Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 24 of 129
Found at i:3284655 original size:878 final size:877
Alignment explanation
Indices: 3281637--3284733 Score: 4117
Period size: 862 Copynumber: 3.5 Consensus size: 877
3281627 GCCCACCTGT
* * * * * *
3281637 TCGTTTCGTCGGTTGGCTTAGGGATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGA-CGGAG
1 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAG
* *
3281701 GGTT-TCAGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCAC
65 GGTTGTCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCAC
* * * * *
3281765 CATCGTCGGAGCATCATCGGAGAACCTGACCGGCGACATTAGGGTTCCGGCAATCGGGGGG-CCG
130 CATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGTCC-
3281829 GGAGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
194 GGAGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
3281894 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
259 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
3281959 AGTAGCCATTAATGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACCAAATCTTGTACACTT
324 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
3282024 CGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATTCAAGGATCACGTCTACCAGGTTT
389 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * * *
3282089 AGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAATTCCTGAACCACAAAAAGTTTCGAAAATCAT
454 GGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAACT-C-GAACCGCAAAAAGTTTAGAAAATCGT
* *
3282154 GAAAAATTGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGTCTTAAGGGTCCATTGTATG
517 GAAAAATTGAAAAAGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGTCCATTGTATG
* *
3282219 AATTTTTAAGCCATAAAAATGGCATTGGTACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
582 AATTTATAAGCCATAAAAATGGCATTGGTACATAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * * *
3282284 CACCTCTAT---T----GTCTTGCGCATCCCGTCTCTCTCGTCGGCATAGTGCCCGTCCGCCCGC
647 CACC-CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-CCCGCCC-C
* * *
3282342 TCG-G-TCGCTCGTTTCGTCAGTTGGCTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGATCAAA
709 CCGCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCAGA
* * * * *
3282404 CTGGACCGAGTGTTACGACAGCAAGATCGGCAAGCACGCAGAGGGGGCCCCGGTCGATCCCCGAC
773 CTAGACCGAGTGTTACGATAGCAGGATCGGC-AGCACGCAGAGGGGGACCCGATCGATCCCCGAC
** * * *
3282469 TTACT-CATCCTGCCTCTCTGGCCGACTGAGCACCCGCACGC
837 TT-CTGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGC
* *
3282510 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGG
1 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGG
* * * *
3282575 GTTG-CCGTAGAACATGCTGGGCTCGGGCATGTGCTAGG-GCCGTATTTTTCTTCACCGGGGCAC
66 GTTGTCAGCAGCACATGCTGGGCTCGGGCATGTGCT-GGTGCCGTATTTTTCTTCATCGGGGCAC
** *
3282638 CATC--C----C--CA---GAGAACCTGATTGGCGGCATTGGGGTTCCGGCGATCGGGGGGGT-C
130 CATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGTCC
* * * ** *
3282691 GGTGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTCACCCTTATAATGGCCCCCTATC
194 GGAGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
3282756 CTTCATCAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
259 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
3282821 AGTAGCCTTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
324 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
*
3282886 CGAGTTTTCAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
389 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * *
3282951 GGGGCCAAAACTCCTTTCGAAAAAATTTAAAAAAATCTTGATCTGCAAAAAGTTTAAAAAATCGT
454 GGGGCCAAAACTCCTTTCGAAAAAATTT-TAAAAA-CTCGAACCGCAAAAAGTTTAGAAAATCGT
3283016 GAAAAATTGAAAAAGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGTCCATTGTATG
517 GAAAAATTGAAAAAGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGTCCATTGTATG
*
3283081 AATTTATAAGCCATAAAAATGGCATTGGTACATAGAAATATGAAGATGTGCCTAAACCCACCTGC
582 AATTTATAAGCCATAAAAATGGCATTGGTACATAGAAATATGAAGATGTGCCTAAACCCACCTAC
*
3283146 CACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG---CCCG---CCCG
647 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCGCCCCCCG
* * * **
3283205 C-C-CGCTCGTTTCGTCGGTTGGCTTAGGCAGACGGAGTTCAATCCCAGTCTAAGATTGGACTAG
712 CGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTAG
* * * * * * **
3283268 ACCGAGTGTTGCGGTAGTAGGATCGACAGCACGTAGAGGGGGACCCTATCGATCTTCGACTTGC-
777 ACCGAGTGTTACGATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTT-CT
* *
3283332 GTATCCCACCCCTCTGGCCGGCTGAGCGCCCACACGC
841 GCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGC
*
3283369 TCGTTTCATGGGTGGACTTCGGGATACGGAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCT
1 TCGTTTCAT--G-GG--TT---G--AC--------TT---AG-----GCATACGGAGTTCATTCC
* * *
3283434 CAGTCTAAGATCAGATCGGATCGAGGGTTG-CAGCAGCACATGCTGGGCTCGGGCATATGTTGGT
40 CAGTCTAAGATCAGACCGGATCGAGGGTTGTCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * *
3283498 GCCGTATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCACCGGAGAACCTGATCC-GAGGCAT
105 GCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGA-CCGGCGGCAT
* * *
3283562 TGGGGTTCCGACGATC-GGGGGTCGGGGGTCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
169 TGGGGTTCCGACGATCGGGGGGTC--CGG--AGGGGTGTACGCACATGATGTGCGATGGGTGCTG
* **
3283626 GCACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAG
230 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
3283690 AGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
295 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
3283755 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAACA
360 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
** *
3283820 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCAGTTCGAAAAGATTTTAAAAACT
425 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAACT
* * * * * *
3283885 CAAACCGTAAAAAGTTT-GAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGACACTTCA
490 CGAACCGCAAAAAGTTTAGAAAATCGTGAAAAATTGAAAAAGAGTCGTCTTGCCATGAAACTTCA
* * * * * *
3283949 CGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCACACATAAA
555 CGTGAAGGCTTAAGGGTCCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGTACATAGAAA
* * *
3284014 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTCGCGCATCACGTTTCTCT
620 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* *
3284079 GGCCGACGTAGTGCCCACCCGCCCACCCGCCTGCTCGCTTGTTTCATCGGTTGGCTTAGGCATAC
685 GGCCGACGTAGTGCCC-CCCGCCC-CCCG-C-GCTCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * *
3284144 GAAGTTCATTCCCAGTCTAAGATCAGA-TCAGATCGAGGGTTATGATAGCAGGATCGGCAGCGCA
746 GAAGTTCATTCCCAGTCTAAGATCAGACT-AGACCGAGTGTTACGATAGCAGGATCGGCAGCACG
* * * * *
3284208 CAGAGGGGGACCCGACCGATCCCCGCCTTTTGCATCCCACCCCTCTGGTCGGCTGAGCGCCTGCA
810 CAGAGGGGGACCCGATCGATCCCCGACTTCTGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCA
*
3284273 TGC
875 CGC
*
3284276 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGG
1 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGG
*
3284341 GTTGTC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCAGC
66 GTTGTCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACC
* * *
3284405 ATTGTCGGAGCATCGCCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGTCC-G
131 ATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGTCCGG
*
3284469 AGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCTTATCC
196 A-GGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
3284533 CTCATCAAACATCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
260 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
3284598 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
325 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
3284663 AAGTTTTTAGCTGAATTTTTTTGTGCTTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
390 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
3284728 GGGCCA
455 GGGCCA
3284734 TCCCCGGCAT
Statistics
Matches: 1956, Mismatches: 187, Indels: 157
0.85 0.08 0.07
Matches are distributed among these distances:
859 67 0.03
860 76 0.04
861 5 0.00
862 453 0.23
863 12 0.01
864 7 0.00
865 2 0.00
867 2 0.00
868 29 0.01
869 2 0.00
871 1 0.00
873 116 0.06
874 3 0.00
877 15 0.01
878 239 0.12
879 1 0.00
880 4 0.00
881 146 0.07
882 8 0.00
884 2 0.00
885 99 0.05
886 2 0.00
887 1 0.00
889 2 0.00
891 1 0.00
893 2 0.00
894 6 0.00
895 174 0.09
896 45 0.02
897 9 0.00
898 220 0.11
899 53 0.03
902 2 0.00
903 4 0.00
904 3 0.00
905 1 0.00
906 2 0.00
907 140 0.07
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (877 bp):
TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGG
GTTGTCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACC
ATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGTCCGG
AGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
GGCCAAAACTCCTTTCGAAAAAATTTTAAAAACTCGAACCGCAAAAAGTTTAGAAAATCGTGAAA
AATTGAAAAAGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGTCCATTGTATGAATT
TATAAGCCATAAAAATGGCATTGGTACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCGCCCCCCGCGCT
CGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTAGACCG
AGTGTTACGATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTCTGCATC
CCACCCCTCTGGCCGGCTGAGCGCCCGCACGC
Found at i:3284752 original size:15 final size:15
Alignment explanation
Indices: 3284732--3284777 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
3284722 AGTTTGGGGC
3284732 CATCCCCGGCATGCA
1 CATCCCCGGCATGCA
3284747 CAT-CCC-GC---C-
1 CATCCCCGGCATGCA
3284756 CATCCCCGGCATGCA
1 CATCCCCGGCATGCA
3284771 CATCCCC
1 CATCCCC
3284778 AGTCTAAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 12
0.68 0.00 0.32
Matches are distributed among these distances:
9 3 0.12
10 4 0.16
11 2 0.08
13 2 0.08
14 4 0.16
15 10 0.40
ACGTcount: A:0.17, C:0.54, G:0.15, T:0.13
Consensus pattern (15 bp):
CATCCCCGGCATGCA
Found at i:3284763 original size:24 final size:24
Alignment explanation
Indices: 3284731--3284776 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
3284721 AAGTTTGGGG
3284731 CCATCCCCGGCATGCACATCCCGC
1 CCATCCCCGGCATGCACATCCCGC
3284755 CCATCCCCGGCATGCACATCCC
1 CCATCCCCGGCATGCACATCCC
3284777 CAGTCTAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.17, C:0.54, G:0.15, T:0.13
Consensus pattern (24 bp):
CCATCCCCGGCATGCACATCCCGC
Found at i:3285182 original size:461 final size:462
Alignment explanation
Indices: 3284349--3285194 Score: 1426
Period size: 461 Copynumber: 1.8 Consensus size: 462
3284339 GGGTTGTCGC
* * * * * *
3284349 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCAGCATTGTCGGA
1 AGCACATGCTGGGCTCAGCCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGA
* *
3284414 GCATCGCCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGTCCGAGGGGGTGTA
66 GCATCGCCGGAGAACCTGACCGGCGGCATTGGGGATCCGACGATCGGGGGGTCCGAGGGGGTGTA
3284479 CGCACATGATGTGCGATGGGTGCTGGTACTTGCCCTTATATTGGCCCCTTATCCCTCATCAAACA
131 CGCACATGATGTGCGATGGGTGCTGGTACTTGCCCTTATATTGGCCCCTTATCCCTCATCAAACA
*
3284544 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
196 TCGAGAACTCACACCCCCGTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
3284609 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGC
261 AGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGC
* * *** *
3284674 TGAATTTTTTTGTGCTTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCATCCCC
326 TGAATTTTTTTATCCACACCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCATCCCC
3284739 GGCATGCACATCCCGCCCATCCCCGGCATGCACATCCCCAGTCTAAGATCGGACCGGACCAAGGT
391 GGCATGCACATCCCGCCCATCCCCGGCATGCACATCCCCAGTCTAAGATCGGACCGGACCAAGGT
3284804 TTACGGT
456 TTACGGT
* * *
3284811 AGCACATGCTGGGCTCAGCCATGTGTTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTTGGA
1 AGCACATGCTGGGCTCAGCCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGA
** * * *
3284876 GCATCGTTGGAGAACCTGACTGGCGGCATTGGGGATCCGGCGATCGGGGGG-CCG-GGGGGTGTG
66 GCATCGCCGGAGAACCTGACCGGCGGCATTGGGGATCCGACGATCGGGGGGTCCGAGGGGGTGTA
3284939 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAAC
131 CGCACATGATGTGCGATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCTTATCCCTCATCAAAC
* *
3285004 CTCGAGAACTCACACCCCCGTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTA
195 ATCGAGAACTCACACCCCCGTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
3285069 AAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAG
260 AAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAG
3285134 CTGAATTTTTTTATCCACACCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCA
325 CTGAATTTTTTTATCCACACCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCA
3285195 AAACTCCTTC
Statistics
Matches: 356, Mismatches: 27, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
460 39 0.11
461 216 0.61
462 101 0.28
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27
Consensus pattern (462 bp):
AGCACATGCTGGGCTCAGCCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGA
GCATCGCCGGAGAACCTGACCGGCGGCATTGGGGATCCGACGATCGGGGGGTCCGAGGGGGTGTA
CGCACATGATGTGCGATGGGTGCTGGTACTTGCCCTTATATTGGCCCCTTATCCCTCATCAAACA
TCGAGAACTCACACCCCCGTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGC
TGAATTTTTTTATCCACACCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCATCCCC
GGCATGCACATCCCGCCCATCCCCGGCATGCACATCCCCAGTCTAAGATCGGACCGGACCAAGGT
TTACGGT
Found at i:3286525 original size:26 final size:26
Alignment explanation
Indices: 3286496--3286548 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3286486 GTTGACTTAG
*
3286496 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
*
3286522 GCATACGGAGTCCATTCTCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
3286548 G
1 G
3286549 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:3288283 original size:26 final size:26
Alignment explanation
Indices: 3288247--3288298 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
3288237 TGACTTAGGC
*
3288247 ATACGGAGTTCATTCGCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
3288273 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
3288299 TCAGACCAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:3289181 original size:26 final size:26
Alignment explanation
Indices: 3289130--3289182 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3289120 GTTGACTTAG
* *
3289130 GCATATGGAGTTCATTCCCGGTCTAA
1 GCATATGGAGTTCATTCCCAGCCTAA
3289156 GCATATGGAGTTCATTCCCAGCCTAA
1 GCATATGGAGTTCATTCCCAGCCTAA
3289182 G
1 G
3289183 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGCCTAA
Found at i:3290017 original size:899 final size:889
Alignment explanation
Indices: 3287405--3290786 Score: 4444
Period size: 870 Copynumber: 3.8 Consensus size: 889
3287395 TTAGGCATAC
* * * * **
3287405 GGAGTTGATTCCCAGTCTAAGATCGGATC-GAACCAAGGGTTACGACAGCACATGCTGGGCTCGG
1 GGAGTTCATTCCCAG-CTAAGATCAGACCAG-A-CGAGGGTTACGGTAGCACATGCTGGGCTCGG
* ** * * *
3287469 GCATGTGTTGGTGCCGTATTTTTCTTCCCCGGGG-----CA-C---CATCGCCGAAGAACCTGAT
63 GCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCCCATCACCGAGCATCGTCGGAGAACCTGAC
* * **
3287525 CGGCGGCATTAGGGTTCTAACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
128 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
3287590 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
193 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
3287655 AAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGTAGACATTAAAGTATCTGAAATGGGGACAC
258 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
3287720 TTTTTTCAAACGGTCACAAAATCTTGTTCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACG-C
323 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
3287784 TAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAA
388 AAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCC-AAAACCCTTCCGAAAAAATTTTAA
** * * * *
3287849 AAAATCCCGAACCGCAAAAAGTTTCAAAAATAGTGAAAAGTAAAAAACAAGTCGTCTTGCCATGA
452 AAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTCCCATGA
* *
3287914 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTCGCAT
517 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* *
3287979 GCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATGGATCCACGGCTTGCACATCCCG
582 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCG
* *
3288044 TCTCTCTGGCCGACGTAGTGCCCGCCCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACA
647 TCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCACTCGTTTCGTCGGTTGGCTTAGGCATACG
* * *
3288105 GAGTTCATTCCCAGTCTAAGAT-TGAACCAGACTGAGGGT---T-GC-----A-GCAGCACGTAG
712 GAGTTCATTCCCAGTCTAAGATCAG-ACCGGACAGAGGGTGCATAGCAAGATAGGCAGCACGTAG
* * * *
3288159 AGGGGGAC-CTGGCCGATCGCCGGCTTGCGCATCCCGTTCCTCTGGTCGGCTGAGTGCCTGCACG
776 AGGGGGACTC-GGCCGATC-CCGGCTTGCGCAT-CCG-CCCTCTGGCCGACTGAGTGCCCGCACG
* * *
3288223 CTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCGCAGTCTAAGAATAC
837 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATAT
*
3288277 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCACATGATGGGCTCGGG
1 GGAGTTCATTCCCAG-CTAAGATCAGACCAGA-CGAGGGTTACGGTAGCACATGCTGGGCTCGGG
* * *
3288342 CATGTGCTGGTGCCGCATTTTTCTTCATCGGGG-----CA-C---CATCGTCAGAGAACCTGATC
64 CATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCCCATCACCGAGCATCGTCGGAGAACCTGACC
*
3288398 GACGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGTGTGCTCACATGATGTGCGATGGGTG
129 GACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
3288461 CTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTTA
194 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
3288526 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATAGGGACACT
259 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * *
3288591 TTTTTCAAATTGTCACAAAATCTTGCACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGTC-
324 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * * *
3288655 AACAGAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAA
389 AAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAC-CCTTCCGAAAAAATTTTAAA
** * *
3288720 AAATCCTAAACCGCAAAAAGTTTTTAAAATCGTGAAAAATAGAAAACGAGTCGTC-TCGCCATGA
453 AAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTC-CCATGA
* *
3288784 AACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTAC
517 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
*
3288849 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCACAT-CCG
582 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCG
** * *
3288913 TCTCTCTGGCCGGTGTCGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACG
647 TCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCACTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * *
3288978 GAGTTCATTCCCAATCTAAGATTAGACCGGACCA-AGGGTTGCAATAGCAAGATCGACAGCACGT
712 GAGTTCATTCCCAGTCTAAGATCAGACCGGA-CAGAGGG-TGC-ATAGCAAGATAGGCAGCACGT
* * * *
3289042 AGAGGGGGACTCGACCGATCCCCGGCTTGTGCATTCCGCCCCTCTGACC-AGCTGAGCGCCCGCA
774 AGAGGGGGACTCGGCCGAT-CCCGGCTTGCGCA-TCCG-CCCTCTGGCCGA-CTGAGTGCCCGCA
* * * *
3289106 CGCCCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCGGTCTAAGCATAT
835 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATAT
*
3289162 GGAGTTCATTCCCAGCCTAAGATCAGACCAGACTGAGGGTTACGGTAGCATATGCTGGGCTCGGG
1 GGAGTTCATTCCCAG-CTAAGATCAGACCAGAC-GAGGGTTACGGTAGCACATGCTGGGCTCGGG
* * * *
3289227 CATGTGCTAGTGCTGTATTTTTCTTCTTCGGGGCACCATCACCGAAGCATCGTCGGGGAACCTGA
64 CATGTGCTGGTGCCGTATTTTTCTTCATCGGGGC-CCATCACCG-AGCATCGTCGGAGAACCTGA
* ** * *
3289292 CCGGCGGCATTGGGGTTTTGGCGATCGGGGGGGCCGGGGGGGCTGTGCGCATATGAT-TGCGATG
127 CCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGG-TGTGCGCACATGATGTGCGATG
* **
3289356 GGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCC
190 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
3289421 CTTAAAGAGCATATGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTTTGAAATGGGGA
255 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
3289486 CACTTTTTTCAAATGGTCACAAAATATTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAT
320 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
*
3289551 GCCAAAAAAAAATACAAGGATCACATCTACCAACTTTGGGGCCAAAAACCCTTCCGAAAAAA-TT
385 GCCAAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCC-AAAACCCTTCCGAAAAAATTT
*
3289615 TAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTCCCA
449 TAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTCCCA
* * *
3289680 TGAAGCTCCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGG
514 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
3289745 CCCGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
579 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATC
* * * *
3289810 TCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCATCCACTCATTTCGTCGGTTGGCTTAGGCAT
644 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCACTCGTTTCGTCGGTTGGCTTAGGCAT
* *
3289875 ACGGAGTTCATTCCCAGTATAAGATCAGACCGGAAAGAGGGTAGCGATAGCAAGATAGGCAGCAC
709 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGT-GC-ATAGCAAGATAGGCAGCAC
3289940 GTAGAGGGGGACTCGGCCGATCCTCGGCTTGCGCATCCTGCCCTTCTGGCCGACTGAGTGCCCGC
772 GTAGAGGGGGACTCGGCCGATCC-CGGCTTGCGCATCC-GCCC-TCTGGCCGACTGAGTGCCCGC
* *
3290005 ACGCTC-TTTCGTGGGTTGACATAGGCATACGGAGTTCATTCTCAGTCTAAGAT-T
834 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAT
* **
3290059 -G-G---------A-C------CAGA-C---CGAGGGTTGCGCCAGCACATGCTGGGCTCGGGCA
1 GGAGTTCATTCCCAGCTAAGATCAGACCAGACGAGGGTTACGGTAGCACATGCTGGGCTCGGGCA
* * * * *
3290102 GGTGCTGGTGCCGTATTTTTCTTCGTCGTGGCGCCATCGCCGGAGCATCG-CCGATGAACCTGAC
66 TGTGCTGGTGCCGTATTTTTCTTCATCGGGGC-CCATCACC-GAGCATCGTCGGA-GAACCTGAC
* * * *
3290166 CGACGGCATTGGGGTTCCGACGATTGGAGGGGCCGGGTGGGTGTGCGCACATGATGTACGATGGA
128 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGG
* *
3290231 TGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCTCACCAAACCTCGAGAACTCACACCCCCT
192 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
3290296 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
257 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
3290361 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTATGCATGC
322 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
3290426 CAACAAAAAA-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTCCGAAAAAATTTT-A
387 CAAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACCCTTCCGAAAAAATTTTAA
* * * *
3290489 AAAATCTCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTTGTCTTGCCATGA
452 AAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTCCCATGA
*
3290554 AACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
517 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
** * * * **
3290619 ATAGAAATATGAAGATGTACCTAAACCCACCTACCACTCTATCGATCCACGGCTCGTGCATCCCG
582 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCG
* * * *
3290684 TGTCTCTGGCCGACGTAGTGCCTGCCCGCCCACCCGCTCGTTTCGTCGATTGGCTTAGGCATA-G
647 TCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCACTCGTTTCGTCGGTTGGCTTAGGCATACG
* * *
3290748 GAGTTCATTCCGAGTCTAAGATCGGACCGGACCGAGGGT
712 GAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGT
3290787 TGTGGCAGCA
Statistics
Matches: 2233, Mismatches: 220, Indels: 116
0.87 0.09 0.05
Matches are distributed among these distances:
869 33 0.01
870 468 0.21
871 260 0.12
872 174 0.08
873 371 0.17
874 5 0.00
877 1 0.00
878 5 0.00
879 2 0.00
884 2 0.00
885 193 0.09
886 4 0.00
891 2 0.00
892 1 0.00
895 1 0.00
896 38 0.02
897 9 0.00
898 2 0.00
899 431 0.19
900 225 0.10
901 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (889 bp):
GGAGTTCATTCCCAGCTAAGATCAGACCAGACGAGGGTTACGGTAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCGTATTTTTCTTCATCGGGGCCCATCACCGAGCATCGTCGGAGAACCTGACCGA
CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
AAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACCCTTCCGAAAAAATTTTAAAAAA
TCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTCCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTC
TCTGGCCGACGTAGTGCCCGCCCGCCCACCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTGCATAGCAAGATAGGCAGCACGTAGAGGGG
GACTCGGCCGATCCCGGCTTGCGCATCCGCCCTCTGGCCGACTGAGTGCCCGCACGCTCATTTCG
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAT
Found at i:3291415 original size:712 final size:712
Alignment explanation
Indices: 3290026--3291489 Score: 2303
Period size: 712 Copynumber: 2.1 Consensus size: 712
3290016 TGGGTTGACA
* *
3290026 TAGGCATACGGAGTTCATTCTCAGTCTAAGATTGGACCAGACCGAGGGTTGCGCCAGCACATGCT
1 TAGGCATACGGAGTTCATTC-CAGTCTAAGATCGGACCGGACCGAGGGTTGCGCCAGCACATGCT
* * *
3290091 GGGCTCGGGCAGGTGCTGGTGCCGTATTTTTCTTCGTCGTGGCGCCATCGCCGGAGCATCGCCGA
65 GGGCTCGGGCAGGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGA
*
3290156 TGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGAGGGGCCGGGTGGGTGTGCGCACATGAT
130 TGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGTGGGTGTGCGCACATGAT
3290221 GTACGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCTCACCAAACCTCGAGAACT
195 GTACGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCTCACCAAACCTCGAGAACT
* *
3290286 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
260 CACACCCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
3290351 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTT
325 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTT
* * *
3290416 TTATGCATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTCCGAAA
390 TTATGCATGCCAACAAAAAAACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCTCCCAAAA
* * ** **
3290481 AAATTTTAAAAATCTCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTTGTCT
455 AAATTTTAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGACGTCT
*
3290546 TGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATAAATTTACAAGCCATAAAAATGGC
* *
3290611 ATTGGCACATAGAAATATGAAGATGTACCTAAACCCACCTACCACTCTATCGATCCACGGCTCGT
585 ATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTCGT
* * *
3290676 GCATCCCGTGTCTCTGGCCGACGTAGTGCCTGCCCGCCCACCCGCTCGTTTCGTCGATTGGCT
650 GCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGATTGGCT
* *
3290739 TAGGCATA-GGAGTTCATTCCGAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCT
1 TAGGCATACGGAGTTCATTCC-AGTCTAAGATCGGACCGGACCGAGGGTTGCGCCAGCACATGCT
* * *
3290803 GGGCTCGGGCATGTGGTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGG
65 GGGCTCGGGCAGGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCG-CCG
* * * * *
3290868 A-GAACCTGACCGGCGGCGTTGGGGTTCC-AGTGATCGG-GGGGTCGGG-GGGTGTGCGCCCATG
129 ATGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGAGGGGCCGGGTGGGTGTGCGCACATG
* * * *
3290929 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
193 ATGTACGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCTCACCAAACCTCGAGAA
*
3290994 CTCACATCCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
258 CTCACACCCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
3291059 AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
323 AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTT
* * *
3291124 TGTTT-TGCATGGCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGG-CTAAACTCCTCCC
388 T-TTTATGCATGCCAACAAAAAAACAAGGATCACATCTACCAAGTTTGGGGCCAAAACT-CTCCC
** *
3291187 AAAAAAATTTTAAAAAAATCCCAAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
451 AAAAAAATTTT--AAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAG
*
3291252 ACGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAA
514 ACGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATAAATTTACAAGCCATAAA
** *
3291317 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
579 AATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
3291382 GCTTGTGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
644 GCTCGTGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGATT
3291447 GGCT
709 GGCT
*
3291451 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
1 TAGGCATACGGAGTTCATT-CCAGTCTAAGATCGGACCG
3291490 AATAGAAGGT
Statistics
Matches: 687, Mismatches: 55, Indels: 18
0.90 0.07 0.02
Matches are distributed among these distances:
709 6 0.01
710 257 0.37
711 13 0.02
712 372 0.54
713 37 0.05
714 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (712 bp):
TAGGCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGCCAGCACATGCTG
GGCTCGGGCAGGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGAT
GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGTGGGTGTGCGCACATGATG
TACGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCTCACCAAACCTCGAGAACTC
ACACCCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTT
TATGCATGCCAACAAAAAAACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCTCCCAAAAA
AATTTTAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGACGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATAAATTTACAAGCCATAAAAATGGCA
TTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTCGTG
CATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGATTGGCT
Found at i:3291649 original size:26 final size:26
Alignment explanation
Indices: 3291613--3291665 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3291603 GTTGACTTAG
3291613 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3291639 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3291665 G
1 G
3291666 ATCGAACTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3292864 original size:901 final size:897
Alignment explanation
Indices: 3290749--3293448 Score: 3955
Period size: 901 Copynumber: 3.0 Consensus size: 897
3290739 TAGGCATAGG
* * * * *
3290749 AGTTCATTCCGAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTATGGCAGCACATGCTAGGCTCGGGCA
* * *
3290814 TGTGGTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACC
66 TGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT-TCTGGAGCATCGTCGGAGAACCTGACC
* * * *
3290879 GGCGGCGTTGGGGTTCCAG-TGATCGGGGGGTCG-GGGGGTGTGCGCCCATGATGTGCGATGGGT
130 GGCGGCATTGGGGTT-CAGACGATCGGGGGGACGAGGGGGTGTGCGCACATGATGTGCGATGGGT
*
3290942 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACATCCCCTT
194 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
3291007 AAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
259 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
3291072 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTGTTT-TGCATGG
324 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTT-TTTGTGCATGC
* * *
3291136 CAACAAAAATACAAGGATCACATCTACCAAGTTTGGGG-CTAAACTCCTCCCAAAAAAATTTTAA
388 CAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCCCGAAAAAATTTT-A
* * *
3291200 AAAAATCCCAAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGACGTCTTGCCATG
451 AAAAATCCCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
3291265 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGCA
516 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*
3291330 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCC
581 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
3291395 GTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCC--CGCTCGTTTCGTCGGTTGGCTTAGGCAT
646 GTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCTGCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * *
3291458 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATAGAAGGTTGCGGGAGTAGGAT-TAGCAGCA
711 ACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACAGAGGGTTGCGGCAGTAGGATCGA-CAGCA
*** * * *
3291522 TATAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAACACCCG
774 CGCAGAGGGGGACCC-GACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCACCCG
* *
3291587 CACGCTCGTTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
838 CACGCTCGTTTAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
* * *
3291647 AGTTCATTCCCAGTCTAAGATC-GAACTGAACTGAGGGTTTTGGCAGCACATGCTAGGCTCGGGC
1 AGTTCATTCCCAGTCTAAGATCGGACCAG-ACTGAGGGTTATGGCAGCACATGCTAGGCTCGGGC
* *
3291711 ATGTGTTGGTGCCATATTTTTCTTCATCGGGGCACCA-TCATCGGAGCATCGTCGGAGAACCTGA
65 ATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATTC-T-GGAGCATCGTCGGAGAACCTGA
* * * *
3291775 CCGGCGGCATT-GGGTTCCGACGATCAGGGGGCCGAGGGGGTGTGCGGACATGATGTGCGATGGG
128 CCGGCGGCATTGGGGTTCAGACGATCGGGGGGACGAGGGGGTGTGCGCACATGATGTGCGATGGG
* *
3291839 TGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
193 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
3291904 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
258 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
3291969 CTTTTTTCAAATGGTCACAAAAATCTTGTACACTTCGAGCTTTTAGCTGAATTTTTTTGTGCATG
323 CTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG
3292034 CCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCCCGAAAAAATTTTAA
387 CCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCCCGAAAAAATTTTAA
* * * * ** *
3292099 AAAATCCTGAACCGTAGAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
452 AAAATCCCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
3292164 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAGAATGGCATTGGCAC
517 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
** * ** *
3292229 ATAGAAATATGAAGATGTGCCTAAACCCACCTACCAGCCTATCGATTTACGGCTTGCGCATCCTG
582 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * *
3292294 TCTCTCTGGCCGGTGTAGTGCCTGCCCGCCCGCCTGTCTGCTCATTTCGTCGGTTGGCTTAGGAA
647 TCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCTG-C-GCTCGTTTCGTCGGTTGGCTTAGGCA
* ** * *
3292359 TACGGAGTTCATTCCCAGTCTAAGATTAGATCGGAGGGAGGGTTGTGGCAGCAGGATCGACAGCA
710 TACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACAGAGGGTTGCGGCAGTAGGATCGACAGCA
* *
3292424 CGCAGAGGGGGACCCGACCATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGCACCCGC
774 CGCAGAGGGGGACCCGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCACCCGC
* * * * *
3292489 ACGTTCGTTTCGCGGGTTGACTTAGGCATACGGACTTCATTCCTAGTCTAAGCATACGA
839 ACGCTCGTTTAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
* * * **
3292548 AGTTCATTCCCAGTC-AAAATCGGACCAGACTGAGGGTTACGGCAGCACATGCTAGCCTCAAGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTATGGCAGCACATGCTAGGCTCGGGCA
* * *
3292612 TGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCTAGAGCATCGTCGGAGAACCTGACT
66 TGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATT-CTGGAGCATCGTCGGAGAACCTGACC
* * *
3292677 GGCGGCATTGGGGCTCAGACGATCGGGGGGACGAGGGGGTGTGCGCACATGATGGGAGATGGGTG
130 GGCGGCATTGGGGTTCAGACGATCGGGGGGACGAGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
3292742 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTCGAGAACTCACACCCCCTTA
195 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
3292807 AAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
260 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
3292872 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCACGCCG
325 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-
* * *** * *
3292937 AAAAAAGTAAAAGGATTGTGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTCAAAA
389 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCCCGAAAAAATTTTAAAA
* *
3293002 AATCCCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCCTGAAG
454 AATCCCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
3293067 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
519 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
3293132 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
584 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * * *
3293197 ACTCTTGCCGGCATAGTGCCCGCCCGCCCGCTTGCCCACTCGTTTTGTCGATTGGCTTAGGCATA
649 TCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCTG--CGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * *
3293262 CGGTGTTCATTACCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGTAGTAGGATCGATAGCACG
712 CGGAGTTCATTCCCAGTCTAAGATCAGAC-GGACAGAGGGTTGCGGCAGTAGGATCGACAGCACG
** * ** * * * * *
3293327 CAGAGATGGACTCGACTGATCCTTGGCATGCGCATCCCACCCCTCTGGTCGACTAAGCACCCACA
776 CAGAGGGGGACCCGAC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCACCCGCA
* * *
3293392 CGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATACG
840 CGCTCGTTTAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
3293449 GTATTGGTGC
Statistics
Matches: 1611, Mismatches: 170, Indels: 38
0.89 0.09 0.02
Matches are distributed among these distances:
896 3 0.00
897 20 0.01
898 534 0.33
899 65 0.04
900 146 0.09
901 662 0.41
902 180 0.11
903 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (897 bp):
AGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTATGGCAGCACATGCTAGGCTCGGGCA
TGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATTCTGGAGCATCGTCGGAGAACCTGACCG
GCGGCATTGGGGTTCAGACGATCGGGGGGACGAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCCCGAAAAAATTTTAAAAAA
TCCCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTAGCCGGCGTAGTGCCCGCCCGCCCGCCTGCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACGGACAGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGAG
GGGGACCCGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCACCCGCACGCTCG
TTTAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
Found at i:3294921 original size:26 final size:26
Alignment explanation
Indices: 3294885--3294934 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
3294875 GACTTAGGCA
3294885 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGGAGTTCATTCCCAGTCTAAGCT
3294911 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
3294935 ATAAGATCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:3295816 original size:26 final size:26
Alignment explanation
Indices: 3295780--3295832 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3295770 GTTGACTTAG
*
3295780 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3295806 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3295832 G
1 G
3295833 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3296459 original size:899 final size:896
Alignment explanation
Indices: 3294043--3297416 Score: 4788
Period size: 901 Copynumber: 3.8 Consensus size: 896
3294033 TCTCGGATCG
* *
3294043 GACCGAGGGTTACGGCAGCACATGCTGGTCTCGGGCATGTGTTGGTGCCACATTTTTCTTCACCG
1 GACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCATCG
* * * * *
3294108 GGGCACCATTACTGGAGCATCGTCGGAGAACCTGACCGACGACATTGGGGTTCCGATGATC-GGG
66 GGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
* * *
3294172 GGGTC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCAGTTACTTGGCCCTTATATTGGCCCC
131 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
3294236 CTATCCCTCATCAAACCTC-AGGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTT
196 CTATCCCTCATCAAACCTCGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
3294300 GCTGCCAGTAGCGATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGT
260 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
3294365 ACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAACACAAGGATCACGGT-TAC
325 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC-GTCTAC
*
3294429 CAAGTTTGGGTCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
389 CAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
* *
3294494 AAATTATGAAAAATAGAAAACGAGTCATCTGGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
454 AAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * *
3294559 TTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAAAC
519 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
* *
3294624 CACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCC
584 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC--CGC
* ** *
3294689 ATCCGCCCGCCCGCTCATTTCGTC-GATGTTTTAGGCATATGGAGTTCATTCCCAGTCTAAGATC
647 --CCGCCC-CCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
3294753 GGACCGGA-TCGAGGGTTGAGGTAGTAGGATCGGCAGCACATAGAGGGGGACCTAGCCGAT-CCT
709 AGACCGGACT-GAGGGTTGTGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCTCGCCGATCCCT
* * * *
3294816 CGGCTTCCGTATCCCGCCCCTCTAGCCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTA
773 -GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTA
*
3294881 GGCATACGGAGTTCATTCCCAGTCTAAGCTTACGGAGTTCATTCCCAGTCTAAGATAAGATCA
837 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT--GA-CA
** * * *
3294944 GATTGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGTTGGTGCCACATTTTTCTTCGTCG
1 GACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCATCG
** * * * * *
3295009 GGGCACCATCGTCGGAGCATCGCCGGATAACCTGACCAGCGGCATTGGGGTTCCGGCGATCGGTG
66 GGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
** * * * *
3295074 GGG-TTGGGGGGTGTGCGCACATGATGTCCGAGGGGTGCTGGTACTTGGCCCATATATTGTCCCC
131 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
3295138 CTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAAGAGCATTTTAGATTTTATAGGTTTG
196 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
3295202 CTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
261 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * *
3295267 CACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACATCTACCA
326 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
** * * **
3295332 AGTTTGGGGCCAAAACTGATTTCGAAAAAATTGTT-ACAAATCCCGAACCGTAAAAAGTTTTGAA
391 AGTTTGGGGCCAAAACTCCTTTCAAAAAAATT-TTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
* * *
3295396 AATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
455 AATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
3295461 TGTATGAATTTACAAGCCATAAAAATGGTATTGGCACACAGAAATATGAAGATGTGCCTAAACCC
520 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
* *
3295526 ACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCG
585 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
*
3295591 CCCCTCCGCTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
650 CCCC-CCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * *
3295656 GGACTGAGTGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCCGCCGATCCCTGGCTTG
714 GGACTGAGGGTTGTGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCTCGCCGATCCCTGGCTTG
**
3295721 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCAACACGCTCGTTTCGTGGGTTGACTTAGGCATAC
779 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
3295786 GGAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
844 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT--GA-CA
* *
3295842 GACCGAGGGTTACGGCAGCACATGCTGGGCTGGGGCATGTGTTGGTGCCGA-ATTTTTCTTCGTC
1 GACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCC-ACATTTTTCTTCATC
* * *
3295906 -GGGCACCATCACCGGAGCATCGTCGGAGAACCTAACCGGCAGCATTGGGGTTCTGACGATCGGG
65 GGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG
* * *
3295970 GGGGCCGGGGGTGGTTTGCGCACATGATGGGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
130 GGGGCCGGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
3296035 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
194 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
3296100 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
259 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * *
3296165 TACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTGTAC
324 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * * * *
3296230 CAAGCTTGGGG-CAAAACTCC-TTCTGAAAAAATTTTAACAAATCCTGACCCGTAAATAGTTTCA
389 CAAGTTTGGGGCCAAAACTCCTTTC-AAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
* *
3296293 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACCTGAAGGCTTAAGGGACC
453 AAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
3296358 ATTGTATGAATTTACAAGCCATAAAAATGGTATTGGAACGCAGAAATATGAAGATGTGCCTAAAC
518 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
* *
3296423 CCACCTACCACCCTATCGATCCACGACTTACGCATCCCGTCTCTCTGGCCGGCGTAGT----GCC
583 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
3296484 CG---CCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
648 CGCCCCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * *
3296546 CGGACCGAGGGTTTTGGTAGCTGGATCGACAGCGCGTAGAGCGGGA-CTCGACCGATCCCTGGTT
713 CGGACTGAGGGTTGTGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCTCG-CCGATCCCTGGCT
* * * * * *
3296610 TGCGCATCCCACCCGTCTGGTCGGCTGAGCACCCGCACGTTCATTTCGTAGGTTGACTTAGGCAT
777 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
3296675 ACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A--C-----TG--A
842 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATGACA
* ** * * * * ** *
3296708 -ACCGAGGGTTGCTACAGCACGTGCTAGGCTCGAGCATGTGTTGGTGTCGTATTTTTCTTCATCA
1 GACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCATCG
* *
3296772 GGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGG
66 GGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
* * *
3296837 GGGCCGGGGGTGTGCGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
131 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
3296902 CTATCCCTCATCAAACC-CTGAGAACTCACACCCCCTTAAAGCGCATTTGAGATTTTACAGGTTT
196 CTATCCCTCATCAAACCTC-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
3296966 GCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
260 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
3297031 ACTCTTCGATTTTTTAGCTGAATTTTTTTGTCCATGCCAACAAAAATACAAGGATCACGTCTACC
325 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * *
3297096 AAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATACCGAACCGTAAAAAGTTTCAAA
390 AAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
* * * *
3297161 AATCATTAAAAATAGAAAATGAGTCGTCTTGCCATGAGACTTCACGTGAAGGCTTAAGGGACCAT
455 AATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
3297226 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGCGCCTAAACCC
520 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
* *
3297291 ACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCTGCCCG
585 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* * *
3297356 CCTGCCCGTCCAATCGTTTCGTCGGTTGGCCTAGGCATACGGAGTTCATTCCCAGTCTAAG
650 CC-CCCCG--C--TCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
3297417 CATATGGAGT
Statistics
Matches: 2235, Mismatches: 205, Indels: 89
0.88 0.08 0.04
Matches are distributed among these distances:
864 1 0.00
865 294 0.13
866 287 0.13
867 2 0.00
869 1 0.00
870 5 0.00
871 1 0.00
874 4 0.00
876 2 0.00
878 47 0.02
887 1 0.00
888 1 0.00
889 1 0.00
890 5 0.00
891 187 0.08
892 1 0.00
895 5 0.00
896 1 0.00
897 77 0.03
898 268 0.12
899 301 0.13
900 166 0.07
901 488 0.22
902 88 0.04
903 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
GACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCATCG
GGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
ATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
CCCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
ACTGAGGGTTGTGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCTCGCCGATCCCTGGCTTGCG
CATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATGACA
Found at i:3297426 original size:26 final size:26
Alignment explanation
Indices: 3297390--3297442 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3297380 GTTGGCCTAG
3297390 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* * *
3297416 GCATATGGAGTTGATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3297442 G
1 G
3297443 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3298123 original size:745 final size:745
Alignment explanation
Indices: 3296671--3298161 Score: 2294
Period size: 745 Copynumber: 2.0 Consensus size: 745
3296661 GTTGACTTAG
* * * *
3296671 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTGCTACAGCACGTGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGACAGCACATGCTAGG
* * * **
3296736 CTCGAGCATGTGTTGGTGTCGTATTTTTCTTCATCAGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGAGCATGTGTTGGTGCCGCATTTTTCCTCATCAGGGCACCATCGCCGGAGCATCACCGGAGA
* ** *
3296801 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGTGTGCGCGCACATGATGTA
131 ACCTGACCGGCAGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGGTGCGCGCACATGATGTA
3296866 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCCTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCCTGAGAACTCAC
*
3296931 ACCCCCTTAAAGCGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
* * *
3296996 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACTCTTCGATTTTTTAGCTGAATTTTTTTG
326 GAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** *
3297061 TCCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAA
391 TCCATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAAATAATTACAAAAAA
* * *
3297126 ATTTTAAAAAATACCGAACCGTAAAAAGTTTCAAAAATCATTAAAAATAGAAAATGAGTCGTCTT
456 ATTTTAAAAAATACCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
3297191 GCCATGAGACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
521 GCCATGAAACTTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** *
3297256 TTGGCATGCAGAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
586 TTGGCACACAGAAATATGAAAATGCGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
3297321 CATCTCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCTGCCCGTCCAATCGTTTCGTCGGTTGGC
651 CATCCCATCTCTCTGGCCGGCGCAGTGCCCGCCCGCCCGCCCGTCCAATCCTTTCGTCGGTTGGC
3297386 CTAGGCATACGGAGTTCATTCCCAGTCTAA
716 CTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
3297416 GCATATGGAGTTGATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCT-GT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGACAGCACATGCTAG-
* * **
3297480 GCTCGGGCATGTGTTGGTGCCGCATTTTTCCTCGTTGGGGCACCATCGCCGGAGCATCACCGGAG
65 GCTCGAGCATGTGTTGGTGCCGCATTTTTCCTCATCAGGGCACCATCGCCGGAGCATCACCGGAG
**
3297545 AACCTGACCGGCAGCATTGGGGTTCCAACGATC-GGGGGGCCAGGGGGGGTTTGCGCACATGATG
130 AACCTGACCGGCAGCATTGGGGTTCCAACGATCGGGGGGGCC-GGGGGGGTGCGCGCACATGATG
3297609 TACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CCTCGAGAACT
194 TACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCCT-GAGAACT
* *
3297673 CACACCCCCTTAAAGAGCA-TTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGA
3297737 AATGAGGACACTTTTTTCAAA-GCGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
323 AATGAGGACACTTTTTTCAAATG-GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * **
3297801 TTTGTGCATGCCAACAAAATATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTAATTATG
387 TTTGTCCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAAATAATTACA
* ** *
3297866 AAAAAATTTTAAAAAAT-CCTAACTCGCAAAAAGTTTCTGAAATCGTGAAAAATAGAAAACGAGT
451 AAAAAATTTTAAAAAATACCGAAC-CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
*
3297930 CGTCTTGCCATGAAACTTCACGGGAAGGCTTAAGGGACGATTGTATGAATTTACAAGCCATAAAA
515 CGTCTTGCCATGAAACTTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
3297995 ATGGCGTTGGCACACAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
580 ATGGCATTGGCACACAGAAATATGAAAATGCGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * **
3298060 CTTGCGCATCCCATCTCTCTGGCTGGCGCAGTGCCCGCCTGCCCGCCCG-CCTGCTCCTTTCGTC
645 CTTGCGCATCCCATCTCTCTGGCCGGCGCAGTGCCCGCCCGCCCGCCCGTCC-AATCCTTTCGTC
* *
3298124 TGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
709 GGTTGGCCTAGGCATACGGAGTTCATTCCCAGTCTAA
3298161 G
1 G
3298162 ATCATACTGG
Statistics
Matches: 675, Mismatches: 64, Indels: 14
0.90 0.08 0.02
Matches are distributed among these distances:
743 1 0.00
744 139 0.21
745 535 0.79
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (745 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGACAGCACATGCTAGG
CTCGAGCATGTGTTGGTGCCGCATTTTTCCTCATCAGGGCACCATCGCCGGAGCATCACCGGAGA
ACCTGACCGGCAGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGGTGCGCGCACATGATGTA
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCCTGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
GAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TCCATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAAATAATTACAAAAAA
ATTTTAAAAAATACCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACACAGAAATATGAAAATGCGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCATCTCTCTGGCCGGCGCAGTGCCCGCCCGCCCGCCCGTCCAATCCTTTCGTCGGTTGGC
CTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:3298323 original size:26 final size:26
Alignment explanation
Indices: 3298294--3298346 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3298284 GTTTACTTAG
* ** *
3298294 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACAGAGTTAATTCCAAGTCTAA
3298320 GCATACAGAGTTAATTCCAAGTCTAA
1 GCATACAGAGTTAATTCCAAGTCTAA
3298346 G
1 G
3298347 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCAAGTCTAA
Found at i:3298967 original size:26 final size:26
Alignment explanation
Indices: 3298927--3298976 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
3298917 GACTTAGGCA
3298927 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGGAGTTCATTCCCAGTCTAAGCT
*
3298953 TACGGAGTTCTTTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
3298977 ATAAGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:3299345 original size:631 final size:631
Alignment explanation
Indices: 3298131--3299373 Score: 1830
Period size: 631 Copynumber: 2.0 Consensus size: 631
3298121 GTCTGTTGGC
* * *
3298131 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCATACTGGACTAAGGGTTGTCGTAGCAAGATC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCATACTGAACTAAGGGTTGACGCAGCAAGATC
* * * * *
3298196 GGCAGCACGTAGTGGAGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTTTGGTCGGCTGA
66 GGCAGCACGTAGCGGAGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGA
* * * *
3298261 GCACCCGTACGCTCATTTCGTGGGTTTACTTAGGCATACGGAGTTCCTTCCCAGTCTAAGCATAC
131 GCACCCGCACGCTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
** *
3298326 AGAGTTAATTCCAAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAG
196 AGAGTTAATTCCAAGTCTAAGATAAGACCGGACCGAGGGTTACGGCAGCAAATGCTGGGCTCGAG
*
3298391 CATGTGTTGGTGACGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGA
261 CATGTGTTGGTGACGCATTTTTCTTCACCGGGGCAACATCGCCGGAGCATCGCCGGAGAACCTGA
*
3298456 CCGACGGCATTGGGGTTCCAACGATCGGGGGGGCCGAGGGGTGTGCGCACATGATGTGCGATGGG
326 CCGACGGCATTGGGGTTCCAACGATCGGGGGGGCCGAGGGGTGTGCGCACATGATGTGCGAGGGG
* * * *
3298521 TGCAGTTACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCGGGAACTCACACCCCTT
391 TGCAGGTACTTGGCCCATATATTGGCCCCCTAACCCTCATCAAACCCCGAGAACTCACACCCCTT
*
3298586 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACAT
456 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * *
3298651 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATTTTTTTGTGCATGCC
521 TTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTAAGCTAAATATTTTTATGCATGCC
*
3298716 AACAAAAATACAAGGATCACGTCTACCCGCTCGTTTCGTCGATGTT
586 AACAAAAATACAAGGATCACATCTACCCGCTCGTTTCGTCGATGTT
* * *
3298762 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACTGAAC-GAGGGTTGAGGCAGCAGGAT
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-ATACTGAACTAAGGGTTGACGCAGCAAGAT
* * * *
3298825 CGGCAGCACGTAGACGG-GGACCTGGCCGATCCCCGGCTTTCGCATCCCGCCCCTCTAGCCGGTT
65 CGGCAGCACGTAG-CGGAGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCT
* *
3298889 GAGCACCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTT
129 GAGCACCCGCACGCTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* ** * ** *
3298954 ACGGAGTTCTTTCCCAGTCTAAGATAAGACCGGATTGAGGGTTGCGGTCAGCAAATGCTGGGCTC
194 ACAGAGTTAATTCCAAGTCTAAGATAAGACCGGACCGAGGGTTACGG-CAGCAAATGCTGGGCTC
* ** * * * *
3299019 GGGCATGTGTTGGTG-CTGCATTTTTCTTCGTCGGGGCAACGTTGTCGGAGCATCGCCGGATAAC
258 GAGCATGTGTTGGTGAC-GCATTTTTCTTCACCGGGGCAACATCGCCGGAGCATCGCCGGAGAAC
* * ** *
3299083 CTGACC-AGCGGCATTGGGGTTCCGACGATCGGTGGGGTTGGGGGGTGTGCGCACATGATGTGCG
322 CTGACCGA-CGGCATTGGGGTTCCAACGATCGGGGGGGCCGAGGGGTGTGCGCACATGATGTGCG
* * *
3299147 AGGGGTGCTGGTACTTGGCCCATATATTGTCCCCCTATCCCTCATCAAACCCCGAGAACTCACAC
386 AGGGGTGCAGGTACTTGGCCCATATATTGGCCCCCTAACCCTCATCAAACCCCGAGAACTCACAC
* * * *
3299212 CCCTTAAAGAGCATTTTAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGGAATGGG
451 CCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGG
* *
3299277 GACACTTTTTTCAAATGATCACAAAATCTTGTACACTTGGAGTTTTTAGCTAAATATTTTTATGC
516 GACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTAAGCTAAATATTTTTATGC
3299342 ATGCCAACAAAAATACAAGGATCACATCTACC
581 ATGCCAACAAAAATACAAGGATCACATCTACC
3299374 AAGTTTGGGG
Statistics
Matches: 543, Mismatches: 64, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
630 166 0.31
631 376 0.69
632 1 0.00
ACGTcount: A:0.23, C:0.25, G:0.26, T:0.26
Consensus pattern (631 bp):
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCATACTGAACTAAGGGTTGACGCAGCAAGATC
GGCAGCACGTAGCGGAGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGA
GCACCCGCACGCTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
AGAGTTAATTCCAAGTCTAAGATAAGACCGGACCGAGGGTTACGGCAGCAAATGCTGGGCTCGAG
CATGTGTTGGTGACGCATTTTTCTTCACCGGGGCAACATCGCCGGAGCATCGCCGGAGAACCTGA
CCGACGGCATTGGGGTTCCAACGATCGGGGGGGCCGAGGGGTGTGCGCACATGATGTGCGAGGGG
TGCAGGTACTTGGCCCATATATTGGCCCCCTAACCCTCATCAAACCCCGAGAACTCACACCCCTT
AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTAAGCTAAATATTTTTATGCATGCC
AACAAAAATACAAGGATCACATCTACCCGCTCGTTTCGTCGATGTT
Found at i:3299856 original size:26 final size:26
Alignment explanation
Indices: 3299820--3299870 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
3299810 TGACTTAGAA
* *
3299820 ATACGGAGTTCATTCCTAGTCTAAGC
1 ATACCGAGTTCATTCCCAGTCTAAGC
3299846 ATACCGAGTTCATTCCCAGTCTAAG
1 ATACCGAGTTCATTCCCAGTCTAAG
3299871 ATCAAACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACCGAGTTCATTCCCAGTCTAAGC
Found at i:3301649 original size:26 final size:26
Alignment explanation
Indices: 3301607--3301659 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3301597 GTTGACTTAG
* *
3301607 GCATACGGAATTCATTCCTAGTCTAA
1 GCATACGGAATTAATTCCCAGTCTAA
*
3301633 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAATTAATTCCCAGTCTAA
3301659 G
1 G
3301660 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTAATTCCCAGTCTAA
Found at i:3302253 original size:897 final size:894
Alignment explanation
Indices: 3298741--3303306 Score: 6327
Period size: 895 Copynumber: 5.1 Consensus size: 894
3298731 ATCACGTCTA
** * * * *
3298741 CCCGCTCGTTTCGTCGA-TGTTTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCGAACTGAA
1 CCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACCAG-A
* * * * * * *
3298804 C-GAGGGTTGAGGCAGCAGGATCGGCAGCACGTAGACGGGGACCTGGCCGATCCCCGGCTTTCGC
65 CTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGC
*
3298868 ATCCCGCCCCTCTAGCCGGTTGAGCACCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGA
130 ATCCCGCCCCTCTAGCCGGTTGAGCACCCGCACGCTCGTTTTGTGAGTTGACTTAGGCATACGGA
* * * * * **
3298933 GTTCATTCCCAGTCTAAGCTTACGGAGTTCTTTCCCAGTCTAAGATAAGACCGGATTGAGGGTTG
195 GTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
* * * * * * *
3298998 CGGTCAGCAAATGCTGGGCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCAACGTTG
260 C-GACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCG
* * * * * *
3299063 TCGGAGCATCGCCGGATAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGTGGGGTTGGGGGG
324 CCAGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGG
* * * *
3299128 TGTGCGCACATGATGTGCGAGGGGTGCTGGTACTTGGCCCATATATTGTCCCCCTATCCCTCATC
389 TGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
3299193 AAACCCCGAGAACTCACA-CCCCTTAAAGAGCATTTTAGATTTTATAGGTTTGCTGCCAGTAGCC
454 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * *
3299257 ATTAAGGTGTCTGGAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTGGAGTTT
519 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * *
3299322 TTAGCTAAATATTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCA
584 TTAGCTGAAT-TTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * ** *
3299387 AAACTCATTTCGAAAAAATTGTT-ACAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAA
648 AAACTCCTTCCGAAAAAATT-TTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAA
* * *
3299451 TAGAAAACGAGTTGTCTAGCCATGAAACGTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
712 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
3299516 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
777 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
*
3299581 ATCGATCCACGGCTTGCGCAACCCGTCTCTCTGACCGGCGTAGTGCCCGCCCG
842 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGACCGGCGTAGTGCCCGCCCG
3299634 CCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACCAGA-
1 CCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACCAGAC
* *
3299698 TCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTTGATCCCCGGCTTGCGC
66 T-GAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGC
* * **
3299763 ATCCCGCCCCTCTAGCCGGCTGAGCACCCGCACTCTCGTTTATG-G-GTTGACTTAGAAATACGG
130 ATCCCGCCCCTCTAGCCGGTTGAGCACCCGCACGCTCGTTT-TGTGAGTTGACTTAGGCATACGG
* * * *
3299826 AGTTCATTCCTAGTCTAAGCATACCGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGATA
194 AGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * *
3299891 GCGGCAGCACATTCTGGGCTCGAGCATGTGTTGGTGCTGCATTTTTCTTCGCCTGGGCACCATCG
259 GCGACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCG
* * * * * * *
3299956 CCAGAGCATTGCCAGAGAGCCTAACCGGTGGCGTTGGGGTTCCGACGATC-GGGGGGCCGGGGGG
324 CCAGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGG
* * * * *
3300020 AGTGTGCACATGATGTATGATGGGTGCTGGTAATTGGCCCTTATATTGGCCCTCTATCCCTCATC
389 TGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
3300085 AAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCT
454 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
3300150 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAGGGTCACAAAATCATGTACACTTCGACTTT
519 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * *
3300215 TTAGCTGAATTTTTTTTGCACGCCAAAAAAAAATACAAAGATCACGTCTACCAGGTTTGGGTCCA
584 TTAGCTGAATTTTTTTTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * *
3300280 AAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAAT
648 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAAT
* *
3300345 AGAAAATGAGTCGTCTTGCCATGAAAATTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
713 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
3300410 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
778 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
*
3300475 TCGATCCACGGCTTGCGCAACCCGTCTCTCTGACCGGCGTAGTGCCCGCCCG
843 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGACCGGCGTAGTGCCCGCCCG
* * *
3300527 CCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTGATTCCTAATCTAAGATTAGACCAGAT
1 CCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACCAGAC
* *
3300592 TGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTTGACCCCCGGCTTGCGCA
66 TGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCA
* * ** *
3300657 TCCCGCCCCTCTAGCCGGTTGAGCACCCGCACTCTCGTTTTGTGGGTTGACTTAGAAATACGAAG
131 TCCCGCCCCTCTAGCCGGTTGAGCACCCGCACGCTCGTTTTGTGAGTTGACTTAGGCATACGGAG
* * * * *
3300722 TTCATTCCTAGTCTAAGCATACCGAGTTCATTCCTAGTCTAAGATC-GAACCAAACCGAGGATAG
196 TTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTG
* * *
3300786 CGGCAGCACATTCTGGGCTCGAGCATGTGTTGGTGCTGCATTTTTCTTCGCCTGGGCACCATCGC
260 CGACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCGC
* * * * * * * *
3300851 CAGAGCATTGCCAGAGAGCCTAACCGGTGGCGTTGGGGTTCCGATGATCGGGGGGGTCGGGGGGA
325 CAGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGT
* * * *
3300916 GTGTGCACATGATGTATGATGGGTGCTGGTAATTGGCCCTTATATTGGCCCTCTATCCCTCATCA
390 GTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * *
3300981 AACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCTA
455 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
3301046 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAGGGTCACAAAATCATGTACACTTCGAGTTTT
520 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
*
3301111 TAGCTGAATTGTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCTAGCTTT-GGGCCA
585 TAGCTGAATT-TTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCA
* * * * * * *
3301175 AAATTCCTTACGAAAAGATTTAAAAAAATCCTGACCCGTAAAAATTTTTGAAAATTGTGAAAAAT
648 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAAT
* *
3301240 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAATGCTTCAGGGACCATTGTATGAATTTAC
713 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
3301305 AAGCCATGAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTA
778 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * *
3301370 TCGATCCACGGCTTGCGCATCCCATCTCTCGGGCCGACGTAGTGCCCGCCCG
843 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGACCGGCGTAGTGCCCGCCCG
* * * * *
3301422 CCCTCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATTGGACCAGAC
1 CCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACCAGAC
* * *
3301487 TGAGGGTTGCGGTAGCAAGG-TCGGCAACACGCAGAGGGGGACCCGGTCGATCCCCGACTTACGC
66 TGAGGGTTGCGGTAGC-AGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGC
* * * *
3301551 ATCCTGTCCCTCTGGTCGGTTGAGCACCCGCACGCTCGTTTTGTGAGTTGACTTAGGCATACGGA
130 ATCCCGCCCCTCTAGCCGGTTGAGCACCCGCACGCTCGTTTTGTGAGTTGACTTAGGCATACGGA
* * *
3301616 ATTCATTCCTAGTCTAAGCATACGGAGTTAATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
195 GTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
* * *
3301681 CGACAGCACATGCTGGGCTAGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGC
260 CGACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCGC
* * * *
3301746 CGGAGCATCACCGGAGAACCTGACCGGCGGTATTGGGGTTCCGACGATTGGGGGGGGTCGAGGGG
325 CAGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA-TCGGGGGGGTCG-GGGG
* *
3301811 GTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
388 GTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
3301876 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGC
453 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
3301941 CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTT
518 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * * *
3302006 TTTAGCTGAATTTTTTTGTACATGCCAAACAAAATACAAGGATCACGTCTAGCATGTTTGGGGCT
583 TTTAGCTGAATTTTTTT-TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * **
3302071 AAAACTCCTTCCGAAAAAATTTTCAAAAATCCCGAACTGTAAAAAGTTTCAAAAATTGTGAAAAA
647 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAA
3302136 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
712 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
*
3302201 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCT
777 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
3302266 ATCGATGCACGGCTTGCGCATCCTGTCTCTCT-AGCTGGTGTAGTGCCCGCCCACTCG
842 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGA-CCGGCGTAGTGCCCG--C-C-CG
* * *
3302323 CCCGCCCGTTCGTTTCATCGATTTGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACC
1 CCCG--C--TCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACC
* * * * *
3302388 -GAATTGAGGGTTGTGGTAGCAGGATCGGTAGCATGCAGAGGGGGACCCGGTCGATGCCCGGCTT
62 AG-ACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTT
* * * * *** * * *
3302452 GCACATCCCGCCACTCTGGCCGGCTGAGCGTTCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
126 GCGCATCCCGCCCCTCTAGCCGGTTGAGCACCCGCACGCTCGTTTTGTGAGTTGACTTAGGCATA
* * * *
3302517 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTAATTCCCAGTCTAAGATCAGACCAAACTGAGG
191 CGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* *** ** *
3302582 GTTGCGACAGCACATGCGGGGCTCGAGCATGTGCCAGTGCCACATTTTTCTTCGTCGGGGCACCA
256 GTTGCGACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCTGCATTTTTCTTCGCCGGGGCACCA
* ** * * *
3302647 TCGCCAGAGCGTCGTTGGAAAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGAG
321 TCGCCAGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTC--G
* * *
3302712 GGGGGCTGTGCGCAAATGATATGTGATGGGTGCTGGTACTTGGCCCTTATATAGGCCCCCTATCC
384 GGGGG-TGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
3302777 CTCATCAAACCTTGAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
448 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * * *
3302842 GTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGATTTT
513 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * **
3302907 GAGTTTTTAGCTGAATTTTTTTATGCATGCCAATAAAAATACAAGGATCATGTCTAAAAAAGTTT
578 GAGTTTTTAGCTGAATTTTTTT-TGCATGCCAAAAAAAATACAAGGATCACGTCT-ACCAAGTTT
** * * * * **
3302972 GAAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCCAATCGCAAAAAGTTTTGAAAATCAT
641 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATTGT
3303037 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
706 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * **
3303102 AATTTACAAGGCATAAAAATGGCATCGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
771 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
3303167 CACCCTATCAATCCACGGCTT-AGCATCCCGTCTCTCTGCCCGGTGTAGTGCCCGCCCAACCG
836 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGACCGGCGTAGTGCCCG--C--CCG
* * * * **
3303229 CCCACCCGCTCGTTTCGTCGGTTGGGTTAGCCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
1 ----CCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACC
* *
3303294 GGACCGAGGGTTG
62 AGACTGAGGGTTG
3303307 TGGCAGCACA
Statistics
Matches: 3302, Mismatches: 328, Indels: 73
0.89 0.09 0.02
Matches are distributed among these distances:
892 100 0.03
893 649 0.20
894 299 0.09
895 896 0.27
896 39 0.01
897 452 0.14
899 1 0.00
900 1 0.00
901 5 0.00
903 1 0.00
904 13 0.00
905 319 0.10
906 317 0.10
907 205 0.06
908 1 0.00
910 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (894 bp):
CCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACCAGAC
TGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCA
TCCCGCCCCTCTAGCCGGTTGAGCACCCGCACGCTCGTTTTGTGAGTTGACTTAGGCATACGGAG
TTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
GACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCGCC
AGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTG
TGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
AGCTGAATTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGA
AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
ATCCACGGCTTGCGCATCCCGTCTCTCTGACCGGCGTAGTGCCCGCCCG
Found at i:3302548 original size:26 final size:26
Alignment explanation
Indices: 3302512--3302564 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3302502 GTTGACTTAG
*
3302512 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
3302538 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
3302564 G
1 G
3302565 ATCAGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:3303918 original size:720 final size:717
Alignment explanation
Indices: 3302539--3304007 Score: 2073
Period size: 720 Copynumber: 2.0 Consensus size: 717
3302529 CCAGTCTAAG
* *
3302539 CATACGGAGTTAATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGACAGCACATGCGGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGCACATGCGGGGC
* ** * * ***
3302604 TCGAGCATGTGCCAGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCGTCGTTGGAAAA
66 TCGAGAATGTGCCAGTGCCACATTTTTCTTCACCGGGGCACCATCACCAGAGCATCGCCAGAAAA
* *
3302669 CCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGCTGTGCGCAAATGATAT
131 CCTGACCAGCGACATTGGGGTTCCGACGATCGGGGGGGACGAGGGGGGCTGTGCGCAAATGATAT
* * **
3302734 GTGATGGGTGCTGGTACTTGGCCCTTATATAGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
196 GCGATGGGTGCTGGTACTTGGCCCTTATATAGGCCCCCCATCCCTCATCAAACCTCAAGAACTCA
* *
3302799 CACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
261 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
3302864 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGATTTTGAGTTTTTAGCTGAATTTTTTT
326 TGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** *
3302929 ATGCATGCCAATAAAAATACAAGGATCATGTCTAAAAAAGTTTGAAGCCAAAACTCCTTCCAAAA
391 ATGCATGCCAAAAAAAATACAAGGATCACATCTAAAAAAGCTTGAAGCCAAAACTCCTTCCAAAA
* * *
3302994 AAATTTTAAAAAATCCCCAATCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
456 AAATTTAAAAAAATCCCCAACCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTC
* * *
3303059 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGG
521 TTGCCATGAAACGTCACGTGAAGGCTTAAAGGACCATTGCATGAATTTACAAGGCATAAAAATGG
* * *
3303124 CATCGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTA
586 CATCGGCACACAGAAATATAAAGATGTGCCTAAACCCACCCACCACCCCATCAATCCACGGCTTA
* * *
3303189 GCATCCCGTCTCTCTGCCCGGTGTAGTGCCCGCCCAACCGCCCACCCGCTCGTTTCGTCGGTTGG
651 GCATCCCGTCTCTCTGCCCGGCGCAGTGCCCG--C--CCGCCCACCCGCTCGTTTCGTCGATTGG
*
3303254 GTTAGC
712 CTTAGC
* ** * * *
3303260 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGCACATGCGGGGC
* ** ** * *
3303325 TCGGGAATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCAGAGAA
66 TCGAGAATGTGCCAGTGCCACATTTTTCTTCACCGGGGCACCATCACCAGAGCATCGCCAGAAAA
* * * * * * *
3303390 CCTGACCAGCGGCATTTGGGTTCTGACGATCGGGGTGGACG-GGGGGGGTGTGCGCACATGATGT
131 CCTGACCAGCGACATTGGGGTTCCGACGATCGGGGGGGACGAGGGGGGCTGTGCGCAAATGATAT
* * * *
3303454 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCTTCATCATACCTCAAGAACTCG
196 GCGATGGGTGCTGGTACTTGGCCCTTATATAGGCCCCCCATCCCTCATCAAACCTCAAGAACTCA
*
3303519 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCT-AAA
261 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
3303583 TTGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTT
326 -TGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** * ** *
3303648 TATGCATGCCAAAAAAAATACAAGGATCACATCT-AGCATGCTTGGGGCCAAAACTCCTTCCGAA
390 TATGCATGCCAAAAAAAATACAAGGATCACATCTAAAAAAGCTTGAAGCCAAAACTCCTTCCAAA
* * * * *
3303712 AAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTTGAAAGTGATGAAAAATAAAAAATGAGTCGT
455 AAAATTTAAAAAAATCCCCAACCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGT
*
3303777 CTTGCCATGAAGCGTCACGTGAAGGCTTAAAGGACCATTGCATGAATTTAC-AGGCCATAAAAAT
520 CTTGCCATGAAACGTCACGTGAAGGCTTAAAGGACCATTGCATGAATTTACAAGG-CATAAAAAT
* * * * *
3303841 GGCATTGGCACATAGAAATATAAAGATGTTCCTAACCCCACCCACCACCCCATCGATCCACGGCT
584 GGCATCGGCACACAGAAATATAAAGATGTGCCTAAACCCACCCACCACCCCATCAATCCACGGCT
* * *
3303906 TGCGCATCCCGTCTCTCTGGCCGGCGCAGTGCCCGCCCGCCCACCCGTTCGTTTCGTCGATTGGC
649 T-AGCATCCCGTCTCTCTGCCCGGCGCAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGATTGGC
*
3303971 TTAGG
713 TTAGC
3303976 CATACGGAGTTCATTCCCAGTCTAAGATCAGA
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGA
3304008 TCAGATTGAG
Statistics
Matches: 658, Mismatches: 87, Indels: 11
0.87 0.12 0.01
Matches are distributed among these distances:
716 61 0.09
718 4 0.01
719 197 0.30
720 254 0.39
721 142 0.22
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (717 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGCACATGCGGGGC
TCGAGAATGTGCCAGTGCCACATTTTTCTTCACCGGGGCACCATCACCAGAGCATCGCCAGAAAA
CCTGACCAGCGACATTGGGGTTCCGACGATCGGGGGGGACGAGGGGGGCTGTGCGCAAATGATAT
GCGATGGGTGCTGGTACTTGGCCCTTATATAGGCCCCCCATCCCTCATCAAACCTCAAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
ATGCATGCCAAAAAAAATACAAGGATCACATCTAAAAAAGCTTGAAGCCAAAACTCCTTCCAAAA
AAATTTAAAAAAATCCCCAACCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTC
TTGCCATGAAACGTCACGTGAAGGCTTAAAGGACCATTGCATGAATTTACAAGGCATAAAAATGG
CATCGGCACACAGAAATATAAAGATGTGCCTAAACCCACCCACCACCCCATCAATCCACGGCTTA
GCATCCCGTCTCTCTGCCCGGCGCAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGATTGGCTTA
GC
Found at i:3304163 original size:26 final size:26
Alignment explanation
Indices: 3304134--3304186 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3304124 GTTGACTTAG
**
3304134 GCATACAGAGTTTGTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
3304160 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3304186 G
1 G
3304187 ATTGAAACAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3307590 original size:864 final size:864
Alignment explanation
Indices: 3305484--3308745 Score: 4024
Period size: 864 Copynumber: 3.7 Consensus size: 864
3305474 GTTGGCTTAG
* * ** *
3305484 GCATACGGAGTTCATTCCCAGTCTATGATCGAATTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGAACCGGACAGAGGGTTGCGGCAGCACATGCTGGG
* * *
3305549 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * ** *
3305614 ACCTGACTGGCGGCATTTGGGGTTC---C-A--GCGA---TTGGGGGGTGTGCACACGTGATGTG
131 ACCTGACCGGCGGCA-TTGGGGTTCTGGCGATCGAGAGGCCGGGGGGGTGTGCACACATGATGTG
* * *
3305670 CGACGGGTGCTGGTACTTGGCCC-CTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAATTCA
195 CGATGGGTGCTGGTACTTGGCCCTC-ATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* * * *
3305734 CACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAGAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAA
3305799 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** *
3305864 GTGCATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGGATCCAAAACTCCTTC-CAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* *
3305928 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * *
3305993 TCCCATGAAACATCATGTGAAGGCTTAAGGGACCATTGTATGACTTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
3306058 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACGGCTTGC
584 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
3306123 GCATCCCGTCC-CTCTTGTCGGCGTAGTG--C-CC-G-CCG---GCTCGTTTTGTCGGTTGGCTT
649 GCATCCCG-CCTCTCTGGCCGGCGTAGTGCCCGCCAGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * *
3306179 AGGCATACGGTGTTCATTCCTAGTCTAAGATT-GAAGCAGATCGAGGGTTGTGGCAGCAGGATCG
713 AGGCATAAGGAGTTCATTCCAAGTCTAAGATTGGAA-CGGACCGAGGGTTGTGGCAGCAGGATCG
* * * * * **
3306243 GTAGAACGTAGAGGGGGACCCGATCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCC---GGC-
777 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCTTAGGCA
** * **
3306304 TGAGCGCCCGTACACTCGTTTCATGGGT-TGACA
842 T-AG-G-GAGTTCA-T--TCCCA---GTCT-A-A
* * * * *
3306337 TTGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCGGCAGCACATGCT
1 ---GCATAAGGAGTTCATTCCCAGTCTAAGATCGAACCGGACAGAGGGTTGCGGCAGCACATGCT
* * * * *
3306402 GGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGTTGG
63 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGG
* * * * * *
3306467 AGAACCTGACCGGTGACATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGGTGTGCGCAAATGAT
128 AGAACCTGACCGGCGGCATTGGGGTTCTGGCGATC-GAGAGGCCGGGGGGGTGTGCACACATGAT
* * *
3306532 GTGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
3306597 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGA
* *
3306662 AATGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTG-ATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* ** ** ** *
3306726 TTGTGAATGGAAACAAAAATACAAGGATCGTGTCTACCAAGTTTGGGGTGAAAACGCCTTCTGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* *
3306791 AAAATTTTAAAAAATCTCGACCCGTAAAAAGTTTCAAAAATCATGAAAAAT-GCAAAACGAGTCG
452 AAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAG-AAAACGAGTCG
3306855 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*** * *
3306920 ATTATTGGCACATAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCT
581 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
3306985 TGCGCATCCCGCCTCTCCGGCCGGCCTAGTGCCCGCCAGCCCGCCCGCTCGTTTCGTCGGTTGGC
646 TGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCAGCCCGCCCGCTCGTTTCGTCGGTTGGC
* ** *
3307050 TTAGGCATAAGGAGTTCATTCCAAGTCTAAGATCGGCCCGGACCGAGGGTTGTGGCAGCAAGATC
711 TTAGGCATAAGGAGTTCATTCCAAGTCTAAGATTGGAACGGACCGAGGGTTGTGGCAGCAGGATC
*
3307115 GGCAGCACACAG-GCGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCTTAGG
776 GGCAGCACGCAGAG-GGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCTTAGG
3307179 CATAGGGAGTTCATTCCCAGTCTAA
840 CATAGGGAGTTCATTCCCAGTCTAA
* * * *
3307204 GCATATGAAGTTCATTCCCAGTCTAAGATCAAACCGGAGCAG-GGGTTGCAGCAGCACATGCTGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGAACCGGA-CAGAGGGTTGCGGCAGCACATGCTGG
* *
3307268 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGAACCATCGTCGGAGCATC-ACAGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-GGA
* *
3307332 GAACCTAACCGGCGGCATTGGGGTTCTGGCAATCGAGAGGCCCGGGGGGGTGTGCACACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCTGGCGATCGAGAGG-CCGGGGGGGTGTGCACACATGATG
*
3307397 TGCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTTGAGAATTC
193 TGCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
3307462 ACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAA
3307526 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
3307591 TGTGCATGCCAACAAAAATACAAGAATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTGTGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* ** * *
3307656 AAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTC
453 AAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
3307721 TTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
3307786 CATTGGAACACAGAAATTTGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCAGGGCTTG
583 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
3307851 CGCATCCCGTCTCTCTGGCCGGAGTAGTGCCCGCCCA-CCCTCCCGCTCATTTCATCGGTCGGCT
648 CGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCG-CCAGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * * *
3307915 TAGGCATATGGAGTTCATTCCCAGTTTAAGATTGGAATGGACCGAGGGTTGCGGTAGCAGGATCA
712 TAGGCATAAGGAGTTCATTCCAAGTCTAAGATTGGAACGGACCGAGGGTTGTGGCAGCAGGATCG
* *
3307980 GCAGCACGCAGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCTACCCCTTTGGCCGGTTGAT
777 GCAGCACGCAGAGGGGGACCCGACCGAT-CCC--C--G-GC-T--TA---C----G-C-----AT
* **
3308045 GGCCCGCACGCTCGTTTCATGAGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
820 --CCCGC-C-C-C---TC-T--G--GCCTTAGGCATAGGGAGTTCATTCCCAGTCTAA
* * * * * * *
3308103 GCATAAGGAGTTCATTCCTAGTCTAAGATTGGACCAGGCCA-TGGGTTGTGGCAGCACATGATGG
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGAACC-GGACAGAGGGTTGCGGCAGCACATGCTGG
* * * * * * * *
3308167 CCTCGAGCATATGCTAGTGCTGCAATTTTCTTCGTCGGGGCACCATC-ACTGGAGTATCGTCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGTCGGA
* * * * * ** * * *
3308231 GAATCTGACCGACGGCATTGGGGTTCCGGTGATCGGAGGGGTTAGAGGGGGTGTGCGCACATGGT
129 GAACCTGACCGGCGGCATTGGGGTTCTGGCGATC-GAGAGG-CCGGGGGGGTGTGCACACATGAT
* * **
3308296 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-TCTCATCAAAAATTGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
* * *
3308360 CACACCCCCTTAAAGAGC-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGA
*
3308424 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
** * * * * * *
3308489 TTGTGCATGCCAATGAAAATACAAGGCTCACATCTACTAAGTTTGGGGCCAAAGCCCCTTCCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* * *
3308554 AAAATTTTAAAAAATCTCGAACCACACAAAGTTTCAAAAATCATGAAAAATAGAAAAGGAGTCGT
452 AAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * * *
3308619 CTTACCATTAAACTCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
**
3308684 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
582 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
3308746 TGTCATGAGC
Statistics
Matches: 2090, Mismatches: 239, Indels: 111
0.86 0.10 0.05
Matches are distributed among these distances:
855 9 0.00
856 130 0.06
858 1 0.00
859 1 0.00
862 2 0.00
863 120 0.06
864 649 0.31
865 408 0.20
867 3 0.00
868 5 0.00
869 3 0.00
870 5 0.00
871 4 0.00
872 1 0.00
873 124 0.06
874 5 0.00
875 1 0.00
876 6 0.00
877 1 0.00
880 1 0.00
881 1 0.00
886 2 0.00
888 5 0.00
889 1 0.00
890 1 0.00
891 1 0.00
894 2 0.00
895 1 0.00
897 1 0.00
898 1 0.00
899 514 0.25
900 81 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (864 bp):
GCATAAGGAGTTCATTCCCAGTCTAAGATCGAACCGGACAGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGAGAGGCCGGGGGGGTGTGCACACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
TTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCAGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATAAGGAGTTCATTCCAAGTCTAAGATTGGAACGGACCGAGGGTTGTGGCAGCAGGATCGGCAG
CACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCTTAGGCATAGG
GAGTTCATTCCCAGTCTAA
Found at i:3317663 original size:702 final size:705
Alignment explanation
Indices: 3316310--3317803 Score: 2063
Period size: 702 Copynumber: 2.1 Consensus size: 705
3316300 AGCGCCCGTA
* * * *
3316310 CGCTCGTTTCGTGGGCTGGCTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
* * * * * *
3316375 AGGGTTGTGGTAGCACATGCTAGGCTTGGGCATGTGCTAGTGCCACATTTCTCTTTGCCGCGGCA
66 AGGGTTGCGGTAGCACATGCTAGGCTCGAGCATATGCTAGTGCCACATTTCTCTTCGCAGCGGCA
* * * *
3316440 CCATCGTCAGAGTATCGCCGGAGAGCCTGACCGATGACATATGGGTTCCGACGATCGGGGGGCCG
131 CCATCGCCAGAGCATCGCCGGAGAACCTGACCGACGACATATGGGTTCCGACGATCGGGGGGCCG
3316505 GGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGACCTTACATTGGCCCCCTATCCCT
196 GGGGTGT-CG-ACA--ATGTGCGATAGGTGCTGGTACTTGGACCTTACATTGGCCCCCTATCCCT
*
3316570 CATCAAACCCCAAGAACTCACACCCCCGTAAAGAGCATTTGAAATTTTACAGGTTTTCTGCCAGT
257 CATCAAACCCCAAGAACTCACACCCCCGTAAAGAGCATTTGAAATTTTACAGGTTTCCTGCCAGT
3316635 AGCCATTAAAGTGTCTGAAATGGGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGA
322 AGCCATTAAAGTGTCTGAAATGGGGACACTTTCTTCAAATGGTCACAAAATCTTGTA-AC-TC-A
* * * *
3316700 GTTTTTACCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTAGTTTGTGGCCA
384 GTGTTTACCTGAATTTTTTTATGCAAGCCAAAAAAAATACAAGCATCACGTCTAGTTTGGGGCCA
* * * *
3316765 AAACTCTTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAAT
449 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAATTTTAAAAATAGTGAAAAAT
* * *
3316830 AGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTAC
514 AGAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*
3316895 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCATCTACCACCCTA
579 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * *
3316960 TCGATCCACGGCTTACGCATCC-CGTCATT-T-TGGTCGACGTAGTGCCCGCCTACCCGCCCTCC
644 TCGATCCACAGCTTACGCATCCAC-T--TTCTCTGGCCGACGTAGTGCCCACCCACCCGCCCGCC
* *
3317022 GGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
* * * * *
3317087 AGGGTTGCGGCT-GCACATGCTGGGCTCGAGCATATGCTGGTGCCACATTTTTCTTCGTAGGGGC
66 AGGGTTGCGG-TAGCACATGCTAGGCTCGAGCATATGCTAGTGCCACATTTCTCTTCGCAGCGGC
* *
3317151 ACCATCGCCGGAGCATCGCCGGAGAACCTGACCTG-CGGCAT-TGGGGTTCCGGA-GATCGGGGG
130 ACCATCGCCAGAGCATCGCCGGAGAACCTGACC-GACGACATAT-GGGTTCC-GACGATC-GGGG
* * * *
3317213 GGTCGGGGGTGT-G-C-ATGTGCGAT-GGTTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCC
191 GGCCGGGGGTGTCGACAATGTGCGATAGG-TGCTGGTACTTGGACCTTACATTGGCCCCCTATCC
* * * * *
3317274 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACGGGTTTCCTGCCA
255 CTCATCAAACCCCAAGAACTCACACCCCCGTAAAGAGCATTTGAAATTTTACAGGTTTCCTGCCA
* *
3317339 GTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGT-A-T-AG
320 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTCTTCAAATGGTCACAAAATCTTGTAACTCAG
* * *
3317401 -GTTTAGCTGAATTTTTTTATGCATGCC-AAAAAAATACAAGCATTACGTCTACCAAGTTTGGGG
385 TGTTTACCTGAATTTTTTTATGCAAGCCAAAAAAAATACAAGCATCACGTCT----AGTTTGGGG
3317464 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG-AAAAAATTTTCAAAAATAGTGAA
446 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAATTTT-AAAAATAGTGAA
3317528 AAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
510 AAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
3317593 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
575 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * *
3317658 CCTATCGATCCACAGCTTGCGCATCCACTTTCTCTGGCCGATGTAGTGCCCACCCGCCCGTCCGC
640 CCTATCGATCCACAGCTTACGCATCCACTTTCTCTGGCCGACGTAGTGCCCACCCACCCGCCCGC
3317723 C
705 C
* * * * *
3317724 CGCTCATTTTGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACAAGA-TC
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-
3317788 GAGGGTTGTC-GTAGCA
65 GAGGGTTG-CGGTAGCA
3317804 GGATCGGTAG
Statistics
Matches: 698, Mismatches: 67, Indels: 44
0.86 0.08 0.05
Matches are distributed among these distances:
698 21 0.03
699 23 0.03
700 4 0.01
701 12 0.02
702 301 0.43
703 2 0.00
704 1 0.00
705 2 0.00
706 156 0.22
709 1 0.00
711 2 0.00
712 154 0.22
713 19 0.03
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (705 bp):
CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
AGGGTTGCGGTAGCACATGCTAGGCTCGAGCATATGCTAGTGCCACATTTCTCTTCGCAGCGGCA
CCATCGCCAGAGCATCGCCGGAGAACCTGACCGACGACATATGGGTTCCGACGATCGGGGGGCCG
GGGGTGTCGACAATGTGCGATAGGTGCTGGTACTTGGACCTTACATTGGCCCCCTATCCCTCATC
AAACCCCAAGAACTCACACCCCCGTAAAGAGCATTTGAAATTTTACAGGTTTCCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTCTTCAAATGGTCACAAAATCTTGTAACTCAGTGTTTA
CCTGAATTTTTTTATGCAAGCCAAAAAAAATACAAGCATCACGTCTAGTTTGGGGCCAAAACTCC
TTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAATTTTAAAAATAGTGAAAAATAGAAAAC
GAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
ACAGCTTACGCATCCACTTTCTCTGGCCGACGTAGTGCCCACCCACCCGCCCGCC
Found at i:3319675 original size:26 final size:26
Alignment explanation
Indices: 3319638--3319688 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
3319628 GTTGACTTAG
3319638 GCATAGGAAGTTCATTCCCAGTCTAA
1 GCATAGGAAGTTCATTCCCAGTCTAA
3319664 GCATACGG-AGTTCATTCCCAGTCTA
1 GCATA-GGAAGTTCATTCCCAGTCTA
3319689 GGATTGGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATAGGAAGTTCATTCCCAGTCTAA
Found at i:3320067 original size:884 final size:880
Alignment explanation
Indices: 3317046--3323980 Score: 8063
Period size: 902 Copynumber: 7.9 Consensus size: 880
3317036 GTTGGCTTAG
* * * *
3317046 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCTGCACATGCTGGG
1 GCATAC-GAGTTCATTCCCA-TCTAAGAT-GGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
3317111 CTCGAGCATATGCTGGTGCCACATTTTTCTTCGTAGGGGCACCATCGCCGGAGCATCGCCGGAGA
63 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCG-TGGAGCATCGCCGGAGA
* *
3317176 ACCTGACCTG-CGGCATTGGGGTTCCGGA-GATCGGGGGG-GTCGGGGGTGT--G--C---ATGT
127 ACCTGACC-GATGGCATTGGGGTTCC-GACGATCGGGGGGCG-GGGGGGTGTGCGCACATGATGT
*
3317231 GCGATGGTTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCA
189 GCGATGG-TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
3317296 CACCCCCTTAAAGAGCATTTGAGATTTTACGGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGAAA
253 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
3317361 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGT--A--T--AG-GTTTAGCTGAATTTTTTT
318 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
3317419 ATGCATGCCAA-AAAAATACAAGCATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
383 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
3317483 AATTTTAAAAAATCCCGAACCGAAAAAATTTTCAAAAAT-AGTGAAAAATAGAAAACGAGTCGTC
448 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTC
*
3317547 TTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
512 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
3317612 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
577 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
3317677 CGCATCCAC-TTTCTCTGGCCGATGTAGTGCCCACCCGCCCGTCCGCCCGCTCATTTTGTCGGTT
642 CGCATCC-CGTCTCTCTGGCCGACGTAGTG----CCCGCCTGTCC-CCCGCTCGTTTCGTCGGTT
* * * *
3317741 GGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACAAGATCGAGGGTTGTCGTAGCAGG
701 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-GG--GT--TAGCA-G
* * * *
3317806 ATCGGTAGCACGTAGAGGGGGACCCGATCGATCCCCAGGTTGCGCATCCCGCCCCTTTGGCCGGC
760 --C---AGCACGCAGAGGGGGACCCGGTCGAT-CCTAGCTTGCGCATCCCGCCCCTTTGGCCGGC
* * * *
3317871 TGACCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGG-AGTTCATTCCCAATCTAA
819 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-GGAAGTTCATTCCCAGTCTAA
* * * *
3317933 G-AT-C-A---CA----C--C------GGACC--A---AGGGTTGCAGCAGCACATGTTGGCCTC
1 GCATACGAGTTCATTCCCATCTAAGATGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTC
*
3317975 GGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
66 GGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGT-GGAGCATCGCCGGAGAACC
*
3318040 TGACCGATGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTGTGA
130 TGACCGATGGCATTGGGGTTCCGACGATCGG-GGGG-CGGGGGGGTGTGCGCACATGATGTGCGA
* *
3318105 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTTGAGAACTCACACC
193 T-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
3318170 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTTAAATGCG
257 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * ** *
3318235 GACACTTTTTTCGAGTGGTCACAAAATCTTG-A-ATTTTTAGTTTTTAGCTGAATTTTTTAGTGC
322 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
3318298 ACGTCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
387 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * * * *
3318363 TAAAAAAATCTCGAACTGCAAAAAGATTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCC
452 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
3318428 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTG
517 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
3318493 GCACT-CAGAAATATGAAGATGTGCCTAAACTCATCTACCATCCTATCGATCCACGGCTTGCGCA
582 GCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * * * *
3318557 TCCCGTCTTTCTGGCCGGCGTAGTGCCCTCCCGTTCGCCCGCTCATTTTGTCGATTGGCTTAGGC
646 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTG-TCCCCCGCTCGTTTCGTCGGTTGGCTTAGGC
3318622 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCACCAGCAGGATCTGCAGC
710 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT-----AGC---A---GCAGC
* *
3318687 ACGCAGAGGGGGACCCGGTCGATCCTCGGCTTGCGTC-TCCCGCCCCTTTGGCCGGCTGAGCACC
764 ACGCAGAGGGGGACCCGGTCGATCCT-AGCTTGCG-CATCCCGCCCCTTTGGCCGGCTGAGCGCC
*
3318751 CGCACCCTCGTTTCGTGGGTTGACTTAGGCATACGG-AGTTCATTCCCAG--T--
827 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-GGAAGTTCATTCCCAGTCTAA
3318801 -C-TA--AG---------ATC------GGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTC
1 GCATACGAGTTCATTCCCATCTAAGATGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTC
* *
3318847 GGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGATCC
66 GGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGT-GGAGCATCGCCGGAGAACC
* * * * * * * * *
3318912 TGATCGGTGACATTAGGGCTCCGAAGATCGGGGGGGCCGGGGGGTGTGCGCAAATGATGTGTGAT
130 TGACCGATGGCATTGGGGTTCCGACGATC-GGGGGGCGGGGGGGTGTGCGCACATGATGTGCGAT
* * *
3318977 AGGTACGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
194 -GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
3319042 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
258 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * **
3319107 ACACTTTTTTCAAGTGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATCGTTTTGTGCA
323 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* ** *
3319172 TGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTGAAAACTCCTTCTGAAAAAATTT
388 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
3319237 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
453 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* **
3319302 TGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCATTGG
518 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
3319367 CACGCAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCGACGGCTT-CACATC
583 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * *
3319431 CCGTCTCTCTGACCAACATAGTGCCTGCCTG-CCATCCGCTCGTTTCGTTGGTTGGCTTAGGCAT
648 CCGTCTCTCTGGCCGACGTAGTGCCCGCCTGTCC-CCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
** * ** *
3319495 ACAAAGTTCATTCCCAGTCTAAGTTTAGACCGGACCGAGGGTT-GCAGCAGCACGCAGAGGGGGA
712 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTAGCAGCAGCACGCAGAGGGGGA
* * * * ***
3319559 CCCGGCCGATCTCTAGCTTGTGCATCCAGCCCCTATGGATTGCTGAGCGCCCGCACGCTCGTTTC
777 CCCGGTCGATC-CTAGCTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
3319624 GTGGGTTGACTTAGGCATAGGAAGTTCATTCCCAGTCTAA
841 GTGGGTTGACTTAGGCATAGGAAGTTCATTCCCAGTCTAA
* * *
3319664 GCATACGGAGTTCATTCCCAGTCTAGGATTGGACCGGACCGAGGGTTACCGCAGCACATGCTTGG
1 GCATAC-GAGTTCATTCCCA-TCTAAGA-TGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
3319729 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCGAAGA
63 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCG-TGGAGCATCGCCGGAGA
* * ** * * *
3319794 ATCTGATCGGCGACATTGGGGTTTCGACGATCGGGGGTCGGGGGGGTGTGCGCACATGATGTGCG
127 ACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCG
* *
3319859 ATGGTTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
192 ATGG-TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
3319924 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
256 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
3319989 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTGTTTAGCTGAATTTTTTTATG
321 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
3320054 CATGCCAACAAAAATACAAGGATTACATCTACCAAGTTTGGTGCCAAAACTCCTTTCGAAAAAAT
386 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * *
3320119 TTTAAAAAATCCCGAACC-TCAAAAAATTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTTTTG
451 TTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
3320183 CCATGAAACTTCACGTGAAGGCTTAGGGGACAATTGCATGAATTTACAAGCCATAAAAATGGCAT
515 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
3320248 TGGCATGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGC
580 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
3320313 ATCTCGTCTTTCTGGTCGACGTAGTACCCGCCTGTCCACTTGCCTGATCGTTTCATCGGTTGGCT
645 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGTCC-C---CC-GCTCGTTTCGTCGGTTGGCT
*
3320378 TAGGCATGCGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACACCAAGATCA
705 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT---------AG--CA
* * * * *
3320443 GCAGCACGCAGAGAGAGACCCGGTCGATCCTCGACTTGCGCATCCCG-CCCTTCTCGTCGGCTGA
759 GCAGCACGCAGAGGGGGACCCGGTCGATCCTAG-CTTGCGCATCCCGCCCCTT-TGGCCGGCTGA
** * * * *
3320507 GCGCCTACACGCTCATTTCGTGGGTTGAC-TAGGCATA-CAGAGTTTATTCCTAGTCTAA
822 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGGA-AGTTCATTCCCAGTCTAA
* *
3320565 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTAGG
1 GCATAC-GAGTTCATTCCCA-TCTAAGAT-GGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* *** ** * ** **
3320630 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCCAGGCACGATCGCCAGAGCATCATCGGAGA
63 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCG-TGGAGCATCGCCGGAGA
* * * *
3320695 ACCTGACCAACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGAACATGATGTGC
127 ACCTGACCGATGGCATTGGGGTTCCGACGATC-GGGGGGCGGGGGGGTGTGCGCACATGATGTGC
*
3320760 GATGAGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
191 GATG-GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
3320825 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTGAAATG
255 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
3320890 GGGACACTTTTTTCAATTGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTGTGT
320 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
3320955 GCATGCCAACAAAAATACAAGGACCATGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAA
385 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
3321020 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTTGTCCTG
450 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * * *
3321085 CCTTGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTGCAAACCATAAAAATGGCAT
515 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
3321150 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCTCGGCATGCGC
580 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
3321215 ATCCTGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCTCGCCCGCTTGTTTCGTCGGTT
645 ATCCCGTCTCTCTGGCCGACGTAGT----GCCCG--C-CT-G-TCCCCCGCTCGTTTCGTCGGTT
* * *
3321280 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCATATCGAGGGTTGTGGCAGCAGG
701 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG-T-T---AGC---
* * * * *
3321345 ATCGACAGCACGTAGAGGGGGACCCGGTCGATCCTTAGCTTACACATCCCGCCTCTCTGGCCGGC
758 A--G-CAGCACGCAGAGGGGGACCCGGTCGATCC-TAGCTTGCGCATCCCGCCCCTTTGGCCGGC
* * * * ***
3321410 AGAGTGCCCGCACGCTTGTTTTGTGGGTTGACTTAGGCATACGG-AGTTCATTATGAGTCTAA
819 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-GGAAGTTCATTCCCAGTCTAA
* * * * * *
3321472 GCATACGGAGTTCAATCCCTATCTAAGATCAGACCAGACCAAGGCTTACGGCAGCACATGCTGGA
1 GCATAC-GAGTTCATTCCC-ATCTAAGAT-GGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * ** *** * *
3321537 ATCGGGCATGCG-TCGACGTTGCATTTTTCCTCACCGGGGCACCA---T------T-GCCGGAGA
63 CTCGGGCATGTGCT-GGTGCCACATTTTTCTTCATCGGGGCACCATCGTGGAGCATCGCCGGAGA
* ** * * *** * *
3321591 ACCTTATTGGTGGCATTGGGTTTCCGACGATCGGGGGGCTAAGGGGTGTGCACACATGATGTGCA
127 ACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCG
3321656 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
192 AT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
3321721 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
256 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
3321786 GGACACTTTTTTCTAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTGTG
321 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
3321851 CATACCAACAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
386 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * * *
3321916 TTTAAAAAATCTCGAACCATAAAAAACTTTCAAAAATCATGAAAAAGAGAAAACGAGTTGTCTTG
451 TTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
3321981 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
515 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
3322046 TGGCAGGTAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCATGGCTTACGC
580 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** * * ** *
3322111 ATCCTATCTCTCTGGCTGACATAGTGCCCGCC-CACCCACGTACTCGTTTCGTCGGTTGGCTTAG
645 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGTCCCCCG--CTCGTTTCGTCGGTTGGCTTAG
** * * * *
3322175 GCATACACAGTTCATTCCCAGTCTAAGATTGGACTAGACTGAGGTTTGCGGCAGCAGTATCAACA
708 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT-----AGCAG------CA
* * * *
3322240 GCACGCAGAGGGGGACCTGGCCGATCCCTGGCTTGCGCATCCCGCCCCTTTGGCCGGCTAAGCGC
762 GCACGCAGAGGGGGACCCGGTCGAT-CCTAGCTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCGC
* * *
3322305 CCGCACGCTCGTTTCGTGGGCTGACTTAAGCATA-CAGAGTTCATTCCCAGTCTAA
826 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGGA-AGTTCATTCCCAGTCTAA
* *
3322360 G-AT-C-AG---------ATC----A--GACC--A---AGGGTTACGACAGCAGATGCTGGGCTC
1 GCATACGAGTTCATTCCCATCTAAGATGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTC
*
3322402 GGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCA---T----CA---CCAGAGAACCT
66 GGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTGGAGCATCGCCGGAGAACCT
*
3322457 GACCGATGGCATTGGGGTT-CGACGATCGGGGGGCCGGGGGGTGT--GCACATGATGTGCGATGG
131 GACCGATGGCATTGGGGTTCCGACGATCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGAT-G
* *
3322519 GTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
195 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
3322584 TTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGTGGAC
260 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
3322649 ATTTTTTTCAAATGGTCACAAAAT-TTGTACACTTTGAGTTTTTAGCT-AATTTTTTTTGTGCAT
325 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCAT
* * * *
3322712 GACAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTA
389 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * *
3322777 AAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTCGCCAT
454 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
3322842 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACCAGCCATAAAAATGGCATTGGC
519 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
3322907 ATGGAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCGTCC
584 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * **
3322972 AGTCTCTCT-ACTCGACGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTCCGTCATTTGGCTTAG
649 CGTCTCTCTGGC-CGACGTAGT----GCCCGCCTGTCC-CCCGCTCGTTTCGTCGGTTGGCTTAG
* *
3323036 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATTGACA
708 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG-T----TAGC---A--G-CA
* * * * * * * * * *
3323101 GCACGCACAAGGGGACCCGATCGACCCTGGGTTACGCATTCTGCCCCTTTGGCCGGCTGAGTGCC
762 GCACGCAGAGGGGGACCCGGTCGATCCTAGCTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCGCC
* * *
3323166 CGCACGCTTGTTTCGTGGGTTGACTTAGGCATA-CAGAGTTCATTCCTAGTCTAA
827 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGGA-AGTTCATTCCCAGTCTAA
** ** *
3323220 GCATACAGAGTTCATTCCCAGTCTAAGATTGGAATGGACCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATAC-GAGTTCATTCCCA-TCTAAGA-TGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * ** * *
3323285 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCACTGGAGA
63 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATC-GTGGAGCATCGCCGGAGA
* * * * **
3323350 ACCTGACCGATGGCATTAGGGTTCCGACGATTGGGGGGCCGGGGGGGTCTGCGCACATGATTTAT
127 ACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGG-CGGGGGGGTGTGCGCACATGATGTGC
* *
3323415 GATCGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACA
191 GAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
3323480 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
255 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* **
3323545 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACTCTTCGAGTTTTTATTTGAATTTTTTTGT
320 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
3323610 GCATGCCAAAAAAAATACAAGGATAATGTCTACCAAGTTTGGGGCCAAAACTCGTTCC-AAAAAA
385 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * *
3323674 GTTTAAAAAGATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGCCCT
450 TTTTAAAAA-ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
3323739 GCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCA
514 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
3323804 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
579 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * * * *
3323869 CATCCCATCTCTCTGGCTGGCGTAGTGCTCGCCCGTCCGCCAGTTTGTTTCATCGGTTGGCTTAG
644 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGTCC-CCCGCTCGTTTCGTCGGTTGGCTTAG
* * *
3323934 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGACCAAGGGTT
708 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
3323981 GCGGTAGCAC
Statistics
Matches: 5237, Mismatches: 598, Indels: 420
0.84 0.10 0.07
Matches are distributed among these distances:
856 1 0.00
857 181 0.03
858 109 0.02
859 263 0.05
860 90 0.02
861 221 0.04
862 87 0.02
863 12 0.00
864 6 0.00
865 6 0.00
866 7 0.00
867 14 0.00
868 2 0.00
869 3 0.00
870 158 0.03
871 246 0.05
872 316 0.06
873 262 0.05
874 7 0.00
875 27 0.01
876 250 0.05
877 3 0.00
878 3 0.00
880 2 0.00
881 2 0.00
883 6 0.00
884 444 0.08
885 147 0.03
886 72 0.01
887 4 0.00
888 165 0.03
889 5 0.00
890 61 0.01
892 5 0.00
893 1 0.00
894 2 0.00
895 290 0.06
896 210 0.04
897 29 0.01
898 82 0.02
899 9 0.00
900 4 0.00
901 344 0.07
902 814 0.16
903 6 0.00
905 1 0.00
906 134 0.03
907 115 0.02
908 3 0.00
909 2 0.00
910 2 0.00
911 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (880 bp):
GCATACGAGTTCATTCCCATCTAAGATGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTC
GGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTGGAGCATCGCCGGAGAACCT
GACCGATGGCATTGGGGTTCCGACGATCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGACGTAGTGCCCGCCTGTCCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTAGCAGCAGCACGCAGAGGGGGACCCG
GTCGATCCTAGCTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
TTGACTTAGGCATAGGAAGTTCATTCCCAGTCTAA
Found at i:3320575 original size:26 final size:26
Alignment explanation
Indices: 3320539--3320591 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3320529 GGTTGACTAG
* *
3320539 GCATACAGAGTTTATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
3320565 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3320591 G
1 G
3320592 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3323230 original size:26 final size:26
Alignment explanation
Indices: 3323194--3323246 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3323184 GTTGACTTAG
*
3323194 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3323220 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3323246 G
1 G
3323247 ATTGGAATGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3324057 original size:11 final size:11
Alignment explanation
Indices: 3324041--3324066 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
3324031 GTCGGGGCAC
3324041 CATCGTCGGAG
1 CATCGTCGGAG
3324052 CATCGTCGGAG
1 CATCGTCGGAG
3324063 CATC
1 CATC
3324067 ACCGGAGAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:3324596 original size:724 final size:717
Alignment explanation
Indices: 3323220--3324717 Score: 2286
Period size: 724 Copynumber: 2.1 Consensus size: 717
3323210 CCTAGTCTAA
* * * *
3323220 GCATACAGAGTTCATTCCCAGTCTAAGATTGGAATGGACCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * *
3323285 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCACTGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCACCGGAGA
* * * * *
3323350 ACCTGACCGATGGCATTAGGGTTCCGACGATTGGGGGGCCGGGGGGGTCTGCGCACATGATTTAT
131 ACCTGACCGACGGCATTAGGGTTCCAACGATCGGGGGGCCGGGGGGGTCTGCGCACATGATGTAC
** *
3323415 GATCGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACA
196 GAAAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACA
*
3323480 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATG
* * * **
3323545 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACTCTTCGAGTTTTTATTTGAATTTTTTTGT
326 GGGACACTGTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTTTTTTGT
* *
3323610 GCATGCCAAAAAAAATACAAGGATAATGTCTACCAAGTTTGGGGCCAAAACTCGTTCCAAAAAAG
391 GCATGCCAAAAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAG
3323675 TTTAAAAAGATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGCCCTG
456 TTTAAAAAGATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGCCCTG
*
3323740 CCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCAT
521 CCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
3323805 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
586 TGGCATGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
3323870 ATCCCATCTCTCTGGCTGGCGTAGTGCTCGC-C-C-GTCCGCCAGTTTGTTTCATCGGTTGGCTT
651 ATCCCATCTCTCTGGCCGGCGTAGTGCCCGCACGCTGCCCGCCAGCTCGTTTCATCGGTTGGCTT
3323932 AG
716 AG
*
3323934 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGACCAAGGGTTGCGGTAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGTAGCACATGCTGGG
* **
3323999 CTCGATCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGC
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCA---T-----CA-C--CGGAGC
* * *
3324064 ATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCAACGATCGGGGGGCC-GGGGGGTGTGCGC
120 ATCACCGGAGAACCTGACCGACGGCATTAGGGTTCCAACGATCGGGGGGCCGGGGGGGTCTGCGC
* * *
3324128 ACATGATGTGCGAAAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCTTCATCAAACCTC
185 ACATGATGTACGAAAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTC
3324193 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
250 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
3324258 TGTCCGAAATGGGGACACTGTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTG
315 TGTCCGAAATGGGGACACTGTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTG
*
3324323 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
380 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * * *
3324388 TTCCGAAAGAATTTTAAAAA-ATCTTGAACCGTAGAAAGTTTCAAAAATCATGAAAAATAGAAAA
445 TTCC-AAAAAAGTTTAAAAAGATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* * * * *
3324452 TGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
509 CGAGTCGCCCTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
3324517 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACACGCCTACCACCCTATCGATC
574 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATC
* *
3324582 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCACGTCTGCCCGCCCGCTCGTTT
639 CACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCACG-CTGCCCGCCAGCTCGTTT
*
3324647 CGTCGGTTGGCTTAG
703 CATCGGTTGGCTTAG
* * * * * * *
3324662 GCATACGGAGTTCATTCCGAGTCAAAGATCAGACCAGACCGAGGGCTGCGGCAGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGTAGCA
3324718 GGATCGGTAG
Statistics
Matches: 705, Mismatches: 63, Indels: 18
0.90 0.08 0.02
Matches are distributed among these distances:
714 99 0.14
717 1 0.00
722 2 0.00
723 1 0.00
724 462 0.66
725 65 0.09
727 1 0.00
728 74 0.10
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (717 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGTAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCACCGGAGA
ACCTGACCGACGGCATTAGGGTTCCAACGATCGGGGGGCCGGGGGGGTCTGCGCACATGATGTAC
GAAAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATG
GGGACACTGTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAG
TTTAAAAAGATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGCCCTG
CCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCATCTCTCTGGCCGGCGTAGTGCCCGCACGCTGCCCGCCAGCTCGTTTCATCGGTTGGCTT
AG
Found at i:3324850 original size:26 final size:26
Alignment explanation
Indices: 3324821--3324873 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3324811 GTTGACTTAG
* *
3324821 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3324847 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3324873 G
1 G
3324874 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3325749 original size:26 final size:26
Alignment explanation
Indices: 3325713--3325765 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3325703 GTTGACTTAG
*
3325713 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3325739 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3325765 G
1 G
3325766 ATTGGATATG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3327191 original size:902 final size:899
Alignment explanation
Indices: 3323934--3330589 Score: 8993
Period size: 892 Copynumber: 7.4 Consensus size: 899
3323924 GTTGGCTTAG
* * *
3323934 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGACCAAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
**
3323999 CTCGATCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---T-----CA-C--CGGAGC
* * *
3324064 ATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCAACGATCGGGGGGCC-GGGGGGTGTGCGC
120 ATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGC
** * *
3324128 ACATGATGTGCGAAAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCTTCATCAAACCTC
185 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
3324193 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
250 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
3324258 TGTCCGAAATGGGGACACTGTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTG
315 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* *
3324323 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
380 AATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC
* ** * * *
3324388 TTCCGAAAGAATTTTAAAAAATCTTGAACCGTAGAAAGTTTCAAAAATCATGAAAAATAGAAAAT
445 TTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
*
3324453 GAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
510 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* *
3324518 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACACGCCTACCACCCTATCGATCC
575 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
3324583 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCACGTCTGCCCGCCCGCTCGTTTC
640 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-C--C-GCCCGCCCGCTCGTTTC
* * * * * * *
3324648 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCGAGTCAAAGATCAGACCAGACCGAGGGCTGCGG
701 ATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGG
** ** * * * *
3324713 CAGCAGGATCGGTAGCATGCAGAGAAGGACCCAACCGATCCTCAGCTTGCGCATCTCGCCCCTCT
766 CAGCAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * *
3324778 GGCC-AGTTGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCTG
831 GGCCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
3324842 TCTAA
895 TCTAA
* ** *
3324847 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* *
3324912 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-TCCGGGGCACCATCACCGGAGCGTCCCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-CGGGGCACCATCACCGGAGCATCGCCGGAG
* * * *
3324976 AACCTGACCGGCGGCATTGGGGTTCCGGCAATCGGGGGGGCCGAGAGGGGTGTGCGCACATGATG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCG-GGGGGGTGTGCGCACATGATG
* * *
3325041 TGCAATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
3325106 ACACCCCCTTAAAGAGCTTTTCAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
3325171 ATGCGAACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCT-CATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * **
3325235 TTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTTTGAA
388 TT-TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* *
3325299 AAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGCCG
452 AAAATTTT-AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * *
3325364 CCTTGCCATGAAACTTGACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
3325429 GACATTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCAC-GCT
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
3325493 TGCGTATCCCGTCTCTCTGGCC-G-G-AGT---TG--TGCCCGCCCGCTCGTTTCGTCAGTTGGC
646 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCAGTTGGC
** * * * * *
3325550 TTAGGCATATAGAGTTCATTCACAGTCTAAGATCAGACCAGATCGAGGGTTACGGCAGCAGGATC
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATC
* * * *
3325615 GGCAGCATGCAGAGGAGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGACTGA
776 GACAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGA
*
3325680 GTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
3325739 GCATACAGAGTTCATTCCCAGTCTAAGATTGGA-TATGACCAAGGGTTACGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA-GACCGAGGGTTGCGGTAGCACATGCTGG
* * * ** *
3325803 GCTCAGGCATGTGTTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAG
* * * *
3325868 AACCTGATCGGCGGCATTGGGGTTCCAACGATCGGGGGTGTCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGT
* * *
3325933 GCGATGGGTGCTCGTACTTGGCCCTTATATTTGCCCTCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
3325998 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-CCTAGTAACCGTTAAAGTGTTTGAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC-AGTAGCCATTAAAGTGTCTGAA
* *
3326062 ATGGGGGCACTTTTTTCAAAAT-GTCACAAAATCTTGTACACTTTGAG-TTTTAGCTGAATTTTT
323 ATGGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * **
3326125 TTTTGCATGACAAAAAAAAATACAGGGATCACGTCCACCAAGTTTGGGGCAAAAACTCCTTCTAA
387 TTTTGCATG-CCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
*
3326190 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
451 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
3326255 TCTTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
3326320 GGCATTGGCATGCAAAAATATGAAGATGTGCCGAAACCCACCTACCACCCTATCGATCCACGGCT
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
3326385 TGCGCATCCCGTCTTTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGC
646 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCAGTTGGC
* * ** *
3326450 TTAGGCATACGAAGTTTATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGTGGCAGCAGGATC
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATC
* * * ** * * *
3326515 GACAGCACGTACAGGGGGACCCGGTCGATCCCCGGCTTGCGTATCCCACCCCTCTGGCCGACTGG
776 GACAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGA
* * ** *
3326580 GCGCCCGTACGCTCCTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAA
841 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
3326639 GCACACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTATGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * ** * *
3326704 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGTGCCATCACCGGAGCATCGCCGAAAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
**
3326769 ACCTGACCGACGGCATTGGGGTTCCGACGATCAAAGGGGCCGGGGGGATGTGTGCGCACATGATG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGG--GTGTGCGCACATGATG
* * * *
3326834 TGCGACGGGTGCTGGTACTTGGCCCCTATATTGGCCCCTTGTCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
3326899 ACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
3326964 ATGGGCACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
3327029 TTTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTTCTTTCCGAA
388 TTTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCCGAA
** * *
3327094 AAAATTTTAAAAAATCCCGAACCGCAAAAA-TTTTGAAAATCAAGAAAAATATAAAACGAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
3327158 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*** *
3327223 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
3327288 GCGCATCCCGTCTCTCTGGCCGACGTTGTGCCCACCCGCCCTCTGGCCCGCTTGTTTCATCGGTT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CC-C--GCCCGCTCGTTTCATCAGTT
* * ** * * *
3327353 GGCTTAGGCATACGGAGTTCATTCCAAATCTAAGATTGGATCGGACCGAGGGTTACGGCAACAAG
708 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGG
* * * *** * * *
3327418 ATAGGCAGCATACAGAGGGGGACCCGACCGATCCCTAACTTACGCATCCCGCTCCTCTGGCCGGC
773 ATCGACAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
* * *
3327483 TGAGCGCCCTCACGCTCGTTTCGGGGGTTGAATTAGGCATACGGAGTTCATTCCCAGTCTAA
838 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
3327545 G-AT-C-GA----ATT----G----A-AT-----C--A---AGGGTTGCAGTAGCACATGCTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * ** * * *
3327584 CTCGGGTATGTGCTGGTGCCTCATTTTTCTTCACCGAGGCACCATCACCGGAGCCTCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
* * * *
3327649 ACCTGACTGCCAGCATTGGGGTTCCGACGATCGGGGGGTCGGGGTGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGG-GGGTGTGCGCACATGATGTG
*
3327714 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
3327779 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
3327844 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATGTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
* * * *
3327908 GGCACGGCAAAAAAAAATACAATGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
390 TGCA-TGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
3327973 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
3328038 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
3328103 ATTGGAATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
3328168 GCATCCCGTCTCTCTGACCGGCGTA----CTGCCCGCCTGCCCGTTCGTTT-ACTCAGTTGGCTT
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCA-TCAGTTGGCTT
* * * * *
3328228 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGGACTGAGGGCTGCAGTAGTAGGATCG
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTGCGGCAGCAGGATCG
* * **
3328292 ACAGCATGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAG
777 ACAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAG
*
3328357 CGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCA-T-----TC---
842 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
3328406 -C---CGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * *
3328467 CTCGGGCATGTCCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGACA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
**
3328532 ACCTGACCGACGAAATTGGGGTTCCGACGATCGAGGGGGCC--GGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTG
3328595 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
3328660 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
3328725 GGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATCTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
* *
3328790 TGCATGCC-AAAAAAATAGAAGGATCATGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** * * * *
3328854 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACAAGTGGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
3328919 GCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
3328984 TTGGC-TCGCAGAAATATGAAGATGTACCTAATCCCACCTACCACCCTATCGATCCACGACTTTC
585 TTGGCAT-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
3329048 GCATCCCGTCTCTCTCGTCGGCGTAGTGCTCGCCTGCCCGCCCGCCCCGCTCGTTTCATCAGTTG
649 GCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCG-CCCGCTCGTTTCATCAGTTG
* * **
3329113 GCTTAGGCATATGGAGTTCATTCCCAGTTTAAGATCAGA-CAGGATTGAGGGTT---GCAGC---
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTGCGGCAGCAGG
* *
3329171 A--G-CA-CA--CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAT
773 ATCGACAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
* * *
3329230 TGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
838 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
3329292 TCATACGAAGTTCATTACCAGTCTAAGATCGGACCAGTCTGAGGGTTG-GGACAGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG-TAGCACATGCTGG
* * * * *
3329356 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATGACCAGACCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAG
3329421 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
3329485 CCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTGA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* **
3329550 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCTTGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
3329615 TGGGGACACTTTTTTCAAATTGTCACAAAATATTGTACACTTCGTGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * ** *
3329680 ATGCATGCCAACAAAAATA-AAGGGATCATGTCTACCAAGTTTGGGGCCAAAATTTATTCCAAAA
389 TTGCATGCCAAAAAAAATACAA-GGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * ** * * *
3329744 AAATTTTAAAAAATCCCCAACCACAAAAACTTTTGAAAATCGTGAAAAACAGAAAATGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
3329809 TTGACATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
3329874 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
3329939 CGCATCCCGTCTCTCTGGCTGGTGTAATGCCCACCCGCCTGCCCGCTCGTTTCATCGGTTGGCTA
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTT
* *** * *
3330004 AGGCATACGGAGTTCACTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCAATAGTAGGATTGA
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGA
** * * * * * *
3330069 CAGCACACAGAGGGGGACCTGATCGATCCCCGACTTGTGCATCCCACCCCTCTGGCCGGCTGAGC
778 CAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
* * *
3330134 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGGGTTCATTCCCAATCTAA
843 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
3330191 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTTGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * * ** **
3330256 CTCAGGCAAGTGCTGGTGCCACATTTTTCTTCCTCGGGGCACCATCGTCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
** * *
3330321 ACCTGACCGACGGCATTGATGTTCCGACGATCGGGGGGCTCGAGGGGGTGTGTGCA-ATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGC-CGGGGGGGTGTGCGCACATGATGTG
3330385 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
3330450 ACCCCCTTAAAGAGCATTTGAGATTTTTCAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
3330515 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
3330580 TGCATGCCAA
390 TGCATGCCAA
3330590 CAGTAAAAAG
Statistics
Matches: 5087, Mismatches: 542, Indels: 242
0.87 0.09 0.04
Matches are distributed among these distances:
859 1 0.00
860 2 0.00
864 5 0.00
868 1 0.00
869 3 0.00
870 168 0.03
872 1 0.00
873 4 0.00
874 5 0.00
877 144 0.03
878 415 0.08
879 12 0.00
880 359 0.07
881 204 0.04
882 12 0.00
883 108 0.02
884 6 0.00
885 1 0.00
886 3 0.00
887 66 0.01
888 16 0.00
889 69 0.01
890 163 0.03
891 611 0.12
892 630 0.12
893 4 0.00
894 1 0.00
895 5 0.00
896 2 0.00
897 2 0.00
898 9 0.00
899 443 0.09
900 345 0.07
901 11 0.00
902 441 0.09
903 76 0.01
904 60 0.01
905 400 0.08
906 177 0.03
910 1 0.00
912 1 0.00
913 100 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTT
GCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
CATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:3328412 original size:13 final size:13
Alignment explanation
Indices: 3328394--3328420 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
3328384 CTTAGGCATA
3328394 CGGAGTTCATTCC
1 CGGAGTTCATTCC
3328407 CGGAGTTCATTCC
1 CGGAGTTCATTCC
3328420 C
1 C
3328421 AGTCTAAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.22, T:0.30
Consensus pattern (13 bp):
CGGAGTTCATTCC
Found at i:3329303 original size:26 final size:26
Alignment explanation
Indices: 3329267--3329317 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3329257 TTGACTTAGG
*
3329267 CATACGAAGTTCATTCCCAGTCTAAT
1 CATACGAAGTTCATTACCAGTCTAAT
3329293 CATACGAAGTTCATTACCAGTCTAA
1 CATACGAAGTTCATTACCAGTCTAA
3329318 GATCGGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTACCAGTCTAAT
Found at i:3330195 original size:26 final size:26
Alignment explanation
Indices: 3330165--3330217 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3330155 GTTGACTTAG
*
3330165 GCATACGGGGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
3330191 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3330217 G
1 G
3330218 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:3331374 original size:809 final size:808
Alignment explanation
Indices: 3329779--3331398 Score: 2189
Period size: 809 Copynumber: 2.0 Consensus size: 808
3329769 AAAACTTTTG
3329779 AAAATCGTGAAAAACAGAAAATGAGTCGTCTTGACATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAACAGAAAATGAGTCGTCTTGACATGAAACTTCACGTGAAGGCTTAAGGGACC
3329844 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
* * *
3329909 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGTGTAATGCCCACC
131 CCACCCACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCTGGTGTAACGCCCACC
*
3329974 CGCCTGCCCGCTCGTTTCATCGGTTGGCTAAGGCATACGGAGTTCACTCCCAGTCTAAGATCAGA
196 CGCCTGCCCACTCGTTTCATCGGTTGGCTAAGGCATACGGAGTTCACTCCCAGTCTAAGATCAGA
* * * * *
3330039 TCGGACCGAGGGTTGCAATAGTAGGATTGACAGCACACAGAGGGGGACCTGATCGATCCCCGACT
261 CCAGACCGAGGGTTGCAACAGTAGGATCGACAGCACACAGAGGGGGACCCGATCGATCCCCGACT
* * * * *
3330104 TGTGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
326 TGCGCATCCCACCCCTCTGGCCGGCTAAGCACCCCCAAGCTCGTTTCATGGGTTGACTTAGGCAT
* *
3330169 ACGGGGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAG
391 ACGGAGTTCACTCCCAATCTAAGCATAC-GAG--------CAG-C----AT--GA-C-GACCGAG
** * *
3330234 GGTTGTTGTAGCACATGCTGGGCTCAGGCAAGTGCTGGTGCCACATTTTTCTTCCTCGGGGCACC
438 GGTTGCGGCAGCACATGCTGGGCTCAGGCAAGTGCTCGTGCCACATTTTTCTTCCTCGGGGCACC
** * * *
3330299 ATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGATGTTCCGACGATCGGGGGGCTCGA
503 ATCACCAGAGCATCATCGGAGAACCTGACCGACGGCAGTGAGGTTCCGACGATCGGGGGGCTCGA
* * * * *
3330364 GGGGGTGTGTGCAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
568 GGGGGTGTGCGCAATGATGTGCGATGGGTGCTGGTACCTAGCCCTTATATTGGCCCCCTATCACA
*
3330429 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTTCAGATTTGCTGCCAGT
633 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGT
*
3330494 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGA
698 AGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGA
* *
3330559 GTTTTTAGCTGAATTTTTTTTTGCATGCCAACAGTAAAAAGTTTCA
763 GTTTTTAGCTGAAATTTTTTGTGCATGCCAACAGTAAAAAGTTTCA
* * * *
3330605 AAAATCGTGAAAAATAGAAAATGAGTTGTCTTGCCATGAACCTTCACGTGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAACAGAAAATGAGTCGTCTTGACATGAAACTTCACGTGAAGGCTTAAGGGACC
3330670 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
* **
3330735 CCACCCACCACCCTATCGATCCATGGCTTGCGCATCCCATCTCTCTGGCTGGCATAGTGCCCGCC
131 CCACCCACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCTGG--T-GT-AACG--
* ** * *
3330800 CGTCCGCCCGCCTGCCCACTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
190 C--CCACCCGCCTGCCCACTCGTTTCATCGGTTGGCTAAGGCATACGGAGTTCACTCCCAGTCTA
** * *** * * *
3330865 AGATTGGACCAGACTGAGGGTTGTGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGAT
253 AGATCAGACCAGACCGAGGGTTGCAACAGTAGGATCGACAGCACACAGAGGGGGACCCGATCGAT
* * **
3330930 CCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCACCCCCAAGCTCGTTTCGTGGGTTGTT
318 CCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTAAGCACCCCCAAGCTCGTTTCATGGGTTGAC
*
3330995 TTAGGCATACGGAGTTCACTCCCAGTCTAAG-AT-C-AG-A-C-T-A-GACCGAGGGTTGCGGCA
383 TTAGGCATACGGAGTTCACTCCCAATCTAAGCATACGAGCAGCATGACGACCGAGGGTTGCGGCA
* * * ** *
3331052 GCACATGTTGGGCTCAGGCATGTGTTCGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCAGAG
448 GCACATGCTGGGCTCAGGCAAGTGCTCGTGCCACATTTTTCTTCCTCGGGGCACCATCACCAGAG
* * * * *
3331117 CATCGTTGGAGAACCTGATCGACGGCAGTGGGGTTCCGATGATCGGGGGGGC-C-AGGGGGGTGT
513 CATCATCGGAGAACCTGACCGACGGCAGTGAGGTTCCGACGATC-GGGGGGCTCGA-GGGGGTGT
*
3331180 GCGCACATGATGTGTGATGGGTGCTGGTACCTAGCCCTTATATTGGCCCCCTATCACACATCAAA
576 GCGCA-ATGATGTGCGATGGGTGCTGGTACCTAGCCCTTATATTGGCCCCCTATCACACATCAAA
* * * *
3331245 CCTCTAGAACTCGCACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATT
640 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCAATT
* * * *
3331310 AAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCTAGTTTTTA
705 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
3331375 GCTGAAATTTTTTGTGCATGCCAA
770 GCTGAAATTTTTTGTGCATGCCAA
3331399 AAAAAATACA
Statistics
Matches: 703, Mismatches: 80, Indels: 39
0.86 0.10 0.05
Matches are distributed among these distances:
807 1 0.00
808 119 0.17
809 203 0.29
811 1 0.00
814 1 0.00
819 1 0.00
821 1 0.00
826 175 0.25
828 1 0.00
829 2 0.00
830 3 0.00
832 2 0.00
833 2 0.00
834 191 0.27
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.26
Consensus pattern (808 bp):
AAAATCGTGAAAAACAGAAAATGAGTCGTCTTGACATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
CCACCCACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCTGGTGTAACGCCCACC
CGCCTGCCCACTCGTTTCATCGGTTGGCTAAGGCATACGGAGTTCACTCCCAGTCTAAGATCAGA
CCAGACCGAGGGTTGCAACAGTAGGATCGACAGCACACAGAGGGGGACCCGATCGATCCCCGACT
TGCGCATCCCACCCCTCTGGCCGGCTAAGCACCCCCAAGCTCGTTTCATGGGTTGACTTAGGCAT
ACGGAGTTCACTCCCAATCTAAGCATACGAGCAGCATGACGACCGAGGGTTGCGGCAGCACATGC
TGGGCTCAGGCAAGTGCTCGTGCCACATTTTTCTTCCTCGGGGCACCATCACCAGAGCATCATCG
GAGAACCTGACCGACGGCAGTGAGGTTCCGACGATCGGGGGGCTCGAGGGGGTGTGCGCAATGAT
GTGCGATGGGTGCTGGTACCTAGCCCTTATATTGGCCCCCTATCACACATCAAACCTCGAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCAATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAAATTTT
TTGTGCATGCCAACAGTAAAAAGTTTCA
Found at i:3331909 original size:26 final size:26
Alignment explanation
Indices: 3331873--3331925 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3331863 GTTGACTTAG
3331873 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
3331899 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3331925 G
1 G
3331926 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:3332783 original size:26 final size:26
Alignment explanation
Indices: 3332753--3332831 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
3332743 GTTGACTTAG
3332753 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
** *
3332779 GCATAAAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
3332805 GCATACGGAGTTCATTCCCTATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3332831 G
1 G
3332832 ATCAGACCGG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:3333708 original size:26 final size:26
Alignment explanation
Indices: 3333672--3333724 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3333662 CTTGACTTAG
*
3333672 GCATATGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
*
3333698 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
3333724 G
1 G
3333725 ATTGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:3334610 original size:26 final size:26
Alignment explanation
Indices: 3334574--3334626 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3334564 CTTGACTTAG
*
3334574 GCATATGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
*
3334600 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
3334626 G
1 G
3334627 ATTGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:3335513 original size:26 final size:25
Alignment explanation
Indices: 3335476--3335526 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
3335466 TTGACTCAGA
*
3335476 CATACAAGTTCATTCCTAGTCTAAG
1 CATACAAGTTCATTCCCAGTCTAAG
3335501 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACA-AGTTCATTCCCAGTCTAAG
3335527 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (25 bp):
CATACAAGTTCATTCCCAGTCTAAG
Found at i:3336396 original size:26 final size:26
Alignment explanation
Indices: 3336360--3336412 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3336350 GTTGACTCAG
3336360 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3336386 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3336412 G
1 G
3336413 ATCGGCCCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:3340003 original size:26 final size:26
Alignment explanation
Indices: 3339967--3340019 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3339957 GTTGACTTAG
*
3339967 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3339993 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3340019 G
1 G
3340020 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3342661 original size:26 final size:26
Alignment explanation
Indices: 3342625--3342677 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3342615 GTTGACTTAG
3342625 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* **
3342651 GCATACGGAGTTGATTGTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3342677 G
1 G
3342678 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3344443 original size:26 final size:26
Alignment explanation
Indices: 3344414--3344465 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
3344404 GTTGACTTAG
* *
3344414 GCATACGGAGTTTATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3344440 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3344466 TATTGGACTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3345360 original size:26 final size:26
Alignment explanation
Indices: 3345320--3345372 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3345310 GTTGACTTAG
* *
3345320 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGCTCATGCCCAGTCTAA
*
3345346 GCATACGGAGCTCATGCCCAGTCTAA
1 GCATACGAAGCTCATGCCCAGTCTAA
3345372 G
1 G
3345373 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGAAGCTCATGCCCAGTCTAA
Found at i:3346250 original size:26 final size:26
Alignment explanation
Indices: 3346214--3346266 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3346204 GTTGACTTTG
3346214 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3346240 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3346266 G
1 G
3346267 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3347896 original size:901 final size:901
Alignment explanation
Indices: 3330999--3347891 Score: 21719
Period size: 894 Copynumber: 18.8 Consensus size: 901
3330989 GTTGTTTTAG
* * * *
3330999 GCATACGGAGTTCACTCCCAGTCTAAGATCAGA-CTAGACCGAGGGTTGCGGCAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * ** * **
3331063 GCTCAGGCATGTGTTCGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCGTTGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * *
3331128 AACCTGATCGACGGCAGTGGGGTTCCGATGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * * * * * *
3331193 GTGATGGGTGCTGGTACCTAGCCCTTATATTGGCCCCCTATCACACATCAAACCTCTAGAACTCG
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
3331258 CACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
3331323 TGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCTAGTTTTTAGCTGAAATTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
3331388 GTGCATGCCAAAAAAAATACAAGGATCACATCTACGAAGTTTGGGGCCAAAACTCCTTCCAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* * * * *
3331453 AATTTTGAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCT
453 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
3331518 TGCCGTGAAACTTAATGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
3331583 ATTGGCCCATAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTGTCGATCCACGACTTGT
583 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
3331648 GCATCCCATCTCTCTGGCCAGCGTAGTGCCCGCCCG--C-CTGCCCGCTCGTTTCATCGGTTGGC
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * * *
3331710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGGACCGAGGGTTGCAGTAGGAGGATC
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGGATC
* * * *
3331775 GGTAGCACACAGAGCGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
778 GGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
3331840 GCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
843 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
3331899 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACC-AGACCGAGGGTTACGGCAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCACATGCTGG
* * *
3331963 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCAGGG-ACCA---T-----CAT---C-GAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAG
** * * *
3332015 AACCTGACCGGTGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGTGTGCGCACAAGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
3332080 CGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
3332145 GCCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCGAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
3332210 -GGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTTC-AGTTTTTAGCTGAATTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
3332273 ATGCATGCCGA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTTCCAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* * *
3332337 AATTTTAAAAAATCCCGAACAGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGCCT
453 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
3332402 TTCCATGAAACTTCGCGTGAAGGCTTAACGGACCACTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
3332467 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
583 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
3332532 GCATCCCATCTCTTTGGCTGGCATAGT---C-CCCG--C-CTGCCCGCTCGTTTCGTTGGTTGGC
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGC
** * *
3332590 TTAGTTATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCAGCAGCAGGATT
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGGATC
* * * * * * ** * *
3332655 GGTAGCACACGGAGGAGGACCC-GACGGATCCTCGATTTGTGCATCCCTCCCCTCTGGCCGGCTG
778 GGCAGCACGCAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
3332719 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
842 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
**
3332779 GCATAAAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCTATCTAAGATCAGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G----------A-C------C-GA----AC
* * * * *
3332844 CGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGAGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
* ** *
3332909 ---CA-C--C--AGCATCGTCGGAGAACCTGACCGACGAAATTGGGGTTCCGACGATCGGGGGTC
105 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGC
* * *
3332966 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCTTATC
170 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
3333031 CCTAATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCC
235 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
3333096 AGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTT
300 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * ** *
3333161 TGAGTTTTTAGCTGAATTTCTTTGTGCCGGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTT
365 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
3333226 GGGGCCAAAACTCCTTTCG-AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGT
430 GGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGT
* *
3333290 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTTTATG
495 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
3333355 AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGCTGTGCCTAAACCCACCTAC
560 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
3333420 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCACC
625 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-GC
* * * *
3333485 CGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATCGAACCGG
689 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* * * ** * * *
3333550 ATCAAGGGTTGCGACAGTAGGATTAGCAGCACGCAGAAGGGGACCCGATCGATCCCCGGCTTACG
754 ACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCG
* * * *
3333615 CATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCATTTCGTGGCTTGACTTAGGCATATGG
819 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
*
3333680 AGTTCATTACCAGTCTAA
884 AGTTCATTCCCAGTCTAA
* * *
3333698 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACC-AGACCGAGGGTTGCGGCAGCAAATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * *
3333762 GCTCGAGCATGTGCTGGTGCCCCATTTTTCATT-GTCAGGGCACCATTGTCGGAGCATCGTCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCGCCGGGGCACCATCGTCGGAGCATCGCCGGA
*
3333826 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGT
*
3333891 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
3333956 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
3334021 TGGGGACACTTTTTTCTAATGGTCACAAAATCTTGTACAGTTCAAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
3334086 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG-AAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
*
3334150 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCT
453 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
3334215 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
3334280 ATTGGCACGTAGAAATATGAAGCTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
3334345 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCGTTCGTTTCGTTGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGG
* * * * *
3334410 CTTAGGCATACGGAGTTCATTCCCAGTCTATGATTGAACTAGACCAAGGGTTACGGCAGCAGGAT
712 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGGAT
* * ** ** *
3334475 TGGCAGCACGCAGAAGGGGACTTGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTG
777 CGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * *
3334540 AGTGCCCGCACGCTCGTTTCGTAGCTTGACTTAGGCATATGGAGTTCATTACCAGTCTAA
842 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
3334600 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACC-AGACCGAGGGTTGTGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
3334664 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCATCGAAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAG
* *
3334729 AACCTGATCGACGGCATTGGGGTTCCGACGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGC
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
3334794 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
3334859 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * *
3334924 GGGACACTTTTTTCTAATGGTCACAAAATCTTGTACA-GTCTGATTTTTTAGCTGGATTTTTTTA
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTG
* *
3334988 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTTCTTTCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * ** * *
3335053 ATTTTAAGAAATCCCGAACCAAAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
3335118 GCCATGAAACTTCACGTGAAGG-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
3335182 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCCTGCA
584 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
3335247 CATCCCGTCGCTCTGGCCCTGCATA-TGGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTTGGTTG
649 CATCCCGTCTCTCTGG-CCGGCGTAGT-GCCCGCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTG
* * * * ** * *
3335311 GCTTAGGCATACGAAGTTCATTCCCAG-CTAAGATTGAACCGGACTGAGGGTTGTGGCAGCAAGA
711 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGGA
* * ** * * * **
3335375 TCGACAGCACGCAGAGGGGGACTCGACCGATCCCCGGCTTGCACAGCCCGCCCCTCCGGTTGGCT
776 TCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * * *
3335440 GAGCACCCGCATGCTCGTTTCGTGGGTTGACTCAGACATAC-AAGTTCATTCCTAGTCTAA
841 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
3335500 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACAGTAGCACATGCTGTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
3335565 CTCGAGCAGGTGCTGGTGTCGCATTTTTCTTCGTCGAGG---CA----C----CATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
3335619 ACCTGACC-AGCGGCATTAGGGTTCCGATGATCGGGGGGCCGGGGGGGTGTGCGCACATGACGTG
131 ACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* ** **
3335683 CGGTGGGTGCTGGTACTTATCCCTTATATTGGCCCTTTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
3335748 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
3335813 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTATG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
3335878 TGTATGCCAACAAAAATACAAGGATCACATCTACCAAGTTAGGGGCCAAAACTCCTTTCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* ** * * * *
3335943 CTTTTAAAAAATCTTAAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAAAAAATGAGTCATCTT
454 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
3336008 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAGTTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * **
3336073 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTGCCACGTTATCGATCCACGGCTTGCG
584 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** *
3336138 CATCCCGTCTCTCTAGACGATGTAGTGCCCGCCCG--C-CCGCCCGCTCGTTTCGTCAGTTGGCT
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCT
*** ** * * * *
3336200 TAGGCATATATAGTTCATTCCCAG-CTAAGATTAGATCAGATCAAGGGTTACGACAGCAGGATCG
714 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGGATCG
** * * * ** * *
3336264 ATAGCATGTAGAGGGGGACCC-GACGATCCCCGATTTGCGTAGCCCGCCCCTCTGGCCGGCTGAG
779 GCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
3336328 CGCCCGCACGCTCGTTTTGTGGGTTGACTCAGGCATACGAAGTTCATTCCCAGTCTAA
844 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
3336386 GCATACGAAGTTCATTCCCAGTCTAAGATCGG-CCCAGACCAAGGGTTGCAGG-AGCACAAGTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGC-GGCAGCACATGCTG
* * * * * *
3336449 GGCTTGAGCTTGTGCTGGTGCCGCATTTTT-TTCCCCGAGGCACCATCGTCGGAGCATCGTCGGA
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGA
* * *
3336513 GAACCTGACCGATGGCATTGGGGTTCCGACGATCGGGCGGGCTGGGGGGTGTCCGCACATGATGT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGTGTGCGCACATGATGT
* * * * *
3336578 GCAATGGATGCTAGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
3336643 CACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTACCAGTAG-CATTCGAAAAAAGTGTC
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-----AAAGTGTC
*
3336707 TGAAATGGGGACACTTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
318 TGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * *
3336772 TTTTTTATGCATGCCAAGAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCC-TT
382 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT
* * * * * * *
3336836 CTGAATAAATTTTAAAAAATCCCAAATCGGAAAAAAATTTCAAAAATCGTGAAAAATAAAAAACG
447 C-GAAAAAATTTTAAAAAATCTCGAA-CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
3336901 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
510 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * * *
3336966 AAAATGGCATTGGCATGCAGAAATGTGAAGATGTGCATAAACCCACCTACCACCCTATCAATCCA
575 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * * * * *
3337031 TGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACTCGCCCACCCGCGCACTTGTTTCG
640 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-GCCGCCCGCTCGTTTCG
* * * * *** * *
3337096 TCGGTTGGCTTAGGCACACAGAGTTCATTCCCAGTCTAAGATCTGACCGGATTGAGGGTTGCAGT
704 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGC
* * * * * * *
3337161 AGCAGAATCGACAGCGCACAGAGGGGGACCCAGTCGATCCTCGGCTTGTGCATCCCGCCCCTCTG
769 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * *
3337226 GCCAGCTGAGCG-CCTCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
834 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
3337290 TAA
899 TAA
* * * * ** * * * *
3337293 GCATACGGAGTTCTTTCCC-GATATAAAATTGGATTGGATCAAGGGTTGCGGCAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAG-TCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGG
* * ** * *
3337357 GCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCTGGGCACCATCACCGAAGCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * *
3337422 AACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGAGGGTCGGGGGGTGTGCGCAAATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGTGTGCGCACATGATGTG
* * *
3337487 CAATGGGTGCTGGCACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
** * * * *
3337552 TTCCCCTTCAAGAGCATTTAAGATTTTACAGGTTTGCTGCTAGTAGCCACTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
3337617 GGGGACACTATTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAACTGAATTTTTTT-
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** *
3337681 TGCATGCCAACTAAAATACAAGGATCACGTCTATCAAGTTTGGGGTGAAAATTCC-TTCTGAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAA
* * * * **
3337745 AATTTTAAAAATTCTTGAACAGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
3337810 TGCCATGAAGCTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGACATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * * ** *
3337875 ATTGGCACACAGAAATAAGAAGACGTACCTAAACCCACCTACCACCCTATCGATCCATTGCTTGT
583 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *** *
3337940 GCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGTCCGTCTGTTTGCTCGTTTCATCGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGG
* * * * * * * *
3338005 CTTAGGCATACAGAGTTTATTCCAAGTCTAAGATCGAACCGGACTGAA-GGTTGCGGTAGCTGGA
712 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC-CAAGGGTTGCGGCAGCAGGA
** * * ** *
3338069 TTAGCAACACACAGAGGGGGACCCGGTCGATCCCCGAG-TTGTACATCCCGCCCCTCTGGCAGGC
776 TCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCG-GCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
3338133 TGAGCACCCGCACGCTCGTTTCAT-GGTTGACTTAGGCATATGGAGTTCATTACCAGTCTAA
840 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
3338194 GCATACAGAGTTCATTGCTAGTCTAAGATTGAACC-AGACCGAGGGTTGCTGCAGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * *
3338258 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGTACCATCGCCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAG
* *
3338323 AACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGCCTGGGAGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * * *
3338388 CAATGGGTGCTGGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATGAAACATCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * **
3338453 ACCCCCTTAAAGAGCATTTGAGATTGTACTGGTTTGCGGCCAGTAGCCACCAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
3338518 GGGAACACTTTTTTCAAATGGTCAC-AAATCCTTGTACACTTTGAGTTTTTAGCT-AATTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAAT-CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
3338581 ATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTAGGGCCAAAAC-CCTTGCAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* * * *
3338645 AATTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGT-ATCT
453 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
3338709 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATAAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
3338774 ATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
583 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
3338839 GCATCCCATCTCTCTAGCCGAG-GTAGTGCCCG-CCG---TCCGCCCTCTCATTTCGTCAGTTGG
648 GCATCCCGTCTCTCTGGCCG-GCGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * * * * * *
3338899 CTTAGGCATACAGAGTTCATTCCTAGTCTAAGACCGGATCAGATCGAGGGTTGTGACAACTGGAT
712 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGGAT
* * ** * * * *
3338964 CCGTAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTACGCATCTCGCCCCTCTAGCCGGCTG
777 CGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* ** * *
3339029 AGCGCCCGCTCGCTCGTTTCACGGGTTGACTTAGGCATATGGATTTCATTCCCAGTCTAA
842 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * **
3339089 GCATACAGAGTTCGTTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
3339154 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
** * * * * **
3339219 ATTTGACCGGCGGCATTAGGATTTCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG-
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
3339283 TACTGGGTGCTGGTACTTGGCCCTTATACTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCAC
195 GA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
3339348 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG-TCGCCAGTAACCATTAAATTGTATGAAA
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTGAAA
*
3339412 TGGGGACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
3339477 GTGCAAGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAACTCC-TTCTGAA
388 GTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAA
* * * * * *
3339541 AAAATTTTAAAAAATCCCAAACTGCAAAAAGTTTTCGAAAATCATGAAAAATAGAAAACGAGTCG
451 AAAATTTTAAAAAATCTCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
3339606 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** *
3339671 GGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
580 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * *
3339736 TGCGTATCCCCTTTCTCTGGCCGGTGTAGTGCCCACCCGCCCGTCCGCCCGCTTGTTTTGTCGGT
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCCCGCTCGTTTCGTCGGT
* ** *
3339801 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGGCAGCA-
709 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAG
* * * * * *
3339865 GATTGGCAGCACACAGAGGGGGACCCGATCGAACCTCGGCTTGCACATCCCGCCCCTC-GGCCGG
774 GATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* *
3339929 CTGAGCACCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
839 CTGAGC-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
3339993 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
3340058 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
3340123 ACCTGACCGACGGCATTGGGGTTTCGACGAT--------CAGGGGGTGTGCACACATGATGTGCG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
3340180 ATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
3340245 CCCCTGAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
3340310 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * * *
3340375 CATGCCAACAAAAATACAAGGATAACGTCTACTAAGTTTGGGGTCAAAACCCCTTCCAAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
* * *
3340440 TTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
456 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * *
3340505 CATGAAACTTCATGTGAAGGCTTAAGGGAGCATTCTATGAATTTACAAGCCATAAAAATGGCATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** * * * *
3340570 GGTGCATAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTAACTATCCACGGCTTGCGCA
586 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * * * *
3340635 TCCCCTCTCTTTGGCCGACGTAGTGCCCGTCGGCTCGTCCGCCCTCTCGTTTCGTCGTTTGGCTT
651 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * *
3340700 ACGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCAAGGGTT-----A-C-GG-T-AG
715 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGGATCGG
* * * * *
3340756 CA-CACG--GA-GGGGACCCAG-CTGATCCCCGACTTGCACATCCCACCCCTCTGCCCGGCTGAG
780 CAGCACGCAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
3340816 CCCCCGCTCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCGAA
844 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
3340874 GCATACAGAGCTCTTTCCCAGTCTAAGATCAGACC-AGACCGAGGGTTACGGCAGAACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
3340938 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCAGGGCACCACCATCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAG
*
3341003 AACCTGACCGACGGCATTGGGGTTCCGACGAT--------CGGGGGGTGTGCGCACATGATGTTC
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
3341060 GATGGGTGCTGGTACTTGGCCCTGATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * **
3341125 CCCCCTTAAAGAGTATTTGAGATTTTATAGGTTTGCTGCCAGTAGTAATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
3341190 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
3341255 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
* ** * *
3341320 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAAGCGTGACAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
3341385 CCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
3341450 TGGCATGTAGAAATATGAAGATGTTCCTAAACCCACCTATCACCCTAACTATCCACGGCTTGCGC
585 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * * *
3341515 ATCCCCTCTCTCTGGCCGACGTAGTGCCCGTCGGCTCAC-CCACCCTCTCGTTTCGTCGATTGGA
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC-C-CGCCGCCCGCTCGTTTCGTCGGTTGGC
** * *
3341579 TTCTGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCAAGGGTT-----A-C-GG-T-
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGGATC
* * *
3341635 AGCA-CACG--GAGGGGGACCCAG-CTGATCCCCGGCTTGCACATCCCGCCCCCTCTGGCCGGCT
778 GGCAGCACGCAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCG-CCCCTCTGGCCGGCT
* * *
3341696 GAGCCCCCGCTCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCGAA
841 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
3341757 GCATACGGAGTTCTTTCCCAGTCTAAGATCGGACC-ACACCAAGGGCTGGGGCAGAACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * * *
3341821 GCTCGGGCATGTGCTGGTGGCGTATTTTTCTTCACCAGGGCACTACCATCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * *
3341886 AACCTGACCGACGGCATTGGGGTTTCGACGAT--------CGGGGGGTGTGTGCACATGATGTTC
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
3341943 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
3342008 CCCCCTTAAAGAGTATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
3342073 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * *
3342138 GCATGCCAACAAAAATACAAGGATAACGTCTACTAAGTTTGGGGTCAAAACCCCTTCCAAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
* * *
3342203 TTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
3342268 CCATGAAACTTCATGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
3342333 TAGCACGTCA-AAATATGAAGATGTTCCTAAACCCACCTACCACCATATCTATCCACGGCTTGCG
585 TGGCACGT-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
3342397 TATCCCCTCTCTCTGGTCGGCGTAGTGCCCGCCGGCCCGCCCGCCCGCTCGTTTCGCCGGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGGC
* * *
3342462 TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCGGCAGCAGGATC
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGGATC
** * * *
3342527 GGCAGCACATAGAGGGGCACCCGGTCGATCCCCGGCTTGCGCATCCCACCCTTCTGGCCGGCTGA
778 GGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
3342592 GTGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * ** * * * * * *
3342651 GCATACGGAGTTGATTGTCAGTCTAAGATCGGATCGAAATGATGGTTACAGTAGAACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
3342716 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
*
3342781 ACCTGACCGACGGTATTGGGGTTCC-AGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGA-CGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * * *
3342845 TGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATGAAACCTCGAGAACTCAT
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
3342910 AGCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAATAGCAATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
3342975 GTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
3343040 TGCATGCCAGA-AAAAATAGAAGGATCATGTCTAACAAGTTTGGGGCCAAAACACCTTCCGAAAA
389 TGCATGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* * *
3343104 AATTTTAAAAATTCTCGAACCGTAAAAATTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
3343169 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
3343234 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCATGACTTGC
583 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
3343299 GCATCCTGTCTCTCTGGCCGGCATAGT----GCCCG--C-CCGCCCGCTCGTTTCGTCCGTTGGC
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGC
* * * ** * *
3343357 TTAGGCATACGGAGTTCTTTCCCAGTCTAAGATCAGACCAGACTAAGGGTTGCGGTTGTAGGTTC
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGGATC
* * ** * * * * * **
3343422 GGCAGTATGCAGATAGGGACTCGTTCGATCCCCGGCTTACGCATCCCGCCCCTTTCGTTGGCTGA
778 GGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
3343487 GCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * *
3343546 GCAAATGGAGTTCATGCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * ***
3343611 CTCGGGCAAGTACTGGTTTCGCATTTTTCTTCGCCGGGGCACCATCGTCAGAGCATCATTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
3343676 ACCTAACCGACGGCATTGAGGTTTCGACGATCGGGGGGGTCGGGGGGGTGTGGGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGG-CCGGGGGGTGTGCGCACATGATGTG
*
3343741 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * **
3343806 ACCCCCTTAAAGAGCATTTGATATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCCAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
3343871 GGGGACACTTTTTTCATATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTAAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
3343936 TGCATGCCAA-TAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTGGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG-AAAA
* * * *
3343999 AATTTTGAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCATG-AAAATAGAAAATGAGTCGTCT
453 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
3344063 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
3344128 ATTGGCATGCAGAAATATGAAGATGTGCCTAGACCCACCTACCACCCTATCGATCCACGACTTGC
583 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* **
3344193 GCATCCCGTCTCTCTGGCCGGCATAGT----GCCCG--C-CCGCCCGCTCGTTTCGTCTATTGGC
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGC
* ** * * *
3344251 TTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTACGGTAGCAGGATC
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGGATC
** * * * * * *
3344316 AACAGCACGCAAAAGGGGACTCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGA
778 GGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
3344381 GCGCTCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTTATTCGCAGTCTAA
843 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
3344440 GCATATGGAGTTCATTCCCAGTCTAATATTGGA-CTAGACCGAGGGTTGCAGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCACATGCTGG
* * * ** *
3344504 GCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGCCTGGGCACCATCACCGTAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * *
3344569 AACCTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGCGGGGGGGTGTGCGCACATGATGT-C
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
3344633 TGATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 -GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
3344698 ACCCCCTTAAAGAGCATTTGAGAGTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
3344763 GGGGACACTTTTTTTAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
3344828 TGCATGCCAATAAAAATACAAGGATCATGTCTACCAGGTTTGGGGCAAAAATTGCC-TCCGAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTTCGAAAA
* * * * *
3344892 AATTTTAAAAAATC-CTAAACCGCAAAAAGTTTCAAAAAT-GAAGAAAAATAGAAAACGAGTTGC
453 AATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCG-TGAAAAATAGAAAACGAGTCGT
3344955 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
3345020 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
3345085 GCGCATCCCGTTTCTCTAGCCGGCGTAGTGCCCGCCTGCCCACCCGCCCGTCCGCTCGTTTCGTC
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCG-CCGCCCGCTCGTTTCGTC
* * * * *
3345150 GGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTATGATCAGACC-GAACTAAGGGTTGTGGCA
706 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCAAGGGTTGCGGCA
* * * * ** *
3345214 GCAGGATTGGTAGTATGCAGATAGGGACCCGGTCGATCCCCGGCTTACGCATCCCGCCCCTCTGG
770 GCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
** * *
3345279 TTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCT
835 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
3345344 AA
900 AA
* * ** * * *
3345346 GCATACGGAGCTCATGCCCAGTCTAAGATCGGATTGGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
3345411 CTCGGGCAAGTACTGGTTCTGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
3345476 ACCTAACCGACGGCATTGGGGTTCCGATGATCGGGGGGGTCGGGGGGGTGTGGGCACTTGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGG-CCGGGGGGTGTGCGCACATGATGTG
3345541 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * **
3345606 ACCCTCTTAAAGAGCATTTTAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCCAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
3345671 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTAAACTTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTT
* * * *
3345736 GTGCATGTCAA-TAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTT-GAAAG
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA-
* * *
3345799 AAATTTAAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCGTG-AAAATAAAAAACGAGTCGTC
452 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
3345863 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
3345928 CATTGGCACACAGAAATATGAAGATGTGACTGAACCCACCTACCATCCTATCGATCCACGGCTTG
582 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
3345993 CGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCG--C-CCGTCCGCTCGTTTCATCGGTTGG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGG
* * * * *
3346051 CTTAGG-ATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTTGCGGCAGTAGGAT
712 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGGAT
** *** * *
3346115 CGGCAGCACATAGAGGGGGACCCAACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTG
777 CGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
3346180 AGCGCACGCACGCTCATTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAA
842 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
3346240 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCAGCAGCACAT-CTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGC-TGG
* * * *
3346304 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCAGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * * *
3346369 AACCTGACCGGCGACATTGGGATTCC-AGTGATCGGGGGGCCGGGGGGTGTGTGCACACATGATG
130 AACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGCC-GGGGG-GTGTGCGCACATGATG
* * *
3346433 TGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAATCTTGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
3346498 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCT-AA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
3346562 CATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTT
322 -ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
3346626 CTGTGCATGCCAACCAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* * * * * *
3346691 AAAATTTTCAAAAGTCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAACAAAAAACGAGTCGT
451 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
3346756 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * * *
3346821 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTTCCACCCTATCGATCGAAGGCTT
581 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
3346886 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCACGCCCGCCCGCCCGCTCGTTTCGTCGATT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTT
* ** * * * ** *
3346951 GGCTTGGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGCGGTTGTAGG
710 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGG
* ** * **
3347016 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGTACCTCTTGCCGAA
775 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * **
3347081 TGAGCACCCGCACGCTAGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAA
840 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
3347143 GCATACGGAG-TCTTTCCCAATCTAAGATCGGACCGAATCGAGGGTTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
3347207 CTTGGGCATGTGCTGGAGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* *
3347272 ACCTGACC-AGCGGCATTGTGGTTCCGACGATCGAGGGGGCCGGTGGGGTGTGCGCACAAGATGT
131 ACCTGACCGA-CGGCATTGGGGTTCCGACGATCG-GGGGGCCGG-GGGGTGTGCGCACATGATGT
* * * *
3347336 GCGGTGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
3347401 CACCCTCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
3347466 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAA-TTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
3347530 GTGCATGCCAA-AAAAAAACAAGGACCATGTCTACCAAGTTTAGGGCCAAAACTCCTTTCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* ** *
3347594 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCT
453 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
3347659 TGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
3347724 ATTGGCACGTAGAAATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCGACGGCTTGC
583 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
3347789 GCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGTCCGCCTGCGCGCTCGTTTCGTGGGTTGA
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC-GCCCGCTCGTTTCGTCGGTTGG
*
3347854 CTTAGGCATACGGAGTTCATTCCCAGTCTAATATCGGA
712 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
3347892 TCGGATCGAC
Statistics
Matches: 14148, Mismatches: 1610, Indels: 469
0.87 0.10 0.03
Matches are distributed among these distances:
879 2 0.00
880 219 0.02
881 807 0.06
882 47 0.00
883 772 0.05
884 250 0.02
885 145 0.01
886 325 0.02
887 42 0.00
888 6 0.00
889 46 0.00
890 348 0.02
891 122 0.01
892 234 0.02
893 491 0.03
894 1733 0.12
895 1034 0.07
896 404 0.03
897 51 0.00
898 41 0.00
899 188 0.01
900 457 0.03
901 1718 0.12
902 1637 0.12
903 697 0.05
904 269 0.02
905 72 0.01
906 419 0.03
907 351 0.02
908 487 0.03
909 22 0.00
910 149 0.01
911 303 0.02
912 45 0.00
914 1 0.00
915 3 0.00
916 1 0.00
917 1 0.00
918 2 0.00
919 206 0.01
920 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGGATCGGC
AGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:3354899 original size:26 final size:26
Alignment explanation
Indices: 3354869--3354921 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3354859 GTTGACTTGG
3354869 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3354895 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3354921 G
1 G
3354922 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3355826 original size:26 final size:26
Alignment explanation
Indices: 3355790--3355842 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3355780 GTTGACTTAG
*
3355790 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3355816 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3355842 G
1 G
3355843 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3357128 original size:26 final size:26
Alignment explanation
Indices: 3357098--3357150 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3357088 GTTGACTTAG
*
3357098 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
*
3357124 GCATAAGGAGTTCATTGCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
3357150 G
1 G
3357151 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:3358820 original size:717 final size:716
Alignment explanation
Indices: 3357124--3359000 Score: 2800
Period size: 718 Copynumber: 2.6 Consensus size: 716
3357114 CCCAGTCTAA
* * * * * * * *
3357124 GCATAAGGAGTTCATTGCCAGTCTAAGATCAGATCGGACCGAGGGTTGCAACAGCAAATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTTCGACAGCACATGCTGGG
* * * * * *
3357189 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGTACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGTCGGAGA
* * * * * * * * * *
3357254 ACCTT-ACCGACCGCATTGGGGTTCCGACGATCGGGGGGGCCAGGTGGGTGTGCGCACATGATGT
131 A-CTTGACTGGCAGCATTGTGGTTCCGGCGAT-TGGGGGG-CTGGGGGGTGTGTGCACATAATGT
* * * * *
3357318 GTGATGGATGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
3357383 CACCCCCTTAAAGGGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC-GTAGCCATTAAAGTTTCTGAAA
3357448 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTATTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT-TTT
* * *
3357513 TGCGCATGCCAAGAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACT-CTTATCAAA
386 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTATCAAA
*
3357577 AAAATTTTAAAAAATACCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
451 AAAATTTTAAAAAATACCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
3357642 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAACCATAAAAATA
* * * * *
3357707 GCATTGGCATGCAGAGATATGAAGTTGTGCCTAAACCCCCTACCACCCTATCGATCCACGGCTTG
581 GCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCCCTACCACCCTATCGATCCACAGCTTG
* * * * * * * ** *
3357772 TGCATCCTGTCTCTCTGGTCGGCGTAGTGCCCGCTCGCCCGCACGCCCGCTTGTTTCGTCGGTTG
646 CGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCACCCACACACCCACTCATTTCGTCAGTTG
3357837 GCTTAG
711 GCTTAG
* * * * *
3357843 GCATACAGAGTTCATTCCAAGTCTAAGATCAGACCAGACTGAGAGTTAT-GACAGCTCATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT-TCGACAGCACATGCTGG
* * *
3357907 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGCC-AGAGCATTGTCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGA-AGCATCGTCGGA
3357971 GAACTTGACTGGCAGCATTGTGGTTCCGGCGATTGGGGGGCTGGGGGGGTGTGTGCACATAATGT
129 GAACTTGACTGGCAGCATTGTGGTTCCGGCGATTGGGGGGCT-GGGGGGTGTGTGCACATAATGT
3358036 GCGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
3358101 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCGGTAGCCATTAAAGTTTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC-GTAGCCATTAAAGTTTCTGAAA
*
3358166 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
* **
3358231 GTGCATGCCAAAAAAAATACAAGGATCACGTCTAGCAAGTTTGGGGCCAAAACTCCTT-TTGAAA
387 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTATCAAAA
3358295 AAATTTTAAAAAAT-CTCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
452 AAATTTTAAAAAATAC-CGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
3358359 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATA
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAACCATAAAAATA
*
3358424 GCATTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
581 GCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCC-CCTACCACCCTATCGATCCACAGCTT
* * *
3358489 GCGCATCCCGTCTCTTTGG-CTGGCGTAGTGCCCGCCCACCTACCCACCCACTCATTTCGTCAGT
645 GCGCATCCCGTCTCTCTGGTC-GGCGTAGTGCCCGCCCACCCACACACCCACTCATTTCGTCAGT
*
3358553 TGGTTTAG
709 TGGCTTAG
* * * *
3358561 GCATACGGAGTTTATTCCCAGTCTAACATCGGACCAGACCGAGGGTTTCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTTCGACAGCACATGCTGGG
* * * *
3358626 CTTGGGCATGTGCTGGGGCCGCATTTTTCGTCGTCGGGGCACCATCGCCGAAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGTCGGAGA
3358691 ACTTGACTGGCAGCATTGTGGTTCCGGCGATTGGGGGGCTGGGGGGTGTGTGCACATAATGTGCG
131 ACTTGACTGGCAGCATTGTGGTTCCGGCGATTGGGGGGCTGGGGGGTGTGTGCACATAATGTGCG
*
3358756 ATGGGTGCTGGTACTTGGCCCTTATATTGCCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-
196 ATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
3358820 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGTAGCCATTAAAGTTTCTAAAATGAG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGTAGCCATTAAAGTTTCTGAAATGGG
*
3358885 GACACTTTTTTCAAATGGTCACAAAATCTTATACACTTTGAGTTTTTAGCTGAATTTTTTTGTGC
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGC
* *
3358950 ATGCCAACAAAAAA-ACAAGGATCATGTCTACCAAGTTTGGGGCGAAAACTC
391 ATGCCAA-AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
3359001 ATTCCCAGTC
Statistics
Matches: 1050, Mismatches: 97, Indels: 26
0.90 0.08 0.02
Matches are distributed among these distances:
715 128 0.12
716 45 0.04
717 306 0.29
718 442 0.42
719 129 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (716 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTTCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGTCGGAGA
ACTTGACTGGCAGCATTGTGGTTCCGGCGATTGGGGGGCTGGGGGGTGTGTGCACATAATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGTAGCCATTAAAGTTTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTATCAAAAAAAT
TTTAAAAAATACCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAACCATAAAAATAGCATT
GGCACGCAGAAATATAAAGATGTGCCTAAACCCCCTACCACCCTATCGATCCACAGCTTGCGCAT
CCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCACCCACACACCCACTCATTTCGTCAGTTGGCTTA
G
Found at i:3361017 original size:26 final size:26
Alignment explanation
Indices: 3360981--3361033 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3360971 GTTGACTTAG
3360981 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
3361007 GCATACGGAGTTCATTCTCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3361033 G
1 G
3361034 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3361860 original size:26 final size:26
Alignment explanation
Indices: 3361821--3361874 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
3361811 TGGGTTGACT
* *
3361821 TAGGCATACGGAGTTCATTCCTAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
3361847 TAGGCATACAGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
3361873 TA
1 TA
3361875 AGATCGAACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCCCAGTC
Found at i:3362746 original size:26 final size:26
Alignment explanation
Indices: 3362710--3362760 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3362700 TTGACTTAGG
*
3362710 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACAGAGTTCATTCCCAGTCTAAC
3362736 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
3362761 GATCGGACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAC
Found at i:3364089 original size:900 final size:896
Alignment explanation
Indices: 3361972--3365843 Score: 5011
Period size: 869 Copynumber: 4.3 Consensus size: 896
3361962 TCGGAGAACC
* *
3361972 TGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTCGTACT
1 TGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
3362037 TGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
65 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* **
3362102 TTGAGATTTTACAGATTTGCTGCCAGTAGTTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
130 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * *
3362167 ATGATCACAGAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAACAAAAAT
195 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTGTGCATGCCAATAAAAA-
* * *
3362232 CTTGTACACTTCGAGTTTTTG-TGCACGTCTACCAAGTTTGGGGCCAAAACACCTTTCGAAAAAA
258 ----TACA-----AG-----GAT-CACGTCTACCAAGATTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
3362296 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
308 TTTCAAAAAATCTCTAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTG
* ** * * *
3362361 CCATGAAACTTCACGTGAAGGCTTAAGGGGTCAGTGTATGAATTTACAAGCCATAAAAATGGCAT
373 CCATGAAACTTCACGTGAAGGCTTAAGCGACCATTCTATGAATTTACAAGACATAAAAATGGCAT
* * * *
3362426 TGGTACATAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCTCGGCTTGCGC
438 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
3362491 ATCCTGTCTCTC-GGTCGACATAGTGCTCGCCTA----TCCGCTCGTTTCATCGGTTGGCTTAGG
503 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGG
* *
3362551 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGACAG
568 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAG
** * * * * *
3362616 CACGCAGAGGGGGACCCAGTTGATCCCTGGCTTACACATCCCACCCCTCTGGCCGGTTGAACGCC
633 CACGCAGAGGGGGACCCAGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCAGCTGAACGCC
* ** *
3362681 CGCACGTTTC-TTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATACAGAG
698 CGCACG-CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAG
* **
3362745 TTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGATGGCACATGCTGGAATCGGGCATG
762 TTCATTCCCAGTCTAAGATCGGAC-GGACCGAGGGTTACGATAGCACATGCTGGGCTCGGGCATG
* * * * *
3362810 TG-TCGATGCCACATTTTTCTTCACCGGGGCACCA---T-----CA---CCAGAGAACTTGACCG
826 TGCT-GGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGAAGCATCGCCGGAGAACCTGACCG
*
3362863 ACGACAT
890 ACGGCAT
* * * *
3362870 TGGGGTTCCGATGATCGGGGGGTCGGGGGGTGGGCGCACATGATGTGCGATGGGTGTTGGTACTT
1 TGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
3362935 GGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCAAGAACTCACACCCCCTT-AAGAGCATT
66 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * * *
3362999 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTAAAATTGAGACACTTTTTTCAAA
131 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
3363064 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGGTGCATGCCAATAAAAATA
196 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTT-GTGCATGCCAATAAAAATA
* *
3363129 CAAGGATCACATCTACCAAGATTGGGGCCAAAACTGCTTCCGAAAAAATTTCAAAAAATCTCTAA
260 CAAGGATCACGTCTACCAAGATTGGGGCCAAAACTCCTTCCGAAAAAATTTCAAAAAATCTCTAA
* *
3363194 CCGTAAAATA-TTTCAAAAATCATGAAAAATAAAAAATGAGTTGTCTTGCCATGAAACTTCACGT
325 CCGTAAAA-AGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGT
*
3363258 CAAGGCTTAAGCGACCATTCTATGAATTTACAAGACATAAAAATGGCATTGGCACGTAGAAATAT
389 GAAGGCTTAAGCGACCATTCTATGAATTTACAAGACATAAAAATGGCATTGGCACGTAGAAATAT
3363323 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
454 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
*
3363388 CGACGTAGTGCCCGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
519 CGACGTAGTGCCCGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTC
* * * * * * * **
3363453 CCAGTCTAAGATCAGACTGGATTGAGGGTTACAGCAGCAGGATCGGTAGCACGTAAAGGTAGACC
584 CCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
* * * * * *
3363518 CGGCCGATCCTCGGCTTATGCCTCCCGCCCCGCTGGCCAGCTGAACGCCCGCACACTCGTTTCAT
649 CAGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCAGCTGAACGCCCGCACGCTCGTTTCAT
* * * * *
3363583 GGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCCAAGCATACGGAGTTCATTCCCAGTCAAAG
714 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAG
* * * * * * *
3363648 ATCAGACAGGACCAAGGGTTACGGTACCACATGGTAGGCTCGGGCATGTGCTGGTGCCGTATTTT
779 ATCGGAC-GGACCGAGGGTTACGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * *
3363713 TCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACCGGCGGCAT
843 TCTTCATCGGGGCACCATCGTCGAAGCATCGCCGGAGAACCTGACCGACGGCAT
* * *
3363767 TGGGGTT-CTAGCGATCGGAGGGGCCGTGGGGGTGTGCGCACATGATATGCGATGGGTGCCGGTA
1 TGGGGTTCCGA-CGATCGG-GGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
3363831 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTTGAGAAGTCACACCCCCTTAAAGAGC
63 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * * *
3363896 ATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAATGTTTGAAATGGGGACATTTTTTTC
128 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
3363961 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGGTGCATGCCAATAAAA
193 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTT-GTGCATGCCAATAAAA
* *
3364026 ATACAAGGATCACATCTACCAAGATTGGGGCCAAAACTGCTTCCGAAAAAATTTCAAAAAATCTC
257 ATACAAGGATCACGTCTACCAAGATTGGGGCCAAAACTCCTTCCGAAAAAATTTCAAAAAATCTC
* *
3364091 TAACCGTAAAATA-TTTCAAAAATCATGAAAAATAAAAAAGGAGTTGTCTTGCCATGAAACTTCA
322 TAACCGTAAAA-AGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCA
3364155 CGTGAAGGCTTAAGCGACCATTCTATGAATTTACAAGACATAAAAATGGCATTGGCACGTAGAAA
386 CGTGAAGGCTTAAGCGACCATTCTATGAATTTACAAGACATAAAAATGGCATTGGCACGTAGAAA
* * * *
3364220 TATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACAGCTTGCGCATCTCGACTCTCT
451 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
3364285 GGCCGGCGTACTGCCCG----CCCGCCCGCTCGTTTCA-CCGTTCGGCTTAGGCATACGGAGTTC
516 GGCCGACGTAGTGCCCGCCCACCCGCCCGCTCGTTTCATCGGTT-GGCTTAGGCATACGAAGTTC
* * **
3364345 ATTCCCAGTCTTAGAT-AGGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGTGCGCAGAGGG
580 ATTCCCAGTCTAAGATCA-GACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
* * * * * ** *
3364409 GGTCTCAGCCGATCCCCGGCTTGCGCATCTCGCCCCTTTGGCTGGCTGAACGCCCGCACGCTTGT
644 GGACCCAGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCAGCTGAACGCCCGCACGCTCGT
*
3364474 TTCGTGGGTTGAC-T-----TA---AG--------CA---T-A-C---C-GAGTTCATTCCCAGT
709 TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGT
** * *
3364513 CTAAGATCGGATCGGACCGAGGGTTGTGGTAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGC
774 CTAAGATCGGA-CGGACCGAGGGTTACGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * * *
3364578 ATATTTCTTCATCGGGGCACCATCG-CCAGAGCATCGCCTGAGAACCTAACCGACGGTAT
838 ATTTTTCTTCATCGGGGCACCATCGTCGA-AGCATCGCCGGAGAACCTGACCGACGGCAT
*
3364637 TGGGGTTCCGACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACT
1 TGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * * *
3364702 TAGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTTACACCCCCTTAAAGGGCAT
65 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
3364767 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTATTCAA
130 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * *
3364832 ATGGTCACAAAATCTCGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
195 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTGTGCATGCCAATAAAAAT
* * * * * * *
3364897 ACAAGGATCATGTCTACCAAGTTTGGGGCCGAAACACCTTCCAAAAAAATTTGAAAAAATCTCAA
259 ACAAGGATCACGTCTACCAAGATTGGGGCCAAAACTCCTTCCGAAAAAATTTCAAAAAATCTCTA
* * *
3364962 ACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
324 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * ** *
3365027 GAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTGGCACGTACAAATAT
389 GAAGGCTTAAGCGACCATTCTATGAATTTACAAGACATAAAAATGGCATTGGCACGTAGAAATAT
*
3365092 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCCGGC
454 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * * * *
3365157 CTACGTAGCGCCCGCCCGCCCGCCCGCCGGCTCGTTTCGTCGATCGGCTTAGGCATACGAAGTTC
519 CGACGTAGTGCCCGCCCACCCG--C-CC-GCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTC
* * * * * * *
3365222 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAACAAGATTGGCAGCACACAGAGGGG
580 ATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGG
* * * * *
3365287 GACCC-GACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCACCCACACGCTCGT
645 GACCCAG-CCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCAGCTGAACGCCCGCACGCTCGT
* * *
3365351 TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTATTTTAAGCATACAGAGTTCATTCCCAGT
709 TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGT
* * **
3365416 CTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTGGC
774 CTAAGATCGGA-CGGACCGAGGGTTACGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * * *
3365481 ATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCGT
838 ATTTTTCTTCATCGGGGCACCATCGTCGAAGCATCGCCGGAGAACCTGACCGACGGCAT
* * * *
3365540 TAGGGATCTCG-TGATCGGGGGGGCCGGGGGGTGTGCGCACATGATTTGCGATGGGTGCTGGTA-
1 TGGGGTTC-CGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
3365603 TTGGCCCTTATATTGGCCGCCTATCCCTCATC-AACCTTGAGAACTCACACCCCCTTAAAGAGCA
64 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
3365667 TTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
129 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * *
3365732 AATGGTCACAAGATTTTGTACACTTCGAGTTTTTAGTTGATTTATTTTGTGCATGGCAATAAAAA
194 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTT-TTTTGTGCATGCCAATAAAAA
* *
3365797 TACAAGGATCATGTCTACCAAGGTTGGGGCCAAAACTCCTTCCGAAA
258 TACAAGGATCACGTCTACCAAGATTGGGGCCAAAACTCCTTCCGAAA
3365844 TATGAAGATG
Statistics
Matches: 2605, Mismatches: 296, Indels: 143
0.86 0.10 0.05
Matches are distributed among these distances:
868 1 0.00
869 452 0.17
870 143 0.05
871 6 0.00
873 4 0.00
874 1 0.00
875 2 0.00
876 3 0.00
877 144 0.06
878 3 0.00
879 1 0.00
881 225 0.09
882 19 0.01
883 2 0.00
885 2 0.00
886 269 0.10
887 3 0.00
889 1 0.00
890 2 0.00
891 4 0.00
894 3 0.00
895 14 0.01
896 268 0.10
897 129 0.05
898 23 0.01
899 87 0.03
900 400 0.15
901 187 0.07
902 30 0.01
903 174 0.07
904 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
TGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGTGCATGCCAATAAAAATAC
AAGGATCACGTCTACCAAGATTGGGGCCAAAACTCCTTCCGAAAAAATTTCAAAAAATCTCTAAC
CGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
AGGCTTAAGCGACCATTCTATGAATTTACAAGACATAAAAATGGCATTGGCACGTAGAAATATGA
AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
ACGTAGTGCCCGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCC
AGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCA
GCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCAGCTGAACGCCCGCACGCTCGTTTCATGG
GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
CGGACGGACCGAGGGTTACGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
TCATCGGGGCACCATCGTCGAAGCATCGCCGGAGAACCTGACCGACGGCAT
Found at i:3365420 original size:26 final size:26
Alignment explanation
Indices: 3365368--3365420 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3365358 GTTGACTTAG
* * * *
3365368 GCATACGGAGTTCATTCCTATTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3365394 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3365420 G
1 G
3365421 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3366143 original size:26 final size:26
Alignment explanation
Indices: 3366114--3366166 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3366104 GTTGACTTAG
**
3366114 GCATACGGAGTTAATTCTTAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
* *
3366140 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
3366166 G
1 G
3366167 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:3366536 original size:738 final size:745
Alignment explanation
Indices: 3365086--3366577 Score: 2112
Period size: 738 Copynumber: 2.0 Consensus size: 745
3365076 TGGCACGTAC
*
3365086 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTC
* *
3365151 TCCGGCCTACGTAGCGCCCGCCCGCCCGCCCGCCGGCTCGTTTCGTCGATCGGCTTAGGCATACG
66 TCCGGCCGACGTA-CG-CCGCCCGCCCG-CCGCCGACTCGTTTCGTCGATCGGCTTAGGCATACG
* * *
3365216 AAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAACAAGATTGGCAGCACACA
128 AAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAACAAGATCGGCAGCACACA
*
3365281 GAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCACCCACACG
193 GAGGGGGACCCGACTGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCACCCACACG
* * * *
3365346 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTATTTTAAGCATACAGAGTTCATTC
258 CTCGTTCCATGGGTTGACTTAGGCATACGGAGTTAATTCCTAGTCTAAGCATACAGAGTTCATTC
*
3365411 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGT
323 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * *
3365476 GTGGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCGTT
388 GTCGCATTTTTCTTCCTCGGGGCACCA-C-TC-G-GCA-CA-C-GAGAACCTGACCGACAGCATT
* * *
3365541 AGGGATCTCGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATTTGCGATGGGTGCTGGTATTG
446 AGGGATCTCGCGATCGGGGGGGCCGGGGGGTGTGCGCACACGATGTGCGATGGGTGCTGGTATTG
* *
3365606 GCCCTTATATTGGCCGCCTATCCCTCATCAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTG
511 GCCCTTATATTGGCCCCCTATCCCTCATCAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
3365671 AGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
576 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
* * * ** *
3365736 GTCACAAGATTTTGTACACTTCGAGTTTTTAGTTGATTTATTTTGTGCATGGCAATAAAAATACA
641 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTATTTTGTGCATACCAAAAAAAATACA
* * *
3365801 AGGATCATGTCTACCAAGGTTGGGGCCAAAACTCCTTCCG
706 AGGATCACGTCTACCAAGGTTGGGACCAAAAATCCTTCCG
* *
3365841 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATCCCTTCTC
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTC
* * * * * *
3365906 TCTGGCCGGCGTA-G-TGCCCGCCCG-C-CC-ACTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
66 TCCGGCCGACGTACGCCGCCCGCCCGCCGCCGACTCGTTTCGTCGATCGGCTTAGGCATACGAAG
* * *
3365966 TTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGACAGCAAGATCGGCAGCACACAGAG
131 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAACAAGATCGGCAGCACACAGAG
* * * * * * *
3366031 GGGGACCCGA-TCGATCCCTAGCTTGCGTATCCCGCCCCTCTGGCCGGTTGAG-GCCCGCATGCT
196 GGGGACCCGACT-GATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCACCCACACGCT
* * * **
3366094 TGTTCCGTGGGTTGACTTAGGCATACGGAGTTAATTCTTAGTCTAAGCATATGGAGTTCATTCCC
260 CGTTCCATGGGTTGACTTAGGCATACGGAGTTAATTCCTAGTCTAAGCATACAGAGTTCATTCCC
* * * *
3366159 AGTCTAAGATCAGACCGGACCGAGGGTTGGGGCAGTACATGCTGGGCTTGGGCATGTGCTGGTGT
325 AGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGT
* * * *
3366224 CGCATTTTTCTTCACT-GGTGCACCA-TC-GC-CA-GAGAACCTGACTGACAGCATTGGGGTTC-
390 CGCATTTTTCTTC-CTCGGGGCACCACTCGGCACACGAGAACCTGACCGACAGCATTAGGGATCT
3366283 CGACGATCGGGGGGGCCGGGGGGGTGTGCGCACACGATGTGCGATGGGTGCTGGTACTTGGCCCT
454 CG-CGATCGGGGGGGCC-GGGGGGTGTGCGCACACGATGTGCGATGGGTGCTGGTA-TTGGCCCT
* *
3366348 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAATGAGCGTTTGAGAT
516 TATATTGGCCCCCTATCCCTCATC-AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
*
3366413 TTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCA
580 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCA
*
3366478 CAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT-TTTTGTGCATACCAAAAAAAATACAAGG
645 CAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTATTTTGTGCATACCAAAAAAAATACAAGG
*
3366542 ATCACGTCTACCAAGTTTGGGACCAAAAATCCTTCC
709 ATCACGTCTACCAAGGTTGGGACCAAAAATCCTTCC
3366578 AAAAAAATTT
Statistics
Matches: 661, Mismatches: 69, Indels: 31
0.87 0.09 0.04
Matches are distributed among these distances:
734 2 0.00
735 35 0.05
736 36 0.05
737 31 0.05
738 185 0.28
739 4 0.01
740 2 0.00
743 2 0.00
746 145 0.22
747 134 0.20
748 2 0.00
749 1 0.00
751 9 0.01
753 1 0.00
755 72 0.11
ACGTcount: A:0.22, C:0.27, G:0.26, T:0.26
Consensus pattern (745 bp):
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTC
TCCGGCCGACGTACGCCGCCCGCCCGCCGCCGACTCGTTTCGTCGATCGGCTTAGGCATACGAAG
TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAACAAGATCGGCAGCACACAGAG
GGGGACCCGACTGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCACCCACACGCTC
GTTCCATGGGTTGACTTAGGCATACGGAGTTAATTCCTAGTCTAAGCATACAGAGTTCATTCCCA
GTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC
GCATTTTTCTTCCTCGGGGCACCACTCGGCACACGAGAACCTGACCGACAGCATTAGGGATCTCG
CGATCGGGGGGGCCGGGGGGTGTGCGCACACGATGTGCGATGGGTGCTGGTATTGGCCCTTATAT
TGGCCCCCTATCCCTCATCAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGAGTTTTTAGCTGATTTATTTTGTGCATACCAAAAAAAATACAAGGATCACGT
CTACCAAGGTTGGGACCAAAAATCCTTCCG
Found at i:3367032 original size:26 final size:26
Alignment explanation
Indices: 3367003--3367055 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3366993 GTTGACTTAG
* *
3367003 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3367029 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3367055 G
1 G
3367056 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3367659 original size:900 final size:890
Alignment explanation
Indices: 3365840--3368749 Score: 3986
Period size: 894 Copynumber: 3.3 Consensus size: 890
3365830 AACTCCTTCC
* * *
3365840 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATCCCTTCT
1 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
*
3365905 CTCTGGCCGGCGTAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
66 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * *
3365970 TTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGACAGCAAGATCGGCAGCACACAGAGGGGG
131 TTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGACAGCAGGATCGGCAGCACGCAGAGGGGG
* ** * * * * *
3366035 ACCCGATCGATCCCTAGCTTGCGTATCCCGCCCCTCTGGCCGGTTGAG-GCCCGCATGCTTGTTC
196 ACCCG-TCCATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG-TGAGCACCCGTATGCTCGTTT
* *
3366099 CGTGGGTTGACTTAGGCATACGGAGTTAATTCTTAGTCTAAGCATATGGAGTTCATTCCCAGTCT
259 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCT
* * * * *
3366164 AAGATCAGACCGGACCGAGGGTTGGGGCAGTACATGCTGGGCTTGGGCATGTGCTGGTGTCGCAT
324 AAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * *
3366229 TTTTCTTCACTGGTGCACCATC----GC--CA---GAGAACCTGACTGACAGCATTGGGGTTCCG
389 TTTTCTTCAC-GGGGCACCATCTGGAGCGTCATCGGAGAACCTGACCGGCAGCATTGGGGTTCCG
*
3366285 ACGATCGGGGGGGCCGGGGGGGTGTGCGCACACGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
453 ACGATC-GGGGGGCCGGGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * *
3366350 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAATGAGCGTTTGAGATTT
517 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTT
* *
3366415 TACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACA
582 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * *
3366480 AAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAAAATACAAGGATC
647 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGCATC
* * ** *
3366545 ACGTCTACCAAGTTTGGGACCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCCTAAAA
712 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTAGAACCGTAAAA
* * *
3366610 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGTCTTA
777 ATTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* **
3366675 AGGGACCCTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTG
842 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* *
3366724 GAAATATGAAGATCTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
1 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
3366789 CTCTGGCTGGCGTAGTGCCCACCCGACCGCCCGCTCGTTTTGTCAGTTGGCTTAGGCATACGGAG
66 CTCTGGCCGGCGTAGTG----CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * *
3366854 TTCATTCCCAGTCTAAGATCGGACCATATTGAGGGTTATGGCAGCAGGATGGGCAGTACGTAGAG
127 TTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGACAGCAGGATCGGCAGCACGCAGAG
* *
3366919 GGGGACCCAGTCCATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGTACGCTC
192 GGGGACCC-GTCCATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG-TGAGCACCCGTATGCTC
**
3366984 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCA
255 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCA
* *
3367049 GTCTAAGATCAGACCAGA-CGAGGGTTGCGGTAGCACATGTTGGGCTCGGGCATGTGCTGGTGCC
320 GTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* ** *
3367113 GTATTTTTCTTCATCGGGGCACCATCATTGGAGCGTCATCGGAGAACCTGACCGGTGGCATTAGG
385 GCATTTTTCTTCA-CGGGGCACCATC--TGGAGCGTCATCGGAGAACCTGACCGGCAGCATTGGG
* * * * * *
3367178 GTTCCGACGATCAGGGGGTCGGATGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTGCTTG
447 GTTCCGACGATCGGGGGGCCGG--GGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTG
* * * *
3367243 GCCCATATATTGGCCCCCTATCCCTCATCAAACCTTGAGAGCTCACTCCCCCTTAAAGAGCATAT
510 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACTCCCCCTTAAAGAGCATTT
* *
3367308 GGGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
575 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
3367373 GGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAAGTTTTTTGTTCATGCCAACAAAAATAC
640 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * * *
3367438 AAGTATCCCGTCTACCAAGTTGGGGGCCAAAATTCCATCCGAAAAAATTTTAAAAAATCTAGAAC
705 AAGCATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTAGAAC
* * *
3367503 CGTAAAAATTTTCCAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGA
770 CGTAAAAATTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGA
3367568 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
835 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * * * *
3367624 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTTCGCTTCCCGCCT
1 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* ** * *
3367689 CTCTGGCCGGCGTAGTGCCTGCCCGTTCGCTCGTTTCGTCGATTGGCTTAGGCATACAGAGTTCA
66 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * ** * *
3367754 TTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAACAGTAGGATCGACAGCACGCAGA-GGGG
131 TTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGACAGCAGGATCGGCAGCACGCAGAGGGGG
* * * * * *
3367818 ATCCGGCCGATCCTCGACTTGCGCATCCCGCCCCTCTGTCCGGTCGAGCGA-CCGTATGCTCTTT
196 ACCCGTCC-ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGT-GAGC-ACCCGTATGCTCGTT
* * * * * *
3367882 TCGTAGGTTGACTTAGGCATTCGAAGTTCATTCCCATTCTAAGCATATGGAGTTCATTCCGAGTC
258 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTC
* * * *
3367947 TAAGATCAGACCAGACCGAGGGATGCAGCAGCCCATGCTGGGCTCAGGCATGTGCTGGTGCCGCA
323 TAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * * *
3368012 TTTTTCTTTGACGGGGCACCATCGTCGGAGCGTCGTCGGAGAACTTTACCGGCCGCATTGGGGTT
388 TTTTTC-TTCACGGGGCACCATC-T-GGAGCGTCATCGGAGAACCTGACCGGCAGCATTGGGGTT
* * * *
3368077 CCGGCGATCGGGGGGGCC-GGGGGGTGAGCGCACAAGCTGTGCAATGGGTGCTGGTACTTGGCCC
450 CCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCC
3368141 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACTCCCCCTTAAAGAGCATTTGAGA
514 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACTCCCCCTTAAAGAGCATTTGAGA
*
3368206 TTTTACAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
579 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
*
3368271 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACGAGC
644 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGC
* * *
3368336 ATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTA-AACTGT
709 ATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAAT-CTAGAACCGT
* * *
3368400 AAAAAGTTTT-GAAAATCATGAAAAATAGAAAATGAGTCGTCTTTCCATGAAACTTCACATGAAG
773 AAAAA-TTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAG
3368464 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
837 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * *
3368518 GAAATAAGAAGATGTGCCTAAACCCACGTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCT
1 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
3368583 CTCTGGCCGGCATAGCGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
66 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * * * * *
3368648 TTCCCAGTGTAAGATTGGATCGGACTAAGGGTTG-CAGCAGCAGGATCAGTAGCATGCAGAGGGG
131 TTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGA-CAGCAGGATCGGCAGCACGCAGAGGGG
* * *
3368712 GACCCGATCGATCCTCGGCGTT-TGCATCCC-CCCCTCTG
195 GACCCG-TCCATCCCCGGC-TTGCGCATCCCGCCCCTCTG
3368750 CCCGATTGAA
Statistics
Matches: 1774, Mismatches: 219, Indels: 56
0.87 0.11 0.03
Matches are distributed among these distances:
884 76 0.04
888 199 0.11
889 87 0.05
893 1 0.00
894 557 0.31
895 155 0.09
896 195 0.11
897 9 0.01
898 8 0.00
899 31 0.02
900 456 0.26
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (890 bp):
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGACAGCAGGATCGGCAGCACGCAGAGGGGG
ACCCGTCCATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTGAGCACCCGTATGCTCGTTTCG
TGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAA
GATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
TTCTTCACGGGGCACCATCTGGAGCGTCATCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACG
ATCGGGGGGCCGGGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGCATCACGT
CTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTAGAACCGTAAAAATTT
TCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
Found at i:3369534 original size:26 final size:26
Alignment explanation
Indices: 3369490--3369540 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
3369480 TGACTTAGGT
*
3369490 ATACGGAGTTTATCACCAGTCTAAGC
1 ATACGGAGTTCATCACCAGTCTAAGC
3369516 ATACGGAGTTCATTC-CCAGTCTAAG
1 ATACGGAGTTCA-TCACCAGTCTAAG
3369541 ATCGGATAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCACCAGTCTAAGC
Found at i:3370412 original size:26 final size:26
Alignment explanation
Indices: 3370383--3370433 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3370373 TTGACTTAGG
*
3370383 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACAGAGTTCATTCCCAGTCTAAC
3370409 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
3370434 GATCGGATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAC
Found at i:3370872 original size:453 final size:445
Alignment explanation
Indices: 3370034--3370935 Score: 1140
Period size: 453 Copynumber: 2.0 Consensus size: 445
3370024 GTCATCTTGC
* * * * * *
3370034 CATGAAACTTTACGTGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCGTAATAATGGCATT
1 CATGAAACTTCACGTGAAGGCTTAAGAGACCACTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
3370099 GGCACATAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGGCTTGCGCA
66 GGCACACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCA
* *
3370164 TCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCAACCGCTCGTTTCATCAATTGGCTTAGGCATAC
131 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCAACCGCTCGTTTCATCAATTGGCTTAGGCATAC
* ** * * *
3370229 GGAGTACATTCCCAGTCTAAGATCAGATTAGACCAAGGGTTGCAACAGCAGGATTGGCAGCACGT
196 AGAGTACATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAACAGCAGGATCGACAGCACGC
* ** ** * * *
3370294 AGAGGGGGACCCGACTGATCCCCGACTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCGTAC
261 AGAGGGGGACCAGACCAATCCCCGACTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCAC
* * * *
3370359 GTTCGTTTTATGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATACAGAGTTCATT
326 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAACCATACAGAGTTCATT
* * * * *
3370424 CCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCAGG
391 CCCAGTCTAAGATAGAACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCAGG
3370479 CATGAAACTTCACGTGAAGGCTTAAGAGACCACTGTATGAATTTACAAGCCATAAAAATGGCATT
1 CATGAAACTTCACGTGAAGGCTTAAGAGACCACTGTATGAATTTACAAGCCATAAAAATGGCATT
** * *
3370544 GGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCTCCCTATGGATCCACAGCTTGCGCA
66 GGCACACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCA
* * *
3370609 TCCCGTCTCTCTGGTCGACGTAGTGCCCTCCCGCCC-GCCTGCCCGTACGTTTCATCGATTGGCT
131 TCCCGTCTCTCTGGCCGACGTAGTG----CCCGCCCAACC-G--C-T-CGTTTCATCAATTGGCT
* * ** *** * **
3370673 TAGGCATACAGAGTTCATTCGCAGTCTAAGATTGGACCAGATTGAGGGTTGTAGTAGCAGGATCG
187 TAGGCATACAGAGTACATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAACAGCAGGATCG
* * * * *
3370738 ATAGCATGCAGAGGGGGACCAGGCCAATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAG
252 ACAGCACGCAGAGGGGGACCAGACCAATCCCCGACTTGCGCATCCCACCCCTCTGGCCGACTGAG
* *
3370803 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACA
317 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAACCATACA
* * * * *
3370868 GAGTTCATTCTCAGTCTCAGATAGAACCAGACCGAGGGTTGCGATAGCACATGCTGGGCTCGGG
382 GAGTTCATTCCCAGTCTAAGATAGAACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCAGG
3370932 CATG
1 CATG
3370936 TGCTCGTGCC
Statistics
Matches: 384, Mismatches: 64, Indels: 10
0.84 0.14 0.02
Matches are distributed among these distances:
445 138 0.36
448 2 0.01
449 8 0.02
451 1 0.00
452 1 0.00
453 234 0.61
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.24
Consensus pattern (445 bp):
CATGAAACTTCACGTGAAGGCTTAAGAGACCACTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCAACCGCTCGTTTCATCAATTGGCTTAGGCATAC
AGAGTACATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAACAGCAGGATCGACAGCACGC
AGAGGGGGACCAGACCAATCCCCGACTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCAC
GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAACCATACAGAGTTCATT
CCCAGTCTAAGATAGAACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCAGG
Found at i:3371607 original size:26 final size:26
Alignment explanation
Indices: 3371571--3371623 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3371561 GTTGACTTAG
3371571 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3371597 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3371623 G
1 G
3371624 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3372932 original size:885 final size:889
Alignment explanation
Indices: 3371000--3375106 Score: 5097
Period size: 885 Copynumber: 4.6 Consensus size: 889
3370990 AACCTGACCG
* * * *
3371000 GTAGCCATTAAAGTGTCGGAAATGGGGACACCTTTTTCCAATGGTCACAAAATCTTGTACACTTT
1 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * * *
3371065 GAATTTTTTGCTGAATCTTTTTT-TTCATGCCAACAAAAATACAAGGATGACGTCTACCAAGTTG
66 GAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* *
3371129 GGGGCCAAAACTCCTTTCGAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTGT
130 GGGGCCAAAACTCCTTT-GAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGT
* * ** * *
3371194 GAAAAATAGAAAACGAGTTGTCCTGCCACAAAACTTCACGTAAAGGCTTAAGGGACCATGGTATG
194 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
3371259 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTAC
259 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
** *
3371324 CACCCTATCGATCCACGGCTTGCTTATCCCGTCTCTCTGGCCGGCGAAGTGCCCGCCCGCCCG-C
324 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
* * * * ** * **
3371388 CCGCT-ATTTCGTTGATTGGCGTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGATT
389 CCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
* * * ** * * * * * *
3371452 GAGGGTTGCAGTAGTAGGA-TAGGTAGCACATAGAAGGGGACCCGACCGATCCTCAGCTTACGCA
454 GAGGGTTGCGGCAGCAGGATTA-ACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCA
**
3371516 TCCCGCCCCTCTAGCCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
518 TCCCGCCCCTCTAGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
*
3371581 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGC
583 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGC
* * * * *
3371646 AGTAGCACATGCTGGGCTTGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG-------GT--
648 GGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGCACCATCGTCG
* * * * ** **
3371702 -ACCATCGTCGGAGAACTTGACCGGCGGCATTGGGGTTCCGGGGATC-GGGGGGCTAGGGGGTGT
713 GAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGT
3371765 GCGCACCTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
778 GCG---CTGA---GCGA---GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * *
3371830 CCTTGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAAGTTTGCTGCCA
834 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
3371886 GTAGCCATTAAAGTGTCAGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
1 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
3371951 GAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTG
66 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* ** * * * ** * *
3372016 GAGG-CAAAAATAATTCTGAAATAACTTTAAAAAATCCCAAATCACAAAAATTTTCAAAAATCAT
131 G-GGCCAAAACTCCTT-TGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGT
* *
3372080 GAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATG
194 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
3372145 AATTTGCAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAT
259 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
3372210 CACCCTATCGATCCACAGTTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
324 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-C
* * * *
3372275 CTCACGCTCGTTTTGCCGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
388 C-C-CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * * * *
3372340 ACCGATGGTTGGGGCAGTACGATTAACAGCATGTAGAGGGGGTCCCGACCGATCCCCGTCTTGCG
451 ACCGAGGGTTGCGGCAGCAGGATTAACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCG
* * ** * * **
3372405 CATCGCGCCCCTCTGGCTTACTGAGCGCCCGCACGCTCGTTTCTTGGGTTGACTTAGGCATACAA
516 CATCCCGCCCCTCTAGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * *
3372470 AGTTCATTCCTAGTCTAAGCGTACGGTA-TTCATTCCCAGTC-AAGATCAGATCGGACTGAGGGT
581 AGTTCATTCCCAGTCTAAGCATACGG-AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGT
* * * * *
3372533 TACGGCAGCACATGCTGGGCTCGGGCTTGTGATGGTGCCACATTTTTCTTCGCTAGGGCACCATC
645 TGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCG-TCGGGCACCATC
* **
3372598 GTCGGAGCATCGCCGGAGAACCTG-CTGGCGGCATTGGGGTTTC-AGCGATCGGGGGGATCGGGG
709 GTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGA-CGATCGGGGGGGCCGGGG
3372661 GGTGTGCG-T-A-C-A-TG-TGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTC
773 GGTGTGCGCTGAGCGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
3372719 GAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCA
838 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
3372771 GTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTC
1 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
3372836 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGATCACATCTACCAAGTTTG
66 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * **
3372901 GGGCCAAAAATCCTTTGAAAAAAATTTTAAAAAATCCCAAACCGTAAAAATTTTTGAAAATCGTG
131 GGGCCAAAACTCCTTTG-AAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTG
* *
3372966 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGA
195 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* ***
3373031 ATTTACAACCCATAAAAATGGCATTGGCATTTAGAAATATGAAGATGTGCCTAAACCCACCTACC
260 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * * *
3373096 ACACAATCAATCCACGGCTTGCGCGTCCCGCCTCTCTGGCTGGCGTAGTGCCCGCCCGTCCGCCC
325 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CC-CGC
* * * * *
3373161 GCCCGCTCATTTCGTCAGTCGGCTTAGTCATATGGAGTTCATTACCAGTCTAAGATC-GAACC-G
388 -CCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAG
* * ** * * * * *
3373224 AACTGAGGGATGCGATAGCAGGATTGATAGCACGTAGAGGAGGACCCGATCGATCCTCGACTTGC
451 -ACCGAGGGTTGCGGCAGCAGGATTAACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGC
* * * * * * * * *
3373289 GCATTCTGCCCCTCTAGTCAACTGAGCGCCCGCATGCTCGTTCCGTGGGTTGAGTTAGGCATATG
515 GCATCCCGCCCCTCTAGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* ** *
3373354 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATTGGACCGGACCGAGGGT
580 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGT
* *
3373419 TGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGCTGTCGCATTTTTCTTCGTCGGGGCACCATC
645 TGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTC-GGGCACCATC
* * ** *
3373484 GTCGGAGCATCGCCTGAGAACCTGACCGACGGCATTAAGGTTTCGATGATCGGGGGGGCCGGGGG
709 GTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGG
*
3373549 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGCCCCTTATATTGGCCCCCTATCCCTCAT
774 GTGTGCG--C-TGA---GCGA---GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * *
3373614 CAAATCTCGGGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
830 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
3373674 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
1 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
3373739 GAGTTTTTGGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTG
66 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * ** * *
3373804 GGCCCAAAACTTCTTCCGAAAAAATTTTAAAAAAAT-CCAGAACCACAAAAAGTTTAAAAAATCA
131 GGGCCAAAACTCCTT-TGAAAAAATTTT-AAAAAATCCCA-AACCGTAAAAAGTTTCAAAAATCG
** *
3373868 TGAAAAATAGAAAACGAGTTATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTAT
193 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
3373933 GAATTTACCAGCCATAAAAATGGCATTTGCACACAGAAATATGAAGATGTGCCTGAACCCACCTA
258 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
3373998 CCACCTTCTCGATCCACGACGTGTGCATCCCGTCTCTCTGGCCGGCGTAGT--------GCCCG-
323 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* * * * ** *
3374054 CCCACTCGTTTCATTGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGAC
388 CCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * ** * ** * *
3374119 CGAGAGTTGCAGCAGGAGGATCGACAACACACAGAAGGGGACCC-AGTCGATCCCTGGCTTGCGC
453 CGAGGGTTGCGGCAGCAGGATTAACAGCACGTAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGC
* * *
3374183 ATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCGTTGGTTGACTTAGGCATACGGA
517 ATCCCGCCCCTCTAGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * *
3374248 GTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-TCGACGGTT
582 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTT
* * * * *
3374312 GTGGTAGCACATGCTGGGCTCGGGCATGCGTTAGTGCCGTATTTTTCTTCGTCGGAGCACCATCG
646 GCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGG-GCACCATCG
* * * * *
3374377 CCGAAGCATCGCCGAAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG
710 TCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGG
* *
3374442 TGTGCGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATC
775 TGTGCG--C-TGA---GCGA---GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
3374507 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-ACA
831 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
3374565 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
1 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
3374630 GAGTTTTTAGCTGAATGTTTTTGTGCATCCCAACAAACATACAAGGATCACGTATACCAAGTTTG
66 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
*
3374695 GTGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTG
131 GGGCCAAAACTCCTTT-GAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTG
* ** *
3374760 AAAAATAGAAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGATGATAGTATG
195 AAAAATAG-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* ** *
3374825 AATTTACAAGCCATAAAAAGGGCATTGGCACGTA-AAAGTATGAAGATGTGCCTAAACCCACCTG
259 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA-TATGAAGATGTGCCTAAACCCACCTA
* *
3374889 CCACCCTATCGATCCACGGCTGGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-
323 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* * *
3374953 CCCGCTCATTTCGTCGATTGGCTGAGGCATACGGAG-TCATTCCTAGTCTAAGATCAGACCAGAC
388 CCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* *
3375017 CGAGGGTTGCGGCAGCAGGA-T--CAGCACGTAGAGGGGGACACGATCGATCCCTGGCTTGCGCA
453 CGAGGGTTGCGGCAGCAGGATTAACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCA
** * * *
3375079 TCCTACCCCTATTGCCGGCTGAGCACCC
518 TCCCGCCCCTCTAGCCGACTGAGCACCC
3375107 ATACGGAGTT
Statistics
Matches: 2768, Mismatches: 381, Indels: 135
0.84 0.12 0.04
Matches are distributed among these distances:
884 7 0.00
885 601 0.22
886 456 0.16
887 45 0.02
888 2 0.00
889 1 0.00
890 108 0.04
891 491 0.18
892 433 0.16
893 2 0.00
894 1 0.00
895 59 0.02
896 4 0.00
897 2 0.00
898 45 0.02
899 33 0.01
900 21 0.01
901 34 0.01
902 21 0.01
903 218 0.08
904 184 0.07
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (889 bp):
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
GGGCCAAAACTCCTTTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCC
GCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
GGGTTGCGGCAGCAGGATTAACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
CGCCCCTCTAGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGC
AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGCACCATCGTCGGAG
CATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCG
CTGAGCGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
Found at i:3373376 original size:26 final size:26
Alignment explanation
Indices: 3373347--3373399 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3373337 GTTGAGTTAG
*
3373347 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3373373 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3373399 G
1 G
3373400 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3374275 original size:26 final size:26
Alignment explanation
Indices: 3374239--3374291 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3374229 GTTGACTTAG
*
3374239 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3374265 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3374291 G
1 G
3374292 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3378272 original size:26 final size:26
Alignment explanation
Indices: 3378243--3378295 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3378233 GTTGACTTAG
3378243 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3378269 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3378295 G
1 G
3378296 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3380039 original size:26 final size:26
Alignment explanation
Indices: 3380010--3380062 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3380000 GTTGACTTAG
*
3380010 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
3380036 GCATACAGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3380062 G
1 G
3380063 ATCGGACAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3381292 original size:895 final size:892
Alignment explanation
Indices: 3379139--3383376 Score: 5620
Period size: 892 Copynumber: 4.8 Consensus size: 892
3379129 TTGACGTAGG
* * * * * * *
3379139 CATACGAAGTTCATTCCAAGTCTAAGATCAGACCAGACCGAGGGTTCCGGCAGCAAATGCTGGGA
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTTCGACAGCACATGCTGGGC
* * * *
3379204 TCAGGCATGTGCTGGTG-TGACTTTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG-TCAGAG
66 TCAGGCATGTGCTGGTGCCG-CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCT-GGAG
* * ***
3379267 AACCTGTCCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCCAGGGAATTGTGCGCACATGATGT
129 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
*
3379332 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
3379397 CA-CCCCTTAAAGAGCATTTGAGAATTTATATGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
3379461 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTT
* * * * *
3379526 GTGCATGCCAACAAAAATACAAGGATGACGTCCACCAAGTTTGGGGACAAAACTCCTTTCGAAAT
388 GTGCATGCCAACAAAAA-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
3379591 AATTTTACAAAATCCCGAACCGCAAAAAGTTACAAAAATCATGAAAAATAGAAAACGAGTCATCT
452 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
3379656 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTATAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * * *
3379721 ATTGGCGTGCAGAAATATGAAGATATCCCTAAACCAACCTACCACCCTATCGATCTACAGCTTGT
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * * *
3379786 GCATCCCATCCCTCTAGCCGACGTAGTGCCCGCCTGCCCGCCCACGCGTTTCGTCGGTTGGCTTA
647 GCATCTCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCG-TCGCTCGTTTCGTCAGTTGGCTTA
* * *
3379851 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGTGGTAGCAGGATCGAT
707 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGAC
* * * *
3379916 AGCACACAAAGGGGGACCCGGTTGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCG-CTGAGCA
772 AGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCA
* *
3379980 CTCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
837 C-CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAA
* * * * *
3380037 CATACAGAGTTCATTCCCATTCTAAGATCGGACAAGACCGAGGGTTGT-GGCAGCACATGCTAGG
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT-TCGACAGCACATGCTGGG
* * * * *
3380101 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGCCGTAGA
65 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
* * * *
3380166 ACCTGACCGGCAGCATTGGGGTTCCGACGATAGAGGGGGCCGGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
3380231 GATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
3380296 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATTG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
3380361 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTATTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGT
* *
3380426 GCATGCCAACAAAATAACAAGGATCACGTCTACCAATTTTGGGGCCAAAAATCCTTCCGAAAAAA
390 GCATGCCAACAAAA-AACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
3380491 TTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTG
454 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
3380556 CCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * **
3380621 TGGCACGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACGCTCTCGATCCACGGCTTATGC
584 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
*
3380686 ATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCTCGTTTCGTCAGTTGGCTTAGGTATA
649 ATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGT-CGCTCGTTTCGTCAGTTGGCTTAGGCATA
* ** * *
3380751 TGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACG
713 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACA
*
3380816 CAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACACGCA
778 CAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCAC-CGCA
* *
3380881 CGCTCGTTTTGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAA
842 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAA
* * * * *
3380932 CATATGGAGTTCATTCCCAATCGAAGATTGCGTCCAGA-CGAGGGTTTCGACAGCACATGCTGGG
1 CATACGGAGTTCATTCCCAGTCTAAGATCG-GACCAGACCGAGGGTTTCGACAGCACATGCTGGG
* * *
3380996 CTCGGGCATGTGCTGGTGCCGTATTTTTCTT-GACTGGGGCACCATCGTCGGAGCATCGCTGGAG
65 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCTGGAG
* *
3381060 AACCTG-GCAGCTGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTG-GCACATGATGT
129 AACCTGACCGGC-GGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
3381123 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
3381188 CACCCCCTTAAAGAGCATTTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAA
258 CACCCCCTTAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
3381253 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTT
* ** *
3381318 TGTGCATGCCAACAAAACAACAAGGATCACATCTACCAAGTTTGGGGATAAAACTCTTTCCGAAA
387 TGTGCATGCCAACAAAA-AACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
3381383 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTC
451 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
** *
3381448 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTGATAAAAATTG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
3381513 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCC-ATCGATCCATGGCTT
581 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC-CCTATCGATCCACGGCTT
* *
3381577 GCGCATCTCGTCTCTTTGGCCGGCGTAGTGCCCGCCCG-C-AT-GTTTCGTCAGTTGGCTTAGGC
645 GCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCGCTCGTTTCGTCAGTTGGCTTAGGC
* ** * * ** *
3381639 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGTAGGATTGGGAAC
710 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGC
* *
3381704 ACACAGATGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
775 ACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGC-ACC
* * * * *
3381769 GCACTCTCATTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCTCAGTCTAAG
839 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAA
* * * * * * *
3381823 CATACGGAGTACATTCCCAGTCTAAGATCAGACCGGATCGAGGATTAC-AGTAGCACATGCTGGG
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTTCGA-CAGCACATGCTGGG
* * * * *
3381887 CTCAGGTATGTGCTGGTGCCGCATTTTTCTTTGTCAGGGCACCATCGCCGAAGCATCG-TCGGAG
65 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCT-GGAG
* * * * * **
3381951 AACCTGATCGACGGCATTAGGGTTTCAGCGATCAGGGGGGCGAGGGGGGGTGTGCGCACATGATG
129 AACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGG-GCCGGGGGGTGTGCGCACATGATG
*
3382016 TGTGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
3382080 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
3382145 ATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTT
* *
3382210 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
387 TGTGCATGCCAACAAAAA-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
3382275 AAAGTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTC
451 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
3382340 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * *
3382405 CATTGGCATGGGGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGACTTG
581 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
3382470 CGCATC-CTGTCTCTCTGGGCGACGTAGTGCCCG-CC-T-GCTCGTTTCGTCAGTTGGCTTAGGC
646 CGCATCTC-GTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCGCTCGTTTCGTCAGTTGGCTTAGGC
* * * *
3382531 ATACAGAGTTCATTCCCAGTCTAAGAT-TGTACCAAACTGAGGGTTGTGGTAGCAGGATCGACAG
710 ATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGTGGCAGCAGGATCGACAG
* * ** ** * * *
3382595 CACGCAGAGAGGGACCCGACCGATCCCAAGCTTGCGCATCCTGCCCCTCTGGCCGGCAGAGCACC
774 CACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACC
* ** *
3382660 TGCACGCTCGTTTCATGGGTTGACCGAGGCATATGGAGTTCATTCCCAGTCTAAA
839 -GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAA
* ** *** *
3382715 CATATGGAGTTCATTCCTTGTCTAAGATCGGATTGGACCGAGGGTTGC-AGCAGCACATGCTGGG
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTTCGA-CAGCACATGCTGGG
* * * *
3382779 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTTGGAGCATCGCTAGAGA
65 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
* * * * * * * **
3382844 ACCTGACTGG-GGTATTGGGGTTCCGACGATCAGGGTGGTCGGGGGGCTGTGCGTACATGATGCA
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGG-TGTGCGCACATGATGTG
** * * *
3382908 CGATGGGTGCTGGTACTTGGTGCTCATATTGGCCCCCTATCCCTTAGCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
3382973 ACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * ** * ** * * *
3383038 AGGGACACTTTTTTCAATTGGTCACAAAATCTT-T---TTTTAAATGGTCA-C-AAAATCTTTT-
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTG
* * *
3383096 T---T-----C-----A-AAGGATCACGTCTACGATGTTTGGGGGCCCATAAACTCCATCCG-AA
389 TGCATGCCAACAAAAAACAAGGATCACGTCTACCAAGTTT-GGGG-CCA-AAACTCCTTCCGAAA
* * * *
3383146 AATTTTTATAAATATCTCCAGAACCGTAATATAAGTTTC-AAAATCGTTGAAAAATAAAAAACGA
451 AAATTTTA-AAAAATC-CC-GAACCGTAA-A-AAGTTTCAAAAATC-ATGAAAAATAGAAAACGA
* *
3383210 GTTGTCTTGCCATGAAACAATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAAGCCAT
510 GTCGTCTTGCCATGAAAC-TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC-AAGCCAT
* *
3383275 -AAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCC
573 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * *
3383339 ACGGCTTGCACATCTAGTCTCTCAGGCC-GCGTAGTGCC
638 ACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCC
3383377 GCCGCCGCCC
Statistics
Matches: 2966, Mismatches: 329, Indels: 112
0.87 0.10 0.03
Matches are distributed among these distances:
869 19 0.01
870 5 0.00
871 11 0.00
872 16 0.01
873 1 0.00
874 9 0.00
875 7 0.00
876 51 0.02
877 119 0.04
878 7 0.00
881 1 0.00
884 1 0.00
885 8 0.00
886 1 0.00
887 6 0.00
889 7 0.00
890 52 0.02
891 453 0.15
892 667 0.22
893 63 0.02
894 271 0.09
895 581 0.20
896 7 0.00
897 83 0.03
898 519 0.17
899 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTTCGACAGCACATGCTGGGC
TCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTG
CATGCCAACAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCGCTCGTTTCGTCAGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACACAG
AGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAA
Found at i:3381837 original size:26 final size:26
Alignment explanation
Indices: 3381798--3381848 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
3381788 TGACTTAGGT
* *
3381798 ATACGGAGTTCATTCTCAGTCTAAGC
1 ATACGGAGTACATTCCCAGTCTAAGC
3381824 ATACGGAGTACATTCCCAGTCTAAG
1 ATACGGAGTACATTCCCAGTCTAAG
3381849 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTACATTCCCAGTCTAAGC
Found at i:3383096 original size:24 final size:23
Alignment explanation
Indices: 3383045--3383101 Score: 96
Period size: 23 Copynumber: 2.5 Consensus size: 23
3383035 AATAGGGACA
*
3383045 CTTTTTTCAATTGGTCACAAAAT
1 CTTTTTTCAAATGGTCACAAAAT
*
3383068 CTTTTTTTAAATGGTCACAAAAT
1 CTTTTTTCAAATGGTCACAAAAT
3383091 CTTTTTTCAAA
1 CTTTTTTCAAA
3383102 GGATCACGTC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.32, C:0.16, G:0.07, T:0.46
Consensus pattern (23 bp):
CTTTTTTCAAATGGTCACAAAAT
Found at i:3383108 original size:23 final size:22
Alignment explanation
Indices: 3383045--3383108 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 22
3383035 AATAGGGACA
*
3383045 CTTTTTTCAATTGGTCACAAAAT
1 CTTTTTTCAA-AGGTCACAAAAT
*
3383068 CTTTTTTTAAATGGTCACAAAAT
1 CTTTTTTCAAA-GGTCACAAAAT
3383091 CTTTTTTCAAAGGATCAC
1 CTTTTTTCAAAGG-TCAC
3383109 GTCTACGATG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
22 2 0.06
23 34 0.94
ACGTcount: A:0.31, C:0.17, G:0.09, T:0.42
Consensus pattern (22 bp):
CTTTTTTCAAAGGTCACAAAAT
Found at i:3383605 original size:26 final size:26
Alignment explanation
Indices: 3383569--3383667 Score: 171
Period size: 26 Copynumber: 3.8 Consensus size: 26
3383559 TGACTTAGGA
3383569 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
*
3383595 ATACGGAGTTCATTCCTAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
* *
3383621 ATACGAAGTTCATTCCTAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
3383647 ATACGGAGTTCATTCCCAGTC
1 ATACGGAGTTCATTCCCAGTC
3383668 AAGAGCAGAC
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 69 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:3386477 original size:26 final size:26
Alignment explanation
Indices: 3386448--3386500 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3386438 GTTGACATAG
* *
3386448 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
3386474 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3386500 G
1 G
3386501 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3387715 original size:894 final size:888
Alignment explanation
Indices: 3385296--3388194 Score: 3876
Period size: 894 Copynumber: 3.3 Consensus size: 888
3385286 AACTCCTTCC
* * * *
3385296 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCATGACTTGCGCATCCCTTCT
1 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* *
3385361 CTCTGGCCGGCGTAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
66 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCA
* * * ** * *
3385426 TTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGACAGCAAGATCGGCAGCACACAGAGGGGG
131 TTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAACAGCAGGATCGACAGCACACAGAGGGGG
* * * *
3385491 ACCCGATCGATCCT--A--TGCGTATCCCGCCCCTCTGGCCGGTTGAGTC-CCGTATGCT-TATT
196 ACCCGACCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG-CACCGTATGCTCTTTT
* *
3385550 CGTGGGTTGACTTAGGCATACGGAGTTAATTCTTAGTCTTAAGCATATGGA-TTCATTCCCAGTC
260 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTC-TAAGCATATGGAGTTCATTCCCAGTC
* * * *
3385614 TAAGATCAGACCGGACGAGGGTTGGGGCAGTACATGCTGGGCTTGGGCATGTGCTGGTGTCGCAT
324 TAAGATCAGACCGGACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * *
3385679 TTTTCTTCACTGGTGCACCA--T--A-CG-C-CAGAGAACCTGACCGACAGCATTGGGTTCCGAC
389 TTTTCTTCAC-GGGGCACCATCTGGAGCGTCTCGGAGAACCTGACCGGCAGCATTGGGTTCCGAC
* * *
3385737 GATCGGGGGGCCGGGGGGTGTGGCGCA-ACGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
453 GATCGGGGGGCCGGAGGGTG-AGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
3385801 TGGCCCCCTATCCCTCATCAAACCTCGAGACCTCAC-ACCCCTTAATAGAGCATTTGAGATTTTA
517 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACTCCCCCTTAA-AGAGCATTTGAGATTTTA
* * *
3385865 CAGGTTAGCTGCCAGTAGCCATTAATGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
581 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
3385930 ATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAAAATACAAGGATCAC
646 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* *
3385995 GTCTACCAAGTTTGGGACCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCT-GAACC-TAAAAA
711 GTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCTAGAACCGTAAAAA
* *
3386058 -GTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGTCTTAA
776 TTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* **
3386122 GGGACCCTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTG
841 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* *
3386170 GAAATATGAAGATCTGCCCAAACCCACCTACCA-CCTATCGATCCACGGCTTGCGCATCCCGTCT
1 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
3386234 CTCTGGCTGGCGTAGTGCCCACCCGACCGCCCGCTCGTTTTGTC-AGTTGGCTTAGGCATACGGA
66 CTCTGGCCGGCGTAGTG----CCCGCCCGCCCGCTCGTTTCGTCGA-TTGGCTTAGGCATACGGA
* * **** * * * **
3386298 GTTCATTCCCAGTCTAAGATCGGACCATATTGAGGGTTATGGCAGCAGGATGGGCAGTACGTAGA
126 GTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAACAGCAGGATCGACAGCACACAGA
* * * * * * *
3386363 GGGGGACTCAGTCC-ATCCCCGGCTTGTGCATCCCGCCCCACTGGCCGGCTGAGCACCCGTACGC
191 GGGGGAC-CCGACCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA-CCGTATGC
* * *
3386427 TCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCTAGTCTAAGCATATAGAGTTCATTCC
254 TCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCC
* *
3386492 CAGTCTAAGATCAGACCGGACGAGGGTTGCGGTAGCACATGTTGGGCTCGGGCATGTGCTGGTGC
319 CAGTCTAAGATCAGACCGGACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* **
3386557 CGTATTTTTCTTCATCGGGGCACCATCATTGGAGCGTCATCGGAGAACCTGACCGGTGGCATTAG
384 CGCATTTTTCTTCA-CGGGGCACCATC--TGGAGCGTC-TCGGAGAACCTGACCGGCAGCATT-G
* * * * * * *
3386622 GGTTCCGGCGATAGGGGGGTCGGATGGGGGTGTGCACACAAGATGTGTGATGGGTGCTGGTGCTT
444 GGTTCCGACGATCGGGGGGCCGGA---GGGTGAGCGCACAAGATGTGCGATGGGTGCTGGTACTT
* * * *
3386687 GGCCCATATATTGGCCCCCTATCCCTCATCAAACCTTGAGAGCTCACTCCCCCTTAAAGAGCATA
506 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACTCCCCCTTAAAGAGCATT
* * *
3386752 TGGGATTTTATAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
571 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * *
3386817 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAAGTTTTTTGTTCATGCCAACAAAAATA
636 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * *
3386882 CAAGGATCCCGTCTACCAAGTTGGGGGCCAAAATTCCATCCGAAAAAATTTTAAAAAAT-CTAGA
701 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCTAGA
* * *
3386946 ACCGTAAAAATTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGT
766 ACCGTAAAAATTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
3387011 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
831 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * * *
3387069 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCGTT-CGCTTCCCGCC
1 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC-TTGCGCATCCCGTC
* * * *
3387133 TCTCTGGCTGGCGTAGTGCCTGCCCGTCCGCTCGTTTCGTCGATTGGCTTAGGCATACAGAGTTC
65 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTC
* * * *
3387198 ATTCCCAATCTAAGATTGGACCAGACCGAGGGTTGCAACAGTAGGATCGACAGCACACAGA-GGG
130 ATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAACAGCAGGATCGACAGCACACAGAGGGG
* * *
3387262 GATCCGGCCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGGCCGAGCGACCGTATGCTCTTT
195 GACCCGACCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC-ACCGTATGCTCTTT
* * * * * *
3387327 TCGTAGGTTGACTTAGGCATTCGAAGTTCATTCCCATTCTAAGCATATGGAGTTCATTCCGAGTC
259 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTC
* * * * *
3387392 TAAGATCAGACCAGACCGAGGGATGCAGCAGCCCATGCTGGGCTCAGGCATGTGCTGGTGCCGCA
324 TAAGATCAGACCGGA-CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * *
3387457 TTTTTCTTTGACGGGGCACCATCGTCGGAGCGTCGTCGGAGAACTTTACCGGCCGCATTGGGGTT
388 TTTTTC-TTCACGGGGCACCATC-T-GGAGCGTC-TCGGAGAACCTGACCGGCAGCATT-GGGTT
* *
3387522 CCGACGATCGGGGGGGCCGGAGGGTGAGCGCACAAGCTGTGCAATGGGTGCTGGTACTTGGCCCT
448 CCGACGATC-GGGGGGCCGGAGGGTGAGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCT
3387587 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACTCCCCCTTAAAGAGCATTTGAGAT
512 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACTCCCCCTTAAAGAGCATTTGAGAT
* *
3387652 TTTACAAGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
577 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
3387717 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACGAGCA
642 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* *
3387782 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTA-AACTGTA
707 TCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCTAGAACCGTA
* * * *
3387846 AAAAGTTTT-GAAAATCATGAAAAATAGAAAATGAGTCGTCTTTCCATGAAACTTCACATGAAGG
772 AAAA-TTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
3387910 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACATGCA
836 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* *
3387963 GAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCT
1 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
3388028 CTCTGGCCGGCATAGCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
66 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCA
* * * * * * * **
3388093 TTCCCAGTGTAAGATTGGATCGGACTAAGGGTTGCAGCAGCAGGATC-AGTAGCATGCAGAGGGG
131 TTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAACAGCAGGATCGA-CAGCACACAGAGGGG
* **
3388157 GACCCGACCGATCCTCGGCTTTTGCATCCC-CCCCTCTG
195 GACCCGACCGATCCTCGACTTGCGCATCCCGCCCCTCTG
3388195 CCCGATTGAA
Statistics
Matches: 1761, Mismatches: 216, Indels: 76
0.86 0.11 0.04
Matches are distributed among these distances:
873 43 0.02
874 31 0.02
877 102 0.06
878 3 0.00
880 1 0.00
881 25 0.01
882 19 0.01
883 125 0.07
884 1 0.00
887 1 0.00
889 1 0.00
890 2 0.00
891 1 0.00
893 22 0.01
894 572 0.32
895 158 0.09
896 193 0.11
897 269 0.15
898 14 0.01
899 134 0.08
900 42 0.02
901 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (888 bp):
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAACAGCAGGATCGACAGCACACAGAGGGGG
ACCCGACCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCGTATGCTCTTTTC
GTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTA
AGATCAGACCGGACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
TTCTTCACGGGGCACCATCTGGAGCGTCTCGGAGAACCTGACCGGCAGCATTGGGTTCCGACGAT
CGGGGGGCCGGAGGGTGAGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCTAGAACCGTAAAAATTTTC
AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
Found at i:3390323 original size:453 final size:445
Alignment explanation
Indices: 3389482--3390382 Score: 1172
Period size: 453 Copynumber: 2.0 Consensus size: 445
3389472 GTCATCTTGC
* * * *
3389482 CATGAAACTTTACGTGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCGTAAAAATGGCATT
1 CATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
3389547 GGCACATAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGGCTTGCGCA
66 GGCACACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCA
* *
3389612 TCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCAACCGCTCATTTCATCAATTGGCTTAGGCATAC
131 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCAACCGCTCATTTCATCAATTGGCTTAGGCATAC
* ** * * *
3389677 GGAGTACATTCCCAGTCTAAGATCAGATTAGACCAAGGGTTGCAACAGCAGGATTGGCAACACGT
196 AGAGTACATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAACAGCAGGATCGACAACACGC
* ** * * * *
3389742 AAAGGGGGACCCGACTGATCCCCGACTTGCGCATCCTGCCCCTCTGGCTGGCTGAGTGCCCGCAC
261 AAAGGGGGACCAGACCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCAC
* * * *
3389807 GTTCGTTTTATGGTTTGACTTAGGCATACGGAGTTCATTCCCAATCTAACCATACAAAGTTCATT
326 GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAACCATACAAAGTTCATT
* * * *
3389872 CCTAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTAGGCTCAGG
391 CCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCAGG
3389927 CATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATT
1 CATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATT
** * *
3389992 GGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCTCCCTATGGATCCACAGCTTGCGCA
66 GGCACACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCA
* **
3390057 TCCCGTCTCTCTGGCCGACGTAGTGCCCTCCCGCCCGCCTGCCCGCACGTTTCATCAATTGGCTT
131 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCAACCG-CT-----CA--TTTCATCAATTGGCTT
* * ** *** * **
3390122 AGGCATACAGAGTTCATTCGCAGTCTAAGATTGGACCAGATTGAGGGTTGTAGTAGCAGGATCGA
188 AGGCATACAGAGTACATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAACAGCAGGATCGA
* * * * * * *
3390187 TAGCATGCAGAGGGGGACCAGGCCAATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
253 CAACACGCAAAGGGGGACCAGACCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
* * *
3390252 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAG
318 GCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAACCATACAA
* * * *
3390317 AGTTCATTCCCAGTCTCAGATCGAACCAGACCGAGGGTTGCGATAGCACATGCTGGGCTCGGG
383 AGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCAGG
3390380 CAT
1 CAT
3390383 ATGCTCGTGC
Statistics
Matches: 386, Mismatches: 62, Indels: 8
0.85 0.14 0.02
Matches are distributed among these distances:
445 150 0.39
446 2 0.01
451 2 0.01
453 232 0.60
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (445 bp):
CATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCAACCGCTCATTTCATCAATTGGCTTAGGCATAC
AGAGTACATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAACAGCAGGATCGACAACACGC
AAAGGGGGACCAGACCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCAC
GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAACCATACAAAGTTCATT
CCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCAGG
Found at i:3392271 original size:885 final size:888
Alignment explanation
Indices: 3390448--3394533 Score: 4744
Period size: 885 Copynumber: 4.6 Consensus size: 888
3390438 AACCTGACCG
* * *
3390448 GTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCCAATGGTCACAAAATCTTGTACACTTT
1 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * * *
3390513 GAATTTTT-GCTAAATCTTTTTGTGCATGCCAACAAAAATACAAGGATGACGTCTACCAAGTTGG
66 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * *
3390577 GGGCCAAAACTCCTTTCGAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTATG
131 GGGCCAAAACTCCTTT-GAAAAAATTTTAAAAAATCCCAAACCGTAAAAATTTTCAAAAATCATG
* * ** * *
3390642 AAAAATAGAAAACGAGTTGTCCTGCCACAAAAACTTCACGTAAAGGCTTAAGGGACCATGGTATG
195 AAAAATAGAAAACGAGTCGTCTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
3390707 AATTTTAACAAGCCATTAAAATGGCATTGGCACACAGAAATATTAAAGATGTGCCT-AACCCACC
259 AA-TTT-ACAAGCCATAAAAATGGCATTGGCACACAGAAATA-TGAAGATGTGCCTAAACCCA-C
* ** * * * *
3390771 CTACCACCTTTATCGATCC-CAGCTTTGCTTATCCCGTCACTCTGGCCGACGAAGT-ACCG-CCG
320 CTACCACC-CTATCGATCCACAGC-TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* *
3390833 --CGCCGCCCGCT-GTTTCAT-TGATGGCTTAGGCATACGGAG-TCATTTCCCAGGGTCTAAGAT
383 CCCGCC-CCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCA-TTCCCA--GTCTAAGA-
** * ** * * * * * *
3390893 TGGGACCGGATTTGAGGGTGCAGTAGTAGG--TAGGCAGCACATAGAAGGGGACCCGAACCGATC
443 TCAGACCAGA-CCGAGGTTGCGGTAGTAGGATTA-ACAGCACGTAGAGGGGGACCCG-ATCGATC
** * **
3390956 CTCAAGCTTACGCATCCCGCCCCTCTAGC-GGTGAGCACCCGCACGCTCGTTTCGTGGGTTGACT
505 C-CCGGCTTGCGCATCCCGCCCCTCTAGCTACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACT
* * *
3391020 TAGGCAATACGGAGGTTTCTTTCCCAGTCTAAGCATACGGAG-TCATTCCCAGTCTAAGATCGGG
569 TAGGC-ATACAGA-G-TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AG
* * * *
3391084 ACCGGGACCGAGGGTTGCGGGTAGCACATGGCT-GGCTTGGAGCATG-GCTGGTGCCGCA-TTTT
630 ACC-AGACCGAGGGTTGC-GGCAGCACAT-GCTGGGCTCGG-GCATGTGTTGGTGCCGCATTTTT
* * * * * *
3391146 CTTCGTCGGG----GT-A-C----CATCGTCGGAGAACTTGAC-CGCGGCATTGGGGTTCCGGGG
691 CTTCGTCGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTTCGGCG
**
3391200 ATC--GGGGG-CTAGGGGTGTGCGCACCTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
756 ATCGGGGGGGCCGGGGGGTGTGCG-A--TGA---GCGA---GTGCTGGTACTTGGCCCTTATATT
* *
3391262 GGCCCCCTATCCCTCATCAAA-CTTGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACA
812 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
3391326 AGTTTGCTGCCA
877 GGTTTGCTGCCA
*
3391338 GTAGCCATTAAAGTGTCTGAAATGGGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
1 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
3391403 GAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTG
66 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * ** * * **
3391468 GAGCCAAAAATAATTCTGAAATAATTTTAAAAAATCCCAAATCACAAAAATTTTCAAAAATCATG
131 GGGCCAAAACTCCTT-TGAAAAAATTTTAAAAAATCCCAAACCGTAAAAATTTTCAAAAATCATG
*
3391533 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGA
195 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
3391598 ATTTGCAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTATC
260 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
**
3391663 ACCCTATCGATCCACAGCTTGCGCATCTTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC
325 ACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC
* * * *
3391728 TCACGCTCGTTTCACCGGTTGGCTTAAGCATACGGAGTTCAGTCCCAGTCTAAGATCAGACCAGA
390 -C-CGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * * *
3391793 CCGATGGTTGGGGCAGTACGATTAACAGCACGTAGAGGGGGTCCCGACCGATCCCCGGCTTGCGC
453 CCGA-GGTTGCGGTAGTAGGATTAACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
* * * * *
3391858 ATCGCGCCCCTCTGGCTTACTGAGCGCACGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
517 ATCCCGCCCCTCTAGC-TACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
* * *
3391923 GTTCATTCCTAGTCTAAGCATACGGTA-TTCATTCCCAGTC-AAGATCAGATCGGACCGAGGGTT
581 GTTCATTCCCAGTCTAAGCATACGG-AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * * * *
3391986 ACGGCAGCACATGCTGGGCTCGGGCTTGTGATGGTGCCGTATTTTTCTTCGCTAGGGCACCATCA
645 GCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCG-TCGGGCACCATCA
* *
3392051 TCGGAGCATCGCCGGAGAACCTG-CTGGCGGCATTGGGGTTTCAGCGATCGGGGGGGTCGGGGGG
709 TCGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGG
3392115 TGTGCG-T-A-C-A-TG-TGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGA
774 TGTGCGATGAGCGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
*
3392173 GAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCA
839 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
3392223 GTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTC
1 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
3392288 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGATCACATCTACCAAGTTTG
66 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * **
3392353 GGGCCAAAAATTCTTTGAAAAAAATTTTAAAAAATCCCAAACCGTAAAAATTTTTGAAAATCATG
131 GGGCCAAAACTCCTTTG-AAAAAATTTTAAAAAATCCCAAACCGTAAAAATTTTCAAAAATCATG
* *
3392418 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGA
195 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* ***
3392483 ATTTACAACCCATAAAAATGGCATTGGCATTTAGAAATATGAAGATGTGCCTAAACCCACCTACC
260 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * *
3392548 ACACAATCAATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCC
325 ACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CC
* * * * * *
3392613 GCCCGCTCATTTCGTCAGTCGGCTTAGTCATATGGAGTTCATTACCAGTCTAAGATC-GAACC-G
389 -CCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAG
* * * * * * * *
3392676 AACTGAGGGATGCGATAGTAGGATTGATAGCACGTAGAGGAGGACCCGATCGATCCTCGACTTGC
452 -ACCGA-GGTTGCGGTAGTAGGATTAACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGC
* * * * * * *
3392741 GCATTCTGCCCCTCTAGTCAACTGAGCGCCCGCATGCT-TTTTCCGTGGGTTGAGTTAGGCATAT
515 GCATCCCGCCCCTCTAG-CTACTGAGCACCCGCACGCTCGTTT-CGTGGGTTGACTTAGGCATA-
* **
3392805 C-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATTGGACCAGACCGAGG
577 CAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * *
3392869 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGCTGTCGCATTTTTCTTCATCGGGGCACCA
642 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTC-GGGCACCA
* * * * ** *
3392934 TCGTCGGAGCATCGCCTGAGAACCTGACCGACGGCATTAAGGTTTCGGTGATCGGGGGGGCCGGG
706 TCATCGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGG
*
3392999 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTC
771 GGGTGTGCG---ATGA---GCGA---GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * *
3393064 ATCAAATCTGGGGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
827 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
3393126 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
1 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
3393191 GAGTTTTTGGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTG
66 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * ** * *
3393256 GGCCCAAAACTTCTTCTGAAAAAATTTTAAAAAAAT-CCAGAACCACAAAAAGTTTAAAAAATCA
131 GGGCCAAAACTCCTT-TGAAAAAATTTT-AAAAAATCCCA-AACCGTAAAAATTTTCAAAAATCA
* ** *
3393320 TGAAAAATAGAGAACGAGTTATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTAT
193 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
3393385 GAATTTACCAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTA
258 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
3393450 CCACCTTATCGATCCAC-GACGTGTGCATCCCGTCTCTCTGGCCGGCGTAGT--------GCCCG
323 CCACCCTATCGATCCACAG-CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* ** ** *
3393506 --CCCACTCGTTTCATTGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGG
387 CCCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * * *
3393569 ACCGAGAGTTGCAGTAGGAGGATTGACAACACATAGAAGGGGACCC-AGTCGATCCCTGGCTTGC
452 ACCGAG-GTTGCGGTAGTAGGATTAACAGCACGTAGAGGGGGACCCGA-TCGATCCCCGGCTTGC
* * * *
3393633 GCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCGTTGGTTGACTTAGGCATACA
515 GCATCCCGCCCCTCTAG-CTACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACA
* * * *
3393698 GAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAACGGT
579 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
* * * * * *
3393763 TGTGGTAGCACATGCTGGGCTCGGGCATGCGTTAGTGTCGTATTTTTCTTCGTCGGAGCACCATC
644 TGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGG-GCACCATC
** * * * * *
3393828 GCCGAAGCATCGTCGAAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
708 ATCGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGG
* *
3393893 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCTTATCCCTCAT
773 GTGTGCG---ATGA---GCGA---GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
3393958 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CA
829 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
3394017 GTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
1 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
3394082 GAGTTTTTAGCTGAATGTTTTTGTGCATCCCAACAAACATACAAGGATCACGTATACCAAGTTTG
66 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* **
3394147 GTGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTT-AAAAATTGT
131 GGGCCAAAACTCCTTT-GAAAAAATTTTAAAAAATCCCAAACCGTAAAAA-TTTTCAAAAATCAT
* ** *
3394211 GAAAAATAGAAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGATGATAGTAT
194 GAAAAATAG-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* ** ** *
3394276 GAATTTACAAGCCATAAAAAGGGCATTGGCACGTA-AAAGTATGAATTTGCGCCTAAACCCACCT
258 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA-TATGAAGATGTGCCTAAACCCACCT
* * *
3394340 ACCACCCTATCGATCCACGGCTGGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
322 ACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * *
3394405 --CCCGCTCATTTCGTCAATTGGCTGAGGCATACGGAG-TCATTCCCAGTCTAAGATCAGACCAG
387 CCCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * *
3394467 ACCGAGGGTTGCGGCAGTAGGA-T--CAGCACGTAGAGGGGGACACGATCGATCCCTGGCTTACG
452 ACCGA-GGTTGCGGTAGTAGGATTAACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCG
3394529 CATCC
516 CATCC
3394534 TACCCATATT
Statistics
Matches: 2758, Mismatches: 344, Indels: 183
0.84 0.10 0.06
Matches are distributed among these distances:
884 33 0.01
885 632 0.23
886 157 0.06
887 75 0.03
888 69 0.03
889 42 0.02
890 175 0.06
891 502 0.18
892 437 0.16
893 29 0.01
894 3 0.00
895 38 0.01
896 8 0.00
897 37 0.01
898 42 0.02
899 38 0.01
900 11 0.00
901 2 0.00
902 21 0.01
903 218 0.08
904 189 0.07
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (888 bp):
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
GGGCCAAAACTCCTTTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAATTTTCAAAAATCATGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCC
CGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
AGGTTGCGGTAGTAGGATTAACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
CGCCCCTCTAGCTACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCA
GCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGCACCATCATCGGAGC
ATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGA
TGAGCGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
Found at i:3393727 original size:26 final size:26
Alignment explanation
Indices: 3393691--3393743 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3393681 GTTGACTTAG
*
3393691 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
3393717 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3393743 G
1 G
3393744 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3399488 original size:26 final size:26
Alignment explanation
Indices: 3399459--3399511 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3399449 GTTGACTTAG
*
3399459 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
3399485 GCATACAGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3399511 G
1 G
3399512 ATCGGACAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3399952 original size:898 final size:893
Alignment explanation
Indices: 3398587--3401280 Score: 3762
Period size: 898 Copynumber: 3.0 Consensus size: 893
3398577 GTTGACGTAG
* * *
3398587 GCATACGAAGTTCATT-CCAAGTCTAAGATCAGACCAGACCGAGGGTTCCGGTAGCACATGCTGG
1 GCATACG-AGTTCATTCCCAA-TCTAAGATCGGACCAGACCGAGGGTT-TGGCAGCACATGCTGG
** * *
3398651 GCTCAGGCATGTGCTGGTGTGACTTTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCAGAG
63 GCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCG-CAGAG
* ** * ***
3398716 AACCTGTCCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCCAGGGAATTGTGCGCACATGATGT
127 AACCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
*
3398781 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
3398846 CA-CCCCTTAAAGAGCATTGGAGAATTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAA
*
3398910 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTT
320 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
3398975 GTCCATGCCAAAAAAA-ATACAAGGATGACGTCCACCAAGTTTGGGGACAAAACTCCTTTCGAAA
385 GTGCATGCCAAAAAAATA-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
3399039 TAATTTTACAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC
449 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC
*
3399104 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTATAAGCCATAAAAATGG
514 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATGG
* *
3399169 CATTGGCATGCAGAAATATGAAGATATCCCTAAACCAACCTACCACCCTATCGATCTACAGCTTG
579 CATTGGCATGCAGAAATATGAAGATGTCCCTAAACCAACCTACCACCCTATCGATCCACAGCTTG
* *
3399234 TGCATCCCATCTCTCTAGCCGACATAGTGCCCGCCTGTCCGCCCACTCGTTTCGTCGGTTGGCTT
644 TGCATCCCATCTCTCTGGCCGACATAGTGCCCGCCCGTCCGCCC-CTCGTTTCGTCGGTTGGCTT
* * *
3399299 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGTGGTAGCAGGATCGA
708 AGGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGTGGCAGCAGGATCGG
* * * * *
3399364 TAGCACAG-AAAGGGGGACCCGGTTGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGCTAAGC
773 CAGCAC-GCAAAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGCTGAGC
* *
3399428 ACTCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 ACACGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
3399485 GCATACAGAGTTCATTCCCATTCTAAGATCGGACAAGACCGAGGGTTGTGGCAGCACATGCTAGG
1 GCATAC-GAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTT-TGGCAGCACATGCTGGG
*
3399550 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGTAGA
64 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCAG-AGA
* * * * *
3399615 ACCTGACCGATAGCATTGGGGTTCCGACGATAGAGGGGGCCGGGGGGTGTGCGGACATGATGTGC
128 ACCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
3399680 GATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
3399745 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATTG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA-TG
*
3399810 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTATTTGT
322 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
3399875 GCGTGCCAAAAAAATAACAAGGATCACGTTTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
387 GCATGCCAAAAAAATAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
*
3399940 TTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTG
452 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTG
3400005 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATGGCAT
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATGGCAT
* * * * * *
3400070 TGGCACGCAGAAATATGAAGATGTACCC-AAACCCACCTACCACGCTCTCGATCCACGGCTTATG
582 TGGCATGCAGAAATATGAAGATGT-CCCTAAACCAACCTACCACCCTATCGATCCACAGCTTGTG
* * * * * *
3400134 CATCTCGTCTCTCTGGCCGGCGTAGTGCCCTCCCGTCCG---CTCGTTTCGTCAGTTGGCTTAGG
646 CATCCCATCTCTCTGGCCGACATAGTGCCCGCCCGTCCGCCCCTCGTTTCGTCGGTTGGCTTAGG
* *
3400196 TATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGCAG
711 CATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGTGGCAGCAGGATCGGCAG
*
3400261 CACGCAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACA
776 CACGCAAAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCG-CTGAGCACA
* *
3400326 CGCACGCTCGTTTTGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
3400380 ACATATGGAGTTCATTCCCAATCGAAGATTGGTCCAGACCGAGGGTTTCGACAGCACATGCTGGG
1 GCATA-CGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTT-GGCAGCACATGCTGGG
* *** * * * *
3400445 CTCGGGCATGTGCTGGTGCTGTATTTTTCTTCACTGGGGCACCATCATCGGAGCATCGCTGGAGA
64 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGC-AGAGA
* * * *
3400510 ACCTGGCAGCTGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGTGTG-GCACATGATGTGC
128 ACCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
3400574 GACGGGTGCTGGTACTTGGCCCTT-TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
3400638 CCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTACC-GATAGCCATTAAAGTGTCTGGAAT
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG-TAGCCATTAAAGTGTCT-GAAT
* *
3400702 GGGGACAAC--TTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCCGAATTTTTTT
321 GGGGAC-ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
3400765 GTGCATGCCAACAAAAATAA-AAGGATCACATCTACCAAGTTTGTGGCCAGAACTGCTTCCGAAA
385 GTGCATGCCAA-AAAAATAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * * *
3400829 AAATTTTAAAAATTCCCGAACCGTAAGAAGATTCAAAAATCGTGAAAAATAGAAAACGAGTCACC
449 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC
* * *
3400894 TTGCCATGAAACTTCACGAGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
514 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATGG
* * * *
3400959 TATTGGCTTGCAAAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACAGCTTG
579 CATTGGCATGCAGAAATATGAAGATGTCCCTAAACCAACCTACCACCCTATCGATCCACAGCTTG
* * * * * *
3401024 CGAATCCCCTCTCTTTGGCCGACATAGTGCCCGACCGCCCGCCCGCCCGCTCGTTTTGTCGGTTG
644 TGCATCCCATCTCTCTGGCCGACATAGTG--C--CCGCCCGTCCGCCC-CTCGTTTCGTCGGTTG
* * * * * * *
3401089 GCTTAGGCATATAGAGTTCATTCCCAGTCTCAGATCGGATCGGA-TCGAGGGTTGCGACAGTAGG
704 GCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACT-GAGGGTTGTGGCAGCAGG
* * ** * * * *
3401153 ATCGGCAGCATGCTAAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCTGTCGCTCTGGTCGGC
768 ATCGGCAGCACGCAAAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGG-CCGC
* * * *
3401218 TGAGCACCCGCACGTTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
832 TGAGCACACGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
3401280 G
1 G
3401281 ATCGGACTGG
Statistics
Matches: 1596, Mismatches: 173, Indels: 52
0.88 0.10 0.03
Matches are distributed among these distances:
891 2 0.00
892 294 0.18
893 110 0.07
894 171 0.11
895 209 0.13
896 10 0.01
897 87 0.05
898 526 0.33
899 9 0.01
900 176 0.11
901 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
GCATACGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTTGGCAGCACATGCTGGGCT
CAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCAGAGAACC
TGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAAAAAAATAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATGGCATTGGC
ATGCAGAAATATGAAGATGTCCCTAAACCAACCTACCACCCTATCGATCCACAGCTTGTGCATCC
CATCTCTCTGGCCGACATAGTGCCCGCCCGTCCGCCCCTCGTTTCGTCGGTTGGCTTAGGCATAT
GGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGC
AAAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGCTGAGCACACGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:3402023 original size:26 final size:26
Alignment explanation
Indices: 3401993--3402045 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3401983 GTTGACCAAG
*
3401993 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3402019 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3402045 G
1 G
3402046 ATCGGACTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3402876 original size:26 final size:26
Alignment explanation
Indices: 3402840--3402909 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
3402830 TGACTTAGGA
3402840 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
*
3402866 ATACGGAGTTCATTCCTAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
3402892 ATACGGAGTTCATTCCCA
1 ATACGGAGTTCATTCCCA
3402910 ATCAAGAGCA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:3403798 original size:26 final size:26
Alignment explanation
Indices: 3403768--3403820 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3403758 GTTGACTTAG
*
3403768 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
3403794 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3403820 G
1 G
3403821 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3404168 original size:902 final size:903
Alignment explanation
Indices: 3402381--3421848 Score: 15713
Period size: 902 Copynumber: 21.4 Consensus size: 903
3402371 TCTTTTTTCA
* * * *
3402381 AAGGATCACGTCTACGATGTTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCCCGAAC
1 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
* * * * * *
3402446 CGTAAAAACTTTTAAAAATCGTGAAAAATAAAAAACGAGTTGTCTTGCCATGAAACTTCACGTGA
66 CATAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
*
3402511 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCACGTAGAAATATGA
131 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
* * ** *
3402575 AGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCACATCTAGTCTCTCAGGCCG
196 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * **
3402640 GCGTAGTGCCCGCCCGCCCACCCACCCGCCCTCTCATTTCGTCGGTTGGCTTAGGCATACAAAGT
261 ACGTAGTGCCCGCCCGCCCGCCCACCCG----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * * *
3402705 TCATTCCTAGTTTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATTGGTAG----C-----
322 TCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGG
* * * * * * * * * * *
3402761 ---ATCC-A--GATCCCTGGCTTACGCATCCCGCCCTTCTGGCCGGTTGAGTGGCCACTCACTCA
387 GGGACCCGATCGATCCCTGGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* *
3402820 TTTCTTGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAG
452 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA----T--
* *
3402885 TCTAAGCATACGGAGTTCATTCCCAATCAAGAGCAGACCAGACCGAGGGTTGCGGCAGCACATGC
511 TC----C---C--AG-----T--C--T-AAGATCAGACCAGACCGAGGGTTGCGGAAGCACATGC
* * * * * * * *
3402950 TGGGCTTGGGCTTGCGATGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATTGCCG
557 TGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCG
* * ** ** *
3403015 GAGAACCTGACCGGTGACATTTTGGTTCCGGTGATCGGAGGGGCCGGGGGGGTGTGCGCACATGA
622 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGA
* * *
3403080 TGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAA
687 TGTGCGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
3403145 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTTTG
751 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
3403210 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATCAATTTT
816 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
3403275 TTTGTGCATACCAACAAAAGTAT
881 TTTGTGCATGCCAACAAAAATAC
* *
3403298 AAGGATCACGTCTTCCAGGTTTGGGGCCAAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAA
1 AAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAA
*
3403363 CCATAAAAAGTTTCAAAAATAGTGAAAAATAGGAAACGAGTCGTCTTGCCATGAAACTTCACGTG
65 CCATAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
** * *
3403428 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAACAGAACTATT
130 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* *
3403493 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCTCGTCTCTCTGGCC
195 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* *
3403558 GACGTAGTGCCCGCCCGCCCGCCCACTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGATCA
260 GACGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * *
3403623 TTCCCAGTCTAAGATCGGATCGGATCGAGCGTTGCGACAGTAGGATCGGCAACACATAGAGGGGG
325 TTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGG
* * * * * *
3403688 ACCCGATTGATCCCTGACTTGCGCATCCCTACCCTCTGGCCAGCTGAGCGCCCACACGCTTGTTT
390 ACCCGATCGATCCCTGGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * * *
3403753 CATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCT
455 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * *
3403818 AAGATCAGACCAGACCGAGGGTTGCGGAAGCACATGCTGGGCTTGGACATGTGCTGGTGCCGCAT
520 AAGATCAGACCAGACCGAGGGTTGCGGAAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCAT
* * * * *
3403883 TTTTCTTCGTCGGGGCACCATTGTCGGAGCATCATCGGAGAACCTAACCAGCGGCATTGGGGTTC
585 TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTC
* * * *
3403948 TGACGATCGGAGGGGCCGAGGGGGTGTGCGCATATGATGTGCGAT-G-GCTGGTACTTGGCCCTT
650 CGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGTGCTGGTACTTGGCCCTT
* * *
3404011 ATATTGGTCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTCAGATT
715 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * **
3404076 TTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTTTGAAATGGGGACACACTTTTCAAATGGTCAC
780 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * * * * *
3404141 AAAATCTTTTACACTTCGAGTTTTTAGATCAATTTTTTTGTACATACCAACAAAAATAT
845 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* *
3404200 AAGGGTCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAAC
1 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
* *
3404265 CACAAAAAGTTTCAAAAATGGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
66 CATAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
*
3404330 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
131 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
* *
3404395 AGATGTGCCTAAACCCCCCTACCA-CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGACCG
196 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * *
3404459 GCGTAGT----GCCCGCCCG----CCCGCTTGTTTCATCGGTTGGCTTAGGCATATGGAGTTTAT
261 ACGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
** * * * * * * * **
3404516 TCCCAGTCTAAGATTAGACCAGTCTGAGGGTTGCGACAGCAGGATTGACAGCACGTAGAGGGGGA
326 TCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGA
* * * * *
3404581 CCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTC
391 CCCGATCGATCCCTGGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * * *
3404646 GTGGGTTGACTTAGGTATACGGAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTTCCAGACTA
456 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * ** * * * * **
3404711 AGATCAGACCGGATCGAGGGTTGCAGCTGCACATGCTAGGCTTGGGCTTGTGCTACTGCCGCATT
521 AGATCAGACCAGACCGAGGGTTGCGGAAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATT
* * * * * *
3404776 TTTCTTCGTCAGGGTACCATCACCGAAGCATCGCCGGAGAACCTGACCGGTGGCATTGGGGTTCC
586 TTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC
*
3404841 GACGATCGGGGGGGCC--------GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCT
651 GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT-GGTGCTGGTACTTGGCCCTT
*
3404898 ATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
715 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
3404963 TTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAC
780 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
3405028 AAAATCTTGTACACTTCGAGTGTTTAGCTGAATTTTTTTGTGCATGCCAACAAAATTAC
845 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * *
3405087 AAGGATCACTTCTACCAAGTTTGGGGTCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
1 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
* *
3405152 CGTAAAAAGTTT-AGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
66 CATAAAAAGTTTCA-AAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
*
3405216 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
130 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
** *
3405281 AAGATGTGCCTAAACCCACCTACCACCCTATCGATTAACAGCTTGCGCATCCCGTCTCTCTGGCC
195 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * *
3405346 GACGTAGTGCCCGCCCGTCCGCCCTCCCGCTCGTTTCGCCGGTTGGCTTAGGCATACGGAGTTCA
260 GACGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* ** * *
3405411 TTCCTAGTCTAAGATTAGATCGGACTGAGGGTTGCGACAGCAGGATCGGCAGCACACAGAGGGGG
325 TTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGG
* ** * * * * *
3405476 ACCCGA-CGGATCCCCGGCTTATGCATCCCGCCCCTTTGGTCGACTGAGCGCCCGCACGCTCATT
390 ACCCGATC-GATCCCTGGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * **
3405540 TCGTGGGTTAACTTAGGCATAC-GAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCTTGTC
454 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
** * * * * *
3405604 TAAGATC-GGGCAGACCGAAGGTTGTGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCA
519 TAAGATCAGACCAGACCGAGGGTTGCGGAAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCA
* * * *
3405668 TTTTTCTTCAG-CGGGGTACCATCGCCGAAGCATCGTCAGAGAACCTGACCGGTGGCATTGGGGT
584 TTTTTCTTC-GTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGT
* * *
3405732 TCCGATGATCGGGAGGGCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
648 TCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT-GGTGCTGGTACTTGGCC
* *
3405797 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAGAACATTTGAG
712 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * *
3405862 ATTTCACAGGTTTGCTACCAGTAGCCATTAAAGTGTCGGAAATGGGGACACTTTTTTCAAATGGT
777 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
3405927 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
842 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * *
3405989 AAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTT-CAAAAAAATTTTAAAAAATCCTGAAC
1 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
** * **
3406053 CGCAAAAATTTTTGAAAATCAG-GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
66 CATAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
3406117 AAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCACGTAGAAATATG
130 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* * *
3406182 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCGTGCGCATCCCGTCCCTCTGGCC
195 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* ** * *
3406247 GACGAAGTGCCCGCCCGCCCG----CCCGCTCGTTTCGTCGACTAGCTTACGCATACGGAGTTCA
260 GACGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * *
3406308 TTCCCAGTCTAAGATTGGA-CTAGACTGAGGGTT------GC---A---GCAG----C--A----
325 TTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGG
* * * * * * *
3406350 G----GATC---CCC-GGCTTGCGCATCCCGCCTCACTGGCCAGCTGAGTGCCCGCACCCTTGTT
389 GACCCGATCGATCCCTGGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * *
3406407 TCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATACGGACTTCATTCCCAGTC
454 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* ** * * **
3406472 TAAGATCGGACTGGACCGAGGGTTGCGGTAGCACATGCTAGGCTCGGGCATGTCCTGGTGCCGCA
519 TAAGATCAGACCAGACCGAGGGTTGCGGAAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCA
** * * * *
3406537 TTTTTCTTCACCGGGGCAGCATTGCCGGAGCATCGTCGGAGAATCTGACCGACGGCATTGGGGTT
584 TTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
* ***
3406602 CCGGCG-TCGGGGGGG-TAAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
649 CCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT-GGTGCTGGTACTTGGCCC
* * *
3406665 TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCATACCCCCTTAATGAGCATTTGAGA
713 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
3406730 TTTTACAGGTTTACGGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
778 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
3406795 ACAAAATCTTGTACACTTCGAGTTTCTCA-CTAAATTTTTTTGTGCATGCCAACAAAAATAC
843 ACAAAATCTTGTACACTTCGAGTTT-TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * ** *
3406856 AAGGATCACGTTTACCAAGTTTGGGTCCAAAACTCCTTTCAAAAAAATTAAAAAAAATCCCAAAC
1 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
* ** *
3406921 CGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGATTCGTCTTGCCATGAAACTTCACGTGA
66 CATAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * * *
3406986 AAGCTGAAGGGACAACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
131 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
** * *
3407051 AGATGTGCCTAAACCCACCTACCACTTTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGTCG
196 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * * **
3407116 ACGTAGTGCCCGCCCACCCGCCCGCCCACTCATTTTGTCATTTGGCTTAGGCATACGGAGTTCAT
261 ACGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * ** * *
3407181 TCCCAGTCTAAGATTGGACCTGACCGAGGGTTGCGGCAATAGGATCGGCAGCACCCAGAGAGGGA
326 TCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGA
* * * *
3407246 CCCGATCGAT-CCTCGGCTTGCGCATCTCGCCCCTCTAGCCGGCTGAGCGCCCGTACGCTCGTTT
391 CCCGATCGATCCCT-GGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * **
3407310 CGTGGGTTAACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCT
455 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * * * **
3407375 AAGATCAGACCGGACTGAGGGTTGC-GACAGTACATGCTGGGCTCGGGCATATGCTGGTGTCATA
520 AAGATCAGACCAGACCGAGGGTTGCGGA-AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCA
* * * * * * * * *
3407439 TTTTTCTTC-ACTGAGGCACCATCACCAGAGTATTG-CTGGAGAATCTGACCGACGACATTGGGG
584 TTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGTC-GGAGAACCTGACCGGCGGCATTGGGG
* * ** * *
3407502 TTACGACGATC-GGGGGGTCGGGGGGGTGTGCTTACATGATGTACGATGGGTGCTGGCACTTGGC
647 TTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT-GGTGCTGGTACTTGGC
* * * *
3407566 CCTTATATTGGCCCTCTAT-CCTCATCAAACCTCGACAACTCACACCCCTTTAAAGAGCATTTAA
711 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
3407630 GATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGG
776 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * **
3407695 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTTTGCATGCTGACAAAAATAC
841 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * * * * **
3407758 AAGCATCATGTCTACCAAGTTTGGGCCCAAAAATCCCTCCGAAAAAATTTTGGGACATTTTGTTA
1 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT---A-A-----AAA
*** * * * * * *
3407823 ATTTAGAAGCCATAAAAATGGCATTGGCACGTAGAAATA-TG-AAGATGTGCTTAAACCCA--CC
57 ATCCCGAA-CCATAAAAA--G--TT-TCA---A-AAATAGTGAAAAAT-AG---AAAACGAGTCG
*** * * * *** * * ** * *
3407884 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT-ATGG-CCAGCGTAGTGCCCACCTTC
108 T-CTTGCC-AT-GA---A--ACTT-CACGTGAAGGCT-TAAGGGACCATTGTA-TG---A-ATTT
* * ****** ** * * ** ** * * ** ** *
3407947 CCATCCGCC-CGCTCGTTTCGTCGGTTCGCTTAGGCATACG--GA-GT-TC-ATTCCCAGTGTAA
158 ACA--AGCCATAAAAATGGCATTGGCACGC--AGAAATATGAAGATGTGCCTAAACCCA-CCTAC
* * ** * * * * ** ** * * ** * * *** ***
3408006 GATCGAACTGGATCGA-GGGTTGCGGCAGCAGGATC-GACAGGACG-CAAAGGGACC-ATTGTAT
218 CACCCTA-TCGATCCACGGCTTGC-GCATCCCG-TCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
*** *** * **** ** ** * * ** *
3408067 GAATTTAAAAGC-CATAAAAAT-GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCA-C
280 G--CCCACCCGCTCGT-TTCGTCGG--TTGG--CTTAGGCATACG--GA-GT-TC-ATTCCCAGT
** * ** * * * * ** * * ** * ***
3408129 CTACCACCCTATC-GATCC-ACGGCTTG-TGCATCCTGTCTCTCTGGCTGCATAGTGCCTGCCCG
333 CTAAGATCGGATCGGA-CCGA-GGGTTGCGGCA-GCAG--GATC-GGCAGCACACAG--AGGGGG
* * *** * ***** ** * * *
3408191 -CCCGTTCATTTTGTTGATTGGCTTAG-GCAT-ACGGAGTTCATTCCCAGTCTAAGATCAGACCA
390 ACCCG---A--TCGATCCCTGGCTT-GCGCATCCCTCCCCTC-TGGCC-GGCT--GAGC-G-CCC
*** * * * * ** * ** **
3408253 G-ACTGAGGGTTGCAGTAGCAGGATCGAC--A-GCACACCGAGGGGGACCTGGCC-GATCCTCGG
443 GCAC-GCTCGTTTC-GT-G--GG-TTGACTTAGGCATA-C--GGAGTTCATTCCCAG-T-CTAAG
* * * * * * * * * * * ** * * * *
3408313 CTTGCGCA-TCCTGCCCCTTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGAGTTAG
497 CATACGGAGT--T---CATTC--CCAGTCTAAG-ATCAG-AC-C-AG-ACCGAGGGTTGCG-GAA
* *** ** ** ** *
3408377 GCATACGGAGTTCATTCCCAGTCTAAGCATACGTAGTTCATGCC-CAGTCTAAGATCAGATCGGA
549 GC--AC--A-TGC-TGGGC--TC-GGGCAT--GT-GTTGGTGCCGCA-T-T--TTTC--TTC-G-
* * * * * * *
3408441 CCGAGGGGTACGGTAGCACATGCTAGGCTCGG-GCATGTGTTGGTACCATATTTTTCTTCGTCGA
594 TC--GGGG--C---A-C-CAT-C---GC-CGGAGCAT-CGTCGG-A-GA-A-----CCT-GAC-C
** * * * * * * **** * *
3408505 GGCACCATCGTCGGAGCATCGCCGGACAACCTGACCGGCGGCATTAGGGTTCTGGCGATCGGGGG
634 GGCGGCAT--T-GG-G-GT-TCC-GACGATC-G--GGGGGGCCGGGGGGGTGT-GCG--C-----
* ** * * * ** ***
3408570 GCCGGGGGTGTACGCACATGATGTGCGATGGGTGC-TGGTACTTGGCCCTTATATTGGCCCCCTA
681 -AC-ATGATGT--GC-GATG--GTGC--T-GGTACTTGGCCCTT-ATA------TTGGCCCCCTA
3408634 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
729 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
3408699 CCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAAGCTTGTACAC
794 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
3408764 TTTGAGCTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAAAAC
859 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATAC
* * **
3408810 AAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTAAAC
1 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
* ** *
3408875 CGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
66 CATAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
*
3408940 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
131 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
* * * * *
3409005 AGATGTGCCTAAACCCACCTACCAGCCTATCGATCTACGGCTTACGCATCCCGTCTCTCTCGCGG
196 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * ** * ** *
3409070 CATAGTACCTGCCAGCCCGCCCGCCTGCCTGCTCGTTTTATCGGTTGGCTTAGGCATATGGAGTT
261 -A-CGTA-GTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* ** * * * ** *
3409135 CATTCCCAGTCTAAGATCAGATCGGATGGAGGGTTGCGGTAGAAGGATCGACAGCACGTAAAGGG
323 CATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGG
* * * *
3409200 GGACCCGA-CCATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGTTCGT
388 GGACCCGATCGATCCCTGGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* * * * * * *
3409264 TTCGTGGGTTGACTTAGGCATACAGACTTCATTCCCAGTTTAAGTATACAGACTTCATTCCCAAT
453 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * *
3409329 CGAAGATCGGACCGGACCGAGGGTTAC-GACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCG
518 CTAAGATCAGACCAGACCGAGGGTTGCGGA-AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCG
* * ** * * *
3409393 CACTTTTCTTCGTTGTTGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGAGG
582 CATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGG
* * *
3409458 TTCTGACGATCGGGGGGGCC-GGGGGGTGTGCACACGTGATGTGCGATGGGTGCTGGTACTTGGC
647 TTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT-GGTGCTGGTACTTGGC
* *
3409522 CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAGCATTTGA
711 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
3409587 GATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGCCTGAAAT-GGGACACTTTTTTCAAATGG
776 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
*
3409651 TCACAAAATCTTGTACACTTTGAGTTTTTTAGCTGAAGTTTTTTT-TGCATGCCAACAAAAATAC
841 TCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATAC
* * * * * * *
3409715 AAGGATCATGTCTACCAGGTTTTGAGACAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAAC
1 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
* * * * *
3409780 CGTAAAAAGTTTTAAAAATCGAGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGA
66 CATAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * **
3409845 AGGCTTGAGGGACCATTGTATGAGTTTACAAGCCATAAAAATGGCATTCGCACATAGAAATATGA
131 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
*
3409910 AGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
196 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * *
3409975 ACGTAGT---C-CCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCAT
261 ACGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * ** *
3410036 TCCCAGTCGAAGATCAGACCGGACTAACGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGA
326 TCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGA
** ** * ** * * *
3410101 CCCGGCCGATCCCCAGCTTGCGCAT-CCTGCCCTCTCACCGACTGAGCACCCGCACGCTAGTTTC
391 CCCGATCGATCCCTGGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * *
3410165 ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTATACGGAGTTCATTCCCAGTCCA
456 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
** * * * * *
3410230 AGATTGGACTAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGAGTTGGTGCCGTATT
521 AGATCAGACCAGACCGAGGGTTGCGGAAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATT
* * * *
3410295 TTTCTTCGTCGGGGCACCAACG-C----CA------GAGAACCTGACAGACGGCAGTGGGGTTCC
586 TTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC
* *
3410349 GATGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGAACTTGGCCCTT
651 GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT-GGTGCTGGTACTTGGCCCTT
*
3410413 ATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
715 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
3410478 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
780 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
3410543 AAAATCTTGTACACTTCGAGTTTTTAGGTGAATTTTTTTGTGCATGCTAATAAAAATAC
845 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * * *
3410602 AAGGATCACGTCTACCATGTTTGGGGACTAAATTCCTTCCAAAAAAATTTTAAAAAATCCTGAAC
1 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
**
3410667 CGCAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
66 CATAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
**
3410731 AAGGCTTAATTGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA-AAACTAT
130 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA-TAT
* *
3410795 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGACGGCTTCCGCATCCCGTCTCTCTGGC
194 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* *
3410860 C-AGCGTAGTGCCCGCCCGCCCGTCCGCCTACCCGTCTGCTCGTTTCGTGGGTTGGCTTCGGCAT
259 CGA-CGTAGTGCCCGCCCGCCCG--C-CC-A-CC--C-GCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * *
3410924 ACGAAGTTCATTCCCAGTCTAAGATCAGA-CTGGATCGAGGGTTGTGGCAACAGGATCGGCAGCA
315 ACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* * * * * * * * *
3410988 CGCAGAGGGGGACCTG-GCTAAT-CGTCGGCTTGCACATCCCGCCCCTCTGGCCGACTGAGCACC
379 CACAGAGGGGGACCCGATC-GATCCCT-GGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAGCGCC
*
3411051 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
442 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
** *
3411116 TCATTCCCAGTCTAAGATC-GAACTGGACCGAGGGTTGC-GACAGCACATGCTAGGCTCGGGCAT
507 TCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGA-AGCACATGCTGGGCTCGGGCAT
** * *
3411179 GTGTTGGTGCCGCATTTTTCTTCG-CTGGGGCACCATCATCGGAGCATCGTCAGAGAACCTGACT
570 GTGTTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACC
* * * * *
3411243 AGCGGCATTGGGGTTTCGATGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGTGATGGGT
634 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT-GGT
*
3411308 GCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
698 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
3411373 AAAGAGTATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTAAAATGGGGACAC
763 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
3411438 TTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATGTTTTTGTGCATGCC
828 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
3411503 AACAAAAATAC
893 AACAAAAATAC
* * *
3411514 AAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTCAAAAATCTCGAAC
1 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
* * *
3411579 CATAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGATTCGTCTTGCCATGAAACTTCACGTGA
66 CATAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* *
3411644 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGA
131 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
* ** * * * *
3411709 A-ATGTGCTTAAACCCACCTACCAGGCTATCGATCTACGGCTTACGTATCCCGTCTCTCTCGCCG
196 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * * *
3411773 GCGTAGTG---G-TCACCCG----CCCGCTCATTTCGTCGATTGGATTAGGCATACGGAGTTCAT
261 ACGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * *
3411830 TCCCAGTCTAAGATCGGACCGGACCGAGTGTTGCGGCAGCAGGATTGGCAGCACACA-AAGGGGA
326 TCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGA
* * * *
3411894 CCCGATCGATCCCCGGCTTGCGCAT-CCTGCCCCTCTGGCCGGTTGACCGCCCGTACGCTCGTTT
391 CCCGATCGATCCCTGGCTTGCGCATCCCT-CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * *
3411958 CGTGGGTTGACTTAGGCACAGGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTC-
455 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
*
3412022 AAGCATACGGAGTTCATTCCCAATCTAAGTTCAGACCGAACCGAGGGTTGC-GACAGCATATGCT
520 AAG-AT-C--AG----------A-C------C--A--G-ACCGAGGGTTGCGGA-AGCACATGCT
* * * *
3412086 GGGCTCGGGCTTGTGTTGGTGCGGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCATCGG
558 GGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGG
* * * * * **
3412151 TGAACCTAATCGACGACATTATGGTTCCGAC-ATCGGGGGGGCC-GGGGGGTGTGCGCACATGAT
623 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
*
3412214 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
688 GTGCGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
3412279 CACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
752 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
3412344 AATGGGGGCATTTTTTTCAAGTGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTT
817 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
3412409 TTGTGCATGACAACAAAAATAC
882 TTGTGCATGCCAACAAAAATAC
* * ** * * *
3412431 AAGGATTACGTATACCAAGTTTGGGATCAAAAATCCTTCC-AAAAAATTTTTAAAAATCCCAAAC
1 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
** *
3412495 CATAAAAAGTTTTGAAAATCA-TGAAATATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
66 CATAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* ***
3412559 AAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCATAAAGAAATATG
130 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* * *
3412624 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGTATCCAGTCTCTCTGGCC
195 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * *
3412689 GACGTAGTGCCCGTCCGTCCGCCCACCCGCTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCA
260 GACGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * *
3412754 TT-CTAGTCTAAGATAGGATCGGA-CGAAGGGTTGTGGCAGCAGGATCGGTAGCACACAGAGGGG
325 TTCCCAGTCTAAGATCGGATCGGACCG-AGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGG
* ** * * * * *
3412817 GACCTGGCCGATCCCTGGCTTGTGCATCCCACACCTCTGGCCGACTGAGCACCCGCACGCTCGTT
389 GACCCGATCGATCCCTGGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* *
3412882 TCGTAGGTTGACTTAGGCATACGGAGTTCAATCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
454 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * *
3412947 TAAGATCGGACCAGACCGAGGGTTACGGCAA-CACATGCTGGGCTCAGGCATGTGTTGGTGCCGC
519 TAAGATCAGACCAGACCGAGGGTTGCGG-AAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGC
* * ** * *
3413011 ATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACTTGACCGGCGGCACTGGGGT
583 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGT
* * *
3413076 TCCGGCGATCGGGGGGGTCGGGGGGGGTGTGCGCACATGATGTGCGATGAGTGCTAGTACTTGGC
648 TCCGACGATCGGGGGGG-CCGGGGGGGTGTGCGCACATGATGTGCGATG-GTGCTGGTACTTGGC
* * *
3413141 CCTAAAATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
711 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
3413206 GATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGG
776 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * *
3413271 TCATAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTGTGTGCATGGCAACAAAAATAC
841 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * *
3413334 AAGGATCACGTCTACCAAGTTTGGTGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCCC-AAG
1 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAA-
* *
3413398 CCGTAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAACTTCACG
65 CCATAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACGAGTCGTCTTGCCATG-AAACTTCACG
* * * * *
3413462 TGAAAGCTTAATGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGTATGCAGAAATA
128 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* * * * * * * *
3413527 TAAAGATGTGCCTTAACCCACCTACGACCCTATCGATCCATGACTTACGCATCCCATCTCTCTGA
193 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * *
3413592 CCGGCGTAGT--------GCCCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGTATACGAAGTT
258 CCGACGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
** * * * * * * * * *
3413645 CATTCCCAGTCTAAGATCAAATCAGACCAAGGGTTGTGACAACAGGATCGACAGCACGCAAAAGG
323 CATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGG
** * * * *
3413710 GGACCCGGCCGATCCCCGGCTTACGCATCCCTCCCCTCTGGCCGGTTGAGCGCCCGCACACTCGT
388 GGACCCGATCGATCCCTGGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
3413775 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
453 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * *
3413840 CTAAGATCGGACCAGACCGAGGGTTGC-GACAGCACATGCTAGGCTCAGGCATGTGTTGGTGCCG
518 CTAAGATCAGACCAGACCGAGGGTTGCGGA-AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCG
** * * * * *
3413904 CATTTTTCTTCACCGAGGC-CCTATCGCCGGAGCATCGTCAGAGAACTTGATCGGCGGCATTGAG
582 CATTTTTCTTCGTCGGGGCACC-ATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
* *
3413968 GTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGG
646 GTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT-GGTGCTGGTACTTGG
* * *
3414033 GCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAATAGCATTTG
710 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
3414098 AAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGGCACTTTTTTCAAATG
775 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
*
3414163 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACGAAAATAC
840 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * *
3414227 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAAC
1 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
* ** *
3414292 CTTAAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTG
66 CAT-AAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
3414357 AAGGCTTAA--G------G---G--------A--C----------CATT--------G---TATG
130 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* * *
3414380 AAGATGTGCCTAAACCCACCTACCACCCTATCAAGCCACGGCTTGCGCATCCCATCTCTCTGGCC
195 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* *
3414445 GACGTAGTGCTCGCCCGCCCACCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
260 GACGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * *
3414510 TTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCAGTAACACATAGAGGGGG
325 TTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGG
* * * * * * *
3414575 ACTCGGTCTAT-CCTCGGCTTGCGCA-ACCTGCCCCTCTGGCCGGTTGAGCACCCGCAGGCTCGT
390 ACCCGATCGATCCCT-GGCTTGCGCATCCCT-CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
3414638 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
453 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * * *
3414703 CCAAGATCGGTCCAGACCGAGGGTTGCGGGAGCACATGCTAGGCTCGGGCATGTGTTGGTGCTGC
518 CTAAGATCAGACCAGACCGAGGGTTGCGGAAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGC
** * * * *
3414768 ATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGTGAACCTGATCGGAGGCATTGGGGT
583 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGT
* * *
3414833 TCCGACGATC-GGGGGGTCGGGGGGGCGTGCGCACATGATGTGCGATGGGTTCTGGTACTTGGCC
648 TCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT-GGTGCTGGTACTTGGCC
* *
3414897 CTTATATTGGACCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
712 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
3414962 ATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGAGTCTGAAATGGGGACACTTTTTTCAAATGGT
777 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
*
3415027 CACAAAATCTTGTACACTTCGAG-TTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATAC
842 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
** *
3415088 AAGGATCACGTCTACCAAGTTTGGGGAAAAAACTCCTTGCAAAAAAATTTTAAAAAATCCCGAAC
1 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
*
3415153 CACAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
66 CATAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
3415217 AAGGCTTAA--G------G---G--------A--C----------CATT--------G---TATG
130 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* * * *
3415240 AAGATGTGCCTAAACCCACCTATCACCCTATCAAGCCACGGCTTGCGCATCCCATCTCTCTGGCC
195 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* *
3415305 GACGTAGTGCTCGCCCGCCCACCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
260 GACGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * *
3415370 TTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCAGTAACACATAGAGGGGG
325 TTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGG
* * * * * * * *
3415435 ACTCGGTCTAT-CCTCGACTTGCGCA-ACCTGCCCCTCTGGCCGGTTGAGCACCCGCAGGCTCGT
390 ACCCGATCGATCCCT-GGCTTGCGCATCCCT-CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* *
3415498 TTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
453 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * *
3415563 CTAAGATC-GAATCGGACCGAGGGTTG-TGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGTC
518 CTAAGATCAG-ACCAGACCGAGGGTTGCGGA-AGCACATGCTGGGCTCGGGCATGTGTTGGTGCC
* **
3415626 GCATTTTTCTTCG-CTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCCACGGCATTGG
581 GCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGG
** * * *
3415690 GGTTCCGGTGATCGGGGGGGCCAGGGGGGTGTGCTCACATGATGTGCGATGGGTGCTAGTACTTG
645 GGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT-GGTGCTGGTACTTG
* *
3415755 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTGATACCCCCTTAAAGCA-CATT
709 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG-AGCATT
3415819 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA-TGTCTGAAATGGAGG-CACTTTTTTCAA
773 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG-GGACACTTTTTTCAA
* *
3415882 ATGGTCACAAAATCTTGTACACTTTGAG-TTTTAACTGAATTTTTTTGTGCATGCCAACAAAAAT
837 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
3415946 AC
902 AC
* * * *
3415948 AAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCAT-CGAAAAAATTTTAAAAAATCCCGGAC
1 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
** * * *
3416012 CATAAAAAGTTTTGAAAATCGTGAAAAATGGAAAACGAGTCGTCTTGCCATGAAACTTCACCTGA
66 CATAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * * *
3416077 AGGCTTAAAGGACCATTATATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAAAAATATGA
131 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
*
3416142 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCG
196 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * *
3416207 --GT-GT---AG--TGCCCG----CCCGTTCGTTTCGTCGGTTGGCTTAGGTATACGGAGTTCAT
261 ACGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * ** **
3416260 TCCCAGTCTAAGATCAGA-CTGGACCGAGGGTTGTGGTAGCAAGATCGGCAGCATGCAGAATGGG
326 TCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGG
* * * * *
3416324 ACCCGATCGATCCCCGGCTTGCGCAT-CCTGCCCCGCTGGTCGGCTGAGCACCCGTACGCTCGTT
390 ACCCGATCGATCCCTGGCTTGCGCATCCCT-CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * *
3416388 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAACCATACGGAGTTAATTCCCAGTC
454 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * *
3416453 TAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCA
519 TAAGATCAGACCAGACCGAGGGTTGCGGAAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCA
* * * *
3416518 TTTTTCTTCGTCGAGGCACCATCGTCGAAGCATCGTCGGAGCACCATCGGAGAACCTGACCGACG
584 TTTTTCTTCGTCGGGGCACCA---TC---G---C--CGGAGCATCGTCGGAGAACCTGACCGGCG
* * *
3416583 GCATTGGGGTTTCGATGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
638 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT-GGTGCTG
* * *
3416648 GTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACTTCAAGAACTCACACCCCCTTAAAG
702 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
3416713 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGAGTCTGAAATGGGGACACTTTT
767 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * ** ** * * *
3416778 TTCAAATGGTCACAAAATCTTGTACACAT-GA-TTTGT-GATG--GGTGCTGGTACTTGTCC--C
832 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CCAAC
**
3416836 --TTATA-
896 AAAAATAC
** ** * * * * * ** * * * *
3416841 TTGGCCCCCTAC-CCTCATCAAACCTCTAGAACACACACCCCCTT-AAATAGAATTTGAGATTTT
1 AAGG--ATC-ACGTCT-A-CCAA-GTTTGGGGC-CAAAACTCCTTCCAA-A-AA----A-ATTTT
**** * * *** * ** * *** ** **
3416904 ACAGGTTTGCTG--CCAGTAGCTA--TT--AAAGT-GTCTAAAATGGGGTCAC-TTTTTTCTAAT
52 A-AAAAATCCCGAACCA-TAAAAAGTTTCAAAAATAGTGAAAAAT-AGAAAACGAGTCGTCT--T
* ** * ** * * * * * * *
3416961 GATCACAAAATCTTGTACACTTCG-AGTTTTTAGCGA-AATT-T-T--TTTGTGCATGCCAACAA
112 G-CCATGAAA-C-T-T-CACGT-GAAGGCTTAAGGGACCATTGTATGAATT-TACAAGCC-ATAA
* * * ** ** * * * * * **** **
3417020 AAAT-ACA-AGG-A-TCA-AGTCTACCAAGTTTGGGTCC-AAA-ACTCCTTCCAAAAAAAT-TTT
169 AAATGGCATTGGCACGCAGA-AATATGAAG-ATGTG-CCTAAACCCACCTACC-ACCCTATCGAT
** *** * **** * * ** ** **** *** **
3417077 AAAAAATCTTGAACCCCAAAAAGT-TTTGAAAATTGTG-AAAAATAGAAAACGAGTTGTCTTG-C
230 -CCACGGCTTG---CGCATCCCGTCTCT-----CTG-GCCGACGTAGTGCCCG-CCCG-CCCGCC
* ** * * * ** * * * *
3417139 CA--TGAAAC--TTC-AC-GTTAAGGCTTAAGGGACCAT-TGTA-TGAATTTACAAGCTATAAAA
283 CACCCG-CTCGTTTCGTCGGTT--GGCTT-A-GG--CATACGGAGTTCA-TTCCCAG-TCT-AAG
* * * *** * * * * * * ** *** *
3417196 ATCGCATTGG-CATGTAGAAAT-CTGAAG-ATG-T-GCCTA-AACCCA-TCGACCACCCTATCGA
338 ATCGGATCGGAC-CG-AGGGTTGCGGCAGCAGGATCGGC-AGCACACAGAGGGGGACCCGATCGA
* * * *
3417254 TCCACT-GCTTGCGCATCCCGTCTCTCTGGCCGGCGCAGTGCCTGCGCGCCCGCTCGCCCGCTCG
400 TCC-CTGGCTTGCGCATCCC-TC-CCCT--CTGGC-C-G-G-CTGAGCG--C-C-CGCACGCTCG
* * * ****
3417318 TTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAG-ATCCGACCGGACCGAGGGT
452 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT---A-CGGA--GTTCAT
* * * * ** * * ** *
3417382 TGCGACAG-C-AGGATC-GA-TAGCACGCAGAGGG-GGAC-CTAGCTTGTACATCCCGCCCATCT
511 T-C-CCAGTCTAAGATCAGACCAG-AC-C-GAGGGTTG-CGGAAGC----ACATGCTGGGC-TCG
* ** * *** * * *
3417441 GGC-CG-ACTGAGTGCC-CGTACGCTCATTTCGT-GGGTTGACTTAGGCAT--ACAGAGTTCATT
565 GGCATGTGTTG-GTGCCGCAT-TTTTC--TTCGTCGGG--G-C--A-CCATCGCCGGAG--CA-T
* ** * * * * *** * * *** * * * * * *
3417500 C-CCGGTTTAAGCAT-A-TGGAGTTCATTCCCAGTT--TAAGATCGGATCGGACTGAGAGATGCA
617 CGTCGG-AGAA-CCTGACCGGCG-GCATT-GGGGTTCCGACGATCGGGGGGGCCGGGGGGGTG-T
* * * * *** *** * *
3417560 GCAGTAAATGCTGGGCTTGA-GCATGTGCTGGTGCCACATT-TTTCTTCA-CCGGGGCACC-ATC
677 GC-GCACATGATGTGC--GATG---GTGCTGGT---AC-TTGGCCCTT-ATATTGGCCCCCTATC
** * * * * *** * *** * ** * *** * **
3417621 GTTGGAGC-ATCGC-CAGAGAACTTGACCAATGGCGTTGGGGTTCCGACGATCGGGGGGGTCAGG
731 CCT-CATCAAAC-CTC-GAGAAC-TCA-C-ACCCCCTTAAAG---AG-C-ATTTGAGATTTTACA
** * * * * * * ** *
3417684 GGGGTG-TACGCACATGATGTGCGATGAATGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCC
785 GGTTTGCT--GC-CA-G-T-AGCCATTAAAG-T-GT-C-T-G-----AAATGGGGACACT-T---
** *** ** * * * ** **
3417748 TCATCAAACCTTGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTA-C--AGGTTTGCTG-
830 TTTTCAAA---TG-G---TCACAAAATCTTGTACA-C-TTCGAGTTTTTAGCTGAATTTTTTTGT
* ** * *
3417809 CCAGTAGCC-ATTAAAGTGTC
886 GCA-T-GCCAACAAAAAT-AC
* * ** * * ** * * * * ***
3417829 TGAAATGGGGA-CACTTTTTTCAA--AT-GGTCACAAAA-T-CTT---GTACACTTTGATATTTT
1 ---AA---GGATCACGTCTACCAAGTTTGGGGC-CAAAACTCCTTCCAAAAAAATTTTAAAAAAT
* * *** *** * ** * ** ** ** * * ***
3417885 AGCTGAATTTTTTTATGCATGCCAACAAAAAGACAAGGATCACGTCTACCAAGAT--TGGGGCCA
59 -CCCGAACCATAAAAAG--TTTCAA-AAATAGTGAAAAAT-A-G-AAAACGAG-TCGTCTTGCCA
* *** *** ** ** * ** * **
3417948 -AAAATCTTTC-CCAAAAAATTTAAAAGATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAA
116 TGAAA-C-TTCACGTGAAGGCTTAAGGGA--CC--ATTGTATGAA-TTT-ACAAGCCAT-AAAAA
** ** * * ** *** ** *
3418011 TAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTG
172 T-GGCATTG-G-CA-C--G-CA-GAAA--T-A--TGAA-G---ATGTG-CC--TAAACCCACCTA
* * * * ** * * * ***
3418076 CAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGAGATTAAACCC-AC-CTACCACC
217 CCA-CCCT----ATCG-A-T--C-CA-CG-GCT-T---G-CG-CA-T---CCCGTCTCT-CTGGC
* ** ** * * ** * * *
3418139 CTATCGATCCACG-GCTTGCGCATCCCGTCTCTCTAGCTGGCATAGTGCCCGCCGCCCGCCCGCC
259 CGA-CG-T--A-GTGCCCGC-CCGCCCG-CCCACCCGCT--CGT--T---------TCG-TCG--
* * * *
3418203 CGTTTTGTCGGTTGGCTTGGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG
301 -G---T-T--G---GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGG
* ** * * ** * * *
3418268 TTGTGGCAGCAGGATCAACAGCACGCAGAAGGGGACCCGGCCGATCCCCGGCTTGCCCATCCCGC
356 TTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCTC
* *
3418333 CCCTCTGGCCGG-TAGAGCGTCTGCACGCTCGTTTCGTGGGTTGAC-T-----T----AG---A-
421 CCCTCTGGCCGGCT-GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * *
3418383 ---CA---T----AT--GGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGATTGCGGCAG
485 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGAAG
* * ** * *
3418436 CACATGCTGGGCTCAGGCATGTGCTGGTGCCGCGCTTTTCTTCGTCGGGGCACCATCGTCGAAGC
550 CACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGC
* * * * * *
3418501 ATCG-CTGAAGAACCAGACCGACGGCATTGGGGTTCCGATGATCGGGGTGGCCGGGGAGGTGTGC
615 ATCGTC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
3418565 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
679 GCACATGATGTGCGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
3418630 TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
743 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * *
3418695 AGTGTCTGAAATGAGGACAC-TTTTTCAAAAGGTCACAAAATCTTGTACACTCCGAGTTTGTAGC
808 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
*
3418759 TGAATTTTTTTGTGCATTCCAACAAAAATAC
873 TGAATTTTTTTGTGCATGCCAACAAAAATAC
* * *
3418790 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCTCGAAC
1 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
** * * * * *
3418855 CGCAAAAGGTTTCAAAGATCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGA
66 CATAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* *
3418920 AGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
131 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
*
3418985 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCG
196 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * *
3419050 ACGTAGTCCCCGCCCGCCCTCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCAT
261 ACGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* ** * * * * * * *
3419115 TCTCAGTCTAAGATAAGACCAGATCGACGGTTGCTGCAGCAGGATCAGCAGCACGCAGAGGGGGA
326 TCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGA
* ** * * *
3419180 CCTGGCCGATCCCCGGCTTGCGCATCCCACCCCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
391 CCCGATCGATCCCTGGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
** *
3419245 GTGGGTTGACTTAGTTATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTA
456 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * *
3419310 AGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCA-T
521 AGATCAGACCAGACCGAGGGTTGCGGAAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATT
* * *
3419374 TTTCTTC-TCCAGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTC
586 TTTCTTCGT-CGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTC
* * ** * *
3419438 CGACAATCGCGGGGGCCGGGGGGGTGTGCTTACATGATGTGTGACGGGTGCTGGTACTTGGCCCT
650 CGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA-TGGTGCTGGTACTTGGCCCT
* * *
3419503 TATATTGGCCCCCTATCCCTCATCAAACCCCGAGAACTCACACCCCCTTACAGAGCATTCGAGAT
714 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * * ** *
3419568 TTTATAGGATAGCTGCCAGTAGTTATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCA
779 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
*
3419633 CAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATAC
844 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * *
3419692 AAGCATCACATCTACCAAGTTTGGGGCCAGAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
1 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
* * *
3419757 CAAAAAAATTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTCTTGACATGAAACTTCACGTG
66 CATAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
3419821 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATG
130 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* * * * *
3419886 AAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGATTGTGCATCCCGTCTCTCTGGTC
195 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * *
3419951 GGCGTAGTGCCCGCCCGCCCGCCCA----CTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCA
260 GACGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * *
3420012 TTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGG
325 TTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGG
* * * * * *
3420077 ACCCGATCGATCCCCGGCTTGCACAT-CCTGCCGCTCTGGCTGGTTGAGCGCCCGCATGCTCGTT
390 ACCCGATCGATCCCTGGCTTGCGCATCCCT-CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
*** * *
3420141 TCGTGGGTTGACTTAGGCATATACAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCTCAGTC
454 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * * * * *
3420206 TAAGATC-GTATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCTGC
519 TAAGATCAG-ACCAGACCGAGGGTTGCGGAAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGC
* *
3420270 ATTTTTCTTCG-CTGGGGCACCATCGTCGGAGCATCGTTGGAGAACCTGACCGGCGGCATTGGGG
583 ATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGG
* * *
3420334 TTCCTG-CGATCGGTGGGGCC-GGGGGGTGTGTGCACATGATGTACGATGGGTGCTGGTACTTGG
647 TTCC-GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT-GGTGCTGGTACTTGG
* *
3420397 CCCTTATATTGGCCCCATATCCCTCTTCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
710 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
3420462 AGATTTTAAAGGTTTGCTGCCA-TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
775 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
3420526 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTT-TGCATGCCAA-ACAAAATA
840 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTTGTGCATGCCAACA-AAAATA
3420589 C
903 C
* * *
3420590 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGGAAAAAATTTTCAAAAATCCAGAA
1 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAAATTTTAAAAAATCCCGAA
* * * * *
3420655 CTATAAAAGGTTTCAAAAATCGTGAAAAATAGGAAATGAGTCGTCTTGCCATGAAACTTCACGTG
65 CCATAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * *
3420720 AAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATG
130 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* ** * * * **
3420785 AGGATGCACTTAAACCCACCTACCACCCTATCGGTGCACGGCTTGCGCATCCTATCTCTCTGGCC
195 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * *
3420850 --C-----GCCCGCCCGCCCGCCCA----CTCGTTTTGTCGGTTTGCTAAGGCATACGGAGTTCA
260 GACGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* ** * ** * * **
3420904 TTCCCAGTCTAAGATCAGG-CCGGATTGAAGGTTATGGTAGCAGGATCGGTAGCATGCAGAGGGG
325 TTCCCAGTCTAAGATC-GGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGG
* * * * * * * * * *
3420968 GACCCGACCGAT-CCTCGGCATACACATCCCGCCTCTCTGGTCGGCTGAGAGCCCGTACGCTCAT
389 GACCCGATCGATCCCT-GGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* *
3421032 TTCGTGGGTTGACTTAGGCATACCGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGT
453 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * * * *
3421097 CTAAGATCAGGCTAGACCGAGGGTTGC-AACAGCAGATGCTGGGCTCGAGCATGTGCTGGTGCCC
518 CTAAGATCAGACCAGACCGAGGGTTGCGGA-AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCG
* * * ** *
3421161 CATTTTTCTTCGTTGGGACACCATCGCCGGAGCATCGTTGGAGAACCTGACCCACGACATTGGGG
582 CATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGG
* **
3421226 TTCCTACGATCGATGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
647 TTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT-GGTGCTGGTACTTGGC
* * * *
3421290 CCTTATATTGGCCCCTTATCCCTCGTCAAACCTCAAGAACTCACACCCACTTAAAGAGCATTTGA
711 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * *
3421355 GATTTTATAGGTTTGTTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
776 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * * *
3421420 TCACAAAATCATGTACACTTCTAGTTTGTAGCTGAATTTTTTTATGCATGCCAACAGAAATAC
841 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * *
3421483 AAGGATCACGTCTACCAAGTTTGGGG-CAGAAACCCCTTCCAAAAAAATTTCAAAAAATGCAGAA
1 AAGGATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAA
* * * * *
3421547 CCGTAAAAAGTTTCAAAAATCA-TGAAATATAGAAAATGAGTCATCTTGCCATCAAACTTCACGT
65 CCATAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * *
3421611 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAGATATAT
129 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
* * *
3421676 CAAGATGTGCCTAAAGCTACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
194 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* ** * * * *
3421741 CGGCGTAGTGCTTGCCTGCCCGCCCGCCCGCTTGTTTTGTCGGTTGGCTTAGGCATACGGAGTTC
259 CGACGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* *
3421806 ATTCCCAGTCTAAGATCAGA-CTGGACCGAGGGTTGCGACAGCA
324 ATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGCAGCA
3421849 CATGCTGGGC
Statistics
Matches: 15067, Mismatches: 2544, Indels: 1894
0.77 0.13 0.10
Matches are distributed among these distances:
851 67 0.00
854 1 0.00
859 97 0.01
860 637 0.04
861 237 0.02
862 205 0.01
863 324 0.02
864 3 0.00
867 314 0.02
868 272 0.02
869 106 0.01
870 1 0.00
871 2 0.00
872 63 0.00
873 1 0.00
874 1 0.00
875 1 0.00
877 141 0.01
878 3 0.00
879 1 0.00
880 2 0.00
881 2 0.00
882 2 0.00
883 2 0.00
884 23 0.00
885 5 0.00
886 14 0.00
887 848 0.06
888 88 0.01
889 276 0.02
890 14 0.00
891 13 0.00
892 987 0.07
893 485 0.03
894 578 0.04
895 134 0.01
896 184 0.01
897 167 0.01
898 710 0.05
899 411 0.03
900 507 0.03
901 565 0.04
902 1391 0.09
903 534 0.04
904 88 0.01
905 604 0.04
906 129 0.01
907 23 0.00
908 19 0.00
909 8 0.00
910 4 0.00
911 110 0.01
912 413 0.03
913 11 0.00
914 2 0.00
915 79 0.01
916 146 0.01
917 355 0.02
918 146 0.01
919 228 0.02
920 33 0.00
921 25 0.00
922 16 0.00
923 17 0.00
924 66 0.00
925 162 0.01
926 8 0.00
927 5 0.00
928 8 0.00
929 16 0.00
930 116 0.01
931 3 0.00
932 57 0.00
933 29 0.00
934 26 0.00
935 26 0.00
936 9 0.00
937 52 0.00
938 19 0.00
939 21 0.00
940 18 0.00
941 34 0.00
942 26 0.00
943 9 0.00
944 16 0.00
945 22 0.00
946 7 0.00
947 5 0.00
948 10 0.00
949 8 0.00
950 28 0.00
951 17 0.00
952 4 0.00
953 18 0.00
954 6 0.00
955 19 0.00
956 19 0.00
957 22 0.00
958 21 0.00
959 22 0.00
960 22 0.00
961 22 0.00
962 21 0.00
963 11 0.00
964 1 0.00
965 6 0.00
966 2 0.00
967 6 0.00
968 19 0.00
969 3 0.00
970 2 0.00
971 9 0.00
972 17 0.00
973 10 0.00
974 14 0.00
975 8 0.00
976 1 0.00
977 3 0.00
978 13 0.00
979 17 0.00
980 3 0.00
981 16 0.00
982 13 0.00
983 28 0.00
984 12 0.00
985 17 0.00
986 6 0.00
987 7 0.00
988 25 0.00
989 8 0.00
990 7 0.00
991 7 0.00
992 1 0.00
993 6 0.00
994 8 0.00
995 10 0.00
996 30 0.00
997 10 0.00
998 2 0.00
999 16 0.00
1000 5 0.00
1001 12 0.00
1002 18 0.00
1003 16 0.00
1004 24 0.00
1005 11 0.00
1006 24 0.00
1007 6 0.00
1008 8 0.00
1009 7 0.00
1010 8 0.00
1011 19 0.00
1012 12 0.00
1013 7 0.00
1014 10 0.00
1015 20 0.00
1016 26 0.00
1017 17 0.00
1018 6 0.00
1019 14 0.00
1020 29 0.00
1021 14 0.00
1022 11 0.00
1023 15 0.00
1024 220 0.01
1025 252 0.02
1026 203 0.01
1027 212 0.01
1028 193 0.01
1029 159 0.01
1030 256 0.02
1031 233 0.02
1032 224 0.01
1033 289 0.02
1034 148 0.01
1035 133 0.01
1036 165 0.01
1037 324 0.02
1038 205 0.01
1039 171 0.01
1040 648 0.04
1041 223 0.01
1042 152 0.01
1043 134 0.01
1044 93 0.01
1045 391 0.03
1046 203 0.01
1047 126 0.01
1048 662 0.04
1049 632 0.04
1050 133 0.01
1051 245 0.02
1052 208 0.01
1053 195 0.01
1054 190 0.01
1055 128 0.01
1056 149 0.01
1057 78 0.01
1058 220 0.01
1059 54 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
CATAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
ACGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGA
CCCGATCGATCCCTGGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
AGATCAGACCAGACCGAGGGTTGCGGAAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATT
TTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC
GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGTGCTGGTACTTGGCCCTTA
TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
Found at i:3404698 original size:26 final size:26
Alignment explanation
Indices: 3404662--3404712 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3404652 TGACTTAGGT
*
3404662 ATACGGAGTTCATTTCCAGTCTAAGC
1 ATACGGAGTTCATTTCCAGACTAAGC
3404688 ATACGGAGTTCATTTCCAGACTAAG
1 ATACGGAGTTCATTTCCAGACTAAG
3404713 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTTCCAGACTAAGC
Found at i:3406462 original size:26 final size:26
Alignment explanation
Indices: 3406423--3406483 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
3406413 GTTGACTTAG
* *
3406423 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACGGACTTCATTCCCAATCTAA
*
3406449 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAATCTAA
3406475 G-AT-CGGACT
1 GCATACGGACT
3406484 GGACCGAGGG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
24 6 0.19
25 2 0.06
26 24 0.75
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAATCTAA
Found at i:3408414 original size:26 final size:26
Alignment explanation
Indices: 3408377--3408429 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3408367 GTTGAGTTAG
*
3408377 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
*
3408403 GCATACGTAGTTCATGCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
3408429 G
1 G
3408430 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATGCCCAGTCTAA
Found at i:3409906 original size:905 final size:901
Alignment explanation
Indices: 3408052--3421848 Score: 8999
Period size: 892 Copynumber: 15.3 Consensus size: 901
3408042 ACAGGACGCA
*
3408052 AAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
** * *
3408117 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCTGTCTCTCTGG-CTGCATAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCATAG
* * * * *
3408181 -TGCCTGCCCGCCCG----T--TCATTTTGTTGATTGGCTTAGGCATACGGAGTTCATTCCCAGT
131 TTGCCAGCCCGCCCGCCCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * *
3408239 CTAAGATCAGACCAGA-CTGAGGGTTGCAGTAGCAGGATCGACAGCACACCGAGGGGGACCTGGC
196 CTAAGATCAGACCGGATC-GAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGC
* *
3408303 CGAT-CCTCGGCTTGCGCATCCTGCCCCTTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGG
260 CGATCCCT-GGCTTGCGCATCCCGCCCC-TCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGG
* * *
3408367 GTTGAGTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGTAGTTCATGCCCAGTCTAAGAT
323 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * ** * **
3408432 CAGATCGGACCGAGGGGTACGGTAGCACATGCTAGGCTCGGGCATGTGTTGGTACCATATTTTTC
388 CGGACCGGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTC
* * * * * * *
3408497 TTCGTCGAGGCACCATCGTCGGAGCATCGCCGGACAACCTGACCGGCGGCATT-AGGGTTCTGGC
453 TTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGA-GGTTCCGAC
*
3408561 GATC-GGGGGGCC-GGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
517 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
3408624 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
582 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
3408689 AGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
647 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * * * *
3408754 GCTTGTACACTTTGAGCTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAAAACAAGGATCAT
712 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCAC
*
3408819 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTAAACCGTAAAAAG
776 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAG
** *
3408884 TTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
841 TTTCAAAAATC-AGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
3408946 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
* * *
3409011 GCCTAAACCCACCTACCAGCCTATCGATCTACGGCTTACGCATCCCGTCTCTCTCG-CGGCATAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCATAG
** *
3409075 TACCTGCCAGCCCGCCCGCCTGCCTGCTCGTTTTATCGGTTGGCTTAGGCATATGGAGTTCATTC
131 T---TGCCAGCCCGCCCGCC--CCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * ** *
3409140 CCAGTCTAAGATCAGATCGGATGGAGGGTTGCGGTAGAAGGATCGACAGCACGTAAAGGGGGACC
191 CCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACC
* *
3409205 CGACC-ATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGTTCGTTTCGT
256 CGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGT
* * * * * * * *
3409269 GGGTTGACTTAGGCATACAGACTTCATTCCCAGTTTAAGTATACAGACTTCATTCCCAATCGAAG
321 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
3409334 ATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGCACTTT
386 ATCGGACCGGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTT
* ** * *
3409399 TCTTCGTTGTTGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGAGGTTCTGA
451 TCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGAGGTTCCGA
* *
3409464 CGATCGGGGGGGCCGGGGGGTGTGCACACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
516 CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
3409529 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTA
581 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
3409594 CAGGTTTGCTACCAGTAGCCATTAAAGTGCCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAA
646 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
3409658 ATCTTGTACACTTTGAGTTTTTTAGCTGAAGTTTTTTT-TGCATGCCAACAAAAATACAAGGATC
711 ATCTTGTACACTTCGAG-TTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * * * * *
3409722 ATGTCTACCAGGTTTTGAGACAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGTAAAA
774 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAA
* *
3409787 AGTTTTAAAAATCGAGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTT
839 AGTTTCAAAAATC-AGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * * *
3409851 GAGGGACCATTGTATGAGTTTACAAGCCATAAAAATGGCATTCGCACATAGAAATATGAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
* * * *
3409916 GCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCATAG
* * * *
3409981 -TCCCCGCCCGCCCG-CCC-GCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGT
131 TTGCCAGCCCGCCCGCCCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * *
3410043 CGAAGATCAGACCGGA-CTAACGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGC
196 CTAAGATCAGACCGGATC-GAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGC
** * ** * * *
3410107 CGATCCCCAGCTTGCGCATCCTG-CCCTCTCACCGACTGAGCACCCGCACGCTAGTTTCATGGGT
260 CGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
* * *
3410171 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTATACGGAGTTCATTCCCAGTCCAAGATTG
325 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
** * * *
3410236 GACTAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGAGTTGGTGCCGTATTTTTCTT
390 GACCGGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTT
* * * * *
3410301 CGTCGGGGCACCAACG-C----CA------GAGAACCTGACAGACGGCAGTGGGGTTCCGATGAT
455 CGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGAGGTTCCGACGAT
*
3410355 CGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTGG
520 CGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
*
3410420 CCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
585 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
3410485 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
650 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
3410550 TGTACACTTCGAGTTTTTAGGTGAATTTTTTTGTGCATGCTAATAAAAATACAAGGATCACGTCT
715 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * * ** *
3410615 ACCATGTTTGGGGACTAAATTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTC
780 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTC
3410680 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
845 AAAAATCA-GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
** *
3410738 AATTGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA-AAACTATGAAGATG
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA-TATGAAGATG
* * * *
3410802 TGCCTAAACCCACCTACCACCCTATCGATCGACGGCTTCCGCATCCCGTCTCTCTGGCCAGCGTA
65 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCATA
* * * *
3410867 G-TGCCCGCCCGCCCGTCCGCCTACCCGTCTGCTCGTTTCGTGGGTTGGCTTCGGCATACGAAGT
130 GTTGCCAGCCCG--C--CCG----CCC--CTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * *
3410931 TCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGTGGCAACAGGATCGGCAGCACGCAGAGG
185 TCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGG
* ** * * *
3410996 GGGACCTGGCTAAT-CGTCGGCTTGCACATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTC
250 GGGACCCGGCCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTC
*
3411060 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
314 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* *
3411125 GTCTAAGATCGAACTGGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCC
379 GTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCC
** * *
3411190 GCATTTTTCTTCG-CTGGGGCACCATCATCGGAGCATCGTCAGAGAACCTGA-CTAGCGGCATTG
444 GCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGA-CGGCATTG
* * * *
3411253 GGGTTTCGATGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTT
507 AGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
3411318 GGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGTATT
571 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * *
3411383 TGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTAAAATGGGGACACTTTTTTCAAA
636 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * *
3411448 TGATCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATGTTTTTGTGCATGCCAACAAAAATA
701 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * *
3411513 CAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTCAAAAATCTCGAA
766 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAA
* *
3411578 CCATAAAAAGTTTCAAAAATC-GTAAAAAATAGAAAACGATTCGTCTTGCCATGAAACTTCACGT
831 CCGTAAAAAGTTTCAAAAATCAG--AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
3411642 GAAGGCTT
894 GAAGGCTT
***
3411650 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAA-ATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
* ** * * * *
3411714 GCTTAAACCCACCTACCAGGCTATCGATCTACGGCTTACGTATCCCGTCTCTCTCGCCGGCGTAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCATAG
* * * * *
3411779 -TG---G-TCACCCG-CCC-GCTCATTTCGTCGATTGGATTAGGCATACGGAGTTCATTCCCAGT
131 TTGCCAGCCCGCCCGCCCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * **
3411837 CTAAGATCGGACCGGACCGAGTGTTGCGGCAGCAGGATTGGCAGCACACA-AAGGGGACCCGATC
196 CTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGCC
* * * * * *
3411901 GATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGTTGACCGCCCGTACGCTCGTTTCGTGGGTT
261 GATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
* * *
3411966 GACTTAGGCACAGGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCAAGCATACG
326 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT----C-TA--
* * *
3412031 GAGTTCATTCCCAATCTAAGTTCAGACCGAACCGAGGGTTGCGACAGCATATGCTGGGCTCGGGC
384 -AG----------ATC---G----GACCGGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGC
* * * * * * *
3412096 TTGTGTTGGTGCGGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCATCGGTGAACCTAAT
431 ATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
* *
3412161 CGACGACATT-ATGGTTCCGAC-ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGG
496 CGACGGCATTGA-GGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
3412224 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
560 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
3412289 TAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGGCA
625 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
3412354 TTTTTTTCAAGTGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGA
690 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * ** * *
3412419 CAACAAAAATACAAGGATTACGTATACCAAGTTTGGGATCAAAAATCCTTCC-AAAAAATTTTTA
755 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* ** *
3412483 AAAATCCCAAACCATAAAAAGTTTTGAAAATCATGAAATATAGAAAACGAGTCGTCTTGCCATGA
820 AAAATCCCAAACCGTAAAAAGTTTCAAAAATCA-GAAAAATAGAAAACGAGTCGTCTTGCCATGA
3412548 AACTTCACGTGAAGGCTT
884 AACTTCACGTGAAGGCTT
* * *
3412566 AAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCATAAAGAAATATGAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
* * * * * *
3412631 GCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGTATCCAGTCTCTCTGGCCGACGTAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCATAG
* * * * * * *
3412696 -TGCCCGTCCGTCCGCCCACCCGCTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATT-CTA
131 TTGCCAGCCCGCCCG-CC-CCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * *
3412759 GTCTAAGAT-AGGATCGGA-CGAAGGGTTGTGGCAGCAGGATCGGTAGCACACAGAGGGGGACCT
194 GTCTAAGATCA-GACCGGATCG-AGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCC
* * * * *
3412822 GGCCGATCCCTGGCTTGTGCATCCCACACCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTA
257 GGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTG
*
3412887 GGTTGACTTAGGCATACGGAGTTCAATCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
322 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * *
3412952 TCGGACCAGACCGAGGGTTACGGCAACACATGCTGGGCTCAGGCATGTGTTGGTGCCGCATTTTT
387 TCGGACCGGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTT
* * ** * * * * *
3413017 CTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACTTGACCGGCGGCACTGGGGTTCCGGC
452 CTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGAGGTTCCGAC
* * * * *
3413082 GATCGGGGGGGTCGGGGGGGGTGTGCGCACATGATGTGCGATGAGTGCTAGTACTTGGCCCTAAA
517 GATCGGGGGGG-C-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
3413147 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
580 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
3413212 ACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCATAA
645 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * *
3413277 AATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTGTGTGCATGGCAACAAAAATACAAGGATCA
710 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * *
3413342 CGTCTACCAAGTTTGGTGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCCCAAGCCGTAAAAA
775 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAA
* *
3413407 GTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAACTTCACGTGAAAGCTT
840 GTTTCAAAAATCA-GAAAAATAGAAAACGAGTCGTCTTGCCATG-AAACTTCACGTGAAGGCTT
* * * ** *
3413471 AATGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGTATGCAGAAATATAAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
* * * * * *
3413536 GCCTTAACCCACCTACGACCCTATCGATCCATGACTTACGCATCCCATCTCTCTGACCGGC---G
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCATAG
* * *
3413598 -T---AG--TGCCCG-CCC-GCTCGTTTCGTCGGTTGGCTTAGGTATACGAAGTTCATTCCCAGT
131 TTGCCAGCCCGCCCGCCCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * * * * * * * *
3413655 CTAAGATCAAATCAGACCAAGGGTTGTGACAACAGGATCGACAGCACGCAAAAGGGGACCCGGCC
196 CTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGCC
* * * * * *
3413720 GATCCCCGGCTTACGCATCCCTCCCCTCTGGCCGGTTGAGCGCCCGCACACTCGTTTCGTGGGTT
261 GATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
3413785 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
326 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* *
3413850 ACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCAGGCATGTGTTGGTGCCGCATTTTTCTTC
391 ACCGGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTC
** * * * * *
3413915 ACCGAGGC-CCTATCGCCGGAGCATCGTCAGAGAACTTGATCGGCGGCATTGAGGTTCCGACGAT
456 GTCGGGGCACC-ATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGAGGTTCCGACGAT
* * *
3413979 CGGGGGGGTCGGGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGGCCTTATATTG
520 CGGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * *
3414044 GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAATAGCATTTGAAATTTTACAG
584 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
3414109 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGGCACTTTTTTCAAATGGTCACAAAATC
649 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
*
3414174 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACGAAAATACAAGGATCACGTC
714 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* *
3414239 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCTTAAAAAAGTT
779 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGT-AAAAAGTT
* *
3414304 TCAAAAATCCTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTT
843 TCAAAAAT-CAGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *** ** * ** * * ** *
3414364 AAGGGACCATTGTATGAA--GATGTGCC-T--AAA-CCCACCTACCACCCTATCAAGCCACG--G
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA-TTGGCACAC-A-GAA-ATATGAAG
* * * * * * ** *
3414421 CT-TGCGC--ATCCCATCTCTCTGGCCGA-CGTAGT-GCTCGC-CCGCCCACCCA-CCCGCTCGT
62 ATGTGC-CTAAACCCA---C-CT-ACC-ACCCTA-TCGATC-CACGGCTTACGCATCCCG-TC-T
* ** * ** ** ** * * * ** *
3414479 TTCGTCGGTTGGCTTAG--G-CA-TACG-GAGTTCATTCCCAGTCTAAGATCGGAT--C---GG-
116 CTC-T-GGCCGGCATAGTTGCCAGCCCGCCCGCCCCTGCTC-GT-TTCG-TCGGTTGGCTTAGGC
* * * ** * * ** * * * * ***
3414533 A-CCGAGGGTT--GTGGCAG-C-AGGATCAGTAACACATAGAGGG-GGAC-TCGGTCTATCCTCG
176 ATACG-GAGTTCATTCCCAGTCTAAGATCAG-ACCGGATCGAGGGTTG-CGGCAG-C-AGGATCG
* * *** ** * *** * * ** **
3414591 GCTTG--CGCA-ACCTGCCCCTCTGGCCGGT---TGAGCACCCGCAGGCTCG--TTTCGTGGGTT
236 GC-AGCACACAGAGGGGGACC-C-GGCCGATCCCTG-GCTTGCGCA-TCCCGCCCCTC-T-GGCC
* * ** * * * *** * *** *
3414648 GACTTAGGCATACGGA-GTTC-ATTC-CCAG-T--CTAAGCAT-ACGGAGTTCATTCCCAGTCCA
294 GGCTGA-GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* ** * ** * * ** * * * * ** *
3414706 AG-AT-C-G-GTCCAGACCGAGGGT-TG--CGGGAGCACATGCTA-GGCT-CG--GGCATGTGTT
358 AGCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCGGA-CCGAGGGTTGCGACAGCACATGCT
* **** * * * *** * * * *
3414760 GGTGCT-GCATTTTTCTTCACCGGGGCAC-CATCGTCGGAGCATCGTCGGTGAACC-T-GATCGG
421 AG-GCTCGGGCATGTGTT----GGTGC-CGCAT--T--TTTCTTCGTCGGGGCACCATCG-CCGG
* ** ** * * *** * * ** * *
3414821 AGGCAT--T-GGGGTTCC-GA-CGATCGGGGGGTCGGGGGGGCGTGCGCA-CATGATGTG-CGAT
475 A-GCATCGTCGGAGAACCTGACCGA-C--GGCATTGAGGTTCCG-ACG-ATC-GGGGGGGCCG-G
* * * ** ** ** ** * ** * * **
3414879 GGGTTCTG-GTAC-T--TG-GCCCT-TATATTGG-ACCCTTATCCCTCATCA---AACCTCGAGA
532 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA--CTTGGCCCTTAT-ATTGGCCCCCTATC
* ** ** * *** **
3414934 ACTCA-CACCCCCTTAAAGAGCATTTGA---GAT-----------------TTTACAGGTTTGCT
594 CCTCATCA-AACC-TCGAGAAC-TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
3414978 GCCAGTAGCTATTAAAGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
656 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
3415043 CTTCGAG-TTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAG
721 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
** * * * **
3415107 TTTGGGGAAAAAACTCCTTGCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAAT
786 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAAT
3415172 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
851 CA-GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *** ** * ** * * ** *
3415224 AAGGGACCATTGTATGAA--GATGTGCC-T--AAA-CCCACCTATCACCCTATCAAGCCACG--G
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA-TTGGCACAC-A-GAA-ATATGAAG
* * * * * * ** *
3415281 CT-TGCGC--ATCCCATCTCTCTGGCCGA-CGTAGT-GCTCGC-CCGCCCACCCA-CCCGCTCGT
62 ATGTGC-CTAAACCCA---C-CT-ACC-ACCCTA-TCGATC-CACGGCTTACGCATCCCG-TC-T
* ** * * * * *** * *** * * * * * *
3415339 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ATCGGACCG-AGGGT
116 CTC-T-GGCCGGCATA-G-TTGC-CAG--CCCGCCC-GCCCCTGCTC-GTTTC-GTCGGTTGGCT
* * * ** *** ** **
3415402 TGTGGCA-GCAGGA--TCAGTAACA--C-ATAGAGGGGGACTCGGTCTATCCTCGACTTGC-GCA
171 T-AGGCATAC-GGAGTTCATTCCCAGTCTA-AGA-TCAGAC-CGG---AT-CGAGGGTTGCGGCA
* ** ** ** * * * ** * * * * * * **
3415460 ACCTGCCCCTCTG-GC-CGGTTGAGCACCCGCAGGCTCGTTTCATGGGTTGACTTAGGCAT-ATG
227 GCAGGATCGGCAGCACACAGAGGGGGA-CC-C-GGC-CGATCCCTGGCTTG-C----GCATCCCG
**** ** * * ** * * * * * * * * * ** *
3415522 GAGTTCATTCCCAGTCTAAGCATACGGA-GTTCATTCCCAGTCTAAGATCGA-ATCGGACCGAGG
283 CCCCTC-TGGCC-GGCTGAGCACCCGCACGCTCGTT-TC-G--T-GGGTTGACTTAGG-CATACG
* * * * * ** * * ** * *
3415585 GTTGTGACA-GCACA-TGCTAGGC-T-CGGGCATGTGTTGGTGTCGCATTTTTCTTCGCTGGGGC
340 G-AGT-TCATTCCCAGT-CTAAGCATAC-GG-A---GTTCAT-TCCCA---GTCTAAGAT-CGG-
* * * ** * * * * ** * * * **
3415646 ACCATCGTCGGAGCATCGTCG-GAGAACCTG--ACCCAC-GGCATTGGGGTTCCGGTGATCG-GG
391 ACC--GGACCGAGGGTTG-CGACAGCACATGCTAGGCTCGGGCA-T-GTGTT--GGTG-CCGCAT
**** *** ** * ** * * * * * * ***
3415706 GGGGCCAGGGGGGTGTGCTCACAT-G-ATGTGCGATGGGT-GCTAGTACTTGGCC--CTTATATT
448 TTTTCTTCGTCGG-G-GCAC-CATCGCCGGAGC-AT-CGTCG-GAGAACCTGACCGAC-GGCATT
*** * ** ******* * *** * * * * * *
3415766 G-GCCCCCTATCCCTCATCAAACCTCGAGAACTGATACCCCCTTAAAGCACATTTGAGATTTTAC
506 GAGGTTCCGA-CGATCGGGGGGGC-CGGGGGGTG-TGCGCAC---ATG---ATGTGCGA---T--
* ** * * * * * **** * * **
3415830 AGGTTTGCTGCCA-GTAGCCATTA-AATGTCTGAAATGGAGGCACTTTTTTCAAA--T-G-G---
557 -GG-GTGCTGGTACTTGGCCCTTATATTGGC-CCCCT--A-TC-C-CTCATCAAACCTCGAGAAC
**** ** * ** ** ** *
3415886 TCACAAAATCTTGTACA-C-TTTGAG-TTTTAACTGAATTTTTTTGTGCATGCCAACA-AAAATA
614 TCACACCCCCTTAAAGAGCATTTGAGATTTT-AC---A---GGTT-TGC-TGCCAGTAGCCATTA
* ** *** * * * ** *
3415947 CAAGGATCACGTCT-ACCAAGTTTGGGGCCAAAAGTCCATCGAAAAAAT-TTTAAAAAATCCCGG
670 -AA-G-T---GTCTGA--AA---TGGGG--ACACTTTTTTC----AAATGGTCACAAAATCTTGT
*** * * ****** * ** **
3416010 AC-CATAAAAAGTTTTGAAAATCGTGAAAAATGGAAAACGAGTCGTCTTGCCATGAAACTTCACC
718 ACAC-T-TCGAGTTTT---TAGC-TG---AAT---TTTTTTGT-G-CATGCCAACAAAAAT-A-C
* * * * * ** ** * * * * *
3416074 TGAAGGCTTAAAGGACCATTATATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAAAAATA
767 --AAGG-AT-CACGTCTACCA-A-G--TTT-GGGGCC--AAAACT--CCTT--C-CGAAAAAATT
* * ** * * * *** * * *** * * **
3416139 TGAAGATGTGCCTAAACCCACCTACCACCCTATC---GATCCACG--GCTTACG-CATCCCGTC-
816 TTAAAAAAT-CCCAAA--C-CGTA-AAAAGTTTCAAAAAT-CA-GAAAAATA-GAAAACGAGTCG
* * * * * *** *
3416197 TCTCTGGCCGGTG-TAGTGCCCG-CCCGTTCGTT
873 TCT-T-GCC-ATGAAACTTCACGTGAAG-GC-TT
** ** * * ** * * * * *
3416229 TCGTCGGTTGGC-TTAGGTATACGGAGTT-CATTCCCAGTCTAAGATCAG-ACTGG-AC-CGAGG
1 AAG--GG--ACCATT--GTAT--GAATTTACA-AGCCA-T-AAAAAT-GGCATTGGCACAC-AGA
** * * * * * ** ** *** * * * *
3416289 GTTGTGGTAGCAAGATCGGC-AGCATGCAGAATGGGACCCGATCGATCCCCGGCTTGCGCATCCT
53 AATAT-GAAG-ATG-T-GCCTA-AACCCA-CCTACCACCCTATCGATCCACGGCTTACGCATCCC
* * * * * ** * *
3416353 GCCCCGCTGGTCGGC-----TG--AG--CACCCG-TAC-GCTCGTTTCGTGGGTTGACTTAGGCA
112 GTCTCTCTGGCCGGCATAGTTGCCAGCCCGCCCGCCCCTGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * *
3416407 TACGGAGTTCATTCCTAGTCT-A-ACCATA-CGGAGT-TA--ATT-C-CCAGTCTAAGATCGG-A
177 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TCGAGGGTTGCGGCAG-C-AGGATCGGCA
* * * * * * * * * *** * * **
3416463 CCAGACCGAGGGTTG-CAGCAGCAC-AT-GCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCT
239 GCACACAGAGGG-GGAC-CCGGC-CGATCCCT-GGCTTGCGCA-----TCCCGCC-CCTCTGGC-
* * ** ** * * * ** * **
3416525 TCGTC-GAGGCACCATCG-TCG-AAGCATCGTCGG-AG-C--A-CCAT-CGGAGAACCTGACC-G
293 -CGGCTGA-GCACC--CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * * * ** * *
3416580 AC--GGCAT-TGG-GGT--TT--C-G---ATGATTGG-GGGGGCCGGGGGGGTGTGCGCACATG-
354 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC--GAGGGT-TGCG-ACA-GC
** * * * * ** * * ** * * *
3416631 ATGTGCGATGGGTGCTGGTACT-TGGCCCTTATATTGGCCCCATATCCCTCATCAAACTTCAAGA
414 ACATGCTA-GGCT-CGGGCA-TGT-G----T-TGGT-GCCGCAT-T---T-TTC-TTCGTC-GGG
* * * * * * * * * *
3416695 ACTCACACCCCCTTAAAGAGCAT--T-TGAGATTTTACAGGTTTG-CTGCCAGTAGCTATTAAAG
462 GCAC-CATCGCC----GGAGCATCGTCGGAGA----AC----CTGACCGAC-G--GC-ATT-GAG
* * *** ******* * * ** * * * *
3416756 AG-TCTGA-AAT-GGGGACACTTTTTTCAAATG-GTCACAAAATCTTGTACACAT-GAT--TTGT
509 -GTTCCGACGATCGGGGGGGC---CGGGGGGTGTG-CGC-ACATGATGTGC-GATGGGTGCTGGT
* ** ** * ** * * *
3416814 GA-TGGGTGCTGGTACTTGTCCCTTATATTGGCCC-C--CTACCCTC-ATCAAACCTCTAGAACA
567 -ACTTGGCCCTTATA-TTGGCCC-CCTA-T--CCCTCATCAAACCTCGA--GAA-CTC----ACA
* ***** * * * *
3416874 CACACC-CCCTTA--AATAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTC
619 C-CCCCTTAAAGAGCATTTG-A--G---ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * *
3416936 TAAAATGGGGTCACTTTTTTCTAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGC-GAAAT
677 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AAT
* *
3417000 TTTTTTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGTCCAAAACTCCTTC
741 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* *** ** * * **
3417065 CAAAAAAATTTTAAAAAATCTTGAACCCCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAG
806 CGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAG-TTTCAAAAATCAGAAAAATAGAAAACGAG
* *
3417130 TTGTCTTGCCATGAAACTTCACGTTAAGGCTT
870 TCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * *** *
3417162 AAGGGACCATTGTATGAATTTACAAGCTATAAAAATCGCATTGGCATGTAGAAATCTGAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
* * * * **
3417227 GCCTAAACCCATCGACCACCCTATCGATCCACTGCTTGCGCATCCCGTCTCTCTGGCCGGCGCAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCATAG
* * * *
3417292 -TGCCTGCGCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCA
131 TTGCCAGCCCGCCCGC-C-CCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * ** *
3417356 GTCTAAGATCCGACCGGACCGAGGGTTGCGACAGCAGGATCGATAGCACGCAGA---GG----GG
194 GTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGG
* ** * * ** * *
3417414 --GA--CCTAGCTTGTACATCCCGCCCATCTGGCCGACTGAGTGCCCGTACGCTCATTTCGTGGG
259 CCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGG
* * * * *
3417475 TTGACTTAGGCATACAGAGTTCATTCCCGGTTTAAGCATATGGAGTTCATTCCCAGTTTAAGATC
324 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * * * * *
3417540 GGATCGGACTGAGAGATGC-AGCAGTAAATGCTGGGCTTGAGCATGTGCTGGTGCCACATTTTTC
389 GGACCGGACCGAGGGTTGCGA-CAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTC
** ** * * * * * * *
3417604 TTCACCGGGGCACCATCGTTGGAGCATCGCCAGAGAACTTGACCAATGGCGTTGGGGTTCCGACG
453 TTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGAGGTTCCGACG
* * ** *
3417669 ATCGGGGGGGTCAGGGGGGTGTACGCACATGATGTGCGATGAATGCTGGTGCTTGGCCCTTATAT
518 ATCGGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
3417734 TGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTAC
582 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
3417799 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
647 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
3417864 TCTTGTACACTTTGA-TATTTTAGCTGAATTTTTTTATGCATGCCAACAAAAAGACAAGGATCAC
712 TCTTGTACACTTCGAGT-TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * * * *
3417928 GTCTACCAAGATTGGGGCCAAAAATCTTTCCCAAAAAA-TTTAAAAGATCCCAAACCGCAAAAAG
776 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAG
*
3417992 TTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTT
841 TTTCAAAAATCA-GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * *
3418054 AAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGA
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
** * * *
3418119 GATTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCTGGCATAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCATAG
* * * *
3418184 -TGCCCG-CCGCCCG-CCC-GCCCGTTTTGTCGGTTGGCTTGGGCATACGGAGTTCATTCCCAGT
131 TTGCCAGCCCGCCCGCCCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* ** * *
3418245 CTAAGATCAGACCGGA-CTGAGGGTTGTGGCAGCAGGATCAACAGCACGCAGAAGGGGACCCGGC
196 CTAAGATCAGACCGGATC-GAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGC
* * ** *
3418309 CGATCCCCGGCTTGCCCATCCCGCCCCTCTGGCCGG-TAGAGCGTCTGCACGCTCGTTTCGTGGG
260 CGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCT-GAGCACCCGCACGCTCGTTTCGTGGG
*
3418373 TTGAC-T-----T----AG---A----CA---T----AT--GGAGTTCATTCCCAATCTAAGATC
324 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * **
3418412 GGACCGGACCGAGGATTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCGCTTTTCT
389 GGACCGGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCT
* * * * * *
3418477 TCGTCGGGGCACCATCGTCGAAGCATCG-CTGAAGAACCAGACCGACGGCATTGGGGTTCCGATG
454 TCGTCGGGGCACCATCGCCGGAGCATCGTC-GGAGAACCTGACCGACGGCATTGAGGTTCCGACG
*
3418541 ATCGGGGTGGCCGGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
518 ATCGGGGGGGCCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
3418606 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
582 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
3418671 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACAC-TTTTTCAAAAGGTCACAAAA
647 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
3418735 TCTTGTACACTCCGAGTTTGTAGCTGAATTTTTTTGTGCATTCCAACAAAAATACAAGGATCACG
712 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * * * *
3418800 TCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAGGT
777 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGT
* * * *
3418865 TTCAAAGATCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTT
842 TTCAAAAATC-AGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* **
3418926 AAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
* * * *
3418991 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCATAG
* * * * * *
3419056 -TCCCCGCCCGCCCTCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCTCA
131 TTGCCAGCCCGCCC-GCC-CCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * * *
3419120 GTCTAAGATAAGACCAGATCGACGGTTGCTGCAGCAGGATCAGCAGCACGCAGAGGGGGACCTGG
194 GTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGG
* * * *
3419185 CCGATCCCCGGCTTGCGCATCCCACCCCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
259 CCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGG
** *
3419250 TTGACTTAGTTATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATC
324 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * *
3419315 GGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCA-TTTTCT
389 GGACCGGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCT
* * * * * *
3419379 TC-TCCAGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACA
454 TCGT-CGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGAGGTTCCGACG
* ** * *
3419443 ATCGCGGGGGCCGGGGGGGTGTGCTTACATGATGTGTGACGGGTGCTGGTACTTGGCCCTTATAT
518 ATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * * *
3419508 TGGCCCCCTATCCCTCATCAAACCCCGAGAACTCACACCCCCTTACAGAGCATTCGAGATTTTAT
582 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * ** *
3419573 AGGATAGCTGCCAGTAGTTATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAA
647 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
3419638 TCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGCATCACA
712 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * ** *
3419702 TCTACCAAGTTTGGGGCCAGAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCAAAAAAATT
777 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGT
*
3419767 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGACATGAAACTTCACGTGAAGGCTT
842 TTCAAAAATCA-GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
** *
3419828 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
* * * ** * *
3419893 GCCTAAACCCACCTACCACCCTATCAATCCATGGATTGTGCATCCCGTCTCTCTGGTCGGCGTAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCATAG
* * * *
3419958 -TGCCCGCCCGCCCG-CCC-ACTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGT
131 TTGCCAGCCCGCCCGCCCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
** * * **
3420020 CTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGATC
196 CTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGCC
* * * * * * * *
3420085 GATCCCCGGCTTGCACATCCTGCCGCTCTGGCTGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTT
261 GATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
*** * * *
3420150 GACTTAGGCATATACAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCGT
326 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * * * *
3420215 ATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTC
391 ACCGGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTC
* * * *
3420280 G-CTGGGGCACCATCGTCGGAGCATCGTTGGAGAACCTGACCGGCGGCATTGGGGTTCCTG-CGA
456 GTC-GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGAGGTTCC-GACGA
* * *
3420343 TCGGTGGGGCCGGGGGGTGTGTGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTG
519 TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * *
3420408 GCCCCATATCCCTCTTCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAAAG
584 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
3420473 GTTTGCTGCCA-TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
649 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
3420537 TTGTACACTTCGAGTTTTTAGCTGAAATTTTTTT-TGCATGCCAA-ACAAAATACAAGGATCACG
714 TTGTACACTTCGAGTTTTTAGCTG-AATTTTTTTGTGCATGCCAACA-AAAATACAAGGATCACG
* ** *
3420600 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGGAAAAAATTTTCAAAAAT-CCAGAACTATAAAAG
777 TCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAAAAATTTTAAAAAATCCCA-AACCGTAAAAA
* * *
3420664 GTTTCAAAAATCGTGAAAAATAGGAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
840 GTTTCAAAAATC-AGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *** * *
3420727 AAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAGGATGC
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
* * * * * **
3420792 ACTTAAACCCACCTACCACCCTATCGGTGCACGGCTTGCGCATCCTATCTCTCTGGCC--C----
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCATAG
* * * * *
3420851 --GCCCGCCCGCCCG-CCC-ACTCGTTTTGTCGGTTTGCTAAGGCATACGGAGTTCATTCCCAGT
131 TTGCCAGCCCGCCCGCCCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * ** * * ** *
3420912 CTAAGATCAGGCCGGATTGAAGGTTATGGTAGCAGGATCGGTAGCATGCAGAGGGGGACCCGACC
196 CTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGCC
* * * * * * *
3420977 GAT-CCTCGGCATACACATCCCGCCTCTCTGGTCGGCTGAG-AGCCCGTACGCTCATTTCGTGGG
261 GATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA-CCCGCACGCTCGTTTCGTGGG
* *
3421040 TTGACTTAGGCATACCGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
324 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
** * * * * * *
3421105 AGG-CTAGACCGAGGGTTGCAACAGCAGATGCTGGGCTCGAGCATGTGCTGGTGCCCCATTTTTC
389 -GGACCGGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTC
* * * * * * *
3421169 TTCGTTGGGACACCATCGCCGGAGCATCGTTGGAGAACCTGACCCACGACATTGGGGTTCCTACG
453 TTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGAGGTTCCGACG
**
3421234 ATCGATGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
518 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * * * *
3421299 GGCCCCTTATCCCTCGTCAAACCTCAAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTATA
583 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
3421364 GGTTTGTTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
648 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * * *
3421429 CATGTACACTTCTAGTTTGTAGCTGAATTTTTTTATGCATGCCAACAGAAATACAAGGATCACGT
713 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * *
3421494 CTACCAAGTTTGGGG-CAGAAACCCCTTCCAAAAAAATTTCAAAAAAT-GCAGAACCGTAAAAAG
778 CTACCAAGTTTGGGGCCA-AAACTCCTTCCGAAAAAATTTTAAAAAATCCCA-AACCGTAAAAAG
* * * *
3421557 TTTCAAAAATCATGAAATATAGAAAATGAGTCATCTTGCCATCAAACTTCACGTGAAGGCTT
841 TTTCAAAAATCA-GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
*** * *
3421619 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAGATATATCAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
* * * *
3421684 GCCTAAAGCTACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCATA-
* * *
3421749 TGCTTGCCTGCCCGCCCG-CCC-GCTTGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
130 -G-TTGCCAGCCCGCCCGCCCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * *
3421812 AGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCA
193 AGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCA
3421849 CATGCTGGGC
Statistics
Matches: 10215, Mismatches: 1958, Indels: 1451
0.75 0.14 0.11
Matches are distributed among these distances:
859 1 0.00
860 194 0.02
861 97 0.01
862 83 0.01
866 1 0.00
869 3 0.00
870 1 0.00
871 120 0.01
872 483 0.05
873 7 0.00
874 6 0.00
875 11 0.00
876 5 0.00
877 159 0.02
878 11 0.00
879 12 0.00
880 28 0.00
881 14 0.00
882 17 0.00
883 18 0.00
884 13 0.00
885 15 0.00
886 41 0.00
887 582 0.06
888 73 0.01
889 30 0.00
890 11 0.00
891 29 0.00
892 860 0.08
893 647 0.06
894 605 0.06
895 115 0.01
896 28 0.00
897 104 0.01
898 771 0.08
899 403 0.04
900 285 0.03
901 21 0.00
902 499 0.05
903 499 0.05
904 290 0.03
905 466 0.05
906 271 0.03
907 12 0.00
908 5 0.00
909 2 0.00
910 3 0.00
911 108 0.01
912 407 0.04
913 16 0.00
914 8 0.00
915 15 0.00
916 153 0.01
917 334 0.03
918 33 0.00
919 109 0.01
920 49 0.00
921 15 0.00
922 3 0.00
923 9 0.00
924 68 0.01
925 165 0.02
926 16 0.00
927 8 0.00
928 13 0.00
929 4 0.00
930 6 0.00
931 8 0.00
932 57 0.01
933 15 0.00
934 25 0.00
935 22 0.00
936 19 0.00
937 16 0.00
938 11 0.00
939 7 0.00
940 2 0.00
941 5 0.00
943 3 0.00
944 3 0.00
946 1 0.00
947 4 0.00
948 7 0.00
949 1 0.00
950 4 0.00
951 1 0.00
952 1 0.00
953 1 0.00
954 12 0.00
955 7 0.00
956 12 0.00
957 1 0.00
958 5 0.00
959 5 0.00
960 7 0.00
961 8 0.00
962 3 0.00
963 2 0.00
964 2 0.00
965 9 0.00
966 9 0.00
967 19 0.00
968 4 0.00
969 2 0.00
970 19 0.00
971 7 0.00
972 10 0.00
973 13 0.00
974 6 0.00
975 14 0.00
976 6 0.00
977 1 0.00
978 9 0.00
979 11 0.00
980 4 0.00
981 14 0.00
982 14 0.00
983 11 0.00
984 14 0.00
985 6 0.00
986 8 0.00
987 6 0.00
988 8 0.00
989 5 0.00
990 18 0.00
991 14 0.00
992 13 0.00
993 5 0.00
994 7 0.00
995 3 0.00
997 8 0.00
998 10 0.00
999 13 0.00
1000 6 0.00
1001 2 0.00
1002 18 0.00
1003 13 0.00
1004 12 0.00
1005 9 0.00
1006 4 0.00
1007 6 0.00
1008 2 0.00
1009 2 0.00
1010 4 0.00
1012 2 0.00
1014 3 0.00
1016 8 0.00
1017 3 0.00
1018 7 0.00
1019 17 0.00
1020 5 0.00
1021 2 0.00
1022 1 0.00
1023 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCATAG
TTGCCAGCCCGCCCGCCCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
CTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGCC
GATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
ACCGGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTC
GTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGAGGTTCCGACGATC
GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCA
AAAATCAGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
Found at i:3411109 original size:26 final size:26
Alignment explanation
Indices: 3411079--3411131 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3411069 GTTGACTTAG
3411079 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3411105 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3411131 G
1 G
3411132 ATCGAACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3412034 original size:25 final size:26
Alignment explanation
Indices: 3411979--3412050 Score: 119
Period size: 25 Copynumber: 2.8 Consensus size: 26
3411969 TTAGGCACAG
3411979 GGAGTTCATTCCCAGTCTAAGCATAC
1 GGAGTTCATTCCCAGTCTAAGCATAC
*
3412005 AGAGTTCATTCCCAGTC-AAGCATAC
1 GGAGTTCATTCCCAGTCTAAGCATAC
*
3412030 GGAGTTCATTCCCAATCTAAG
1 GGAGTTCATTCCCAGTCTAAG
3412051 TTCAGACCGA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
25 23 0.55
26 19 0.45
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (26 bp):
GGAGTTCATTCCCAGTCTAAGCATAC
Found at i:3412934 original size:26 final size:26
Alignment explanation
Indices: 3412898--3412950 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3412888 GTTGACTTAG
3412898 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
*
3412924 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
3412950 G
1 G
3412951 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:3413828 original size:26 final size:26
Alignment explanation
Indices: 3413792--3413844 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3413782 GTTGACTTAG
3413792 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3413818 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3413844 G
1 G
3413845 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3413961 original size:894 final size:892
Alignment explanation
Indices: 3408052--3421840 Score: 11618
Period size: 898 Copynumber: 15.2 Consensus size: 892
3408042 ACAGGACGCA
* *
3408052 AAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGT
* * * *
3408117 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCTGTCTCTCTGG-CTGCATAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * * * *
3408181 TGCCTGCCCG-CCCGTTCATTTTGTTGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
131 T--C-GCCCGCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * ** * * * *
3408245 TCAGACCAGACTGAGGGTTGCAGTAGCAGGATCGACAGCACACCGAGGGGGACCTGGCCGATCCT
193 TCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGGCCGATCCC
* *
3408310 CGGCTTGCGCATCCTGCCCCTTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGAGTT
258 CGGCTTGCGCATCCTGCCCC-TCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTT
* * * * *
3408375 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGTAGTTCATGCCCAGTCTAAGATCAGATCGG
322 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* * ** * ** * *
3408440 ACCGAGGGGTACGGTAGCACATGCTAGGCTCGGGCATGTGTTGGTACCATATTTTTCTTCGTCGA
387 ACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGG
* * * * * *
3408505 GGCACCATCGTCGGAGCATCGCCGGACAACCTGACCGGCGGCATTAGGGTTCTGGCGATC-GGGG
452 GGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
* *
3408569 GGC-CGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
517 GGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
3408633 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
582 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
3408698 GCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAAGCTTGTACA
647 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * *
3408763 CTTTGAGCTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAAAACAAGGATCATGTCTACCAA
712 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAA
* * **
3408828 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTAAACCGTAAAAAGTTTTGAAAA
776 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC-CAACCATAAAAAGTTTCAAAAA
*
3408893 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
840 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
*
3408946 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGT
* * * *
3409011 GCCTAAACCCACCTACCAGCCTATCGATCTACGGCTTACGCATCCCGTCTCTCTCG-CGGCATAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC---G
* ** *
3409075 TACCTGCCAGCCCGCCCGCCTGCCTGCTCGTTTTATCGGTTGGCTTAGGCATATGGAGTTCATTC
128 ----T---AG-TCGCCCGCC--CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
** * * * ** *
3409140 CCAGTCTAAGATCAGATCGGATGGAGGGTTGCGGTAGAAGGATCGACAGCACGTAAAGGGGGACC
182 CCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACC
* * * *
3409205 CGACC-ATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGTTCGTTTCGT
247 CGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGT
* * * * * * * *
3409269 GGGTTGACTTAGGCATACAGACTTCATTCCCAGTTTAAGTATACAGACTTCATTCCCAATCGAAG
312 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
3409334 ATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGCACTTT
377 ATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTT
** ** ** * *
3409399 TCTTCGTTGTTGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGAGGTTCTGA
442 TCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* * *
3409464 CGATCGGGGGGGCCGGGGGGTGTGCACACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
507 CGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
3409529 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTA
572 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
3409594 CAGGTTTGCTACCAGTAGCCATTAAAGTGCCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAA
637 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
3409658 ATCTTGTACACTTTGAGTTTTTTAGCTGAAGTTTTTTT-TGCATGCCAACAAAAATACAAGGATC
702 ATCTTGTACACTTCGAG-TTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * * * * *
3409722 ATGTCTACCAGGTTTTGAGACAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGTAAAA
765 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC-AACCATAAAA
* *
3409787 AGTTTTAAAAATCGA-GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTT
829 AGTTTCAAAAATC-ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * * * *
3409851 GAGGGACCATTGTATGAGTTTACAAGCCATAAAAATGGCATTCGCACATAGAAATATGAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGT
* *
3409916 GCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * *
3409981 TCCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCGA
131 T---CGCCCG--C-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* ** * * *
3410046 AGATCAGACCGGACTAACGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGCCGAT
190 AGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGGCCGAT
* ** * * *
3410111 CCCCAGCTTGCGCATCCTG-CCCTCTCACCGACTGAGCACCCGCACGCTAGTTTCATGGGTTGAC
255 CCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGAC
* * * *
3410175 TTAGGCATACGGAGTTCATTCCCAGTCTAAGTATACGGAGTTCATTCCCAGTCCAAGATTGGACT
320 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * *
3410240 AGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGAGTTGGTGCCGTATTTTTCTTCGTC
385 AGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCC
* * * *
3410305 GGGGCACCAACG-C----CA------GAGAACCTGACAGACGGCAGTGGGGTTCCGATGATCGGG
450 GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
* *
3410359 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCC
515 GGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
3410424 CTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
580 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
3410489 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
645 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
3410554 CACTTCGAGTTTTTAGGTGAATTTTTTTGTGCATGCTAATAAAAATACAAGGATCACGTCTACCA
710 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * * * * **
3410619 TGTTTGGGGACTAAATTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAA
775 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC-CAACCATAAAAAGTTTCAAAA
3410684 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
839 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
** **
3410738 AATTGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA-AAACTATGAAGATG
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAA-TATGAAGATG
* * *
3410802 TGCCTAAACCCACCTACCACCCTATCGATCGACGGCTTCCGCATCCCGTCTCTCTGGCCAGCGTA
65 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* *
3410867 GTGCCCGCCCGCCCGTCCGCCTACCCGTCTGCTCGTTTCGTGGGTTGGCTTCGGCATACGAAGTT
130 GT---CGCCCG-CC--CCG-CT---CGT-T--TCG--TC---GGTTGGCTTAGGCATACGGAGTT
* * * *
3410932 CATTCCCAGTCTAAGATCAGA-CTGGATCGAGGGTTGTGGCAACAGGATCGGCAGCACGCAGAGG
177 CATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGG
* ** ** * * *
3410996 GGGACCTGGCTAATCGTCGGCTTGCACATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCG
241 GGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCG
*
3411061 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
306 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* **
3411126 TCTAAGATCGAACTGGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCG
371 TCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCG
* * * *
3411191 CATTTTTCTTCGCTGGGGCACCATCATCGGAGCATCGTCAGAGAACCTGA-CTAGCGGCATTGGG
436 CATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGA-CGGCATTGGG
* * * *
3411255 GTTTCGATGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGG
500 GTTCCGACGATCGGGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
3411320 CCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGTATTTG
564 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * *
3411385 AGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTAAAATGGGGACACTTTTTTCAAATG
629 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
3411450 ATCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATGTTTTTGTGCATGCCAACAAAAATACA
694 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * * *
3411515 AGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTCAAAAATCTCGAACC
759 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CCAACC
* * *
3411580 ATAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGATTCGTCTTGCCATGAAACTTCACGTGAA
823 ATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
3411645 GGCTT
888 GGCTT
**
3411650 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAA-ATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGT
* ** * * * *
3411714 GCTTAAACCCACCTACCAGGCTATCGATCTACGGCTTACGTATCCCGTCTCTCTCGCCGGCGTAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * * *
3411779 TGGTCACC-CGCCCGCTCATTTCGTCGATTGGATTAGGCATACGGAGTTCATTCCCAGTCTAAGA
131 TCG-C-CCGC-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * * **
3411843 TCGGACCGGACCGAGTGTTGCGGCAGCAGGATTGGCAGCACACA-AAGGGGACCCGATCGATCCC
193 TCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGGCCGATCCC
* * * *
3411907 CGGCTTGCGCATCCTGCCCCTCTGGCCGGTTGACCGCCCGTACGCTCGTTTCGTGGGTTGACTTA
258 CGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTA
* * *
3411972 GGCACAGGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTC-AAGCATACGGAGTT
323 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G--
* * *
3412036 CATTCCCAATCTAAGTTCAGACCGAACCGAGGGTTGCGACAGCATATGCTGGGCTCGGGCTTGTG
382 --------A-C------C--A--G-ACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTG
* ** * * * * *
3412101 TTGGTGCGGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCATCGGTGAACCTAATCGACG
427 TTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACG
* ** * *
3412166 ACATTATGGTTCCGAC-ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGG
492 GCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
3412230 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAA
557 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
3412295 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGGCATTTTTT
622 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
3412360 TCAAGTGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGACAACAA
687 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * ** * *
3412425 AAATACAAGGATTACGTATACCAAGTTTGGGATCAAAAATCCTTCC-AAAAAATTTTTAAAAATC
752 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
** *
3412489 CCAAACCATAAAAAGTTTTGAAAATCATGAAATATAGAAAACGAGTCGTCTTGCCATGAAACTTC
817 CC-AACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
3412554 ACGTGAAGGCTT
881 ACGTGAAGGCTT
* *
3412566 AAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCATAAAGAAATATGAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGT
* * * *
3412631 GCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGTATCCAGTCTCTCTGGCCGACGTAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * *
3412696 TGCCCGTCCGTCCGCCCACCCGCTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATT-CTAG
131 T---CG--C--CCG--C-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
** *
3412760 TCTAAGAT-AGGATCGGA-CGAAGGGTTGTGGCAGCAGGATCGGTAGCACACAGAGGGGGACCTG
186 TCTAAGATCA-GATCGGACCG-AGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCCG
* * ** * * *
3412823 GCCGATCCCTGGCTTGTGCATCCCACACCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTAG
249 GCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGG
*
3412888 GTTGACTTAGGCATACGGAGTTCAATCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
314 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
3412953 CGGACCAGACCGAGGGTTACGGCAACACATGCTGGGCTCAGGCATGTGTTGGTGCCGCATTTTTC
379 CGGACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTC
** * * * *
3413018 TTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACTTGACCGGCGGCACTGGGGTTCCGGCG
444 TTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* * * *
3413083 ATCGGGGGGGTCGGGGGGGGTGTGCGCACATGATGTGCGATGAGTGCTAGTACTTGGCCCTAAAA
509 ATCGGGGGGG-C-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
3413148 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
572 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * *
3413213 CAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCATAAA
637 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
3413278 ATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTGTGTGCATGGCAACAAAAATACAAGGATCAC
702 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * *
3413343 GTCTACCAAGTTTGGTGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCCCAAGCCGTAAAAAG
767 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAA-CCATAAAAAG
* *
3413408 TTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAACTTCACGTGAAAGCTT
831 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG-AAACTTCACGTGAAGGCTT
* * * * *
3413471 AATGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGTATGCAGAAATATAAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGT
* * * * * * *
3413536 GCCTTAACCCACCTACGACCCTATCGATCCATGACTTACGCATCCCATCTCTCTGACCGGCGTAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* *
3413601 T-GCCCG-CCCGCTCGTTTCGTCGGTTGGCTTAGGTATACGAAGTTCATTCCCAGTCTAAGATCA
131 TCGCCCGCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * * * *
3413664 AATCAGACCAAGGGTTGTGACAACAGGATCGACAGCACGCAAAAGGGGACCCGGCCGATCCCCGG
196 GATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGGCCGATCCCCGG
* * * *
3413729 CTTACGCATCCCT-CCCCTCTGGCCGGTTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGG
261 CTTGCGCAT-CCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGG
3413793 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
325 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* * *
3413858 GAGGGTTGCGACAGCACATGCTAGGCTCAGGCATGTGTTGGTGCCGCATTTTTCTTCACCGAGGC
390 GAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGC
* * * * * *
3413923 -CCTATCGCCGGAGCATCGTCAGAGAACTTGATCGGCGGCATTGAGGTTCCGACGATCGGGGGGG
455 ACC-ATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
* *
3413987 TCGGGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGGCCTTATATTGGCCCCCTA
519 -CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
3414052 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAATAGCATTTGAAATTTTACAGGTTTGCTG
583 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
3414117 CCAGTAGCCATTAAAGTGTCTGAAATGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACAC
648 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
3414182 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACGAAAATACAAGGATCACGTCTACCAAGT
713 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* *
3414247 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCTTAAAAAAGTTTCAAAAAT
778 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CCAACCAT-AAAAAGTTTCAAAAAT
* *
3414312 CCTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTT
841 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
3414364 AA--G------G---G--------A--C----------CA-T----T---G---TATGAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGT
* * * *
3414387 GCCTAAACCCACCTACCACCCTATCAAGCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA-
3414452 TGCTCGCCCGCCCACCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
130 -G-TCGCCCG------C-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * *
3414517 TCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCAGTA-A-CACATAGAGGGGGACTCG
186 TCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATC-G-ACAGCACACAGAGGGGGACCCG
* * * * * *
3414580 GTCTATCCTCGGCTTGCGCAACCTGCCCCTCTGGCCGGTTGAGCACCCGCAGGCTCGTTTCGTGG
249 GCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGG
*
3414645 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCCAAGAT
314 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* ** *
3414710 CGGTCCAGACCGAGGGTTGCGGGAGCACATGCTAGGCTCGGGCATGTGTTGGTGCTGCATTTTTC
379 CGGACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTC
* * *
3414775 TTCACCGGGGCACCATCGTCGGAGCATCGTCGGTGAACCTGATCGGA-GGCATTGGGGTTCCGAC
444 TTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA-CCGACGGCATTGGGGTTCCGAC
* * *
3414839 GATCGGGGGGTCGGGGGGGCGTGCGCACATGATGTGCGATGGGTTCTGGTACTTGGCCCTTATAT
508 GATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
3414904 TGGACCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
573 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
3414969 AGGTTTGCTGCCAGTAGCTATTAAAGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
638 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
*
3415034 TCTTGTACACTTCGAG-TTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACG
703 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
** * * *
3415098 TCTACCAAGTTTGGGGAAAAAACTCCTTGCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGT
768 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC-AACCATAAAAAGT
3415163 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
832 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
3415224 AA--G------G---G--------A--C----------CA-T----T---G---TATGAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGT
* * * * *
3415247 GCCTAAACCCACCTATCACCCTATCAAGCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA-
3415312 TGCTCGCCCGCCCACCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
130 -G-TCGCCCG------C-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* *
3415377 TCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCAGTA-A-CACATAGAGGGGGACTCG
186 TCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATC-G-ACAGCACACAGAGGGGGACCCG
* * * * * * * *
3415440 GTCTATCCTCGACTTGCGCAACCTGCCCCTCTGGCCGGTTGAGCACCCGCAGGCTCGTTTCATGG
249 GCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGG
*
3415505 GTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
314 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
3415570 CGAATCGGACCGAGGGTTGTGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGTCGCATTTTTC
379 CGGACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTC
* * **
3415635 TTCGCTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCCACGGCATTGGGGTTCCGGTG
444 TTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* * *
3415700 ATCGGGGGGGCCAGGGGGGTGTGCTCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATAT
509 ATCGGGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
3415765 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTGATACCCCCTTAAAGCA-CATTTGAGATTTTA
573 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG-AGCATTTGAGATTTTA
3415829 CAGGTTTGCTGCCAGTAGCCATTAAA-TGTCTGAAATGGAGG-CACTTTTTTCAAATGGTCACAA
637 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG-GGACACTTTTTTCAAATGGTCACAA
* *
3415892 AATCTTGTACACTTTGAG-TTTTAACTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
701 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * *
3415956 CGTCTACCAAGTTTGGGGCCAAAAGTCCAT-CGAAAAAATTTTAAAAAATCCCGGACCATAAAAA
766 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC-AACCATAAAAA
** * * *
3416020 GTTTTGAAAATCGTGAAAAATGGAAAACGAGTCGTCTTGCCATGAAACTTCACCTGAAGGCTT
830 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * * * *
3416083 AAAGGACCATTATATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGT
* *
3416148 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGTGTAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* *
3416213 T-GCCCG-CCCGTTCGTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCA
131 TCGCCCGCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * ** ** **
3416276 GA-CTGGACCGAGGGTTGTGGTAGCAAGATCGGCAGCATGCAGAATGGGACCCGATCGATCCCCG
196 GATC-GGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGGCCGATCCCCG
* * *
3416340 GCTTGCGCATCCTGCCCCGCTGGTCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGG
260 GCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * *
3416405 CATACGGAGTTCATTCCTAGTCTAACCATACGGAGTTAATTCCCAGTCTAAGATCGGACCAGACC
325 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* * *
3416470 GAGGGTTGC-AGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGG
390 GAGGGTTGCGA-CAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGG
* * *
3416534 CACCATCGTCGAAGCATCGTCGGAGCACCATCGGAGAACCTGACCGACGGCATTGGGGTTTCGAT
454 CACCATCGTCGGAGCA---TC---G-----TCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
*
3416599 GATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
508 GATCGGGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
3416664 TTGGCCCCATATCCCTCATCAAACTTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
572 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
3416729 CAGGTTTGCTGCCAGTAGCTATTAAAGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
637 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * ** ** * * * ** ** **
3416794 ATCTTGTACACAT-GA-TTTGT-GATG--GGTGCTGGTACTTGTCC--C--TTATA-TTGGCCCC
702 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CCAACAAAAATACAAGG--AT
* * * * * ** * * * ** * *** *
3416849 CTAC-CCTCATCAAACCTCTAGAACACACACCCCCTT-AAATAGAATTTGAGATTTTACAGGTTT
764 C-ACGTCT-A-CCAA-GTTTGGGGC-CAAAACTCCTTCCGA-A-AA----A-ATTTTAAAAAATC
* ** *** ** * *** ** ** * **
3416912 GCTGCCAGTAGCTA--TT-AAAGTGTC-T--AAAATGGGGTCAC-TTTTTTCTAATGATCACAAA
817 CCAACCA-TAAAAAGTTTCAAA-AATCATGAAAAAT-AGAAAACGAGTCGTCT--TG-CCATGAA
* **
3416970 ATCTTGTACACTTCG-AGTTTT
876 A-C-T-T-CACGT-GAAGGCTT
* * * * * * * * * ** **
3416991 TAGCGA-AATT-T-T--TTTGTGCATGCCAACAAAAAT-ACA-AGG-AT-CA-AGTCTACCAAGT
1 AAGGGACCATTGTATGAATT-TACAAGCC-ATAAAAATGGCATTGGCATACAGA-AATATGAAG-
* * * * * ** *** * * ** ***
3417046 TTGGGTCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTTGAACCCCAAAAAGTTTTGAAAAT-
62 ATGTG-CCTAAAC-CC-ACC--TACCACCCT-----ATC--G-A-TCC---ACGGCTTGCGCATC
* ***** * **** * ** ** ** *
3417110 -TGTGAAAAATAGAAAACG-AGTTGTCTTGCCATGAAAC--TTC-AC-GTTAAGGCTTAAGGGAC
110 CCGT-CTCTCTGGCCGGCGTAGTCG-CCCGCCCCG-CTCGTTTCGTCGGTT--GGCTT-A-GG--
* * ** * * * * * * *** * * *
3417169 CAT-TGTA-TGAATTTACAAGCTATAAAAATC-GCATTGG-CATGTAGAAATCT-GAAG-ATG-T
166 CATACGGAGTTCA-TTCCCAG-TCT-AAGATCAG-ATCGGAC-CG-AGGGTTGTGGCAGCAGGAT
* * * ** *** *** * * * * *
3417227 -GCCTA-AACCCA-TCGACCACCCTATCGATCCACTGCTTGCGCATCCCGTCTCTCTGGCCGGCG
225 CGAC-AGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTG-C-CCCT--CTGGC-
* * * * * *
3417289 CAGTGCCTGCGCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCC
284 C-G-G-CT--GAGCAC-C-CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
**** * * *
3417354 CAGTCTAAG-ATCCGACCGGACCGAGGGTTGCGACAG-C-AGGATC-GA-TAGCACGCAGAGGG-
342 CAGTCTAAGCAT---A-CGGA--GTTCATT-C-CCAGTCTAAGATCGGACCAG-AC-C-GAGGGT
** * * * ** * ***
3417413 -G-GACCTAGCTTGTACAT-CCCGCCCATCTGGC-CG-ACTGAGTGCC-CGTACGCTCATTTCG-
396 TGCGA-C-AGC----ACATGCTAG-GC-TCGGGCATGTGTTG-GTGCCGCAT-TTTTC--TTCGC
* * * * * * ** * ** * ***
3417471 TGGGTTG-ACTTAGGCATACAGAGTTCATTC-CCGGTTTAAGCAT-ATGGA-GTTCATTCCCAGT
449 CGGG--GCAC-CA-TCGT-CGGAG--CA-TCGTCGG-AGAA-CCTGACCGACG-GCATT-GGGGT
* * ** * * * * * * * * * * *
3417532 T--TAAGATCGGATCGGACTGAGAGATGCAGCAGTAAATGCTGGGCTTGA-GCATGTGCTGGTGC
502 TCCGACGATCGG-GGGGGCGGGGGGGTG-TGC-GCACATGATGTGC--GATG--GGTGCTGGT--
*** *** * * ** * * * * ***
3417594 CACATT-TTTCTTCA-CCGGGGCACC-ATCGTTGGAGC-ATCGC-CAGAGAACTTGACCAATGGC
558 -AC-TTGGCCCTT-ATATTGGCCCCCTATCCCT-CATCAAAC-CTC-GAGAAC-TCA-C-ACCCC
* *** * ** * *** * ** ** * * * *
3417654 GTTGGGGTTCCGACGATCGGGGGGGTCAGGGGGGTG-TACGCACATGATGTGCGATGAATGCTGG
614 CTTAAAG---AG-C-ATTTGAGATTTTACAGGTTTGCT--GC-CA-G-T-AGCCATTAAAG-T-G
* * ** * ** *** ** *
3417718 TGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAACCCCTTAAAGA
666 T-C-T-G-----AAATGGGGACACT-T---TTTTCAAA---TG-G---TCACAAAATCTTGTACA
* * ** ** * ** * *
3417783 GCATTTGAGATTTTA-C--AGGTTTGCTG-CCAGTAGCC-ATTAAAGTGTCTGAAATGGGGA-CA
712 -C-TTCGAGTTTTTAGCTGAATTTTTTTGTGCA-T-GCCAACAAAAAT-AC---AA---GGATCA
* * ** * * * * * ***
3417842 CTTTTTTCAA--AT-GGTCACAAAATCTTGTACACTT-TGATATTTTAGCTGAATTTTTTTATGC
766 CGTCTACCAAGTTTGGGGC-CAAAA-C---T-C-CTTCCGA-A----A----AA-ATTTTAAAAA
* * ** * ** ** *** *
3417903 ATGCCAA-C--AAAAAG--ACAAGGATCACG---TCTA-CCAA-GA-T--TGGGGCCA-AAAATC
814 ATCCCAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA-C
*** ***
3417954 TTTC-CCAAAAAATTT
878 -TTCACGTGAAGGCTT
** ** * ** * ** ** ** *
3417969 AAAAGATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
1 AAGGGA--CC--ATTGTATGAA-TTT-ACAAGCCAT-AAAAAT-GGCATTG-G-CA---T-ACA-
* * ** *** ** * * * *** *
3418034 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCC-AT--AAAAATGGCATT
51 GAAA--T-A--TGAA-G---ATGTG-CC--TAAACCCACCTACCACCCTATCGATCCACGGC-TT
** *** * ** ** ** * * * * ***
3418096 G-GCA-CATAG-AAATATGAAGATGAGATTAAAC-CCAC-CTACCAC-CCTATCGATC-CACGGC
103 GCGCATC-CCGTCTCTCTG--GCCG-GCGTAGTCGCC-CGC-CCCGCTCGTTTCG-TCGGTTGGC
** ** * * * * * * **
3418154 TT-GCGCAT-C-CCGTCTC-TCTAGCTGGC-ATAG-TGCCCG-CCGCCCGCCCGCCCGTTTTGTC
161 TTAG-GCATACGGAGT-TCAT-TCCCAGTCTA-AGAT--CAGATCG---GACCG--AGGGTTGT-
** * * * ***** * * * *** *
3418212 GGTTGGCTTGGGCATACG-GAGTTCATTCCCAGTCTAAGATCAGACCGGA-CTGAGGGTTGTGGC
214 GG-CAGC--AGG-AT-CGACAG--CA--CACAGAGGGGGACCCGGCC-GATC-CCCGGCT-T-GC
* * * * * * ** * * ** ****
3418275 AGCAGGATCAACAG-CACGCAGAAG-GGGACCCG-GCCGATCCCCGGCTTGCCCATCCCGCCCCT
266 -GC---ATC--CTGCCCCTCTG--GCCGG--CTGAG-C-A--CCC-GCACGCTCGTTTCGTGGGT
* * * * * * *** * *
3418337 CTGGCCGGTAGAGCGT-CTGCACGCTCGTTTCGTGGGTTGACTTAGACATATGGAGTTCATTCCC
316 -T-GAC-TTAG-GCATAC-GGA-GTTC-ATTC-CCAG-T--CTAAG-CATACGGAGTTCATTCCC
* * * * * * *
3418401 AATCTAAGATCGGACCGGACCGAGGATTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGC
369 AGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGC
** * * * *
3418466 CGCGCTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCG-CTGAAGAACCAGACCGACGGCATTG
434 CGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTGACCGACGGCATTG
* * *
3418530 GGGTTCCGATGATCGGGGTGGCCGGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
498 GGGTTCCGACGATCGGGG-GGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
3418595 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
562 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
3418660 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACAC-TTTTTCAAA
627 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * *
3418724 AGGTCACAAAATCTTGTACACTCCGAGTTTGTAGCTGAATTTTTTTGTGCATTCCAACAAAAATA
692 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* *
3418789 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCTCGAA
757 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CCAA
** * * * * *
3418854 CCGCAAAAGGTTTCAAAGATCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTG
821 CCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
3418919 AAGGCTT
886 AAGGCTT
* *
3418926 AAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGT
* *
3418991 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* *
3419056 TCCCCGCCCGCCCTCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCTCAG
131 T---CGCCCG------C-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * * * *
3419121 TCTAAGATAAGACCAGATCGACGGTTGCT-GCAGCAGGATC-AGCAGCACGCAGAGGGGGACCTG
186 TCTAAGATCAGATCGGACCGAGGGTTG-TGGCAGCAGGATCGA-CAGCACACAGAGGGGGACCCG
** * *
3419184 GCCGATCCCCGGCTTGCGCATCCCACCCCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
249 GCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGG
** *
3419249 GTTGACTTAGTTATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGAT
314 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
3419314 CGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCA-TTTTC
379 CGGACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTC
* * * * *
3419378 TTCTCCAGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACA
444 TTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* ** * *
3419443 ATCGCGGGGGCCGGGGGGGTGTGCTTACATGATGTGTGACGGGTGCTGGTACTTGGCCCTTATAT
509 ATCG-GGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * * *
3419508 TGGCCCCCTATCCCTCATCAAACCCCGAGAACTCACACCCCCTTACAGAGCATTCGAGATTTTAT
573 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * ** *
3419573 AGGATAGCTGCCAGTAGTTATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAA
638 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
3419638 TCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGCATCACA
703 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * *
3419702 TCTACCAAGTTTGGGGCCAGAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCAAAAAAATT
768 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC-AACCATAAAAAGT
*
3419767 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGACATGAAACTTCACGTGAAGGCTT
832 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *
3419828 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGT
* * * * *
3419893 GCCTAAACCCACCTACCACCCTATCAATCCATGGATTGTGCATCCCGTCTCTCTGGTCGGCGTAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * *
3419958 TGCCCGCCCGCCCGCCCACTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
131 T---CGCCCG--C-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
** * * * * **
3420023 AGATTGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCGAT
190 AGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGGCCGAT
* * * * * *
3420088 CCCCGGCTTGCACATCCTGCCGCTCTGGCTGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTTGAC
255 CCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGAC
*** * * * *
3420153 TTAGGCATATACAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCGTATC
320 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * * * *
3420218 GGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGCT
385 AGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCC
* *
3420283 GGGGCACCATCGTCGGAGCATCGTTGGAGAACCTGACCGGCGGCATTGGGGTTCCTG-CGATCGG
450 GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCC-GACGATCGG
* * * *
3420347 TGGGGCCGGGGGGTGTGTGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
514 GGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
3420412 CATATCCCTCTTCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTT
579 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
3420477 GCTGCCA-TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
644 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
3420541 ACACTTCGAGTTTTTAGCTGAAATTTTTTT-TGCATGCCAA-ACAAAATACAAGGATCACGTCTA
709 ACACTTCGAGTTTTTAGCTG-AATTTTTTTGTGCATGCCAACA-AAAATACAAGGATCACGTCTA
* * * *
3420604 CCAAGTTTGGGGCCAAAACTCCTTCCGGAAAAAATTTTCAAAAATCCAGAACTATAAAAGGTTTC
772 CCAAGTTTGGGGCCAAAACTCCTTCC-GAAAAAATTTTAAAAAATCC-CAACCATAAAAAGTTTC
* * *
3420669 AAAAATCGTGAAAAATAGGAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
835 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* ** * *
3420727 AAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAGGATGC
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGT
* * * * ** * **
3420792 ACTTAAACCCACCTACCACCCTATCGGTGCACGGCTTGCGCATCCTATCTCTCTGGCCCGC-CCG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * * * *
3420856 CCCGCCCG-CCCACTCGTTTTGTCGGTTTGCTAAGGCATACGGAGTTCATTCCCAGTCTAAGATC
131 -TCGCCCGCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
** ** * * * ** ** * *
3420920 AGGCCGGATTGAAGGTTATGGTAGCAGGATCGGTAGCATGCAGAGGGGGACCCGACCGATCCTCG
195 AGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGGCCGATCCCCG
* * * * * * * *
3420985 GCATACACATCCCGCCTCTCTGGTCGGCTGAG-AGCCCGTACGCTCATTTCGTGGGTTGACTTAG
260 GCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCA-CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
3421049 GCATACCGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGG-CTAGA
324 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCAGA
* * * * * * **
3421113 CCGAGGGTTGCAACAGCAGATGCTGGGCTCGAGCATGTGCTGGTGCCCCATTTTTCTTCGTTGGG
388 CCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGG
* * * * * * **
3421178 ACACCATCGCCGGAGCATCGTTGGAGAACCTGACCCACGACATTGGGGTTCCTACGATCGATGGG
453 GCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* *
3421243 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTA
518 GCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * * *
3421308 TCCCTCGTCAAACCTCAAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTATAGGTTTGTTG
583 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
3421373 CCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACAC
648 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
3421438 TTCTAGTTTGTAGCTGAATTTTTTTATGCATGCCAACAGAAATACAAGGATCACGTCTACCAAGT
713 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * ** *
3421503 TTGGGG-CAGAAACCCCTTCCAAAAAAATTTCAAAAAATGCAGAACCGTAAAAAGTTTCAAAAAT
778 TTGGGGCCA-AAACTCCTTCCGAAAAAATTTTAAAAAAT-CCCAACCATAAAAAGTTTCAAAAAT
* * * *
3421567 CATGAAATATAGAAAATGAGTCATCTTGCCATCAAACTTCACGTGAAGGCTT
841 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
** * *
3421619 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAGATATATCAAGATGT
1 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGT
* *
3421684 GCCTAAAGCTACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
66 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA-
* *
3421749 TGCTTGCCTGCCCGCCCGCCCGCTTGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
130 -G--T--C-GCCCG--C-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
3421814 TCTAAGATCAGA-CTGGACCGAGGGTTG
186 TCTAAGATCAGATC-GGACCGAGGGTTG
3421841 CGACAGCACA
Statistics
Matches: 10557, Mismatches: 1701, Indels: 1265
0.78 0.13 0.09
Matches are distributed among these distances:
851 65 0.01
853 1 0.00
854 2 0.00
855 5 0.00
857 1 0.00
859 93 0.01
860 647 0.06
861 231 0.02
862 194 0.02
863 329 0.03
864 5 0.00
865 1 0.00
870 1 0.00
872 1 0.00
874 1 0.00
878 1 0.00
880 1 0.00
882 1 0.00
885 2 0.00
886 13 0.00
887 462 0.04
888 49 0.00
889 287 0.03
890 2 0.00
891 5 0.00
892 652 0.06
893 473 0.04
894 582 0.06
895 81 0.01
896 16 0.00
897 103 0.01
898 710 0.07
899 397 0.04
900 462 0.04
901 148 0.01
902 489 0.05
903 485 0.05
904 289 0.03
905 471 0.04
906 275 0.03
907 19 0.00
908 17 0.00
909 6 0.00
910 6 0.00
911 104 0.01
912 406 0.04
913 5 0.00
914 10 0.00
915 5 0.00
916 144 0.01
917 328 0.03
918 19 0.00
919 119 0.01
920 35 0.00
921 15 0.00
922 17 0.00
923 11 0.00
924 60 0.01
925 165 0.02
926 6 0.00
927 2 0.00
928 7 0.00
929 11 0.00
930 12 0.00
931 9 0.00
932 56 0.01
933 16 0.00
934 9 0.00
935 8 0.00
936 10 0.00
937 33 0.00
938 23 0.00
939 19 0.00
940 11 0.00
941 21 0.00
942 34 0.00
943 26 0.00
944 20 0.00
945 19 0.00
946 10 0.00
947 8 0.00
948 9 0.00
949 11 0.00
950 6 0.00
951 7 0.00
952 9 0.00
953 20 0.00
954 5 0.00
955 8 0.00
956 12 0.00
957 17 0.00
958 18 0.00
959 11 0.00
960 4 0.00
961 15 0.00
962 13 0.00
963 3 0.00
964 1 0.00
965 1 0.00
968 14 0.00
969 1 0.00
971 1 0.00
972 6 0.00
973 6 0.00
975 2 0.00
976 1 0.00
978 9 0.00
979 13 0.00
980 3 0.00
981 11 0.00
982 6 0.00
983 18 0.00
984 2 0.00
985 8 0.00
986 5 0.00
987 7 0.00
988 23 0.00
989 6 0.00
990 19 0.00
991 22 0.00
992 10 0.00
993 11 0.00
994 21 0.00
995 8 0.00
996 19 0.00
997 8 0.00
998 2 0.00
999 10 0.00
1000 6 0.00
1001 2 0.00
1002 15 0.00
1003 16 0.00
1004 20 0.00
1005 6 0.00
1006 15 0.00
1007 9 0.00
1008 11 0.00
1009 22 0.00
1010 15 0.00
1011 15 0.00
1012 13 0.00
1013 10 0.00
1014 9 0.00
1015 17 0.00
1016 7 0.00
1017 6 0.00
1018 1 0.00
1019 4 0.00
1021 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
TCGCCCGCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
GATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGGCCGATCCCCGG
CTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
AGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCA
CCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCG
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAACCATAAAAAGTTTCAAAAATCATGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
Found at i:3415393 original size:860 final size:865
Alignment explanation
Indices: 3408106--3416804 Score: 9114
Period size: 860 Copynumber: 9.8 Consensus size: 865
3408096 CACACAGAAA
* **
3408106 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCTGTCTCTCT
1 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCT
* * * * * * *
3408171 GGCTG-CATAGTGC-CTGCCCG------CCCGTTCATTTTGTTGATTGGCTTAGGCATACGGAGT
66 GGCCGACGTAGTGCTC-GCCCGCCCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * ** * *
3408228 TCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGTAGCAGGATC-G-ACAGCACACCGA
130 TCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCAGTA-A-CACACAGA
* * * * * *
3408291 GGGGGACCTGGCCGATCCTCGGCTTGCGCATCCTGCCCCTTCTGGCTGGCTGAGCACCCGCACGC
193 GGGGGACCCGGTCGATCCCCGGCTTGCGCAACCTGCCCC-TCTGGCCGGTTGAGCACCCGCACGC
* * *
3408356 TCGTTTCGTGGGTTGAGTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGTAGTTCATGCC
257 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * * * *
3408421 CAGTCTAAGATCAGATCGGACCGAGGGGTACGGTAGCACATGCTAGGCTCGGGCATGTGTTGGTA
322 CAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGTTGGTG
** * * * * * *
3408486 CCATATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGCCGGACAACCTGACCGGCGGCATTA
387 CCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA-CGGAGGCATTG
* * * *
3408551 GGGTTCTGGCGATC-GGGGGG-C-CGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTT
451 GGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
3408613 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
516 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
3408678 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAA
581 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * * *
3408743 TGGTCACAAAAGCTTGTACACTTTGAGCTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAAA
646 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAAT
* * **
3408808 ACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTAA
710 ACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
* ** *
3408873 ACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
775 ACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
3408938 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAG
840 GAAGGCTTAA-GG---A--G--TG-------AA-CC------A---CATT--------G
* * * *
3408997 AAATATGAAGATGTGCCTAAACCCACCTACCAGCCTATCGATCTACGGCTTACGCATCCCGTCTC
1 ---TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTC
* * * * * * **
3409062 TCTCG-CGGCATAGTACCTGCCAGCCCGCCCGCCTGCCTGCTCGTTTTATCGGTTGGCTTAGGCA
63 TCTGGCCGACGTAGT-GCT--C-GCCCGCCC-CC-ACCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* ** * * *
3409126 TATGGAGTTCATTCCCAGTCTAAGATCAGATCGGATGGAGGGTTGCGGTAGAAGGATC-G--ACA
122 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCAGTAACA
* * * * * * *
3409188 GCACGTAAAGGGGGACCC-GACCATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
187 -CAC--AGAGGGGGACCCGGTCGATCCCCGGCTTGCGCAACCTGCCCCTCTGGCCGGTTGAGCAC
* * * * * * *
3409252 CCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACAGACTTCATTCCCAGTTTAAGTATACAGAC
249 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * * * *
3409317 TTCATTCCCAATCGAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGAGCATG
314 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATG
* ** ** ** *
3409382 TGTTGGTGCCGCACTTTTCTTCGTTGTTGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGA
379 TGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACGGA
* * * * *
3409447 CGGCATTGAGGTTCTGACGATCGGGGGGG-CCGGGGGGTGTGCACACGTGATGTGCGATGGGTGC
444 -GGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
3409511 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
508 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
3409576 AAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGCCTGAAAT-GGGACACTT
573 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
3409640 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTTAGCTGAAGTTTTTTT-TGCATGCC
638 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAA-TTTTTTTGTGCATGCC
* * * * *
3409704 AACAAAAATACAAGGATCATGTCTACCAGGTTTTGAG-ACAAAACTCCTTCCGAAAAAATTTAAA
701 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCA-AAAACTCCTTCCGAAAAAATTTTAA
* * *
3409768 AAAATCCCGAACCGTAAAAAGTTTTAAAAATCGA-GAAAAATAGAAAACGAGTCATCTTGCCATG
765 AAAATCCCGAACCATAAAAAGTTTCAAAAATC-ATGAAAAATAGAAAACGAGTCGTCTTGCCATG
3409832 AAACTTCACGTGAAGGCTTGAGGGACCATTGTATGAGTTTACAAGCCATAAAAATGGCATTCGCA
829 AAACTTCACGTGAAGGCTT-----A--A--G---GAG--T----G--------A----A--C-CA
*
3409897 CATAG
861 CATTG
* *
3409902 AAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
1 ---TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTC
* * * * *
3409967 TCTGGCCGACGTAGTCCCCGCCCG--CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGGA
63 TCTGGCCGACGTAGTGCTCGCCCGCCCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * ** * * * * *
3410030 GTTCATTCCCAGTCGAAGATCAGACCGGACTAACGGTTGCGGCAGCAGGATCGGCAGCACACAGA
128 GTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCAGTAACACACAGA
* * * ** **
3410095 GGGGGACCCGGCCGATCCCCAGCTTGCGCATCCTG-CCCTCTCACCGACTGAGCACCCGCACGCT
193 GGGGGACCCGGTCGATCCCCGGCTTGCGCAACCTGCCCCTCTGGCCGGTTGAGCACCCGCACGCT
* * *
3410159 AGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTATACGGAGTTCATTCCC
258 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * *
3410224 AGTCCAAGATTGGACTAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGAGTTGGTGC
323 AGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGTTGGTGC
* * * * *
3410289 CGTATTTTTCTTCGTCGGGGCACCAACG-C----CA------GAGAACCTGACAGACGGCAGTGG
388 CGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACGGA-GGCATTGG
* * *
3410343 GGTTCCGATGATCGGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGAACTTG
452 GGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
3410407 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
517 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
3410472 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
582 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
3410537 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGGTGAATTTTTTTGTGCATGCTAATAAAAATAC
647 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * * *
3410602 AAGGATCACGTCTACCATGTTTGGGG-ACTAAATTCCTTCCAAAAAAATTTTAAAAAATCCTGAA
712 AAGGATCACGTCTACCAAGTTTGGGGCA-AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
**
3410666 CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
776 CCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
*
3410731 AAGGCTTAATTGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
841 AAGGCTTAA--G------G-A-G----T-GAA-CC------A---CATT-----G
* * *
3410786 CAAAACTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGACGGCTTCCGCATCCCGT
1 ------TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCAT
* *
3410851 CTCTCTGGCC-AGCGTAGTGCCCGCCCGCCCGTCCGCCTACCCGTCTGCTCGTTTCGTGGGTTGG
60 CTCTCTGGCCGA-CGTAGTGCTCGCCCG--C--CC-CC-A-CC--C-GCTCGTTTCGTCGGTTGG
* * * *
3410915 CTTCGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA-CTGGATCGAGGGTTGTGGCAACAGGA
114 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTGTGGCAGCAGGA
* * * * * * ** * * * **
3410979 TCGGCAGCACGCAGAGGGGGACCTGG-CTAATCGTCGGCTTGCACATCCCGCCCCTCTGGCCGAC
178 TCAGTAACACACAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCAACCTGCCCCTCTGGCCGGT
*
3411043 TGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
242 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* ** *
3411108 TACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGACAGCACATGCTAGGCTC
307 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTC
* * *
3411173 GGGCATGTGTTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCATCGGAGCATCGTCAGAGAACC
372 GGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC
* * * * * * *
3411238 TGACTAGCGGCATTGGGGTTTCGATGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGTGA
437 TGAC-GGAGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGA
*
3411303 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACACC
501 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
3411368 CCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTAAAATGGG
566 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
3411433 GACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATGTTTTTGTGC
631 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
3411498 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATT
696 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATT
* * * * *
3411563 TTCAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGATTCGTCTTGCC
761 TTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
3411628 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
826 ATGAAACTTCACGTGAAGGCTTAA-GG---A--G--TG-------AA-CC------A---CATT-
3411693 G
865 G
* * ** * * *
3411694 CATGTAGAAATATGAAATGTGCTTAAACCCACCTACCAGGCTATCGATCTACGGCTTACGTATCC
1 --TAT-G--A-A-G--ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * * * *
3411759 CGTCTCTCTCGCCGGCGTAGTGGTCACCCG------CCCGCTCATTTCGTCGATTGGATTAGGCA
57 CATCTCTCTGGCCGACGTAGTGCTCGCCCGCCCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * ** * *
3411818 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGTGTTGCGGCAGCAGGATTGGCAGCA
122 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCAGTAACA
* * * * *
3411883 CACA-AAGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGTTGACCGCCCG
187 CACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCAACCTGCCCCTCTGGCCGGTTGAGCACCCG
* * * *
3411947 TACGCTCGTTTCGTGGGTTGACTTAGGCACAGGGAGTTCATTCCCAGTCTAAGCATACAGAGTTC
252 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
*
3412012 ATTCCCAGTC-AAGCATACGGAGTTCATTCCCAATCTAAGTTCAGACCGAACCGAGGGTTGCGAC
317 ATTCCCAGTCTAAG-AT-C-G-G----------A-C------C--A--G-ACCGAGGGTTGCGGC
* * * * ** *
3412076 AGCATATGCTGGGCTCGGGCTTGTGTTGGTGCGGCATTTTTCTTCGTTGGGGCACCATCGCCGGA
356 AGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGA
* * * * ** *
3412141 GCATCATCGGTGAACCTAATC-GACGACATTATGGTTCCGAC-ATCGGGGGGG-CCGGGGGGTGT
421 GCATCGTCGGAGAACCTGA-CGGA-GGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGT
*
3412203 GCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
484 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
*
3412268 CCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
549 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * * *
3412333 AAAGTGTTTGAAATGGGGGCATTTTTTTCAAGTGGTCACAAAATCTTGTACACTTCGAGTTTTTA
614 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * * *
3412398 CCTGAATTTTTTTGTGCATGACAACAAAAATACAAGGATTACGTATACCAAGTTTGGGATCAAAA
679 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-GCAAAA
* * ** *
3412463 A-TCCTTCC-AAAAAATTTTTAAAAATCCCAAACCATAAAAAGTTTTGAAAATCATGAAATATAG
743 ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAG
*
3412526 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAA
808 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GG--------A-G----T-GAA
3412591 GCCATAAAAATGGCATTGGCATAAAG
858 -CC------A---CA-T----T---G
* *
3412617 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGTAT-CCAGTCT
1 ---TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCA-TCT
* * * *
3412681 CTCTGGCCGACGTAGTGCCCGTCCGTCCGCCCACCCGCTCATTTTGTCGGTTGGCTTAGGCATAC
62 CTCTGGCCGACGTAGTGCTCGCCCG-CC-CCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * *
3412746 GGAGTTCATT-CTAGTCTAAGAT-AGGATCGGA-CGAAGGGTTGTGGCAGCAGGATCGGTAGCAC
125 GGAGTTCATTCCCAGTCTAAGATCA-GATCGGACCG-AGGGTTGTGGCAGCAGGATCAGTAACAC
* * * * * ** * **
3412808 ACAGAGGGGGACCTGGCCGATCCCTGGCTTGTGCATCCCACACCTCTGGCCGACTGAGCACCCGC
188 ACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCAACCTGCCCCTCTGGCCGGTTGAGCACCCGC
* *
3412873 ACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCAATCCCAGTCTAAGCATACGGAGTTCA
253 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * *
3412938 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAACACATGCTGGGCTCAGGCATGTGTT
318 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGTT
** * *
3413003 GGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACTTGACCGGCGGC
383 GGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA-CGGAGGC
* * * *
3413068 ACTGGGGTTCCGGCGATCGGGGGGGTCGGGGGGGGTGTGCGCACATGATGTGCGATGAGTGCTAG
447 ATTGGGGTTCCGACGATCGGGGGGGTC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
3413133 TACTTGGCCCTAAAATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
511 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
3413198 GCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTT
576 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * *
3413263 TCAAATGGTCATAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTGTGTGCATGGCAACAA
641 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* *
3413328 AAATACAAGGATCACGTCTACCAAGTTTGGTGCCAAAAA-TCCTTCCGAAAAAATTTAAAAAAAT
706 AAATACAAGGATCACGTCTACCAAGTTTGG-GGCAAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* *
3413392 CCC-AAGCCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAAC
770 CCCGAA-CCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG-AAAC
*
3413456 TTCACGTGAAAGCTTAATGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGG
833 TTCACGTGAAGGCTTAA-GG---A--G--TG-------AA-CC------A---CATT-G
* * * * *
3413515 TATGCAGAAATATAAAGATGTGCCTTAACCCACCTACGACCCTATCGATCCATGACTTACGCATC
1 TAT---G-------AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
3413580 CCATCTCTCTGACCGGCGTA--G-T-GCCCG------CCCGCTCGTTTCGTCGGTTGGCTTAGGT
56 CCATCTCTCTGGCCGACGTAGTGCTCGCCCGCCCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * *
3413635 ATACGAAGTTCATTCCCAGTCTAAGATCAAATCAGACCAAGGGTTGTGACAACAGGATC-G-ACA
121 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCAGTA-A
* * * * * * *
3413698 GCACGCAAAAGGGGACCCGGCCGATCCCCGGCTTACGCATCCCT-CCCCTCTGGCCGGTTGAGCG
185 -CACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCA-ACCTGCCCCTCTGGCCGGTTGAGCA
*
3413762 CCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
248 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* *
3413827 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCAGGCAT
313 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCAT
* * * * *
3413892 GTGTTGGTGCCGCATTTTTCTTCACCGAGGC-CCTATCGCCGGAGCATCGTCAGAGAACTTGATC
378 GTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACC-ATCGTCGGAGCATCGTCGGAGAACCTGA-C
* * *
3413956 GGCGGCATTGAGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCGCACAAGATGTGCGATGGGT
441 GGAGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
3414021 GCTGGTACTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
506 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
3414086 AAATAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGGCAC
571 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
3414151 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
636 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
3414216 AACGAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
701 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAA
* * * * *
3414281 AAATCTCAAACCTTAAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCATCTTGCCATGA
766 AAATCCCGAACCAT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
3414346 AACTTCACGTGAAGGCTTAA-G-G-G-A-C-CATTG
830 AACTTCACGTGAAGGCTTAAGGAGTGAACCACATTG
* *
3414376 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCAAGCCACGGCTTGCGCATCCCATCTCTCT
1 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCT
3414441 GGCCGACGTAGTGCTCGCCCGCCCACCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
66 GGCCGACGTAGTGCTCGCCCG-CC-CCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* *
3414506 TTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCAGTAACACATAGAG
129 TTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCAGTAACACACAGAG
* * * *
3414571 GGGGACTCGGTCTATCCTCGGCTTGCGCAACCTGCCCCTCTGGCCGGTTGAGCACCCGCAGGCTC
194 GGGGACCCGGTCGATCCCCGGCTTGCGCAACCTGCCCCTCTGGCCGGTTGAGCACCCGCACGCTC
3414636 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
259 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * *
3414701 GTCCAAGATCGGTCCAGACCGAGGGTTGCGGGAGCACATGCTAGGCTCGGGCATGTGTTGGTGCT
324 GTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGTTGGTGCC
* *
3414766 GCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGTGAACCTGATCGGAGGCATTGGG
389 GCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA-CGGAGGCATTGGG
* *
3414831 GTTCCGACGATC-GGGGGGTCGGGGGGGCGTGCGCACATGATGTGCGATGGGTTCTGGTACTTGG
453 GTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
3414895 CCCTTATATTGGACCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
518 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
3414960 AGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGAGTCTGAAATGGGGACACTTTTTTCAAATG
583 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
*
3415025 GTCACAAAATCTTGTACACTTCGAG-TTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACA
648 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * *
3415089 AGGATCACGTCTACCAAGTTTGGGGAAAAAACTCCTTGCAAAAAAATTTTAAAAAATCCCGAACC
713 AGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
*
3415154 ACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
778 ATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
3415219 GGCTTAA-G-G-G-A-C-CATTG
843 GGCTTAAGGAGTGAACCACATTG
* * *
3415236 TATGAAGATGTGCCTAAACCCACCTATCACCCTATCAAGCCACGGCTTGCGCATCCCATCTCTCT
1 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCT
3415301 GGCCGACGTAGTGCTCGCCCGCCCACCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
66 GGCCGACGTAGTGCTCGCCCG-CC-CCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
*
3415366 TTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCAGTAACACATAGAG
129 TTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCAGTAACACACAGAG
* * * * *
3415431 GGGGACTCGGTCTATCCTCGACTTGCGCAACCTGCCCCTCTGGCCGGTTGAGCACCCGCAGGCTC
194 GGGGACCCGGTCGATCCCCGGCTTGCGCAACCTGCCCCTCTGGCCGGTTGAGCACCCGCACGCTC
* *
3415496 GTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
259 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * * *
3415561 GTCTAAGATCGAATCGGACCGAGGGTTGTGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGTC
324 GTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGTTGGTGCC
* **
3415626 GCATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCCACGGCATTGGG
389 GCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACGGA-GGCATTGGG
** * * * *
3415691 GTTCCGGTGATCGGGGGGGCCAGGGGGGTGTGCTCACATGATGTGCGATGGGTGCTAGTACTTGG
453 GTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
3415756 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTGATACCCCCTTAAAGCA-CATTT
518 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG-AGCATTT
3415820 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA-TGTCTGAAATGGAGG-CACTTTTTTCAAA
582 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG-GGACACTTTTTTCAAA
* *
3415883 TGGTCACAAAATCTTGTACACTTTGAG-TTTTAACTGAATTTTTTTGTGCATGCCAACAAAAATA
646 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * *
3415947 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCAT-CGAAAAAATTTTAAAAAATCCCGGA
711 CAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
** * * *
3416011 CCATAAAAAGTTTTGAAAATCGTGAAAAATGGAAAACGAGTCGTCTTGCCATGAAACTTCACCTG
776 CCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
3416076 AAGGCTTAAAGGACCATTATATGAATTTAGAAGCCATAAAAATGGCATTGGCATG
841 AAGGCTT-AAGG--------A-G----T-GAA-CC------A---CA-T----TG
* *
3416131 CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGT
1 ------TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCAT
* *
3416196 CTCTCTGGCCG--GT-GTAG-T-GCCCG------CCCGTTCGTTTCGTCGGTTGGCTTAGGTATA
60 CTCTCTGGCCGACGTAGT-GCTCGCCCGCCCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * *
3416250 CGGAGTTCATTCCCAGTCTAAGATCAGA-CTGGACCGAGGGTTGTGGTAGCAAGATCGGCAGCAT
124 CGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTGTGGCAGCAGGATCAGTAACAC
* ** * * * * * *
3416314 GCAGAATGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCGCTGGTCGGCTGAGCACCCGT
188 ACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCAACCTGCCCCTCTGGCCGGTTGAGCACCCGC
* * *
3416379 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAACCATACGGAGTTAA
253 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* *
3416444 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGTT
318 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGTT
* * *
3416509 GGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGAAGCATCGTCGGAGCACCATCGGAGAACC
383 GGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCA---TC---G-----TCGGAGAACC
* * * * *
3416574 TGACCGACGGCATTGGGGTTTCGATGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
437 TGACGGA-GGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGA
* * *
3416639 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACTTCAAGAACTCACACC
501 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
3416704 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGAGTCTGAAATGGG
566 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
3416769 GACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
631 GACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
3416805 ATGATTTGTG
Statistics
Matches: 6797, Mismatches: 708, Indels: 593
0.84 0.09 0.07
Matches are distributed among these distances:
851 62 0.01
853 1 0.00
854 1 0.00
855 5 0.00
858 1 0.00
859 91 0.01
860 642 0.09
861 241 0.04
862 203 0.03
863 327 0.05
864 4 0.00
865 1 0.00
870 1 0.00
871 2 0.00
872 2 0.00
874 1 0.00
876 2 0.00
877 1 0.00
878 1 0.00
879 3 0.00
880 5 0.00
882 2 0.00
883 2 0.00
884 3 0.00
885 2 0.00
886 9 0.00
887 422 0.06
888 44 0.01
889 289 0.04
890 2 0.00
891 2 0.00
892 9 0.00
893 341 0.05
894 523 0.08
895 93 0.01
896 5 0.00
897 6 0.00
898 264 0.04
899 137 0.02
900 455 0.07
901 131 0.02
902 6 0.00
903 263 0.04
904 269 0.04
905 379 0.06
906 259 0.04
907 10 0.00
908 5 0.00
909 1 0.00
910 1 0.00
911 109 0.02
912 372 0.05
913 5 0.00
915 1 0.00
916 116 0.02
917 318 0.05
918 17 0.00
919 101 0.01
920 5 0.00
921 5 0.00
922 4 0.00
923 5 0.00
924 48 0.01
925 157 0.02
926 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (865 bp):
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCT
GGCCGACGTAGTGCTCGCCCGCCCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCAGTAACACACAGAGGG
GGACCCGGTCGATCCCCGGCTTGCGCAACCTGCCCCTCTGGCCGGTTGAGCACCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
CTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGC
ATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACGGAGGCATTGGGGTT
CCGACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
ATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATA
AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
TTAAGGAGTGAACCACATTG
Found at i:3415545 original size:26 final size:26
Alignment explanation
Indices: 3415515--3415567 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3415505 GTTGACTTAG
*
3415515 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3415541 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3415567 G
1 G
3415568 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3416434 original size:26 final size:26
Alignment explanation
Indices: 3416405--3416455 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
3416395 TTGACTTAGG
* *
3416405 CATACGGAGTTCATTCCTAGTCTAAC
1 CATACGGAGTTAATTCCCAGTCTAAC
3416431 CATACGGAGTTAATTCCCAGTCTAA
1 CATACGGAGTTAATTCCCAGTCTAA
3416456 GATCGGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTAATTCCCAGTCTAAC
Found at i:3416920 original size:176 final size:177
Alignment explanation
Indices: 3416625--3416980 Score: 579
Period size: 176 Copynumber: 2.0 Consensus size: 177
3416615 GGGGTGTGCG
*
3416625 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACTT
1 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCT
* *
3416690 CAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAA
66 CAAGAACACACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAA
* *
3416755 GAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
131 GAGTCTAAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTA
* * * *
3416802 CACATGATTTGTGATGGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTA-CCCTCATCAAACCT
1 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCT
* *
3416866 CTAGAACACACACCCCCTTAAATAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAA
66 CAAGAACACACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAA
* * *
3416931 GTGTCTAAAATGGGGTCACTTTTTTCTAATGATCACAAAATCTTGTA
131 GAGTCTAAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTA
3416978 CAC
1 CAC
3416981 TTCGAGTTTT
Statistics
Matches: 165, Mismatches: 14, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
176 119 0.72
177 46 0.28
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (177 bp):
CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCT
CAAGAACACACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAA
GAGTCTAAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTA
Found at i:3419297 original size:26 final size:26
Alignment explanation
Indices: 3419261--3419311 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3419251 TGACTTAGTT
*
3419261 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAATCTAAGC
3419287 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
3419312 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGC
Found at i:3421085 original size:26 final size:26
Alignment explanation
Indices: 3421049--3421101 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3421039 GTTGACTTAG
*
3421049 GCATACCGAGTTCATTCCTAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
*
3421075 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
3421101 G
1 G
3421102 ATCAGGCTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:3422824 original size:142 final size:142
Alignment explanation
Indices: 3422570--3422833 Score: 325
Period size: 142 Copynumber: 1.9 Consensus size: 142
3422560 TAGGATCTGC
*
3422570 AGCAAGCAGAGGGGGACCCGGCCAATCCCCAGCTTGCGCATCCCACCCCTCTAGCCGGCTGAACA
1 AGCAAGCAGAGGGGGACCCGGCCAATCCCCAGCTTACGCATCCCACCCCTCTAGCCGGCTGAACA
* * * * *
3422635 CCCGTACGCTCATTTCATGGGTTGACTTAGGCATATGAAATTTATTCCTAGTCTAAGCATGTGAT
66 CCCGCACGCTCATTTCATGGGTTCACTTAGGCAGATGAAATTCATTCCCAGTCTAAGCATGTGAT
3422700 AGCAGGATTGGT
131 AGCAGGATTGGT
* * * * * * *
3422712 AGCATGCAGAGGGTGACCCGGCCGATCCCCGGCTTACGCATCCCGCCCCTCT-GACC-GATCGAG
1 AGCAAGCAGAGGGGGACCCGGCCAATCCCCAGCTTACGCATCCCACCCCTCTAG-CCGGCT-GAA
* * ** * *
3422775 CGCCCGCACGTTTGTTTCATGGGTTCACTTAGGCAGATGGAGTTCATTCCCAGTCTAAG
64 CACCCGCACGCTCATTTCATGGGTTCACTTAGGCAGATGAAATTCATTCCCAGTCTAAG
3422834 GAGATGGAGT
Statistics
Matches: 101, Mismatches: 19, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
141 3 0.03
142 98 0.97
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (142 bp):
AGCAAGCAGAGGGGGACCCGGCCAATCCCCAGCTTACGCATCCCACCCCTCTAGCCGGCTGAACA
CCCGCACGCTCATTTCATGGGTTCACTTAGGCAGATGAAATTCATTCCCAGTCTAAGCATGTGAT
AGCAGGATTGGT
Found at i:3422839 original size:26 final size:26
Alignment explanation
Indices: 3422809--3422859 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3422799 TCACTTAGGC
*
3422809 AGATGGAGTTCATTCCCAGTCTAAGG
1 AGATGGAGTTCATTCCCAATCTAAGG
3422835 AGATGGAGTTCATTCCCAATCTAAG
1 AGATGGAGTTCATTCCCAATCTAAG
3422860 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
AGATGGAGTTCATTCCCAATCTAAGG
Found at i:3423740 original size:26 final size:26
Alignment explanation
Indices: 3423704--3423753 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
3423694 GTTGACATAG
*
3423704 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3423730 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
3423754 GAGATCGGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3424580 original size:26 final size:26
Alignment explanation
Indices: 3424544--3424593 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
3424534 GACTTAGGCA
3424544 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGGAGTTCATTCCCAGTCTAAGCT
3424570 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
3424594 ATCGGATCCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:3425923 original size:889 final size:885
Alignment explanation
Indices: 3424096--3426716 Score: 3368
Period size: 889 Copynumber: 2.9 Consensus size: 885
3424086 TGTACTTTTG
* * * *
3424096 GGTCCAAAACTCCTTCCAAAAAAATTTTACAAAATCCTTAACTGCAAAAAGTTTCAAAAATCGTG
1 GGTCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATTGTG
* *
3424161 AAAAATAAAAAATGAGTCGTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATCATATGA
66 AAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGA
* * *
3424226 ATTTACAAGGCATAAAAATGGCATTGACATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
131 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
3424291 ACACTATCGATCCACGGCTTGCGCA-CCCTGTCTCTCTGGCTGGCGTAGTGCCCACCCACCCGCC
196 ACCCTATAGATCCACGGCTTGCGCATCCC-GTCTCTCTGGCCGACGTAGTG------C-CCCG-C
* ** * * * *
3424355 CGCCAGCTCGTTTTCTCGGTTGGCTTATTCA-ATGGAGTTCATTCCCAGTCTAATATTGGACCGG
252 C-CC-GCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGG
** * * * *
3424419 ACCGAATGTTG-CAGCAGCAAGATCGGTAGCATGCA-ATAGGGGACCCGGTCGATCCCTAGCTTG
315 ACCGAGGGTTGTGA-CAGCAGGATCGGTAGCATGCAGA-GGGGGACCCGGTCGATCCC-GGCTTG
* * * * **
3424482 TGCATCCCGCCCCTCTGGCCTGCTAAGCGCCCGCACACTTGTTTCGTGGGTTGACTTAGGCATAC
377 CGCATCCCGCCCCTCTGACCGGCTGAGCGCCCGCACGTTTGTTTC-TGGGTTGACTTAGGCATAC
*
3424547 GGAGTTCATTCCCAGTCTAAGCTTACGGAGTTCATTCCCAGTCTAAGATCGGATCCGACCGAGGG
441 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGACCGAGGG
* * *
3424612 TTGCTGCAGCATATGCTGGGCAT-GGGCATGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCA
505 TTGCGGCAGCACATGCTGGGC-TCGGGCATGTGCTGGTGC-ACATTTTTCTTCCTCGGGGCACCA
* * *
3424676 TCGTCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGAGCCGAG
568 TCGTCGGAGCATC-CCAGAGAACCTGACCGACGACATTAGGGTTCCGATGATC-GGGG-GCC--G
* * * * *
3424741 GGGGGTCTGCACACGTGATGTACAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCC
628 GGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
3424806 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
693 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
3424871 TAGCAATTAAAGTGT-TCGAAATAAGGACA-TTTTTTTCAAATGGTCACAAAATCTTGTACACTT
758 TAGCAA-TAAAGTGTCT-GAAATAGGGACACTTTTTTT-AAATGGTCACAAAATCTTGTACACTT
* * *
3424934 CGAGTTTTTAGCTAAATTTTTTTGTACACGCCAATAAAGATACAAGGATCACACCTACCAAGTTT
820 CGAGTTTTTAGCTAAATTTTTTTGTACACGCCAACAAAAATACAAGGATCACACCTAACAAGTTT
*
3424999 G
885 A
* * ** *
3425000 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTGGAAAATTTTG
1 GGTCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATTGTG
* * * * * *
3425065 AACAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGCACCATTGTATGA
66 AAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGA
* *
3425130 ATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACC
131 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
3425195 ACCCTATAGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CCCG-CCCGCTCGT
196 ACCCTATAGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCGCCCCGCTCGT
* * *
3425258 TTTGTCAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTG
261 TTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTG
* * * * * *
3425323 TGATAGCAGGATTGGTAGCATGCAGAGGGGGACCCGGCCAATCCTCGGCTTACACATCCCGCCCC
326 TGACAGCAGGATCGGTAGCATGCAGAGGGGGACCCGGTCGATCC-CGGCTTGCGCATCCCGCCCC
*
3425388 TCTGACCGG-TCGAGCGCCCGCACGTTTGTTTCATGGGTTCACTTAGGCATACGGAGTTCATTCC
390 TCTGACCGGCT-GAGCGCCCGCACGTTTGTTTC-TGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * *
3425452 CAGTCTAAGCAGACGGAGTTCATTCCCAATCTAAGATTGGACCAGACCAAGGGTTGCGGCAGCAC
453 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTGCGGCAGCAC
* * * *
3425517 ATGCTAGGCTCGGGCATGTGCTGGTGTCATATTTTTCTTCCTTGGGGCACCATCATCGGAGCATC
517 ATGCTGGGCTCGGGCATGTGCTGGTG-CACATTTTTCTTCCTCGGGGCACCATCGTCGGAGCATC
* * *
3425582 ACCGGAGAACCTGACCGACGACATTTGGATTCCGATGATCGGGGGCCGGGGGGTGTGCGCACATG
581 -CCAGAGAACCTGACCGACGACATTAGGGTTCCGATGATCGGGGGCCGGGGGGTGTGCGCACATG
* *
3425647 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
645 ATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
3425712 CTCTCACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCAATAAAGTGTCT
710 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CAATAAAGTGTCT
* *
3425777 GAAAT-GGGCACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTT
774 GAAATAGGG-ACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATT
* * **
3425841 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGGCTAACAAGTTTA
838 TTTTTGTACACGCCAACAAAAATACAAGGATCACACCTAACAAGTTTA
* * *
3425889 GGTCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAGATTTTCAAAAATTGTG
1 GGTCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATTGTG
* * *
3425954 AAAAATAAAAAATGAGTTGTCTTGCCATGGAACTTCACGCGAAGGCTTAAGGGACCATCGTATGA
66 AAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGA
*
3426019 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAGCCACCTACC
131 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
*
3426084 ACCCTATCA-ATCCACGGCTTGCGC-TCCCATCTCTCTGGCCGACGTAGTGCCCGTCCGCCCACC
196 ACCCTAT-AGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CC--CCG--C-CC
* * * * * *
3426147 CGCTTGTTTTGTCGGTTGGCCTAGGCATACGGAGTTCTTTCCCAGTCTATGATCGGA-TCGAACT
254 CGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACC
* * ** * * * * *
3426211 GAGGGTTGTGGCAGTAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGACTGGCGCAT
318 GAGGGTTGTGACAGCAGGATCGGTAGCATGCAGAGGGGGACCCGGTCGAT-CCCGGCTTGCGCAT
* * * *
3426276 CCCACCCCTCT-AGTCGGCTGAGCGCCCGCACGCTCAT-TTTCTGGGTTGACTTAGGCATACAGA
382 CCCGCCCCTCTGA-CCGGCTGAGCGCCCGCACG-T-TTGTTTCTGGGTTGACTTAGGCATACGGA
* * *
3426339 GTTCATTCACAGTCTAAGCATACGGAGTTCATTCCCAGTCTGAGATCGGACCGAACCGAGGGTTA
444 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG-ACCGAGGGTTG
* * *
3426404 CGGGAGCACATACTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCAC-CGGTGCACCATCG
508 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CACATTTTTCTTC-CTCGGGGCACCATCG
* * * * *
3426468 CCAGAGCATCCCAGAGAACCTGATCGACGACACTAGGGTTCCGATGATTGGGGGGGCCGGGGAGG
571 TCGGAGCATCCCAGAGAACCTGACCGACGACATTAGGGTTCCGATGA-T-CGGGGGCCGGGG-GG
* * * *
3426533 TGTGCGCACATGATGTGCAATGGGTGCTAGTACTTGACACTTATATTGGCCCCCCATCCCTCATC
633 TGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
3426598 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCC
698 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-C
* * * * *
3426663 ATTAAAGTGTCTAAAATCGAGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
762 AATAAAGTGTCTGAAATAGGGACACTTTTTTTAAATGGTCACAAAATCTTGTAC
3426717 TTTTGGGTCC
Statistics
Matches: 1501, Mismatches: 182, Indels: 74
0.85 0.10 0.04
Matches are distributed among these distances:
888 26 0.02
889 420 0.28
890 13 0.01
891 3 0.00
892 32 0.02
893 287 0.19
894 5 0.00
895 35 0.02
896 271 0.18
897 20 0.01
898 169 0.11
899 2 0.00
904 215 0.14
905 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (885 bp):
GGTCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATTGTG
AAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATAGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCGCCCCGCTCGT
TTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTG
TGACAGCAGGATCGGTAGCATGCAGAGGGGGACCCGGTCGATCCCGGCTTGCGCATCCCGCCCCT
CTGACCGGCTGAGCGCCCGCACGTTTGTTTCTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGACCGAGGGTTGCGGCAGCACATGC
TGGGCTCGGGCATGTGCTGGTGCACATTTTTCTTCCTCGGGGCACCATCGTCGGAGCATCCCAGA
GAACCTGACCGACGACATTAGGGTTCCGATGATCGGGGGCCGGGGGGTGTGCGCACATGATGTGC
AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATAAAGTGTCTGAAATAG
GGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTA
CACGCCAACAAAAATACAAGGATCACACCTAACAAGTTTA
Found at i:3426366 original size:26 final size:26
Alignment explanation
Indices: 3426330--3426379 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
3426320 GTTGACTTAG
3426330 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
* *
3426356 GCATACGGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATTCACAGTCT
3426380 GAGATCGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:3428068 original size:26 final size:26
Alignment explanation
Indices: 3428039--3428091 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3428029 GTTGACTTAG
3428039 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
3428065 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3428091 G
1 G
3428092 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3429957 original size:183 final size:184
Alignment explanation
Indices: 3429619--3430039 Score: 596
Period size: 183 Copynumber: 2.3 Consensus size: 184
3429609 GTTGGCTTAG
* * * * *
3429619 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCTGTAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGTAGGATCGGCA
* * * * * *
3429684 GCACGTAGAGGGGGACCCGATCGATCCCCAGCTTACGCATCCTGCTCTTCTAACTGGCTGAGCGC
66 GCACGCAGAGGGAGACCCGACCGATCCCCAGCTTACGCATCCTGCCCCTCTAACCGGCTGAGCGC
*
3429749 CCGCACACTCGTCTCATGTGTTGACTTAGGCAAACGGAGTTCATTCCCAGTCTAA
131 CCGCACACTCGTCTCATGGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTC-AA
* * *
3429804 GCATATGGAGTTCA-TACCAGTCTAAGATCAGATCAGACCGAGGGTTACGGCAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGTAGGATCGGCA
* **
3429868 GCACGCAGAGGGAGACCC-ACCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
66 GCACGCAGAGGGAGACCCGACCGATCCCCAGCTTACGCATCCTGCCCCTCTAACCGGCTGAGCGC
* * *
3429932 CCGCACGCTCGT-TCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCAA
131 CCGCACACTCGTCT-CATGGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTCAA
**
3429986 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGGCAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAG
3430040 CACATACTGG
Statistics
Matches: 208, Mismatches: 26, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
182 16 0.08
183 120 0.58
184 60 0.29
185 12 0.06
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGTAGGATCGGCA
GCACGCAGAGGGAGACCCGACCGATCCCCAGCTTACGCATCCTGCCCCTCTAACCGGCTGAGCGC
CCGCACACTCGTCTCATGGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTCAA
Found at i:3429989 original size:25 final size:25
Alignment explanation
Indices: 3429961--3430008 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
3429951 GTTGACTTAG
3429961 GCATACGGAGTTCATTCCCAGTCAA
1 GCATACGGAGTTCATTCCCAGTCAA
3429986 GCATACGGAGTTCATTCCCAGTC
1 GCATACGGAGTTCATTCCCAGTC
3430009 TAAGATTGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCAGTCAA
Found at i:3430919 original size:26 final size:26
Alignment explanation
Indices: 3430867--3430920 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
3430857 GTGGACTTAG
**
3430867 GCATATGAAGTTCATTCCCAGTTTAA
1 GCATATGAAGTTCATTCCCAGGCTAA
*
3430893 GCATATGGAGTTCATTCCCAGGCTAA
1 GCATATGAAGTTCATTCCCAGGCTAA
3430919 GC
1 GC
3430921 TCGGACCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAGGCTAA
Found at i:3432659 original size:26 final size:26
Alignment explanation
Indices: 3432630--3432682 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3432620 GTTGACTTAG
3432630 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3432656 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3432682 G
1 G
3432683 ATCAGGCCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3435272 original size:878 final size:876
Alignment explanation
Indices: 3429986--3436979 Score: 8010
Period size: 889 Copynumber: 7.9 Consensus size: 876
3429976 TCCCAGTCAA
* * *
3429986 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACC-AGACCGAGGGTTACGGCAGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * *
3430050 GCTCGGGCATGTGCTGGTGCCGCCTTTTTCTTTAC-CGAGGCAGCATCACCGGAGCATCATCGGA
66 GCTCGGGCATGTGCTGGTGCCTCATTTTTC-TT-CGCGGGGCACCATCGCCGGAGCATCACCGGA
*** * ** *
3430114 GAACCTGACCGACAAAATTAGGGTTTTGACGATCGGGGGGTCCGGGTGGGTGTGCGCACATGATG
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGGTGTGCGCACATGATG
* *
3430179 TGCGATGGGTGCTGGTACTTGACCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
3430244 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTAAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
3430309 ATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTT
* * ** * * * **
3430374 TT-TGAATGCCAATAAAAATACAAGGATCGTGTCTACCAAGTTTTGGGCTAAAAATCCTTTTGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * * * *
3430438 AAAATTTAAAAAAATCCTGAGCCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAATGAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
3430503 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
3430568 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * *
3430633 ACGCATCCTGTCTCTCTGGCC-GACGTATTGCCCGCCCGCCCACCTGCTCGTCCGCTCGTTTCCT
647 GCGCATCCCGTCTCTCTGGCCTG-CGTA--G--TGCCCGCCCACCCGCCCGCCCGCTCGTTTCAT
* * * * *
3430697 CGGTTGGCTTAGGCATACGGAGTTCATTCCGAGTCTAAGATTAGGCCAGACTGAGGGTTGCGGTA
707 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACGGACTGAGGGTTGCGGCA
* * * ** * * *
3430762 GCAGGATCGGCAGTACACAGAGGTGGACCCGACCGATCCTCGGC-TGCGTATCCCGCCCCTCTTG
771 GCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* ** * *
3430826 CCGACTGAGCATCCGCACGCTCGTTTCGTGGGTGGACTTAG
836 CCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAG
* *
3430867 GCATATGAAGTTCATTCCCAGTTTAAGCATATGGAGTTCATTCCCAGGCTAAGCTCGGACCGGAC
1 GCATACGGAGTTCATTCCCAG--T---C-TA---AG---A-T--C-GG---A-C-C-GA---GAC
* * * * * ** *
3430932 CGAGGGTTGTGACAGCACATGCTAGGCTCGAGCATGTGCTAGTGCGACATTTTTCTTCCCCGGGG
41 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTT-CGCGGGG
* * * * * * * * *
3430997 CACCATCGTCGAAGCATCGCCGGAGAACCTGATCGGCGGCATTAGGCTTCCGATGAT-TGGGGGG
105 CACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
* *
3431061 TCGGGGGGTGTGCGCACATGATGTGCGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTAT
170 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
3431126 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTACTGC
235 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
3431191 CAGTAGGCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCT
300 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
3431256 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAGGTT
365 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * *
3431321 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATTCGGAACCGTAAAAAGTTTTAAAAATCG
430 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCG
* * * * *
3431386 TGAAAAATAGAAAATGAGTCATCCTGCAATGAAACTTCACGTGAAGGCTTAATGGACCATTGTAT
495 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * *
3431451 GAATTTACAAGCCATAAAAATGGCATTGGCACAGAGAAATATGAAGATGTGCGTAAAGCCACTTA
560 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
3431516 CCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCAGTGTACTG-TCG----CCCGC
625 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCTGCGTAGTGCCCGCCCACCCGC
* * * * * *
3431576 CCGTCAGCTCGTTTCATCGGTTGGCCTAGGCATACGGTGTTCATTCCCATTCTAAGATCGGATCG
690 CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CG
* ** * * * * * *
3431641 AACCAAGGGTTGAGGTAGCAGAATTGGCAACACGCAGAGGGGGACCCGGTCGATCCCTGGCTTGC
754 GACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGC
* * *
3431706 GCATCCCGCCCCTCTGGCGGGCTGAGCGCCCACACGCTCATTTTGTGGGTTGACTTAG
819 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAG
* * * *
3431764 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AGGCCGAGGGTTGCGACAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGACCGAGGGTTGCGGCAGCACATGCTGG
*
3431828 GCTCGGGCATGTGCTGGTGACGT-ATTTTTCTTCGCCGGGG---CA----C----CATCACCGGA
66 GCTCGGGCATGTGCTGGTG-CCTCATTTTTCTTCG-CGGGGCACCATCGCCGGAGCATCACCGGA
* * *
3431881 GAACCTGACCAACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGA
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
*
3431946 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
3432011 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
3432076 TGGGGACA-ATTTTTCTAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTT
324 TGGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
3432140 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* ** * * *
3432205 AAATTTTAAAAAATCTCGGGCCGCAAAGAGTTTCT-AAAATCGTGAAAAATAAAAAACGAGTCGT
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTT-TAAAAATCGTGAAAAATAGAAAACGAGTCGT
3432269 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * ** * * *
3432334 GAATTGGCACGCACAAATATGAAGATAAGCCTAAACCCACCTACCACCCTATCGATCGATGGTTT
582 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * ** * *
3432399 GCGTATCCCGTCTCTCTGGCCGGCTTACTGCCCGCCCACCCGCTTGCCCGCTCATTTCATCGATT
647 GCGCATCCCGTCTCTCTGGCCTGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCATCGGTT
* ** *
3432464 GGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGCGGCAGCAAG
712 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGACTGAGGGTTGCGGCAGCAGG
* * * * *
3432529 ATTGGCAGCACGCAGAGGGGGTCCGGGTCGATCCCCGGCTTGCGAATCCCGCCCCTCTGGCCGGT
776 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* *
3432594 TGAGTGCCCGA-ACGCTCGTTCCGTGGGTTGACTTAG
841 TGAGCGCCC-ACACGCTCGTTTCGTGGGTTGACTTAG
3432630 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTGATTCCCAGTCTAAGATCAGGCCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C---G--G------A--C------C--G--AGAC
*
3432695 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA-GCTGCTGGTGCCGT-ATTTTT-TTCACAGG
41 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG-TGCTGGTGCC-TCATTTTTCTTCGC-GG
** * *
3432757 GGCACCATCGGTGGAGCATCACCGGAGAACCTGACC-AGCGGCATTGGGGTTCTGGCGATCGAGG
103 GGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCG-GG
* *
3432821 GGGCCACGGGGGGTGTGCGCACATGATGTGCGATGGGTACTGG-ACCTTGGCCCTTATATTGGCC
166 GGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA-CTTGGCCCTTATATTGGCC
*
3432885 CCCTATCCCTCATCATACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
229 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
3432950 TGCTGCCAGTAGCCATTAAAGTGTTTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTG
294 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * *
3433015 TACACTTCAAGTTTTTAGGTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTAC
359 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * ** *
3433080 CAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTT-AAAAATCTTGAACCATAAAAAGTTTTAA
424 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAA
* * * * * * * *
3433144 AAATCTTGAAAAATAGAAAACCAATCGTCTTGCCGTGAAACTTCGCGTGAAGGCATAAGAGACAA
489 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
** * ** * *
3433209 TTGTATGAATTTACAAAACATAAAAATGGCGTTGGCACGTAGATATATGAAGATGTGCCTAAACT
554 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACC
** * *
3433274 CACCTACCACCCTATCGATCCACGGCTTGTTCATCCCATCTCTCTGGCCGGCGTAGT----G---
619 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCTGCGTAGTGCCCGCCC
* *
3433332 -CCCGCCCGCCCGCTCGTTTC-GCGGTTGGCGCTTAGGGCATAAGGAGTTCATTTCCCAGTCTAA
684 ACCCGCCCGCCCGCTCGTTTCATCGGTT-G-GCTTA-GGCATACGGAGTTCA-TTCCCAGTCTAA
* * * *
3433395 GATCAGGACCGACTGAGGGGTGATCGTGCA--AAGA-CGGGCAGCACGCACGA--GGGACCCGAT
745 GATCA-GACGGACTGAGGGTTG--CG-GCAGCAGGATC-GGCAGCACGCA-GAGGGGGACCCGGT
* * * **** * *
3433455 -GATCCCCGGCTTGTGCATCCCACCCGTCTGGCAAAATTGAGCGCCCGCATGCTCGTTTCCGTGG
804 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC-CGGCTGAGCGCCCACACGCTCGTTT-CGTGG
*
3433519 GCTTGAGTTTAGG
867 G-TTGA-CTTA-G
* *
3433532 GCATACGGAAG-TCATTTCCAGTCTAAAGCATGGGAGTTATTCCGGGCTAAGATTGGAACCTGGA
1 GCATACGG-AGTTCATTCCCAGTCT-AAG-AT-CG-G--A---C---C---GA---G-ACC--G-
* * * *
3433596 CCAAGGGTCTTGTGGCAGCACATGCAGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTC-G
43 ---AGGG--TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGCGG
* * * *
3433660 GGCACCATCGCCAGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTTCGATGATCGGGGG
103 GGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
* * * *
3433725 GTG-CAGGGGGTGTGTGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCC
168 G-GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
3433789 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
232 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
3433854 TGCCACTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTAC
297 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
3433919 GCTTCGAGTTTTTAGCT-AAATTTTTTGTGCATGCCAACAAAAAAACAAGGATCACATCTACCAA
362 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
** * * *
3433983 GTTTGGGGATAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGGTTTGAAAA
427 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAA
* * * *
3434048 TCGTGAAAAATAGAAAACGAGTCGTCTTCCCGTGAAACTTCGCGTGAAGGCTT-AGGAGACAATT
492 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG-GACCATT
* *
3434112 GTATGAATTTTCAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTGAAA-CC
556 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCT-AAACCC
* * *
3434176 AACTACCACCCTATCCATCCACGGCTTGCGCATCCCGTCTCTCTGG-CTGGCGTAGTGCCCGCCG
620 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCT-GCGTAGTGCCCGCCC
* * * * *
3434240 GCCCGCCCACCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC
684 ACCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
** * *
3434305 AGATCGGA-TCGAGGGTTATGGCAGCAGGATCGGTAGCACGTAGAGGGGGACCCGGTCGATCCCC
749 AGA-CGGACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCC
* ** * * * *
3434369 AGCAAGTGCATCCCGCCCCTCTGGCCGGCGGAGCGGCTACACGCTCGTTTCGTGGGTTGACTTAG
812 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAG
*
3434434 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCACTTGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGACCGAGGGTTGCGGCAGCACATGCTGG
** * * ** * * *
3434498 GCTCAAGCATGTGTTGGTGCCTCATTTTTCTTCGTTGGGGTGCCATCGTCGGAGCATCGCCAGAG
66 GCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCG-CGGGGCACCATCGCCGGAGCATCACCGGAG
* * *
3434563 AACCTGATCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATG
*
3434628 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
**
3434693 ACACCCCCTTAAAGAGCATTTGAGA-TTTACAGGTTTGGAGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
3434757 ATGGGGACACTTCTTTCACATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* ** * **
3434822 TGGGCATGCCAACAAAAATACAAGGATCACGTCTATTAAGTTTGGGGCCAAAACCCCTTTTGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
3434887 AAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
3434952 TTGCCATGAAACTTCACGTGAAGGCATAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
3435017 CATTGGCGCTCTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
583 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
3435082 CGCATCCCGTCTCTCTAGCCTGCGTGGTGCCCGCCCATCTGCCCGCCCACTCGTTTCATCGGTCG
648 CGCATCCCGTCTCTCTGGCCTGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCATCGGTTG
* * * * *
3435147 GCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAATCGGACTGAGGATTGCGACAACAGGA
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACTGAGGGTTGCGGCAGCAGGA
* * * *
3435212 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCAGCTTGTGCATCTCGCCCCTCTGGCCGGCT
777 TCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
3435277 GGGCGCCTACACGCTCGCTTCGTGGGTTGACTTAG
842 GAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAG
*
3435312 GCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-CG--G---------A--C------C-GA---GAC
* * ** *
3435377 CGAGGGTTACGGCAGGACATG-T--TTTCGGGCATGTGCTGGTG-CTGTATTTTTCTTCGTC-GG
41 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCT-CATTTTTCTTCG-CGGG
* ** * *** * *
3435437 GCACCATCGCTGGAGCATCGTCAGAGAACCTGATTAACGACA-TGGGGTTTCGACGATC------
104 GCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* *
3435495 G--GGGGGGTGTGCGCATATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTA
169 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
3435558 TCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGTGCATTTGAGATTTTACAAGTTTGGTG
234 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
3435622 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTTCAAATAGTCACAAAATCTTGTACAC
299 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* **
3435687 TTCGAGTTTTTAGCTGAATTTTTTTGGGCATGCCAACAAAAATACAAGGATCACGTCTATTAAGT
364 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * *
3435752 TTGGGGCTAAAACCCCTTCTGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTAAAAATC
429 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATC
*
3435817 GTGAAAAATAGAAAACGAGTCGACTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
494 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * ** *
3435882 TGAATTTACAAGACATAAAAATGGCAATGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCT
559 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * * * *
3435947 ACCACCCTATCGGTCCACAGCTTGGGCATCCCATCTCTCTGACC-GACGTAGTGCCCGCCCGCCT
624 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCTG-CGTAGTGCCCGCCCACCC
* * *
3436011 GCCCGCCCAG-TCGGTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAA
688 GCCCGCCC-GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
** * * * * *
3436075 CTGGACCAAAGGTTACAGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGTCGATCCCTGGCT
752 C-GGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCT
* * *
3436140 TGCGCATCCCGCCCCTCTTTGGTCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
816 TGCGCATCCCGCCCCTC--TGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAG
* * * *
3436203 GCAAACGGAGTTCATTCCCAGTCTAAGATCAGACCG-GACAGAGGGTTGCGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGACCGAGGGTTGCGGCAGCACATGCTGG
* **
3436267 GCTCGGGCATGTGCT-GCGCCGT-ATTTTTCTTCGTCGGGGCACCATCGCCAGG-GCATCGTCGG
66 GCTCGGGCATGTGCTGGTGCC-TCATTTTTCTTCG-CGGGGCACCATCGCC-GGAGCATCACCGG
* * * * * *
3436329 AGAACCTGACCGACGGCATTGGGGTTCTGATGATTGGGGGGGGGCCAGGGGAGTGTGCACACAAG
128 AGAACCTGACCGACGGCATTGGGGTTCCGACGA-T-CGGGGGGGCC-GGGGGGTGTGCGCACATG
* * *
3436394 ATGTGCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCTTATCCCTTATCAAACCTCGAGAA
190 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
3436459 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
255 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * *
3436524 GAAATGGGGACACTTTTTTCAAATGCTCATAAAATCTTGTACACTTCGACTTTTTAGCCGAATTT
320 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
3436589 TTTTGTGCATGCCACCAAAAATACTAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG
385 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * * *
3436654 AAAAAATTTTTAAAAAATCCCAAACGGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
450 AAAAAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGT
* * *
3436719 CCTCTTGCCATGAAACTTCACGTGAAGGCTTAAGCGACCATTGTATGGATTTACAAGCCATAAAA
514 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * * * *
3436784 ATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCGACCACCCTGTCGATCAATGA
579 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
3436849 CTTGCGCATCCCGTCTCTCTGG-CTGGCGTAGCGCCCGCCCGCCCGCCCGACTGCTCGTTTCGTC
644 CTTGCGCATCCCGTCTCTCTGGCCT-GCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCATC
* * * * *
3436913 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTCAGATCGGACCAGACCGAGGGTTGTGGCAG
708 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACTGAGGGTTGCGGCAG
3436978 CA
772 CA
3436980 CATTCCGGGC
Statistics
Matches: 5246, Mismatches: 650, Indels: 433
0.83 0.10 0.07
Matches are distributed among these distances:
860 41 0.01
861 459 0.09
862 3 0.00
864 1 0.00
865 22 0.00
866 188 0.04
867 18 0.00
868 52 0.01
869 15 0.00
870 3 0.00
871 57 0.01
872 2 0.00
873 1 0.00
874 46 0.01
875 1 0.00
876 62 0.01
877 92 0.02
878 563 0.11
879 9 0.00
880 84 0.02
881 199 0.04
882 274 0.05
883 3 0.00
884 1 0.00
885 1 0.00
886 1 0.00
887 6 0.00
888 24 0.00
889 581 0.11
890 6 0.00
891 75 0.01
892 52 0.01
893 6 0.00
894 9 0.00
895 22 0.00
896 113 0.02
897 113 0.02
898 52 0.01
899 43 0.01
900 126 0.02
901 415 0.08
902 97 0.02
903 253 0.05
904 346 0.07
905 481 0.09
906 64 0.01
907 135 0.03
908 5 0.00
909 20 0.00
910 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (876 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGACCGAGGGTTGCGGCAGCACATGCTGG
GCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGCGGGGCACCATCGCCGGAGCATCACCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCTGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCATCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGACTGAGGGTTGCGGCAGCAGGATCGG
CAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCCACACGCTCGTTTCGTGGGTTGACTTAG
Found at i:3435349 original size:26 final size:26
Alignment explanation
Indices: 3435312--3435364 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
3435302 GTTGACTTAG
3435312 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3435338 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
3435364 G
1 G
3435365 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3438409 original size:720 final size:719
Alignment explanation
Indices: 3436171--3438409 Score: 3344
Period size: 720 Copynumber: 3.1 Consensus size: 719
3436161 GTCGGCTGAA
* * * * *
3436171 CGCCCG-CACGCTCGTTTCGTGGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATCAG
1 CGCCCGAC-CGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAG
* * * * * *
3436235 ACCGGACAGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCT-GCGCCGTATTTTTCTTC
65 ACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * *
3436299 GTCGGGGCACCATCGCCAGG-GCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCTGATGAT
130 GTCGGGGCACCATCGTC-GGAGCATCGTCGGAGAACCTGACCGATGGCATTGGGGTTCTGACGA-
* * * * * *
3436363 TGGGGGGGGGCCAGGGGAGTGTGCACACAAGATGTGCGATGGGTGCTGGTAGTTGGCCCTTATAT
193 T-CGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATAT
* * * *
3436428 TGGCCCCTTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
257 TGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTAC
* *
3436493 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCATAAAA
322 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * *
3436558 TCTTGTACACTTCGACTTTTTAGCCGAATTTTTTTGTGCATGCCACCAAAAATACTAGGATCACG
387 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
*
3436623 TCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTTAAAAAATCCCA-AACGGCAAAAA
452 TCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA-TTTTAAAAAAT-CCAGAACCGCAAAAA
*
3436687 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTGAAGGCTTAA
515 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * ** *
3436752 GCGACCATTGTATGGATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGC
580 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
* * * * * * * *
3436817 CTAAACCCACCGACCACCCTGTCGATCAATGACTTGCGCATCCCGTCTCTCTGGCTGGCGTAGCG
645 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
3436882 CCCGCCCGCC
710 CCCGCCCGCC
* * * * *
3436892 CGCCCGACTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTCAGATCGGA
1 CGCCCGACCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
* * * *
3436957 CCAGACCGAGGGTTGTGGCAGCACATTCCGGGCTCAGGCATGTGCTGGTGCCTCATTTTTCTTCG
66 CCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
*
3437022 TCGGGGCACCATTGTCGGAGCATCGTCGGAGAACCTGACCGATGGCATTGGGGTTCTGACGATCG
131 TCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGATGGCATTGGGGTTCTGACGATCG
* *
3437087 GGGGGGCCA-GGGGGTGTGCGCACATGATGGGCAATGAGTGCTGGTACTTGGCCCTTATATTGGC
196 GGGGGGCCAGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
3437151 CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTT-AGATTTTACAGG
261 CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGC-TTTTGAGATTTTACAGG
** * *
3437215 TTTGCTGATAGTAGCCATTAAAGTGTCTGAAATGGGGACAGTTTTTACAAATGGTCACAAAATCT
325 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
*
3437280 TGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
390 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * * * *
3437345 ACCATGGTTGGGGCCAAAACTCCTTTCAAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTC
455 ACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTC
* *
3437410 AAAAATCATGAAAAATA-AAACACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
520 AAAAATCATGAAAAATAGAAA-ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
3437474 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
584 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* *
3437539 ACCCACCTACCACCCTATCGATCCACGGCTTACACATCCCGTCTCTCTGGCCGACGTAGTGCCCG
649 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG
*
3437604 CCCGAC
714 CCCGCC
* *
3437610 CGCCCGTCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGA
1 CGCCCGACCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
* * *
3437675 CCGGACCAAGGGTTGTGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCG
66 CCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* * * *
3437740 TCGAGGCACCATCATCGGAGCATCGTCGGAGAACCTAACC-AGTGGCATTGGGGTTTTGACGATC
131 TCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGA-TGGCATTGGGGTTCTGACGATC
3437804 GGGGGGGCCAGGGGGGCTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTG
195 GGGGGGGCCAGGGGGG-TGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTG
*
3437869 GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTATAG
259 GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAG
*
3437934 GTTTGCTGCCAGTCGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
324 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
3437999 TTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTC
389 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * *
3438064 TACCACGTTTGGGGCAAAAAATTCTTCCGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTT
454 TACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTT
** *
3438129 TGAAAATCATGAAAAATAGAAAACGAGTCATCGTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
519 CAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
** * *
3438194 CCATTGTATGAATTTACAAGCCATAAAAATTTCATTGGCATGTAGAAATATGACGATGTGCCTAA
584 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
*
3438259 ACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCG-CTTCTCTGGCCGACGTAGTGCCC
649 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC-TCTCTGGCCGACGTAGTGCCC
*
3438323 GTCCGCC
713 GCCCGCC
* * * * *
3438330 CACCTGCCCGCTCCTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
1 CGCCCGACCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
*
3438395 CCAGACTGAGGGTTG
66 CCAGACCGAGGGTTG
3438410 CGACAGCAGG
Statistics
Matches: 1373, Mismatches: 133, Indels: 25
0.90 0.09 0.02
Matches are distributed among these distances:
717 6 0.00
718 388 0.28
719 261 0.19
720 545 0.40
721 102 0.07
722 71 0.05
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (719 bp):
CGCCCGACCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
CCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
TCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGATGGCATTGGGGTTCTGACGATCG
GGGGGGCCAGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTCA
AAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
CGCC
Found at i:3438557 original size:26 final size:26
Alignment explanation
Indices: 3438521--3438573 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3438511 GTTGACTTAG
*
3438521 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3438547 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3438573 G
1 G
3438574 ATTAGAACGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Done.