGAGCACCCGTACGTTCGTTTCGTGGG
843 CGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGG
* *
3273303 TTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAATTCATTCCCAGTCTAAGATC
1 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* ** *
3273368 AGATCAGACCGAGGGTTATGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCT
66 GGA-CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* *
3273433 TCGACGGGGCACCATTGCGGGAGCATCGCCGTAGAACCTGACCGACGGCATTGGGGTTCC-AGCG
130 TCGTCGGGGCACCA-T-C-GG-GCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CG
* * *
3273497 ACCGGGGGGGCTGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
190 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
**
3273562 GGCCCCCTAT-CCTACATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGT
255 GGCCCCCTATCCCT-CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
3273626 AGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
319 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * **
3273691 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGGTGCATGCCAACAAAAATCCAAGGATCGTG
384 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
* * * * *
3273756 TCTA-CAATGATTGGGGTGAAAACCCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGCAAAAAC
449 TCTACCAA-GTTTGGGGCGAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG
* * * *
3273820 TTTCAAAAATCATAAAAAATAGAAAATGAGTCGTCTTGCCATAAAACTTCAGGTGAAGGCTTAAG
513 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
3273885 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCAAAAATATGAAGAAGTGCC
578 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* *
3273950 T-AA---A-C--CCA-CC--T---T-----G---G-G-ATCCCGCCCCTCTGGCC-G-GT--TG-
643 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* *
3273987 -AG--CGCCCG--CA--CGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
708 CCGCCCGCCCGCCCACTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * ** * *
3274045 AAGATCGA-ATCGGACCGAGGGTTATGGCAGTAGGATCGGCAGCA-GATAGAGG-GGCACCCGAC
773 AAGATTGAGACCGGACTGAGGGTTGCGGCAGTAGGATCGGCAGCATG-CAGAGGAGG-ACCCGGC
* * * * * *
3274107 CGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGTCCGCTCATTTCATGGG
836 CGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGG
* * *
3274171 TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATGCAGAGTTCATTCCCAGTCTAAGATC
1 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
3274236 AGACCGGACCGAGGGTTGCGGCAACACATGCTGGGCTCGGGCATTTGCTGGTACCGCATTTTTCT
66 GGA-CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* *
3274301 TCGTC---G-------GGGCATCGCCGGAGAACCTGAACGAAGGCATTGGGGTTCCGACGATCGG
130 TCGTCGGGGCACCATCGGGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-G
* ** *
3274356 GGGGGGTCGGTGGGGTACGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTTTATTGGC
194 GGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
3274421 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
258 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
3274486 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
323 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
*
3274551 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTA
388 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* * * * * *
3274616 CCAAGTTTGGGGTGAAAAATCCTTCGGAAAAAATTTTAAAAAATCCCAAACCACAAAACGTTTCA
453 CCAAGTTTGGGGCGAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
* * *
3274681 AAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
518 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* ** *
3274746 ATTGAATGAATTTACAAGCCATAAAAATGGCATTTACATGCAGAAATATGAAGATGTACCTAAAC
583 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * *
3274811 CCACCTACCGCCCTAACGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGT----GCC
648 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * * *
3274872 CGCCCGCCCA----CTCGTTTCGTCTGTTGGCTTAGGCATATGGAGTTTATTCCCAGTTTAAGA-
713 CGCCCGCCCACTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * ** * * *
3274932 TCAGACCGGACTGAGGGTTGCAGCAGTAGGATCAACAGCACGCAGAGGGGGACCCGGTCGATCCC
778 TGAGACCGGACTGAGGGTTGCGGCAGTAGGATCGGCAGCATGCAGAGGAGGACCCGGCCGATCCC
* * * * * *
3274997 CGGGTTGTGCATCCCGCCCTTCTGGCCGGCTGAGTGCCCCTACGCTCATTTCGTGGG
843 CGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGG
* *
3275054 TTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATC
1 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
3275119 GGACCAGACCGAGGCTTCCGGTAGCACATGCTGGGCTCGGGGATGTGCTGGTGCCACATTTTTCT
66 GGA-CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* *
3275184 TCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGA
130 TCGTCGGGGCACCAT---CGG-GCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
* * * *
3275249 TCGAAGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATT
191 TCG-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
*
3275314 GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
255 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * *
3275379 GGTTTGCTGCCAGTAGCCATTAAAGCGTCTGCAATGGGGACACTTTTTCCAAATGGTCACAAAAT
320 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
3275444 CTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAAATACAGGGATCACGT
385 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGT
* *
3275509 CTACCAAGTTTGGGGCGAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTT
450 CTACCAAGTTTGGGGCGAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTT
* *
3275574 TAAAAAATCATGAAAAATAAAAAACGAG-CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
515 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
3275638 ACCATTGTATGAATTTACAAG-CATAAAAATGGCATTGGC-TGCAGAAATATGAAGATGTGCCTA
580 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* ** * * *
3275701 AACCCACCTACCA-CCTATTGATCCACGGCTTGCGCATCCCACCTCTCTAGCCGACGTAGTGCCT
645 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
* * * * * * *
3275765 GCCTGCCTGCCCACCCGCTCGTTCCGTCGGTTGGCTTAGGGATACGGAGTTCAATCCCAATCTAA
710 GCCCGCCCGCCCACTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
3275830 GATTG-GACCGGACTGAGGGTT
775 GATTGAGACCGGACTGAGGGTT
3275851 TTGGCAACAC
Statistics
Matches: 3840, Mismatches: 391, Indels: 207
0.87 0.09 0.05
Matches are distributed among these distances:
854 39 0.01
855 12 0.00
856 401 0.10
857 8 0.00
860 1 0.00
861 1 0.00
863 2 0.00
864 2 0.00
865 1 0.00
867 3 0.00
868 257 0.07
869 4 0.00
870 1 0.00
872 5 0.00
874 2 0.00
876 2 0.00
877 1 0.00
878 3 0.00
879 16 0.00
880 14 0.00
881 5 0.00
882 2 0.00
883 268 0.07
884 3 0.00
885 2 0.00
886 2 0.00
887 2 0.00
888 1 0.00
889 2 0.00
890 132 0.03
891 278 0.07
892 501 0.13
893 719 0.19
894 58 0.02
895 56 0.01
896 335 0.09
897 50 0.01
898 3 0.00
899 2 0.00
900 59 0.02
901 2 0.00
902 2 0.00
903 170 0.04
904 411 0.11
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
GGACAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
CGTCGGGGCACCATCGGGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCGAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
CCGCCCACTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGA
GACCGGACTGAGGGTTGCGGCAGTAGGATCGGCAGCATGCAGAGGAGGACCCGGCCGATCCCCGG
CTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGG
Found at i:3274214 original size:26 final size:26
Alignment explanation
Indices: 3274180--3274232 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3274170 GTTGACTTAG
3274180 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
3274206 GCATGCAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3274232 G
1 G
3274233 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3275092 original size:26 final size:26
Alignment explanation
Indices: 3275063--3275115 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3275053 GTTGACTTAG
*
3275063 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
3275089 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
3275115 G
1 G
3275116 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:3276683 original size:719 final size:717
Alignment explanation
Indices: 3275091--3277289 Score: 3350
Period size: 719 Copynumber: 3.1 Consensus size: 717
3275081 CAGTCTAAGC
* * * ** * *
3275091 ATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGCTTCCGGTAGCACATGCTGGGCT
1 ATACGGAGTTCAATCCCAATCTAAGATCGGACCGGACCGAGGGTTTTGGCAACACATGCTGGGCT
* ** * ** *
3275156 CGGGGATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAAC
66 CGGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGTCGGAGAAC
* * * * ** *
3275221 CTGACCGGCAGCATTGGGGTTCCGACGATCGAAGGGGTCGGG-GGGGTGTGCGCACATGATGTGC
131 CTGACCGACGGCATT-AGGTTCCGGCGATCGGGGGGGCCGGGAGGGGTGTGCGCACATGATGTGC
* *
3275285 GATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
3275350 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCG-TCTG-CAA
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTC-GAC-A
* *
3275413 TGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
3275478 GTGCATGCCAAAAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCGAAAACTCCTTCCGAAAA
388 GTGCAAGCCAAAAAAAATACAAGGATCTCGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAA
* *
3275543 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAAAAAACGAG-CGTCT
452 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
3275607 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-CATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
3275671 ATTGGC-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATTGATCCACGGCTTGC
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
3275734 GCATCCCACCTCTCTAGCCGACGTAGTGCCTGCCTGCCTGCCCACCCGCTCGTTCCGTCGGTTGG
647 GCATCCCACCTCTCTAGCCGACGTAGTGCCCGCCT-CCTGCCCACCCGCTCGTTCCGTCGGTTGG
3275799 CTTAGGG
711 CTTAGGG
* *
3275806 ATACGGAGTTCAATCCCAATCTAAGATTGGACCGGACTGAGGGTTTTGGCAACACATGCTGGGCT
1 ATACGGAGTTCAATCCCAATCTAAGATCGGACCGGACCGAGGGTTTTGGCAACACATGCTGGGCT
* *
3275871 CGAGCATGTGCTGGTGCCACATTTTTCTTCACCGATGCACCATCGTCGGAGCATCGTCGGAGAAC
66 CGGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGTCGGAGAAC
* *
3275936 CTGACCGACGGCATTGAGGTTTCGGCGATCGGGGGGGCCGGGAGGGGTGTGCGCACATGATGTGT
131 CTGACCGACGGCATT-AGGTTCCGGCGATCGGGGGGGCCGGGAGGGGTGTGCGCACATGATGTGC
*
3276001 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
3276066 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCCATTAAAGTGTTCGACAT-
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTCGACATG
* *
3276130 GGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
3276195 GCAAGCCAACAAAAATACAAGGATCTCGTCTACCATGTTTGGGCCCAAAACTCCTTCCGAAAAAA
390 GCAAGCCAAAAAAAATACAAGGATCTCGTCTACCAAGTTTGGG-CCAAAACTCCTTCCGAAAAAA
* *
3276260 TTTTAAAAAATCTCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
454 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
3276325 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
3276390 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
584 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
*
3276455 ATCCCACCTCTCTAGCCGACGTAGTGCCCGCCTACCCGCCCACCCGCTCGTTCCGTCGGTTGGCT
649 ATCCCACCTCTCTAGCCGACGTAGTGCCCGCCT-CCTGCCCACCCGCTCGTTCCGTCGGTTGGCT
3276520 TAGGG
713 TAGGG
* * **
3276525 ATACGGAGTTCAATCCCAATCTAAGATCGGACTGGACCAAGGGTTTTGGCAACACATATTGGGCT
1 ATACGGAGTTCAATCCCAATCTAAGATCGGACCGGACCGAGGGTTTTGGCAACACATGCTGGGCT
**
3276590 CGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGTCGGAGAAC
66 CGGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGTCGGAGAAC
* * * *
3276655 CTGACCGATGGCATTACGGCTCCGGCGATCGGGGGGGCCAGGAGGGGTCTGCGCACATGATGTGC
131 CTGACCGACGGCATTA-GGTTCCGGCGATCGGGGGGGCCGGGAGGGGTGTGCGCACATGATGTGC
*
3276720 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
3276785 CCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTTTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTCGACATG
*
3276850 GGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
3276915 GCATA-CCAAGAAAAATACAAGGATCAT-GTCTATCAAGTTTTGGGTCAAAACTCCTTTC-AAAA
390 GCA-AGCCAAAAAAAATACAAGGATC-TCGTCTACCAAG-TTTGGGCCAAAACTCCTTCCGAAAA
* *
3276977 AATTTT-AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
3277041 TGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
3277106 ATTGGTATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGA
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** * * * *
3277171 TCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCTCCTGCCCA----CTCGTTTCGTTGGTTGG
647 GCATCCCACCTCTCTAGCCGACGTAGTGCCCG-CCTCCTGCCCACCCGCTCGTTCCGTCGGTTGG
*
3277232 CTTAGGC
711 CTTAGGG
* * ** *
3277239 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTGTGGCA
1 ATACGGAGTTCAATCCCAATCTAAGATCGGACCGGACCGAGGGTTTTGGCA
3277290 GCAGGATTGG
Statistics
Matches: 1360, Mismatches: 110, Indels: 29
0.91 0.07 0.02
Matches are distributed among these distances:
714 68 0.05
715 315 0.23
716 196 0.14
717 21 0.02
718 250 0.18
719 398 0.29
720 104 0.08
721 8 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (717 bp):
ATACGGAGTTCAATCCCAATCTAAGATCGGACCGGACCGAGGGTTTTGGCAACACATGCTGGGCT
CGGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGTCGGAGAAC
CTGACCGACGGCATTAGGTTCCGGCGATCGGGGGGGCCGGGAGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTCGACATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CAAGCCAAAAAAAATACAAGGATCTCGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCACCTCTCTAGCCGACGTAGTGCCCGCCTCCTGCCCACCCGCTCGTTCCGTCGGTTGGCTTAG
GG
Found at i:3278320 original size:26 final size:26
Alignment explanation
Indices: 3278268--3278320 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3278258 GTTGACTTAG
* *
3278268 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
3278294 GCATACGGAGTTCTTTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3278320 G
1 G
3278321 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:3278654 original size:897 final size:893
Alignment explanation
Indices: 3277396--3281692 Score: 5615
Period size: 863 Copynumber: 4.8 Consensus size: 893
3277386 GTTGACTTAG
* * ** **
3277396 GCATACAGAGTTCATTCCCAGTCTAAGATCATATC-GAAATGAGGGTTATGGCAGCACATGCTGG
1 GCATACAGAGTTCATTCCCAGTC-AAGATCAGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGG
* ** *
3277460 GCTCGGGCATGTGTTGGTGTCGCATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCACCGGAG
64 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATC--CGGAGCAT--CCGGAG
*
3277525 AACCTTACCGGTA-GCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGT
125 AACCTAACCGG-AGGCATTGGGGTTCCGACGATCGGGGGGGC-GGGGGGTGTGCGCACATGATGT
* *
3277589 GCGATGGGTGCTGGTACTTGGCCCTAATATTGGCCCCCTATCCCGCATCAAACCTCGAGAACTCA
188 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
3277654 CACCCCCTTAAAGAGCATTTGAGATTTAACAGGTTTGCTGCCGGTAGCAATTAAAGTGTCTAAAA
253 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
3277719 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
318 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
3277784 ATGCATGCCAACAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAACTCCTAT-C-AAA
383 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCCGAAA
* *
3277847 ACAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAATTCATGAAAAATAGAAAACGAGTCGT
447 A-AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
3277912 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATG
511 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
3277977 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
576 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
3278042 GCG-ATCCCGTCTCTTTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
641 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * * *
3278106 TAGGCCTACGAAGTTCACTCTCAGTCTAAGATTGGATCAGATCGAGGGTTACGGCAGCAAGATCG
706 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGGCAGCAGGATCG
* * * * * * * ** *
3278171 GCAGCACGTAGAGGGGGACTCGGCCAATCCCCCGCTTGCGTATCCCGCCCCTCTGGCTGGTTGAG
771 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAA
* * * * *
3278236 CACCCACACGTTTGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAA
836 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
3278294 GCATACGGAGTTCTTTCCCAATCTAAGATCAGACCAGATCGAGGGTTACGGCTGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTC-AAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
3278359 CTCGGGCATATGTTGGTGCCGTATTTTTCTTCACCGGGGCACCATCACCGGAGCATCACTGGAGA
65 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCAT--CCGGAGCATC-C-GGAGA
* * * *
3278424 ACCTAATCGGAGGCATTGGGGTTTCGACGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGTG
126 ACCTAACCGGAGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGCG
*
3278489 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCAT-GAGAACTCACA
191 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACA
* * * *
3278553 CCCCCTTAAAGAGCATTTGATATTTTACAAGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAATG
255 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
3278618 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGT
320 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
3278683 GCATGCCAACAAAAATACAAGGATCATGTCTACGAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
385 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
3278748 TTTTAAAAAATCTCC-AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
450 TTTTAAAAAATC-CCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
3278812 GCTATGAAACTTCACATGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCA
514 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
3278877 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
579 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
3278942 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTTTGTTTCGTCGGTTGGCTTAG
644 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * **
3279007 GCATACGGATTTCATTCCCATTCTAAGATCGGACCAGATCGAGGGTTGCAGCAATAGGATCGGCA
709 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGGCAGCAGGATCGGCA
* * *
3279072 GCACGCAGAGAAGGAACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG-CTGAACG
774 GCACGCAGAG-GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAACA
* * *
3279136 CCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAA
838 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
3279192 GCATGCAGAGTTCATTCCCAGTCAAAGATCGGACCGGACCGATGGTTGTGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTC-AAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** *
3279257 CTCGGGCATGTGTTGGTGCCATATTTTTCTTCGCCGGGGCACCAT-C---G--T-CGGAGAACCT
65 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCCGGAGCATCCGGAGAACCT
* * * *
3279315 GATC-GACAGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
130 AACCGGA-GGCATTGGGGTTCCGACGATCGGGGGGG-C-GGGGGGTGTGCGCACATGATGTGCGA
3279379 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
192 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * * *
3279444 CCCTTAAAAGAGCATTTAAGATTTTACAGGTTTGCTGCTAGTAACCATTAAAGTGTTTGAAATTG
257 CCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
3279509 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAAGTTTTTTGTG
321 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* ** * * *
3279574 TATGCCAACAAAAATAGGAGGATCACGTCTAGCAGGTTTGAGGCCAAAACTCCTTCCGAAAAAAT
386 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
** * *
3279639 TTTAAAAAATCTTGAAACGCAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGG
451 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT-G
* *
3279704 CAATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
515 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
3279769 TGCCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
580 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
3279834 ATCCCGTTTCTCTGGCCGACGT-GCTGCACACCCGCTCGCCCGCCAGCTCGTTTCGTCGGTTGGC
645 ATCCCGTCTCTCTGGCCGACGTAG-TG----CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * *
3279898 TTAGGCATACGGAGTTCATTCCCAGTCTAACATCAGATC-GAACTGAGAGTTGCGGCAGCAGGAT
705 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATC-GAGGGTTGCGGCAGCAGGAT
* ** * * *
3279962 CGACAGCACGCAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCAACTG
769 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTG
* * * *
3280027 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGCAGTTCATTCCCAGTCTAA
834 AACACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
3280087 GCATACGGAGTTCATTCCCAGTCAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGAC
1 GCATACAGAGTTCATTCCCAGTCAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* ** * *
3280152 TCGGGCATGTGCTGGTATCGCATTTTACTTCACCGGGGCACCATCGTCGGAGCATCGTCGGGGAA
66 TCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATC--CGGAGCATC--CGGAGAA
* * * * ** *
3280217 CTTGACCGGCGGCATTGAGGTTCCGGTGATC------G-GGGGGGTGTGCGGACATGATGTGCGA
127 CCTAACCGGAGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGA
* * ** * *
3280275 TGGGTGCTGCTACTGGGCTATTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAGCTCACACC
192 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
3280339 CCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGG
257 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * ** *
3280404 AACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAAAATTTTTTTGTGA
322 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
*
3280469 ATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
387 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * ** *
3280534 TTCAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAATTGAGTTGTCTTGCC
452 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* **
3280599 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATTCCATTG
517 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** * * *
3280664 GCATGTAGAAATATGTAGATGTGCATAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCAT
582 GCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
3280729 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGTCCGACCGCTCATTTCGAT-GGTTGGCTT
647 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-C---CCGCCCGCTCGTTTCG-TCGGTTGGCTT
* * * * * * *
3280793 AGGCATACAGAGTTAATTCCCAGTCTATGATCAGAAT-GGATCGAGGGTTGCCGCAGCAGGATCA
707 AGGCATACGGAGTTCATTCCCAGTCTAAGATC-GGATCAGATCGAGGGTTGCGGCAGCAGGATCG
* * * * *
3280857 GCAGCACGCAGA-GGGGACCCGATCGATCCCCAGCTTGCGCATCCTGCCTCTCTAGCCGACTGAA
771 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAA
3280921 CACCCGCACGCTCGTTTCGTGGGTTGAC-T-----TA--G-G--CA-T-----TC---
836 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
3280959 G------GAGTTCATTTCCAGTCAAGATCAGACCAGACTGAGGGTTGCGGTAGCACATTCTGGGC
1 GCATACAGAGTTCATTCCCAGTCAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* *
3281018 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCAT-C----C--CCGAAGAACCTA
66 TCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCCGGAGCATCCGGAGAACCTA
* * * **
3281076 ACTGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGTGTGCGCACATGATGTGCGATGGG
131 ACCGGAGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
3281141 TGCTGGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
196 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
3281206 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAATGGGGACA
261 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
3281271 CTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
326 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * ** * * *
3281336 CAAAAAAAATGCAAGGATCACGTCTACTAAGTTTGGATCCAAAACTCCATCTGAAAAAATTTTTA
391 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * ** ** *
3281401 AAAATCTCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAGTAGAAAACGAGTCGTCTTGCCATGA
456 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
3281466 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCATTGGCAC
521 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * * *
3281531 -TCAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTGTCGATCCATGGCTTGCGCATCTC
586 AT-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * * *
3281595 GCCTCTCTAGCTGACATAGTGCCCGCCTGCCCGCCCACCTGTTCGTTTCGTCGGTTGGCTTAGGG
650 GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG--C-CC-GCTCGTTTCGTCGGTTGGCTTAGGC
3281660 ATACGGAGTTCATTCCCAGTCTAAGATCGGATC
711 ATACGGAGTTCATTCCCAGTCTAAGATCGGATC
3281693 GGACGGAGGG
Statistics
Matches: 2999, Mismatches: 339, Indels: 157
0.86 0.10 0.04
Matches are distributed among these distances:
855 31 0.01
857 1 0.00
859 4 0.00
861 1 0.00
862 55 0.02
863 455 0.15
866 92 0.03
872 1 0.00
875 2 0.00
880 1 0.00
881 2 0.00
883 1 0.00
886 4 0.00
887 36 0.01
888 3 0.00
889 99 0.03
890 228 0.08
891 148 0.05
892 70 0.02
893 222 0.07
894 346 0.12
895 211 0.07
896 52 0.02
897 446 0.15
898 417 0.14
899 40 0.01
900 2 0.00
902 1 0.00
905 27 0.01
906 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (893 bp):
GCATACAGAGTTCATTCCCAGTCAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCCGGAGCATCCGGAGAACCTA
ACCGGAGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
AAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAACACCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:3283421 original size:26 final size:26
Alignment explanation
Indices: 3283392--3283442 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
3283382 GGACTTCGGG
*
3283392 ATACGGAGTTTATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
*
3283418 ATACGGAGTTCATTCTCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
3283443 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Done.