Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 25 of 129
Found at i:3439447 original size:26 final size:26
Alignment explanation
Indices: 3439411--3439463 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3439401 GTTGACTTAG
*
3439411 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
3439437 GCATACAGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3439463 G
1 G
3439464 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3442590 original size:876 final size:865
Alignment explanation
Indices: 3439880--3442820 Score: 3639
Period size: 876 Copynumber: 3.4 Consensus size: 865
3439870 TTCCGAGGTG
* ** *
3439880 AATGGTCACAAAATCTTGTACACTTCAAGTTTTTATTTGAATTTTTTTGTGCATGCCAATAAAAA
1 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * * * *
3439945 TACAATGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCGAAAAAATTTTAAAAAATCTCG
66 TACAAGGATCACGACTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCG
* *
3440010 AACCAAAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC-AAGTCCTCTTGCCACGAAACTTCAC
131 AACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAA-TCCTCTTGCCATGAAACTTCAC
* * * * *
3440074 GTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTTGTACGTAGAATT
195 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
* * * * * * ** * *
3440139 ATAAAGATGTGCGTAAA-CACACATACCACTCTATCGATTCACAGCTTGCGTTTACCGTCTCTCT
260 ATGAAGATGTGCCTAAACCA-ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCT
* * *
3440203 GGCCGACGTAGTGCCCGCCCGTCCACCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAG
324 GGCCGACGTAGTG--CGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * *
3440268 TTCATTCCCAGTCTAAGATCAGACCATACCGAGGGTTGCGATAGTAGGATCGGTAGCATGCAGAA
387 TTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGTAGGATCGGCAGCACGCAG-A
* * * * * *
3440333 GGGGACTCGATCGATCCCCGACTTACGCATCCCGCCCCTCTGGCTGGCTGAGCCTCGGCACGCTC
451 GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCC-C-GTACGCTT
*
3440398 GTTTCATGAGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
514 GTTTC-TGCGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A
*
3440463 GCCAAAGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
565 --C------CGGACCGAGGGTTACGGCAGCACATGCTGGGCTC-GGCATTTGCTGGTG-CGCATT
* * * *
3440528 TTTCTTTACCGGGGCACCATTGCTGGAGCATCGTCGGAGAACCTGACAGCGACATTGGGGTT-C-
620 TTTCTTTACCGGGGCACCATCGCTGGAGCATCATCGGAGAACCTGACCGCGGCATTGGGGTTCCG
* *
3440591 -C-A-------G-C--------G--CACATGATGCGCGATGGGTACTGGTACTTGGCCCTTATAT
685 GCGATCGGGGGGCCGGGGGGGTGTCCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
3440636 TGGCCCCCTATCCCTCATCAAACTCGAGAACTCACACCTCC-TAAAGAGCATTTGAGATTTTACA
750 TGGCCCCCTATCCCTCATCAAACTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * *
3440700 GGCTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCA
815 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * *
3440751 AATAGTCACAAAATCTTGTACACTTTGAGTTTTTAGCCGAATTTTTTT-TGCATGCCAACAAAAA
1 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * *
3440815 TACAAGGATCACGACTACCAAGTTTGGGACCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCG
66 TACAAGGATCACGACTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCG
* * * * *
3440880 AACCACAAAAAATTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
131 AACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAATCCTCTTGCCATGAAACTTCACG
* *
3440945 TGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAAGGGCATTGGCACGTAGAAATA
196 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATA
* * * **
3441010 TGAAGGTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCATCTCTCTGG
261 TGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
* * **
3441075 CCGGCGGAGT--GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCA
326 CCGACGTAGTGCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * *
3441138 TTCCTAGTCTAAGATCTGATCGGACCAAGGGTTGCGGCAGTAGGATCTGCAGCACGTAGAGGGGG
391 TTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGTAGGATCGGCAGCACGCAGA-GGGG
* * * * * * * *
3441203 ACCCGACCGATCTCTGGCTTGCGCGTCCCGTCCCTCTGGCCGACTGAGCGC-T-CGCATG---CT
455 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCCCGTACGCTTGTTTCT
* * * ** * *
3441263 -CATT-TCGT-GG------GAGTTCATTCCCAGTCTAAGATCGGACTAGAACGAGGGTTGCGGCA
520 GCGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCA
* *
3441319 GCACATGCTGGGCTCGAACATATT-CTGGTGCTGCATTTTGTCTTTGCCGGGGCACCATCGCTGG
585 GCACATGCTGGGCTCG-GCAT-TTGCTGGTGC-GCATTTT-TCTTTACCGGGGCACCATCGCTGG
* * *
3441383 AGCATCACCGGAGAACCTTACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGCGGGTA
646 AGCATCATCGGAGAACCTGACC-GCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGG-GGGTG
*
3441448 TGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
708 T-C-CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
3441513 ACCTCGGGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTACCCAT
771 A-CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
3441577 TAAAGTGTCTGAAATGGGGACACTTTTTTCA
835 TAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * *
3441608 AATGGTCACAAAATCTTGTAAACTTTGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAACAAAAA
1 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* *
3441673 TACAAGGATCATGACTACCAAGTTCGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCG
66 TACAAGGATCACGACTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCG
* * * *
3441738 AATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAATCATCTTGCCATGAAACTTCACG
131 AACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAATCCTCTTGCCATGAAACTTCACG
* *
3441803 TGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCATGTAGAAATA
196 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATA
* *
3441868 TGAAGATGTGCCCAAACGAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
261 TGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
* * * * * *
3441933 CTGGCGTAGTGCGCTCCTGCCCGGCCACCCACTCGTTTCGTCGGTTGGCTTAGACATACGGAGTT
326 CCGACGTAGTGCGC-CC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
*
3441998 CATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTACGGTAGTAGGATCGGCAGCACGCAGAGGG
389 CATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGTAGGATCGGCAGCACGCAGAGGG
* * *
3442063 GACCCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGTACGTTTGTT
454 GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA--GCCCGTACGCTTGTT
*
3442128 TCGTGCGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTAT
517 TC-TGCGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTAC
* * * * * *
3442193 GGTAGCACATGCTAGGCTCAGGCATTTGCTGGTGTCGCATTTTTCTTCATCGAGGCACCATCGCC
581 GGCAGCACATGCTGGGCTC-GGCATTTGCTGGTG-CGCATTTTTCTTTACCGGGGCACCATCGCT
* *
3442258 GGAGCATCATCGGAGAACCTGACCGATGGCAATGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTG
644 GGAGCATCATCGGAGAACCTGACCG-CGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTG
* *
3442323 TACACACATGCTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCTCATCAA
708 T-C-CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * * * * *
3442388 ATTTCAAGAACTGACACCCCCTTAGAGAGCATGTGAGATTTTACAGGTTTGCTGCTAGTAGCCAT
771 A-CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
3442453 TAACGTGTCTGAAATGGGGACACTTTTTTCA
835 TAAAGTGTCTGAAATGGGGACACTTTTTTCA
*
3442484 AATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
1 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * *
3442549 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTAAAAAAATTTTAAAAAATCTCG
66 TACAAGGATCACGACTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCG
* * *
3442614 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCCTCTTGCCATGAAACTTCACG
131 AACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAATCCTCTTGCCATGAAACTTCACG
* *
3442679 TGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCGTTGGCACGTAGAAATA
196 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATA
* * * * *
3442744 TGAAGATGTGCCTAAACCCACCTTCCACCCTATCGATCCATGGCTTACGCATCCCGCCTCTCTAG
261 TGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
3442809 CCGACGTAGTGC
326 CCGACGTAGTGC
3442821 TGGTGCTGCA
Statistics
Matches: 1791, Mismatches: 216, Indels: 121
0.84 0.10 0.06
Matches are distributed among these distances:
827 2 0.00
828 46 0.03
829 41 0.02
830 13 0.01
831 1 0.00
833 1 0.00
834 2 0.00
836 1 0.00
842 1 0.00
843 1 0.00
845 1 0.00
846 1 0.00
847 1 0.00
848 2 0.00
849 20 0.01
855 2 0.00
856 64 0.04
857 128 0.07
858 263 0.15
859 1 0.00
860 2 0.00
861 45 0.03
862 100 0.06
863 3 0.00
864 1 0.00
865 6 0.00
866 138 0.08
868 1 0.00
869 1 0.00
870 250 0.14
871 46 0.03
872 2 0.00
875 75 0.04
876 396 0.22
877 61 0.03
878 70 0.04
879 2 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (865 bp):
AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
TACAAGGATCACGACTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCG
AACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAATCCTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATA
TGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
CCGACGTAGTGCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
TTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGTAGGATCGGCAGCACGCAGAGGGGA
CCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCCCGTACGCTTGTTTCTG
CGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAG
CACATGCTGGGCTCGGCATTTGCTGGTGCGCATTTTTCTTTACCGGGGCACCATCGCTGGAGCAT
CATCGGAGAACCTGACCGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTCCACATG
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCA
Found at i:3443647 original size:26 final size:26
Alignment explanation
Indices: 3443611--3443663 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3443601 GTTGACTTCG
3443611 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
3443637 GCATATGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3443663 G
1 G
3443664 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3445749 original size:867 final size:867
Alignment explanation
Indices: 3444078--3448886 Score: 5376
Period size: 875 Copynumber: 5.5 Consensus size: 867
3444068 CTTCTGAGGT
* * *
3444078 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAATAAAA
1 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * * * *
3444143 ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACT-CTTTCTAAAAAATTTTTAAAAATCCC
66 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCT
* * * * * *
3444207 GAACCAAAAAAAGTTTTAAAAATCATGAAAAATAGAAAACAAGTCCTCTTGCCAAGAAACTTCAC
131 AAACCATAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
3444272 GTCAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA-AAAT
196 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA-
* * * * *
3444336 TATAAAGATGTGCATAAACCCACATACCACTCTATCGATTCACGGCTTGCGCATCCCGTCTCTCT
260 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * ** *
3444401 GGTCGGCGTAGT----GCCCGCCCGCCCGCTCGTTTCATCGTTTATCTCAGGCATACGGAGTTCA
325 GGCCGGAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * * * *
3444462 TTCCCAGTCTAAGATCATACCATACTCAGGGTTACGATAGTAGGA-TCGGCAGCTCGCAGAAGGG
390 TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACAACAGCAGGATTC-GCAGCACGCAGAGGGG
** * * * *
3444526 GACCCGACCGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTATGCTCATT
454 GACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTT
*
3444591 TCATGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTC
519 TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATA--GAGTTC-TT-CCAGTC
* * *
3444656 AAAGATCGGTCCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTTCTGGTGCCGTATTTTT
579 -AAGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTT
* * * *
3444721 CTTTACCGGGGCGCCATTGCTGAAGCATCGCTGGAGAACCTGACCGGCGACATTGGGGTT-CC-A
643 CTTCATCGGGGCACCATTGCTGGAGCATCGCTGGAGAACCTGACCGGCGACATTGGGGTTGCCAA
* * *
3444784 -GCGCACATGATGCGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAA
708 GGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
3444848 ACCTCGAGAACTCACACCTCC-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
773 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
3444912 TAAAGTGTCTGAAATGGGGATACTTTTTTC
838 TAAAGTGTCTGAAATGGGGATACTTTTTTC
3444942 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAACAAAA
1 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* *
3445006 ATACAAGGATCATGACTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCT
66 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCT
* * * * *
3445071 AAACCACAAAACGTTTTGAAAATCATGAAAAATAAAAAATGAGTCATCTTGCCATGAAACTTCAC
131 AAACCATAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
3445136 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCACGTAGAAAT
196 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
* *
3445201 ATGAATG-TGTACCTAAACCCACCTACCACCCTATCGATCCACGGGTTGCGCATCCCGTCTCTCT
261 ATGAA-GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * **
3445265 GGTCGGAGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGATTAGGCATACAAAGTTCA
325 GGCCGGAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * * * *
3445330 TTCTCAGTTTAAGATCTGACCAAACTGAGGGTTGCAATAGCAGGATTTGCAACACGCAGAGGGGG
390 TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACAACAGCAGGATTCGCAGCACGCAGAGGGGG
* * * *
3445395 ACCCGACCGATCCCCGGCTTGCGCGTCCCGCCCCTCTGGTCGACTGAGCGCCCGCACGCTCATTG
455 ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTT
*
3445460 CATGGGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATATGGAGTTCATTCCCAGTCAG
520 CATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATA--GAGTTC-TT-CCAGTCA-
*
3445525 AGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCT
580 AGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCT
* *
3445590 TTATCGGGGCGCCATTGCTGGAGCATCGCTGGAGAACCTGACCGGCGACATTGGGGTT-CC-A-G
645 TCATCGGGGCACCATTGCTGGAGCATCGCTGGAGAACCTGACCGGCGACATTGGGGTTGCCAAGG
* * * * *
3445652 CGCACATGATGCGCGATGGGTACTGGTACTTGGCCCGTATATTGGCCCCCTATCCCTCATGATAC
710 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
3445717 CTCGAGAACTCACACCACC-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
775 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
3445781 AAGTGTTTGAAATGGGGATACTTTTTTC
840 AAGTGTCTGAAATGGGGATACTTTTTTC
3445809 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TTTTTT-TGCATGCCAACAAAA
1 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * *
3445872 ATACAAGGATCACGACTACCAAGTTTGGGGCCAAAAATCTTTTCGAAAAAATATTAAAAAAT-CT
66 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCT
* * * * * * *
3445936 CGAACCACAAAACGTTCTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
131 -AAACCATAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
3446001 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAATGGCATTGACATGTAGAA
195 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCACGCAGAA
* * ** * *
3446066 ATATGAAGATGTGCCCAAACGCACCTACCACCCTATCGATCCATAGCTTACGCATCCCGCCTCTC
259 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * *
3446131 TGACC-GACGTAGTGCCCTCCCGCCTGTCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCCTACGG
324 TGGCCGGA-GTAGTGCCCGCCCG-C---CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * **** *
3446195 AGTTCATTCCCAGTCTAAGATCAGATCAG-TTCGAGGGTTATGGTAGCAGGA-TCGGCAGCACGT
384 AGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTACAACAGCAGGATTC-GCAGCACGC
* ** * * *
3446258 AGA-GGGGAGCCGGTCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCAGCAC
447 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCAC
* * * *
3446322 GTTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAATTCTTT
512 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT--AGAGTTC-TT
* *
3446387 CTCAGTCTAAGATCGGACCAGACCGAGGGTTATGGCAGCACATGCTGGGCTCAGGCATGTGCTGG
573 C-CAGTC-AAGATC-G----GACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * * *
3446452 TGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-ATCGGAGAACCTGACCGGCGGCA
631 TGCCGTATTTTTCTTCATCGGGGCACCATTGCTGGAGCATCGCT-GGAGAACCTGACCGGCGACA
* * *
3446516 ATGGGGTTCCGGCGATAGAGGGCCGGGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTT
695 TTGGGGTT---GC--CA-A-GG-C---------G--CACATGATGTGCGATGGGTGCTGGTACTT
* ** * * *
3446581 GGCCCTTATATTGGCCCCCAATCCCTCATCAAATTTCAAGAACTCACACCCCCTTAGAGAGCATG
741 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * * *
3446646 TGAGATTTTACAGGTTTGCTTCTAGTAGCCATTAAAGTGCCTGAAATGGGGATGCTTTTTTC
806 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTC
3446708 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
1 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* *
3446773 ATACAAGGATCACGTCTACCAAGTTTGGGG-CTAAACTCCTTCCTGAAAAAATTTTAAAAAATCC
66 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC-GAAAAAATTTTAAAAAATCC
* * * * *
3446837 CAAACCGT-AAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
130 TAAACCATAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCA
3446901 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC-CTAGAA
195 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC-AGAA
* * *
3446965 ATATGAAGATGTGCCTAAACCCACCTTCTACCCTATCGATCCACCGCTTGCGCATCCCGTCTCTC
259 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* ** * **
3447030 TGGCTGGCTTAGTGCCTGCCCGCCCGCCTGCTTGCTCGTTTCGTTAGTTGGCTTAGGCATAC-G-
324 TGGCCGGAGTAGTGCCCGCCCGCCCGCC--C--GCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * ** * *
3447093 GTTTAGGGTTCCCAGTCTAAGATTAGACCAGACTGAGGGTTACGGCAGCAGGA-TCGGAAGCATG
385 GTTCA---TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACAACAGCAGGATTC-GCAGCACG
** * * *
3447157 CAGAGGGGGACCCGACCGATCCTTGGCTTGCGCATCCTGCCCCTTTGGCCGACTGAGCGCTCGCA
446 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCA
* *
3447222 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATC-----TA-AG---TT-C-
511 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGAGTTCTTCCA
* *
3447276 G----GACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGTATTT
576 GTCAAGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTT
* * * **
3447337 TTCTTCGTCGAGGCACCA-T-CATCAGAGCATCG-TCGGAGAACCTGACCGTTGACATTGGGGTT
641 TTCTTCATCGGGGCACCATTGC-T-GGAGCATCGCT-GGAGAACCTGACCGGCGACATTGGGG-T
*
3447399 CCGACGATCGGGGGGGCCAAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCC
702 -------T-------GCCAA-------G-GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
3447464 CTTATATTGGCCCCCTATCCCACATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
745 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * *
3447529 ATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTC
810 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTC
* * * * *
3447587 AAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCAGAATTTTTTTGTGAATGCCAAAAAAA
1 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
** *
3447652 ATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAAATCCTTCCGAAAAAATTTTAAAAAATTC-
66 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCT
* * *
3447716 AGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCTTGAAACTTCA
131 A-AACCATAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * *
3447781 CGTGAAGGCTCAAGGGACCATTGTATGAATTTACAACCCATAAAAATGCCATTGGCACACAGAAA
195 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* * * **
3447846 TATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCTCGGCTTGTGCATCCCGTCAGTCT
260 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * * * * *
3447911 GGCCAGCA-TTGTGCCCGCCTGCCCGCTCGCCCATTTCGTCAGTTGGCTTAGGCATACAGAGTTC
325 GGCC-GGAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * ** * * * *
3447975 ATTCCTAGTCTAAGTTCAGACTGGATTGAGGGTTGCAGCAGCAGGA-TCGACAGCACCCAGAGGG
389 ATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACAACAGCAGGATTCG-CAGCACGCAGAGGG
* * * * * * * *
3448039 GGACCCGATCGATCCCCGGATTACGCATCGCGCCCCTCTAGTCGACTGAGCACCCGCACACTCGT
453 GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGT
* *
3448104 TTCTTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTC-----TA-AG-------A-TC-AGA
518 TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGAGTTCTTCCAGTCAAGA
* ***** * * **
3448154 CCGGACCGAGGGTTGTAATAGCACATACTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCA
583 TCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCA
* * * * * * *
3448219 TCGGGGCACCATCGCTAGAGCATTGCCGGAGAAGCTGACCGGCGGCATAGGGGTT-CCGACGATC
648 TCGGGGCACCATTGCTGGAGCATCGCTGGAGAACCTGACCGGCGACATTGGGGTTGCC-A--A--
* *
3448283 GGGGGGGCCGGTGGGGGTGTGCGCACATGATATGCAATGGGTGCTGGTACTTGGCCCTTATATTG
708 ------------------G-GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
3448348 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAATAGCATTTGAGATTTTACAG
754 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * *
3448413 GTTTGCTGCCAGTAGCCACTAAAGTATTTGAAATGGGG--ACTCTTTTTC
819 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACT-TTTTTC
** *
3448461 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTCAGCATGCCAAAAAAA
1 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
*
3448526 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAA-CCT
66 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCT
* * * * ** * * * * * *
3448590 GAATCGTAAAATGTTTTGTAAATCACGAAAAATAGAAATCGAGTCGTCTTGCCATGAAAATTAAT
131 AAACCATAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
3448655 GTGAAGGCTTAAGGGACCATTGTCTGAATTTACAAACCATAAAAATGGCATTGGCACGCAGAAAT
196 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
* * *
3448720 ATGAAGATGTGCCTCAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTTTCTG
261 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * *
3448785 GCCGGCGTAGTGCCCGCCCGCCCG---G-TCATTTTGTCGATTGGCTTAGGCATACGGTGTTCAT
326 GCCGGAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* *
3448846 TCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAACAGCA
391 TCCCAGTCTAAGATCAGACCAGACTGAGGGTTACAACAGCA
3448887 CATGCTGGGC
Statistics
Matches: 3423, Mismatches: 398, Indels: 243
0.84 0.10 0.06
Matches are distributed among these distances:
859 2 0.00
860 1 0.00
862 1 0.00
863 50 0.01
864 248 0.07
865 6 0.00
866 183 0.05
867 428 0.13
868 188 0.05
869 67 0.02
870 101 0.03
871 99 0.03
872 3 0.00
873 194 0.06
874 125 0.04
875 483 0.14
876 131 0.04
877 2 0.00
878 6 0.00
879 257 0.08
880 202 0.06
881 3 0.00
883 1 0.00
884 2 0.00
885 2 0.00
886 2 0.00
887 4 0.00
888 2 0.00
890 2 0.00
891 1 0.00
892 1 0.00
893 1 0.00
895 6 0.00
896 1 0.00
897 5 0.00
898 73 0.02
899 223 0.07
900 157 0.05
901 159 0.05
902 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (867 bp):
AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCT
AAACCATAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGGAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACCAGACTGAGGGTTACAACAGCAGGATTCGCAGCACGCAGAGGGGGA
CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTC
ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGAGTTCTTCCAGTCAAGATCG
GACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCG
GGGCACCATTGCTGGAGCATCGCTGGAGAACCTGACCGGCGACATTGGGGTTGCCAAGGCGCACA
TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
CTGAAATGGGGATACTTTTTTC
Found at i:3446392 original size:26 final size:26
Alignment explanation
Indices: 3446345--3446397 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3446335 GTTGACTTAG
*
3446345 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
* *
3446371 GCATACAGAATTCTTTCTCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
3446397 G
1 G
3446398 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:3449461 original size:696 final size:702
Alignment explanation
Indices: 3448116--3449504 Score: 2042
Period size: 696 Copynumber: 2.0 Consensus size: 702
3448106 CTTGGGTTGA
* * *
3448116 CTTAGGCATACGGAGTTGATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTAATAGCACATA
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAACAGCACATA
*
3448181 CTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCTAGAGCATTGCC
66 CTGGGCCCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCA---CT--A-CA-T-CC
* * ** **
3448246 GGAGAAGCTGACCGGCGGCATAGGGGTTCCGACGATCGGGGGGGCCGGTGGGGGTGTGCGCACAT
123 GGAGAACCTAACCAACAACATAGGGGTTCCGACGATCGGGGGGGCCGGTGGGGGTGTGCGCACAT
* * *
3448311 GATATGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
188 CATATGCAATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
* * *
3448376 ACTCACACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTATT
253 ACTCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTATC
* *
3448441 TGAAATGGGGACTCTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
318 TGAAATGGGGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
3448506 TTTTCAGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCG
383 TTTTCAGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAAATCCTTCCG
* * * * * *
3448571 AAAAAATTTTAAAAAACCTGAATCGTAAAATGTTTTGTAAATCACGAAAAATAGAAATCGAGTCG
448 AAAAAATTTTAAAAAACCCGAACCGCAAAAAGTTTTGAAAATCACGAAAAATAGAAAACGAGTCG
* *
3448636 TCTTGCCATGAAAATTAATGTGAAGGCTTAAGGGACCATTGTCTGAATTTACAAACCATAAAAAT
513 TCTTGCCATGAAAATTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAAT
* *
3448701 GGCATTGGCACGCAGAAATATGAAGATGTGCCTCAACCCACCTACCACCCTATCGATCCACGGCT
578 GGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
3448766 TACGCATCCCGTCTTTCTGGCCGGCGTAGTGCCCGCCCGCCCGGTCATTTTGTCGATTGG
643 TACGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGGTCATTTTGTCGATTGG
* * *
3448826 CTTAGGCATACGGTGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAACAGCACATG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAACAGCACATA
* *
3448891 CTGGGCCCG-GCATTGTGCTGGTGCCA-ATTTTTCTTCGTCGTGGCACCA-T-CA-CCGGAGAAC
66 CTGGGCCCGAGCA-TGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCACTACATCCGGAGAAC
* *
3448951 CTAACCAACAACATTGGGGTTTCGACGATC-GGGGGGCC-G-GGGGGTGTGCGCACA-CA-ATGT
130 CTAACCAACAACATAGGGGTTCCGACGATCGGGGGGGCCGGTGGGGGTGTGCGCACATCATATG-
* *
3449011 CGATGGGTGCTGGTATTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
194 CAATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * * *
3449076 ACCCTCTTAAAGAGCAATTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTATCTGAAAT
*
3449141 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTC
* * * ** *
3449206 TGCATGCCAACAAAAATACAAGGATCAGGTCTACTGAGTTTGGAGCCAAAACTCCTTCCGAAAAA
388 AGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAAATCCTTCCGAAAAA
***
3449271 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAA-CCCGAACCGCAAAAAGTTTTGAAAATCACGAAAAATAGAAAACGAGTCGTCTT
* * * *
3449336 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAATATGGCA
517 GCCATGAAAATTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCA
* *
3449401 TTGGCAAGCAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
582 TTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACG
3449466 CATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCG
647 CATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCG
3449505 TTCGCTTAGG
Statistics
Matches: 613, Mismatches: 62, Indels: 22
0.88 0.09 0.03
Matches are distributed among these distances:
693 3 0.00
694 127 0.21
695 137 0.22
696 201 0.33
697 8 0.01
698 31 0.05
701 2 0.00
705 1 0.00
709 23 0.04
710 80 0.13
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26
Consensus pattern (702 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAACAGCACATA
CTGGGCCCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCACTACATCCGGAGAACC
TAACCAACAACATAGGGGTTCCGACGATCGGGGGGGCCGGTGGGGGTGTGCGCACATCATATGCA
ATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTATCTGAAATGG
GGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTCAGC
ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAAATCCTTCCGAAAAAATT
TTAAAAAACCCGAACCGCAAAAAGTTTTGAAAATCACGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAAATTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGG
CAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATC
CCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGGTCATTTTGTCGATTGG
Found at i:3451914 original size:871 final size:864
Alignment explanation
Indices: 3448937--3452173 Score: 4407
Period size: 872 Copynumber: 3.7 Consensus size: 864
3448927 GTCGTGGCAC
* * * *
3448937 CATCACCGGAGAACCTAACCAACAACATTGGGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCGC
1 CATCACCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGC
** * *
3449002 ACACAATGT-CGATGGGTGCTGGTATTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTC
66 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * * * *
3449066 AAGAACTCACACCCTCTTAAAGAGCAATTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAG
131 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAA
* *
3449131 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
196 TTTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* ** * *
3449196 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAGGTCTACTGAGTTTGGAGCCAAAACTCC
261 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-AAAGGTTGGGGCCAAAACTCC
* ** *
3449261 TTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAAC
325 TTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
*
3449326 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
390 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCAT
* * *
3449391 AAATATGGCATTGGCAAGCAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATCC
455 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * *
3449456 ACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTG----CCCGCCCGC-C------C-GTTCG
520 ACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCTCATTTATCGGTTCG
* * * *
3449509 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCAAGGGTTGGGGCTA-CAGGA
585 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGC-AGCAGGA
** * *
3449573 TCTACAGCACGCAGAGGGGAAC-CAGATCGAT-CCCTAGCTTGCACATCCCGCCCCTCTGGCCGG
649 TCGGCAGCACGCAGAGGGGGACTCA-ATCGATCCCCGA-CTTGCACATCCCGCCCCTCTGGCCGG
* * * * * *
3449636 CT-AAGCGCCCGAACGTTCGTTCCGTGGGTTGACTTAGGCTTACAGAGTTCATT-CTCAGTGTAA
712 CTGAA-CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCT-AGTCTAA
* * * *
3449699 GATCGACCCAGACCGAGGGTTGCGGTAGCACATGCGGGCCTTGGGCATGTGCTGGTGCCGTATTT
775 GATCGAACCAGACCGAGGGTTG-GGCAGCACATGTGGG-CTTGGGCATGTGCTGGTGCCGCATTT
*
3449764 TTCTTCATCGGTGCACCATCGCCAGAG
838 TTCTTCATCGGCGCACCATCGCCAGAG
* * *
3449791 CATCGCCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGTGGGGTCGGGGGGTGTGCGC
1 CATCACCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGC
* *
3449856 ACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTC
66 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
3449921 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAA
131 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAA
**
3449986 TTTTTGAAATGGGGACACTTTTTTCACTTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
196 TTTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
*
3450051 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTAAAAGGTTGGGGCCAAAACTCCT
261 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAAAAGGTTGGGGCCAAAACTCCT
* * ** *
3450116 TCTGAAAAAATTTTAAGAAATCTTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACG
326 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
3450181 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATA
391 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATA
* *
3450246 AAAATGGCATTGGTACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
456 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
** * * *
3450311 CGGCTTGTGCTTCCCGTCTCTCTGGCCGGCGTACTGCCTGCCCACCCGCCTGCTCATTTCGTCGG
521 CGGCTTACGCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCACCCGCCCGCTCATTT-ATCGG
* * * * * *
3450376 TTCGCTTAGGTATATGGAGTTCATTCCTAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCA
581 TTCGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCA
* * * * ** * *
3450441 GGATCGGCAGCACGTAGAGGAGGACTCGA-CTGATCCTCGACTTGTGCATCCTGCCCCTCTGCCC
646 GGATCGGCAGCACGCAGAGGGGGACTCAATC-GATCCCCGACTTGCACATCCCGCCCCTCTGGCC
* * * * *
3450505 GACTGAACGCCCGCATGCTTGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
710 GGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * ** *
3450570 GATCG-GCCCGAACCGAGGGTTGCACAGCACATGCTGGGCTTGGGCATGTGCCGGTGCCGCATTT
775 GATCGAACCAG-ACCGAGGGTTGGGCAGCACATG-TGGGCTTGGGCATGTGCTGGTGCCGCATTT
3450634 TTCTTCATCGGCGCACCATCGCCAGAG
838 TTCTTCATCGGCGCACCATCGCCAGAG
* * * * * * * * **
3450661 CATCGCTGGAGAACTTGACCGGCGGCTTTGTGATTCCGGTGATCGAGGGGGCCGGGGGGGTGTGC
1 CATCACCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCG-GGGGGCC-GGGGGGTGTGC
* * *
3450726 GCACAAGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCTCTCATCAAACC
64 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
3450791 TCGAGAATTCACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAA
129 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
3450856 AATTTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
194 AATTTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
3450921 TGAATTATTTTGTGCATGCCAACAAAAATGCAAGGATCATGTCTAAAAGGTTGGGGCCAAAACTC
259 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAAAAGGTTGGGGCCAAAACTC
* *
3450986 CTTCCGAAAAAATTTAAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
324 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
*
3451051 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTAGAA-CCA
389 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCA
* *
3451115 TAAAAATGGCATTGGTACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
454 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * *
3451180 CACGGCTTACGCTTCCCGTCTCTCTGGCTGGCGTATTGCCTGCCCACCCGCCTGCTCATTTAGTC
519 CACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCACCCGCCCGCTCATTTA-TC
* * *
3451245 AGTTCGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAG
579 GGTTCGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAG
3451310 CAGGATCGGCAGCACGCAGAGGGGGACTCAATCGATCCCCGACTTGCACATCCCGCCCCTCTGGC
644 CAGGATCGGCAGCACGCAGAGGGGGACTCAATCGATCCCCGACTTGCACATCCCGCCCCTCTGGC
* ** * * **
3451375 CGGTTGAACGCTTGCACGCTCATTTCGTGGGTTCACTTATTCATACGGAGTTCATTCCTAGTCTA
709 CGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTA
* * * * *
3451440 AGATCGAATCTGACCGAGGGTTGTGGCAGCACATGTTGGGCTCGAGCATGTGCTGGTGCGGCATT
774 AGATCGAACCAGACCGAGGGTTG-GGCAGCACATG-TGGGCTTGGGCATGTGCTGGTGCCGCATT
** * *
3451505 TTTCTTTGTCGGGGCACCATCGCCGGAG
837 TTTCTTCATCGGCGCACCATCGCCAGAG
* * * * *
3451533 CATCACCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACAATCAGGGGGGTCGAGGGGGTGTGC
1 CATCACCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATC-GGGGGGCCG-GGGGGTGTGC
*
3451598 GCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
64 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
3451663 TCGAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTATAGGTTTGCTGCCAGTAGCCACTAA
129 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
3451728 AGTATTTGAAATGGGGACACTTTTTTCAAA-GGTCACAAAATCTTGTACACTTTGAGTTTTTAGC
194 AATTTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
** * * * *
3451792 TGAATTTTTTTCAGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT
259 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-AAAGGTTGGGGCCAAAACT
* * * * ** *
3451857 CCTTTCGAAAAAATTTTAAAAAA-CCTGAATCGTAAAATGTTTCGTAAATCATGAAAAATAGAAA
323 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* * * * * *
3451921 TCGAGTCGTCTTGCCATGAAACTTAATGTGAAGGCTTAAGGGACCATTGTCTGAATTTACAAACC
388 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCC
*
3451986 ATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
453 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* ** *
3452051 CCACGGCTTGA-GCATCCCGCCTCTCTGGCTAGCGTAGTGCCCGCCCGCCCGCTCATTTCATCGG
518 CCACGGCTT-ACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCTCATTT-ATCGG
* * * * * *
3452115 GTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACTGTGGGTTGCG
581 TTCGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCG
3452174 CATCCCACCC
Statistics
Matches: 2117, Mismatches: 228, Indels: 62
0.88 0.09 0.03
Matches are distributed among these distances:
854 294 0.14
855 213 0.10
856 1 0.00
858 2 0.00
862 8 0.00
863 1 0.00
868 75 0.04
869 1 0.00
870 101 0.05
871 644 0.30
872 775 0.37
873 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (864 bp):
CATCACCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGC
ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAA
TTTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAAAAGGTTGGGGCCAAAACTCCT
TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATA
AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
CGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCTCATTTATCGGTTCGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC
GGCAGCACGCAGAGGGGGACTCAATCGATCCCCGACTTGCACATCCCGCCCCTCTGGCCGGCTGA
ACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGA
ACCAGACCGAGGGTTGGGCAGCACATGTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCAT
CGGCGCACCATCGCCAGAG
Found at i:3455810 original size:26 final size:26
Alignment explanation
Indices: 3455781--3455833 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3455771 GTTGACTTAG
*
3455781 GCATTCGGAGGTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
*
3455807 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
3455833 G
1 G
3455834 AGCCGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:3456578 original size:865 final size:875
Alignment explanation
Indices: 3454923--3461116 Score: 2935
Period size: 898 Copynumber: 6.8 Consensus size: 875
3454913 GTTGACTTAG
* * * * *
3454923 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGAGCCGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * *
3454988 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCTCGGAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTATTCATCGGGGCACCATCGACGGAGCAACTCGGACAA
* *
3455053 CCTGATCGACGGCGTTGGGTTCCGACGATCGGGGGGGTGGGCGCACATGATGTGTGATGGGTGCT
131 CCGGAT--ACGGCG-TGGG---CGAC-A-CGGGGGGGTGGGCGCACATGATGTGCGATGGGTGCT
*
3455118 GGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCATACCCGCTTAAA
188 GGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCACACCCGCTTAAA
*
3455183 GAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
253 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
3455248 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCAGACTTTTTTTATGCATACCAAA
318 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATTTTTTGATGCATACCAAA
*
3455313 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAA
383 AAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAA
* * **
3455378 TCCCAAACCGCAAAAATTTTTGAAAATCATGAAAAACAAAAAACGAGTCGTCTTGCCATGAAACT
448 TCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAACAAAAAACGAGTCGTCTTGCCATGAAACT
*
3455443 TCACGTGAAGTGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTCAA
513 TCACGTGAAGTGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAA
* * *
3455508 AAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACAGCTTGCGCATCCTGTCTC
578 AAATATAAAGATGTGCCTAAACCAACCTACCAACCTATCGATCCACAGCTTGCGCATCCCGTCTC
* * *
3455573 TCTGGCCAGCGTAGTGCCCGCCTTCCTGCCCACTCATTTCATCGGTTGGCTTAGGCATACGAAAT
643 TCTGGCCAGCATAGTG-CCGCCTTCCCGCACACTCATTTCATCGGTTGGCTTAGGCATACGAAAT
* * *
3455638 TCATTCCCTGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGCAGCACGCAAAGGGGGAC
707 TCATTCCCAGTCTAAAATCGGACCAGACCAAGGGTTGCGGCAGCAGGCAGCACGCAAAGGGGGAC
* ** *
3455703 CCGACCGATCC-CTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTC
772 CCGACCGATCCTC-GACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCAAACGCTCATTTC
* * *
3455767 ATGGGTTGACTTAGGCATTCGGAGGTCATTCCCAGTCTAA
836 ATGGCTTGACTTAGGCATACAGAGGTCATTCCCAGTCTAA
* *
3455807 GCATACGGAGTTCATTCCCAGTCTAAGAGCCGACCGGACCGAGGGTTATGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGAGCCGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* *
3455872 CTCGGGCATGTGCTGGTGCCGTATTTTTATTCATC-GGGCACCATCGACGGAG-AAC-CGGACAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTATTCATCGGGGCACCATCGACGGAGCAACTCGGACAA
* *
3455934 GCGGAT-CGG-G-GGG-G-C-C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
131 CCGGATACGGCGTGGGCGACACGGGGGGGTGGGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
3455992 GCCCTTATATTGGCCCCCTATCGC-TCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATT
196 GCCCTTATATTGGCCCCCTATC-CATCATCAAACCTCGAGAACTCACACCCGCTTAAAGAGCATT
*
3456056 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGAAATGGGGACACTTTTTTCAAA
260 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* ** * * *
3456121 TGGTCACCAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTGGTGCAT-GCAACAAAAATA
325 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATTTTTTGATGCATACCAAAAAAAATA
* *
3456185 AAAGGATCACGTGTACCAAGTTTGGGG-CAAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCAA
390 AAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA-TCCTTCCAAAAAAATTTTAAAAAATCCCAA
* * * * * *
3456249 ACCATAAAAAGTTTCAAAAATCTTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGT
454 ACCACAAAAAGTTTCAAAAATCATGAAAAACAAAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * * *
3456314 GAAG-GCTTAAGGGACCGTTGTATGAATTTACAAGCTATAAAAATGGCATTGGCAGGCAGAAATA
519 GAAGTG-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATA
* *
3456378 TAAAGATGTGCCTAAACCCACCTACCAACC-ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
583 TAAAGATGTGCCTAAACCAACCTACCAACCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGG
* * * * *
3456442 CC-GACATAGTG-C-CC-TCCCGCACGCTCGTTTCGTTGGTTGGCTTAGGCATACGAAGTTCATT
648 CCAG-CATAGTGCCGCCTTCCCGCACACTCATTTCATCGGTTGGCTTAGGCATACGAAATTCATT
* * * * * *
3456503 CCCAGTCTAAAATCGGATCGGATCAAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGGGAC
712 CCCAGTCTAAAATCGGACCAGACCAAGGGTTGCGGCAGCA-G---G-CAGCACGCAAAGGGGGAC
* * ** * * *
3456568 CCGGCCGATCCTCGACTTGTGCATCTTGCCCCTCTGGCCGACTGAGGGCCCAAATGCTCATTTCG
772 CCGACCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCAAACGCTCATTTCA
*
3456633 TGGCTTGACTTAGGCATACAGAGTTCATTCCCAG--T--
837 TGGCTTGACTTAGGCATACAGAGGTCATTCCCAGTCTAA
* **
3456668 -C-T---GAG---------A-TC----A---GACCGGACCGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGAGCCGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* ** * * * * * * *
3456711 TTCAAGCATGTGCTGGTGTCAG-ATTTTTCTTCGTCGGGGCACCATTGTCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTG-CCGCATTTTTATTCATCGGGGCACCATCGACGGAGCAAC-TCGGAC
* * * * * *
3456775 AACCTGACCGACGGCATTAGGGTTCCAACGATTGAGGGGGCAGGGGGGTTGTCCGCACATGATGT
129 AACCGGA--TACGGC-GT-GGG------CGA--CACGGGG--GGGTGG--G--CGCACATGATGT
* ** * * * * * * * * *
3456840 GCG--GGG-G-TTGTAC---GCATTTTTCGTCGTCGGGGCACC-GTCGA-CGGAGC-ATCGTCGG
176 GCGATGGGTGCTGGTACTTGGCCCTTAT-AT--T--GGCCCCCTATCCATC--ATCAAACCTC-G
* * * ** **** * ** *
3456895 AGAACCTGACCAACGGCATT---G-GGGTTTCGACGATCGGGGGCCGGGGGGTG-TGCACAGAAG
233 AGAA-CTCA-CACCCGC-TTAAAGAGCATTT-GA-GAT---TTTAC-AGGTTTGCTGC-CAGTAG
* * * * * * * ** ** *
3456955 --ATGTGCAATGGGTGCTAGTACT-TGG-CCCTTATATTGGCCCCCTATCCCTCATC-AAACCTT
288 CCAT-T--AAAGTGT-CT-GAAATGGGGACACTT-T-TT----TCAAAT-GGTCA-CAAAATCTT
* *** * *
3457015 GAGAACTCACACCCCTTAAAGACCATTT-G-AGATTTTATAGGTTTGCTGCCAGTAGCCATTAAA
340 --G---T-ACA---CTT--CGAGTTTTTAGCAGA-ATT-T---TTTGATG-CA-TA-CCA--AAA
*** * * * ** * * * **** **
3457078 ATGTCTTAAATGGGGA-CACTTTTTTCAA--AT--GGTCACAAAATCTTGTACACTTCGAGTTTT
384 A--AAATAAA--AGGATCACGTCTACCAAGTTTGGGGCCA-AAAATCCT-T-C-CAAAAAAATTT
** * ***** **** * * ** * *
3457138 TAGCTGAATTTTTTTACGCATGCCAA----CAAAAATACAAGGATCACATCTAAAA-G-GT--TG
441 TA--AAAAATCCCAAAC-CACAAAAAGTTTCAAAAAT-CATGAAAAACA--AAAAACGAGTCGTC
** * * * * *** * ** * **
3457195 GGGCCA--AAACTCCTTC-TGAAAAAATTTTAAAAAATC-TTGAACCGTAAAAAGTTTTAAAAAT
500 TTGCCATGAAACTTC-ACGTG---AAGTGTTAAGGGACCATT-----GTATGAA--TTTACAAGC
* * * * ** * * * * * **
3457256 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT-TCACG-TGAAGGCTTAAGGGACCATT
554 CAT-AAAAAT-G---GC-A-TTGGCACG-CA--AAAATATAAAGATG--TGCCTAA---ACCAAC
* ** ** * * ** * *** * *** * **
3457319 GTATGAATTTAGAAGCCATAAAAATGGCATTG-GCACTCAAAAATATGAAGATGTGCCTAAACCC
604 CTACCAACCT---ATCGATCCACA--GC-TTGCGCA-TC--CCGTCT--CTCTG-GCC--AGCAT
* * * * * ** * *
3457383 ACCTACCACCCTATCGATC-CACGGCTTGCGCATCCCGTCTC-TCTGGACGGCGTAGTGCCCGCC
655 A-GTGCC-GCCT-TC--CCGCAC-AC-T---CAT----T-TCATC-GGTTGGCTTA--G---GCA
** * * ** * * * **
3457446 TACCCG-CCTGTC-TTCTCATTTCGT-CGATTGG-CTTAG-GCATACGGAGTT-CATTCCCAGTC
699 TA--CGAAAT-TCATTCCCA-GTC-TAAAATCGGAC-CAGACCA-A-GG-GTTGC---GGCAG-C
* ** ** *** * * * * * * * *
3457505 TAAGATCAG-AC-CAGAGAGCAGGA-TTGGTAGCATGC-AGA--GGGGGAGCCCACCGATCC-CC
751 --AG-GCAGCACGCA-A-AGGGGGACCCGACCG-ATCCTCGACTTGCGCATCCCGCC---CCTCT
* ** * * * *
3457563 GACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGTTCTTTTCGTGGGTTGACTTAG
807 GGC---CG-A------------------CTGAGCGCCCAAACGCTCATTTCATGGCTTGACTTAG
*
3457628 GCATAC-GAAGTTCATTCCCAGTCTAA
850 GCATACAG-AGGTCATTCCCAGTCTAA
* *** * * * ** *
3457654 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACTGGACCAAGGGTTGCGATAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGAGCCGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * ** * * *
3457719 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTTGTCGGGGCACCATCGCCAGAGCATCACTGGGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTATTCATCGGGGCACCATCGACGGAGCA--ACT-CGG-
* * ** * * *
3457784 ACCTGACCGGCTGTATTAGGGTTTCGGCGATCGTCGGGGCCGAGGGGGTGTGCGCACATGATGTG
127 A-C-AACC-G--G-A-TACGGCGTGGGCGA-C-AC---G--G-GGGGGTGGGCGCACATGATGTG
* * *
3457849 CGAAGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCGAGAACTCAC
177 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCAC
* * *
3457914 ACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
242 ACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
3457979 GGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTG-
307 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATTTTTTGA
* * * * * * * *
3458043 GGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTTTGGGCCAAAACTCCTTTCGAAAA
372 TGCATACCAAAAAAAATAAAAGGATCACGTCTACCAAG-TTTGGGGCCAAAAATCCTTCCAAAAA
* ** ** * * * *
3458108 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGCCT
436 AATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAACAAAAAACGAGTCGTCT
* *
3458173 TGCCATGAAACTTCACGTGTAG-GCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGG
501 TGCCATGAAACTTCACGTGAAGTG-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
3458237 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
565 CATTGGCACGCAAAAATATAAAGATGTGCCTAAACCAACCTACCAACCTATCGATCCACAGCTTG
* ** ** * ** *
3458302 CGCTTCCCACCTCTCTGGCC-GACATAGTGCCCGCCCGCCCGC-CTGCTTGTTTCGTCGGTTGGC
630 CGCATCCCGTCTCTCTGGCCAG-CATAGTG-CCGCCTTCCCGCAC-ACTCATTTCATCGGTTGGC
** * * * * * * *
3458365 TTACACATACGGAGTTCATTCCTAGTCTAAGAGT-GGACC-GAACCGAGGGTTGAGGTAGCAGG-
692 TTAGGCATACGAAATTCATTCCCAGTCTAA-AATCGGACCAG-ACCAAGGGTTGCGGCAGCAGGC
* * * * * * *
3458427 ATCGACAGCACATAGAGGGGGACCCGACAGATCCCCGGCTTGCGCAGCCCGCCCCTCTGGCTGGC
755 A--G-CA-CGCA-A-AGGGGGACCCGACCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGAC
** * ** * * * * *
3458492 TGAGCGCCCGTACGCTCGTTTCGCGGGTTGATTTAGGCATACGGAGTTCATTCGCAGTCTAA
814 TGAGCGCCCAAACGCTCATTTCATGGCTTGACTTAGGCATACAGAGGTCATTCCCAGTCTAA
* * * * * * * * *
3458554 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTATGGTAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGAGCCGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * * *
3458619 CTCGGGCATGCGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAACATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTATTCATCGGGGCACCATCGACGGAGCAAC-TC-G-G-
** * * * *
3458684 ACTAGACCGACGGCATTGGGGTTCCAACGATTGGGGGGGC-C-GGGGGGTGTGCGCAAATGATGT
127 AC-A-A-C--CGG-A-TACGG------CG--T-GGGCGACACGGGGGGGTGGGCGCACATGATGT
* *
3458747 GCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTAT-CACTCATCAAACCTCAAGAACTC
176 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCA-TCATCAAACCTCGAGAACTC
* * * * *
3458811 ACACCCCCATAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTATCCATTAAAGTGCCTGAA
240 ACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
3458876 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
305 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAA-TTTTT
* * * * ** * *
3458941 TG-TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTAAGGGCCAAAAATCCTTTCGAA
369 TGATGCATACCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAA
* * * * *
3459005 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
434 AAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAACAAAAAACGAGTCGT
* *
3459070 CTTGCCATGAAACTTCACGTGATG-GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAA
499 CTTGCCATGAAACTTCACGTGAAGTG-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * * * * *
3459134 GGCATTGGCATGTAGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
563 GGCATTGGCACGCAAAAATATAAAGATGTGCCTAAACCAACCTACCAACCTATCGATCCACAGCT
* * ** * ** *
3459199 TGCGCATCCCGTCTCTCTAGCC-GACGTAGTGCCCGCCCACCCGCCCGATCGCTTGTTTCGTCGG
628 TGCGCATCCCGTCTCTCTGGCCAG-CATAGTG-CCGCCTTCCCG--C-A-CACTCATTTCATCGG
* * * * * *** * * *
3459263 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATTGAGGGTTACGACAGTA
687 TTGGCTTAGGCATACGAAATTCATTCCCAGTCTAAAATCGGACCAGACCAAGGGTTGCGGCAGCA
* * * * * *
3459328 GGATCGGTAGCACGTAGAA-GGGGACCCGACTGATCCTCGGCTTGCGCATCCCACCCCTTTGGTC
752 GG--C---AGCACGCA-AAGGGGGACCCGACCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCC
** * * * * * *
3459392 GACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGGTCTAA
811 GACTGAGCGCCCAAACGCTCATTTCATGGCTTGACTTAGGCATACAGAGGTCATTCCCAGTCTAA
* * * ** * *
3459457 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGAGCCGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * * * * * *
3459522 CTTGTGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCCGAGCATCGTCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTATTCATCGGGGCACCATCGACGGAGCAAC-TCGGACA
* * * *
3459587 ACCTGACCGACGGCATTGGGGTTTCGGCGACCGGGGGGGCCGCAGGTGTGTGCGCACATGATGTG
130 ACCGGA--TACGGC-GT-GGG---CGAC-A-C---GGGG--G--GGTG-G-GCGCACATGATGTG
* *
3459652 CGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
177 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCAC
*
3459717 ACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
242 ACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
3459782 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTG
307 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGA-ATTTTTTG
* * * * * * * * *
3459847 -TGAATGCCAAAAAAAATACAAGGATCATGTCTACAAAGTTTGGGGGCAAAACTCCTTTCGAAAA
371 ATGCATACCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAA
* * ** ** * * * *
3459911 AATTTTTAAAAATTCTGAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCT
436 AATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAACAAAAAACGAGTCGTCT
* * *
3459976 TGCCTTGAAACTTCACATGAAG-GCTCAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
501 TGCCATGAAACTTCACGTGAAGTG-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *** * * * * * *
3460040 CATTGGCATGTGGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCTCGGCTTG
565 CATTGGCACGCAAAAATATAAAGATGTGCCTAAACCAACCTACCAACCTATCGATCCACAGCTTG
* * * * * ** * * *
3460105 TGCATCTCGTCACTCTGGCC-GACGTTGTGCTCGCCCACCCGCCCGCTCATTTCGTCGGTTGGCT
630 CGCATCCCGTCTCTCTGGCCAG-CATAGTGC-CGCCTTCCCGCACACTCATTTCATCGGTTGGCT
* * * * ** * * * * *
3460169 TAGGCATACGGAGTTCAGTACCAGTCTAAGGTCAGACTAGACCGAGGGTTGTGGCAGCAGGATCG
693 TAGGCATACGAAATTCATTCCCAGTCTAAAATCGGACCAGACCAAGGGTTGCGGCAGCAGG--CA
* * * * * * * *
3460234 GTA-ACAAGTAGGGGGGACCCGGCCGATCCTCGGCTTGCACATCCCACCCCTCTAGCC-AGTTGA
756 GCACGCAA--A-GGGGGACCCGACCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGA-CTGA
* ** * * * * *
3460297 GCGCTCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
817 GCGCCCAAACGCTCATTTCATGGCTTGACTTAGGCATACAGAGGTCATTCCCAGTCTAA
* * * *
3460356 GCATATGGAGTTCATTCCCAGTCTAA-ATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGAGCCGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * * * *
3460420 CTCGAGCATGTGCTGGTGCCTCATTTTTCTTCACCGTGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTATTCATCGGGGCACCATCGACGGAGCAAC-TCGGACA
* * * * *
3460485 ACCTGACCGACGGCATTGGGGTTTCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
130 ACCGGA--TACGGC-GT-GGG---C---GA-C-------ACGGGGGGGTGGGCGCACATGATGTG
* * * ** * * *
3460550 CGTTGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAATGTTGAGAATTCAT
177 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCAC
* *
3460615 AGCCC-ATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAA
242 A-CCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
3460679 TGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
306 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAA-TTTTTT
* * * * *
3460744 G-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
370 GATGCATACCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAA
* * *** ** * * *
3460808 AAGTTTTAAAAACTCTGGAACCGTAAAAAGTTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGT
435 AAATTTTAAAAAATCCCAAACCACAAAAAG-TTTCAAAAATCATGAAAAACAAAAAACGAGTCGT
* * * * **
3460872 CTTGCCATGAAACATCATGTGAAG-GCTAAGGGGACCATTATATGAATTTACAAGAAATAAAAAT
499 CTTGCCATGAAACTTCACGTGAAGTGTTAA-GGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
3460936 GGCATTGGCACGGATAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCT
563 GGCATTGGCACGCAAAAATATAAAGATGTGCCTAAACCAACCTACCAACCTATCGATCCACAGCT
* * * ** * * * * *
3461001 TACGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCACCTGCCCGCTCGTTTCGTCGGTTGGC
628 TGCGCATCCCGTCTCTCTGGCCAGCATAGTG-CCGCCTTCCCGCACACTCATTTCATCGGTTGGC
* * * * * *
3461066 TTAGGCATACGGACTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTT
692 TTAGGCATACGAAATTCATTCCCAGTCTAAAATCGGACCAGACCAAGGGTT
3461117 TCAACAGCAA
Statistics
Matches: 4116, Mismatches: 789, Indels: 796
0.72 0.14 0.14
Matches are distributed among these distances:
839 57 0.01
840 17 0.00
841 2 0.00
842 1 0.00
843 8 0.00
846 5 0.00
847 1 0.00
850 3 0.00
856 3 0.00
857 1 0.00
859 1 0.00
860 74 0.02
861 8 0.00
862 5 0.00
863 2 0.00
864 59 0.01
865 312 0.08
866 228 0.06
867 8 0.00
868 19 0.00
869 4 0.00
870 6 0.00
871 10 0.00
872 8 0.00
873 5 0.00
874 5 0.00
875 3 0.00
877 1 0.00
878 6 0.00
879 9 0.00
880 1 0.00
881 10 0.00
882 2 0.00
883 16 0.00
884 90 0.02
885 3 0.00
888 10 0.00
889 4 0.00
890 6 0.00
891 3 0.00
893 6 0.00
894 4 0.00
895 6 0.00
896 1 0.00
897 8 0.00
898 637 0.15
899 577 0.14
900 300 0.07
901 24 0.01
902 32 0.01
903 276 0.07
904 482 0.12
905 14 0.00
906 3 0.00
907 9 0.00
908 9 0.00
909 5 0.00
912 1 0.00
913 1 0.00
914 4 0.00
915 5 0.00
916 3 0.00
917 11 0.00
919 3 0.00
920 10 0.00
921 14 0.00
922 10 0.00
923 4 0.00
924 23 0.01
925 8 0.00
926 8 0.00
927 5 0.00
929 2 0.00
931 11 0.00
932 6 0.00
934 2 0.00
935 1 0.00
936 2 0.00
938 2 0.00
939 1 0.00
940 6 0.00
941 4 0.00
942 4 0.00
943 4 0.00
944 4 0.00
946 5 0.00
947 2 0.00
949 2 0.00
950 2 0.00
951 14 0.00
952 4 0.00
953 1 0.00
954 6 0.00
956 4 0.00
957 15 0.00
958 18 0.00
959 4 0.00
960 21 0.01
961 16 0.00
962 6 0.00
963 7 0.00
964 3 0.00
965 2 0.00
968 1 0.00
969 6 0.00
970 9 0.00
972 9 0.00
973 12 0.00
974 8 0.00
975 17 0.00
976 12 0.00
977 12 0.00
978 7 0.00
979 15 0.00
980 1 0.00
981 3 0.00
982 50 0.01
983 4 0.00
984 1 0.00
986 6 0.00
987 4 0.00
988 6 0.00
991 6 0.00
992 1 0.00
995 1 0.00
996 1 0.00
997 8 0.00
998 3 0.00
1000 1 0.00
1001 2 0.00
1002 4 0.00
1003 5 0.00
1004 9 0.00
1005 10 0.00
1006 5 0.00
1007 7 0.00
1008 97 0.02
1009 7 0.00
1010 21 0.01
1011 13 0.00
1012 11 0.00
1013 4 0.00
1014 5 0.00
1015 7 0.00
1016 4 0.00
1017 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (875 bp):
GCATACGGAGTTCATTCCCAGTCTAAGAGCCGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTATTCATCGGGGCACCATCGACGGAGCAACTCGGACAA
CCGGATACGGCGTGGGCGACACGGGGGGGTGGGCGCACATGATGTGCGATGGGTGCTGGTACTTG
GCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCACACCCGCTTAAAGAGCATTT
GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATTTTTTGATGCATACCAAAAAAAATAA
AAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAAC
CACAAAAAGTTTCAAAAATCATGAAAAACAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
AGTGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATAA
AGATGTGCCTAAACCAACCTACCAACCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCA
GCATAGTGCCGCCTTCCCGCACACTCATTTCATCGGTTGGCTTAGGCATACGAAATTCATTCCCA
GTCTAAAATCGGACCAGACCAAGGGTTGCGGCAGCAGGCAGCACGCAAAGGGGGACCCGACCGAT
CCTCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCAAACGCTCATTTCATGGCTTGAC
TTAGGCATACAGAGGTCATTCCCAGTCTAA
Found at i:3457665 original size:26 final size:26
Alignment explanation
Indices: 3457628--3457680 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3457618 GTTGACTTAG
3457628 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
3457654 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3457680 G
1 G
3457681 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:3458557 original size:26 final size:26
Alignment explanation
Indices: 3458528--3458580 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3458518 GTTGATTTAG
* *
3458528 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3458554 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3458580 G
1 G
3458581 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3459001 original size:899 final size:898
Alignment explanation
Indices: 3456852--3461116 Score: 5953
Period size: 898 Copynumber: 4.8 Consensus size: 898
3456842 GGGGGTTGTA
* * * *
3456852 CGCATTTTTCGTCGTCGGGGCACCGTCGACGGAGCATCGTCGGAGAACCTGACCAACGGCATTGG
1 CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGG
* * * * * *
3456917 GGTTTCGACGATC--GGGGGCCGGGGGGTGTGCACAGAAGATGTGCAATGGGTGCTAGTACTTGG
66 GGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
3456980 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAGACCATTTG
131 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * *
3457044 AGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAATGTCTTAAATGGGGACACTTTTTTCAAATG
196 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
**
3457109 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTACGCATGCCAACAAAAATACA
261 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
** * * **
3457174 AGGATCACATCTA-AAAGGTTGGGGCCAAAACTCC-TTCTGAAAAAATTTTAAAAAATCTTGAAC
326 AGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAAC
3457237 CGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
390 CGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* *
3457302 AGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCAC-TCAAAAATATG
455 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT-AGAAATATG
*
3457366 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGAC
519 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * *
3457431 GGCGTAGTGCCCGCCTACCCGCCTGTCTTCTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCA
584 GACGTAGTGCCCGCCCACCCGCCTG-C-T-T-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* ***
3457496 TTCCCAGTCTAAGAT----CAGACC-A-----GA-G-AGCAGGATTGGTAGCATGCAGAGGGGGA
645 TTCCCAGTCTAAGATAGACCAGACCGAGGGTTGAGGCAGCAGGATCGGTAGCACATAGAGGGGGA
* * * * *
3457549 GCCC-ACCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGTTCTTTT
710 -CCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* *
3457613 CGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCT
774 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
** * * * * *
3457678 AAGATTGGA-CTGGACCAAGGGTTGCGATAGCACATGTTGGGCTCGGGCATGTGCTGGTGC
839 AAGATCAGATC-AGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * * * * * * *
3457738 CGTATTTTTCTTTGTCGGGGCACCATCGCCAGAGCATC-ACTGGGGAACCTGACCGGCTGTATTA
1 CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTGACCGACGGCATTG
** *
3457802 GGGTTTCGGCGATCGTCGGGGCCGAGGGGGTGTGCGCACATGATGTGCGAAGGGTGCTGGTACTT
65 GGGTTTCGGCGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
3457867 GGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGTGCATT
129 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
3457932 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
194 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * *
3457997 TGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGGGCATGCCAAAAAAAATA
259 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
*
3458061 CAAGGATCATGTCTACCAAGTTTTTGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGA
324 CAAGGATCATGTCTACCAAG-TTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGA
* *
3458126 ACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACGT
388 ACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* *
3458191 GTAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
453 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
* * **
3458256 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCTTCCCACCTCTCTGGC
518 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * **
3458321 CGACATAGTGCCCGCCCGCCCGCCTGCTTGTTTCGTCGGTTGGCTTACACATACGGAGTTCATTC
583 CGACGTAGTGCCCGCCCACCCGCCTGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * **
3458386 CTAGTCTAAGAGTGGACC-GAACCGAGGGTTGAGGTAGCAGGATCGACAGCACATAGAGGGGGAC
648 CCAGTCTAAGA-TAGACCAG-ACCGAGGGTTGAGGCAGCAGGATCGGTAGCACATAGAGGGGGAC
* * * * *
3458450 CCGACAGATCCCCGGCTTGCGCAGCCCGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTCGTTTCG
711 CCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * * *
3458515 CGGGTTGATTTAGGCATACGGAGTTCATTCGCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
776 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
3458580 GATCAGATCAGATCGAGGGTTATGGTAGCATATGCTGGGCTCGGGCATGCGCTGGTGC
841 GATCAGATCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * *
3458638 CACATTTTTCTTCGTCGGGGCACCATCGTCGGAACATCGTCAGAGAA-CTAGACCGACGGCATTG
1 CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT-GACCGACGGCATTG
* ** * *
3458702 GGGTTCCAACGATTGGGGGGGCCGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTG
65 GGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * * * *
3458767 GCCTTTATATTGGCCCCCTATCACTCATCAAACCTCAAGAACTCACACCCCCATAAATAGCATTT
130 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
3458832 GAGATTTTACAGGTTTGCTGCCAGTATCCATTAAAGTGCCTGAAATGGGGACACTTTTTTCAAAT
195 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
3458897 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
260 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
** *
3458962 AAGGATCATGTCTACCAAGTTAAGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAAC
325 AAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAAC
* *
3459027 CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
390 CGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * *
3459092 TGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCATGTAGAAATATGA
455 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGA
* *
3459157 ATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCG
520 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
3459222 ACGTAGTGCCCGCCCACCCGCCCGATCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
585 ACGTAGTGCCCGCCCACCCG-CC--T-GCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* ** * * * *
3459287 TCCCAGTCTAAGATCAGATCAGATTGAGGGTT-ACGACAGTAGGATCGGTAGCACGTAGAAGGGG
646 TCCCAGTCTAAGAT-AGACCAGACCGAGGGTTGA-GGCAGCAGGATCGGTAGCACATAGAGGGGG
* * * * * *
3459351 ACCCGACTGATCCTCGGCTTGCGCATCCCACCCCTTTGGTCGACTGAGCGCCCGTACGCTCGTTT
709 ACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
*
3459416 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGGTCTAAGCATACGGAGTTCATTCCCAGTCT
774 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * * *
3459481 AAGATCGGATCAAACCGAGGGTTGC-AGCAGCACATGCTGGGCTTGTGCATGTGCTGGTGT
839 AAGATCAGATCAGACCGAGGGTTACGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* *
3459541 CGCATTTTTCTTCGTCGGGGCACCATCGTCCGAGCATCGTCGAAGAACCTGACCGACGGCATTGG
1 CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGG
* * * *
3459606 GGTTTCGGCGACCGGGGGGGCCGCAGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTG
66 GGTTTCGGCGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
3459671 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCGCTTAAAGAGCATTT
130 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
3459736 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAAT
195 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
3459801 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTGTGAATGCCAAAAAAAATAC
260 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * * *
3459866 AAGGATCATGTCTACAAAGTTTGGGGGCAAAACTCCTTTCGAAAAAATTTTTAAAAATTCTGAAC
325 AAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAAC
** * *
3459931 CGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAACTTCACATGA
390 CGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * *
3459996 AGGCTCAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTGGAAATATGA
455 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGA
* * * * *
3460061 TGATGTGCCTAAACCCACCTACCACCCTATCGATCCTCGGCTTGTGCATCTCGTCACTCTGGCCG
520 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * ** * *
3460126 ACGTTGTGCTCGCCCACCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCAGTACC
585 ACGTAGTGCCCGCCCACCCGCCTGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * *
3460191 AGTCTAAGGTCAGACTAGACCGAGGGTTGTGGCAGCAGGATCGGTAACA-AGTAG-GGGGGACCC
650 AGTCTAAGAT-AGACCAGACCGAGGGTTGAGGCAGCAGGATCGGTAGCACA-TAGAGGGGGACCC
* * * * * * * * *
3460254 GGCCGATCCTCGGCTTGCACATCCCACCCCTCTAGCCAGTTGAGCGCTCGCATGCTCATTTCGTG
713 GACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
*
3460319 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAA-A
778 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * *
3460383 TCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGC
843 TCAGATCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* ** *
3460439 CTCATTTTTCTTCACCGTGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGG
1 CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGG
* *
3460504 GGTTTCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGTTGGGTGCTGGTACTTG
66 GGTTTCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* ** * * * * *
3460569 GCCCTTATACTGGCCCCCTATCCCTCATCAAATGTTGAGAATTCATAGCCCATTAAAGAGCATTT
130 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
3460634 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGACACTTTTTTTAAAT
195 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
3460699 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
260 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * * **
3460764 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAGTTTTAAAAACTCTGGAAC
325 AAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAAC
* * *
3460829 CGTAAAAAGTTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACATCATGTGA
390 CGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* ** * *
3460894 AGGC-TAAGGGGACCATTATATGAATTTACAAGAAATAAAAATGGCATTGGCACGGATAAATATG
455 AGGCTTAA-GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATG
* *
3460958 AAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCC
519 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * *
3461023 AACGTAGTGCCCGCCCACCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGACTTCATTCC
584 GACGTAGTGCCCGCCCACCCGCCTGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* *
3461088 CAGTCTAAGATTGGATCAGACCGAGGGTT
649 CAGTCTAAGA-TAGACCAGACCGAGGGTT
3461117 TCAACAGCAA
Statistics
Matches: 2994, Mismatches: 341, Indels: 76
0.88 0.10 0.02
Matches are distributed among these distances:
885 1 0.00
886 62 0.02
887 42 0.01
888 9 0.00
889 116 0.04
890 118 0.04
891 242 0.08
892 8 0.00
893 1 0.00
897 2 0.00
898 651 0.22
899 567 0.19
900 369 0.12
901 2 0.00
902 3 0.00
903 323 0.11
904 478 0.16
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGG
GGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
AGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACC
GTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
CGTAGTGCCCGCCCACCCGCCTGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
GTCTAAGATAGACCAGACCGAGGGTTGAGGCAGCAGGATCGGTAGCACATAGAGGGGGACCCGAC
CGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
GATCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
Found at i:3459460 original size:26 final size:26
Alignment explanation
Indices: 3459431--3459483 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3459421 GTTGACTTAG
*
3459431 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3459457 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3459483 G
1 G
3459484 ATCGGATCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3460359 original size:26 final size:26
Alignment explanation
Indices: 3460330--3460381 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
3460320 GTTGACTTAG
3460330 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3460356 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3460382 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3461974 original size:26 final size:26
Alignment explanation
Indices: 3461938--3461990 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3461928 GTTGACTTAG
*
3461938 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
3461964 GCATGCGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3461990 G
1 G
3461991 ATCGGATGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:3462711 original size:26 final size:26
Alignment explanation
Indices: 3462675--3462727 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3462665 GTTGGCTTAG
* * *
3462675 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
3462701 GCATACAGAGTTCATACCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
3462727 G
1 G
3462728 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAGTCTAA
Found at i:3463326 original size:730 final size:727
Alignment explanation
Indices: 3461906--3464158 Score: 2975
Period size: 730 Copynumber: 3.1 Consensus size: 727
3461896 GCCAGCTGAG
* * *
3461906 CGCCCG-CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGC
1 CGCCCGTC-CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* ** * *
3461970 GGAGTTCATTCCCAATCTAAGATCGGATGGGACTGAGGGTTGCGGTAG-ACATGCTGGGCTCGAG
65 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAG
** * ** **
3462034 CATGTGCTGGTTTCGTATTTTTCTTTGCCAAGGCACCATCGTCGGAGCATCGTCAGAGAACCTGA
130 CATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCA---TC---GC--C--C-GAGAACCTGA
* *
3462099 CCGACGGTATTGGGGTTCCGGCA-TCAGGGGGCCA-GGGGGTGTGCGCACATGATGTGCGATGGG
184 CCGACGGTATTGGGGTTCCCG-ATTGAGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGG
* * * * * *
3462162 TGCTGGTACTT-GTCGTTATATTGGTCCCCTATCCCTCATCAAACTTCGAGAACTCACAACCCCT
248 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
* * **
3462226 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTCAAATGGGGTTA
313 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
3462291 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTGTTTTGTGCATGC
378 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
3462356 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCAAAAC-ACTTTCCGAAAAAATTTTT
443 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG-GCCAAAACTACTTTCC-AAAAAA-TTTT
* * * * *
3462420 AAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAATCGTCTTGCCAT
505 AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
3462485 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGC
570 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * ** * * *
3462550 ACGCAGAAATATGAAGATGTGCCTAAACTGACCTACCACACTATCGATCCCCGGCTTGCGCATCC
635 ATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCC
3462615 TGTCTCTCTGGCCGACGTAGTGCCCGCC
700 TGTCTCTCTGGCCGACGTAGTGCCCGCC
* *
3462643 CGCCCGTCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCCGTCTAAGCATACA
1 CGCCCGTCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * ** *
3462708 GAGTTCATACCCAGTCTAAGATTGGACCGGACCAAGGGTTGCACCAGCACATGCTGCGCTCGAGC
66 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGC
*
3462773 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCCGAGAACCTGATCGACGGTATTG
131 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCCGAGAACCTGACCGACGGTATTG
* * ** *
3462838 GGGTTCCAATGATTGGGGGGGCCAGGGGGGTGTGCGCACATGATGTATGATGGATGCTGGTACTT
196 GGGTTCC--CGATTGAGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
3462903 GGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
259 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
* * *
3462968 TGAGATTATACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAT
324 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
3463033 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATA
389 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
* * *
3463098 CAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTTC-TTCCAAAAATATTTTAAAAAATTTTGA
454 CAAGGATCACGTCTACCAAGTTTGGG-CCAAAACTACTTTCCAAAAA-ATTTTAAAAAATCTCGA
* *
3463162 ACAGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
517 ACCGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * *
3463227 GAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATAC
582 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATAT
*
3463292 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCTGTTTCTCTGGC
647 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCTGTCTCTCTGGC
3463357 CGACGTAGTGCCCGCC
712 CGACGTAGTGCCCGCC
** * * *
3463373 CGCCCGTCCG-TCCGTCCGCTC-GTT---TT--G--T--GG-GTTGA----C--T-TAGGCATAC
1 CGCCCGTCCGCTCATTTCG-TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * *
3463419 GGAGTTCATTCCCTGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
65 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAG
* *
3463484 TATGTGCTGGTGCCGCATTTTTCTTCACCGGGGTGCCATCGTCGGAGCATCGCCGGAGAACCTGA
130 CATGTGCTGGTGCCGCATTTTTCTTCACC-GGG-G-CA----C----CATCGCCCGAGAACCTGA
* ** * * *
3463549 CCGACGGTTTTGGGGTTTTGGCGATCGAGGGGG-CTGGGGGGTGTGCGCGCATGATGTGCGATGG
184 CCGACGGTATTGGGG--TTCCCGATTGAGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGG
* * * * *
3463613 GTGGTGGTACTTGGGCCTTGTATTGGCCCCCTATCCCTAATCAAACCTCTAGAACTCACACCCCC
247 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
3463678 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
312 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
3463743 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
377 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * *
3463808 CCAAAAAAAAACACAAGGATCACGTCTACCACGTTTGGGGCCAAAACTCCTTTCGAAAGAATTTT
442 CC-AAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTACTTTCCAAAAAATTTT
3463873 AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCAT
505 AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
3463938 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTTACAAGCCATAAAAATGGCATTGG
570 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA-ATTTACAAGCCATAAAAATGGCATTGG
* *
3464003 TATGCAAGAAATATGAAGATGTGCCTAAACCCCACCTATCCACCCTAACGATCCACGGCTTGCAC
634 CATG-AAGAAATATGAAGATGTGCCTAAA-CCCACCTA-CCACCCTATCGATCCACGGCTTGCAC
*
3464068 ACTCC-GTCCTCTCTGGTCGGCAC-TAGTGCCCG-C
696 A-TCCTGT-CTCTCTGG-CCG-ACGTAGTGCCCGCC
* *
3464101 C-CCCGCCCGCTCATTTCGTCGGTTGGCTTAGGGATACGGAGTTCATTCCCAGTCTAAG
1 CGCCCGTCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
3464159 ATTAGATCGG
Statistics
Matches: 1332, Mismatches: 130, Indels: 100
0.85 0.08 0.06
Matches are distributed among these distances:
712 91 0.07
713 4 0.00
714 1 0.00
715 3 0.00
719 5 0.00
720 2 0.00
722 214 0.16
723 181 0.14
724 40 0.03
725 24 0.02
726 10 0.01
727 65 0.05
728 22 0.02
729 29 0.02
730 265 0.20
731 216 0.16
732 3 0.00
733 1 0.00
735 3 0.00
737 97 0.07
738 51 0.04
742 1 0.00
744 1 0.00
745 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (727 bp):
CGCCCGTCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGC
ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCCGAGAACCTGACCGACGGTATTG
GGGTTCCCGATTGAGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
AGGATCACGTCTACCAAGTTTGGGCCAAAACTACTTTCCAAAAAATTTTAAAAAATCTCGAACCG
CAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCTGTCTCTCTGGCCGAC
GTAGTGCCCGCC
Found at i:3466049 original size:26 final size:26
Alignment explanation
Indices: 3466013--3466065 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3466003 GTTGACTTAG
*
3466013 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3466039 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3466065 G
1 G
3466066 ATTAGAACGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:3467620 original size:26 final size:26
Alignment explanation
Indices: 3467583--3467651 Score: 129
Period size: 26 Copynumber: 2.7 Consensus size: 26
3467573 ATTGGCTTAG
*
3467583 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3467609 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3467635 GCATACGGAGTTCATTC
1 GCATACGGAGTTCATTC
3467652 TCTCTGGCTG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3467738 original size:26 final size:26
Alignment explanation
Indices: 3467708--3467760 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3467698 GTTGGTTTAG
3467708 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
3467734 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3467760 G
1 G
3467761 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:3467747 original size:125 final size:125
Alignment explanation
Indices: 3467525--3467760 Score: 366
Period size: 125 Copynumber: 1.9 Consensus size: 125
3467515 TACGCACCCG
* * * *
3467525 TCTCTCTGGTCGACGTAGTGCCCGCTCGCCCGCCCACTTGTTTCGTCGATTGGCTTAGGCATACG
1 TCTCTCTGGTCGACGTAGTGCCCACCCGCCCGCCCACTCGTTTCATCGATTGGCTTAGGCATACG
*
3467590 AAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
66 AAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * *
3467650 TCTCTCTGG-CTGACGTAGTGCTCACCCGCCCGCCCGCTCGTTTCATCGGTTGGTTTAGGCATAC
1 TCTCTCTGGTC-GACGTAGTGCCCACCCGCCCGCCCACTCGTTTCATCGATTGGCTTAGGCATAC
*
3467714 GGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAG
65 GAAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAG
3467761 ATCGGACCGG
Statistics
Matches: 100, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
124 1 0.01
125 99 0.99
ACGTcount: A:0.19, C:0.30, G:0.22, T:0.29
Consensus pattern (125 bp):
TCTCTCTGGTCGACGTAGTGCCCACCCGCCCGCCCACTCGTTTCATCGATTGGCTTAGGCATACG
AAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
Found at i:3468026 original size:126 final size:126
Alignment explanation
Indices: 3467801--3468051 Score: 412
Period size: 126 Copynumber: 2.0 Consensus size: 126
3467791 ATGCTACGCT
* * **
3467801 CGGGCATGTGCTGGAACCATATTTTTCTTCACCAGGGCACCATCTTCGGAGAACTTGATCGGTGG
1 CGGGCATGTGCTGGAACCACACTTTTCTTCACCAGGGCACCATCGCCGGAGAACTTGATCGGTGG
3467866 CATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGGTGTGCGCACATGATGTATGATGGATA
66 CATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGGTGTGCGCACATGATGTATGATGGATA
** *
3467927 CGGGCATGTGCTGGTGCCACACTTTTCTTCACCGGGGCACCATCGCCGGAGAACTTGATCGGTGG
1 CGGGCATGTGCTGGAACCACACTTTTCTTCACCAGGGCACCATCGCCGGAGAACTTGATCGGTGG
* * *
3467992 CATTGGGGTTCTGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTATGATGGAT
66 CATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGGTGTGCGCACATGATGTATGATGGAT
3468052 GCTAGTACTT
Statistics
Matches: 115, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
126 115 1.00
ACGTcount: A:0.18, C:0.22, G:0.37, T:0.24
Consensus pattern (126 bp):
CGGGCATGTGCTGGAACCACACTTTTCTTCACCAGGGCACCATCGCCGGAGAACTTGATCGGTGG
CATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGGTGTGCGCACATGATGTATGATGGATA
Found at i:3469683 original size:26 final size:26
Alignment explanation
Indices: 3469647--3469699 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3469637 GTTGACTTAG
3469647 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
3469673 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3469699 G
1 G
3469700 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:3470578 original size:26 final size:26
Alignment explanation
Indices: 3470548--3470600 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3470538 GTTGACTTAG
3470548 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3470574 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3470600 G
1 G
3470601 ATCAGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3471236 original size:904 final size:900
Alignment explanation
Indices: 3468906--3472211 Score: 4640
Period size: 904 Copynumber: 3.7 Consensus size: 900
3468896 GCACCATCGT
* * * * *
3468906 CCTGACCGACGGCATTGGGGTTCCAGCGATCG-GGGGGGC-AGGGGGTGTGCGTACATGATGTGC
1 CCTGACCGACGGCATTAGGGTTCCGGCGATCGCGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
** *
3468969 GATGGGTGCTGGTACTTGTTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACACACA
66 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
*
3469034 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAATG
131 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
3469099 GGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGT
196 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGT
* * *
3469164 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAACA
260 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
3469229 TTTTAAAAAATCCCGAACCGCACAAAGTTTCAAAAATCATGAAAAATGGAAAACGAGTCGTCTCG
325 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
3469294 CAATGAAACTTCACGTGAAGGCTTACAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
390 CCATGAAACTTCACGTGAAGGCTTA-AGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
3469359 TGGCATGCAGAAATAAT-AAGATGTGCCTAAACTCACCAACCACCCGATCGATGCACGGCTTGCG
454 TGGCACGCAGAAAT-ATGAAGATGTGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTGCG
* * * *
3469423 CATCCAGTC-CTCTGGTCGGTGTAGTGCCCGCCCGCCCGTCCGCCCGCTCATTT--T-GGTTGGC
518 CATCCAGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * *
3469484 TTAGGCATACGGAGTTCGTTCCCAGTCTAAGATCGGACCAGA-TCGAGGGTTTCGACAGTAGGAT
583 TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAGCAGGAT
* * * * * *
3469548 TGGCAGCAC-CTAGAGGGGGACCCAATCAATCCCCAGCTTCCGCATCTTGCCCCTCTGGCCGGCT
647 CGGCAGCACGC-AGA-GGGGACCCGATCGATCCCCAGCTTGCACATCTCGCCCCTCTGGCCGGCT
* * *
3469612 GACCGCCCGCACGCTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCAT
710 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
3469677 ATGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCAAGGGTTACGACAGCACATGCTAGGCTCG
775 ATGGAGTTCATTCCCAGTCTAAGATC-GATTGGACCAAGGGTTACGACAGCACATGCTAGGCTCG
*
3469742 GGCATGTGCTGGTGTCACTTTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAA
839 GGCATGTGCTGGTGTCACTTTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAA
* * *
3469804 CCTGATCGACGGCATTAGGGTTCCGACGATC-CGGGGGGCC-GGGGGGTCTGCGCACATGATGTG
1 CCTGACCGACGGCATTAGGGTTCCGGCGATCGC-GGGGGCCGGGGGGGTGTGCGCACATGATGTG
**
3469867 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA-CCCTCATCAAACCTCGGGAACTCAC
65 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
*
3469931 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAAAT
130 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
3469996 GGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTTTTTG
195 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTG
* ** *
3470061 TGCATGCCAA-TAAAATACAAGGATCACGTCTACCAAGTTTGGGGATAAAAATCCTTCCGAAAAA
259 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
3470125 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTT
324 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
3470190 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTGACAAGCCATAAAAATGGCA
389 GCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
3470255 TTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACTCGATCGATCCACGACTTGCG
453 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTGCG
* *
3470320 TC-TCCAGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGG
518 -CATCCAGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* *
3470384 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGGGGGTTGCGGTAGCAGGAT
582 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGAT
* *
3470449 CGGCAGCACGCAGAGAGGGACCCGGTCGATCCCCAGCTTGCACATCTCACCCCTCTGGCCGGCTG
647 CGGCAGCACGCAGAG-GGGACCCGATCGATCCCCAGCTTGCACATCTCGCCCCTCTGGCCGGCTG
* *
3470514 AGCGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
711 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
*
3470579 TGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCAAGGGTTACGGCAGCACATGCTAGGCTCGG
776 TGGAGTTCATTCCCAGTCTAAGATC-GATTGGACCAAGGGTTACGACAGCACATGCTAGGCTCGG
*
3470644 GCTTGTGCTGGTGTCACTTTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAA
840 GCATGTGCTGGTGTCACTTTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAA
* * * *
3470705 CCTGACCGATGGCATTAAGGTTTCGGTGATCGCGGGGGCCGGCGGGGGTGTGCGCACATGATGTG
1 CCTGACCGACGGCATTAGGGTTCCGGCGATCGCGGGGGCCGG-GGGGGTGTGCGCACATGATGTG
*
3470770 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
65 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * ** * *
3470835 ACCCCATAAAATTGCATTCGAGATCTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
130 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
3470900 GGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTGTAGCTGAATTTTTTTT
195 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGT
* * * *
3470965 GCATGCCAACAAAAATACAAGGATCATGTTTACCAAGTTTGGGGTCAAAACTCCTTCCAAAAAAA
260 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* ** *
3471030 TTTTAAAAAATCCCGAACGGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTG
325 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
3471095 CCATGAAACTTCACGTTAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCAT
390 CCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
3471160 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
454 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTGCGC
* * ** * * * * *
3471225 ATCCCGTCTCTCTGGCCGGCATAGTGCTTGCCCGCCCACTCGTCCGCTCGTGTCGTTGGTTGGCT
519 ATCCAGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * *
3471290 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCG
584 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCG
* *
3471355 GCAGCACGCAGAGGGGACCCGATCGA-CCCCAAGCTTGCCCATCCCGCCCCTCTGGCCGGCTGAG
649 GCAGCACGCAGAGGGGACCCGATCGATCCCC-AGCTTGCACATCTCGCCCCTCTGGCCGGCTGAG
* * *
3471419 CGCCCGCACGCTCGTTTCGTGGTTTGGCTTAGGCATACGGAGTTCATTCCCAG--T---C-TA--
713 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
* * * *
3471476 -AG---A-T--C-G-----GA-C---CGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
778 GAGTTCATTCCCAGTCTAAGATCGATTGGACCAAGGGTTACGACAGCACATGCTAGGCTCGGGCA
* ** * * * * * * *
3471524 TGTGCTGGTGCCACAGTTTTCTTTGCCGGGGCACCAACGCCGAAACATCCCCGGAGAA
843 TGTGCTGGTGTCACTTTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAA
* * * * * *
3471582 CCTTACCGGCGGCATTGGGGTTCCAGCGATCG-GGGGAGCTGGGGGGGGTGTGTGCACATGATGT
1 CCTGACCGACGGCATTAGGGTTCCGGCGATCGCGGGG-GC-CGGGGGGGTGTGCGCACATGATGT
* *
3471646 GCGATGGGTGCTGGTA-TTGGCCCTTATATTGGCCCCTTATCCCGCATCAAACCTCAAGAACTCA
64 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* *
3471710 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGGCAGTAGCCATTAAAGTGTCTGAAA
129 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
3471775 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTA
194 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT-
* * * *
3471840 GAGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAA-TCCTACTGAAAA
258 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
3471904 AATTTTAAAAAA-CTCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAGTAGAAAATGAGTCGTC
323 AATTTTAAAAAATC-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
3471968 TTGCCATTAAACTTCACTTGAAGGCTT--GGACCATTGTATGAATTTACAA-CAGATAAAAATGG
387 TTGCCATGAAACTTCACGTGAAGGCTTAAGGACCATTGTATGAATTTACAAGC-CATAAAAATGG
* * * *
3472030 CATTGGCACACAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTG
451 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTG
* * *
3472095 CGCATCCCA-TCTCTCTGGCAGGCGTAGTGCCCGCCCG-TCGCCCGCTCGCTCGTTTCGTCGGTT
516 CGCAT-CCAGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * *
3472158 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTT
580 GGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
3472212 ACGACAGCTC
Statistics
Matches: 2170, Mismatches: 213, Indels: 76
0.88 0.09 0.03
Matches are distributed among these distances:
872 71 0.03
873 121 0.06
874 2 0.00
875 1 0.00
876 257 0.12
877 189 0.09
878 2 0.00
881 1 0.00
882 2 0.00
887 1 0.00
888 1 0.00
890 1 0.00
891 1 0.00
894 2 0.00
896 2 0.00
897 233 0.11
898 226 0.10
899 63 0.03
900 2 0.00
901 329 0.15
902 8 0.00
903 167 0.08
904 488 0.22
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
CCTGACCGACGGCATTAGGGTTCCGGCGATCGCGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTGCGCAT
CCAGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
GGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGC
AGCACGCAGAGGGGACCCGATCGATCCCCAGCTTGCACATCTCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAG
TTCATTCCCAGTCTAAGATCGATTGGACCAAGGGTTACGACAGCACATGCTAGGCTCGGGCATGT
GCTGGTGTCACTTTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAA
Found at i:3476448 original size:26 final size:26
Alignment explanation
Indices: 3476418--3476473 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
3476408 TGGTTTGACT
* *
3476418 TAAGCGTACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
*
3476444 TAAGCATACAGAGTTCATTTCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
3476470 TAAG
1 TAAG
3476474 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:3476801 original size:896 final size:896
Alignment explanation
Indices: 3474275--3478063 Score: 4947
Period size: 896 Copynumber: 4.2 Consensus size: 896
3474265 TTCAAATGGT
3474275 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
1 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
3474340 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCA
66 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCA
* *
3474405 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
131 TCCCGTCTCTCTGGCCGGCATAGT----GCCCGCCCG--C-CCC-CTCGTTTCGTCGGTTGGCTT
* * * * *
3474470 AGGCATACGAAGTTCATTCCTAGTCTAAGATCGGACCGGATC-GAGGGTTACGGTAGCAGGATCG
188 AGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGAACTGAGGGTTACAGCAGCAGGATCG
* * * *
3474534 GCAGCACGTAGAGTGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAG
253 GCAGCACGCAGAGTGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * * * * *
3474599 TGCTCACACGCTCATTTCATGGGTTGACTTAGGCATACCGAGTTCATTCCCAGTCTAAGCATGCG
318 CGCCCACACGCTCGTTTCATGGTTTGACTTAAGCGTA-GGAGTTCATTCCCAGTCTAAGCATACG
* * * ** * * * *
3474664 GAGTTCATTCCAAATCTAAGATCGGACTGGACTGAGGGCTGCGGCAACACATGCTGGGCTCAGGC
382 GAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGCAGCAACAAATGCTGGGCTCAGGC
* *
3474729 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGTACCATCACCGGAGCATCATCGGAGAACCTGAC
447 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGAC
* * *
3474794 AGACGGCATTAGGG-TTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
512 CGGCGGCATT-GGGTTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
*
3474858 TGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTGAGAACTCACACCCCT
576 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTGAGAACTCACACCCCT
3474923 TTAAAGAGAATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
641 TTAAAGAGAATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
3474988 ACTTTTTTCAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATG
706 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATC
* *
3475053 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCTG-AAAAATTTTA
771 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTCTGAAAAAATTTTA
* * * *
3475117 AAAAATCTCGAACTGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
836 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
3475178 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATT
1 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
3475243 GGCACGTAGAAATATGAAGATGTGCCTCAACCCACCAACCACCCTATCGATCCATGGCTTGCACA
66 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCA
* * *
3475308 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
131 TCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCCCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * *** *
3475373 GGAGTTCATTCCCAGTCTAAGA-GAGGACCGGACCT-AGGGTTGTGGTAGCAGGATCGGC-GCAC
196 GAAGTTCATTCCCAGTCTAAGATCA-GACCGGAACTGAGGGTTACAGCAGCAGGATCGGCAGCAC
* * * * **
3475435 GCAGAGGGGGACCCGATCGATCACCAGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGT
260 GCAGAGTGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCAC
* * * * *
3475500 ACGTTTGTTTCATGGTTTGACTTAGGTGTTAGGAGTTCATTCACAGTCTAAGCATACGGAGTTCA
325 ACGCTCGTTTCATGGTTTGACTTAAGCG-TAGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* ** * *
3475565 TTCCCAGTCTAAGATCGGACTGGACAAAGGGTTGCTA-CAGCAAATGCTGGGCTC-GAGCATGTG
389 TTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGC-AGCAACAAATGCTGGGCTCAG-GCATGTG
* * * * * *
3475628 CTGGTGCCGTATTTTTCTTCATCGGGGTACCATCATCGAAGCATC-ACAGGAGAACCTGACCGGC
452 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTC-GGAGAACCTGACCGGC
* *
3475692 GGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCCG
516 GGCATTGGGTTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
3475757 GTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCACTGAGAACTCACACCCCTTTAAA
581 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTGAGAACTCACACCCCTTTAAA
3475822 GAGAATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
646 GAGAATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
3475887 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATTTTTTTATGCATCCCAAC
711 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATCCCAAC
* ** * *
3475952 AAAAACACAAGGATCACGTCTACCGTGGTTGGAGCCAAAACTCCGTCTGAAAAAATTTTAAAAAA
776 AAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
* **
3476017 TCCCAAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
841 TCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
3476073 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATT
1 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
3476138 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTTCGCA
66 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCA
* *
3476203 TCCCGTCTCTCTGGCCGGCATAGTGCCCGTCTGCCCCCTCGTTTCGTCGGTTGGCTTAGGCATAC
131 TCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCCCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * *
3476268 GAAGTTCATTCCCAGTCTAAGATCAGATC-GAACTGAGGGTTACAGCAGCAAGATCGACAGCAAG
196 GAAGTTCATTCCCAGTCTAAGATCAGACCGGAACTGAGGGTTACAGCAGCAGGATCGGCAGCACG
* * ** *
3476332 CAGAGTGGGACCCTATCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCAAGCTGAGCGCCAACA
261 CAGAGTGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACA
*
3476397 CGCTCGTTTCATGGTTTGACTTAAGCGTACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
326 CGCTCGTTTCATGGTTTGACTTAAGCGTA-GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * *
3476462 TTCCAGTCTAAGATCAGACCAGACAGAGGGTTGCAGCAACAAATGTTGGGCTC-GAGCTTGTACT
390 TCCCAGTCTAAGATCAGACCAGACAGAGGGTTGCAGCAACAAATGCTGGGCTCAG-GCATGTGCT
* * * ** * * * * *
3476526 TGTGCCGTATTTTTTTTCGTTAGGGCACCATCGCCAGAGCATCGTCGGAGAACCTAACTGGCAGC
454 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGC
* * * *
3476591 ATTGTGGTTTC-GATGATCGTGTGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
519 ATTG-GGTTTCTGACGATCG-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
3476655 TACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTC-CAGAACTCACACCCCTTTAAAG
582 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTGAGAACTCACACCCCTTTAAAG
* *
3476719 AGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
647 AGAATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
3476784 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAACCTAATA
712 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATCCCAACA
* * * *
3476849 AAAATACAAGGATCACATCTACCATGTTTGGGGCCAAAACTCCTT-TCGAAAAAATTTTAACAAA
777 AAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAA
* * ** *
3476913 TCTCGAACCGCAAAACGTTTCAAAAATTATGAAAAATAGAAAACGAGTCATCTTGC
841 TCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
3476969 CATGAAACTTCACGTGAAGGCTTAAAGGACCATTATATGAATTTACAAGCCATAAAAATGGCATT
1 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
3477034 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGCA
66 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCA
* * *
3477099 TCCAGTTTCTCTGGTCGGCATAGTGCCCGCCCGGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
131 TCCCGTCTCTCTGGCCGGCATAGTGCCCGCCC-G-C-CCC-CTCGTTTCGTCGGTTGGCTTAGGC
* * * * * * *
3477164 ATACGGAGTTCATTCTCAGTCTAAGATTAGACTGG-ACCGAGGGTTGCAGCAGTAGGATC-GCTA
192 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGAACTGAGGGTTACAGCAGCAGGATCGGC-A
** * * * * *
3477227 GCACGTGGAG-GGGAACCCG-GCTGATCCCCGACTTGCGCATTCTGCCCCTCTGGCCGGTTGAGC
256 GCACGCAGAGTGGG-ACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
3477290 GCCCGCATGCTCGTTTC-------G---T-AG-GT-TGA---C-TT---AG-----GCATACGGA
319 GCCCACACGCTCGTTTCATGGTTTGACTTAAGCGTAGGAGTTCATTCCCAGTCTAAGCATACGGA
* * ** * * *
3477330 GTTTATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCAGGCTT
384 GTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGCAGCAACAAATGCTGGGCTCAGGCAT
* * * * *
3477395 GTGCTAGTGCCACATTTTTCTTCTTCGGGGCACCATCACCGGAGCATCGCCGCAGAACCTGACCG
449 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCG
* * ** *
3477460 GCGGCATTGCGG-TTCTGGCGATCGGGGGAGCCAAGGGGTGT--GCACATGATGTGGGATGGGTG
514 GCGGCATTG-GGTTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
3477522 CTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-TGAGAACTCACACCCCCTT
578 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTGAGAACTCACACCCCTTT
* * * * * *
3477586 AAAGAGCATTAGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTTTCTGAAATGGGGAGAC
643 AAAGAGAATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
3477651 TTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGTTGAATTTTTTTGTGCATGCC
708 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATCCC
* * **
3477716 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGCA-CTAAAACTCCTTCCAAAAAAATTTTAA
773 AACAAAAATACAAGGATCACGTCTACCAAGTTTGG-AGCCAAAACTCCTTCTGAAAAAATTTTAA
* ** * *
3477780 AAAATCCCGAACCGCAGAAAGTTTTGAAAATCGTAAAAAATAGAAAATGAGTCGTCTTGC
837 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * *
3477840 CATGAAACTGCACGTGAAGGCTTAAGGGACCAGTGTATCAATTTACAAGCCATAAAAATGGCATT
1 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * *
3477905 GGCATGCAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGGCTTGCACA
66 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCA
* ** *** * *
3477970 TCCCGTCTCTCTAGTTGGCATAGTGCCCATTCGCCCGCTCGTTTCGTCGGCTGGCTTAGGCATAC
131 TCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCCCTCGTTTCGTCGGTTGGCTTAGGCATAC
* *
3478035 GAAGTTCATTCCCAATCTAAGATCGGACC
196 GAAGTTCATTCCCAGTCTAAGATCAGACC
3478064 AGACCAAGGG
Statistics
Matches: 2556, Mismatches: 300, Indels: 96
0.87 0.10 0.03
Matches are distributed among these distances:
867 50 0.02
868 2 0.00
869 1 0.00
870 1 0.00
871 445 0.17
873 14 0.01
874 130 0.05
875 1 0.00
879 2 0.00
882 2 0.00
883 1 0.00
886 2 0.00
888 2 0.00
889 2 0.00
890 1 0.00
893 6 0.00
894 511 0.20
895 373 0.15
896 626 0.24
897 87 0.03
898 1 0.00
899 17 0.01
900 132 0.05
901 1 0.00
903 146 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCCCTCGTTTCGTCGGTTGGCTTAGGCATAC
GAAGTTCATTCCCAGTCTAAGATCAGACCGGAACTGAGGGTTACAGCAGCAGGATCGGCAGCACG
CAGAGTGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACA
CGCTCGTTTCATGGTTTGACTTAAGCGTAGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCAGACAGAGGGTTGCAGCAACAAATGCTGGGCTCAGGCATGTGCTGG
TGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCAT
TGGGTTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTGAGAACTCACACCCCTTTAAAGAGAA
TTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATCCCAACAAAAA
TACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCG
AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
Found at i:3478654 original size:708 final size:708
Alignment explanation
Indices: 3477298--3478681 Score: 2108
Period size: 708 Copynumber: 2.0 Consensus size: 708
3477288 GCGCCCGCAT
* * * * *
3477298 GCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCAGACCGA
1 GCTCGTTTCGTAGGCTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACCAA
* * *
3477363 GGGTTGTGGCAGCACATGCTGGGCTCAGGCTTGTGCTAGTGCCACATTTTTCTTCTTCGGGGCAC
66 GGGTTGTGGCAGCACATGCTGGGCTCAGGCATGCGCTAGTGCCACATTTTTCTTCGTCGGGGCAC
* * * *
3477428 CATCACCGGAGCATCGCCGCAGAACCTGACCGGCGGCATTGCGGTTCTGGCGATCGGGGGAGCCA
131 CATCACCGGAGCATCGCCGCAGAACCTGACCGACGGCATTGCGGTTCCGACGATCAGGGGAGCCA
*
3477493 AGGGGTGTGCACATGATGTGGGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTC
196 AGGGGTGTGCACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTC
** * *
3477558 ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTAGAGATTTTACAGGTTTGCTGCTAGTA
261 ATCAAACCTCAAGAACTCACACCCCCTTAAACAGCATTAGAGATTTTACAGGTTTGCTGCCAGTA
* *
3477623 GCCATTAAAGTTTCTGAAATGGGGAGACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAG
326 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAG
** **
3477688 TTTTTAGTTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGCA
391 TTTTTAACTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAAATCTACCAAGTTTGGCA
* * * * *
3477753 CTAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAGAAAGTTTTGAAAATCGTAAAA
456 CCAAAACACCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCATAAAA
* * * *
3477818 AATAGAAAATGAGTCGTCTTGCCATGAAACTGCACGTGAAGGCTTAAGGGACCAGTGTATCAATT
521 AATAAAAAACGAGTCATCTTGCCATGAAACTGCACGTGAAGGCTTAAAGGACCAGTGTATCAATT
* * *
3477883 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCATAAACCCACCTACCACC
586 TACAAGCCATAAAAATGGCATTGGAAAGCAAAAATATGAAGATGTGCATAAACCCACCTACCACC
3477948 CTATCGATCCACGGCTTGCACATCCCGTCTCTCTAGTTGGCATAGTGCCCATTCGCCC
651 CTATCGATCCACGGCTTGCACATCCCGTCTCTCTAGTTGGCATAGTGCCCATTCGCCC
* * *
3478006 GCTCGTTTCGTCGGCTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATCGGACCAGACCAA
1 GCTCGTTTCGTAGGCTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACCAA
* * *
3478071 GGGTTGTGGCAGCACATGCTGGGCTCGGGCATGCGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
66 GGGTTGTGGCAGCACATGCTGGGCTCAGGCATGCGCTAGTGCCACATTTTTCTTCGTCGGGGCAC
* * * * * *
3478136 CTTCGCTGGAGCATCGTCGGAGAACCTGACCGACGGCGTTG-GGCTTCCGACGAT-AGGGG-GCC
131 CATCACCGGAGCATCGCCGCAGAACCTGACCGACGGCATTGCGG-TTCCGACGATCAGGGGAGCC
** *
3478198 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
195 AAGGGGTGT--GCACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCC
* **
3478263 CTCATCAAACCTCAAGAACTCACACCCCCTTAAACTGCATTTTAGATTTTACAGGTTTGCTGCCA
258 CTCATCAAACCTCAAGAACTCACACCCCCTTAAACAGCATTAGAGATTTTACAGGTTTGCTGCCA
*
3478328 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
323 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATC
* * *
3478393 GAGTTTTTAACTGAATTTTTTTGTGCATGCCAACAAAAATATAAGGATCAAATGTACCAAGTTTG
388 GAGTTTTTAACTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAAATCTACCAAGTTTG
** * ** *
3478458 GGGCCAAAACACCTTCCAAAAATATTTTAAAAAATCCCAAACCTTAAAAAGTTTTGAAAATCATG
453 GCACCAAAACACCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCATA
* * *
3478523 AAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGA
518 AAAAATAAAAAACGAGTCATCTTGCCATGAAACTGCACGTGAAGGCTTAAAGGACCAGTGTATCA
* *
3478588 ATTTACAAGCCATAAAAATGGCATTGGAAAGCAAAAATATGAAGATGTGCCTAAACCCGCCTACC
583 ATTTACAAGCCATAAAAATGGCATTGGAAAGCAAAAATATGAAGATGTGCATAAACCCACCTACC
3478653 ACCCTATCGATCCACGGCTTGCACATCCC
648 ACCCTATCGATCCACGGCTTGCACATCCC
3478682 ATCTTTCTGG
Statistics
Matches: 605, Mismatches: 68, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
706 10 0.02
707 6 0.01
708 589 0.97
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (708 bp):
GCTCGTTTCGTAGGCTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACCAA
GGGTTGTGGCAGCACATGCTGGGCTCAGGCATGCGCTAGTGCCACATTTTTCTTCGTCGGGGCAC
CATCACCGGAGCATCGCCGCAGAACCTGACCGACGGCATTGCGGTTCCGACGATCAGGGGAGCCA
AGGGGTGTGCACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCAAGAACTCACACCCCCTTAAACAGCATTAGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAG
TTTTTAACTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAAATCTACCAAGTTTGGCA
CCAAAACACCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCATAAAA
AATAAAAAACGAGTCATCTTGCCATGAAACTGCACGTGAAGGCTTAAAGGACCAGTGTATCAATT
TACAAGCCATAAAAATGGCATTGGAAAGCAAAAATATGAAGATGTGCATAAACCCACCTACCACC
CTATCGATCCACGGCTTGCACATCCCGTCTCTCTAGTTGGCATAGTGCCCATTCGCCC
Found at i:3478940 original size:26 final size:26
Alignment explanation
Indices: 3478904--3478953 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
3478894 GTTGACTTAG
3478904 GCATACGGAGTTCATTCCCAGTTTGA
1 GCATACGGAGTTCATTCCCAGTTTGA
3478930 GCATACGGAGTTCATTCCCAGTTT
1 GCATACGGAGTTCATTCCCAGTTT
3478954 AAGATTGGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTTTGA
Found at i:3481330 original size:26 final size:26
Alignment explanation
Indices: 3481294--3481346 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3481284 GTTGACTTAG
3481294 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
3481320 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3481346 G
1 G
3481347 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:3482211 original size:26 final size:26
Alignment explanation
Indices: 3482182--3482234 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3482172 GTTGACTTAG
*
3482182 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
3482208 GCATACAGAGTTCATTCCCGGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3482234 G
1 G
3482235 ATCCGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3482714 original size:900 final size:884
Alignment explanation
Indices: 3480429--3482894 Score: 3358
Period size: 900 Copynumber: 2.8 Consensus size: 884
3480419 ATTGGCTTAG
* * * *
3480429 GCATACGGACTTCATTCCCAGTCTAAGATCGGGCCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCACATGCTGGG
* *
3480494 CTCGGGCATGTGCTGGTGCCGTAATTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAC-CGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCGTCGGAGCA-C-CGC-GAG
* * * * * * *
3480558 AACCTGACCGGCGGCATTGGGGTTTCAATGATCGGGGGGCCGAGGGGTGTGCGCACATGATGTGC
127 AACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGTCGGGGGGGTGTGCGCACATGATGTGC
* * * *
3480623 GATGGGTGCCGGTACGTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACA
192 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
3480688 CCCCCTTCAAGGGCATTTGAG-TGTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATTTGAAAT
257 CCCCCTTAAAGAGCATTTGAGAT-TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
3480752 AGGGACACTTTTTTCCAATGGTCCCAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTT
* *
3480817 TACATGCCAACAAAAAATACAAGGATCATGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAA
386 TACATGCCAAC-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
3480882 AATTTTAGAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
450 AATTTTAAAAAATCCCAAACCGAAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
3480947 TGCCATGAAACTTCACATGAAGGCTTAAGGGCCCATTGTATGAATTTACAAGCGATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
3481012 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
580 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
* * * * *
3481077 GCATCCCGTCACTCTGGCCGACGTAATGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
645 -CATCCCGTCTCTCTGGCCGACGTAATGCCCGCCCGCTCATTTCATCGATTGCCTTAGGCATACG
* * * **
3481142 GAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTACGGTAGCAAGATTGGTAGCACGCA
709 AAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTACGATAGCAAGATCGACAGCACGCA
* * * *
3481207 GAGGGGGACCCGGTCGATCCCCGGCTTACGCGTCCCGCCCCTCTGGCCGGCTGAGCATCCGCACG
774 GAGGGGGACCCGCTCGATCCCCAGCTTACGCGTCCCG--CCTCTGGCCGACTGAGCACCCGCACG
3481272 ATCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
837 ATCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* * ** *
3481320 GCATACTGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTAAGGCAGCACATTCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCACATGCTGGG
* *
3481385 CTCGGGCATTTGTTGGTGCCGCATTTTTCTT-TGCTGGGGCACCA---TC---G--CCG-GAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCT-C-GGGGCACCATCGTCGGAGCACCGCGAGAA
*
3481440 CCTGACCGGCGGCATTAGGGTTCCGACGATTGGGGGGTCGGAGGGGGTGTGCGCACATGATGTG-
129 CCTGACCGGCGGCATTAGGGTTCCGACGA-TCGGGGGTCGG-GGGGGTGTGCGCACATGATGTGC
*
3481504 AGATGGGTG-TGGGTACTTGGCCCTTATACT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCA
192 A-ATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
3481567 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
255 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
3481632 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTATTTT
320 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT-TTTT
* * *
3481697 TTTACGTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTGCTTCCGAAA
384 TTTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
3481762 AAATTTTAAAAAATCTCGAACCGCAAAAA-TTTCGAAAATCATGAATAATAGAAAACGAGTCGTC
449 AAATTTTAAAAAATCCCAAACCGAAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
3481826 TTGCCATGAAACTTCACGTGAAAGCTTTAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
514 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
3481891 TATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
579 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* *
3481956 CTCATCCCGTCTCTCTGGTCGACGTAGTGCCTGCCCGCACGTCCGACCGCTCATTTCATCGATTG
644 C-CATCCCGTCTCTCTGGCCGACGTA----ATG--C-C-CG--C--CCGCTCATTTCATCGATTG
* * * * * *
3482021 CCTTTGGTATACGAAGTTCATTCCTAGTCTAAGATCAGACCAGACT-GAGGGTTACGATAGTAGG
696 CCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACC-GAATCGAGGGTTACGATAGCAAG
* *
3482085 ATCGACAGCACGTAGAGGGGGACTCGACT-GATCCCCAGCTTACG-GTTCCCG-C-CTGGCCGAC
760 ATCGACAGCACGCAGAGGGGGACCCG-CTCGATCCCCAGCTTACGCG-TCCCGCCTCTGGCCGAC
* * * * *
3482146 TGAGCGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
823 TGAGCACCCGCACGATCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* * * *
3482208 GCATACAGAGTTCATTCCCGGTCTAAGATCCGACCGGAGCC-AGGGTTGTGGTAGCACATGCTAG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CCAAGGGTTGTGGCAGCACATGCTGG
*
3482272 GCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCACCGTCGAAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCGTCGGAGCACCG-CG-AG
* *
3482337 AACCTGACCGACGGCATTAGGGTTCCGACGATCAGGGGGTCGGGGGAGGTGTACGCACATGATGT
127 AACCTGACCGGCGGCATTAGGGTTCCGACGATC-GGGGGTCGGGGG-GGTGTGCGCACATGATGT
*
3482402 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
190 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
3482467 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAA
255 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* ** *
3482532 TGGGGACA-TTTTTTGCAAATGGTCACAAAATCTTGTGCACTTCAATTTTTTAGCTGAATTTTTT
320 TGGGGACACTTTTTT-CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
*
3482596 TTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
384 TTTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
3482661 AAATTTTAAAAAATCCCAAATCGAAAAAAGTTTTGAAAATCATGAAGAATAGAAAATGAGTCATC
449 AAATTTTAAAAAATCCCAAACCGAAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
3482726 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCACTGTATGAATTTACAAGCCATAAAAATGG
514 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * ** * *
3482791 CATTGGCATGCAGAAATATGAAGATGTGCCGAATCCCACCTACCAAACTATCGGATCCATGGCTT
579 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC-GATCCACGACTT
* * ** *
3482856 GCGACTCCCGTCTCTCTGGCTGGTGTAGTGCCCGCCCGC
643 GCCA-TCCCGTCTCTCTGGCCGACGTAATGCCCGCCCGC
3482895 CCGCCTGCCT
Statistics
Matches: 1393, Mismatches: 135, Indels: 96
0.86 0.08 0.06
Matches are distributed among these distances:
880 208 0.15
881 230 0.17
882 62 0.04
884 2 0.00
885 1 0.00
886 1 0.00
887 1 0.00
888 158 0.11
889 9 0.01
890 3 0.00
891 97 0.07
892 107 0.08
893 6 0.00
894 2 0.00
895 1 0.00
896 3 0.00
897 2 0.00
898 5 0.00
899 180 0.13
900 285 0.20
901 30 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (884 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTCGGGGCACCATCGTCGGAGCACCGCGAGAACC
TGACCGGCGGCATTAGGGTTCCGACGATCGGGGGTCGGGGGGGTGTGCGCACATGATGTGCAATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTACAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
AAAAAATCCCAAACCGAAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCCATCCC
GTCTCTCTGGCCGACGTAATGCCCGCCCGCTCATTTCATCGATTGCCTTAGGCATACGAAGTTCA
TTCCCAGTCTAAGATCAGACCGAATCGAGGGTTACGATAGCAAGATCGACAGCACGCAGAGGGGG
ACCCGCTCGATCCCCAGCTTACGCGTCCCGCCTCTGGCCGACTGAGCACCCGCACGATCGTTTCG
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
Found at i:3483689 original size:26 final size:26
Alignment explanation
Indices: 3483653--3483702 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
3483643 CACTTAGGCT
3483653 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
*
3483679 TACGGAGTTCATTTCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
3483703 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:3484533 original size:26 final size:26
Alignment explanation
Indices: 3484497--3484546 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
3484487 TTGACTTAGT
*
3484497 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
3484523 CATACAGAGTTCATTCCCAGTCTA
1 CATACAGAGTTCATTCCCAGTCTA
3484547 GGATCGAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:3487097 original size:29 final size:29
Alignment explanation
Indices: 3487055--3487110 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
3487045 AAGATCAAAC
*
3487055 CAGATCGAGGGTTGCGGTAGTAGCATCGG
1 CAGACCGAGGGTTGCGGTAGTAGCATCGG
3487084 CAGACCGAGGGTTGCGGTAGTAGCATC
1 CAGACCGAGGGTTGCGGTAGTAGCATC
3487111 AACAGTACGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.21, C:0.20, G:0.39, T:0.20
Consensus pattern (29 bp):
CAGACCGAGGGTTGCGGTAGTAGCATCGG
Found at i:3488511 original size:906 final size:899
Alignment explanation
Indices: 3486311--3489033 Score: 3302
Period size: 906 Copynumber: 3.0 Consensus size: 899
3486301 TAAGCATGTG
* * * * **
3486311 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGCCTCACGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACC--GGGTTGCGGCAGCACATGCTGGGCTCGGGC
* *
3486376 ATGTGCTGGTGTCGCATTTTTCTTCA-CTGGGGCACCATTG-CCAGAGCATCGTCGGAGAACCTG
64 ATGTGCTGGTGCCGCATTTTTCTTCATC-GGGGCACCATTGTCGA-AGCATCGTCGGAGAACCTG
** * *
3486439 ACCGGTGGCATTGGGGTTTCGACGATCAGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
127 ACCGACGGCATTGGGGTTCCGACGATCGGA-GGGCC-GGGGGGTGTGCGCACATGATGTGCGATG
*
3486504 GGTGCTGGTACTTGGCCCTTATAATGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
190 GGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
3486569 CTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
255 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
3486634 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTGTCCAT
320 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * *
3486698 GCCAAAAAAAATAAAAGGATCACGTCCACTATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
385 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * * *
3486763 CAAAAATCCCCAA-CTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
450 AAAAAATCCCGAATC-GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCA
*
3486827 TGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
514 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
3486892 CATGCAAAAATATTAAGATGTGCCTAAACCCACCTACCACCCGATCTATCCACGGCTTGCGCATC
579 CATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGCGCATC
* * * * *
3486957 CCATCTCTCTGGCCGGCGTAGTG-CTCACCCGCTTG-CCCGCCCGCTCATTTCATCGGTT-GCTT
644 CCGTCTCTCTGGCCGGCGTAGTGCCT-GCCCGCTCGCCCCGCCCGCTCGTTT-GTCGGTTGGCTT
** *
3487019 AGGCATACAAAGTTCATTCCCAGTCTAAGATCAAACCAGA-TCGAGGGTTGCGGTAGTAGCATCG
707 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGC----G--GCA---
* * * *
3487083 GCAGACCGAGGGTTGCGGTAGTAGCATCAACAGTACGCAAAGGGGGACCCGACCGAT-CTCCAAC
762 GCA-A--GA----T----T-G--G------CAGCACGCAGAGGGGGACCCGATCGATCCT-CAGC
* * * *
3487147 TTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTTGTTTCGTGGGTTGACTTAGGCA
806 TTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCA
* *
3487212 TATGGAGTTTATTCCCAGTCTAAG-AT-C
871 TACGGAGTTCATTCCCAGTCTAAGCATAC
3487239 G-G---------A--C------CAGACC-GA--GGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * *
3487283 TTGCTTGTGCCGCATTTTTCTTCATCGGGGCACCATTGTCGAAGCATCGTCGGAGAATCTGACCG
66 GTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATTGTCGAAGCATCGTCGGAGAACCTGACCG
*
3487348 ACGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGCGGTATG-GCACATGATGTGCGAT-GG-G
131 ACGGCATTGGGGTTCCGACGATCGGA-GGGCCGGGG-GGTGTGCGCACATGATGTGCGATGGGTG
*
3487410 -T-G--C-TGG------TA------CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
194 CTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * * *
3487458 AAGAGCATTTGAAATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGGCACT
259 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
3487523 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCA
324 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
** ** ** *
3487588 ACAAAAATACAAGGATCACACCTACCAAGTTTGCAGCCAAAACTCCTTTTGAAAAATTTTTAAAA
389 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * * * *
3487653 AATACGGAATCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
454 AATCCCGAATCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
* * * *
3487718 CTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATGGCATTGGCACGT
519 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * * * * * *
3487783 AGAAATATGATGATGTGCCTAAACCAACCTACCACCCTATCGATCCACAGCTTGCGTATCCCGTT
584 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGCGCATCCCGTC
* * * * *
3487848 TCTCTGGTCGGCATAGTGCCTACCTGCTCGTCCGTCCGCCCGCTCGTTTGTTCGATTGGCTTAGG
649 TCTCTGGCCGGCGTAGTGCCTGCCCGCTCG-CC--CCGCCCGCTCGTTTG-TCGGTTGGCTTAGG
* * * *
3487913 CATACGGAGTTTATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCCGTAGCAAGATTGGCAA
710 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAAGATTGGCAG
* * * * *
3487978 CACGCAGAGGGGGACCCGGTCAATCCCCGGCTTGTGCATTCTGCCCCTCTGGCCGGCTGAGCGCC
775 CACGCAGAGGGGGACCCGATCGATCCTCAGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* *
3488043 CACACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATAC
840 CACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * *
3488103 GAAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAAGGTTACGGTAGCACATGCTGGGCTCGGG
1 G-AGTTCATTCCCAGTCTAAGATCAGACCGGACCG--GGTTGCGGCAGCACATGCTGGGCTCGGG
* *
3488168 CATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATTGTCGAAGCATCGTCGGAGAACCTGA
63 CATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATTGTCGAAGCATCGTCGGAGAACCTGA
*** * *
3488233 CCGACGATTTTGAGGTTCCGACGATTGGAGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
128 CCGACGGCATTGGGGTTCCGACGATCGGAGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
3488298 GCTGGTACTTGGCCCATATATTGGGCCCCTATCTCTCATCAAACCTTGAGAACTCACACCCCCTT
193 GCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
3488363 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACAC
258 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
3488428 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC
323 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
** *
3488493 AACAAAAATACAAGGATCACGTCTACCAAGTTTGCAGCCAAAACTCCTTCTGAAAAAATTTTAAA
388 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * * *
3488558 AAATGCCGAATCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCAAGAA
453 AAATCCCGAATCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
* *
3488623 ACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATGGCATTGGCATG
518 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
3488688 CAAAAATATGAAGATGTGCCTAAACCCACCTATCACCCGATCTATCCACGGCTTGCGCATCTCGT
583 CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGCGCATCCCGT
* *
3488753 CTCTCTGGCCGACGTAGTGCCTGCCCGCTCG-CCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCA
648 CTCTCTGGCCGGCGTAGTGCCTGCCCGCTCGCCCCGCCCGCTCGTTT-GTCGGTTGGCTTAGGCA
* * ** * * * *
3488817 TACGGAGTTCATTCCCAGTCTAATATCAGACCGGACCAAAGGTTGTGGCAACAGGATTGGCAGCA
712 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAAGATTGGCAGCA
* * * * * * *
3488882 CACAGAGAGGGACCCGATCGATCCTCGGCTTGCGCATTCTGCCCCTCTGGCCGACTGAGTGCCCA
777 CGCAGAGGGGGACCCGATCGATCCTCAGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCA
* * * *
3488947 GACGCTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTTATTCCCAGTCTGAGCATAC
842 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
*
3489005 GGAGTTTATTCCCAGTCTAAGATCAGACC
1 -GAGTTCATTCCCAGTCTAAGATCAGACC
3489034 AGATTGAGGG
Statistics
Matches: 1567, Mismatches: 166, Indels: 150
0.83 0.09 0.08
Matches are distributed among these distances:
862 105 0.07
863 3 0.00
864 2 0.00
866 1 0.00
868 1 0.00
870 1 0.00
871 1 0.00
875 2 0.00
879 2 0.00
881 1 0.00
882 3 0.00
883 6 0.00
884 2 0.00
885 146 0.09
886 271 0.17
887 28 0.02
888 113 0.07
889 1 0.00
890 19 0.01
891 52 0.03
892 1 0.00
893 1 0.00
894 3 0.00
897 3 0.00
898 1 0.00
900 3 0.00
901 1 0.00
902 218 0.14
903 4 0.00
904 21 0.01
905 116 0.07
906 424 0.27
909 2 0.00
910 5 0.00
916 1 0.00
918 1 0.00
927 1 0.00
928 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
GTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATTGTCGAAGCATCGTCGGAGAACCTGACCG
ACGGCATTGGGGTTCCGACGATCGGAGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
TCCCGAATCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAA
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGGCGTAGTGCCTGCCCGCTCGCCCCGCCCGCTCGTTTGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAAGATTGGCAGCACGCA
GAGGGGGACCCGATCGATCCTCAGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCACACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
Found at i:3489216 original size:26 final size:26
Alignment explanation
Indices: 3489140--3489218 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
3489130 GTTGACTTAG
*
3489140 GCATACGGAGTTCATTCCCAGTCTTA
1 GCATACGGAGTTCATTCCCAGTCTAA
3489166 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3489192 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3489218 G
1 G
3489219 ATCGGACCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3490232 original size:172 final size:173
Alignment explanation
Indices: 3489939--3490462 Score: 761
Period size: 172 Copynumber: 3.0 Consensus size: 173
3489929 AGCAAGATCT
* *
3489939 GTAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCTCCCCTCTGGCCGGCTGAG
1 GTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAG
* * * * *
3490004 CGCCCGC-CGTTCGTTTCGTGTGTTGACTTAGGCATACTGAGCTCATTCCTAGTCTAAGCATACG
66 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
*
3490068 AAGTGT-ATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTG
131 AAGT-TCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCG
* * *
3490111 GTAGCACGCAAAGGGGGACCCGATCGAT-CACGGCTTGCGCATCCCACCCCTCTGGCCGGCTAAG
1 GTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAG
* * * *
3490175 AGCCCACATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-
66 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
*
3490239 AGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCG
131 A-AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCG
* * *
3490283 GTAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGAG-CGGCTGA
1 GTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTG-GCCGGCTGA
* *
3490347 GCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATAC
65 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * *
3490412 GCAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG
130 GAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCG
*
3490456 GCAGCAC
1 GTAGCAC
3490463 ATGCTGGGCT
Statistics
Matches: 313, Mismatches: 33, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
171 39 0.12
172 140 0.45
173 133 0.42
174 1 0.00
ACGTcount: A:0.20, C:0.30, G:0.28, T:0.22
Consensus pattern (173 bp):
GTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
AAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCG
Found at i:3490237 original size:26 final size:26
Alignment explanation
Indices: 3490207--3490259 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3490197 GTTGACTTAG
*
3490207 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3490233 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3490259 G
1 G
3490260 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3490417 original size:26 final size:26
Alignment explanation
Indices: 3490380--3490432 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3490370 GTTGACTTAG
3490380 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
3490406 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3490432 G
1 G
3490433 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:3492725 original size:872 final size:869
Alignment explanation
Indices: 3491101--3494545 Score: 3859
Period size: 872 Copynumber: 3.9 Consensus size: 869
3491091 TTGTTTCGTC
* * * * * * *
3491101 GGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGTGTTACGGCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAG
* ** * * * * *
3491166 CACATGCTAGGCTCGGGCATGGGCTGCAGCCGTATTTTTCTTTGTTGGGGCACCTTCGTCGGAGC
66 CACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-TCGGGCACCATCATCGGAGC
* ** * * * * *
3491231 ATCGTCGGAGAACCTGACCGGTGGAATTTGGCTTCCGACGATCGGGGGGCCGGGGGGTGTGCACA
130 ATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGGGCGCA
* **
3491296 CATGATGTGTGATGGGTGCCAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AATCCTC
195 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAT-CTC
* * * * *
3491360 AAGAACTCACACCCCCTTAAAGTGCATTTGAGATTATGCATGTTTGCTGCCAATAGCCATTAAAG
259 AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
**
3491425 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTTAGTTTTTAGCTG
324 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * *
3491490 AATTTTTTTGTGCATGCCAA-AAAAAGTACAAGGATCACGTTTACCAGGTTTGGGG-CAAAAACT
389 AAATTTTTTGTGCATGACAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA-T
* * *
3491553 CCTTTCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTTAAAAATCATGAAAAATAGAAA
452 CCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* *
3491618 ACGAGTCATCTTGCCATGGAAACTTCACGTGAAGGCTTAAGGGACCATTGTCTGAATTTACAAGC
517 ACGAGTCGTCTTGCCAT-GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
**
3491683 CATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAA-CCCACCTACCACCCTATCG
581 CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCCACCTACCACCCTATCG
* * * * *
3491747 ATCCACGGCTTGTGCATCCCGTCTCTCTGGTCGACCTCGTGCCCGCCTGCCCACCCGCCCGCTCG
646 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-CCTGCCCACCCGCCCG-TC-
* * * *
3491812 TTTCATCGGTTGGCTTAGGCATACGGGGTTCATTTCCAGTCTAAGATCGGATC-GAATCGAGGGT
708 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGAATCGAGGGT
* * * * * *
3491876 TGCGGTAGCAGGA-CAGCATGCAGAGGGGGACCAGATCGATCCCCGGCTTGTGCATCCCCCCCTC
773 TGCCGTAGTAGGAGCAGCA-GCAGAGGGGGACCCGATCAATCCCCGGCTTGTACATCCACCCCTC
*
3491940 TGGCCGACTGAGCGTTCGCACGATCGTTTCATG
837 TGGCCGACTGAGCGCTCGCACGATCGTTTCATG
* **
3491973 GGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAGATCGGATCAGACCGAGGGTTACGGTGG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAG
** *
3492038 CACATGCTAGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCATCGGGCCACCATCATCGGAGC
66 CACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG-CACCATCATCGGAGC
** * ** * *
3492103 ATCATCGGAGAACCTGACCGACGGCATTGGGGTTACGGTGTTCGGGGGGCCGGGGGGTGGGTGCA
130 ATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGGGCGCA
* * * *
3492168 CATGATGTGCGATGGATGCTGGTACTTAGCCCTTCTATTGGCCCCCTTATCCCTCATCAAATCTT
195 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC-TATCCCTCATCAAATCTC
* * ** * *
3492233 GAGAACTCACACCCCGTTAAATTGCATTTGAGATTTTACAGGTTTGCTGTCAGTAACCATTAAAG
259 AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
3492298 TGTCTGAAATGGGGACACCTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTG
324 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* *
3492363 AAATTTTTTGTGCATGACAACAAAAATACAAGGATCATGTCTACCAAGTTTGATGG-CAAAAATC
389 AAATTTTTTGTGCATGACAACAAAAATACAAGGATCACGTCTACCAAGTTTG-GGGCCAAAAATC
* *
3492427 CTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAGAA
453 CTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* *
3492492 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCGTAAGGGACCACTGTATGAATTTACAAGCCA
518 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * *
3492557 TCAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAA-CCGACCTACCACCCTATCGAT
583 TAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCCACCTACCACCCTATCGAT
* *
3492621 CCACGGCTTACGCATCCCATCTCTCTGGCCGGCGTAGTGCCCACCTGCCCACCCGCCCGTTCATT
648 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-CCTGCCCACCCGCCCG-TC-TT
* * *
3492686 TCGTCGGTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATTGGATCGGAA-CAAGGGTTG
710 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGAATCGAGGGTTG
* * * * * * * * **
3492750 CTGCAATAGGATCGGCAGCACGTAGAGGGGACCCGATCAATCCACAGCTTGCACATCTTGCCCCT
775 CCGTAGTAGGAGCAGCAGCA-G-AG-GGGGACCCGATCAATCCCCGGCTTGTACATC-CACCCCT
* * * *
3492815 CTGGCCGGCTGAGCGCTCGCGCGCTTGTTTCATGG
836 CTGGCCGACTGAGCGCTCGCACGATCGTTTCAT-G
3492850 GTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
1 G--G---T-----T--G-A---C-TT---AG-----GCATACGGAGTTCATTCCCAGTCTAAGAT
* ** * *
3492915 CGGATCAGACCAAGGGTTGTGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCTGCATTTTTC
41 CGGATCAGACCGAGGGTTACGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * *
3492980 TTTCGTTGGGACACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCAATGGGGTTCCGGC
106 -TTCGTCGGG-CACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
* * *
3493045 AATCGAGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
169 GATCG-GGGGGCCGGGGGGTGGGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
3493110 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAGGAGCATTCGAGATTTTAC
233 TGGCCCCCTATCCCTCATCAAATCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
3493174 AGCTTTGCT-CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
298 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
*
3493238 TCTTGTACACTTCGAGTTTTTAGCTG-AATTCTTTTGTGCATGCCAACAAAAATACAAGGATCAC
363 TCTTGTACACTTCGAGTTTTTAGCTGAAATT-TTTTGTGCATGACAACAAAAATACAAGGATCAC
* * * *
3493302 ATCTACCAACTTTGGGACCAAAAATCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
427 GTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAG
*
3493367 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAACGCTTAAG
492 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
*
3493432 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAATATGTGCC
557 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCC
* * *
3493497 TAAA-CCCGCCTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTG
622 TAAACCCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* *
3493561 --CCC-GCCCACCCG-CTGT-TTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
687 CCCCCTGCCCACCCGCCCGTCTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
3493621 AATTAGACCAGACT-GAGGGTTGCCATAGTAGGATCAGCAGCACGCAGAGGGGGACCCGATCAAT
752 GATTGGATCAGAATCGAGGGTTGCCGTAGTAGG---AGCAGCA-GCAGAGGGGGACCCGATCAAT
* * * * ** *
3493685 CCCCGACTT-TCACATCCGACCCCTCTGGCC-AGCTGAGCGCCCGTACGGTCGTTTTGTT
813 CCCCGGCTTGT-ACATCC-ACCCCTCTGGCCGA-CTGAGCGCTCGCACGATCGTTTCATG
*
3493743 GGTTGACTTAGGCATACAAAGTTCATACCTAGTCTAAGCATACGAGTTCATTCCTAGTCTAAGAT
1 GGTTGACTTA-G--------G--C--A--TA--C---G-----GAGTTCATTCCCAGTCTAAGAT
* * * *
3493808 CGGATCGGACTGAGGGTTACGGCAGCACATAC-AGGGCTCGGGCATGTGCTGGTACCGCATTTTT
41 CGGATCAGACCGAGGGTTACGGCAGCACATGCTA-GGCTCGGGCATGTGCTGGTGCCGCATTTTT
* *** * * *
3493872 CTTC-TCCAGGGCACCATCATCGGAGCATTGCCATTGAACCTAACCGGCAGCATTGGGGTTCCGA
105 CTTCGT-C-GGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
** * * *
3493936 CGATCGGGAGGGCCGTGGGGGTGTTCGCACATGATGTACGATAGGTGCTGGTACTTGGCACTTAT
168 CGATCGGG-GGGCCG-GGGGGTGGGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* ** *
3494001 ATTGGCCCCCTGTCCCTCATCAAATCTTGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTT
231 ATTGGCCCCCTATCCCTCATCAAATCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
3494066 ACAGGTTTGCTGCCAGTAGCAATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAA
296 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * * *
3494131 AATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTATGCATGACAACAAAATTACAAGGATCA
361 AATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGACAACAAAAATACAAGGATCA
* * * *
3494196 CTTCTACCAAGTTTGGGGCCAAAAATTC-TTCCAAACAAATTTTAAAAAATCAGCGAACCGTAAA
426 CGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAA-AAATTTTAAAAAATC-TCGAACCGTAAA
* * * * *
3494260 ATG-TTC-GAAATCAGTAAAAAATAGAAAACGAGGCGTCTTCCCATGAAAACTTCACGTGAAAGG
489 AAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTCTTGCCATG-AAACTTCACGTG-AAGG
* * * ***
3494323 CTTAAGGGACCATTGTATTAATTTTCCAAGCCAT-AAAATAGCATTGGCATGTAGAAATATGAAG
551 CTTAAGGGACCATTGTATGAA-TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAG
* * * **
3494387 ATGTGCCTTAAATCCCACCTAGCACCCTATCGATCCATC-GCATGCATTATCCCGTACGTCTCTG
615 ATGTGCC-TAAACCCCACCTACCACCCTATCGATCCA-CGGCTTGC-GCATCCCGT-C-TCTCTG
** * * *
3494451 GCCAGTGCAGTTTTCGCCCGGCATGTCCAACCGCCCCGCTCGTTTCGTCGGTTGGGCTTAGGCAT
675 GCC-G-GC-GTAGT-GCCC--CCTGCCCACCCG-CCCG-TC-TTTCGTCGGTT-GGCTTAGGCAT
* *
3494516 GACAGAGTTCATTTCCAGTCTAAGATTGGA
730 -ACGGAGTTCATTCCCAGTCTAAGATTGGA
3494546 CCACACTGAG
Statistics
Matches: 2189, Mismatches: 279, Indels: 164
0.83 0.11 0.06
Matches are distributed among these distances:
871 4 0.00
872 422 0.19
873 257 0.12
874 19 0.01
875 25 0.01
876 35 0.02
877 7 0.00
879 2 0.00
880 1 0.00
881 2 0.00
882 1 0.00
883 3 0.00
885 1 0.00
887 1 0.00
888 2 0.00
889 1 0.00
890 1 0.00
891 4 0.00
892 57 0.03
893 223 0.10
894 101 0.05
895 180 0.08
896 35 0.02
897 69 0.03
898 17 0.01
899 27 0.01
900 13 0.01
901 347 0.16
902 122 0.06
903 85 0.04
904 63 0.03
905 3 0.00
906 1 0.00
908 1 0.00
910 1 0.00
911 7 0.00
913 2 0.00
914 1 0.00
916 10 0.00
917 11 0.01
918 25 0.01
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (869 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAG
CACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCACCATCATCGGAGCA
TCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGGGCGCAC
ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCAA
GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
ATTTTTTGTGCATGACAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT
TCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
AAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCCACCTACCACCCTATCGATCCA
CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCTGCCCACCCGCCCGTCTTTCGTCG
GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGAATCGAGGGTTGCCGTAG
TAGGAGCAGCAGCAGAGGGGGACCCGATCAATCCCCGGCTTGTACATCCACCCCTCTGGCCGACT
GAGCGCTCGCACGATCGTTTCATG
Found at i:3492890 original size:26 final size:26
Alignment explanation
Indices: 3492860--3492912 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3492850 GTTGACTTAG
3492860 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
3492886 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3492912 G
1 G
3492913 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:3493344 original size:901 final size:890
Alignment explanation
Indices: 3491984--3494423 Score: 3303
Period size: 901 Copynumber: 2.7 Consensus size: 890
3491974 GTTGACTTAG
* **
3491984 GCATACGGAGTTCATTCCCTGTCTAAGATCGGATCAGACCGAGGGTTACGGTGGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGCACATGCTAGG
** * **
3492049 CTCGGGCATGTGCTGGTGCCATATTTTTC-TTCATCGGGCCACCATCATCGGAGCATCATCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTC-TAGGG-CACCATCATCGGAGCATCGCCGGAG
* * * * *
3492113 AACCTGACCGACGGCATTGGGGTTACGGTGTTCGGGGGGCCGGGGGGTGGGTGCACATGATGTGC
129 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
3492178 GATGGATGCTGGTACTTAGCCCTTCTATTGGCCCCCTTATCCCTCATCAAATCTTGAGAACTCAC
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC-TATCCCTCATCAAATCTTGAGAACTCAC
** * *
3492243 ACCCCGTTAAATTGCATTTGAGATTTTACAGGTTTGCTGTCAGTAACCATTAAAGTGTCTGAAAT
258 ACCCC-TTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
3492308 GGGGACACCTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTG
**
3492373 TGCATGACAACAAAAATACAAGGATCATGTCTACCAAGTTTGATGG-CAAAAATCCTTTCGAAAA
386 TGCATGACAACAAAAATACAAGGATCACATCTACCAAGTTTG--GGCCAAAAATCCTTTCGAAAA
*
3492437 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAGAACGAGTCGTCT
449 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
3492502 TGCCATGAAACTTCACGTGAAGGCGTAAGGGACCACTGTATGAATTTACAAGCCATCAAAATGGC
514 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGC
*
3492567 ATTGGCACACAAAAATATGAAGATGTGCCTAAA-CCGACCTACCACCCTATCGATCCACGGCTTA
578 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCGACCTACCACCCTATCGATCCACGGCTTA
*
3492631 CGCATCCCATCTCTCTGGCCGGCGTAGTGCCCACCTGCCCACCCGCCCGTTCATTTCGTCGGTTG
643 CGCATCCCATCTCTCTGGCCGGCGTAGTG--C-CC-GCCCACCCG-CCG-T--TTTCGTCAGTTG
* * * *
3492696 GCTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATTGGATCGGAAC-AAGGGTTGCTGCA-A-TA
700 GCTTAGGCAAACGGAGTTCATTCCCAGTCTAAAATTAGACCAG-ACTAAGGGTTGC--CATAGTA
* * *
3492758 GGATCGGCAGCACGTAGA-GGGGACCCGATCAATCCACAG-CTTGCACATCTTG-CCCCTCTGGC
762 GGATCAGCAGCACGCAGAGGGGGACCCGATCAATCC-CAGACTTGCACATC-CGACCCCTCTGGC
* * * * * *
3492820 CGGCTGAGCGCTCGCGCGCTTGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTA
825 CAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATACCCAGTCTA
3492885 A
890 A
* **
3492886 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGCACATGCTAGG
* * * *
3492951 CTCGAGCATGTGCTGGTGCTGCATTTTTCTTTCGTTGGGACACCATCGTCGGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTC-TAGGG-CACCATCATCGGAGCATCGCCGGAG
* * *
3493016 AACCTGACCGACGGCAATGGGGTTCCGGCAATCGAGGGGGTCGGGGGGTGTGCGCACATGATGTG
129 AACCTGACCGACGGCATTGGGGTTCCGGCGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTG
* **
3493081 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTTGAGAACTCAC
** * *
3493146 ACCCCTTAAGGAGCATTCGAGATTTTACAGCTTTGCT-CCAGTAGCCATTAAAGTGTCTGAAATG
258 ACCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
3493210 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGT
* *
3493275 GCATGCCAACAAAAATACAAGGATCACATCTACCAACTTTGGGACCAAAAATCCTTTCGAAAAAA
387 GCATGACAACAAAAATACAAGGATCACATCTACCAAGTTTGGG-CCAAAAATCCTTTCGAAAAAA
* *
3493340 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
451 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
3493405 CCATGAAACTTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
516 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCAT
* * *
3493470 TGGCACACAGAAATATGAATATGTGCCTAAACCCG-CCTACCACCTTATCGATCCACGGCTTGCG
580 TGGCACACAGAAATATGAAGATGTGCCTAAACCCGACCTACCACCCTATCGATCCACGGCTTACG
* * * *
3493534 CATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCACCCGCTGTTTTCGTCAGTTGGCTTAGGCAT
645 CATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCGTTTTCGTCAGTTGGCTTAGGCAA
*
3493599 ACGGAGTTCATTCCCAGTCTAAAATTAGACCAGACTGAGGGTTGCCATAGTAGGATCAGCAGCAC
710 ACGGAGTTCATTCCCAGTCTAAAATTAGACCAGACTAAGGGTTGCCATAGTAGGATCAGCAGCAC
* * *
3493664 GCAGAGGGGGACCCGATCAATCCCCGACTTTCACATCCGACCCCTCTGGCCAGCTGAGCGCCCGT
775 GCAGAGGGGGACCCGATCAATCCCAGACTTGCACATCCGACCCCTCTGGCCAGCTGAGCGCCCGC
* ** * *
3493729 ACGGTCGTTTTGTTGGTTGACTTAGGCATACAAAGTTCATACCTAGTCTAA
840 ACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATACCCAGTCTAA
* * * *
3493780 GCATAC-GAGTTCATTCCTAGTCTAAGATCGGATCGGACTGAGGGTTACGGCAGCACATAC-AGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGCACATGCTA-G
* * * ***
3493843 GCTCGGGCATGTGCTGGTACCGCATTTTTCTTCTCCAGGGCACCATCATCGGAGCATTGCCATTG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTT-TCTAGGGCACCATCATCGGAGCATCGCCGGAG
* * * * *
3493908 AACCTAACCGGCAGCATTGGGGTTCCGACGATCGGGAGGGCCGTGGGGGTGTTCGCACATGATGT
129 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGG-GGGCCG-GGGGGTGTGCGCACATGATGT
* * * *
3493973 ACGATAGGTGCTGGTACTTGGCACTTATATTGGCCCCCTGTCCCTCATCAAATCTTGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTTGAGAACTCA
* *
3494038 CACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTTTGAAA
257 CA-CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
3494103 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
* * * * *
3494168 ATGCATGACAACAAAATTACAAGGATCACTTCTACCAAGTTTGGGGCCAAAAATTC-TTCCAAAC
385 GTGCATGACAACAAAAATACAAGGATCACATCTACCAAGTTT-GGGCCAAAAATCCTTTCGAAA-
* * * * *
3494232 AAATTTTAAAAAATCAGCGAACCGTAAAATG-TTC-GAAATCAGTAAAAAATAGAAAACGAGGCG
448 AAATTTTAAAAAATC-TCGAACCGTAAAAAGTTTCAAAAATC-GTGAAAAATAGAAAACGAGTCG
* * *
3494295 TCTTCCCATGAAAACTTCACGTGAAAGGCTTAAGGGACCATTGTATTAATTTTCCAAGCCATAAA
511 TCTTGCCATG-AAACTTCACGTG-AAGGCTTAAGGGACCATTGTATGAA-TTTACAAGCCATAAA
* *** *
3494360 ATAGCATTGGCATGTAGAAATATGAAGATGTGCCTTAAATCCC-ACCTAGCACCCTATCGATCCA
573 ATGGCATTGGCACACAGAAATATGAAGATGTGCC-TAAA-CCCGACCTACCACCCTATCGATCCA
3494424 TCGCATGCAT
Statistics
Matches: 1364, Mismatches: 145, Indels: 61
0.87 0.09 0.04
Matches are distributed among these distances:
891 4 0.00
892 57 0.04
893 238 0.17
894 141 0.10
895 177 0.13
896 31 0.02
897 64 0.05
898 17 0.01
899 24 0.02
900 4 0.00
901 344 0.25
902 114 0.08
903 88 0.06
904 61 0.04
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (890 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGCACATGCTAGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTCTAGGGCACCATCATCGGAGCATCGCCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTTGAGAACTCACACC
CCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCAT
GACAACAAAAATACAAGGATCACATCTACCAAGTTTGGGCCAAAAATCCTTTCGAAAAAATTTTA
AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATGGCATTGGCAC
ACAGAAATATGAAGATGTGCCTAAACCCGACCTACCACCCTATCGATCCACGGCTTACGCATCCC
ATCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCGTTTTCGTCAGTTGGCTTAGGCAAACGGAG
TTCATTCCCAGTCTAAAATTAGACCAGACTAAGGGTTGCCATAGTAGGATCAGCAGCACGCAGAG
GGGGACCCGATCAATCCCAGACTTGCACATCCGACCCCTCTGGCCAGCTGAGCGCCCGCACGCTC
GTTTCATGGGTTGACTTAGGCATACAAAGTTCATACCCAGTCTAA
Found at i:3496398 original size:26 final size:26
Alignment explanation
Indices: 3496362--3496414 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
3496352 GTTGACTTAG
3496362 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCATTCCCTA-TCTAA
3496388 GCATACGGAGTTCATTCCCTATCTAA
1 GCATACGGAGTTCATTCCCTATCTAA
3496414 G
1 G
3496415 ATCAGACTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCTATCTAA
Found at i:3497280 original size:26 final size:26
Alignment explanation
Indices: 3497251--3497303 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3497241 GTTGACTTAG
3497251 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3497277 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3497303 G
1 G
3497304 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3497743 original size:899 final size:897
Alignment explanation
Indices: 3495888--3506509 Score: 12760
Period size: 899 Copynumber: 12.0 Consensus size: 897
3495878 NNNNNNNNNN
*
3495888 TACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCGCC
1 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATC-CC
* *
3495953 GAA-C-CAAAAAGTTT-AAAAATCGTATAAAAAATGGAAAACGAGTCGTCTTGCCCATGAAACTT
65 GAACCGCAAAAAGTTTCAAAAATC--ATGAAAAATAGAAAACGAGTCGTCTTG-CCATGAAACTT
* * *
3496015 CACGGTGAAGGCTT-A-GGATCGTTGTATGAATTTTACAAGCCATAAAAATGGCATTGGCACGCA
127 CAC-GTGAAGGCTTAAGGGACCATTGTATGAA-TTTACAAGCCATAAAAATGGCATTGGCATGCA
* * * *
3496078 GAAATATGAAGATGCGCCTAAACCCACCTACCATCTTATCGATCCACGGCTTGCGTATCCCGTCT
190 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* ** * * * * **
3496143 CTCTGGTCGGTGTAGTGCCCACCCGTCCGCTTCGCCCGCTCGTTTTGTCGGTCGATTTAGGCATA
255 CTCTGGCCGACGAAGTGCCC-GCC--CC-C--CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * ** * *
3496208 CGGAGTTCATTCCCAGTCTAAGAT-TGAACCAGACCAAGGGTT-ACAACAGCAGGATTGGTAGCA
314 CGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGATCGAGGGTTGA-GGCAGCAGGATCGGCAGCA
* * *
3496271 TGCAGTGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCACCCG
377 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCG
3496336 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
442 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * ** * *
3496401 ATTCCCTA-TCTAAGATCAGACTGAATGGAGGGTTACGACAGCACATGATGGGCTCG-GCCATGT
507 ATTCCC-AGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAG-CATGT
* * * *
3496464 GTTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATC-ACCTGAGAACCTGACCGA
570 GTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGA-CGGAGAACCTGACCGG
* * * * * *
3496528 CGGCATTAGAGTTTCGACGAT--------CTGGGGGTGTGGGCACATGATGTGCGATGGGTGCTG
634 CGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
3496585 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACACCCGCATAAAG
699 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
3496650 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGGAATGGGTACACTTTT
764 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
3496715 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
829 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
3496780 AAAA
894 AAAA
* * * * * *
3496784 TAAAAGGATTATGTCTACCATGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTG
1 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCG
*
3496849 AACCGGAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
66 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
3496914 TAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
131 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * *
3496979 TGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCACAACCCGTCTCTCTGG
196 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * *
3497044 CCAACGAAGTGCCCGCCCACCCGCCCGTTTGTTTCGTTGGTTTGCTTAGGCATAC-GAGTTCATT
261 CCGACGAAGTGCCCGCCC-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
** * * * *
3497108 CCCAGTCTAAGATTGGACCAGATCGAGGGTTGCAGGCAGCAGGATTGGTAGCATGCAGTGGGGGA
325 CCCAGTCTAAGATCAGACCAGATCGAGGGTTG-AGGCAGCAGGATCGGCAGCACGCAGAGGGGGA
* * * * *
3497173 -CCGACCGATCCCTGGCTTGCGCATGCCGCCCCTCTGGCTGGCTGAGCACCCGTACGCTCGTTCC
389 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTC
*
3497237 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCTGTCTA
454 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
** * * **
3497302 AGATCAAACCGGACCAAGGGTTACGACAGCACATGCTGGGCTCGAGCAACTGTTGGTGCCGCATT
519 AGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATT
* ** * * * *
3497367 TTTCTTCACCGGGTCACCATCACCGGAGCATCGAAGAAGAACTTGACCGGCGGCATTGGGGTTCT
584 TTTCTTCACCGGGGCACCATCGTCGGAGCATCGACGGAGAACCTGACCGGCGGCATTGGGGTTCC
3497432 GGCGATCAGGGGGGCCGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
649 GGCGATC-GGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* *
3497497 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACGCCCCGTTAAAGAGCATTTGAGATT
712 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
3497562 TTAGAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
777 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
3497627 AAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGCGAATGCCAACAAAAA
842 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * *
3497683 TACAAGGATCACGGCTACCAACTTTAGGGCCAAAACTCCTTTGAAAAAAATTTAAAAAAATCCCG
1 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCG
** * *
3497748 AACCGCAAAAAGTTTTGAAAATCATGAAAATTAGAAAACGAGAT-GCCTTGCCATGAAACTTCAC
66 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG-TCGTCTTGCCATGAAACTTCAC
* * *
3497812 GTGGAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
130 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
*
3497877 CA-GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCT
195 -ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
** * * * *
3497941 GGTAGGC-ATAGTGCCCGCGCGCCAGCTCGTCCGC-CTGTTTCGTCAGTTGGCTTAGGCATACAG
259 GGCCGACGA-AGTGCCCGC-C-CC--C-CGCCCGCTC-GTTTCGTCGGTTGGCTTAGGCATACGG
* * * * *
3498004 AGTTCATTCCTAGTCTAAGATCAGACCA-AACTGAGGGAT-ATGGCAGCAGGATCGGTAGCACGT
317 AGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGA-GGCAGCAGGATCGGCAGCACGC
* * * * * *
3498067 AGAGGGGGACCCGACCGATCCCCGGCTTG-GCCTTCCCGCCCTTTTTGTCGACTGAGCACCCGCA
380 AGAGGGGGACCCGACCGATCCCCGGCTTGCG-CATCCCGCCCCTCTGGCCGGCTGAGCACCCGCA
* * *
3498131 CGCTCGTTTTGTGGGTTGACTTAGCCATACGGAGTTCATTCCCAGTGTAAGCATACGGAGTTCAT
444 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * * * *
3498196 TCCCTGTCTAAGATCAGACCAGACCGGGGGTTACGGTAGCACATGTTGGGCTCGGGCATGTGTTG
509 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGTTG
** * * *
3498261 GTGCCATATTTTTCTTCGCCGGGGCACCA---T-----CA-C--CGGAGAACCTGATCGACGGCA
574 GTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGACGGAGAACCTGACCGGCGGCA
** * *
3498315 TTGGGGTTCTAGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTAC
639 TTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* ** *
3498380 TTGGCCCTTATATTGGCCCCTTATCCCTC-TCCAAACCTCGAGAACTCACACCGGCATAAAGAGC
703 TTGGCCCTTATATTGGCCCCCTATCCCTCAT-CAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * * *
3498444 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATAGGGACACCTTTTAC
767 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
** *
3498509 AAATGGTCACAAAATCTTGTACAC-TCTGAGTTTTTAGCTGAATTTTTTTGAACTTGCCAGA-AA
832 AAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-ACAA
3498572 AAA
895 AAA
* * * ** * **
3498575 TACAAGGATTATGTCTACCAAGTTCGGCACCAAAAATCC-TTCTGAAAAA-TTTAAACAAATCCC
1 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAA-AAATCCC
* * * *
3498638 AAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAC
65 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
3498703 GTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGTCATAAAAATGGCATTGGCATGTAGAAAT
130 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
*
3498768 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCATCCCGTCTCTCTG
195 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * ** * *
3498833 GTCGGA-GTAGTGCTCGCCCGCCCGCCCATTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCA
260 G-CCGACGAAGTGCCCGCCC-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * *
3498897 TTCCCAGTCTAAGATC-GACC-GTTCTAAGGGTTGGGGTAGCAGGATCGGCAGCACGCAGAGGGG
323 TTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGAGGCAGCAGGATCGGCAGCACGCAGAGGGG
* * *
3498960 GACCC-AGTCGATCCCCGGCTTGCGCATCTCGCCCCTCTAGCCGGCTGAGCACCCGCACGCTCGT
387 GACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGT
3499024 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGT
451 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* ** * * * *
3499088 CTAAGATTGGACTAGACCAAGGGCTACGGTAGCACATGATGGGCTC-AGGCATGTGTTGGTGCCG
516 CTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGA-GCATGTGTTGGTGCCG
* *
3499152 CATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATC-ATCGAAGAACCTGACCGGCGGCATTGGG
580 CATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGA-CGGAGAACCTGACCGGCGGCATTGGG
* *
3499216 GTTCCGACGATCGGGGGGGCCGGGCGAGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTT
644 GTTCCGGCGATC-GGGGGGCC-GG-G-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
3499281 GGCCCTTATATTGGCACCCTATCCCTCATCAAACATCGAGAACTCACACCCCCTTAAAGAGCAAT
705 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* ** * *
3499346 TGAGATTTTACAGGTTTCCTGCCAGTAGTTATTAAAGTGTCTCAAAT-TGGACAACTTTTTTCAA
770 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC-ACTTTTTTCAA
* * *
3499410 ATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTCCATGCCAATAAAAA
834 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * * * * * *
3499474 TACAAGGATCATGACTACCAAGTTTGGGCCCAAAACGCCTTCCGAAAGAATTTTAAAATATCCTG
1 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCG
* * * *
3499539 AACCGTAAAAAGTGTCAAAAATCATGAAAAGTATAAAACGAGTCGTCTTGCCATGAAACTTCACG
66 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
3499604 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATA
131 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
3499669 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
196 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * *
3499734 CCGACGTAGTGCTCCG-CCCGC-CCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
261 CCGACGAAGTGC-CCGCCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * ** * *
3499797 CCCAGTCTAAGATCAGA-CTGAACCGAGGGTT-ACGATAGCAGTATCGGCAGCACACAGAGGGGG
325 CCCAGTCTAAGATCAGACCAG-ATCGAGGGTTGA-GGCAGCAGGATCGGCAGCACGCAGAGGGGG
* ** * * * *
3499860 TCCCGGTCGATCCCTGGCTTGCACATCCTGCCCCTCTGGCCGGCTGAGCACCCGTACGCTCGTTT
388 ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTT
**
3499925 CGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAG-A-AC-G-G----------G-C-
453 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
** * * *
3499974 ----T------GGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAT
518 AAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGCAT
** * * * *
3500029 TTTTCTTTGCTGGGGCAGCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGTATTGGGGTTC
583 TTTTCTTCACCGGGGCACCATCGTCGGAGCATCGACGGAGAACCTGACCGGCGGCATTGGGGTTC
*
3500094 CGGCGATCGGGGGGGCCGGTGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
648 CGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* *
3500159 ATATTGGCCCCCTATCCCTCATCAAAGCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
712 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
*
3500224 TTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
777 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * * *
3500289 AAAATATTTTACACTTCAAGTTTTTAGCTGAATTTTTTTCTGCATGCC-A-AAAAA
842 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * *
3500343 TACAAGGATCACGTCTACCAAGTTTGGGGGCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCG
1 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCG
* * * *
3500408 AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTCGCCATGAAGCTTCACG
66 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
3500473 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATA
131 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* *
3500538 TGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCACATCCCGTCTCTCTGG
196 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
** * ** ** * * * * *
3500603 ATG-TGCCCGT-CTGGCCACCCGTCCGCTCGTTTCATCGGTTGGCTTGGGAATACGGAGTTCATT
261 CCGACG-AAGTGCCCGCCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* ** * **** ** *
3500666 TCCAGTCTAAGATCAGACTGGACCGAGGGTTGCCATAGCAGGATCGATAGCACGTAGAGGGGGAC
325 CCCAGTCTAAGATCAGACCAGATCGAGGGTTGAGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
* * * * * * * * *
3500731 CCGGCTGATCCTCGACTTGCGCATCCCACCCCTCTGGCCGGTTAAGCGCCTGCACGCTCGTTTCG
390 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCG
* * * *
3500796 TGGGTTGACTTAGGCATACGAAGATCAATCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
455 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * *
3500861 GATCGGACCGGACCGAGGGTTGCGATAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCACATTC
520 GATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATTT
** * * *
3500926 TTCTTCGTCAGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCG
585 TTCTTCACCGGGGCACCATCGTCGGAGCATCGACGGAGAACCTGACCGGCGGCATTGGGGTTCCG
* * ** *
3500991 ACGATCGGGGGGGTCGAGGGGGTGTGTACACATGATGTTCGATGGGTGCTGGTACTTGGCCCTTA
650 GCGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
3501056 TATTGACCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
713 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * *
3501121 TATAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGGAAATGGGGAAACTTTTTTCAAATGGTCAC
778 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCAC
* * * *
3501186 AAAATCTTGTACACTTCGTGTTTTTAGCTAAAGTTTTTTGTGCATGCCAAAAAAAA
842 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* *
3501242 TACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACT-CTTTCCCAAAAAATTTTAAAAAATCCC
1 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-CAAAAAAATTTTAAAAAATCCC
*
3501306 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
65 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
3501371 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGGATTCGCACT-TAGAAA
130 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAA
* ** * * * *
3501435 TATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCAAAGCTGGCGCATTCCATCT-TTT
194 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
**
3501499 CGGCCGAC-ATAGT---------------GC-C----CGTCGGTTGGCTTAGGCATATAGAGTTC
259 -GGCCGACGA-AGTGCCCGCCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
** * * * * *
3501543 ATTCCCAGTCTAAGATTGGACCGGATCAAGGGTTGTGGTAGCAGGATCGACAGCA-GACAGAGGG
322 ATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGAGGCAGCAGGATCGGCAGCACG-CAGAGGG
* * * * * * * *
3501607 GGACCCGATCGGT-CCCAGTTTGAGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGTACG--C--
386 GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGT
3501667 -TC---GGTTGACTTAGGCATACGGAGTTCATT-CC---C--A--AT-C-----T-A-----A--
451 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * ** * *
3501706 -T---ATCGAACCAGA-CGAGGGTTGTGGCAGCACATGCTGGGCTC-AGGCGTTTG-TGGTGCCG
516 CTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGA-GCATGTGTTGGTGCCG
** * * *
3501764 CATTTTTCTTCATTGGGGCACCATCGTGGGAGCATC-ACCGGAGAACCTGACCGGCTGCATTAGG
580 CATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGA-CGGAGAACCTGACCGGCGGCATTGGG
* * * *
3501828 GTTTCGACGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCC
644 GTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * * *
3501893 CTTATATTGG-CCCTTTTCCCTCATCAAACCTCGAGAACTCACATCCCCTGAAAGAGCATTTGAG
709 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
3501957 ATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
774 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * * *
3502022 CACAAAATATTATACACTTCAAGTTTTTAGCTGAA-TTTTTTCTGCATGCCAACAAAAA
839 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* *
3502080 TACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCTCG
1 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCG
* *
3502145 AACCCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACG
66 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * *
3502210 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATTCAAAAATA
131 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
*
3502275 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGG
196 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * *
3502340 ACGGC-ATTGTGCCCGCCTGGCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
261 CCGACGA-AGTGCCCG-C---CC-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * *
3502404 TCATTCCCAGTCTAAGATCAGACCACATTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGG
320 TCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGAGGCAGCAGGATCGGCAGCACGCAGAGG
* * * *
3502469 GGGACCCAATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAG-AGCCCACACGCTC
385 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA-CCCGCACGCTC
*** * * *
3502533 GTTTCGTTCATTGAGTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCGCA
449 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * * *
3502598 GTCTAAGACCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGTTCGGGCATGTGCTGGAGTC
514 GTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCC
* * * * ** *
3502663 ACATTTTTCTTCATCGGGGCACCATCATCGGAGCATTG-CGGGAGAACCTGACCAACGGCATTAG
579 GCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGAC-GGAGAACCTGACCGGCGGCATTGG
* * * * *
3502727 GGTTCAGGCGATCGAGGGGCCCGGAGGGGGTGTGCACACATGATGTGTGTTGGGTGCTGGTACTT
643 GGTTCCGGCGATCG-GGGGGCC-G-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
3502792 GGCCCTTATATT-GCCCCCTATCCTTCATCAAACCTCGACAACTCACACCCCCATAAAGAGCATT
705 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
3502856 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
770 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
3502921 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAAGGTTTTTTGTGCATGCCAACAAAAA
835 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAA
*
3502985 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCCTAAAAAATTTTAAAAAATCCC
1 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-CAAAAAAATTTTAAAAAATCCC
* *
3503049 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
65 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
3503114 GTGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGGATTGGCACT-CAGAAA
130 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAA
* * *
3503178 TATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGCATTCCGTCTTTCT
194 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* *
3503243 GGCCGACGTAGT---------------GC-C----CGTCGGTTGGCTTAGGCATATGGAGTTCAT
259 GGCCGACGAAGTGCCCGCCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * * * *
3503288 TCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGTAGCAAGATCGACAGCA-GACAAAGGGGG
324 TCCCAGTCTAAGATCAGACCAGATCGAGGGTTGAGGCAGCAGGATCGGCAGCACG-CAGAGGGGG
* * * * * * *
3503352 ACCCGATCGGT-CCCAGCTTGCGCATCCCACCCCTCTGTCCGGCTGAGCGCCCGTACGCTCGTTT
388 ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTT
* * * *
3503416 CATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGCCTAAGCATACGGAGTTCATTCCCAATCT
453 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * ** * * *
3503481 AAGATCAGACCAG-CCAAGGGTTGTGGCAGCACATGCTGGGCTCGGGCGTGTGTTGGTGCAGCAT
518 AAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGCAT
* * * * * *
3503545 TTTTCTTCATCGGGGCACCATCGTGGGAGCATCGCCAGAGAACCTGACCGGCGGCATTAGCGTTC
583 TTTTCTTCACCGGGGCACCATCGTCGGAGCATCGACGGAGAACCTGACCGGCGGCATTGGGGTTC
* * * * *
3503610 CGGTGATCGGGGGGTCGGGGGGTGTACGCACATGATGTACGATGGGTGCTGGTATTTGGCCCTTA
648 CGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
3503675 TATTGGCCCCTTTTCCCTCATCAAACCTCGAGAACTCACA-CCCCTTGAAAGAGCATTTGAGATT
713 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AAAGAGCATTTGAGATT
3503739 TTA-A-----------AG--G----T---GT-T-TGAAATGGGGACACTTTTTTCAAATGGTCAC
777 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
3503781 AAAATCTTGTACACTTCGAGTTTTTTGCTGAATCTTTTTGTGCATGCCAACAAAAA
842 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
** * * * ** *
3503837 TACAAGGAAGACGCCTACCATGTTTGGGG-CAAAAATCCTTTTGAAAAAATTTAAAAAAATCCCG
1 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCG
* * * * *
3503901 AACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTTGTCCTGCCATGAAACTTCAAG
66 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
3503966 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCATGTAGAAATA
131 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * * *
3504031 TGAAAATGTGCCCAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCCCGTCTCTCTGG
196 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * *
3504096 CC-AGCGTAGTGCCCG---CCTGCCCGCTTGTTTCATCGGTTGGCCTAGGCATACGGAGTTCATT
261 CCGA-CGAAGTGCCCGCCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * *
3504157 CCTAGTCTAAGATCAGACCGGA-CTGAGGGTTGTGGTAGTAGGATCGGCAGCATGCAGAGAGGGA
325 CCCAGTCTAAGATCAGACCAGATC-GAGGGTTGAGGCAGCAGGATCGGCAGCACGCAGAGGGGGA
* * * * *
3504221 CCCGACCAACCCCCGGCTTGCGCATCCCACCCCTTTGGCCGGCTGAGCACCCACACGCTCGTTTC
389 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTC
* * * * *
3504286 ATGGGTTGACTGAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATCCCCAATCTA
454 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
*
3504351 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC-AGGCATGTGTT-GTGCCGCAT
519 AGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGA-GCATGTGTTGGTGCCGCAT
* * * * *
3504414 TTTTCTTCGTCC-GGGCAACATTG-CTGGAGCATCGCCGGAGAACCTGACCGGTGGCATTGGGGT
583 TTTTCTTC-ACCGGGGCACCATCGTC-GGAGCATCGACGGAGAACCTGACCGGCGGCATTGGGGT
* * * *
3504477 TCCGACGATCGGGGGGGTCGGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGATAATTGGC
646 TCCGGCGATC-GGGGGG-CCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
3504542 CCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
708 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * * *
3504607 GATTTTACGGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGA
773 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * *
3504672 TCACAAAATCTTGTACAGTTTGAATTTTTAGCTGAATTTTTTTGTGCATGCCTACAAAAA
838 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * *
3504732 TACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACACCTTTCCAAAAAATTTTAAAAAATCCCG
1 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCG
* * *
3504797 AACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGTCAAGAAACTTCACG
66 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
3504862 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
131 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
*
3504927 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGAATCCCGTCTCTCTGG
196 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * *
3504992 CC-A-GCATAGTACCCGCTTACCCGCCCGCCCACTTGTTTCGTCGGTTGGCTTAGGCATACGGAG
261 CCGACG-A-AGTGCCCG----CCC-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
** ** * *
3505055 TTCATTCCCAGTCTAAGATC--A--A-ATC--GGACTGA-GC-G-TTG-T-GGTAGCATGCAGAG
319 TTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGAGGCAGCAGGATCGGCAGCACGCAGAG
*
3505108 GGGGACCC-AGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCT
384 GGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCT
*
3505172 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCC
448 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * *
3505237 AGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGCACATGCTGGGCTTGGGCATGTGTTGGTGC
513 AGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGC
* * ** * * *
3505302 CGCATTTTTCTTCGCCGGGGCACCAACACCGGAGCATTGCCGGAGAACCTGACCGACGGCATTGG
578 CGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGACGGAGAACCTGACCGGCGGCATTGG
* *
3505367 GGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGC
643 GGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * * *
3505432 CCTTATATTTGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAAACCATTTGA
708 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * *
3505497 GATTTTACAGGTTTCCTCCCCGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
773 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
3505562 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
838 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * ** * * * * *
3505622 TACAAGGATCATGTGTACCAAGTTTTCGGACAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCA
1 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCG
* * *
3505687 AACCGCAAAAAGTTTCAAAAATCTTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACG
66 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
3505752 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATGCAAAAATA
131 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * *
3505817 TGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTAG
196 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * *
3505882 CCGACGTAGT----G---CCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTC
261 CCGACGAAGTGCCCGCCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * *
3505940 CTAGTCTAAGATCAGACCA-AGT-GAGGGTTGCA-GCAACAAGATCAGCAGCACGTAAAGGGGGA
326 CCAGTCTAAGATCAGACCAGA-TCGAGGGTTG-AGGCAGCAGGATCGGCAGCACGCAGAGGGGGA
* * * * * * * *
3506002 CCTGATCAATCCTCGGCTTGTGCATCCCGCCCGTCTGGCTGGCTGAGCACCCGCACGCTCGTTTT
389 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTC
* * * * *
3506067 GTTGGTTGACTTACGCATACGGAGTTCATTCCTAGTATAAGCATTCGGAGTTCATTCCCAGTCTA
454 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * ** ** * * *
3506132 AGATCTGATCAGACCGAGAGTTGTGATAGCACATACTGGGCTC-AGGCATGCGTTGGTGCCGTAT
519 AGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGA-GCATGTGTTGGTGCCGCAT
* * * * * *
3506196 TTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGTAGAACTTGACCGACGGTATTAGGGTTC
583 TTTTCTTCACCGGGGCACCATCGTCGGAGCATCGACGGAGAACCTGACCGGCGGCATTGGGGTTC
* *
3506261 TGGCGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTT
648 CGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * *
3506326 ATATTTGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTGAGATT
712 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * * *
3506391 TTACAAGTTTCCTCCCCGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
777 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
3506456 AAAATATTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAA
842 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
3506510 GTTTCAAAAA
Statistics
Matches: 8440, Mismatches: 990, Indels: 598
0.84 0.10 0.06
Matches are distributed among these distances:
837 1 0.00
838 258 0.03
839 62 0.01
840 88 0.01
841 49 0.01
842 9 0.00
843 73 0.01
844 30 0.00
845 9 0.00
848 1 0.00
850 2 0.00
851 210 0.02
852 51 0.01
853 61 0.01
854 1 0.00
855 2 0.00
856 1 0.00
857 1 0.00
858 3 0.00
859 1 0.00
862 2 0.00
863 94 0.01
864 40 0.00
865 1 0.00
866 1 0.00
867 3 0.00
868 92 0.01
869 611 0.07
870 47 0.01
871 228 0.03
872 129 0.02
873 11 0.00
874 119 0.01
875 52 0.01
876 53 0.01
877 6 0.00
878 160 0.02
879 150 0.02
880 177 0.02
882 2 0.00
883 2 0.00
884 8 0.00
885 89 0.01
886 149 0.02
887 53 0.01
888 4 0.00
889 505 0.06
890 760 0.09
891 207 0.02
892 432 0.05
893 117 0.01
894 16 0.00
895 351 0.04
896 500 0.06
897 86 0.01
898 84 0.01
899 1098 0.13
900 282 0.03
901 14 0.00
902 5 0.00
903 247 0.03
904 274 0.03
905 265 0.03
906 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCG
AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCGACGAAGTGCCCGCCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCAGACCAGATCGAGGGTTGAGGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
ATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTT
TCTTCACCGGGGCACCATCGTCGGAGCATCGACGGAGAACCTGACCGGCGGCATTGGGGTTCCGG
CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
Found at i:3498207 original size:26 final size:26
Alignment explanation
Indices: 3498156--3498207 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
3498146 TTGACTTAGC
*
3498156 CATACGGAGTTCATTCCCAGTGTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
*
3498182 CATACGGAGTTCATTCCCTGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
3498208 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:3499092 original size:25 final size:26
Alignment explanation
Indices: 3499041--3499092 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3499031 GTTGACTTAG
3499041 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3499067 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3499092 G
1 G
3499093 ATTGGACTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3500857 original size:26 final size:26
Alignment explanation
Indices: 3500809--3500861 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3500799 GTTGACTTAG
*
3500809 GCATACGAAGATCAATCCTAGTCTAA
1 GCATACGAAGATCAATCCCAGTCTAA
* * *
3500835 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGATCAATCCCAGTCTAA
3500861 G
1 G
3500862 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGATCAATCCCAGTCTAA
Found at i:3502587 original size:26 final size:26
Alignment explanation
Indices: 3502552--3502604 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3502542 ATTGAGTTAG
3502552 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
3502578 GCATATGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3502604 G
1 G
3502605 ACCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3503482 original size:26 final size:26
Alignment explanation
Indices: 3503431--3503483 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3503421 GTTGACTTAG
*
3503431 GCATACAGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAACCTAA
* *
3503457 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAACCTAA
3503483 G
1 G
3503484 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAACCTAA
Found at i:3504330 original size:26 final size:26
Alignment explanation
Indices: 3504300--3504352 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3504290 GTTGACTGAG
* *
3504300 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
3504326 GCATATGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
3504352 G
1 G
3504353 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:3505228 original size:26 final size:26
Alignment explanation
Indices: 3505192--3505244 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3505182 GTTGACTTAG
*
3505192 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3505218 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3505244 G
1 G
3505245 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3505613 original size:890 final size:884
Alignment explanation
Indices: 3495888--3511000 Score: 11677
Period size: 899 Copynumber: 17.2 Consensus size: 884
3495878 NNNNNNNNNN
* * * *
3495888 TACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCGCC
1 TACAAGAATCACGTCTACCAAGTTTGGGG-CAAAACACCTTTCCAAAAAATTTTAAAAAATC-CC
* * *
3495953 GAA-C-CAAAAAGTTT-AAAAATCGTATAAAAAATGGAAAACGAGTCGTCTTGCCCATGAAACTT
64 GAACCGCAAAAAGTTTCAAAAATC--ATGAAAAATAGAAAATGAGTCGTCTTG-CCATGAAACTT
* * *
3496015 CACGGTGAAGGCTT-A-GGATCGTTGTATGAATTTTACAAGCCATAAAAATGGCATTGGCACGCA
126 CAC-GTGAAGGCTTAAGGGACCATTGTATGAA-TTTACAAGCCATAAAAATGGCATTGGCATGCA
* * * * *
3496078 GAAATATGAAGATGCGCCTAAACCCACCTACCATCTTATCGATCCACGGCTTGCGTATCCCGTCT
189 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCT
* ** * * * * **
3496143 CTCTGGTC-GGTGTAGTGCCCACCCGTCCGCTTCGCCCGCTCGTTTTGTCGGTCGATTTAGGCAT
254 CTCTGGCCAGCAGTAGTG----CCCG--C-C--CGCCCACTTGTTTCGTCGGTTGGCTTAGGCAT
* ** *
3496207 ACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCAAGGGTTACAACAGCAGGAT-TGG-T-AG
310 ACGGAGTTCATTCCTAGTCTAAGA-T----CAGA-C---GG--AC-TGAGC--GTTGTGGATCAG
* * *
3496269 CATGCAGTGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCACC
361 CATGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACC
*
3496334 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
426 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGT
* * * ** * * *
3496399 TCATTCCCTA-TCTAAGATCAGACTGAATGGAGGGTTACGACAGCACATGATGGGCTC-GGCCAT
491 TCATTCCC-AGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGG-CAT
* * * *
3496462 GTGTTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCACCTGAGAACCTGACCG
554 GTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCG
* * * * * *
3496527 ACGGCATTAGAGTTTCGACGAT---------CTGGGGGTGTGGGCACATGATGTGCGATGGGTGC
619 ACGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGC
* * * * *
3496583 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACACCCGCATAA
684 TGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAA
* * * * * * *
3496648 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGGAATGGGTACACTT
749 AGACCATTTGAGATTTTACAGGTTTCCTCCCCGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
3496713 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
814 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
3496778 CAAAAA
879 CAAAAA
* * * * * * *
3496784 TAAAAGGATTATGTCTACCATGTTTGGGGCCAAAACTCC-TTCCAAAAAAATTTTAAAAAATCCT
1 TACAAGAATCACGTCTACCAAGTTTGGGG-CAAAACACCTTTCC-AAAAAATTTTAAAAAATCCC
* *
3496848 GAACCGGAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
64 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAC
*
3496913 GTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
129 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * * *
3496978 ATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCACAACCCGTCTCTCTG
194 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTG
* * ** * *
3497043 GCCAAC-GAAGTGCCCGCCCACCCGCCCGTTTGTTTCGTTGGTTTGCTTAGGCATAC-GAGTTCA
259 GCCAGCAGTAGTGCCCG----CCCGCCCACTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* ** ** *
3497106 TTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCAGGCAGCAGGATTGG-T-AGCATGCAGTGG
320 TTCCTAGTCTAAGA-T----CAGA-C--GGACTG-A-GC-G-TTG--TGGATCAGCATGCAGAGG
* * * * *
3497169 GGGA-CCGACCGATCCCTGGCTTGCGCATGCCGCCCCTCTGGCTGGCTGAGCACCCGTACGCTCG
371 GGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCG
* * *
3497233 TTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCTG
436 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAG
** * * * **
3497298 TCTAAGATCAAACCGGACCAAGGGTTACGACAGCACATGCTGGGCTC-GAGCAACTGTTGGTGCC
501 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAG-GCATGTGTTGGTGCC
* * * ** * * *
3497362 GCATTTTTCTTCACCGGGTCACCATCACCGGAGCATCGAAGAAGAACTTGACCGGCGGCATTGGG
565 GCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGG
* * *
3497427 GTTCTGGCGATCAGGGGGGCCGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
630 GTTCCGACGATCAGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGG
* * * * *
3497492 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACGCCCCGTTAAAGAGCATTTG
694 CCCTTATATTTGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTG
* * * * *
3497557 AGATTTTAGAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
759 AGATTTTACAGGTTTCCTCCCCGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
3497622 GTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGCGAATGCCAACAAAAA
824 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * * ** *
3497683 TACAAGGATCACGGCTACCAACTTTAGGGCCAAAACTCCTTTGAAAAAAATTTAAAAAAATCCCG
1 TACAAGAATCACGTCTACCAAGTTT-GGGGCAAAACACCTTTCCAAAAAATTTTAAAAAATCCCG
** * * *
3497748 AACCGCAAAAAGTTTTGAAAATCATGAAAATTAGAAAACGAGAT-GCCTTGCCATGAAACTTCAC
65 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAG-TCGTCTTGCCATGAAACTTCAC
* * *
3497812 GTGGAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
129 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* *
3497877 CA-GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCT
194 -ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCT
* * * * *
3497941 GG-TAGGCA-TAGTGCCCGCGCGCCAGCTCGTCCGCCTGTTTCGTCAGTTGGCTTAGGCATACAG
258 GGCCA-GCAGTAGTG-CC-CGC-CC-G--C--CCACTTGTTTCGTCGGTTGGCTTAGGCATACGG
** * * * *
3498004 AGTTCATTCCTAGTCTAAGATCAGACCAAACTGAGGGATATGGCAGCAGGATCGGTAGCACGTAG
314 AGTTCATTCCTAGTCTAAGATCAGA-CGGACTGAGCG-T-T----G-TGGATC---AGCATGCAG
* * * * * * *
3498069 AGGGGGACCCGACCGATCCCCGGCTTG-GCCTTCCCGCCCTTTTTGTCGACTGAGCACCCGCACG
368 AGGGGGACCCGACCAATCCCCGGCTTGCG-CATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACG
* * * *
3498133 CTCGTTTTGTGGGTTGACTTAGCCATACGGAGTTCATTCCCAGTGTAAGCATACGGAGTTCATTC
432 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTC
* * * * * * * *
3498198 CCTGTCTAAGATCAGACCAGACCGGGGGTTACGGTAGCACATGTTGGGCTCGGGCATGTGTTGGT
497 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGTTGGT
** *
3498263 GCCATATTTTTCTTCGCCGGGGCACCAT--------CA---CCGGAGAACCTGATCGACGGCATT
562 GCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATT
* * *
3498317 GGGGTT-CTAGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACT
627 GGGGTTCCGA-CGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACT
* * ** * *
3498381 TGGCCCTTATATTGGCCCCTTATCCCTC-TCCAAACCTCGAGAACTCACACCGGCATAAAGAGCA
691 TGGCCCTTATATTTGCCCCCTATCCCTCGT-CAAACCTCGAGAACTCACACCCCCTTAAAGACCA
* * * * * * *
3498445 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATAGGGACACCTTTTACA
755 TTTGAGATTTTACAGGTTTCCTCCCCGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
** *
3498510 AATGGTCACAAAATCTTGTACAC-TCTGAGTTTTTAGCTGAATTTTTTTGAACTTGCCAGA-AAA
820 AATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-ACAAA
3498573 AA
883 AA
* * * * ** **
3498575 TACAAGGATTATGTCTACCAAGTTCGGCACCAAAA-ATCC-TTCTGAAAAA-TTTAAACAAATCC
1 TACAAGAATCACGTCTACCAAGTTTGG-GGCAAAACA-CCTTTCCAAAAAATTTTAAA-AAATCC
* * *
3498637 CAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
63 CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
* * *
3498702 CGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGTCATAAAAATGGCATTGGCATGTAGAAA
128 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* *
3498767 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCATCCCGTCTCTCT
193 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCT
* * * *
3498832 GGTC-GGAGTAGTGCTCGCCCGCCCGCCCA-TTCATTTCGTCAGTTGGCTTAGGCATACGGAGTT
258 GGCCAGCAGTA--G-T-GCCCGCCCGCCCACTT-GTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* ** * * *
3498895 CATTCCCAGTCTAAGATC-GACCGTTCTAAGGGTTGGGGTAGCAGGATCGGCAGCACGCAGAGGG
318 CATTCCTAGTCTAAGATCAGA-CGGACTGAGCGTT---GT----GGAT---CAGCATGCAGAGGG
* * * *
3498959 GGACCC-AGTCGATCCCCGGCTTGCGCATCTCGCCCCTCTAGCCGGCTGAGCACCCGCACGCTCG
372 GGACCCGA-CCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCG
*
3499023 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAG
436 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAG
* ** * * * * *
3499087 TCTAAGATTGGACTAGACCAAGGGCTACGGTAGCACATGATGGGCTCAGGCATGTGTTGGTGCCG
501 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGTTGGTGCCG
* ** * *
3499152 CATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCATCGAAGAACCTGACCGGCGGCATTGGGG
566 CATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
*
3499217 TTCCGACGATCGGGGGGGCCGGGCGAGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTG
631 TTCCGACGATCAGGGGGGCC-GG-G-GGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTG
* * * * * *
3499282 GCCCTTATATTGGCACCCTATCCCTCATCAAACATCGAGAACTCACACCCCCTTAAAGAGCAATT
693 GCCCTTATATTTGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTT
* * ** * *
3499347 GAGATTTTACAGGTTTCCTGCCAGTAGTTATTAAAGTGTCTCAAAT-TGGACAACTTTTTTCAAA
758 GAGATTTTACAGGTTTCCTCCCCGTAGCCATTAAAGTGTCTGAAATGGGGAC-ACTTTTTTCAAA
* * *
3499411 TGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTCCATGCCAATAAAAA
822 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * * * * *
3499474 TACAAGGATCATGACTACCAAGTTTGGGCCCAAAACGCC-TTCCGAAAGAATTTTAAAATATCCT
1 TACAAGAATCACGTCTACCAAGTTTGGG-GCAAAACACCTTTCC-AAAAAATTTTAAAAAATCCC
* * * * *
3499538 GAACCGTAAAAAGTGTCAAAAATCATGAAAAGTATAAAACGAGTCGTCTTGCCATGAAACTTCAC
64 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAC
*
3499603 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAAT
129 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
*
3499668 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
194 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTG
* ** *
3499733 GCC-G-ACGTAGTGCTCCGCCCGCCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
259 GCCAGCA-GTAGTGC-CCGCCCG-CCCACTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * ** *
3499796 TCCCAGTCTAAGATCAGACTGAACCGAGGGTTACGATAGCAGTATCGGCAGCACACAGAGGGGGT
321 TCCTAGTCTAAGATCAGAC-GGACTGAGCGTT--G-T-G--G-AT---CAGCATGCAGAGGGGGA
** * * * * *
3499861 CCCGGTCGATCCCTGGCTTGCACATCCTGCCCCTCTGGCCGGCTGAGCACCCGTACGCTCGTTTC
375 CCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTC
3499926 GTGGGTTGAC-T-----TA--G-G-------C-A---T----ATA--GAGTTCATTCCCAGTCTA
440 GTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * * * *
3499965 AGAACGGGCTGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATT
505 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGTTGGTGCCGCATT
* * * * * * *
3500030 TTTCTTTGCTGGGGCAGCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGTATTGGGGTTCC
570 TTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCC
* * * *
3500095 GGCGATCGGGGGGGCCGGTGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
635 GACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTA
* * * * *
3500160 TATTGGCCCCCTATCCCTCATCAAAGCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
700 TATTTGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTGAGATTT
* * * *
3500225 TATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
765 TACAGGTTTCCTCCCCGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * *
3500290 AAATATTTTACACTTCAAGTTTTTAGCTGAATTTTTTTCTGCATGCC-A-AAAAA
830 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * *
3500343 TACAAGGATCACGTCTACCAAGTTTGGGGGCAAAACTCC-TTCCAAAAAAATTTTAAAAAATCTC
1 TACAAGAATCACGTCTACCAAGTTT-GGGGCAAAACACCTTTCC-AAAAAATTTTAAAAAATCCC
* * * * *
3500407 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTCGCCATGAAGCTTCAC
64 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAC
*
3500472 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAAT
129 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * *
3500537 ATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCACATCCCGTCTCTCTG
194 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTG
*** * * * * * * * * * *
3500602 GATGTGCCCGT-CTGGCCACCCGTCCGCTCGTTTCATCGGTTGGCTTGGGAATACGGAGTTCATT
259 G-CCAG-CAGTAGTGCCCGCCCGCCCACTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA-T
* * * *
3500666 TCC-AGTCTAAGATCAGACTGGACCGAGGGTTGCCATAGCAGGATCGATAGCACGTAGAGGGGGA
321 TCCTAGTCTAAGATCAGAC-GGACTGAGCGTTG---T----GGATC---AGCATGCAGAGGGGGA
* ** * * * * * * *
3500730 CCCGGCTGATCCTCGACTTGCGCATCCCACCCCTCTGGCCGGTTAAGCGCCTGCACGCTCGTTTC
375 CCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTC
* * *
3500795 GTGGGTTGACTTAGGCATACGAAGATCAATCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
440 GTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
** * * *
3500860 AGATCGGACCGGACCGAGGGTTGCGATAGCACATGCTAGGCTC-GAGCATGTGCTGGTGCCACAT
505 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAG-GCATGTGTTGGTGCCGCAT
* * * * * **
3500924 TCTTCTTCGTCAGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTC
569 TTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTC
* * ** * *
3500989 CGACGATCGGGGGGGTCGAGGGGGTGTGTACACATGATGTTCGATGGGTGCTGGTACTTGGCCCT
634 CGACGATCAGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCT
* * *
3501054 TATA-TTGACCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
698 TATATTTG-CCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTGAGA
* * * * * *
3501118 TTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGGAAATGGGGAAACTTTTTTCAAATGGT
762 TTTTACAGGTTTCCTCCCCGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGT
* * * *
3501183 CACAAAATCTTGTACACTTCGTGTTTTTAGCTAAAGTTTTTTGTGCATGCCAAAAAAAA
826 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * *
3501242 TACAAGGATCACGTCTATCAAGTTTGGGGCCAAAAC-TCTTTCCCAAAAAATTTTAAAAAATCCC
1 TACAAGAATCACGTCTACCAAGTTTGGGG-CAAAACACCTTT-CCAAAAAATTTTAAAAAATCCC
* *
3501306 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
64 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAC
* * *
3501371 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGGATTCGCACT-TAGAAA
129 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAA
* * * * * *
3501435 TATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCAAAGCTGGCGCATTCCATCT-TTT
193 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCT
**
3501499 CGGCC-GACA-TAGT--------G--C-C------CGTCGGTTGGCTTAGGCATATAGAGTTCAT
258 -GGCCAG-CAGTAGTGCCCGCCCGCCCACTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* ** * *
3501545 TCCCAGTCTAAGATTGGACCGGA-TCAAGGGTTGTGGTAGCAGGATCGACAGCA-GACAGAGGGG
321 TCCTAGTCTAAGATCAGA-CGGACT-GAGCG-T-T-GT----GGAT---CAGCATG-CAGAGGGG
* ** * * * * * *
3501608 GACCCGATCGGT-CCCAGTTTGAGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGTACG--C---
373 GACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTT
3501667 TC---GGTTGACTTAGGCATACGGAGTTCATTCC----C--A--AT-C-----T-A-----A---
438 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * * *
3501706 T---ATCGAACCAGA-CGAGGGTTGTGGCAGCACATGCTGGGCTCAGGCGTTTG-TGGTGCCGCA
503 TAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGTTGGTGCCGCA
*** ** * * * *
3501766 TTTTTCTTCATTGGGGCACCATCGTGGGAGCATCACCGGAGAACCTGACCGGCTGCATTAGGGTT
568 TTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTT
* * * *
3501831 TCGACGATC-GGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCT
633 CCGACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCT
* * * * * * *
3501895 TATA-TTGGCCCTTTTCCCTCATCAAACCTCGAGAACTCACATCCCCTGAAAGAGCATTTGAGAT
698 TATATTTGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTGAGAT
* * * *
3501959 TTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
763 TTTACAGGTTTCCTCCCCGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * *
3502024 CAAAATATTATACACTTCAAGTTTTTAGCTGAA-TTTTTTCTGCATGCCAACAAAAA
828 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * *
3502080 TACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCTCG
1 TACAAGAATCACGTCTACCAAGTTTGGGG-CAAAACACCTTTCCAAAAAATTTTAAAAAATCCCG
* * *
3502145 AACCCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACG
65 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACG
* * *
3502210 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATTCAAAAATA
130 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* *
3502275 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGG
195 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGG
* * * * *
3502340 ACGGCA-TTGTGCCCGCCTGGCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
260 CCAGCAGTAGTGCCCG-C---CCGCCCA----CTTGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * *
3502404 TCATTCCCAGTCTAAGATCAGAC-CACATTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAG
317 TCATTCCTAGTCTAAGATCAGACGGAC--TGAGCGTTGT-------GGAT---CAGCATGCAGAG
* * * * *
3502468 GGGGACCCAATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAG-AGCCCACACGCT
370 GGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA-CCCGCACGCT
*** * * * *
3502532 CGTTTCGTTCATTGAGTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCGC
434 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCC
* * * * * * *
3502597 AGTCTAAGACCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGTTCGGGCATGTGCTGGAGT
499 AGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGTTGGTGC
* ** ** * * * *
3502662 CACATTTTTCTTCATCGGGGCACCATCATCGGAGCATTGCGGGAGAACCTGACCAACGGCATTAG
564 CGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGG
* * * * ***
3502727 GGTTCAGGCGATC-GAGGGGCCCGGAGGGGGTGTGCACACATGATGTGTGTTGGGTGCTGGTACT
629 GGTTCCGACGATCAG-GGGGGCC-G-GGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACT
* * * * *
3502791 TGGCCCTTATA-TTGCCCCCTATCCTTCATCAAACCTCGACAACTCACACCCCCATAAAGAGCAT
691 TGGCCCTTATATTTGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAGACCAT
* * *
3502855 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
756 TTGAGATTTTACAGGTTTCCTCCCCGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
3502920 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAAGGTTTTTTGTGCATGCCAACAAAAA
821 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAA
* *
3502985 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCTTTCCTAAAAAATTTTAAAAAATCCC
1 TACAAGAATCACGTCTACCAAGTTTGGGG-CAAAACACCTTTCC-AAAAAATTTTAAAAAATCCC
* * *
3503049 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
64 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAC
* *
3503114 GTGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGGATTGGCACT-CAGAAA
129 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAA
* * * *
3503178 TATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGCATTCCGTCTTTCT
193 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCT
*
3503243 GGCC-G-ACGTAGT--------G--C-C------CGTCGGTTGGCTTAGGCATATGGAGTTCATT
258 GGCCAGCA-GTAGTGCCCGCCCGCCCACTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* ** * * *
3503289 CCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGTAGCAAGATCGACAGCAGACAAAGGGGGAC
322 CCTAGTCTAAGATCAGA-CGGACTGAGCGTTGTGG-ATC-AG--C-A-TGCAG----AGGGGGAC
* ** * * * * * *
3503354 CCGATCGGT-CCCAGCTTGCGCATCCCACCCCTCTGTCCGGCTGAGCGCCCGTACGCTCGTTTCA
376 CCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCG
* * * *
3503418 TGGGTTGACTTAGGCATACAGAGTTCATTCCCAGCCTAAGCATACGGAGTTCATTCCCAATCTAA
441 TGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
3503483 GATCAGACCAG-CCAAGGGTTGTGGCAGCACATGCTGGGCTCGGGCGTGTGTTGGTGCAGCATTT
506 GATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGTTGGTGCCGCATTT
** ** * * * *
3503547 TTCTTCATCGGGGCACCATCGTGGGAGCATCGCCAGAGAACCTGACCGGCGGCATTAGCGTTCCG
571 TTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCG
** * * * * *
3503612 GTGATC-GGGGGGTCGGGGGGTGTACGCACATGATGTACGATGGGTGCTGGTATTTGGCCCTTAT
636 ACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTAT
* * * * *
3503676 ATTGGCCCCTTTTCCCTCATCAAACCTCGAGAACTCACA-CCCCTTGAAAGAGCATTTGAGATTT
701 ATTTGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTT-AAAGACCATTTGAGATTT
*
3503740 TA-A--------------AG--------GTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACA
765 TACAGGTTTCCTCCCCGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
3503782 AAATCTTGTACACTTCGAGTTTTTTGCTGAATCTTTTTGTGCATGCCAACAAAAA
830 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * ** *
3503837 TACAAGGAA-GACGCCTACCATGTTTGGGGCAAAA-ATCCTTTTGAAAAAATTTAAAAAAATCCC
1 TACAA-GAATCACGTCTACCAAGTTTGGGGCAAAACA-CCTTTCCAAAAAATTTTAAAAAATCCC
* * * *
3503900 GAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTTGTCCTGCCATGAAACTTCAA
64 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAC
* *
3503965 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCATGTAGAAAT
129 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * * *
3504030 ATGAAAATGTGCCCAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCCCGTCTCTCTG
194 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTG
* * * *
3504095 GCCAGC-GTAGTGCCCGCCTGCCCGCTTGTTTCATCGGTTGGCCTAGGCATACGGAGTTCATTCC
259 GCCAGCAGTAGTGCCCGCCCGCCCACTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* *
3504159 TAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGTAGGATCGGCAGCATGCAGAGAGGGACCC
324 TAGTCTAAGATCAGA-CGGACTGA--G-CGT--T-GT-GGAT---CAGCATGCAGAGGGGGACCC
* * * * *
3504224 GACCAACCCCCGGCTTGCGCATCCCACCCCTTTGGCCGGCTGAGCACCCACACGCTCGTTTCATG
378 GACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTG
* * * * *
3504289 GGTTGACTGAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATCCCCAATCTAAGA
443 GGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
3504354 TCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGTT-GTGCCGCATTTTT
508 TCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGTTGGTGCCGCATTTTT
* * * **
3504418 CTTCGTCC-GGGCAACATTGCTGGAGCATCGCCGGAGAACCTGACCGGTGGCATTGGGGTTCCGA
573 CTTCG-CCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* * * * *
3504482 CGATCGGGGGGGTCGGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGATAATTGGCCCTTA
637 CGATCAGGGGGG-CCGG-GGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTA
* * * *
3504547 TATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
700 TATTTGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTGAGATTT
* * * ** *
3504612 TACGGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACA
765 TACAGGTTTCCTCCCCGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * *
3504677 AAATCTTGTACAGTTTGAATTTTTAGCTGAATTTTTTTGTGCATGCCTACAAAAA
830 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
3504732 TACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACACCTTTCCAAAAAATTTTAAAAAATCCCG
1 TACAAGAATCACGTCTACCAAGTTTGGGG-CAAAACACCTTTCCAAAAAATTTTAAAAAATCCCG
* * * *
3504797 AACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGTCAAGAAACTTCACG
65 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACG
3504862 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
130 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* *
3504927 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGAATCCCGTCTCTCTGG
195 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGG
*
3504992 CCAGCATAGTACCCGCTTACCCGCCCGCCCACTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
260 CCAGC--AGTA---G--TGCCCGCCCGCCCACTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* *
3505057 CATTCCCAGTCTAAGATCAAATCGGACTGAGCGTTGTGG-T-AGCATGCAGAGGGGGACCC-AGC
318 CATTCCTAGTCTAAGATCAGA-CGGACTGAGCGTTGTGGATCAGCATGCAGAGGGGGACCCGA-C
* *
3505119 CGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
381 CAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
3505184 TGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
446 TGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * **
3505249 GACCGGACCAAGGGTTACGGCAGCACATGCTGGGCTTGGGCATGTGTTGGTGCCGCATTTTTCTT
511 GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGTTGGTGCCGCATTTTTCTT
* * *
3505314 CGCCGGGGCACCAACACCGGAGCATTGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
576 CGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
3505379 C-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTTG
641 CAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTTG
*
3505443 CCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAAACCATTTGAGATTTTACAGG
706 CCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAGG
3505508 TTTCCTCCCCGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
771 TTTCCTCCCCGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
3505573 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
836 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * * * *
3505622 TACAAGGATCATGTGTACCAAGTTTTCGGACAAAACTCC-TTCCGAAAAAATTTTAAAAAATCTC
1 TACAAGAATCACGTCTACCAAG-TTTGGGGCAAAACACCTTTCC-AAAAAATTTTAAAAAATCCC
* * *
3505686 AAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCAC
64 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAC
* *
3505751 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATGCAAAAAT
129 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* *
3505816 ATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTA
194 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTG
* *
3505881 GCC-G-ACGTAGTGCCCGCCCGCTCA----TTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTC
259 GCCAGCA-GTAGTGCCCGCCCGCCCACTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
** * * *
3505940 CTAGTCTAAGATCAGACCAAGTGAGGGTTGCAGCAACAAGATCAGCA-GCACGTAAAGGGGGACC
323 CTAGTCTAAGATCAGACGGACTGAGCGTTG-TG------GATCAGCATGCA-G---AGGGGGACC
* * * * * * *
3506004 TGATCAATCCTCGGCTTGTGCATCCCGCCCGTCTGGCTGGCTGAGCACCCGCACGCTCGTTTTGT
377 CGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGT
* * * *
3506069 TGGTTGACTTACGCATACGGAGTTCATTCCTAGTATAAGCATTCGGAGTTCATTCCCAGTCTAAG
442 GGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * ** * * *
3506134 ATCTGATCAGACCGAGAGTTGTGATAGCACATACTGGGCTCAGGCATGCGTTGGTGCCGTATTTT
507 ATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGTTGGTGCCGCATTTT
* * * * * * * * *
3506199 TCTTCACCGGGGCACCATCGTCGGAGCATCGTCGTAGAACTTGACCGACGGTATTAGGGTTCTGG
572 TCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
3506264 CGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATA
637 CGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATA
3506329 TTTGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTA
702 TTTGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTA
*
3506394 CAAGTTTCCTCCCCGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
767 CAGGTTTCCTCCCCGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * **
3506459 ATATTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAGT
832 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * ** * *** * ** * * ** * * *** ** *
3506512 TTCAAAAAT--CGT-GA--AAAATAGAAAACGAGTCATCTTGCCATGAAACTTGACGTGAAGGCT
1 TACAAGAATCACGTCTACCAAGTTTG-GGGCAAAACACCTTTCCAAAAAATTTTA-AAAAATCCC
* ** ** ** * * * *
3506572 TAA--GGGACCA-TTGT-ATGAAT--TTACAAGCCATA-AAAATG-G-C--ATTGGCATGCAGAA
64 GAACCGCAAAAAGTT-TCAAAAATCATGA-AA--AATAGAAAATGAGTCGTCTTGCCATG-A-AA
* * * ** ** ** * * *** *
3506626 -AT-A--TGAA-G---ATGTG-CC--TAAATCCACCTACCACCCTATCGATCCACGGC-TTGGGC
123 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC-AT--AAAAATGGCATT-GGC
* * ** * ** * * * * * * * *
3506679 GTCCA-ATCTCTCTGGCTGACGTAGTGCCCACCCGATTGCCCGCCCATCCGCTCGTTTCG-TCGG
184 ATGCAGA--AATAT-GAAGA--T-GTGCCTA----A--ACCCACCTA-CCAC-CCTATCGATC-C
** * * ** ** * ** * *
3506742 TTGGCTTAG-GCATACGGAGT-TCATTCCCAGTC--TAAGAT--CAGACAGGACCAC-GGTTT-G
234 AAGGCTT-GCGCATCCCGTCTCTC-TGGCCAG-CAGT-AG-TGCCCG-CCCGCCCACTTGTTTCG
* * * ** * **
3506799 -C----AG--TA-GC--A-GGA--T--TGCC-AG-C-ACG--CAGA-GG-GGGA-C-CTGATCAA
293 TCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACGGACTGAGCGTTG-TGGA
* ** ** * * ** * * *
3506840 TC-CCCGGCTTA--CGCATCCC-ACCCGTCTGGCTGGC-TGAGCA-CCCGCACGCTCATTTCGTG
357 TCAGCATGCAGAGGGGGA-CCCGACCAATC--CCCGGCTTGCGCATCCCGC-C-C-C---TC-T-
** * * * * * * ** * * * *
3506899 GGTTGACTTAGGCATACAG-A-GTTC-ATTC-CCGG-T--C-TAAGCATTCAGAGTTCATTCCCA
411 GGCCGGCTGA-GCA-CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTA
* * *** * * ** * * *
3506956 GCCTAAG-AT-CGGA--TCGACTGAGAGT-TACGA-CAGCACATG--C-TGGGCT-CGG--GCAT
474 GTCTAAGCATACGGAGTTC-ATTCCCAGTCTAAGATC-GGACCGGACCGAGGGTTGCGGCAGCAC
* * * * ** * ****** * * * * * * *
3507009 GTGTTGGTGC-C--GTAT-TTTTCTTCACCG-GGGCACCATCGTC--AG-AGCATCGTCGTAGAA
537 ATGCTGG-GCTCAGGCATGTGTTGGT-GCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCA
* * * * ** * ** * * * ****
3507066 CCTGACC-GACG-GCATTAAGGTTCTGGCGATTGGGGGGGCCG--G---GGGTGTGCGCACATGG
600 TC-G-CCGGA-GAACCTGACCG-AC-GGC-ATT-GGGGTTCCGACGATCAGGGGGGC-CGGGGGG
** * * * * ** ** *
3507124 TGTGCG-ATGGGTGCTG-GTACTTGGCCCTTATA-TTGGCC------------CCCTATCCCTCA
657 TGTGCGCA--CATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCG
* * * * * * *
3507174 TCGAACCCCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
720 TCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTCCTCCCCGTAG
* *
3507239 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCAAGT
785 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* **
3507304 TTTTAGCTGAATTTTTTTGTACATGCCAACAAAGT
850 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * ** * *** * ** * * ** * * *** ** *
3507339 TTCAAAAAT--CGT-GA--AAAATAGAAAACGAGTCATCTTGCCATGAAACTTGACGTGAAGGCT
1 TACAAGAATCACGTCTACCAAGTTTG-GGGCAAAACACCTTTCCAAAAAATTTTA-AAAAATCCC
* ** ** ** * * * *
3507399 TAA--GGGACCA-TTGT-ATGAAT--TTACAAGCCATA-AAAATG-G--G-ATTGGCACTCAGAA
64 GAACCGCAAAAAGTT-TCAAAAATCATGA-AA--AATAGAAAATGAGTCGTCTTGCCA-T--GAA
* * ** *** ** * * *** * * *
3507453 A--T-A--TGAA-G---ATGTG-CC--TAAACCCACCTACCA-CCCTATCGATCCACGCCTTACG
122 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT---GGCATT-GG
* * *** * * * * ** * * * *
3507505 CATTCCGTCTCTCTG--GCTG-ACGTAGTGCCCGCCCACC-CGCC---CGCT-C---G-TT--TC
183 CATGCAG-AAATATGAAGATGTGCCTA-AACCCACCTACCAC-CCTATCGATCCAAGGCTTGCGC
* * * ** ** * ** * * *
3507556 AT--CG---GT-TGGCTTAGGCA-TA-TG---G--AGTTCA-TT-CCTAGTC--TAAGATCAGAC
245 ATCCCGTCTCTCTGGC-CA-GCAGTAGTGCCCGCCCGCCCACTTGTTTCGTCGGTTGGCTTAG-G
* * * *** * * ** * * * *
3507604 CAGACCGAGGGTCACGGC-AG-C-AGGATCGGCAGCACACAGAG-G--G-GGACCCGATCAATCC
307 CATACGGA-GTTCATTCCTAGTCTAAGATCAG-A-CGGACTGAGCGTTGTGGA-TC-AGC-AT-G
** * * ** * * * * * ** *
3507662 CAGCTTGCGCATCCCG-CCCCTCAGGCCAGC-TGAGCA-CCCGCACGCTCGTTTTGTGGGTTGA-
365 CAG-AGGGGGA-CCCGACCAATC--CCCGGCTTGCGCATCCCGC-C-C-C-TCTGGCCGGCTGAG
** ** ** * ***** * * *
3507723 CTTAGGCATACG-GAG-TTCATTCCCAGTC-TAAGCATACGGAGTTCATTCCCAGTCTAAGCATA
422 C--ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATA
* * * * * *
3507785 CGAAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCAGTAGCACATGCTGGG-TGC-
485 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT-CA
* * * ** * * *
3507848 GAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATGGATGGAGCACCGTCAGAGAACC
549 G-GCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACC
* * * *
3507913 TGATCGGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGCGCGA
613 TGA-CCGACGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAA
* * * *
3507977 TGGGTGCTAGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
677 TGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACC
* * * * *
3508042 CCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATGGG
742 CCCTTAAAGACCATTTGAGATTTTACAGGTTTCCTCCCCGTAGCCATTAAAGTGTCTGAAATGGG
* * *
3508107 GACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTCTTGTGC
807 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
3508172 ATGCCAACAAAAA
872 ATGCCAACAAAAA
* * * * *
3508185 TACAAGGATCACGTCTACCAAGTTTGGGACCCAAACTCC-TTCTGAAAAAATTTTAAAAAATCCC
1 TACAAGAATCACGTCTACCAAGTTTGGG-GCAAAACACCTTTC-CAAAAAATTTTAAAAAATCCC
* * * * * *
3508249 AAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCATCTTGCCATGAAACTTTAC
64 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAC
*
3508314 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGATGCAGAAAT
129 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * * * *
3508379 ATGAAGATATGCCAAAACCCACGTACCACCCTATCGATCCACGGCTTTCGCATCCCGTCTCTCTG
194 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTG
* * *
3508444 GCC-G-ACGTTGTGCCCGCCCG----CTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTC
259 GCCAGCA-GTAGTGCCCGCCCGCCCACTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * * * * *
3508503 CCAGTCTAAGATCAGACCAGACCGAAG-GATGCAGCAGCA-CAT--AGAAGGGGACCCGATCGAT
323 CTAGTCTAAGATCAGA-CGGACTG-AGCGTTG-TGGATCAGCATGCAGAGGGGGACCCGACCAAT
* * * ** *
3508564 CCCCGACTTGTGCATCCTGCCCCTCTGGCCAACTGAGCACCCGCACGCTCGTTCCGTGGGTTGAC
385 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGAC
* * *
3508629 TTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCGTTCCCAGTTTAAGATCGGACC
450 TTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * ** *
3508694 AGATCGAGTGTTGCGGTAGTACATGCTGGGCTTGGGCATGTGTTGGTGCCGCATTTTTCTTCACC
515 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGTTGGTGCCGCATTTTTCTTCGCC
* * * *** **
3508759 GAGGCGCCATCGTCGGAGCATCATTGGAGAACCTGA-CGACGGCATTGGGGTTCCGGTGATC-GG
580 GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGG
* * *
3508822 GTGGCCGGGGGAGTGTGCGCACATGATGTGCAGTGGGTGCTGGTACTTGGCCCTTATATTGGCCC
645 GGGGCCGGGGG-GTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTTGCCC
* * *
3508887 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTT
709 CCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAGGTTT
* * * *
3508952 GCTGCCAGTAGCCATTAAAGTGT-TGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGT
774 CCTCCCCGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
3509016 ACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
839 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * *
3509062 TACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAAAAATTTTAACAAATCCC
1 TACAAGAATCACGTCTACCAAGTTTGGGG-CAAAACACCTTTCC-AAAAAATTTTAAAAAATCCC
* * * ** **
3509126 AAACCG-TAAAATTTTTGAAAATTGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAC
64 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAC
* *
3509190 GTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCATTGGCACT-TAGAAA
129 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAA
*
3509254 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC-
193 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCT
** * *
3509318 GGCC-GGTGTAGTGCCCGCCCGATCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
258 GGCCAGCAGTAGTGCCCGCCCG----CCCACTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * ** ** ** * * *
3509382 ATTCC-AGTATAAGATTAGACCAAAAAGAGATTTGCGGCAGCAGGATTGGCAGCACGTAAAGGGG
319 ATTCCTAGTCTAAGATCAGA-CGGACTGAGCGTTGTGG-ATCAGCA-T----GCA-G---AGGGG
* * * ** *
3509446 GACCCGATCGATCCCCGACTTGCGCATCCTACCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTT
373 GACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTT
* *
3509511 TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--A----A-----A--C
438 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * *
3509561 ------CGGA---TA--GAGGGTTG-TGCAGCACATGCTAGGCTC-GAGCATTTGTTGGTGCCGC
503 TAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAG-GCATGTGTTGGTGCCGC
* * * ** * *
3509613 ATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCATCGAAGAACCTGACCGACGACATTGGGG-
567 ATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGT
* * * *
3509677 TCCAGGCGATC-CGGGGGCCGAGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGC
632 TCC-GACGATCAGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGC
* * * *
3509741 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGA
695 CCTTATATTTGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTGA
* * *** * * * *
3509806 GATTTTACAGGTTTGCTACCAACAGCCATTTAAGTGTCTAAAATGGGGACAGTTTTTTGAAATGG
760 GATTTTACAGGTTTCCTCCCCGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * *
3509871 TCACAAAATCTTGTACACTTCAAGTTTTTAGGTGAATTTTTGTGAGCATGCCAACAAAAA
825 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * ** * *
3509931 TTCAAGGATCACGTCTACCAACTTTGGGGCCAAAACTTCTTT-CGAAAAATTTTAAAAAATCCCA
1 TACAAGAATCACGTCTACCAAGTTTGGGG-CAAAACACCTTTCCAAAAAATTTTAAAAAATCCCG
* ** * *
3509995 AACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGTCATGAAACTTCACG
65 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACG
* ***
3510060 TGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCGCACAGAAATA
130 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* *
3510125 TGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGG
195 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGG
* * * **
3510190 TCGGC-GTAGTGCCCGCCCACCCGCCCACTCGTTTCGTCGGTTGATTTAGGCATACGGAGTTCAT
260 CCAGCAGTAGTGCCCG----CCCGCCCACTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * ** * * * * *
3510254 TCCCAGTCTAAGATCGGACCAAACCAAGGGTCGCGGTAGCAGGATCGACAGCACGCAGAGGGGGA
321 TCCTAGTCTAAGATCAGA-CGGA-C---TG-AGC-GTTG-TGGAT---CAGCATGCAGAGGGGGA
* * * * **
3510319 CCCGACCGATCCCCAGCTTGCGCATCTCACCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTC
375 CCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTC
* *
3510384 GTGGGTTGACTTAGGCATACCGAGTTCATTCCCAG--T---C-TA---AG---------A-TC-A
440 GTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * *
3510429 A-ATCGGA---TA--GAGGGTTGCAGCAGCACATGCTGGGCT-TGAGCATTTGTTGGTGCCACAT
505 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAG-GCATGTGTTGGTGCCGCAT
* * * ** * * **
3510487 TTTTCTTCGTCGGGGCACCATCACTGGAGCATCATCGAAGAACCTGACCCACGATATTGGGG-TC
569 TTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTC
* * **
3510551 CAGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATAATGTGTGATGGGTGCTGGTACTTGGCCCT
634 C-GACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCT
* * * * *
3510615 TATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACACCCTTAAAGAGCATTTGAGAT
698 TATATTTGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTGAGAT
* * *** *
3510680 TTTACAGGTTTGCTACCAACAGCCATTTAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
763 TTTACAGGTTTCCTCCCCGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
3510745 CAAAATCTTGTACATTTCGAGTTTTAAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
828 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * * * *
3510802 TACAAGGATCACGTCTACC-AGCTTTGACGCCAAAACGCC-TTCTGAAAAAATTTAAAAAAATCT
1 TACAAGAATCACGTCTACCAAG-TTTG-GGGCAAAACACCTTTC-CAAAAAATTTTAAAAAATCC
* ** ** * *
3510865 CAAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
63 CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
* * * *
3510930 CGTAAAGGCTTATGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATTGGCATGCAAAAA
128 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
3510995 TATGAA
193 TATGAA
3511001 TCCCGCCCCT
Statistics
Matches: 11880, Mismatches: 1649, Indels: 1400
0.80 0.11 0.09
Matches are distributed among these distances:
791 1 0.00
792 4 0.00
793 1 0.00
795 3 0.00
796 1 0.00
797 3 0.00
798 3 0.00
799 4 0.00
801 2 0.00
802 2 0.00
803 3 0.00
805 3 0.00
806 1 0.00
807 7 0.00
809 2 0.00
810 4 0.00
811 2 0.00
812 2 0.00
813 5 0.00
814 12 0.00
815 12 0.00
816 1 0.00
817 1 0.00
818 63 0.01
819 2 0.00
820 5 0.00
821 6 0.00
822 10 0.00
823 5 0.00
824 1 0.00
825 5 0.00
826 7 0.00
827 314 0.03
828 12 0.00
829 1 0.00
830 14 0.00
831 12 0.00
832 10 0.00
833 25 0.00
834 25 0.00
837 1 0.00
838 256 0.02
839 88 0.01
840 113 0.01
841 56 0.00
842 19 0.00
843 81 0.01
844 35 0.00
845 18 0.00
846 174 0.01
847 1 0.00
848 7 0.00
849 2 0.00
850 10 0.00
851 231 0.02
852 62 0.01
853 94 0.01
854 17 0.00
855 31 0.00
856 4 0.00
857 8 0.00
858 2 0.00
859 14 0.00
860 6 0.00
861 15 0.00
862 11 0.00
863 92 0.01
864 56 0.00
865 6 0.00
866 13 0.00
867 88 0.01
868 253 0.02
869 867 0.07
870 130 0.01
871 613 0.05
872 405 0.03
873 41 0.00
874 155 0.01
875 83 0.01
876 240 0.02
877 214 0.02
878 309 0.03
879 305 0.03
880 164 0.01
881 25 0.00
882 56 0.00
883 65 0.01
884 32 0.00
885 121 0.01
886 179 0.02
887 70 0.01
888 7 0.00
889 505 0.04
890 749 0.06
891 214 0.02
892 429 0.04
893 125 0.01
894 122 0.01
895 378 0.03
896 492 0.04
897 99 0.01
898 93 0.01
899 1056 0.09
900 282 0.02
901 16 0.00
902 3 0.00
903 233 0.02
904 279 0.02
905 263 0.02
906 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (884 bp):
TACAAGAATCACGTCTACCAAGTTTGGGGCAAAACACCTTTCCAAAAAATTTTAAAAAATCCCGA
ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGGC
CAGCAGTAGTGCCCGCCCGCCCACTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTA
GTCTAAGATCAGACGGACTGAGCGTTGTGGATCAGCATGCAGAGGGGGACCCGACCAATCCCCGG
CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
ATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
AGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCA
CCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCC
GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCC
CTCGTCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTCCTCCCC
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
Found at i:3506117 original size:26 final size:26
Alignment explanation
Indices: 3506081--3506133 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3506071 GTTGACTTAC
*
3506081 GCATACGGAGTTCATTCCTAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
* *
3506107 GCATTCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
3506133 G
1 G
3506134 ATCTGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:3506961 original size:26 final size:26
Alignment explanation
Indices: 3506910--3506962 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3506900 GTTGACTTAG
* *
3506910 GCATACAGAGTTCATTCCCGGTCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
*
3506936 GCATTCAGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
3506962 G
1 G
3506963 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:3507298 original size:827 final size:821
Alignment explanation
Indices: 3505695--3508182 Score: 3442
Period size: 827 Copynumber: 3.0 Consensus size: 821
3505685 CAAACCGCAA
* * * * *
3505695 AAAGTTTCAAAAATCTTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
1 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTGACGTGAAGGCT
* *
3505760 TAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATGCAAAAATATGAAGATG
66 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * * *
3505825 TACCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTAGCCGAC---
131 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CCGTCTCTCTGGCTGACGTA
*
3505887 GT----A---G-TGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAG
195 GTGCCCACCCGATGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAG
** * * * *
3505944 TCTAAGATCAGACCA-AGTGAGGGTTGCAGCAACAAGATCAGCAGCACGTAAAGGGGGACCTGAT
260 TCTAAGATCAGACCAGA-CCAGGGTTGCAGCAGCAGGAT-AGCAGCACGCAGAGGGGGACCTGAT
* * *
3506008 CAATCCTCGGCTTGTGCATCCCGCCCGTCTGGCTGGCTGAGCACCCGCACGCTCGTTTTGTTGGT
323 CAATCCCCGGCTTGCGCATCCCGCCCGTCTGGCTGGCTGAGCACCCGCACGCTCGTTTTGTGGGT
* ** * * *
3506073 TGACTTACGCATACGGAGTTCATTCCTAGTATAAGCATTCGGAGTTCATTCCCAGTCTAAGATCT
388 TGACTTAGGCATACGGAGTTCATTCCCGGTCTAAGCATTCAGAGTTCATTCCCAGTCTAAGATCG
* * * * *
3506138 GATCAGACCGAGAGTTGTGATAGCACATACTGGGCTCAGGCATGCGTTGGTGCCGTATTTTTCTT
453 GATCAGACTGAGAGTTGCGATAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTT
* *
3506203 CACCGGGGCACCATCGTCGGAGCATCGTCGTAGAACTTGACCGACGGTATTAGGGTTCTGGCGAT
518 CACCGGGGCACCATCGTCGGAGCATCGTCGTAGAACCTGACCGACGGCATTAGGGTTCTGGCGAT
* * *
3506268 CAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTTG
583 TAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
3506333 CCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAAG
648 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAG
* *
3506398 TTTCCTCCCCGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATAT
713 TTTGCTCCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATAT
3506463 TGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTACATGCCAAC
778 TGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTACATGCCAAC
3506507 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTGACGTGAAGGCT
1 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTGACGTGAAGGCT
3506572 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
66 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * * *
3506637 TGCCTAAATCCACCTACCACCCTATCGATCCACGGCTTGGGCGTCCAATCTCTCTGGCTGACGTA
131 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC-GTCTCTCTGGCTGACGTA
*
3506702 GTGCCCACCCGATTGCCCGCCCATCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
195 GTGCCCACCCGA-TGCCCG--C--CCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATT
* * * *
3506767 CCCAGTCTAAGATCAGA-CAGGACCACGGTTTGCAGTAGCAGGATTGCCAGCACGCAGAGGGGGA
255 CCTAGTCTAAGATCAGACCA-GACCA-GGGTTGCAGCAGCAGGATAG-CAGCACGCAGAGGGGGA
* * * *
3506831 CCTGATCAATCCCCGGCTTACGCATCCCACCCGTCTGGCTGGCTGAGCACCCGCACGCTCATTTC
317 CCTGATCAATCCCCGGCTTGCGCATCCCGCCCGTCTGGCTGGCTGAGCACCCGCACGCTCGTTTT
* *
3506896 GTGGGTTGACTTAGGCATACAGAGTTCATTCCCGGTCTAAGCATTCAGAGTTCATTCCCAGCCTA
382 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCGGTCTAAGCATTCAGAGTTCATTCCCAGTCTA
* *
3506961 AGATCGGATC-GACTGAGAGTTACGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATT
447 AGATCGGATCAGACTGAGAGTTGCGATAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATT
* *
3507025 TTTCTTCACCGGGGCACCATCGTCAGAGCATCGTCGTAGAACCTGACCGACGGCATTAAGGTTCT
512 TTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGTAGAACCTGACCGACGGCATTAGGGTTCT
* *
3507090 GGCGATTGGGGGGGCC-GGGGGTGTGCGCACATGGTGTGCGATGGGTGCTGGTACTTGGCCCTTA
577 GGCGATTAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * *
3507154 TATTGGCCCCCTATCCCTCATCGAACCCCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTT
642 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
3507219 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
707 TACAAGTTTGCTCCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
3507284 AAATATTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTACATGCCAAC
772 AAATATTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTACATGCCAAC
3507334 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTGACGTGAAGGCT
1 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTGACGTGAAGGCT
*
3507399 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGGATTGGCACT-CAGAAATATGAAGAT
66 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAATATGAAGAT
* *
3507463 GTGCCTAAACCCACCTACCACCCTATCGATCCACGCCTTACGCATTCCGTCTCTCTGGCTGACGT
130 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA-TCCGTCTCTCTGGCTGACGT
* *
3507528 AGTGCCCGCCC-A--CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCTA
194 AGTGCCCACCCGATGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTA
** * * * *
3507590 GTCTAAGATCAGACCAGACCGAGGGTCACGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGA
259 GTCTAAGATCAGACCAGACC-AGGGTTGCAGCAGCAGGAT-AGCAGCACGCAGAGGGGGACCTGA
* * * **
3507655 TCAAT-CCCAGCTTGCGCATCCCGCCCCTCAGGCCAGCTGAGCACCCGCACGCTCGTTTTGTGGG
322 TCAATCCCCGGCTTGCGCATCCCGCCCGTCTGGCTGGCTGAGCACCCGCACGCTCGTTTTGTGGG
*
3507719 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCAT
387 TTGACTTAGGCATACGGAGTTCATTCCC-G-GT---C-TA---AG--------CA-T-T---C--
*
3507784 ACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGC-AGTAGCACATGCTGGG-TG
428 A-G-AGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGAGTTGCGA-TAGCACATGCTGGGCT-
* * * ** * *
3507847 CGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATGGAT-GGAGCACCGTCAG-AGA
489 CGGGCATGTGTTGGTGCCGTATTTTTCTTCACCGGGGCACCATCG-TCGGAGCATCGTC-GTAGA
* * * * *
3507910 ACCTGATCGGACGGCATTGGGGTTCCGGCGA-TCGGGGGGCCGGGGGGTGTGCGCACATGATGCG
552 ACCTGA-CCGACGGCATTAGGGTTCTGGCGATTAGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
3507974 CGATGGGTGCTAGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
616 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
3508039 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAAT
681 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTCCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
3508104 GGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTCTTG
746 GGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
*
3508169 TGCATGCCAAC
811 TACATGCCAAC
3508180 AAA
1 AAA
3508183 AATACAAGGA
Statistics
Matches: 1490, Mismatches: 127, Indels: 84
0.88 0.07 0.05
Matches are distributed among these distances:
811 2 0.00
812 174 0.12
815 2 0.00
818 77 0.05
819 99 0.07
820 5 0.00
821 1 0.00
822 1 0.00
823 5 0.00
824 8 0.01
826 2 0.00
827 411 0.28
828 183 0.12
829 155 0.10
835 2 0.00
836 1 0.00
837 1 0.00
840 1 0.00
842 1 0.00
843 1 0.00
844 28 0.02
845 90 0.06
846 240 0.16
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (821 bp):
AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTGACGTGAAGGCT
TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCGTCTCTCTGGCTGACGTAG
TGCCCACCCGATGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGT
CTAAGATCAGACCAGACCAGGGTTGCAGCAGCAGGATAGCAGCACGCAGAGGGGGACCTGATCAA
TCCCCGGCTTGCGCATCCCGCCCGTCTGGCTGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGA
CTTAGGCATACGGAGTTCATTCCCGGTCTAAGCATTCAGAGTTCATTCCCAGTCTAAGATCGGAT
CAGACTGAGAGTTGCGATAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCAC
CGGGGCACCATCGTCGGAGCATCGTCGTAGAACCTGACCGACGGCATTAGGGTTCTGGCGATTAG
GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTT
GCTCCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGT
ACACTTCAAGTTTTTAGCTGAATTTTTTTGTACATGCCAAC
Found at i:3507764 original size:26 final size:26
Alignment explanation
Indices: 3507728--3507806 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
3507718 GTTGACTTAG
3507728 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3507754 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3507780 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3507806 G
1 G
3507807 ATCGGATCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3508662 original size:26 final size:26
Alignment explanation
Indices: 3508633--3508685 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3508623 GTTGACTTAG
*
3508633 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* * *
3508659 GCATACGGAGTTCGTTCCCAGTTTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3508685 G
1 G
3508686 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:3510723 original size:871 final size:868
Alignment explanation
Indices: 3507780--3510985 Score: 4381
Period size: 871 Copynumber: 3.7 Consensus size: 868
3507770 CCCAGTCTAA
** * *
3507780 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACT-GAGGGTTGCAGTAGCACATGCTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAAATCGGACTAGAGGGTTGCAGCAGCACATGCTGG
* * * *
3507844 G-TGCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATGGA-TGGAGCACCGTC-A
66 GCT-CGAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT-CACTGGAGCATCATCGA
* *
3507906 GAGAACCTGATCGGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGAT
129 -AGAACCTGA-CCGACGACATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGAT
* * *
3507971 GCGCGATGGGTGCTAGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* **
3508036 CACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTTCCAGTAGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAACAGCCATTAAAGTGTCTGA
* *
3508101 AATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTC
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTT
* * *
3508166 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCCAAACTCCTTCTGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCCTTCTGAA
** * * *
3508231 AAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCAT
452 AAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
*
3508296 CTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
3508361 GCATTGG-G-ATGCAGAAATATGAAGATATGCCAAAACCCACGTACCACCCTATCGATCCACGGC
582 GCATTGGCGCA--CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
3508424 TTTCGCATCCCGTCTCTCTGGCCGACGTTGTGCCCG----CCCG---CTCGTTTCGTTGGTTGGC
645 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCCTCGTTTCGTCGGTTGGC
*
3508482 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGATGC--AGCA-G--C-
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACC-AAGGATGCGGAGCAGGATCG
* * * *
3508541 ACA-TA-GAA-GGGGACCCGATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCAACTGAGCA
774 ACAGCACGAAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTACCCCTCTGGCCAGCTGAGCA
*
3508603 CCCGCACGCTCGTTCCGTGGGTTGACTTAG
839 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
3508633 GCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCGTTCCCAGTTTAAGATCGGACCAGAT
1 GCATACGAAGTTCATTCCCAGTCT----A-A--GA------T--C-----AA-ATCGGACTAGA-
* * * * * ** *
3508698 CGAGTGTTGCGGTAGTACATGCTGGGCTTGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGAGG
44 -G-G-GTTGCAGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * * * *
3508763 CGCCATC-GTCGGAGCATCATTGGAGAACCTGA-CGACGGCATTGGGGTTCCGGTGATCGGGTGG
106 CACCATCACT-GGAGCATCATCGAAGAACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGG
3508826 CCGGGGGAGTGTGCGCACATGATGTGC-AGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
170 CCGGGGG-GTGTGCGCACATGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
3508890 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCT
233 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCT
* ** *
3508955 GCCAGTAGCCATTAAAGTGT-TGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACA
298 ACCAACAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
** * *
3509019 CTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATTACGTCTACCAAG
363 CTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAC
* * *
3509084 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAACAAATCCCAAACCGT-AAAATTTTTGAAAAT
428 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAAT
* *
3509148 TGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
493 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * **
3509213 ATGAATTTACATGCCATAAAAATGGCATTGGCACTTAGAAATATGAAGATGTGCCTAAACCCACC
558 ATGAATTTACAAGCCATAAAAATGGCATTGGCGCACAGAAATATGAAGATGTGCCTAAACCCACC
*
3509278 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC-GGCCGGTGTAGTGCCCGCCCGATC
623 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-A-C
* * * *
3509342 AC-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTATAAGATTAGACCAA
686 CCGCCCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAA
* *
3509405 A--AAGAGATTTGCGGCAGCAGGATTGGCAGCACGTAAAGGGGGACCCGATCGATCCCCGACTTG
751 ACCAAG-GA--TGCGG-AGCAGGATCGACAGCACG--AAGGGGGACCCGATCGATCCCCGACTTG
*
3509468 CGCATCCTACCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
810 CGCATCCTACCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
3509527 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGA-TAGAGGGTTG-TGCAGCACATGCTAG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAAATCGGACTAGAGGGTTGCAGCAGCACATGCTGG
*
3509590 GCTCGAGCATTTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCATCGAAG
66 GCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCATCGAAG
* *
3509655 AACCTGACCGACGACATTGGGG-TCCAGGCGATCCGGGGGCCGAGGGGGTGTGCGCACATGATAT
131 AACCTGACCGACGACATTGGGGTTCC-GGCGATCGGGGGGCCG-GGGGGTGTGCGCACATGATGT
3509719 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
3509784 CACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAACAGCCATTTAAGTGTCTAAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAACAGCCATTAAAGTGTCTGAAA
* * * *
3509849 TGGGGACAGTTTTTTGAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGGTGAATTTTTGT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
* * *
3509914 GAGCATGCCAACAAAAATTCAAGGATCACGTCTACCAACTTTGGGGCCAAAACTTCTT-TCG-AA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCCTTCT-GAAA
*
3509977 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
3510042 TTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
3510107 CATTGGCGCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTG
583 CATTGGCGCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* **
3510172 CGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCACCCGCCCACTCGTTTCGTCGGTTGATTT
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCC-CTCGTTTCGTCGGTTGGCTT
* *
3510237 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCAAGGGTCGCGGTAGCAGGATCGA
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGAT-GCGG-AGCAGGATCGA
* *
3510302 CAGCACGCAGAGGGGGACCCGACCGATCCCC-AGCTTGCGCAT-CTCACCCCTCTGGCCGGCTGA
775 CAGCACG-A-AGGGGGACCCGATCGATCCCCGA-CTTGCGCATCCT-ACCCCTCTGGCCAGCTGA
**
3510365 GTGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
836 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
3510398 GCATACCG-AGTTCATTCCCAGTCTAAGATCAAATCGGA-TAGAGGGTTGCAGCAGCACATGCTG
1 GCATA-CGAAGTTCATTCCCAGTCTAAGATCAAATCGGACTAGAGGGTTGCAGCAGCACATGCTG
* * *
3510461 GGCTTGAGCATTTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCATCGAA
65 GGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCATCGAA
* * *
3510526 GAACCTGACCCACGATATTGGGG-TCCAGGCGATCGGGGGGCCGGGGGGTGTGCGCACATAATGT
130 GAACCTGACCGACGACATTGGGGTTCC-GGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGT
* *
3510590 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
3510655 CACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAACAGCCATTTAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAACAGCCATTAAAGTGTCTGAAA
* * *
3510720 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTAAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
* * ** *
3510785 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAGCTTTGACGCCAAAACGCCTTCTGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCCTTCTGAAAA
* * *
3510850 AATTTAAAAAAATCTCAAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
3510915 TGCCATGAAACTTCACGTAAAGGCTTATGGGACCATTGTATGAATTTACAAGCAATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
3510980 ATTGGC
584 ATTGGC
3510986 ATGCAAAAAT
Statistics
Matches: 2093, Mismatches: 180, Indels: 141
0.87 0.07 0.06
Matches are distributed among these distances:
853 23 0.01
857 1 0.00
858 1 0.00
860 2 0.00
866 1 0.00
867 74 0.04
868 191 0.09
869 299 0.14
870 60 0.03
871 411 0.20
872 252 0.12
873 8 0.00
874 8 0.00
875 16 0.01
876 168 0.08
877 185 0.09
878 137 0.07
879 76 0.04
880 3 0.00
881 3 0.00
882 21 0.01
883 37 0.02
885 4 0.00
886 1 0.00
887 2 0.00
889 3 0.00
890 2 0.00
891 1 0.00
893 2 0.00
894 101 0.05
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (868 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAAATCGGACTAGAGGGTTGCAGCAGCACATGCTGG
GCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCATCGAAG
AACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAACAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCCTTCTGAAAAAA
TTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCGCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGATGCGGAGCAGGATCGACAGCAC
GAAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTACCCCTCTGGCCAGCTGAGCACCCGCAC
GCTCGTTTCGTGGGTTGACTTAG
Found at i:3511092 original size:26 final size:26
Alignment explanation
Indices: 3511056--3511108 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3511046 GTTGACTTAG
3511056 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3511082 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3511108 G
1 G
3511109 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3511765 original size:26 final size:26
Alignment explanation
Indices: 3511729--3511781 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3511719 GTTGACTTAG
*
3511729 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3511755 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3511781 G
1 G
3511782 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:3512092 original size:684 final size:683
Alignment explanation
Indices: 3510398--3512358 Score: 2808
Period size: 684 Copynumber: 2.9 Consensus size: 683
3510388 GTTGACTTAG
* ** * * ** *
3510398 GCATACCGAGTTCATTCCCAGTCTAAGATCAAATCGGATAGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * ** *
3510463 CTTGAGCATTTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATC-ACTGGAGCATCATCGAAG
66 CTCGGGCATCTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTC-GGAGCATCATCG-AG
* * *
3510527 AACCTGACC--CACGATATTGGGG-TCCAGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATAAT
129 AACCTAACCGGCA-G-TATTGGGGTTCC-GACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
* *
3510588 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
** * *
3510653 CACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAACAGCCATTTAAGTGTCTGA
256 CACAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAA
* *
3510718 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-TTTCGAGTTTTAAGCTGAATTTT
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT-GAGTTTTTAGCTGAATATT
* * *
3510782 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC-AGCTTTGACGCCAAAACGCCTTCTG
384 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG-TTTGGCGCCAAAACTCCTTCCG
* * * * **
3510846 AAAAAATTTAAAAAAATCTCAAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
448 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
3510911 GTCTTGCCATGAAACTTCACGTA-AAGGCTTATGGGACCATTGTATGAATTTACAAGCAATAAAA
513 GTCTTGCCATGAAACTTCACG-AGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
3510975 ATGGCATTGGCATGCAAAAATATGAATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTTGTT
577 ATGGCATTGGCATGCAGAAATATGAATCCCACCACTCTGGCCGACTGAGCGCCCGCACGCTCGTT
3511040 TCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
642 TCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
3511082 GCATGCGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACACGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
3511147 CTCGGGCATCTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAG-A--A-C--CAA
66 CTCGGGCATCTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGAGAA
* *
3511206 ---AA-CGGCAGCATTGGGGTTCCGACGATCGGGGGAGCCGGGGGGTGTGCGCACATGATGTGCG
131 CCTAACCGGCAGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
3511267 ATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-
* * * *
3511332 CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTACTTCTAGTAGCCATTAAAGTGTCTAAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGG
* * * * *
3511397 GGACACTTTTTTCAAAAGGTAACAAAATCTTATACACTTTGATTTTTTAGCTGAATGTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATATTTTTGTG
*
3511462 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGCACCAAAACTCCTTCCGAAAAAAT
390 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGCGCCAAAACTCCTTCCGAAAAAAT
*
3511527 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAATCGTCTTGC
455 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
3511592 CATGAAACTTCACGAGAAGGCTTAAGGGACCATTGCATAAATTTACAAGCCAT-AAAATGGCATT
520 CATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * *
3511656 GGCATGCAGAAATATGAATCTCACCATTTTGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
585 GGCATGCAGAAATATGAATCCCACCACTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGAGT
3511721 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
650 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
3511755 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTACGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
3511820 CTGGGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGA
66 CTCGGGCATCTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATC-GAGA
* *
3511885 ACCTAACCGGCAGTATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGG
130 ACCTAACCGGCAGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
3511950 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
3512015 CCTGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTGTCTCAAATG
260 CC-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATG
* * *
3512080 GGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGGTGAATATTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATATTTTTGT
* * * * *
3512145 GCACGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
389 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGCGCCAAAACTCCTTCCGAAAAAA
* *
3512210 TTTTAAAAAATCCCGAAACGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
454 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * ***
3512275 CCATCAAACTTCACGTGAAGGCTTAAGGGAATGTTGTATGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
3512340 TGGCAAGCAGAAATATGAA
584 TGGCATGCAGAAATATGAA
3512359 GATGTGCCTA
Statistics
Matches: 1139, Mismatches: 116, Indels: 43
0.88 0.09 0.03
Matches are distributed among these distances:
673 224 0.20
674 371 0.33
675 8 0.01
676 1 0.00
677 3 0.00
680 3 0.00
681 1 0.00
683 5 0.00
684 494 0.43
685 29 0.03
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (683 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATCTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGAGAA
CCTAACCGGCAGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATATTTTTGTGC
ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGCGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAATCCCACCACTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGAGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:3513941 original size:855 final size:849
Alignment explanation
Indices: 3511879--3517013 Score: 5617
Period size: 855 Copynumber: 5.9 Consensus size: 849
3511869 GGAGCATCAT
* * *
3511879 CGGAGAACCTAACCGGC-AGTATTGGGGTTTCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACA
1 CGGAGAACCTGACCGGCGA-CATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACA
*
3511942 TGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
65 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
** *
3512007 AACTCACACCTGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTGT
130 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
3512072 CTCAAATGGGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGGTGAAT
195 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * *
3512137 ATTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAAATCCTTC
260 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
*
3512202 CGAAAAAATTTTAAAAAATCCCGAAA-CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
325 CGAAAAAATTTTAAAAAATCCC-AAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* ***
3512266 GTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGAATGTTGTATGAATTTACAAGCCATAA
389 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * *
3512331 AAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTATCGCCCTATCGATCCAC
454 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * **
3512396 AGCTTGCGCATCCCGTCTCTCTGG-TCGGCATAGTGCCCGCCCGCCTGCCCGCGTGCTCGTTTCA
519 GGCTTGCGCAT-CCGTCTCTCTGGCT-GGCGTAGTGCCCGCCCGCC--CCCGCCCGCTCGTTTCA
* * * **
3512460 TTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGC
580 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC-AGGGTTGCAGC
* * * *
3512525 AGCAGGATTGGTAGCACTCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTG
644 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTG
* * * * *
3512590 GCCGGTTGAGCACCCGAACGCTCGTTTCGTGAGTTGACTTAGGCATACCGAGTTCATTCCCAGTG
709 GCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * **
3512655 TAAGATTGGACTGGACCGAGGG-T-TGCAGCAGCATGCTGGGCTCGGGCATGTGCTGGTGCCACA
774 TAAGATTGGACCGGACCGAGGGTTGTGGAGCA-CATGCTGGGCTCGAGCATGTGTTGGTG-CGTA
3512718 TTTTTCTTCGTCGGGGCACCATC
837 TTTTTCTT-GTC---G------C
* * *
3512741 ATCAGAGCATCACCAGAGAACCTGACCGGCGGCATTGGGGTTCCGGCAATC------G---GGGG
1 --C---G--------GAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCAGGGG
* *
3512797 GGTGTGCGCACATGATGTGCGATGGGTACTAGTACTTGGCCCTTATATTGG-CCCCTATCCCTCA
53 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
3512861 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
118 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
3512926 CTATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGT
183 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
*
3512991 TTTTAGCTGAATTTTTTTGTGCATGCCACCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
248 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * *
3513056 CAAAACTCTTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
313 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAA
* * * *
3513121 ATAGAAAACAAGTTGTCTTGCCATGAAACTTCATGTGAACGCTTAAGGGACCATTGTATGAATTT
378 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
3513186 ACAAGCCATAAAAATGGCATTGGCATGC-GAAATATATGAAGATGTGCCTAAACACACCTACCAC
443 ACAAGCCATAAAAATGGCATTGGCACGCAG-AA-ATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * * * *
3513250 CCTATCGATCCACGACTTGCACGTCTCGTTTCTCTGGCTAGCGTAGTGCCCGCCCACCTTTCCGC
506 CCTATCGATCCACGGCTTGCGCATC-CGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCC--CCCGC
* * * *
3513315 CCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGATCGGACC
568 CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* *
3513380 ACAGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACTCGGTCGATCCCCGACTTGCGCAT
633 A-GGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCAT
* * * *** * * *
3513445 CCCGCCCCTTTGCCCAGCTGAGTGTCGGCACACTCGTTTCGTGGGTTGAATTAGGCATACGGAGT
697 CCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
3513510 TCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGAGAGCACATGCTGGGCTCGAGCATGT
762 TCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTG-GAGCACATGCTGGGCTCGAGCATGT
* *
3513575 GCTGGGGTCGTATTTTTC-T-TCGC
826 GTTGGTG-CGTATTTTTCTTGTCGC
* *
3513598 CGGAGAACCTGACCGGCGACAATGGGGTTCCGCCGATCCGGGGGGGCCAGGGGGGTGTGCGCACA
1 CGGAGAACCTGACCGGCGACATTGGGGTTCCGACGAT-CGGGGGGGCCAGGGGGGTGTGCGCACA
** *
3513663 TGATGTGCGATGGGTGCTGGTACTTGGCAATTATATTGGCCCCCTATCCCTCATCAAACCTCAAG
65 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
3513728 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCCATTAAAGTGT
130 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
3513793 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGCGTTTTTAGCTCAAT
195 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * * * ** *
3513858 TTTTTTATGTAAGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTTGGCACCAAAACTGCTTC
260 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * * * *
3513923 CGAAAGAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATTCTTGAAAAATAAAAAATGA
325 CGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGA
* * * *
3513988 GACATCTTGCCATGAAACTTCCCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAG
389 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
*
3514053 AAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
454 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
3514118 GGCTTGCGCGTCCTGTCTCTCTAGCTGGCGTAGTGCCCGCCCGTCGGCCCGCCCGCTCGTTTCGT
519 GGCTTGCGCATCC-GTCTCTCTGGCTGGCGTAGTGCCCGCCCG-C-CCCCGCCCGCTCGTTTCAT
* * * * *
3514183 CGGTTGGTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACGGAGGGTTGCGGCA
581 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC-CAGGGTTGCAGCA
* * * * *
3514248 GCAGGATCGGCAACACGTAGAGGGGGACCCGGCCGATCCCCGACTTACGAATCCCG-----C---
645 GCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGG
* *
3514305 AC-GCTGAGCACCCGCACGCTCGTTTCATGAGTTGACTTAGGCATACGAAGTTCATTCCTAGTCT
710 CCGGCTGAGCACCCGCACGCTCGTTTC----G-TG-----GG--T-TG-A---C--T--TAG---
* * ** *
3514369 AAGCATACGGAGTTCATTCCCAGTATAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTA
751 --GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGG-AGCACATGCTG
* *
3514434 GGCTTGGGCATGTGTTGGTGC-TGATTTTTTCTTCGTCGGGGCACC
813 GGCTCGAGCATGTGTTGGTGCGT-A-TTTTTCTT-GTC---G---C
* * * *
3514479 ATCGTCGAATAACCTGACCGGTGACATTGGGGTTCCGATGATCGAGGGGGCCGAGGGGGGTGTGC
1 --CG--G-AGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCC-AGGGGGGTGTGC
* *
3514544 GTACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
60 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
3514609 TCGAGAACTCATACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAA
125 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
3514674 AATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGC
190 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * *
3514739 TGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTAGGGCCAAAAAT
255 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * *
3514804 CCTACCGAAAAAATTTAAAAAAATCCCAAACCACAAAAAGCTTCAAAAATCGTGAAAAATAG-AA
320 CCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* *
3514868 ACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCT
385 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * * *
3514933 ATAAAAACGGCATTGGCACACAAAAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
450 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * *
3514998 CCATGGCTTGCGCATCCCGTTTCTCTGGCCGGTGTAGT----GCCCG--CCCGCCCGCTCGTTTC
515 CCACGGCTTGCGCAT-CCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTC
* * * * * **
3515057 TTCAGTTAGCCTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGG
579 ATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC-AGGGTTGCAG
** * ** * *
3515122 CAGCAGGATCAACAGCACGCAGAGGGGGACCC-GACGGATCCCTAACTTGTGCATCCCGCCCCAC
643 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTC-GATCCCCGACTTGCGCATCCCGCCCCTC
* * * ** *
3515186 TGGCCGGCTGAGCACTCGCTCGTTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCTAG
707 TGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* *
3515251 TCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAAATG
772 TCTAAG-AT--TG-G---A---C----C---G----GACC-G----AGGGTTGTGG-AGCACATG
*
3515316 CTGGGCTCGAGCATGTGTTGGTGCTGCATTTTTCTTTGCCGGAGCATCGC
810 CTGGGCTCGAGCATGTGTTGGTGC-GTATTTTTC-TT------G--TCGC
* * * * * * * *
3515366 CGGCGAACCTGACCGGCGGCATTAGGGTTCTGGCGATCAGGGGGGTCGGGGGGGTGTGCGCACAT
1 CGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACAT
* * *
3515431 GATGTGCAATGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGA
66 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
3515496 ACTCTCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTT
131 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
3515561 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTGGCTGATTG
196 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-
*
3515626 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTC
260 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * **
3515691 GGAAAAAATTTAAAAAAATCCCAAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAG
325 CGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* *
3515756 TCATCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
390 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
3515821 ACTGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
455 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
*
3515886 GCTTGCGCA--------TC---C---C---GT-----------CCCGCCCGCTCGTTTAATCGGT
520 GCTTGCGCATCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCATCGGT
* **
3515923 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTGCAGCAGCAG
585 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CCAGGGTTGCAGCAGCAG
* * * * * * *
3515988 GATCGACAGCATGCAAAGAGGGACCCAGCCGATCCCC-AGCTTGCGCATCCCACCCCTCTGGCCG
649 GATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCG
* * * *
3516052 ACCGAGCACCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
713 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---
* * *
3516117 CATACAGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGGGAGCACATGCTAGGC
773 C-T--A-AG---------A---T----T-GGACCGGACCGAGGGTTG-TGGAGCACATGCTGGGC
* *
3516182 TC-AGGAATGTGTTGGTGCCGCATTTTTCTTTGTCGGGTACCATCGCCGGAGCATCGC
816 TCGA-GCATGTGTTGGTG-CG----TAT-TTT-TC---T----T-------G--TCGC
*
3516239 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCAGGGGGGTGTGCGCACAT
1 CGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACAT
3516303 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATA-TGGACCCCCTATCCCTCATCAAACCTCGAG
66 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAG
*
3516367 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGT
130 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
3516432 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAT
195 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * *
3516497 TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAATGTGGGGCTAAAACTCCTTC
260 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* *** *
3516562 TGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAA
325 CGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* * * *
3516627 TCGTCTTCCCGTGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCAAAAA
390 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
** *
3516692 AATGGCATTGGTTCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
455 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
3516757 GCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--CCTGCCCACTAGTTTCATCAG
520 GCTTGCGCATC-CGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCATCGG
* ** *
3516820 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATTGAGGGTTGCAGCTGCA
584 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CCAGGGTTGCAGCAGCA
* * * * **
3516885 GGATTGGCAGCACGCAGAGAGGGACCCGATCGATCCTCGACTTGCGCATCCCG-CCCTCTGGTTG
648 GGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCG
* * *
3516949 GCTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTCCATTTCCAGTCTAAG
713 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
3517014 CATACGGAGT
Statistics
Matches: 3647, Mismatches: 421, Indels: 382
0.82 0.09 0.09
Matches are distributed among these distances:
844 31 0.01
845 1 0.00
846 19 0.01
847 1 0.00
850 1 0.00
851 3 0.00
852 1 0.00
854 52 0.01
855 432 0.12
856 102 0.03
857 2 0.00
858 1 0.00
859 26 0.01
860 211 0.06
861 5 0.00
862 2 0.00
863 2 0.00
864 6 0.00
865 14 0.00
866 347 0.10
867 332 0.09
868 6 0.00
869 39 0.01
870 5 0.00
871 252 0.07
872 285 0.08
873 50 0.01
874 2 0.00
875 35 0.01
876 119 0.03
877 1 0.00
878 1 0.00
879 1 0.00
880 14 0.00
881 202 0.06
882 145 0.04
883 140 0.04
884 152 0.04
885 95 0.03
886 317 0.09
887 1 0.00
888 2 0.00
889 3 0.00
890 1 0.00
891 2 0.00
892 1 0.00
893 2 0.00
895 1 0.00
897 61 0.02
898 120 0.03
899 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (849 bp):
CGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACAT
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
GAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTGCGCATCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCATCGGTT
GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAGGGTTGCAGCAGCAGGA
TCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCT
GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
GGACCGGACCGAGGGTTGTGGAGCACATGCTGGGCTCGAGCATGTGTTGGTGCGTATTTTTCTTG
TCGC
Found at i:3514375 original size:26 final size:26
Alignment explanation
Indices: 3514345--3514397 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3514335 GTTGACTTAG
* *
3514345 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTATAA
*
3514371 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGAAGTTCATTCCCAGTATAA
3514397 G
1 G
3514398 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTATAA
Found at i:3516120 original size:26 final size:26
Alignment explanation
Indices: 3516090--3516142 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3516080 GTTGACTTAG
*
3516090 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
3516116 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3516142 G
1 G
3516143 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3517023 original size:26 final size:26
Alignment explanation
Indices: 3516987--3517039 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3516977 GTTGACTTAG
* *
3516987 GCATACGGAGTCCATTTCCAGTCTAA
1 GCATACGGAGTCCATTCCCAATCTAA
*
3517013 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTCCATTCCCAATCTAA
3517039 G
1 G
3517040 ATCAAACGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAATCTAA
Found at i:3520123 original size:26 final size:26
Alignment explanation
Indices: 3520087--3520139 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3520077 GTTGACTTAG
3520087 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3520113 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3520139 G
1 G
3520140 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3521026 original size:26 final size:26
Alignment explanation
Indices: 3520990--3521042 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3520980 GTTGACTTGG
* *
3520990 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
3521016 GCATACAGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3521042 G
1 G
3521043 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3521695 original size:900 final size:893
Alignment explanation
Indices: 3519219--3534274 Score: 14929
Period size: 900 Copynumber: 16.8 Consensus size: 893
3519209 GTTGACTTAG
* * * *
3519219 GCATACGGAGTTCATTCCCAGTCT---AT--GATCAGACTGAGGGTTACGGCAGCACATGCAGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
3519279 CTTGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTTGTAGCATCGTCGGAGA
66 C-TCGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * *
3519344 ACCCGACTCGACGGCATTGGGGTTCCGACGATCGGGGGGGCTGAGGGGGGTCTGCGCACATGATG
130 ACCTGAC-CGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGA-AGGGGTGTGCGCACATGATG
* * *
3519409 TGTGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
** * * * *
3519474 ACATACCCTTAAAGAGCATTTAATATTTTACAGGTTTGCTA-CAAGTAGCCATTAACGTGTTTGA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAA-TAGCCATTAAAGTGTCTGA
3519538 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
3519603 TTGTGCATGCCAA-AAAAAAACAATAGGATCATGTCTACCAAGTTTGGGGACAAAACTCCTACCG
386 TTGTGCATGCCAACAAAAATAC-A-AGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCG
* * * * *
3519667 AAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTC
449 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAG-TTTCAAAATCGTGAAAAATAGAAAACGAGTC
*
3519732 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAA
513 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * **
3519797 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACAAC
578 TGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
3519862 TTGCGCATCCCGTCTCTCTAGTCGACGTA-ATGCCCGCCCGCC-CGCTCATTTCGTCGGTTGGCT
643 TTGCGCATCCCGTCTCTCTGGCCGACGTAGA-GCCCGCCCGCCTCGCTCGTTTCGTCGGTTGGCT
* * * * * * *
3519925 TAGGCATACGAAGTTAATTCCCAGTCTAAGATCAGATCGGACTGATGGTTGCAGTAGCAGGACCG
707 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAAGATCG
* * * * *
3519990 GCAGCATGCAGAGGGGGACCCGATCGATCCCCGACTTTCACATCCCTCCCCTCTGGCCGGCTGAG
772 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTACACATCCCACCCCTCTGGCCGACTGAG
*
3520055 CGCCCGCACGCTCGTTTT-GTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 CGCCC-CACGCTC-TTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
3520113 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTACAGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
** * * *
3520178 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCGCCGAAGA
66 CTCG-GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* **
3520243 ACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGAAGGGGTGTGCGCACATGATGTG
* *
3520308 CGATGGGTGCTCGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
3520373 ACCCCTTTAAAGTGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAAT
* *
3520438 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGA-ACACTTCCAGTTTTTAGCTGAATTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTT-ATACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
3520502 GTGCATGCCAACAAAAATACAAGGATCATGCCCACCAAGTTCGGAGCCAAAACTCCTTTCAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCGAAAA
* *
3520567 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTCAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * **
3520632 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAGATGTT
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
3520697 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAAT-CACGGCTTG
582 ATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG-ATCCACGGCTTG
* *
3520761 CGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCAGCCCGCCCACTCGCTCGTTTCGTCGGTTG
646 CGCATCCCGTCTCTCTGGCCGACGTAGAG--C-CC-GCCCG--C-CTCGCTCGTTTCGTCGGTTG
* * * * *
3520826 GCTTAGGCATACGGAGTTCATTGCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAAGA
704 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAAGA
* * * * * * * * **
3520891 TTGGCAACACGCAGTGGGGGACCCGACCGATCCTCGACTTCCGCATCCCGCCCCTCTGGGCGGTT
769 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTACACATCCCACCCCTCTGGCCGACT
* * * *
3520956 GAGCACCCCATGCTCTTTTCGTGGGTTGACTTGGGCATACGGAGTTCATTCCTAGTCTAA
834 GAGCGCCCCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
3521016 GCATACAGAGTTCTTTCCCAGTCTAAGATCGGACC-GAACCGAGGGTTGCGGTAGCTCATGCTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTACGGCAGCACATGCTGG
** *
3521080 GCTCTGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAT
65 GCTC-GGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
*
3521145 AACCTGACTGGCGGCATTGGGGTTCCGACGATCGGAGGGG-C-AAGGGGTGTGCGCACATGATGT
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCGAAGGGGTGTGCGCACATGATGT
* * *
3521208 GAGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACGTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
3521273 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTTAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAA
* *
3521338 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
3521403 GTGCATGCCAACAAAAATATAGGGATCACGTCTA-CAAGTTCAGGGCCAAAACTCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCGAAAA
** * *
3521467 AATTTTAAAAAATCTTGAACTGTAAAAAGTTTCAAAACTCGTGAAAAATAGAAAACAAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA-TCGTGAAAAATAGAAAACGAGTCGTCT
* * *
3521532 TGCCATGAGACTTCACGTGAAGGCGTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
3521597 ATTGGAATGCAGAAATATGAAGATGTGTCTAAACCCACCTACCATCCTATCGATGCACGGCTTGC
582 ATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * **
3521662 ACATCTCGTCTCTCTGGCCGGTGTAGAGCCCGCCCG--T---TCGTTTCGTCGGTTGGCTTAGGC
647 GCATCCCGTCTCTCTGGCCGACGTAGAGCCCGCCCGCCTCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * *
3521722 ATACGGAGTTCAATCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGTAGTAGGATCGGTAGC
712 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAAGATCGGCAGC
* ** * ** *
3521787 ATGCAGAGGGGGACCCGATTGATCCCCGGCTTATGCATCCCACCCCTCTGGCCGACTGAGCGGTC
777 ACGCAGAGGGGGACCCGACCGATCCCCGACTTACACATCCCACCCCTCTGGCCGACTGAGC-GCC
* * * * * * *
3521852 GCACGCTCATTCCATGGGTTGACTCAAGCATACGGAGTTCATTCCTAGTCTAA
841 CCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * *
3521905 GCATATGGAGTTCACTCCCAGTCTAAGATCAGAGC-GAACCAAGGGTTACGGCAGCACATGCTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTACGGCAGCACATGCTGG
** ** * *
3521969 GCTCGGACATGTGCTGGTGCCGTATTTTTCTTCCCCGGGGCACCATCGTCGGGGCATCGTCGAAG
65 GCTCGG-CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * *
3522034 AACCAGACCGGCGACATTGGGGTTCC-AGCGAT-GGGGGTGCCGAA-GGGTGTGCGCACATGATA
129 AACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGG-GCCGAAGGGGTGTGCGCACATGATG
*
3522096 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
3522161 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAA
* *
3522226 ATGGGGACACTTTTTTCAAATAGTCACAAAATCTTATACACTTTGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * * *
3522291 TATGCACGCCGACAAAAATACAATGATCACGTCTACCAAGTTTGGGGCCAAAACACATTCTGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCGAAA
* * * * * * *
3522356 AATTTTTAAAACATCTCGAAACGTAAAAAGTTTCCACAATCGTGAAAAATAAAAAACGAGTTGTC
452 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTT-CAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * *
3522421 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATCAATTTACAAGCAATAAAAAAGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
3522486 CATTGGAA-CCTAGAAACATGAAGATGTGACTAAACCAACCTACCACCCTATCGATCCACGGCTT
581 CATTGGAATGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
3522550 ACGCATCCCGTCTCTCTGGCCGAGGTAGTGCTTGCCCGCCTGCTCGCCCGCCCGCTCGTTTCGTC
645 GCGCATCCCGTCTCTCTGGCCGACGTA--G--AGCCCG-C--C-CG--C-CTCGCTCGTTTCGTC
* * ** *
3522615 CGTCGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCGGTAG
699 GGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAG
* * * * * *
3522680 CAAGAT-TGCAGCACACAGAGGGGGACCCGACCGATCCCCGCCTTGCACATCCTACCCCTCTGGT
764 CAAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTACACATCCCACCCCTCTGGC
* * * *
3522744 CGACTGAGCGCCTGCACACTCGTGTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
829 CGACTGAGCGCC-CCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
3522809 A
893 A
* * **
3522810 GCATACAAAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTACGGCAGCACATGCTACG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * ** * *
3522875 CTCGGGCAGGTGCTAGTGCGGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGA
66 CTC-GGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
3522940 ACCTGACCGGCGGCATTGGGGTTCGGGCGATCGGGGGGTCGAAGGGGTGTGCGCACATCATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGAAGGGGTGTGCGCACATGATGTGC
3523005 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * ** * ** * * *
3523070 CCCTCTTAAAGAGAATTTGAGATTTTTTTCA--AATGGT-CACAA-AAACTTGTACACT-TC-G-
260 CCCCCTTAAAGAGCATTTGAGA--TTTTACAGGTTTGCTAC-CAATAGCCAT-TAAAGTGTCTGA
* **** * * * *** ** *
3523128 AGTTTTTAGCTAAATTTTTTC--GTGCATGC-CAAAA-AAAATACAAGGATC-ACG--TCTA-C-
321 AATGGGGA-C--ACTTTTTTCAAATG-GT-CACAAAATCTTATAC-A-CTTCGA-GTTTTTAGCT
* * *** * ** * **
3523184 CAAGTTTGGGGT-CAAAACTCCTTCGAA-AAAAATTTTA-AAAAATCACGAACCGTAAAAAGTT-
378 GAATTTTTTTGTGC---A-TGC--C-AACAAAAA---TACAAGGATCACG--TC-TACCAAGTTC
* * * ** * * *** * * *
3523245 ----TCAAAA---ATTACG-AAAAA-TAGAAAATGAGTCGTCTTGCCAT-GAAA-CTTC---A-C
430 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA--AATC-CCGAACCGTAAAAAGTTTCAAAATC
*** * * * * * * *
3523295 GTGAAGGCT---TAA-GGGAC--CATTG-TATG-AA-TTTAC---AAGCCATAAAAATGGTATTG
492 GTGAAAAATAGAAAACGAGTCGTC-TTGCCATGAAACTTCACGTGAAGGC-T--TAA-GG----G
* * ** * * * * *
3523348 ACACATAGAAATATGAAGATGTGCCTA-AACCCACCT-ACCA--CCCTCTCG-ATCCACG-ACT-
548 AC-CATTG---TATG-A-AT-T---TACAAGCCA--TAAAAATGGCAT-TGGAATGCA-GAAATA
* **** * * *** * * **
3523406 TG-CGCATCCCGT-CTCTCTGGTCGACGTAGTTCCAACCCGCCCG--CC-C-GCTCGCTCATTTC
599 TGAAG-AT---GTGC-CT-AAACCCACCTA---CC-ACCCTATCGATCCACGGCTTGCGCATCCC
** * * * *** * * * * * ** * *
3523465 GTCGGT-TGGCTAAGGCATACAGAGTTCATTCCAAGTCTAAGATCATACCAGACCGAGTGTTGC-
654 GTCTCTCTGGC--CGACGT--AGAG--CCCGCC-CGCCT-CGCTCGTTTC-G-TCG-GT-TGGCT
* * * ** ** * * * *** *
3523528 -A-GCA-GC-AGGATC-TGTAGCATGTAAAAGA--GGACCCGATCGA-TCCT-CGGCTTGC--GC
707 TAGGCATACGAAGTTCAT-TCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGCGG-TAGCAAG-
***** *** ** * ** **
3523582 ATC--C--CAC-C-CCTCTGG--CCGGTTGAT---CG-C-T-CGTATGCTCA--TTTCGTGGGTT
768 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTACACAT-CCCACCCCTC-T-GGCC
* ** *** ** *
3523631 GACTTAG-G-CATACGGAGTTCATTC-TCAG-T--C-TAAGCATACGGAGTTCATTCCCAGTCTA
830 GACTGAGCGCCCCACGCTCTT--TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
3523689 A
893 A
* * **** **
3523690 G-AT-C--AG---A---CCAGAC--CG---AGGGTTG--CGA----TA-GATAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* ** * *
3523733 CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCATCAGGGGCACCATCGTCGGAGCATCGTTGGAG
66 CTC-GGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCGGAG
* * * * **
3523798 AACCTGACCGGTGGTATTGGGGTTCCGATGATCGGAGGGACCGGGGGGGTGTGCGCACATGATGT
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCGAAGGGGTGTGCGCACATGATGT
* * * * *
3523863 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCTTCATCAAACCTCTACAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
3523928 CACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAA
*
3523993 TGGGGACACTTTTTTCAAATGGTCACAAAAT-TTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAA-TTTTTT
* * * *
3524057 TGTGCATGCCTACAAAAATACAAGGATCACGTCTACCAAATTTGGGG-CAAAACTCCTTCTGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCGAAA
* * * *
3524121 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC
452 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTC
*
3524186 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * * *
3524251 CATTGGCATGCAAAAATATGAAGATGTACCTAAAACCACCTACCACTCTATCGATGCACGACTTG
581 CATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
3524316 CGCATCCCGTCTCTCTGGCCGATGTAGTGTCGGCCCGCCGGCC-CGCTCGTTTCGTCGGTTGGCT
646 CGCATCCCGTCTCTCTGGCCGACGTA--G--AGCCCGCCCGCCTCGCTCGTTTCGTCGGTTGGCT
* * * * * * * * *
3524380 TAGGCATATGGAGTTCATTTCCAGTCTAAGATCAGACCAGAACAAGGGTTGCGGCAGCAGGATTG
707 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAAGATCG
* * * * * * * * **
3524445 GCAACACGCAAAGGGGGACCC-AGTCGATCCCTGACTTGCGCATCCCGCCCTTCTGGCCGGTTGA
772 GCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGACTTACACATCCCACCCCTCTGGCCGACTGA
* * *
3524509 GCACCCGCACGCT-TGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCGAA
836 GCGCCC-CACGCTCT-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
3524568 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAATCGGACCGAGGGTTGCGACAGCACATACTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTACGGCAGCACATGCTGG
* **
3524632 GCTCGGGCATGTGCTGGTGCCACTTTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAG
65 GCTC-GGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
*
3524697 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCG--GGGGATGTGCGCACATGATG
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGAAGGGG-TGTGCGCACATGATG
*** *
3524760 TGCGATGGGTGCTGGTACCCAGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
3524825 ACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAA
* * * *
3524890 ATGGGAACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
3524955 TGTGCAAGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCGAAA
* * *
3525020 AAATTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA-AAAATCGAGTCAT
452 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAATCGTGAAAAATAGAAAA-CGAGTCGT
*
3525084 CTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * **
3525149 GCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCTTGGCTT
580 GCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
3525214 -CGCATCCCG--TCTCTGGCCGACGTAGTGCCAGCTTGCCCGCCCGCC-CGCTCGTTTCGTCGGT
645 GCGCATCCCGTCTCTCTGGCCGACGTA--G--A----GCCCGCCCGCCTCGCTCGTTTCGTCGGT
* ** * * * *
3525275 TGGCTTAGGCATACGGAGTTCATTCTTAGTCTAAGATCAGATCAGACTGAGGGTTGCAGTAG-AC
702 TGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCA-
* * * ** * * * *
3525339 GGATCAGCAGCACACAGAGGGGGACCCGACCGATCCCCGGGTTGCGCATCCCGCCCCTCTGGTCG
766 AGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTACACATCCCACCCCTCTGGCCG
* * * * * *
3525404 ACTGAGCACCTGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTACCAGTCTAA
831 ACTGAGCGCC-CCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
3525468 GCATACAGAGTTCATTGCCAGTCTAAGATC-GAACCAGATCGAGGGTTACGGCAGTACATGCTAG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTACGGCAGCACATGCTGG
** * * ** * *
3525532 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACTATCACCGAAGCATCATCGGAG
65 GCTC-GGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * *
3525597 AACCTGACCGACGGCATTGGTGTTCCGGCGATCGGGGGGGCCG-GGTGGGTGTGCGCACATGATG
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGAAG-GGGTGTGCGCACATGATG
* * * * *
3525661 TGCGAAGGGTGCTGGTACTTGGCCATTATATTAGCCTCCTATCCCTCATCAAACATCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * *
3525726 ACACCCCCTTAAAGAGCATTTGAGATTGTACTGGTTTGCTGCCAGTAGCCATCAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAA
* * *
3525791 ATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTT
** *
3525856 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAC-CCTTTCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCGAAA
* * * *
3525920 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAAGGAGTCATC
452 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTC
** *
3525985 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGATGATTGCATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
3526050 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACAGCTTG
581 CATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
3526115 CGCATCTCGCCTCTCTGCCCGACGTACTGCCCGCTCGCCCGCCT-GCTCGTTTCGTCGGTTGGCT
646 CGCATCCCGTCTCTCTGGCCGACGTA--G--AGCCCGCCCGCCTCGCTCGTTTCGTCGGTTGGCT
* * * * ** * * ** ** * *
3526179 TAGGCATACGGAA-TTCATTCCTAGTCTAAGACCGGATCAAATCAAGGGTTTTGACAGCAGGATT
707 TAGGCATAC-GAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAAGATC
* * * * * * *
3526243 GGCAGCACGCAGAGGGGGTCCTGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGA
771 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTACACATCCCACCCCTCTGGCCGACTGA
* * * *
3526308 GCGCCCGCTCGCTCGTTTCATGGGTTGACTTGGGCATACGGAGTTCATTCCCAGTCTAA
836 GCGCCC-CACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * *** ** *
3526367 GCATATGGAGTTCATTCCTAGTCTAAGATCGGACCGGGAAAAAAGGGTTACGATAGCATATGCTG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACC-AG-ACCGAGGGTTACGGCAGCACATGCTG
** ** * *
3526432 GGCTCGGGCATGTGCTGGTGCGGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCG-CTAG
64 GGCTC-GGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-GG
* * * * ** *
3526496 AGAACCTAACCGGCGGCATTGGGGTTCTGGCGATCGAGGGTGCCGGGGGGGTGTGTGCACATGAT
127 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGAAGGGGTGTGCGCACATGAT
* ** * *
3526561 GTG-TACTGGGTGCTGGGGCTTGGCCCTTATACTAGCCCCCTATCCCTCATCAAACCTCGAGAAC
191 GTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * *
3526625 TCAC-CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTG-TCGCCAGTAGCCATTAATGTGTCT
255 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-ACCAATAGCCATTAAAGTGTCT
*
3526688 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TT
319 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTT
* * * * *
3526752 TTTTGTGCATGCCAAAAAAAATACAAGGATCACCTCTACCATGTTTGGGTCCAAAACTCCTTCCG
384 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCG
** * * * *
3526817 AAAAAATTTTAAAAAATGTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTC
449 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTC
* *
3526882 GTCTTGCCATGAGACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAA
513 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * *
3526947 TGGTATTGGCACGTAGAAATATGTAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
578 TGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
3527012 TTGCGCATCCCCTCTCTTTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCTCGCTCGTTTCGTCTG
643 TTGCGCATCCCGTCTCTCTGGCCGACGTAGAG--C-CC-GCCCG--C-CTCGCTCGTTTCGTCGG
* **
3527077 TTGGCTTAGGCATAC-AGAGTTCATTCCCAGTCTAATATCAGACTAGACCGAGGGTTGCGGTAGC
701 TTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGC
* * ** * * * * * * *
3527141 AGGATCGACAGCACATAGAGGAGGACTCGGCTGATCCTCGACTTGCGCATCCCACCCCTCTGGCC
765 AAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTACACATCCCACCCCTCTGGCC
* ** *
3527206 GGA-TGAGCGCCCGCACGTTAATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
830 -GACTGAGCGCCC-CACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
3527270 A
893 A
* * ** * **
3527271 CCATACAGAATTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCCACAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * ** * *
3527336 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATC-ACTGGAGCATCGCCGGAG
66 CTC-GGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGTCGGAG
* * * ** * *
3527400 AACCTGATCGGCGCCATTGAGGTTCCGGTGATCGAGGGGCCCG--TGGG-GTGCGCACATGATGT
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGAAGGGGTGTGCGCACATGATGT
* *
3527462 GCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
3527527 CACCCCTTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGACTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAA
* **
3527592 T-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGCTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** * ** * *
3527656 ATATATGCCCAA-AAAAATACAGGGATCACGTCTACCAAGTTTAGGGCCAAAACACCTTTCGAAA
388 GTGCATG-CCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCG-AA
* * * * *
3527720 AAAATTTTAAAAACTCCCGAACCGCAAAAATTTTCAAAAATTGTGAAAAATAAAAAACGAGTCGT
451 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGT
* *
3527785 CTTGCCATGAAACTTCACATGAAGGCTTAAGTGACCATTGTATGAA-TT--------T----A--
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
3527835 -C----G--T--AGAAATATGAAGATGTGCCTAAACCCACCTATCA-CCTATCGATCCACGGCTT
580 GCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*** * * *
3527890 GTAAATCCCGTCTCTCTAGTCGACGTAGTGCCCGCCCGCC-CGCTTC-TTTCGTCGGTTGGCTTA
645 GCGCATCCCGTCTCTCTGGCCGACGTAGAGCCCGCCCGCCTCGC-TCGTTTCGTCGGTTGGCTTA
* * ** * * * *
3527953 GGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTAGACCGAGGGTTACAGTAGTAGGATCGGC
709 GGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAAGATCGGC
* * * * * * *
3528018 AGCACGCAGAGGGGGACCCGATCAATCCGCGACTTGCGCATCCCACCCCTTTGGCCGGCTGAGCG
774 AGCACGCAGAGGGGGACCCGACCGATCCCCGACTTACACATCCCACCCCTCTGGCCGACTGAGCG
* * * *
3528083 CCCGCACGCTCGTTCCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
839 CCC-CACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** ** * ** * * *
3528139 GCATATGGAGTTCATTCAAAGTCTAAAATTGGACCGGACCGAGGGTTGCGGCATCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
3528204 CTTGGGCCTGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCG-CTGGAGCATCGCCGGAG
66 C-TCGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGTCGGAG
* * * * *
3528268 AACTTGACCGACGGCATTGGGGTTCC-AGCGATTGGGGGGGCCG--GGGG-GTGCACACATCATG
129 AACCTGACCGGCGGCATTGGGGTTCCGA-CGA-TCGGGGGGCCGAAGGGGTGTGCGCACATGATG
*
3528329 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * *
3528394 ACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTTTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAA
* * **
3528459 ATCGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGATCGAGCTTTTT-GCTGAATTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAG-TTTTTAGCTGAATTTTT
* * *
3528523 TTGTGCTTGCCAACAAAAATACAAGGATC-C-TCCTACTAAGTTTGGGGCCAAAACTCCTTCCGA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGT-CTACCAAGTTCGGGGCCAAAACTCCTTCCGA
* * * *
3528586 AAAAATTTTAAAAAATCCTGAACCGTAAAAGGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCG
450 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCG
*
3528651 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAAT
514 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * * *
3528716 GGCATTGGCATGTAGAAATTTAAAGATGTGCCTAAACCCACGTACCACCCTATCGATCCATGGCT
579 GGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * *
3528781 TACG-ATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCTGCCCGCCCAACCACTCATTTCATCGGT
644 TGCGCATCCCGTCTCTCTGGCCGACGTAGAG--C-CC-GCCCG-CC--TCGCTCGTTTCGTCGGT
** * * * * * * *
3528845 TGGCTTAGGTGTATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGTGGCAGCAG
702 TGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAA
* * ** * * * * * * *
3528910 GATCGGTAGCACGCAGAGGGGTACCCGATTGATCCCCGGCTTGCGCATCTCGCCCCTTTGGCCGG
767 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTACACATCCCACCCCTCTGGCCGA
* * * * * * *
3528975 TTGAGTGCCCGTATGCTCGTTTCGTGGGTTAACTTAGGCATAGGGAGTTCATTCCCAGTCTAA
832 CTGAGCGCCC-CACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *** ** *
3529038 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGATTGAGGGTTACGGTAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
3529103 CTCGGGCATGTGCTGATGTCGCATTTTTCTTCGTCGGGGC-CCA---T-----CA---TCGGAGA
66 CTC-GGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* ** * * ** * *
3529156 ACCTGACCGACGGCATTATGGTTTCGACGATTGGGGGGGCCGGGGGGGTGTGCACAAATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGA-TCGGGGGGCCGAAGGGGTGTGCGCACATGATGTG
* *
3529221 CGATGGGTGCTGGTACTTGCCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
** * *
3529286 ACCCCCTTAAAGAGCATTTGAGATTTTGTAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAAT
* * * *
3529351 GGGGACACATTTTTCAGATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTG
* **
3529416 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
3529481 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATTGTGAAAAATAAAAAATGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAG-TTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
3529546 GCCATGAAACTTCACTTGAAGGCTTAAGGGACAATTGTATGAGTTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
3529611 TTGGCACAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
583 TTGG-A-ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * **
3529674 CGCATCCCGTCTCTGTGGCCGGCGTAGTGCCCGCCCACC-CGCTTGTTTCGTCAATTGGCTTAGG
646 CGCATCCCGTCTCTCTGGCCGACGTAGAGCCCGCCCGCCTCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * * *
3529738 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGTGGCAGCAGGATTGACAG
711 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAAGATCGGCAG
** * * * * * *
3529803 CACGCAGAAGGGGGACCC-AGTTGATCCGCGGCTTGC-CATCCCGCCCCTCTGGTCGGCTGAGCG
776 CACGCAG-AGGGGGACCCGA-CCGATCCCCGACTTACACATCCCACCCCTCTGGCCGACTGAGCG
* * * *
3529866 CCCGCACGCTCGTTTCGTAGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAA
839 CCC-CACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
3529922 GCATACGGAGTTCATTCCTAATCTAAGATCAGACCAGATCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * ** * *
3529987 CTCGGGCATGTGCTGGTGCCGCATTTTTCCTCACCGAGGCACCATCGTCAGAGCATCGTCGGAGA
66 CTC-GGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * **
3530052 ACTTGACCGGCGGCATTAGGGATCCGACAATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGAAGGGGTGTGCGCACATGATGTG
* * * * * *
3530117 GGATGGGTGCTGGTACTTGGCCCTCATATTGGGCCCCTATCCCTCATCAAACATCAAGAACTCAG
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
3530182 ACCCCCTTAAAGAGCATTTGAGAATTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAAT
* * * *
3530247 CGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTCTAGCTGAATTTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAA--TTTTTT
* * * * ****
3530311 TTTGCTTGCCAACAAAAATACAAGGATCATGTCTACTAAGTTTACAGCCAAAACTCCTTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCGAAA
* *
3530376 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCTAAAATCGTGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTC
3530441 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * * *
3530506 CATTGGCATGTAGAAATATAAAGATGTGCCTATACCCACCTACAATCCTATCGATCCACGGCCTG
581 CATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
3530571 CGCATCCCGTCTCTCTGGTCGACGTAGTGCCTGCCCGTCCGCCTGGTCGCTCGTTTCGTCGGTTG
646 CGCATCCCGTCTCTCTGGCCGACGTA--G--AGCCCGCCCGCC---TCGCTCGTTTCGTCGGTTG
* * ** * * * * * * *
3530636 GCTTAGGCATACGGAGTTAATTCAATAGTCTAAGATCGGACAGAACTGAGGGTTGTGGCAGCAGG
704 GCTTAGGCATACGAAGTTCATTC-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAAG
* * * * * * ** **
3530701 ATCGGTAGCACGTAGAGGGGGACCCGGCCGATCCTCGGCTTGCACATCCCGGCCCTCTGGCCGGT
768 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTACACATCCCACCCCTCTGGCCGAC
* * * *
3530766 TGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACCGAGTTCATTCCCAGTCTAA
833 TGAGCGCC-CCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * *
3530828 GCATACAGAGTTCATTCTCAGTCTAAGATCGGA-TTGAACCGAGGTTTGCAGTAGCACATGCTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTACGGCAGCACATGCTGG
* ** * * * * * *
3530892 GCTTGGGCATGTGCTGGTATCGCATTTTTCTTCGCCAGGGCACCATCGCCGGGGCATCGCCGGAG
65 GC-TCGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * * *
3530957 AACCTGACCGGCGGCACTAGGGTTTCGGC-ATTCGGGGGGGGCCG-GGGGGTGTGCGCACATGAT
129 AACCTGACCGGCGGCATTGGGGTTCCGACGA-TC--GGGGGGCCGAAGGGGTGTGCGCACATGAT
* *
3531020 TTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * * * *
3531085 CACACCCCTTTAAAGAGCATCTCAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGA
*
3531150 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTT
* * * * ***
3531215 TTATGCATGACAACAAAAATACAAGGATCATGTCTACCTAGGTT-TTAGCCAAAACTCCTTCCGA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC-AAGTTCGGGGCCAAAACTCCTTCCGA
* *
3531279 AAAAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
450 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCG
*
3531343 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAAT
514 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
3531408 AGCATTGGCATGCA-AAATAGGAAGATGTGCCTAAACCAACCTACAACCCTATCGATCCACGGCT
579 GGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * ** * *
3531472 TGCGCATCCCGTCTCTCTGGCCGACGCAGTGCCCGCCTGCC-CGCTCATTTCGTCCATTAGCATA
644 TGCGCATCCCGTCTCTCTGGCCGACGTAGAGCCCGCCCGCCTCGCTCGTTTCGTCGGTTGGCTTA
* ** * * ** * * *
3531536 GGCATACGGAGTTCATTCCCAGTCTAA-ATCAGACTAGACCAAGGGTTACGACAACAAGATTGAC
709 GGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAAGATCGGC
* * * * * *
3531600 AGCACGCAAAGAGGGACCC-AGCCGATCCCTGACTTACGCATCCCGCCCTTCTGGCCGACTGAGC
774 AGCACGCAGAGGGGGACCCGA-CCGATCCCCGACTTACACATCCCACCCCTCTGGCCGACTGAGC
* * *
3531664 GCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCGCAGTCTAA
838 GCC-CCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * *
3531721 GCATAC-GAAGTTCATTCCCAGTCTAATATCGGACCAGACTGAGGGTTGTGACAGCACATGCTAG
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGG
* * ** **
3531785 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGCCTGGGCACCATCACCGGAGCATCACCGGAG
65 GCTCG-GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * ** *
3531850 AACCCGACCGGTGGCATTGGTGTTCCGGTGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATG
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGA-AGGGGTGTGCGCACATGATG
* *
3531915 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTTATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
3531980 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCAAGTAGCTATGAAAGTGTCTGA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAA-TAGCCATTAAAGTGTCTGA
* * *
3532044 AATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTT
* * *
3532109 TTGTGCAT-CACAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCCA
386 TTGTGCATGC-CAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCGA
* * * *
3532173 AAAAA-TTTAAAAAATCCTGAACGGTAAAAAGTTTTGAGAATCGTGAAAAATA-AAGAACGAGTC
450 AAAAATTTTAAAAAATCCCGAACCGTAAAAAG-TTTCAAAATCGTGAAAAATAGAA-AACGAGTC
*
3532236 GTCTTGCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAA
513 GTCTTG-CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
3532301 ATGGCATTGGCATGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
577 ATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
3532366 CTTGCGCATCCCATCTCTCTGGCCGACGCAGTGCCCGCCCGCCCGCCCACCCGCCTGCTTTTTTC
642 CTTGCGCATCCCGTCTCTCTGGCCGACGTA--G--AGCCCGCCCG--C-CTCG-CT-C--GTTTC
* * * * * * *
3532431 GTCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCGAACCGAGGGTTACAG
696 GTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGG
* * * * * ** * * * *
3532496 TAGCAGGATCAGCAGCATGTAGAGGGAGACCCGGTCGATCCCCGGCTTTCGCATCCCGCCCCTCT
761 TAGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTACACATCCCACCCCTCT
* * * * * * * *
3532561 AGCTGACTGATCGCCCGCACACTCGTCTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGT
826 GGCCGACTGAGCGCCC-CACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
3532626 CTAA
890 CTAA
** * * * ** *
3532630 GCATACAGAGTTCATTCCCAGTCTGGGATCGGATCAAACCGAGGGTTGTGGCAGGACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
** * ** ** *
3532695 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCACCGGAGCATCACCGGGGA
66 CTC-GGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
** * * *
3532760 ACCTGATAGGTGGAATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGAAGGGGTGTGCGCACATGATGTG
* *
3532824 CGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
3532889 ACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAAT
*
3532954 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** * **
3533019 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGGTTTTAGTG--AAAACTCCTTCTAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-G-TTCGGGGCCAAAACTCCTTCCGAAA
* * *
3533082 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
3533147 TTGCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
3533212 CATT-GACATGTAGAAATATGAAGATGTGCGTAAACCCACTTACCACCCTATCGATCCACGGCTT
581 CATTGGA-ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * *
3533276 GCGCATCCAGTCTCTCTGGTCGGCGTAGTGCCTGCCTGCC-CGCTCGTTTCGTCTGTTGGCTTAG
645 GCGCATCCCGTCTCTCTGGCCGACGTAGAGCCCGCCCGCCTCGCTCGTTTCGTCGGTTGGCTTAG
* * * ** * ** *
3533340 GCATATGGAGTTCATTCCCAATCTAAGATTGGACCGGACCAAGGGTTATGGTAGCAAGATCGACA
710 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAAGATCGGCA
* * ** * * * * ** *
3533405 GCACGCAAAGGGGGACCTGGTCGATCCCCGACTTGCGCATCCCACCCCTCTAGCTGGTTGAGTGC
775 GCACGCAGAGGGGGACCCGACCGATCCCCGACTTACACATCCCACCCCTCTGGCCGACTGAGCGC
* * * **
3533470 CCGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTTGCAGTCTAA
840 CC-CACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** ** *
3533525 GCATACAGAGTTCATTCCCAGTCTAATATCGGGTCAGACCGAGGGTTGTGGCAGCACATGCTAGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
** * * * *
3533590 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTTGCCTGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTC-GGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *** **
3533655 ACCTGACCGACGGCATTTGGGTTCCGGTAATCGGGAGGGCCGGGGGGGGTGTGCGCACATGATGT
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCC-GAAGGGGTGTGCGCACATGATGT
* *
3533720 ACGATGGGTGCTGGTACTTGG-CCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * * * *
3533784 CTCCCCCTTAAAAAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAA
* * * * * *
3533849 TGGGGACACTTTTTTCAAATGGTCACCAAATCGTGTACACTTCAAGGTTTTAGCTGTATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
3533914 GTGCATGCCAACAAAAATACAAGGTTCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCGAAAA
* * * * * * * *
3533978 AATTTTAAAAAATCTCGAACCATAAAAAGTTTTGAGAATCATGAAAAGTAAAAAACGGGTCGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAG-TTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
3534043 TGCCCTGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAGTTTACAGGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
3534108 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGC
582 ATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** * * * * *
3534173 GCATCCCGTCTCTCTAGTAGGCATAGTGCCCGCCCACCCTCCCGCCCGTTCGTTTCATCGGTTGG
647 GCATCCCGTCTCTCTGGCCGACGTAGAGCCCGCCC-GCCT--CG--C--TCGTTTCGTCGGTTGG
*
3534238 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
705 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAG
3534275 GAGTTCATTC
Statistics
Matches: 11972, Mismatches: 1717, Indels: 937
0.82 0.12 0.06
Matches are distributed among these distances:
851 3 0.00
852 2 0.00
853 3 0.00
854 10 0.00
855 17 0.00
856 11 0.00
857 20 0.00
858 63 0.01
859 90 0.01
860 141 0.01
861 37 0.00
862 22 0.00
863 21 0.00
864 9 0.00
865 6 0.00
866 5 0.00
867 117 0.01
868 488 0.04
869 82 0.01
870 15 0.00
871 4 0.00
872 17 0.00
873 15 0.00
874 12 0.00
875 11 0.00
876 44 0.00
877 34 0.00
878 33 0.00
879 4 0.00
880 31 0.00
881 2 0.00
882 2 0.00
883 5 0.00
884 254 0.02
885 35 0.00
886 12 0.00
887 53 0.00
888 147 0.01
889 425 0.04
890 437 0.04
891 278 0.02
892 64 0.01
893 283 0.02
894 342 0.03
895 692 0.06
896 735 0.06
897 514 0.04
898 296 0.02
899 1058 0.09
900 1259 0.11
901 800 0.07
902 158 0.01
903 358 0.03
904 487 0.04
905 410 0.03
906 621 0.05
907 468 0.04
908 103 0.01
909 289 0.02
910 10 0.00
911 1 0.00
912 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (893 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGAAGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGAGCCCGCCCGCCTCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAAGATCGGCAGCACGC
AGAGGGGGACCCGACCGATCCCCGACTTACACATCCCACCCCTCTGGCCGACTGAGCGCCCCACG
CTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:3521914 original size:26 final size:26
Alignment explanation
Indices: 3521877--3521931 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
3521867 GGGTTGACTC
* *
3521877 AAGCATACGGAGTTCATTCCTAGTCT
1 AAGCATACGGAGTTCACTCCCAGTCT
*
3521903 AAGCATATGGAGTTCACTCCCAGTCT
1 AAGCATACGGAGTTCACTCCCAGTCT
3521929 AAG
1 AAG
3521932 ATCAGAGCGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
AAGCATACGGAGTTCACTCCCAGTCT
Found at i:3522172 original size:889 final size:891
Alignment explanation
Indices: 3519219--3523095 Score: 4914
Period size: 889 Copynumber: 4.3 Consensus size: 891
3519209 GTTGACTTAG
* * * *
3519219 GCATACGGAGTTCATTCCCAGTCTATGATCAG-AC-TG----AGGGTTACGGCAGCACATGCAGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGAACGAGACCAAGGGTTACGGCAGCACATGCTGG
* * * * *
3519278 GCTTGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTTGTAGCATCGTCGGAG
66 GCTCGGACATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * * *
3519343 AACCCGACTCGACGGCATTGGGGTTCCGACGATCGGGGGGGCTGAGGGGGGTCTGCGCACATGAT
131 AACCTGAC-CGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGA--AGGGTGTGCGCACATGAT
* * *
3519408 GTGTGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
** * * * *
3519473 CACATACCCTTAAAGAGCATTTAATATTTTACAGGTTTGCTA-CAAGTAGCCATTAACGTGTTTG
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAA-TAGCCATTAAAGTGTCTG
3519537 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTT
* * * * *
3519602 TTTGTGCATGCCAA-AAAAAAACAATAGGATCATGTCTACCAAGTTTGGGGACAAAACTCCTACC
386 TTTGTGCATGCCAACAAAAATAC-A-AGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCC
* * * * *
3519666 GAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGT
449 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG-TTTCAAAATCGTGAAAAATAGAAAACGAGT
*
3519731 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAA
513 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * **
3519796 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACAA
578 ATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * *
3519861 CTTGCGCATCCCGTCTCTCTAGTCGA-CGTAATGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCT
643 CTTGCGCATCCCGTCTCTCTGGCCGAGTGTCA-G-CAGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * *
3519925 TAGGCATACGAAGTT-AATTCCCAGTCTAAGATCAGATCGGACTGATGGTTGCAGTAGCAGGACC
706 TAGGCATACGAAGTTCAA-TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAAGATC
* * * *
3519989 GGCAGCATGCAGAGGGGGACCCGATCGATCCCCGACTTTCACATCCCTCCCCTCTGGCCGGCTGA
770 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGAC-TTCACATCCCACCCCTCTGGCCGACTGA
* *
3520054 GCGCCCGCACGCTCGTTTTGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 GCG-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
3520113 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AGACCAAGGGTTACAGCAGCACATGCTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGAACGAGACCAAGGGTTACGGCAGCACATGCTGG
** * * *
3520177 GCTC-GAGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCGCCGAA
66 GCTCGGA-CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGA
* **
3520241 GAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATG
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GAAGGGTGTGCGCACATGATG
* *
3520306 TGCGATGGGTGCTCGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * *
3520371 ACACCCCTTTAAAGTGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAA
* *
3520436 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGA-ACACTTCCAGTTTTTAGCTGAATTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTT-ATACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * *
3520500 TTGTGCATGCCAACAAAAATACAAGGATCATGCCCACCAAGTTCGGAGCCAAAACTCCTTTCAAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCGAA
* *
3520565 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTCAAAAATAGAAAACGAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGT
* *
3520630 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAGATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** *
3520695 TTATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAAT-CACGGCT
581 GCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG-ATCCACGGCT
* *
3520759 TGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCAGCCCGCCCACTCGCTCGTTTCGTCGGT
645 TGCGCATCCCGTCTCTCTGGCCGA-GT-GT--CAG-CAGCCCG--C-C-CGCTCGTTTCGTCGGT
* * * * * *
3520824 TGGCTTAGGCATACGGAGTTCATTGCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAA
701 TGGCTTAGGCATACGAAGTTCAATCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAA
* * * * * * * *
3520889 GATTGGCAACACGCAGTGGGGGACCCGACCGATCCTCGACTTCCGCATCCCGCCCCTCTGGGCGG
766 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTT-CACATCCCACCCCTCTGGCCGA
* * * * * * *
3520954 TTGAGCACCCCATGCTCTTTTCGTGGGTTGACTTGGGCATACGGAGTTCATTCCTAGTCTAA
830 CTGAGCGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
3521016 GCATACAGAGTTCTTTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGTAGCTCATGCTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGAACGAGACCAAGGGTTACGGCAGCACATGCTGG
**
3521080 GCTCTGG-CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGA
66 GCTC-GGACATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGA
* *
3521144 TAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGAGGGG-C-AAGGGGTGTGCGCACATGATG
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCGAA-GGGTGTGCGCACATGATG
* * *
3521207 TGAGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACGTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
3521272 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTTAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAA
* *
3521337 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
3521402 TGTGCATGCCAACAAAAATATAGGGATCACGTCTA-CAAGTTCAGGGCCAAAACTCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCGAAA
** * *
3521466 AAATTTTAAAAAATCTTGAACTGTAAAAAGTTTCAAAACTCGTGAAAAATAGAAAACAAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA-TCGTGAAAAATAGAAAACGAGTCGTC
* * *
3521531 TTGCCATGAGACTTCACGTGAAGGCGTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
3521596 CATTGGAATGCAGAAATATGAAGATGTGTCTAAACCCACCTACCATCCTATCGATGCACGGCTTG
582 CATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
3521661 CACATCTCGTCTCTCTGGCCG-GTGT-AG-AGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCA
647 CGCATCCCGTCTCTCTGGCCGAGTGTCAGCAGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
3521723 TACGGAGTTCAATCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGTAGTAGGATCGGTAGCA
712 TACGAAGTTCAATCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAAGATCGGCAGCA
* ** * *
3521788 TGCAGAGGGGGACCCGATTGATCCCCGGCTT-ATGCATCCCACCCCTCTGGCCGACTGAGCGGTC
777 CGCAGAGGGGGACCCGACCGATCCCCGACTTCA--CATCCCACCCCTCTGGCCGACTGAGC-GCC
* * * * * *
3521852 GCACGCTCATTCCATGGGTTGACTCAAGCATACGGAGTTCATTCCTAGTCTAA
839 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
3521905 GCATATGGAGTTCACTCCCAGTCTAAGATCAGAGCGA-ACCAAGGGTTACGGCAGCACATGCTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGAACGAGACCAAGGGTTACGGCAGCACATGCTGG
** ** * *
3521969 GCTCGGACATGTGCTGGTGCCGTATTTTTCTTCCCCGGGGCACCATCGTCGGGGCATCGTCGAAG
66 GCTCGGACATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * *
3522034 AACCAGACCGGCGACATTGGGGTTCC-AGCGAT-GGGGGTGCCGAAGGGTGTGCGCACATGATAT
131 AACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGG-GCCGAAGGGTGTGCGCACATGATGT
*
3522097 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
3522162 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAA
* *
3522227 TGGGGACACTTTTTTCAAATAGTCACAAAATCTTATACACTTTGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * * * *
3522292 ATGCACGCCGACAAAAATACAATGATCACGTCTACCAAGTTTGGGGCCAAAACACATTCTGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCGAAAA
* * * * * * *
3522357 ATTTTTAAAACATCTCGAAACGTAAAAAGTTTCCACAATCGTGAAAAATAAAAAACGAGTTGTCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTT-CAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
3522422 TGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATCAATTTACAAGCAATAAAAAAGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
3522487 ATTGGAA-CCTAGAAACATGAAGATGTGACTAAACCAACCTACCACCCTATCGATCCACGGCTTA
583 ATTGGAATGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
3522551 CGCATCCCGTCTCTCTGGCCGAGGTAGTGCTTGCCCGCCTGCTCGCCCGCCCGCTCGTTTCGTCC
647 CGCATCCCGTCTCTCTGGCC---G-AGTG--T------CAGC-AGCCCGCCCGCTCGTTTCGTCG
* * ** *
3522616 GTCGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCGGTAGC
699 GTTGGCTTAGGCATACGAAGTTCAATCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGC
* * * * *
3522681 AAGAT-TGCAGCACACAGAGGGGGACCCGACCGATCCCCGCCTTGCACATCCTACCCCTCTGGTC
764 AAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTT-CACATCCCACCCCTCTGGCC
* *
3522745 GACTGAGCGCCTGCACACTCGTGTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
828 GACTGAGCGCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
3522810 GCATACAAAGTTCATTCCCAGTCTAAGATCA-AACCAGACCGAGGGTTACGGCAGCACATGCTAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGAACGAGACCAAGGGTTACGGCAGCACATGCTGG
* * * ** * *
3522874 GCTCGGGCAGGTGCTAGTGCGGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAG
66 GCTCGGACATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * *
3522939 AACCTGACCGGCGGCATTGGGGTTCGGGCGATCGGGGGGTCGAAGGGGTGTGCGCACATCATGTG
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGAA-GGGTGTGCGCACATGATGTG
3523004 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
3523069 ACCCTCTTAAAGAGAATTTGAGATTTT
260 ACCCCCTTAAAGAGCATTTGAGATTTT
3523096 TTTCAAATGG
Statistics
Matches: 2592, Mismatches: 326, Indels: 118
0.85 0.11 0.04
Matches are distributed among these distances:
887 3 0.00
888 133 0.05
889 414 0.16
890 210 0.08
891 4 0.00
892 6 0.00
893 1 0.00
894 31 0.01
895 8 0.00
896 227 0.09
897 208 0.08
898 45 0.02
899 90 0.03
900 222 0.09
901 227 0.09
902 4 0.00
903 196 0.08
904 131 0.05
905 239 0.09
906 192 0.07
907 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGAACGAGACCAAGGGTTACGGCAGCACATGCTGG
GCTCGGACATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGAAGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGAGTGTCAGCAGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
AAGTTCAATCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAAGATCGGCAGCACGCA
GAGGGGGACCCGACCGATCCCCGACTTCACATCCCACCCCTCTGGCCGACTGAGCGCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:3523674 original size:26 final size:26
Alignment explanation
Indices: 3523638--3523690 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3523628 GTTGACTTAG
*
3523638 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3523664 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3523690 G
1 G
3523691 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3526371 original size:26 final size:26
Alignment explanation
Indices: 3526341--3526393 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3526331 GTTGACTTGG
3526341 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
3526367 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3526393 G
1 G
3526394 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3527284 original size:26 final size:26
Alignment explanation
Indices: 3527246--3527296 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3527236 TTGACTTAGG
*
3527246 CATACAGAGTTCATTCCCAGTCTAAC
1 CATACAGAATTCATTCCCAGTCTAAC
3527272 CATACAGAATTCATTCCCAGTCTAA
1 CATACAGAATTCATTCCCAGTCTAA
3527297 GATCAGACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.29, G:0.10, T:0.27
Consensus pattern (26 bp):
CATACAGAATTCATTCCCAGTCTAAC
Found at i:3528142 original size:26 final size:26
Alignment explanation
Indices: 3528113--3528164 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
3528103 GTTGACTTAG
**
3528113 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCAAAGTCTAA
3528139 GCATATGGAGTTCATTCAAAGTCTAA
1 GCATATGGAGTTCATTCAAAGTCTAA
3528165 AATTGGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATATGGAGTTCATTCAAAGTCTAA
Found at i:3529048 original size:26 final size:26
Alignment explanation
Indices: 3529012--3529064 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3529002 GTTAACTTAG
*
3529012 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3529038 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3529064 G
1 G
3529065 ATCAGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3529932 original size:26 final size:26
Alignment explanation
Indices: 3529893--3529948 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
3529883 TAGGTTGACT
*
3529893 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAATC
* *
3529919 TAAGCATACGGAGTTCATTCCTAATC
1 TAAGCATACAGAGTTCATTCCCAATC
3529945 TAAG
1 TAAG
3529949 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAATC
Found at i:3530832 original size:26 final size:26
Alignment explanation
Indices: 3530802--3530854 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3530792 GTTGACTTAG
*
3530802 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
3530828 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3530854 G
1 G
3530855 ATCGGATTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3531732 original size:26 final size:26
Alignment explanation
Indices: 3531695--3531746 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
3531685 GTTGACTTAG
* *
3531695 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3531721 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3531747 TATCGGACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:3533529 original size:26 final size:26
Alignment explanation
Indices: 3533499--3533550 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
3533489 GTTGACTTAG
* **
3533499 GCATACGGAGTTCATTTGCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3533525 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3533551 TATCGGGTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3533980 original size:895 final size:893
Alignment explanation
Indices: 3527836--3534274 Score: 8222
Period size: 895 Copynumber: 7.2 Consensus size: 893
3527826 ATGAATTTAC
* ***
3527836 GTAGAAATATGAAGATGTGCCTAAACCCACCTATCA-CCTATCGATCCACGGCTTGTAAATCCCG
1 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
3527900 TCTCTCTAGTCGACGTAGTGCCCGCCCGCCCGCTTC-TTTCGTCGGTTGGCTTAGGCATACGGAG
66 TCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGC-TCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * ** * * *
3527964 TTCATTCCTAGTCTAAGATCAGA-CTAGACCGAGGGTTACAGTAGTAGGATCGGCAGCACGCAGA
130 TTCATTCCCAGTCTAAGATCAGACCGA-ACCAAGGGTTATGGCAGCAGGATCGACAGCACGCAGA
* * * * * *
3528028 GGGGGACCCGATCAATCCGCGACTTGCGCATCCCACCCCTTTGGCCGGCTGAGCGCCCGCACGCT
194 GGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * ** **
3528093 CGTTCCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCAA
259 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCC
* * * * * * * *
3528158 AGTCTAAAATTGGACCGGACCGAGGGTTGCGGCATCACATGCTGGGCTTGGGCCTGTGCTGGTGT
324 AGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * *
3528223 CGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCGGAGAACTTGACCGACGGCATTGG
389 CGCATTTTTCTTCG-CCGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTTG
* * * *
3528288 GGTTCCAGCGATTGGGGGGGCC-GGGGG-GTGCACACATCATGTGCGATGGGTGCTGGTACTTGG
453 GGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
3528351 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGTGCATTTG
518 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * *
3528416 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTTTGAAATCGGGACACTTTTTTCAAATG
583 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
** * * *
3528481 GTCACAAAATCTTGTACAGATCGAGCTTTTTGCTGAATTTTTTTGTGCTTGCCAACAAAAATACA
648 GTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* *
3528546 AGGATC-C-TCCTACTAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAAC
713 AGGATCACGT-CTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAAC
* *
3528609 CGTAAAAGGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGA
776 CGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
*
3528674 AGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCAT
841 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * * *
3528727 GTAGAAATTTAAAGATGTGCCTAAACCCACGTACCACCCTATCGATCCATGGCTTACG-ATCCCG
1 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * **
3528791 TCTCTCTAGCCGACGTAGTGCCCGCCTGCCCGCCCAACCACTCATTTCATCGGTTGGCTTAGGTG
66 TCTCTCTGGCCGACGTAGTGCCCGCCTGCCCG--------CTCGTTTCGTCGGTTGGCTTAGGCA
* * **
3528856 TATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGTGGCAGCAGGATCGGTAGCA
123 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTATGGCAGCAGGATCGACAGCA
* * * * * * *
3528921 CGCAGAGGGGTACCCGATTGATCCCCGGCTTGCGCATCTCGCCCCTTTGGCCGGTTGAGTGCCCG
188 CGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * * * * *
3528986 TATGCTCGTTTCGTGGGTTAACTTAGGCATAGGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
253 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTC
* ** ** * *
3529051 ATTCCCAGTCTAAGATCAGATTGGATTGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGC
318 ATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* * * *
3529116 TGATGTCGCATTTTTCTTCGTCGGGGC-CCAT--------CAT---CGGAGAACCTGACCGACGG
383 TGGTGCCGCATTTTTCTTCG-CCGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGG
* * * * *
3529169 CATTAT-GGTTTCGACGATTGGGGGGGCCGGGGGGGTGTGCACAAATGATGTGCGATGGGTGCTG
447 CATT-TGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
3529233 GTACTTGCCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
510 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
** *
3529298 AGCATTTGAGATTTTGTAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTT
575 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
3529363 TTCAGATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACA
640 TTCAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTTGTGCATGCCAACA
**
3529428 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAAT
705 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAATTTTAAAAAAT
* * * *
3529493 CCTGAACCGTAAAAAGTTTTAAAAATTGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTT
769 CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTT
* * * *
3529558 CACTTGAAGGCTTAAGGGACAATTGTATGAGTTTACAAGCCATAAAAATGGCATTGGCAC
834 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
3529618 ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCG
1 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * ** * **
3529683 TCTCTGTGGCCGGCGTAGTGCCCGCCCACCCGCTTGTTTCGTCAATTGGCTTAGGCATACGGAGT
66 TCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* *
3529748 TCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGTGGCAGCAGGATTGACAGCACGCAGAAG
131 TCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTATGGCAGCAGGATCGACAGCACGCAG-AG
* * * *
3529813 GGGGACCCAGTTGATCCGCGGCTTGC-CATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTC
195 GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * * * *
3529877 GTTTCGTAGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTA
260 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCA
* * * * *
3529942 ATCTAAGATCAGACCAGATCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
325 GTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * * * *
3530007 GCATTTTTCCTCACCGAGGCACCATCGTCAGAGCATCGTCGGAGAACTTGACCGGCGGCATTAGG
390 GCATTTTTCTTCGCCG-GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTTGG
* * * *
3530072 GATCCGACAATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGGGATGGGTGCTGGTACTTGG
454 GTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * * * *
3530137 CCCTCATATTGGGCCCCTATCCCTCATCAAACATCAAGAACTCAGACCCCCTTAAAGAGCATTTG
518 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * * *
3530202 AGAATTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATCGGGACAC-TTTTTCAAATG
583 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
3530266 GTCACAAAATCTTGTTCACTTCGA-GTTTCTAGCTGAATTTTTTTTTTTGCTTGCCAACAAAAAT
648 GTCACAAAATCTTGTACACTTCGAGGTTT-TAGCTGAA--TTTTTTTGTGCATGCCAACAAAAAT
* * *** *
3530330 ACAAGGATCATGTCTACTAAGTTTACAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGA
710 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGA
* * *
3530395 ACCGCAAAAAGTTTCTAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
774 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGT
3530460 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
839 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * * *
3530515 GTAGAAATATAAAGATGTGCCTATACCCACCTACAATCCTATCGATCCACGGCCTGCGCATCCCG
1 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
3530580 TCTCTCTGGTCGACGTAGTGCCTGCCCGTCCGCCTGGTCGCTCGTTTCGTCGGTTGGCTTAGGCA
66 TCTCTCTGGCCGACGTAGTGCCCG-CC-T--GCC----CGCTCGTTTCGTCGGTTGGCTTAGGCA
* ** * * ** * **
3530645 TACGGAGTTAATTCAATAGTCTAAGATCGGACAGAACTGAGGGTTGTGGCAGCAGGATCGGTAGC
123 TACGGAGTTCATTC-CCAGTCTAAGATCAGACCGAACCAAGGGTTATGGCAGCAGGATCGACAGC
* * * * * * *
3530710 ACGTAGAGGGGGACCCGGCCGATCCTCGGCTTGCACATCCCGGCCCTCTGGCCGGTTGAGCGCCT
187 ACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
*
3530775 GCACGCTCGTTTCATGGGTTGACTTAGGCATACCGAGTTCATTCCCAGTCTAAGCATACAGAGTT
252 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
* * * * * *
3530840 CATTCTCAGTCTAAGATCGGAT-TGAACCGAGGTTTGCAGTAGCACATGCTGGGCTTGGGCATGT
317 CATTCCCAGTCTAAGATCGGATCAG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
** *
3530904 GCTGGTATCGCATTTTTCTTCGCCAGGGCACCATCGCCGGGGCATCGCCGGAGAACCTGACCGGC
381 GCTGGTGCCGCATTTTTCTTCGCC-GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGC
* * * *
3530969 GGCACTAGGGTTTCGGC-ATTCGGGGGGGGCCGGGGGGTGTGCGCACATGATTTGCGATGGGTGC
445 GGCATTTGGGTTCCGGCGA-TC-GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
3531033 TGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCTTTAA
508 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
3531098 AGAGCATCTCAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
573 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
3531163 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGACAA
638 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * **
3531228 CAAAAATACAAGGATCATGTCTACCTAGGTTT-TAGCCAAAACTCCTTCCGAAAAAATTTTAAAA
703 CAAAAATACAAGGATCACGTCTACC-AAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAA
* * *
3531292 AAT-CCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
766 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAA
* *
3531356 CTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCAT
831 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * *
3531419 GCA-AAATAGGAAGATGTGCCTAAACCAACCTACAACCCTATCGATCCACGGCTTGCGCATCCCG
1 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * ** * *
3531483 TCTCTCTGGCCGACGCAGTGCCCGCCTGCCCGCTCATTTCGTCCATTAGCATAGGCATACGGAGT
66 TCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * * *
3531548 TCATTCCCAGTCTAA-ATCAGA-CTAGACCAAGGGTTACGACAACAAGATTGACAGCACGCAAAG
131 TCATTCCCAGTCTAAGATCAGACCGA-ACCAAGGGTTATGGCAGCAGGATCGACAGCACGCAGAG
* * * * * * * * *
3531611 AGGGACCCAGCCGATCCCTGACTTACGCATCCCGCCCTTCTGGCCGACTGAGCGCCTGCACGCTC
195 GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* *
3531676 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCGCAGTCTAAGCATAC-GAAGTTCATTCCC
260 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG-AGTTCATTCCC
* * * * * * *
3531740 AGTCTAATATCGGACCAGACTGAGGGTTGTGACAGCACATGCTAGGCTCGAGCATGTGCTGGTGC
324 AGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * *
3531805 CACATTTTTCTTCGCCTGGGCACCATCACCGGAGCATCACCGGAGAACCCGACCGGTGGCA-TTG
389 CGCATTTTTCTTCGCC-GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTTG
*
3531869 GTGTTCCGGTGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
453 G-GTTCCGGCGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
3531934 TGGCCCTTATATTGGGCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
515 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * *
3531999 TTGAGATTTTACAGGTTTGCTGCAAGTAGCTATGAAAGTGTCTGAAATGGGGACACTTTTTTCAA
580 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
3532064 ATGGCCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTTGTGCAT-CACAATAAAAA
645 ATGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTTGTGCATGC-CAACAAAAA
*
3532128 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCCAAAAAA-TTTAAAAAATCCTG
709 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CCAAAAAATTTTAAAAAATCCCG
* ** * *
3532192 AACGGTAAAAAGTTTTGAGAATCGTGAAAAATAAAGAACGAGTCGTCTTGCCCATGAAACTTCAC
773 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTG-CCATGAAACTTCAC
*
3532257 GTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCAT
837 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
3532314 GTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCA
1 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * *
3532379 TCTCTCTGGCCGACGCAGTGCCCGCCCGCCCGCCCACCCGCCTGCTTTTTTCGTCGATTGGCTTA
66 TCTCTCTGGCCGACGTAGT----GCCCGCCTG----CCCG-CT-C--GTTTCGTCGGTTGGCTTA
* * * ** *
3532444 GGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCGAACCGAGGGTTACAGTAGCAGGATC-AG
119 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTATGGCAGCAGGATCGA-
* * * * * * * *
3532508 CAGCATGTAGAGGGAGACCCGGTCGATCCCCGGCTTTCGCATCCCGCCCCTCTAGCTGACTGATC
183 CAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
3532573 GCCCGCACACTCGTCTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACAG
248 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
** * * *
3532638 AGTTCATTCCCAGTCTGGGATCGGATCAAACCGAGGGTTGTGGCAGGACATGCTGGGCTCGGGCA
313 AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * * * **
3532703 TGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCACCGGAGCATCACCGGGGAACCTGATA
378 TGTGCTGGTGCCGCATTTTTCTTCGCCG-GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACC
* * * *
3532768 GGTGGAATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
442 GGCGGCATTTGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
3532833 CTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
507 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
3532898 AAGACCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
572 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
3532963 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
637 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
3533028 ACAAAAATACAAGGATCACATCTACCAAGGTTTTAGTG--AAAACTCCTTCTAAAAAAATTTTAA
702 ACAAAAATACAAGGATCACGTCTACCAA-G-TTTGGGGCCAAAACTCCTTC-CAAAAAATTTTAA
* *
3533091 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCATGA
764 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGA
* * *
3533156 AACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGACAT
829 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
3533221 GTAGAAATATGAAGATGTGCGTAAACCCACTTACCACCCTATCGATCCACGGCTTGCGCATCCAG
1 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * *
3533286 TCTCTCTGGTCGGCGTAGTGCCTGCCTGCCCGCTCGTTTCGTCTGTTGGCTTAGGCATATGGAGT
66 TCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* ** * * * *
3533351 TCATTCCCAATCTAAGATTGGACCGGACCAAGGGTTATGGTAGCAAGATCGACAGCACGCAAAGG
131 TCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTATGGCAGCAGGATCGACAGCACGCAGAGG
* * * * * * * * *
3533416 GGGACCTGGTCGATCCCCGACTTGCGCATCCCACCCCTCTAGCTGGTTGAGTGCCCGCACACTCA
196 GGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
**
3533481 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTTGCAGTCTAAGCATACAGAGTTCATTCCCAG
261 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAG
* * * *
3533546 TCTAATATCGGGTCAGACCGAGGGTTGTGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCG
326 TCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * *
3533611 TATTTTTCTTTGCCTGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTTGGG
391 CATTTTTCTTCGCC-GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTTGGG
** * *
3533676 TTCCGGTAATCGGGAGGGCCGGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGG
455 TTCCGGCGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * * *
3533741 -CCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACTCCCCCTTAAAAAGCATTTA
518 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
3533805 AGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
583 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * *
3533870 GTCACCAAATCGTGTACACTTCAAGGTTTTAGCTGTATTTTTTTGTGCATGCCAACAAAAATACA
648 GTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * *
3533935 AGGTTCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCTCGAACCA
713 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCGAACCG
** * * * * * *
3534000 TAAAAAGTTTTGAGAATCATGAAAAGTAAAAAACGGGTCGTCTTGCCCTGAAACTTAACGTGAAG
778 TAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
3534065 GCTTAAGGGACCATTGTATGAGTTTACAGGCCATAAAAATGGCATTGGCAT
843 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
3534116 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGCATCCCG
1 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* ** * * * *
3534181 TCTCTCTAGTAGGCATAGTGCCCGCCCACCCTCCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCA
66 TCTCTCTGGCCGACGTAGTGCCCG-----CCT---GCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
3534246 TACGGAGTTCATTCCCAGTCTAAGATCAG
123 TACGGAGTTCATTCCCAGTCTAAGATCAG
3534275 GAGTTCATTC
Statistics
Matches: 4855, Mismatches: 588, Indels: 198
0.86 0.10 0.04
Matches are distributed among these distances:
883 2 0.00
884 245 0.05
885 28 0.01
887 41 0.01
889 5 0.00
890 221 0.05
891 280 0.06
892 67 0.01
893 272 0.06
894 315 0.06
895 671 0.14
896 469 0.10
897 307 0.06
898 10 0.00
899 269 0.06
900 13 0.00
901 3 0.00
902 2 0.00
903 135 0.03
904 125 0.03
905 138 0.03
906 403 0.08
907 452 0.09
908 103 0.02
909 273 0.06
910 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (893 bp):
GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTATGGCAGCAGGATCGACAGCACGCAGAGG
GGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAG
TCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
CATTTTTCTTCGCCGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTTGGGT
TCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
ACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCGAACCGTAA
AAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
Found at i:3534278 original size:25 final size:25
Alignment explanation
Indices: 3534249--3534299 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
3534239 TTAGGCATAC
3534249 GGAGTTCATTCCCAGTCTAAGATCA
1 GGAGTTCATTCCCAGTCTAAGATCA
3534274 GGAGTTCATTCCCAGTCTAAGATCA
1 GGAGTTCATTCCCAGTCTAAGATCA
3534299 G
1 G
3534300 ACCGGACCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (25 bp):
GGAGTTCATTCCCAGTCTAAGATCA
Found at i:3537070 original size:26 final size:26
Alignment explanation
Indices: 3537034--3537086 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3537024 GTTGACTTAG
* *
3537034 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3537060 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3537086 G
1 G
3537087 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3537971 original size:26 final size:26
Alignment explanation
Indices: 3537941--3537990 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
3537931 GACTTAGGCG
3537941 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
*
3537967 TACGGAGTTCATTCTCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
3537991 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:3539358 original size:906 final size:900
Alignment explanation
Indices: 3536746--3544290 Score: 9049
Period size: 906 Copynumber: 8.4 Consensus size: 900
3536736 TTTTAGCTGA
* * * *
3536746 AGAAATATGACGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCTGTC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTC
* * * * * * **
3536811 TCTCTGGCCGATGTATTGCCTGCCCACCTGTCTGCCCGTCCGCTCGTTTTGTCCATTGGCTTAGG
66 TCTCTGGCCGACGTAGTGCCTG-CC-CC-GCCCGTCCGCCCGCTCGTTTTGTCGGTTGGCTTAGG
* * * * * **
3536876 CATACGGAGTTCATTCCAAGTCTAAGATTAGACCGGACTGAGGGTTGTGGTAGCAGGATCAATAG
128 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCAGCAG
* * ** * * *
3536941 CACGCATAGGGGGACCCAGCCGATCCCCGGCTTATGCATCCCGCCTCTCTGGCCGGTTGAGCACC
193 CACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * *
3537006 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACAGAGT
258 CGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * ** *
3537071 TCATTCCCAGTCTAAGATCGGACCAGGCTGAGGGTTGCGATAGCACATGCTAGGCTCGGGCATGT
323 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * **
3537136 GCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGATCGAC
388 GCTGGTGCCGCATTTTTCTTCG-CCGGGCACCATCGTCGGAGCATCACCGGAGAACCTGATCG-C
* * * * * * *
3537201 AGCATTGGGGTCCCGACGATCCAGGGGGCCGGGGGGTGTGCGCATAAGATGTGCGAT-GGTGCTG
451 GGCATTGGGGTTCCGGCGAT-CGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
3537265 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAAACCTCAAGAACTCACACCCCCTTAAA
515 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCA-TCAAACCTCGAGAACTCACACCCCCTTAAA
* *
3537330 GAGCATTTGAGATTTTGCATGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
579 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
3537395 TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAACTTTTTTGTGCATGCCAAC
644 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
3537460 AAAAATACAAGGATCACGTCTACTAGGTTTGGGGCCAAAA-TGCCTTCCGAAAAAATTTTAAAAA
709 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCC-AAAAAATTTTAAAAA
* *
3537524 ATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGCCTTGCCATGAAAC
772 ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
3537589 TTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAAT
837 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGT
* * *
3537653 AGAAATATGAAGATTTTCCTAAACCCACCTACCACCCTATCGATCCACAACTTGCGCATCCCGTC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTC
* * * * * **
3537718 TGTCTGGCCGGCGTAGTGCCTGCCCCCCCCGCCCGTCCGCTCGTTCCGTCGGTTGGCTTAGGCAT
66 TCTCTGGCCGACGTAGTGCCTGCCCCGCCCGTCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCAT
* * * *
3537783 ACGGAGTTCATTCCCAGTGTAAGATCAGACTGGACCGAGGGTTGTGGTAGCAGGATCAGCAGCAC
131 ACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCAGCAGCAC
* * ** *
3537848 GAAGAGGGGGACCTGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGC
196 GCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* *
3537913 ACACTCGTTTCATGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
261 ACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* ** * *
3537978 TTCTCAGTCTAAGATTGGACCGGACCAAGGGTTGCGGTC-GCACATGCTGGGCTCGGGCATGTGC
326 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG-CAGCACATGCTGGGCTCGGGCATGTGC
* * *
3538042 TGGTGCCGCATTTTTCTT----------CATCG-AGGCAGCATCGCCGGAGAACCTGACCGACGG
390 TGGTGCCGCATTTTTCTTCGCCGGGCACCATCGTCGG-AGCATCACCGGAGAACCTGATCG-CGG
** * *
3538096 C-TATGGGGTTCCAACGATCCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAG
453 CAT-TGGGGTTCCGGCGAT-CGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
3538160 TACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGGGAACTCACACCTCCTTAAAGA
516 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
3538225 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
581 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
3538290 TCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTTCCTGCCAACAA
646 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * *
3538355 AAATACTAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTCCGAAAAATTTTAAAAAATCT
711 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCC
* * * *
3538420 CGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGACTGGTCTTGCCATGAAACTTCA
776 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * *
3538485 CGTGAAGGCTTAAGGGACCATTGTATGTATTTACTAGCCATAAAAATTGCATTGCCAAGT
841 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGT
* * * * *
3538545 AGAAATATGAAGCTGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCCCTTCCCGTC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTC
* * ** ** *
3538610 TCTCTGGCCGACGTAGTGCCTGCCCGTCTGCCCTTCCACCCGCTCGTTTTGTCTTTTTACTTACG
66 TCTCTGGCCGACGTAGTGCCTGCCC--C-GCCCGTCCGCCCGCTCGTTTTGTCGGTTGGCTTAGG
*
3538675 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA-TGAAGGGTTGCGGCAGCAGGATCGGCA
128 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTG-AGGGTTGCGGCAGCAGGATCAGCA
* * *** * * *
3538739 GCACACAGAGGGGGACCTGGCCGATCTTTGGCTTGCGCATCTCGCCCCTCTGGCCGACTGAGTGC
192 GCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
3538804 CTGCACACTCGTTTCGTGGGTTGACGTT-GGCATACAGAGTTCATTCCCAG-CATAAGCATATGG
257 CCGCACACTCGTTTCGTGGGTTGAC-TTAGGCATACGGAGTTCATTCCCAGTC-TAAGCATACGG
* * * *
3538867 AGTTCATTCCCAATCTAAGATCAGACTAGATCGAGGGTTGCGGCAGCACATGTTGGGCTCGGGCA
320 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * *
3538932 TGTGCTGGTGCTGCATTTTTCTTCGCCGGGTCACCATCGTTGGAGCATCACCGGAGAACCCGACC
385 TGTGCTGGTGCCGCATTTTTCTTCGCCGGG-CACCATCGTCGGAGCATCACCGGAGAACCTGATC
* * * *
3538997 AGCGGCATTAGGGTTCTGGTGATCGGGGGGGTCGGGGGCGTGTGCGCACATGATGTGCGATGGGG
449 -GCGGCATTGGGGTTCCGGCGATC-GGGGGGTCGGGGG-GTGTGCGCACATGATGTGCGATGGGT
*
3539062 GCTGGTACTTGGCCCTTATGTTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
511 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
3539126 AAAGAGCATTTGAGATTTTACAGGTTTGGTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
576 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
3539191 ATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
641 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
3539256 AACATAAATACAAGGATCATGTCTACCAAGTTTGGGGTCAAAACTCCTTCCAAAAAACTTTAAAA
706 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA-TTTTAAA
** * * *
3539321 AAATCCCGAACTATAAAAA-TTTCAAAAATCCTGAAAAATTAG-AAACAAGTCGTCTTGCCATTA
770 AAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA-TAGAAAACGAGTCGTCTTGCCATGA
* *
3539384 AACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGCAC
834 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAA
3539449 GT
899 GT
* * *
3539451 AGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTC
* * *
3539516 TCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGTCTGCCCGCTCGTTTTGTCGGTTGGCTTACG
66 TCTCTGGCCGACGTAGTGCCTG-CC--CCGCCCGTCCGCCCGCTCGTTTTGTCGGTTGGCTTAGG
* * * * *
3539581 CATATGGAGTTCATTCCCAATCTAAGATAAGACTAGA-TGCAGGGTTGCAGCAGCAGGATCAGCA
128 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTG-AGGGTTGCGGCAGCAGGATCAGCA
* * * * * *
3539645 GCACACAGAGGGGGACCTGGCCGATCCCCGGCTTGTGCATCTCGCCCCTCTGGCCGACTGAGTGC
192 GCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
3539710 CCACACACTCGTTTCCTGGGTTGACGTT-GGCATACGGAGTTCATTCCCAGCCTAAGCATACGGA
257 CCGCACACTCGTTTCGTGGGTTGAC-TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * *
3539774 GTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCAT
321 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * *
3539839 GTGCTGGTGCCACATTTTTCTTCGTCGGGTCACCATCG-CTGGAGCATCACCGGAGAACCCGACC
386 GTGCTGGTGCCGCATTTTTCTTCGCCGGG-CACCATCGTC-GGAGCATCACCGGAGAACCTGATC
* * *
3539903 AGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGCGTGTGCGCAGATGATGTGCGATGGGGG
449 -GCGGCATTGGGGTTCCGGCGATCGGGGGGTCGGGGG-GTGTGCGCACATGATGTGCGATGGGTG
*
3539968 CTAGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
512 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
3540032 AAAAACATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
577 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
3540096 TTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATCCCA
642 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
3540161 ACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCTAAAACTCCTTCCGAAAAAATTTT-AAA
707 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAA
* *
3540225 AATCCCGAACTGTAAAAAGTTTCAAAAATCGATGAACTCTAAAAAGTTTCAAAAATTCCAAACTG
771 AATCCCGAACCGTAAAAAGTTTCAAAAATCG-TG------AAAAA---T---AGA----AAAC-G
* * ** * * * ***
3540290 CAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAATTTCACATGGAG
818 -----AG--TC----GTCTTG--CCAT--GAAAC---T--TC---ACGTG-AAGGC---------
* * * *
3540355 GCTTAAGGGACCATTATATGAATCTACAAGCCAGAAAAATGGCATTGGCATGT
850 --TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGT
* * *
3540408 AGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCATGACTTGCGCATCCCGCC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTC
** * * * ** * *
3540473 TCTCTCACCGGCCTAGTGCCCG-CCCGCCCGT----CCGCTCGTTTCATCGGTTAGCTTAGGTAT
66 TCTCTGGCCGACGTAGTGCCTGCCCCGCCCGTCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCAT
* ** * *** * * *
3540533 ACAGAGTTCATTCCCAGTCTAAGATTGGACTGGATTGAGGGTTATTGAAGTAGGATCGGCAGCAC
131 ACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCAGCAGCAC
* * * * *
3540598 GCAGAGGGGGACCCGGTCGATCCCCTGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGT
196 GCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* ** *
3540663 ACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCA
261 ACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * **
3540728 TTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCACATGCTGGGCTCATGCATGTGCT
326 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * *
3540793 GGTGTCGCATTTTTCTTCGCCGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAACGGCGACA
391 GGTGCCGCATTTTTCTTCGCCGGGCACCATCGTCGGAGCATCACCGGAGAACCTGATC-GCGGCA
* * *
3540858 TTTGGGTTCCGGCGATCGGCGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACT
455 TTGGGGTTCCGGCGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * *
3540923 TGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAATTCACACCCCTTTAAAGAGCAT
520 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
3540988 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACATTTTTCAA
585 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
3541053 ATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACATAAAT
650 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* *
3541118 ACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTCCAAAAAACTTTTAAAAAATCTCGA
715 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA-TTTTAAAAAATCCCGA
* *
3541183 ACTGTAAAAA-TTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGT
779 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* *
3541247 GAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGCATGT
844 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGT
* *
3541304 AGAAATATGAAGATGT-ACTAAACCCACCTACCACCCTATCGATCGACGACTTGCGCATCCCGTC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTC
* * * * * * * *
3541368 -CTTTTGGCCGACGTAATGCCCG-CCTGCCCGCCCGCCCGTTCGTTTCGTCAGTTGGCTTAGGCA
66 TC-TCTGGCCGACGTAGTGCCTGCCCCGCCCGTCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCA
* * * * * * *
3541431 TACGGAGTTCATTCCTAGTCTAAGATCAGACTAGACCGAGGGTTGCAGTAGCAGGATTAGCACCA
130 TACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCAGCAGCA
* * * * * * * * *
3541496 CACAGACGGGGACCCGACCAATCCCCGGCTTGTGCATCTCGCCCCTCTGGCCTGTTGAGC-ACCG
195 CGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * **
3541560 CACACTCGTTTCGTGGGTCGACTTAGGCATATGGAGTTCATTCCCAGTCTAAATATACGGAGTTC
260 CACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * ** * *
3541625 ATTCCCAGCCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATATTCGGCTCGAGCATGTGC
325 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* *
3541690 T-GTGCCGTATTTTTCTTCGTCGGGGCACCA---TC---G--T---CGGAGAACCTGATCGGCGG
390 TGGTGCCGCATTTTTCTTCG-CCGGGCACCATCGTCGGAGCATCACCGGAGAACCTGATC-GCGG
* * *
3541743 CATTGTGGTTTCGGC--T------ATC--GGGG-G-G-GC-C---A-----G--GGGTGCTGGTA
453 CATTGGGGTTCCGGCGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
3541784 CTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
518 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
3541849 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACATTTTTTTC
583 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
3541914 AAAAGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTGAA-TTTTTTATGCATGCCAACAAAA
648 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * *
3541978 ATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACCCCTTCCAAAATAATTTTAAAAAAATCT
713 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA-AATTTT-AAAAAATCC
* * * *
3542043 CGAACCGTAAAAAGTTTCGAAGATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCA
776 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
3542108 CGTGAAGGCTTAAGGGGCCATTGTATGCATTTACAAGCCATAAAAATGGCATTGGCATA-C
841 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-AGT
* *
3542168 AGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCGACCCACGACTTGCGCATCCCGTC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTC
* * * *
3542233 TCTTTGGCCGGCGT--TG--TG-CCCGCCCGTCCGCCCGCTCATTTTTCTCGGTTGGCTTAGGCA
66 TCTCTGGCCGACGTAGTGCCTGCCCCGCCCGTCCGCCCGCTC-GTTTTGTCGGTTGGCTTAGGCA
* * * * *
3542293 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-TCGAGTGTTGCGGCAGCAGGAAT-GGCAA
130 TACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACT-GAGGGTTGCGGCAGCAGG-ATCAGCAG
* * * *
3542356 CACGTAGAGGGGGACCCGACCGATCCCCGACTTGCGCATTCCGCCCCTCTGGTCC-GCTGAG-GC
193 CACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-CCGGCTGAGCGC
* *
3542419 CCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAAGCATACGGAG
257 CCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * ** * * * * *
3542484 TTCATTCCCTGTCTAAGATCAGACCGGACTGAGGGTTATGACAGCACATGTTGTGCTCGAGAATG
322 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * *
3542549 TACTGGTGCCACATTTTTCTTCACCAGGGCAGCATCGTCGGAGCATCACCGGAGAACCTGATCGA
387 TGCTGGTGCCGCATTTTTCTTCGCC-GGGCACCATCGTCGGAGCATCACCGGAGAACCTGATCG-
** * *
3542614 CGGCATTGGGGGTTATGGCAATCGGGGGGGCTGAGGGGGTGTGCGCACATGATGTGCGATGGGTG
450 CGGCATT-GGGGTTCCGGCGATCGGGGGGTC-G-GGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
3542679 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAATTCACACCCCTTTA
512 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
3542744 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
577 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
3542809 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAA-TTTTTTATGCATGCCA
642 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
3542873 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAA
707 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAATTTTAAAA
** * * * *
3542938 AATCCCGAACCACAAAATGTTTCAAAAATCATGAAAAATAGAAAATGAGTTGTCTTGCCATGAAA
771 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
3543003 CTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA-
836 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-AG
*
3543067 C
900 T
*
3543068 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGACTTGCGCATCCCGTC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTC
* * * *
3543133 TCTCTGGTCGACGTAGTGCCT-ACCTG--C--CCGCCCGCTCGTTTCT-TCAGTTGGCTTAGGCA
66 TCTCTGGCCGACGTAGTGCCTGCCCCGCCCGTCCGCCCGCTCGTTT-TGTCGGTTGGCTTAGGCA
** * ** ** * *
3543192 TACGGAGTTCATTCCCAGTCTAAGATTGGTCCAGACCAAGGGTTGTGGCAGCAGGATCGGCAGCA
130 TACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCAGCAGCA
** * * * * *
3543257 CGCAGAGGGGGACCCAACCGATCCGCGACTTGCGTATCCCACCCCTCTGGCCGGCTGAGTGCCCG
195 CGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * *
3543322 CACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCGTTCCCAG--T---C-TA---AG---
260 CACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
3543375 ------A-T-T----T--GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
325 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* * * *
3543426 TGGTGCCGTATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCACCGGAGAACTTAATCGGTGG
390 TGGTGCCGCATTTTTCTTCGCC-GGGCACCATCGTCGGAGCATCACCGGAGAACCTGATC-GCGG
* *
3543491 CATTGGGGTTCCGGCGATCAGGGGGTC-GGGGG-GTGCACACATGATGTGCGATGGGTGCTGGTA
453 CATTGGGGTTCCGGCGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * * *
3543554 CTTGGCCCTTATATTGGCTCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCTTTAAATAGC
518 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
3543619 ATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAATGTCTGAAATGGGGACAGTTTTTTC
583 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
3543684 AAATGGTCACAAAATGTTGTACACTTCGAGTTTTGAGCTGAA-TTTTTTGTGCATGCCAACAAAA
648 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * **
3543748 ATACAAGGATCACATCTACCAAGTTTGGGGGCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTT
713 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCC
* * * * *
3543813 GAACCGCAAAAAGTTTCAAAAATCGTGACAAATAGAAAATGAGTCATCTTGCCATGAAACTTCAT
777 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * *
3543878 GTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAGAATGGCATTAGCAAGC
842 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGT
* *
3543937 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTC
* * * * * **
3544002 TCTCTGGCTGGCATA--G--TG-CCCG---G-CCGCCCACTCATTTCATCGGTTGGCTTAGGCAT
66 TCTCTGGCCGACGTAGTGCCTGCCCCGCCCGTCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCAT
* * * * **
3544058 ACAGAGTTCATTCCCAATCTAAGATCAGACTGGACTGAGGGTTGCGGTAGCAAGATCAGTTGCA-
131 ACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCAGCAGCAC
* * ** * *
3544122 G-A-A-GGGGACCCGGTCGATCCTCGGCTTGCGCATCCCATCCCTCTGGTCGGCTGAGCGCCCGT
196 GCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
*
3544184 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
261 ACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * **
3544249 TACCCAGTCTGAGATCAGACCAGACCGAGGGTTATGGCAGCA
326 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
3544291 TCATCGAAGA
Statistics
Matches: 5782, Mismatches: 658, Indels: 416
0.84 0.10 0.06
Matches are distributed among these distances:
861 110 0.02
862 305 0.05
863 224 0.04
864 117 0.02
865 137 0.02
866 4 0.00
867 3 0.00
868 4 0.00
869 452 0.08
870 8 0.00
871 1 0.00
873 20 0.00
874 120 0.02
875 10 0.00
876 2 0.00
877 5 0.00
879 3 0.00
880 2 0.00
881 2 0.00
883 1 0.00
885 2 0.00
887 56 0.01
888 1 0.00
889 1 0.00
890 3 0.00
891 3 0.00
892 215 0.04
893 272 0.05
894 48 0.01
895 333 0.06
896 65 0.01
897 16 0.00
898 132 0.02
899 244 0.04
900 252 0.04
901 239 0.04
902 10 0.00
903 20 0.00
904 431 0.07
905 139 0.02
906 785 0.14
907 159 0.03
908 3 0.00
909 1 0.00
911 7 0.00
913 3 0.00
916 5 0.00
918 2 0.00
920 4 0.00
921 4 0.00
924 2 0.00
926 2 0.00
927 2 0.00
929 2 0.00
932 4 0.00
933 4 0.00
935 2 0.00
936 2 0.00
937 4 0.00
939 1 0.00
940 1 0.00
942 7 0.00
945 3 0.00
946 2 0.00
947 48 0.01
948 138 0.02
949 417 0.07
950 22 0.00
953 8 0.00
955 1 0.00
957 125 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTC
TCTCTGGCCGACGTAGTGCCTGCCCCGCCCGTCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCAGCAGCAC
GCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
ACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
GGTGCCGCATTTTTCTTCGCCGGGCACCATCGTCGGAGCATCACCGGAGAACCTGATCGCGGCAT
TGGGGTTCCGGCGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCGAAC
CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGT
Found at i:3539775 original size:26 final size:26
Alignment explanation
Indices: 3539739--3539791 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3539729 GTTGACGTTG
3539739 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
3539765 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
3539791 G
1 G
3539792 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:3540252 original size:27 final size:26
Alignment explanation
Indices: 3540212--3540307 Score: 111
Period size: 26 Copynumber: 3.7 Consensus size: 26
3540202 ACTCCTTCCG
* *
3540212 AAAAAATTTTAAAAATCCCGAACTGT
1 AAAAAGTTTCAAAAATCCCGAACTGT
** *
3540238 AAAAAGTTTCAAAAATCGATGAACTCT
1 AAAAAGTTTCAAAAATC-CCGAACTGT
* * *
3540265 AAAAAGTTTCAAAAATTCCAAACTGC
1 AAAAAGTTTCAAAAATCCCGAACTGT
3540291 AAAAAGTTTCAAAAATC
1 AAAAAGTTTCAAAAATC
3540308 ATGAAAAATA
Statistics
Matches: 57, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
26 35 0.61
27 22 0.39
ACGTcount: A:0.51, C:0.16, G:0.08, T:0.25
Consensus pattern (26 bp):
AAAAAGTTTCAAAAATCCCGAACTGT
Found at i:3540279 original size:53 final size:52
Alignment explanation
Indices: 3540212--3540312 Score: 148
Period size: 53 Copynumber: 1.9 Consensus size: 52
3540202 ACTCCTTCCG
* * *
3540212 AAAAAATTTTAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCGATGAACTCT
1 AAAAAATTTCAAAAATCCCAAACTGCAAAAAGTTTCAAAAATC-ATGAACTCT
* *
3540265 AAAAAGTTTCAAAAATTCCAAACTGCAAAAAGTTTCAAAAATCATGAA
1 AAAAAATTTCAAAAATCCCAAACTGCAAAAAGTTTCAAAAATCATGAA
3540313 AAATAAAAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
52 5 0.12
53 38 0.88
ACGTcount: A:0.51, C:0.15, G:0.09, T:0.25
Consensus pattern (52 bp):
AAAAAATTTCAAAAATCCCAAACTGCAAAAAGTTTCAAAAATCATGAACTCT
Found at i:3540322 original size:27 final size:26
Alignment explanation
Indices: 3540237--3540321 Score: 84
Period size: 26 Copynumber: 3.2 Consensus size: 26
3540227 TCCCGAACTG
**
3540237 TAAAAAGTTTCAAAAATCGATGAACTC
1 TAAAAAGTTTCAAAAATC-ATGAAAAC
**
3540264 TAAAAAGTTTCAAAAAT--TCCAAAC
1 TAAAAAGTTTCAAAAATCATGAAAAC
*
3540288 TGCAAAAAGTTTCAAAAATCATGAAAAA
1 T--AAAAAGTTTCAAAAATCATGAAAAC
3540316 TAAAAA
1 TAAAAA
3540322 ACGAGTCGTC
Statistics
Matches: 47, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
24 4 0.09
26 21 0.45
27 17 0.36
28 5 0.11
ACGTcount: A:0.55, C:0.13, G:0.08, T:0.24
Consensus pattern (26 bp):
TAAAAAGTTTCAAAAATCATGAAAAC
Found at i:3540724 original size:26 final size:26
Alignment explanation
Indices: 3540688--3540740 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3540678 GTTGACTTAG
*
3540688 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3540714 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3540740 G
1 G
3540741 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3542484 original size:26 final size:26
Alignment explanation
Indices: 3542448--3542500 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3542438 GTTGACTTAG
*
3542448 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3542474 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3542500 G
1 G
3542501 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3544238 original size:26 final size:26
Alignment explanation
Indices: 3544209--3544258 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
3544199 GTTGACTTAG
*
3544209 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
3544235 GCATACGGAGTTCATACCCAGTCT
1 GCATACGGAGTTCATACCCAGTCT
3544259 GAGATCAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:3545883 original size:26 final size:26
Alignment explanation
Indices: 3545846--3545898 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3545836 GTTGGCTTAG
*
3545846 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3545872 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3545898 G
1 G
3545899 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:3546394 original size:813 final size:813
Alignment explanation
Indices: 3544826--3546457 Score: 2421
Period size: 813 Copynumber: 2.0 Consensus size: 813
3544816 TCTCTTTGGC
* * * *
3544826 TGGCATAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGTATACAAAGTTCATTC
1 TGGCATAATGCCCGCCCGCCCGCCCGCTCGTGTCATCAGTTGGCTTAGGCATACAAAGTTCATTC
* * * *
3544891 CCAGTCTAAGATTGGACCAGACCGAGGGTTGCGATAGTAGCATCGGTAGCACACAGAAGGGGACC
66 CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGAAGCATCGGCAGCACACAGAAGGGGACC
* * ** * ** *
3544956 CGACCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGTATGCTCATTTCGT
131 CGACCGATCCTCGACTTACGCATCCCGCCCCTCTAGCCGGCTGAGCACCCGCACACACATTTCGT
*
3545021 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACACGGAGTTCATTCCCAGTCTAAG
196 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACACGAAGTTCATTCCCAGTCTAAG
* * * * *
3545086 ATTGGACCGGATCAAGGTTTGCGGCAACACATGTTGGGCTCGAGCATGTGCTGGTGCCGCATTTT
261 ATCGGACCGAACCAAGGGTTGCGGCAACACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTT
** * * * *
3545151 TCTTCGTCGGGGCACCATCGTTGGAGTATCGCTATAGAACCTGACCAGCAGCATTGGGGTTCCGA
326 TCTTCGTCGGGGCACCATCGCCGGAGCATCACCAGAGAACCTGACCAGCAGCATTGGGGTTCCGA
*
3545216 CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
391 CGATCCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
3545281 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACAGACACCCTCTTAAAGAGCATTTGAGATTTT
456 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACACACACCCCCTTAAAGAGCATTTGAGATTTT
*
3545346 ACAGGTTTGGTGCCAATAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCACAA
521 ACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCACAA
* * * *
3545411 AATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTGTATGCATGCCAACAAAAATACAAGGATCA
586 AAGCTTGTACACTTCAAGTCTTTAGCTGAATTTTTGTATGCATGACAACAAAAATACAAGGATAA
3545476 CGTCTACCAAGTTTGGAGCCAAAACTCCCTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAA
651 CGTCTACCAAGTTTGGAGCCAAAACTCCCTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAA
** **
3545541 GTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGTTTTAA
716 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAA
* **
3545606 GGGACCATTGTATAAATTTACAAGCCATAAAAA
781 GAGACCATTGTATAAATTTACAAGAAATAAAAA
* * **
3545639 TGGCATAATGCCCGCCTGCCCGCCCGCTCGTGTCCTCAGTTGGCTTAGGCATACGGAGTTCATTC
1 TGGCATAATGCCCGCCCGCCCGCCCGCTCGTGTCATCAGTTGGCTTAGGCATACAAAGTTCATTC
* * *
3545704 CCAGTCTAAGATCGGATCAGACCGAGGGTTGC-AGCAGCAAG-ATTGGCAGCACGCAG-AGCGGG
66 CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGA-CAG-AAGCATCGGCAGCACACAGAAG-GGG
** * * * * *
3545766 ACCCGGTCGATCC-CTGATTTTCGCATCCCGCCCCTCTAGCCGGTTGAGCACCTGCACACACGTT
128 ACCCGACCGATCCTC-GACTTACGCATCCCGCCCCTCTAGCCGGCTGAGCACCCGCACACACATT
* *
3545830 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTC
192 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACACGAAGTTCATTCCCAGTC
* * * * *
3545895 TAAGATCGGACCGAACCGAGGGTTGCGGTAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCA
257 TAAGATCGGACCGAACCAAGGGTTGCGGCAACACATGCTGGGCTCGAGCATGTGCTGGTGCCGCA
* * *
3545960 TTTTTCTTCGTCTGGGCACCATCGCCGGAGCATCACCGGAGAACCTGA-CAGACGGCATTGGGGT
322 TTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCAGAGAACCTGACCAG-CAGCATTGGGGT
* *
3546024 TCCGGCGATCCGGGGGGTCGGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
386 TCCGACGATCCGGGGGGCCGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* *
3546089 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAA-CACTCACACCCCCTTAAAGAGCATTTGA
450 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACACACACCCCCTTAAAGAGCATTTGA
* * *
3546153 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
515 GATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGG
* * *
3546218 TCACAAAAGCTTGTACACTTCGAGTCTTTAGCTGAATTTTTTTGTGCATGACAACAAAAATACAA
580 TCACAAAAGCTTGTACACTTCAAGTCTTTAGCTGAATTTTTGTATGCATGACAACAAAAATACAA
* * **
3546283 GGATAACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCG
645 GGATAACGTCTACCAAGTTTGGAGCCAAAACTCCCTCCAAAAAAATTTTAAAAAATCCTGAACCG
*
3546348 TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
710 TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAG
*
3546413 GCTTAAGAGACCATTGTATGAATTTACAAGAAATAAAAA
775 GCTTAAGAGACCATTGTATAAATTTACAAGAAATAAAAA
3546452 TGGCAT
1 TGGCAT
3546458 TGGCACGTAG
Statistics
Matches: 730, Mismatches: 83, Indels: 12
0.88 0.10 0.01
Matches are distributed among these distances:
812 7 0.01
813 643 0.88
814 80 0.11
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (813 bp):
TGGCATAATGCCCGCCCGCCCGCCCGCTCGTGTCATCAGTTGGCTTAGGCATACAAAGTTCATTC
CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGAAGCATCGGCAGCACACAGAAGGGGACC
CGACCGATCCTCGACTTACGCATCCCGCCCCTCTAGCCGGCTGAGCACCCGCACACACATTTCGT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACACGAAGTTCATTCCCAGTCTAAG
ATCGGACCGAACCAAGGGTTGCGGCAACACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTT
TCTTCGTCGGGGCACCATCGCCGGAGCATCACCAGAGAACCTGACCAGCAGCATTGGGGTTCCGA
CGATCCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACACACACCCCCTTAAAGAGCATTTGAGATTTT
ACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCACAA
AAGCTTGTACACTTCAAGTCTTTAGCTGAATTTTTGTATGCATGACAACAAAAATACAAGGATAA
CGTCTACCAAGTTTGGAGCCAAAACTCCCTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAA
GTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAA
GAGACCATTGTATAAATTTACAAGAAATAAAAA
Found at i:3548112 original size:900 final size:896
Alignment explanation
Indices: 3545648--3551657 Score: 7462
Period size: 902 Copynumber: 6.7 Consensus size: 896
3545638 ATGGCATAAT
* * * *
3545648 GCCCGCCTGCCCGCCCGCTCGTGTCCTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
1 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
3545713 GATCGGA-TCAGACCGAGGGTTGCAGCAGCAAGATTGGCAGCACGCAGAGCGGG-ACCCGGTCGA
66 GATCAGACT-GGACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAG-GGGAACCC-GCCGA
* ** * * * * * * * *
3545776 TCCCTGATTTTCGCATCCCGCCCCTCTAGCCGGTTGAGCACCTGCACACACGTTTCGTGGGTTGG
128 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* *
3545841 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGAC
193 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* *
3545906 C-GAACCGAGGGTTGCGGTAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCG
258 CAG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* *
3545970 TCTG-GGCACCATCGCCGGAGCATCACCGGAGAACCTGACAGACGGCATTGGGGTTCCGGCGATC
322 TC-GAGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT-
3546034 CGGGGGGTCGGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
385 CGGGGGG-CGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
3546099 GCCCCCTATCCCTCATCAAACCTC-A-ACACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
448 GCCCCCTATCCCTCATCAAACCTCGAGA-ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
3546162 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAG
512 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
3546227 CTTGTACACTTCGAGTCTTTAGCTGAATTTTTTTGTGCATGACAACAAAAATACAAGGATAACGT
577 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* *
3546292 CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTT
642 CTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
*
3546357 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAG
707 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
** * *
3546422 ACCATTGTATGAATTTACAAGAAATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
772 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-GCAAAAATATGAAGATGTGCCTA
* * * * ** *
3546487 AACCCACCTACAACCCTATCAATCCATGGCTTGCGCATCCCGTCTCTCTGGTCGGTATAGT
836 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGC
* *
3546548 GCCCGCCCGTCCGTCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGT
1 GCCCGCCCG--C--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* ** * * * *
3546613 CTAAGATCAGA-TCGGAC-CATGGGTTGTGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCTGG
62 CTAAGATCAGACT-GGACTGA-GGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGAACC-CG
* * * * * * * * *
3546676 TCGATCCCCGGCTTGGGCATCTCACCCCTCTGGTCGGTTGAGTGCCCGCATGCTCATTTCGTGGG
124 CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * *
3546741 TTGACTTAGGCAAATA-G-AGTTCATTCCCAGTCTAACCATACAGAGTACATTCCCAGTCTAAGA
189 TTGACTTAGGC--ATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * ** * * * *
3546804 TCGGACCGGACCGAGGGTTTCGATAGCACATGCTGGGTTTGAGCATGTGCTGGTGCTGCATTTTT
252 TCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * ** * * *
3546869 CTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTCCGGC
317 CTTCGTCGAGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
*
3546934 GATCGGGGGGCGGGGGGGGGGGTGTGCGCACATGATGAGCGATGGGTGCTGGTACTTGGCCCTTA
382 GATCGGGGGGC----GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
** * *
3546999 TATTTTCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTT
443 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
3547064 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGACACA
508 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * *
3547129 AAATATTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAAACAAGGATC
573 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
** * * *
3547194 ACGTCTACCATTTTTGGGGCCAAAACTCCTTAAGAAAAAATTTAAAAAAATCCCGAACCGCAAAA
638 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
* *
3547259 AGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTACCATGAAACTTCACGTGAAGGCTTA
703 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
3547324 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-CATAGAAATATGAAGATGT
768 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGCA-A-AAATATGAAGATGT
* * * *
3547388 GCCTAAACCCACTTGCCACCCTATCGATCCACGGCTTGCGCATCCCGTTTCTCTGGTCGGCGTAG
831 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
3547453 C
896 C
* * * *
3547454 GTCCACCCGCCCGCTCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
1 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * **
3547519 GATCGGACTGGACTGAGGGTTACAGCAACAGGATCGGCAGCATGCGGAGGGGAAACTAGCCGATC
66 GATCAGACTGGACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGG-AACCCGCCGATC
* * * * *
3547584 CCTGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATCGGTTGACT
130 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* *
3547649 TAGGCATACGAAGTTCATTCCCAGTCGAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCA
195 TAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
* * *
3547714 GACTGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCG
260 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* *
3547779 AGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCGAGG
325 AGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GG
*
3547844 GGGCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCC
389 GGGCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
3547909 CTATCCCTCATCAAACCTCGAGAACTCACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTG
453 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
**
3547974 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTGCAAAATCTTGTA
518 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * *
3548039 CGCTTCGAATTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
583 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * *
3548104 AGTTTGGGGCCACAACTCCTTCCA-AAAAAATTTAAAAAAATCCCAAACCGAAAAAAGTTTCAAA
648 AGTTTGGGGCCAAAACTCCTT-CAGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
* * *
3548168 AATCGTGAAAAATAAAAAACGAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
712 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
3548233 TGTATGAATTTACAACCCATAAAAATGGTATTGGCA-CATAGAAATATGAAGATGTGCCTAAACC
777 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGCA-A-AAATATGAAGATGTGCCTAAACC
* * *
3548297 CACCTATCACCCTATCGATCCACGGCTTGCGCATCCCGTATCTCTGGCCGACGTAGTGCCC
840 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--C
* * * * * * *
3548358 TCCCGCCTGCCCGCCCACTCATTCCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAA
1 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * ** * *
3548423 GATCAGACTGAATTGAGGGTTGCGGTAGCAGGATCGGTAGCACATAGAGGGGGACACGACCGATC
66 GATCAGACTGGACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGAACCCG-CCGATC
* * * * * * *
3548488 CCCGGCTTGCGCATCCCACCCCTCTAGCAGGCTGAGTGGCCGGACGCTCATTTCGTGGGTTGACT
130 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * * * *
3548553 TAGGCTTACGGAGTACATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCG
195 TAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
* * * * ** * *
3548618 GATCGAGGGTTACGGCAGCACGTGTTGGGCTAAGGCTTGTGTTGGTGCCGCATTTTTCTTCGTCG
260 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* ** * * * *
3548683 AGGCACCATCGCCAGAGCATTGCCGGAGAACCTGGCCGATGGCATTAGGGTTCCGACGATCAGGG
325 AGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG
* * * **
3548748 CGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGCTACTCAGCCCTTATATTGGCCCCCT
390 GGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
3548813 ATCCTTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
455 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
3548878 ACCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAATCTTGTACA
520 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* **
3548942 CTTCGAGTTTTTAGCTGAATTTTTTTGTTCACACCAACAAAAATACAAGGATCACGTCTACCAAG
585 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* ** * ** * * **
3549007 TTTGGGACCAAAACT-CTTTTGAAAAAAATTTTTAAAAATCTTGACCCGTAACAAG-TTC-AACC
650 TTTGGGGCCAAAACTCCTTCAG-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* * * * *
3549069 TCGT-AAAAATAG--AAC-CGCCATCTTGCCGCATG-AACTTCACGTCGAAGGCTCAAGGGACCA
714 TCATGAAAAATAGAAAACGAGTCGTCTTG-C-CATGAAACTTCACGT-GAAGGCTTAAGGGACCA
*
3549129 TTGTATG--TTTACAAGCCATTAAAAT-GCATTGGCATGCAAAAATATGGAAGATGTGCCTAAAC
776 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-GCAAAAATAT-GAAGATGTGCCTAAAC
* *** * **
3549191 CCA-CTACCACCCTATC--T--AAGGCTTGCGCATCCTACCTCTAATGG--GGAATAGCAC
839 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT-CTGGCCGGCGTAG--C
* * * * *
3549245 GCCCG-CCACCCGTCGGCTC--ATCG-CAGATT-GCTTAGGC--A---A---CATT-CCAGTCT-
1 GCCCGCCCGCCCGCCCGCTCGTTTCGTC-GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * *
3549295 AGATC-GA-TCG--T-CGGGTTGCAGCAGTAGCATC-GCA--A--C--AGGGGAGA-TCGATCGA
65 AGATCAGACTGGACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGA-ACCCG-CCGA
* * * * *
3549347 TCCCTGAC-TGCGCA----GCCCATCTGGCTGGCTGAGCGCCCGCATGCTCGTTT-GATGGGTTG
128 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG-TGGGTTG
** * *
3549406 -CTTAGGCATAACGGAAGTTCATTCCCAGTCTAAGCATACAAAAGTTCATTTCGAGTCTAAGATC
192 ACTTAGGCAT-AC-GAAGTTCATTCCCAGTCTAAGCATAC-GGAGTTCATTCCCAGTCTAAGATC
** * * * * * *
3549470 GGACTGGACCAAGGGTTGTGGCAGCCCATGCTGGGCTCGGGTAGGTGCTGGTGTCGCA-TTTTCT
254 GGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-
** * * * * **
3549534 TTCACCGGGGCACCATCACCGGAGCATCATCGAAGAACCTGACCGGTGGCATTGGGGTTCCGACG
318 TTCGTCGAGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
3549599 ATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
383 ATCGGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
3549664 GGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACA
447 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
3549729 GGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
512 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
*
3549794 CTTGTACACTTCGAGTTTTTAGCTGAATTTGTTTGTGCATGCCAACAAAAATACAAGGATCACGT
577 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* ** * *
3549859 CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTTGAACTGTAAAAGGTT
642 CTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
* * *
3549924 TCAAAAATCATGAAAAATAGAAAATGAGTTGTCTAGCCATGAAACTTCACGTGAAGGCTTAAGGG
707 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
3549989 ACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGCAAAAATAGGAAGATGTGCCTA
772 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-GCAAAAATATGAAGATGTGCCTA
* * * *
3550054 AAGCCACCTACCACCCTATCGATCCACGACTTGCGCATCCTGTCTCTCTGGCCGGCATA--
836 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGC
* *
3550113 G--TGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
1 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
3550176 GATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGACAGCATGCAGAGGGGGACCCGACCGATC
66 GATCAGACTGGACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGAACCCG-CCGATC
* * ** * *
3550241 CCCGGATTGTGCATCATGCCCCTCTGGCAGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
130 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * * *
3550306 TAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTTATTCTCAGTCTAAGATTGAACTA
195 TAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
* *
3550371 GACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCG
260 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* *
3550436 AGGCACCATCGTCGGAGCAT-AGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
325 AGGCACCATCGCCGGAGCATCA-CCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GG
* * * * *
3550500 GGGGCCGGGGAGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTTGTCCATATATTGGCCC
388 GGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * * * *
3550565 CCTAACCTTCATCAAACCTTGAGAGCTCACACCCCCTTAAAGAGCATTTGTGATTTTACAGGTTT
452 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
3550630 GCTGCCAGTAGCCAATAAATTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTGGT
517 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
3550695 ACACTTCCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
582 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
**
3550760 AAGTTTGGGGCCAAAACTCCTTCCA-AAAAAATTTTAAAAAATCCCGAATTGTAAAAAGTTTC-A
647 AAGTTTGGGGCCAAAACTCCTT-CAGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
* *
3550823 AATTCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
711 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *
3550888 TTGTATGAATTTAAAAGCCATAAAAATGGCCTTGGCAGGCAAAAATATGAAGATGTGCCTAAACC
776 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-GCAAAAATATGAAGATGTGCCTAAACC
* * * ** *
3550953 AACCTACCACCCTATCGATCCACGTCAT-CGCATCCCGTCTCTCTGGCCAACGTAGT
840 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGC
* * *
3551009 GCCCGCCCGCCTACTCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAATTCATTCCTAGT
1 GCCCGCCCG-C--C-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* ** ** * * * ** * * *
3551074 CTAAGATCGGACCAGACCAAGGGTTAC-GATAGCAAGATCGATAGCACGTAAAGGGGGACCCGAC
62 CTAAGATCAGACTGGACTGAGGGTTGCAG-CAGCAGGATCGGCAGCACGCAGAGGGGAACCCG-C
* * * *
3551138 CAATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGTTGAGCGCCTGCACGCTCGTTTCGTGGGT
125 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * * *
3551203 TGACTTAGGCGTATGGAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
190 TGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * **
3551268 AACCTA-ACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCAAATTTTTCT
255 GACC-AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * ** ** ** * * * * *
3551332 TCGTCGGGGCGCCATCATCAAAGCATCGTCGGAGAACCTGACTGGCGGCATTAGGGTT-TGGCGA
319 TCGTCGAGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
* * *
3551396 TCGGGGGGGCCGGGGGGTGTGCGCAGATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTG
384 TC-GGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
3551461 GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACAG
448 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
3551526 GTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
513 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
*
3551591 TTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
578 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
3551656 TA
643 TA
3551658 AGATGTGCCT
Statistics
Matches: 4424, Mismatches: 568, Indels: 236
0.85 0.11 0.05
Matches are distributed among these distances:
855 9 0.00
856 36 0.01
857 29 0.01
858 123 0.03
859 169 0.04
860 121 0.03
861 25 0.01
862 6 0.00
863 8 0.00
864 26 0.01
865 14 0.00
866 41 0.01
867 45 0.01
868 16 0.00
869 8 0.00
870 12 0.00
871 19 0.00
872 8 0.00
873 5 0.00
874 7 0.00
875 5 0.00
878 5 0.00
879 7 0.00
880 5 0.00
881 3 0.00
882 1 0.00
883 9 0.00
884 5 0.00
885 15 0.00
886 11 0.00
887 7 0.00
888 1 0.00
889 3 0.00
890 18 0.00
891 4 0.00
892 17 0.00
893 5 0.00
894 49 0.01
895 309 0.07
896 348 0.08
897 70 0.02
898 20 0.00
899 8 0.00
900 716 0.16
901 125 0.03
902 791 0.18
903 31 0.01
904 633 0.14
905 74 0.02
906 401 0.09
907 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
GATCAGACTGGACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGAACCCGCCGATCC
CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
AGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGA
GGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
GCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
TTGGGGCCAAAACTCCTTCAGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
TGAATTTACAAGCCATAAAAATGGCATTGGCAGCAAAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGC
Found at i:3548597 original size:26 final size:26
Alignment explanation
Indices: 3548559--3548608 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
3548549 GACTTAGGCT
*
3548559 TACGGAGTACATTCCCAGTCTAAGCA
1 TACGAAGTACATTCCCAGTCTAAGCA
*
3548585 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTACATTCCCAGTCTAAG
3548609 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (26 bp):
TACGAAGTACATTCCCAGTCTAAGCA
Found at i:3550339 original size:26 final size:26
Alignment explanation
Indices: 3550309--3550361 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3550299 GTTGACTTAG
3550309 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* * *
3550335 GCATACGGAGTTTATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3550361 G
1 G
3550362 ATTGAACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:3552846 original size:26 final size:26
Alignment explanation
Indices: 3552816--3552868 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3552806 GTTGACTTAG
*
3552816 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
3552842 GCATACAGAGTTTATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3552868 G
1 G
3552869 GTCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3553752 original size:26 final size:26
Alignment explanation
Indices: 3553723--3553772 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
3553713 GACTTTGGTG
*
3553723 TACGGAGTTTATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
3553749 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
3553773 ATCGGACCTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:3554115 original size:901 final size:886
Alignment explanation
Indices: 3551954--3554163 Score: 3124
Period size: 890 Copynumber: 2.5 Consensus size: 886
3551944 GTTGACTTAG
* * * * *
3551954 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTAAGGCAGCGCATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
3552019 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCAGGGCACCATCGCCAGAGCATCATCGGAGA
66 CTCGGGCATGT-CTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCAGAGCATCGTCGGAGA
* * * *
3552084 A-CTAGA-TCGGCGACATTGGGGTTCCAACGATCAGGGGGGCCGGGGGTGTGCGCACATGATGTG
130 ACCT-GACT-AGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGTGTGCGCACATGATGTG
* * * *
3552147 CGATGGCTGCTGGTACTTGGCCATTATATTAGCCCCCTATCCCTCATCAAACCTCGATAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
3552212 ACCCGCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
3552277 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTGTTTTA
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTG
**
3552342 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGGAAAACTCCTTCCAAAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * **
3552407 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTT
452 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTAATCTT
*
3552472 GCCATGAAACTTCACATGAAGGTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAG
517 GCCATGAAACTTCACATGAAGGTTAAAGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCAG
*
3552537 TGGCAGGCAGAAATAGGAAGAAGTCCCTAAAGCCACCTACCACCCTATCGATCCACGGCTTGCGC
582 TGGCAGGCAGAAATAGGAAGAAGTCCCTAAAGCCACCTACCACCCTATCGATCCACGGCATGCGC
3552602 ATCCCATCTCTCTGGCCGGCACAGTGCCCGCCCGCTCGTTTCGTCGGTAGGCTTAGGTATACGGA
647 ATCCCATCTCTCTGGCCGGCACAGTGCCCGCCCGCTCGTTTCGTCGGTAGGCTTAGGTATACGGA
* * ** * * * *
3552667 GTTCATTGCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAAGATCGGCAGCACGCAGA
712 GTTCATTGCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAAGATCGACAGCACACAAA
* * ** *
3552732 GGGGGACCCGACCGATCCCCGGATTGTGCATCATGCCCCTCTGGCAGGCTGAGCGCCGCACGCTC
777 GGGGGACCCGACCAATCCCCAGATTGCACATCACGCCCCTCTGGCAGGCTGAGCGCCGCACGCTC
3552797 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
3552842 GCATACAGAGTTTATTCTCAGTCTAAGGTCGAACCAGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * * * * *
3552907 CTCAGGCTTGTGCTAGTGCCGCATTTTTCTTCACCGAGGCACCATCGTCGGAGCATAGCCGGAGA
66 CTCGGGCATGT-CTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCAGAGCATCGTCGGAGA
* *
3552972 ACCTGAC-CGACGGCATTGGGGTTCCGACGATCGGGGGGGCAGGGGAGGTGTGCGCACATGATGT
130 ACCTGACTAG-CGGCATTGGGGTTCCGACGATCGGGGGGGC-CGGG-GGTGTGCGCACATGATGT
* * * * * * *
3553036 GCAATGGGTGCTGGTACTTTGTCCATATATTGGCCCCCTAACCCTCATCAAACCTTGAGAGCTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
3553101 CACCCCCTTAAAGGGCATTTGTGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
3553166 TGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTT
*
3553231 GTGCATGCCAACAAAGATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
386 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
*
3553296 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTT-AAAATTCATGAAAAATAGAAAACGAGTAATC
451 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAA-TCATGAAAAATAAAAAACGAGTAATC
* *
3553360 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGG
515 TTGCCATGAAACTTCACATGAAGG-TTAAAGGACCATTGTATGAATTTAAAAGCCATAAAAATGG
* * * * *
3553425 CATTGGCAGGCAGAAATATGAAGATGTGCCTAAA-CCAACCTACCACCCTATCGATCCACGTCAT
579 CAGTGGCAGGCAGAAATAGGAAGAAGTCCCTAAAGCC-ACCTACCACCCTATCGATCCACGGCAT
* * * * * *
3553489 GCGCATCCCGTCTCTCTGGCCGACGTAGAGCCCGCCCGCCTGCTCGCCCGCTCGTTTTGTCGGTT
643 GCGCATCCCATCTCTCTGG-C--C---G-G--C-ACAG--TGCCCGCCCGCTCGTTTCGTCGGTA
*
3553554 GGCTTAGGTATACGGAGTTCATT-CCTAGTCTAAGATCAGACCAGACCGAGGGTTACGATAGCAA
696 GGCTTAGGTATACGGAGTTCATTGCC-AGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAA
* * * * *
3553618 GATCGATAGCACACAAAGGGGGACTCGACCAATCCCCAGCTTGCACATCCCGCCCCTCTGGCCGG
760 GATCGACAGCACACAAAGGGGGACCCGACCAATCCCCAGATTGCACATCACGCCCCTCTGGCAGG
* * * ** *
3553683 TTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTTGGTGTACGGAGTTTATTCCCAGTCTAA
825 CTGAGCGCC-GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
3553746 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCTGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
3553811 CTCGGGCATAT-TGGTGCCAAATTTTTCTTCGTCGGGGCACCATCATCAGAGCATCGTCGGAGAA
66 CTCGGGCATGTCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCAGAGCATCGTCGGAGAA
* * **
3553875 CCTGACTAGCGGCATTAGGGTTCTGGTGATCGGGGGGGCCGGGTGGTGTGCGCACATGATGTGCG
131 CCTGACTAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGTGTGCGCACATGATGTGCG
3553940 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
3554005 CCCCTTAAAGAGCATTTGAG-TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAATG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATG
*
3554069 GGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTGTG
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTG
3554133 CATGCCAACAAAAATACAAGGATCACGTCTA
389 CATGCCAACAAAAATACAAGGATCACGTCTA
3554164 AGATGTGCCT
Statistics
Matches: 1159, Mismatches: 139, Indels: 37
0.87 0.10 0.03
Matches are distributed among these distances:
887 1 0.00
888 137 0.12
889 9 0.01
890 333 0.29
891 111 0.10
892 1 0.00
894 1 0.00
897 1 0.00
898 1 0.00
899 37 0.03
900 39 0.03
901 161 0.14
902 77 0.07
903 138 0.12
904 112 0.10
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (886 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCAGAGCATCGTCGGAGAA
CCTGACTAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
TAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTAATCTTGCCA
TGAAACTTCACATGAAGGTTAAAGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCAGTGGC
AGGCAGAAATAGGAAGAAGTCCCTAAAGCCACCTACCACCCTATCGATCCACGGCATGCGCATCC
CATCTCTCTGGCCGGCACAGTGCCCGCCCGCTCGTTTCGTCGGTAGGCTTAGGTATACGGAGTTC
ATTGCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAAGATCGACAGCACACAAAGGGG
GACCCGACCAATCCCCAGATTGCACATCACGCCCCTCTGGCAGGCTGAGCGCCGCACGCTCGTTT
CATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:3556435 original size:26 final size:26
Alignment explanation
Indices: 3556399--3556451 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3556389 GTTGACTTAG
3556399 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3556425 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3556451 G
1 G
3556452 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3558907 original size:26 final size:26
Alignment explanation
Indices: 3558878--3558932 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
3558868 GTGGGTTGAC
3558878 CTAGGCATACGGAGTTCATTCCCAGT
1 CTAGGCATACGGAGTTCATTCCCAGT
*
3558904 CTAGGCATACTGAGTTCATTCCCAGT
1 CTAGGCATACGGAGTTCATTCCCAGT
3558930 CTA
1 CTA
3558933 AGATCAGACT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (26 bp):
CTAGGCATACGGAGTTCATTCCCAGT
Found at i:3560464 original size:26 final size:26
Alignment explanation
Indices: 3560434--3560486 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3560424 GTTGACTTAG
*
3560434 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3560460 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3560486 G
1 G
3560487 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3561538 original size:903 final size:897
Alignment explanation
Indices: 3559627--3564811 Score: 6897
Period size: 903 Copynumber: 5.8 Consensus size: 897
3559617 TGCCATAGCT
* * * *
3559627 CATGTGCTGGTGTCGCATTTTTCTTTGTCGGGGCACCATCATCGGAGCATTGCCGGAGAACCTGA
1 CATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * * *
3559692 CCAACGGTATTGGGGTT-CTAGCGATCGGGGCGACCGGCGGGGGTGTGCGCACATGATGTGCGAT
66 CCAGCGGCATTGGGGTTCCGA-CGATCGGGG-GGCCGG-GGGGGTGTGCGCACATGATGTGCGAT
* * *
3559756 GGGTGCTGGTACTT-GCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACACACCCCC
128 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
3559820 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTATAAAATGGGG
193 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
3559885 ACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTGTGCA
258 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
3559950 TGCCAA-AAAAGATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTTCAAAAAAATT
323 TGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* * * *
3560014 TTAAAAAATCCCAAACCTTAAAAAATTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGTC
387 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * * * *
3560079 ACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGTCATAAAAATGACATTG
452 ATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * *
3560144 GCGCGCAGAAATAAT-ATGATGTGCCTAAACCCACCAACCAGCCGATCGATCCACGGCTTGCGCA
517 GCACGCAGAAAT-ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
3560208 TCCAGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTCCGCCCGCCAGCTCGTTTCGTCGGTTGGCTT
581 TCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * *
3560273 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGG
643 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGCAGCAAGATTGG
* * *
3560338 CAGCACGCAGAGGGGGACCCAATCGATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCGGTTGAGC
708 CAGCACGCAGAGGGGGACCC-ACCGATCCCGA-CTTGCGCATC-CGCCCCTCTGGCCGGCTGAGC
* * *
3560403 GCAC-ACACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACG
770 GC-CTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *** * * * *
3560467 GTGTTCATTCCCAGTCTAAGATCAGATTGGACCAAGGGTTGTGGCAGCACAAGCTAGGCTCGGG
834 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* *
3560531 CATGTGCTGGTGTCACTTTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGA
1 CATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * * * **
3560596 CCAACGACATTTGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCATTTGATGTGCGATGGG
66 CCAGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
3560661 TGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
131 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
3560726 TAAAGAGCATTTGTGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAATGGGGACA
196 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
3560791 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
261 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
3560856 CAACAAAAATACAAGGATCACGCCTACCAAGCTTAGGGCCAAAACTCCTTCCAAAAAAATTTTAA
326 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
* * * * *
3560921 AAAATCCCGAACCGTAAAATGTTTCGAAAATCGTGAAAAAGAGAAAATGAGTCGTCTTGCCATCA
391 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
3560986 AACTTCATGTGAATGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
456 AACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *
3561051 GCAGAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCCACGGGTTGCGCGTCCCG
521 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
3561116 TCTCTCTGGCCGGCGTAGTGCCCGCCAGCCTGCCCGCCCGCTCGTTTCGTCGATTAGCTTAGGCA
586 TCTCTCTGGCCGGCGTAGTGCCCGCC--CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * ** * * * * * *
3561181 TACAGAGTTCATTCCCTGTCTAAGATTGGATCAAACTGAGGGTTATGGCAGCAGGATTGGTAGTA
648 TACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGCAGCAAGATTGGCAGCA
* * * * *
3561246 CGCAGAGAGGGACCCGACCAATCCCTGACTTGCACATCC-CACCCTCTAGACGGCTGAGCGCCTG
713 CGCAGAGGGGGACCC-ACCGATCCC-GACTTGCGCATCCGC-CCCTCTGGCCGGCTGAGCGCCTG
* * *
3561310 TACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCAAAGCATACGGAGTTC
775 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* *
3561375 ATTCCCAGTCTAAGATCGGACCAGACCGAGGCTTGCGGTAGCACATGCTGGGCTCGGG
840 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * * *
3561433 CATGTGCTAGTGCCACATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGA
1 CATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * *
3561498 CCGGCGGCATTGGGGTT-CTAGCGATCTGGGGGGTCGGGGGGGGTGTGCGCACATGATGTGCGAT
66 CCAGCGGCATTGGGGTTCCGA-CGATC-GGGGGG-CCGGGGGGGTGTGCGCACATGATGTGCGAT
* * *
3561562 GGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAGCCTTGAGAACTCACACCC
128 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
3561627 CCTT-AAGCAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
193 CCTTAAAG-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
3561691 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGACTTTTTTTGTGC
257 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * **
3561756 ATGCCAACAAAAACACAAGGATCACGTCCACCAAGTTTGGGGCAAAAACTCCTTCTGAAAAAATT
322 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* * *
3561821 TT-AAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
387 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* *
3561885 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTG
452 ATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
3561950 GCACGTAGAAATATGAAGATGTACCTTAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
517 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * * ** *
3562015 CCCGTCGCTCTAGCCAGCATAGT----G-CCCGCCCGCCTGCTCATTTTATCGGTTGGTTTAGGC
582 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* ** * * * * * * * *
3562075 ATACGAAGTTCATTCCCAGTCTAAGATTTGACCAGATCAAGGGTTGCGGTACCAAGATCGGCAGT
647 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGCAGCAAGATTGGCAGC
* * * * * *
3562140 ATGCAGAGGGGGACCCACCCGATCCGCG-GTTGCGTATCCTGCCCCTCTGGTCGGCTAAGCGCCC
712 ACGCAGAGGGGGACCCA-CCGATCC-CGACTTGCGCATCC-GCCCCTCTGGCCGGCTGAGCGCCT
* * *
3562204 GCACGCTCATTTCGTGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTT
774 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * **
3562269 CATTCCCAGTCTATGATCGGA-CAGGACCGAGGGTTGCAGCAGCACATACTGGGCTCGAA
839 CATTCCCAGTCTAAGATCGGACCA-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * * * *
3562328 CATGTGTTGATGTCACATTTTTCTTCATCGGGGCACCATCCTCGGAGCATCGTCTGAGAACCTGA
1 CATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * *
3562393 CCGGCGGCATAGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGGTGTGCACACATGATGTGCGAT
66 CCAGCGGCATTGGGGTTCCGACGATC-GGGGGGCC--GGGGGGGTGTGCGCACATGATGTGCGAT
* *
3562458 GGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAATCCTCGAGAACTCACACCC
128 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
3562523 CCTTAAAGAGCATTTGAGATTTTATAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
193 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
3562588 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTT---T--A-------GTGCA
258 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* ** *
3562640 TGCCAACAAAAATACAAGGATCATGTCTATAAAGTTTGGGGCCAAAACTCATTCCAAAAAAATTT
323 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
* * * * * *
3562705 TAAAAAATCTCGAATCGCAAAAAGCTTCAAAAATCGTCAAAAATAGAAAACGAGTCGCCTTGCCA
388 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
3562770 TGAAACTTCACGTGAAGGCTT-AAGAGACCATTGTATGAATCTACAAGCCATAAAAATGGCATTG
453 TGAAACTTCACGTGAAGGCTTAAAG-GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* **
3562834 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATTGCTTGCGCAT
517 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
3562899 CCCGTCTCTCTGGCCGGTGTAGTGCCCGCTCGCTCGCCCGCCCGCCCGCTTGTTTCGACGGTTGG
582 CCCGTCTCTCTGGCCGGCGTAGTG--C-C-CG--C-CCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * *
3562964 CTTAGGCTTACGGAGTTAATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTAC-ACAGCATGAT
640 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGCAGCAAGAT
* * * * * *
3563028 TGG-AGCATGGAGAGGGGGACCCAGCCTATCCCCGGCTTGCGCATCCCGCCCCACTGGCCGACTG
705 TGGCAGCACGCAGAGGGGGACCCA-CCGAT-CCCGACTTGCGCAT-CCGCCCCTCTGGCCGGCTG
*
3563092 AGTG-CTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
767 AGCGCCT-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * * * *
3563156 GCAGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGATGCTGGGCTCA
831 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
3563221 GG
896 GG
* * * *
3563223 CATGTGCTGGTGTCACATTTTTCTTCATCGAGGCATCATCGTCGGAGCATCGTCGGAGAACCTGA
1 CATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * * * *
3563288 CCAGCAGTATTGGGGTTCCGACGATCGGGGGGGCCGAGGAGGTGTGCGCACATGATGTACGATGG
66 CCAGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
3563353 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
130 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
3563418 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGAC
195 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
3563483 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATG
260 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* ** *
3563548 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAATTTTTTC
325 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
*
3563613 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAGAGAAAACGAGTCGTCTTGCCATG
390 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
3563678 AAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
455 AAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
3563743 TGCAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
520 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
** * ** * *
3563808 GTCTCTCTGGTTGGTGTAGTGCCCG-CCCGTTCGTCCGCTCGTTTTGTCGGTTGGCTTAGGCATA
585 GTCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
** ** * * *
3563872 TAGAGTTCATTCAAAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAACAAAATTGGCAGCACG
650 CGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGCAGCAAGATTGGCAGCACG
* * * * * *
3563937 CAGAGGGGGGCCCGACCGATGCTCGACCTGCGCATCTCGCCCCTCTGGTCGGTTGAGCG-CTCGT
715 CAGAGGGGGACCC-ACCGAT-CCCGACTTGCGCATC-CGCCCCTCTGGCCGGCTGAGCGCCT-GC
* * *
3564001 ATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCA
776 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * ** * *
3564066 TTCCCAATCTAAGATTGGACCAGACAAAGGGTTGTC-CCAGCACATGCTGGGCTCAGG
841 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG-CGGCAGCACATGCTGGGCTCGGG
* * *
3564123 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGAACCTGA
1 CATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* ** * * * *
3564188 CCGGTAGCATTGGGGTTCCGACGATCGGGGGGACCGGAGGGGTGTGCACACATAATGTGTGATGG
66 CCAGCGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGGTGTGCGCACATGATGTGCGATGG
* * *
3564253 GTGCTGGTGCTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
130 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
3564318 TTAAAAAGCTTTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
195 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * *
3564383 ACTTTTTTGAAATGGTCAAAAACATATTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCTT
260 ACTTTTTTCAAATGGTCACAAA-ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * *
3564447 TCCAACAACAATACAAGGATCACGTCTACCATGTTTCGGGCCAAAACTCCTTCCAAAAAAATTTA
324 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
* ** **
3564512 AAAAAATCCCGAACC-TCAAAAAGTTTCAAAATTTTTGAAAAATAGAAAACGAGTCGTCTCACCA
389 AAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
3564576 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTCATTGG
453 TGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
3564641 CACGTAGATATATGAAGA--T-CCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATC
518 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
3564703 CCGTCTCTCTGGCCAGCGTAGTGCCCACCCACCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAG
583 CCGTCTCTCTGGCCGGCGTAGTG-CC-CGC-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* *
3564768 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGG
645 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGG
3564812 ATTATGGTAG
Statistics
Matches: 3766, Mismatches: 449, Indels: 135
0.87 0.10 0.03
Matches are distributed among these distances:
883 64 0.02
884 193 0.05
892 2 0.00
893 190 0.05
894 41 0.01
895 538 0.14
896 262 0.07
897 65 0.02
898 72 0.02
899 20 0.01
900 610 0.16
901 103 0.03
902 249 0.07
903 736 0.20
904 355 0.09
905 2 0.00
906 261 0.07
907 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
CATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
CCAGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGCAGCAAGATTGGCAGCACGC
AGAGGGGGACCCACCGATCCCGACTTGCGCATCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
AGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
Found at i:3562268 original size:26 final size:26
Alignment explanation
Indices: 3562231--3562281 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3562221 TTTGACTTAG
*
3562231 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3562257 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
3562282 TGATCGGACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:3564062 original size:26 final size:26
Alignment explanation
Indices: 3564026--3564078 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3564016 GTTGACTTAG
*
3564026 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
3564052 GCATGCGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3564078 G
1 G
3564079 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:3565676 original size:26 final size:26
Alignment explanation
Indices: 3565647--3565698 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
3565637 TGACTTAGGC
* *
3565647 ATACGGAGTTTATTCCGAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
*
3565673 ATACGGAGTTCATTCCCATTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
3565699 TTAGATCGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:3567047 original size:713 final size:713
Alignment explanation
Indices: 3565673--3567130 Score: 2159
Period size: 718 Copynumber: 2.0 Consensus size: 713
3565663 GAGTCTAAGA
* * * * * **
3565673 ATACGGAGTTCATTCCCATTCTAAGATTAGATCGGATCGAGGGTTGGGACAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAATCTAAGATTGGATCAGACCGACGGTTACGACAGCACATGCTGGGCT
* * * * * *
3565738 CGAGTATGTGCTGGTGCCTTATTTTTCTTCGTCGAGGCACCATTGCCGGAGCATAACCAGAGAAC
66 CGAGCATGTGCTGGCGCCTCATTTTTCTTCATCGAGGCACCATCGCCAGAGCATAACCAGAGAAC
* *
3565803 CTGACCGACAGCATTAGGGTTCCAGTGATCGGGGGGGCCAGGGGGTGTGCGCAAATGCTGTGCGA
131 CTGACAGACAGCATTAGGGTTCCAGTGATCGGGGGGGCCAGGGGGTGTGCGCAAATGATGTGCGA
* * *
3565868 TGGGTGTTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
196 TGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
3565933 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCCGAAATGGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTATCCGAAATGGG
*
3565998 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAACTGATTGTTTTTTTGC
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGATTGTTTTTTTGC
* * *
3566063 AAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
391 AAGCCAACAAAAATACAAGGATAACATCTACCAAGTTTGGGACCAAAACTCCTTCCAAAAAAATT
*
3566128 TTAAAAAATCCTGAACTGTAAAAAATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTACC
456 TTAAAAAATCCTGAACTGTAAAAAATTCTGAAAATCGTGAAAAATAGAAAACGAGTCG-CTTACC
*
3566193 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
520 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTG
* * *
3566258 GCATGCAAAAATATGAAGATGTGCCTAAGCCCACCTACCATCCTATCGATCCACGGCTTGCGCAT
585 GCATGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
*
3566323 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTA
650 CCCGTCTCTCTGGCCGACATAGT----GCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTA
3566388 GGC
711 GGC
* * *
3566391 ATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGACGGTTACGACGGCATATGCTGGGCT
1 ATACGGAGTTCATTCCCAATCTAAGATTGGATCAGACCGACGGTTACGACAGCACATGCTGGGCT
* ** *
3566456 CGGGCATGTGCTGGCG-CTGCATTTTTCTTCATCG-GGACACCATCGCCAGAGCATCGCCGGAGA
66 CGAGCATGTGCTGGCGCCT-CATTTTTCTTCATCGAGG-CACCATCGCCAGAGCATAACCAGAGA
* * * * * *
3566519 ACCTGATAGACGGCATT-GGGATTTC-GATGTTCGGGGGGGTCGGGGGGTGTGCGCAAATGATGT
129 ACCTGACAGACAGCATTAGGG-TTCCAG-TGATCGGGGGGGCCAGGGGGTGTGCGCAAATGATGT
3566582 GCGATGGGTGCTGCTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
3566646 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CATTAAAGTATCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTATCCGAAA
* *
3566710 TGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGATT-TTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGATTGTTTTT
* * *
3566774 TGTGCATGCCAACAAAAATACAGGGATAACATCTACCAAGTTTGGGACCAAAACTCCTTCCGAAA
387 T-TGCAAGCCAACAAAAATACAAGGATAACATCTACCAAGTTTGGGACCAAAACTCCTTCCAAAA
* * *
3566839 AAATTTTCAAAAAT-CTCGAACCT-TAAAAAGTTCT-ACAAATCATTG-AAAATAGAAAACGAGT
451 AAATTTTAAAAAATCCT-GAA-CTGTAAAAAATTCTGA-AAATC-GTGAAAAATAGAAAACGAGT
*
3566900 -G-TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
512 CGCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
**
3566963 TAGCATTGGCATGCCGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGC
577 TAGCATTGGCATGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
3567028 TTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGTCCGCTCATTTCGTCGGTTGG
642 TTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGG
3567093 CTTAGGC
707 CTTAGGC
* *
3567100 ATATGGAATTCATTCCCAATCTAAGATTGGA
1 ATACGGAGTTCATTCCCAATCTAAGATTGGA
3567131 CTAGATCGAA
Statistics
Matches: 671, Mismatches: 60, Indels: 27
0.89 0.08 0.04
Matches are distributed among these distances:
709 67 0.10
713 149 0.22
715 10 0.01
716 174 0.26
717 89 0.13
718 182 0.27
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (713 bp):
ATACGGAGTTCATTCCCAATCTAAGATTGGATCAGACCGACGGTTACGACAGCACATGCTGGGCT
CGAGCATGTGCTGGCGCCTCATTTTTCTTCATCGAGGCACCATCGCCAGAGCATAACCAGAGAAC
CTGACAGACAGCATTAGGGTTCCAGTGATCGGGGGGGCCAGGGGGTGTGCGCAAATGATGTGCGA
TGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTATCCGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGATTGTTTTTTTGC
AAGCCAACAAAAATACAAGGATAACATCTACCAAGTTTGGGACCAAAACTCCTTCCAAAAAAATT
TTAAAAAATCCTGAACTGTAAAAAATTCTGAAAATCGTGAAAAATAGAAAACGAGTCGCTTACCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGG
CATGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGC
Found at i:3568057 original size:878 final size:859
Alignment explanation
Indices: 3566385--3569027 Score: 2967
Period size: 878 Copynumber: 3.0 Consensus size: 859
3566375 ATCGGTTGGC
* * * * *
3566385 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGACGGTTACGACGGCATATGC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGA-GGTTATGACAGCACATGC
* * *
3566450 TGGGCTCGGGCATGTGCTGGCGCTGCATTTTTCTTCATCGGGACACCATCGCCAGAGCATCGCCG
65 TGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGACACCATCGTCGGAGCATCGCCG
** * * * *
3566515 GAGAACCTGATAGACGGCATTGGGATTTCGATGTTCGGGGGGGTCGGGGGGTGTGCGCAAATGAT
130 GAGAACCTGACCGACGGCATTGGGGTTTCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
*
3566580 GTGCGATGGGTGCTGCTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACT
195 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
3566644 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CATTAAAGTA-TCTG
260 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG-AGTCTG
*
3566707 AAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGATTTTT
324 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTT
* **
3566772 TTTGTGCATGCCAACAAAAATACAGGGATAACATCTACCAAGTTTGGGACCAAAACTCCTTCCGA
389 TTTGTGCA-GCCAA-AAAAATACA-GGATCATGTCTACCAAGTTTGGG-CCAAAACTCCTTCCGA
* ** *
3566837 AAAAATTTT-CAAAAATCTCGAACCTTAAAAAG-TTCTACAAATCATTGAAAATAGAAAACGAGT
450 AAAAATTTTAAAAAAATCTCGAACC-GCAAAAGTTTC-AAAAATCA-TGAAAATAGAAAACGAGT
*
3566900 -G--TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
512 CGTCTTGCCATGAAACTTCACGTTAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
3566962 ATAGCATTGGCATGCCGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGG
577 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
3567027 CTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGTCCGCTCATTTCGTCGGTTG
642 CTTGCGCATTCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGT----TCGTTTCGTCGGTTG
* * * * * *
3567092 GCTTAGGCATATGGAATTCATTCCCAATCTAAGATTGGACTAGATCGAAGGTTGC-AGCAGTAAG
703 GCTTAGGCATACGGAGTTCATTCCC-ATCTAAGATTGGAC-GGATCGAGGGTTGCGA-TAGTAGG
* * * * **
3567156 ATCGACAGCACGCAGAAGGGGACCCGAATGATCCTCAGCTT-ATGCATCCCACCCCTCTGGCTAA
765 ATCGGCAGCACGCAGAGGGGGACCCGAATGATCC-C-GCTTGCT-CATCCCGCCCCTCTGGCCGA
3567220 CTGAGCGCCCGCACGCTCGTTTCATGTCTTGAG
827 CTGAGCGCCCGCACGCTCGTTTCATGTCTTGAG
* * *
3567253 TTAGTCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGTGTTATGACAGCACATGG
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAG-GTTATGACAGCACATGC
* * * * * *
3567318 TGGGCTCGGGCATTTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCA
65 TGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGACACCATCGTCGGAGCATCGCCG
* *
3567383 GAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGCCGGGGAGGTGTGCG
130 GAGAACCTGACCGACGGCATTGGGGTTTCGATGATC-----G--GGGGGGCCGGGG-GGTGTGCG
*
3567448 CACATGATGTGCGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCT
187 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
3567513 CGAGAACTCACCCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
252 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
3567578 GAGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCT
317 GAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
3567643 GATTTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTC
382 GATTTTTTTTGTGC-AGCC-AAAAAAATAC-AGGATCATGTCTACCAAGTTT-GGGCCAAAACTC
* * *
3567708 ATTCCGAAAAAATTTTAAAAAAATCTCAAACCGCAAAAGGTTTCAAAAATCATGAAAATTTGAAA
443 CTTCCGAAAAAATTTTAAAAAAATCTCGAACCGCAAAA-GTTTCAAAAATCATGAAAA-TAGAAA
* *
3567773 ACGAGTCGTCTTGCCATGAATCTTCACGTTAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCC
506 ACGAGTCGTCTTGCCATGAAACTTCACGTTAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
3567838 ATAAAAATGGTATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
571 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* *
3567903 CCATGGCTTGCGCATTCCGTCTCTCTGACCGACGTAGTGCCCGCCCGCCCGTTCGTTTCGTCGGT
636 CCACGGCTTGCGCATTCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTTCGTTTCGTCGGT
* * *
3567968 TGGCTTAGGCATACGGAGTTCGTTACCAGTCTAAGATCGGATCGGATCGAGGGTTGCGATAGTAG
701 TGGCTTAGGCATACGGAGTTCATTCCCA-TCTAAGATTGGA-CGGATCGAGGGTTGCGATAGTAG
* * *
3568033 GATTGGCAGCAC-CTAGAGGGGGACCCGACTGATCCCTGGCTTGCTCATCCCGCCCCTCTGACCG
764 GATCGGCAGCACGC-AGAGGGGGACCCGAATGATCCC--GCTTGCTCATCCCGCCCCTCTGGCCG
** * *
3568097 GTTGAGCGCTCGCACGCTCATTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAG
826 ACTGAGCGCCCGCACG--C---TC----G-T---TT---CAT-----G-TC-TT--GAG
* * * * *
3568156 TCTAAGCATATGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCACATG
1 T-TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGA-GGTTATGACAGCACATG
** ** * * * *
3568221 CTGGGCTCGATCATGCACTGGTGCTGCATTTTT-TGTCATCAGGACACCATCGTCGGAGCTTTGT
64 CTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCT-TCATCGGGACACCATCGTCGGAGCATCGC
* * *
3568285 CGGAGAACCTGACC-ATCGGTATTGGGGTTTC-AGCGATCGGGGGGGCCAGGGGGTGTGCGCACA
128 CGGAGAACCTGACCGA-CGGCATTGGGGTTTCGA-TGATCGGGGGGGCCGGGGGGTGTGCGCACA
* *
3568348 TGATGTGCAAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
191 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * *
3568413 AACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGT
256 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGAGT
* * * * * **
3568478 CTGAAATGGGAACACGTATTTCAAATGGTCACAAAATCTTGTATACTTCAAGTTTTTAGCTGAAA
321 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATT
* * *
3568543 TGTTTTGT---G-----------C-----C-TG-CT---AA-------CAAAAACTCCTTTC-AA
386 TTTTTTGTGCAGCCAAAAAAATACAGGATCATGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAA
* * * **
3568576 AAAAATTTAAAAAAATCCCGAACAGCAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
451 AAAATTTTAAAAAAATCTCGAACCGCAAAAGTTTCAAAAATCATG-AAAATAGAAAACGAGTCGT
* *
3568641 CTTGCCATGAAACTTCACGTGT-AGGCTTAAGGGACCAGTGTATGAATTTACAGGCCATAAAAAT
515 CTTGCCATGAAACTTCACGT-TAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
3568705 GGCATTGGCATGCAGAAATACGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
579 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
3568770 TGCGCA-TCCTATTTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCTCCTGCTCGTTTCATCGG
644 TGCGCATTCC-GTCTCTCTGGCCGACGTAGTGCCCG----CCCG--C-CC-GTTCGTTTCGTCGG
* * * *
3568834 TTGGCTTAGGCATACGGAGTTCATTCCCTATCTAAAATTGGACCGGA-CAGAGGGTTGTGGTAGC
700 TTGGCTTAGGCATACGGAGTTCATTCCC-ATCTAAGATTGGA-CGGATC-GAGGGTTGCGATAGT
* * *
3568898 AGGATCGGTAGCACGCAGAGGGAGACCCG-ATCGATCACCGACTTGCTCATCCCGCCCTTCTGGC
762 AGGATCGGCAGCACGCAGAGGGGGACCCGAAT-GATC-CCG-CTTGCTCATCCCGCCCCTCTGGC
* * * *
3568962 CGACTGAGCACCCGCATGCTCGTTTCATG-GTTGAC
824 CGACTGAGCGCCCGCACGCTCGTTTCATGTCTTGAG
*
3568997 TTAGGCATAGGGAGTTCATTCCCAGTCTAAG
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAG
3569028 CATACAGAGT
Statistics
Matches: 1529, Mismatches: 170, Indels: 180
0.81 0.09 0.10
Matches are distributed among these distances:
840 27 0.02
841 2 0.00
843 2 0.00
846 1 0.00
851 3 0.00
854 2 0.00
857 1 0.00
858 4 0.00
859 174 0.11
860 33 0.02
861 11 0.01
862 2 0.00
863 4 0.00
865 2 0.00
866 5 0.00
867 127 0.08
868 145 0.09
869 2 0.00
872 2 0.00
873 3 0.00
874 1 0.00
875 11 0.01
876 48 0.03
877 81 0.05
878 266 0.17
879 42 0.03
880 6 0.00
882 159 0.10
883 2 0.00
887 1 0.00
888 1 0.00
891 2 0.00
892 1 0.00
894 3 0.00
896 198 0.13
897 11 0.01
899 2 0.00
900 2 0.00
901 2 0.00
903 5 0.00
904 132 0.09
905 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (859 bp):
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGTTATGACAGCACATGCT
GGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGACACCATCGTCGGAGCATCGCCGG
AGAACCTGACCGACGGCATTGGGGTTTCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGAGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTT
TGTGCAGCCAAAAAAATACAGGATCATGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAAATCTCGAACCGCAAAAGTTTCAAAAATCATGAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTTAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
TCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCATCTAAGATTGGACGGATCGAGGGTTGCGATAGTAGGATCGGCAGCACGCAGA
GGGGGACCCGAATGATCCCGCTTGCTCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCG
TTTCATGTCTTGAG
Found at i:3568171 original size:26 final size:26
Alignment explanation
Indices: 3568135--3568187 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3568125 GTTGACTTAC
*
3568135 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
3568161 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3568187 G
1 G
3568188 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:3569089 original size:178 final size:179
Alignment explanation
Indices: 3568864--3569204 Score: 492
Period size: 178 Copynumber: 1.9 Consensus size: 179
3568854 TCATTCCCTA
** *
3568864 TCTAAAATTGGACCGGACAGAGGGTTGTGGTAGCAGGATCGGTAGCACGCAGAG-GGAGACCCGA
1 TCTAAAATTGGACCGGACAGAGAATTGCGGTAGCAGGATCGGTAGCACGCAGAGAGG-GACCCGA
* *
3568928 TCGATCACCGACTTGCTCATCCCGCC-CTTCTGGCCGACTGAGCACCCGCATGCTCGTTTCAT-G
65 TCGATCACCGACTTGCTCATCCCGCCGC-TCTGGCCGACTGAGCACCCGCACGCTCATTTCATGG
*
3568991 GTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAAGCATACAGAGTTTAG
129 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTTAG
*
3569042 TCTAAGATTGGACCGGACCA-AGAATTGCGGTAGCAGGATCGGTAGCACGCAGAGAGGGACCCGA
1 TCTAAAATTGGACCGGA-CAGAGAATTGCGGTAGCAGGATCGGTAGCACGCAGAGAGGGACCCGA
* * * * * * * *
3569106 TCGATCCCCGGCTTGGTCATCCCGCCGCTCTGGCTGGCTGAGCGCCTGCACGCTCATTTCGTGGG
65 TCGATCACCGACTTGCTCATCCCGCCGCTCTGGCCGACTGAGCACCCGCACGCTCATTTCATGGG
3569171 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
130 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
3569205 CGATCGAACC
Statistics
Matches: 144, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
178 104 0.72
179 40 0.28
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (179 bp):
TCTAAAATTGGACCGGACAGAGAATTGCGGTAGCAGGATCGGTAGCACGCAGAGAGGGACCCGAT
CGATCACCGACTTGCTCATCCCGCCGCTCTGGCCGACTGAGCACCCGCACGCTCATTTCATGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTTAG
Found at i:3570076 original size:26 final size:26
Alignment explanation
Indices: 3570042--3570092 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
3570032 GTTGACTTAG
*
3570042 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
*
3570068 GCATGCGGACTTCATTCCCAGTCTA
1 GCATACGGACTTCATTCCCAGTCTA
3570093 GGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:3570958 original size:26 final size:26
Alignment explanation
Indices: 3570922--3570972 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
3570912 TTGACTTAGG
*
3570922 ATACAGAGTTCATTCCTAGTATAAGC
1 ATACAGAGTTCATTCCCAGTATAAGC
*
3570948 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTATAAG
3570973 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTATAAGC
Found at i:3571430 original size:889 final size:886
Alignment explanation
Indices: 3569180--3571709 Score: 3386
Period size: 887 Copynumber: 2.8 Consensus size: 886
3569170 GTTGACTTAG
* * * * * *
3569180 GCATACGGAGTTCATTCCCAGTCTACGATCGAACCAGACCAAGGATTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
3569245 CTCAGGCATGTGCTAGTG-CGACATTTTTCTTCGTCGGGGCACTATCACCGGAGCATCGTCGAAG
66 CTCAGGCATGTGCTGGTGCCG-CATTTTTCTTCGTC-GGGCACCATCACTGGAGCATC-TCG-AG
* * *
3569309 AACCTGACCGACGGTATTGGGGTTCCG-G--C----GA-TC-AGGGGGTGTGCGCACACGATGTG
127 AACCTGACCGGCGGCATT-GGGTTCCGCGATCGGGGGAGTCGAGGGGGTGTGCGCACATGATGTG
* *
3569365 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCAC
191 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
3569430 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAA-CTGTCTGAAA
256 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGC-GTCTGAAA
* *
3569493 TGGGGATACTTTTTGCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
320 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
* ** *
3569558 GTGCACGCCAACAAAAATACAAGGATCATGTCTAAGAAGTTTGGGGCCAAAACTCCTTCAAAAAA
385 GTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAA
* *
3569623 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACAAGTCGTCT
450 AATTTTAAAAAAT-CCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACAAGTCGTCT
* *
3569688 TGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATC-AACTTACAAGCCATAAAAATGG
514 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA-CGAATTTACAAGCCATAAAAATGG
** **
3569752 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACTGCCCTATCGATCCACGGCTTG
578 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
3569817 CACATCCCGTCTCTCTGGTCGACGTAGTGCCCGTCGCCCGCCTGCTTGTTTAATCGGTTGGCTTA
643 CGCATCCCGTCTCTCTGGTCGGCGTGGTG-CC--CGCCCG-CT-C--GTTTCATCGGTTGGCTTA
** ** * * * *
3569882 GGCATACGGAGTTCATTTTCAGTCTAAGATTGGATCAGACCAAGGGTTGCAGCTGCAAGATCGGT
701 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGATGCAAGATCGGC
* ** * * * *
3569947 AGCACGCAGAGGGTGACCTGGTCGATCCTCGGCTTACGCATCCCGCCCTTTTGGCCGGCTGAGCG
766 AGCACGCAGAGGGGGACCCAGTCCATCCCCGGCTTACGCATCCCGCCCTTCTGGCCGACTGAGCG
* * *
3570012 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
831 CCCGCACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTATAA
* * *
3570068 GCATGCGGACTTCATTCCCAGTCTAGGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
3570133 CTCTGGCATGTGCCGGTGCCATATTTTTCTTCGTCGGCGCA-CA--A-T----CGTC-GGAGAAC
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG-GCACCATCACTGGAGCATCTCGAGAAC
* * * * * *
3570189 CTGACCGGCGGCATTGGGTTCTGGCTATCGGGGGGGCCGAGGGGGTGTGCGCATATGATGTGCAA
130 CTGACCGGCGGCATTGGGTTC-CGCGATCGGGGGAGTCGAGGGGGTGTGCGCACATGATGTGCGA
3570254 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
194 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
3570319 CCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
259 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAATGGG
* *
3570384 GACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTTGAGTTTTTAGCCGAATTTTTTTGTGC
324 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * * *
3570449 ATGCCAACAAGAATACGAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAGAATT
389 ACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAATT
* *
3570514 TTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
454 TTAAAAAATCC-GAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCC
*
3570579 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACCAGCCATAAAAATGGCATTG
518 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTG
* * * * * *
3570644 GCATGCAGAAACATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATTCACAGCTTACGTAT
583 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
*
3570709 ACCGTCTCTCTGGTCGGCGTGGTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
648 CCCGTCTCTCTGGTCGGCGTGGTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
* * * * * *
3570774 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCA-ATAGCAGGATTGGCAGTATGTAGAG
713 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGAT-GCAAGATCGGCAGCACGCAGAG
3570838 GGGGACCCAGTCCATCCCCGGCTTACGCATCCCGGCCC-TCTGGCCGACTGAGCGCCCGCACACT
777 GGGGACCCAGTCCATCCCCGGCTTACGCATCCC-GCCCTTCTGGCCGACTGAGCGCCCGCACACT
* ** *
3570902 -GTTTTGTGGGTTGACTTAGG-ATACAGAGTTCATTCCTAGTATAA
841 CATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTATAA
* * * * *
3570946 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGCTGTGGCAGAACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
3571011 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCACTGGAGCATCATCGATGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG-GGCACCATCACTGGAGCATC-TCGA-GA
* *
3571076 ACCTGACCGGCGGCATTAGAGTTCCGACGATCGGGGGAGTCGAGGGGGTGTGCGTACATGATGTG
128 ACCTGACCGGCGGCATT-GGGTTCCG-CGATCGGGGGAGTCGAGGGGGTGTGCGCACATGATGTG
* *
3571141 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCCTCAAACCTCGAGCACTCAC
191 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
3571206 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCA-TAGCCATTAAAGCGTCTAAAAT
256 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAAT
* * *
3571270 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTGGCTGAATTTTTTTG
321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
3571335 TACACGCCAATAAAAATACAAGGATCACGTCTACCAGGTTCGGGGCCAAAACTCCATCCGAAAAA
386 TGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAA
* * *
3571400 ATTTTAAAAAATCACGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTTGTCTT
451 ATTTTAAAAAATC-CGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACAAGTCGTCTT
* *
3571465 GCCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
515 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCA
*
3571530 TTGGCATGCAGCAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
580 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
3571595 CATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCTGTCCGCCCGCCCGTTCGTTTCGTCGGTTGGC
645 CATCCCGTCTCTCTGGTCGGC---GT----G---GT--GCCCGCCCGCTCGTTTCATCGGTTGGC
*
3571660 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
698 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
3571710 CACGGCAGTA
Statistics
Matches: 1437, Mismatches: 160, Indels: 77
0.86 0.10 0.05
Matches are distributed among these distances:
876 6 0.00
877 19 0.01
878 114 0.08
879 21 0.01
880 132 0.09
881 5 0.00
882 2 0.00
883 2 0.00
884 7 0.00
885 2 0.00
886 92 0.06
887 374 0.26
888 90 0.06
889 352 0.24
890 141 0.10
892 2 0.00
896 1 0.00
899 2 0.00
901 73 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (886 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCACCATCACTGGAGCATCTCGAGAACC
TGACCGGCGGCATTGGGTTCCGCGATCGGGGGAGTCGAGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAC
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAATTTT
AAAAAATCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCA
TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGTCGGCGTGGTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGATGCAAGATCGGCAGCACGCAGAGGGGG
ACCCAGTCCATCCCCGGCTTACGCATCCCGCCCTTCTGGCCGACTGAGCGCCCGCACACTCATTT
CATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTATAA
Found at i:3572188 original size:505 final size:505
Alignment explanation
Indices: 3571238--3572240 Score: 1690
Period size: 505 Copynumber: 2.0 Consensus size: 505
3571228 ATTTTACAGG
3571238 TTTGCTACCATAGCCATTAAAGCGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
1 TTTGCTACCATAGCCATTAAAGCGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
*
3571303 GTACACTTCGAGCTTTTGGCTGAATTTTTTTGTACACGCCAATAAAAATACAAGGATCACGTCTA
66 ATACACTTCGAGCTTTTGGCTGAATTTTTTTGTACACGCCAATAAAAATACAAGGATCACGTCTA
* **
3571368 CCAGGTTCGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCACGAACCATAAAAAGTTTTG
131 CCAGGTTCGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCACAAACCATAAAAAGTTTCA
* * *
3571433 AAAATCATGAAAAATAGAAAACAAGTTGTCTTGCCATGAAACTTCACGTGAATGCTTAAGGGACC
196 AAAATCATGAAAAATAGAAAACAAGTCGGCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
** **
3571498 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGCAATATGAAGATGTGCCTAAAC
261 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAAC
3571563 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCC
326 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCC
*
3571628 TGTCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
391 TGTCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCAAACAGAGTTCATTCCCAGTCTAAGAT
*
3571693 CAGACC-AGACCGAGGGTCACGGCAG-TAGTATCGGCAGCACGCAGAGCCAT
456 CAGACCGA-ACCGAGGGTCACGGCAGCAAG-ATCGGCAGCACGCAGAGCCAT
3571743 TTTGCTACCATAGCCATTAAAGCGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
1 TTTGCTACCATAGCCATTAAAGCGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
3571808 ATACACTTCGAGCTTTTGGCTGAATTTTTTTGTACACGCCAATAAAAATACAAGGATCACGTCTA
66 ATACACTTCGAGCTTTTGGCTGAATTTTTTTGTACACGCCAATAAAAATACAAGGATCACGTCTA
* * * *
3571873 CGAGGTTCGGGGCCAAAACTCCATCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCA
131 CCAGGTTCGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCACAAACCATAAAAAGTTTCA
* *
3571938 AAAATCGTGAAAAATAGAAAACGAGTCGGCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
196 AAAATCATGAAAAATAGAAAACAAGTCGGCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
3572003 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAAC
261 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAAC
* *
3572068 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCG-C
326 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCC
* *
3572132 TCG-CCTGCTCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCTAAG
391 T-GTCC-GCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCAAACAGAGTTCATTCCCAGTCTAAG
** ** *
3572196 ATTGGACCGAACCGAGGGTTGCGGCAGCAAGATCGGTAGCACGCA
454 ATCAGACCGAACCGAGGGTCACGGCAGCAAGATCGGCAGCACGCA
3572241 TAGGGGGACC
Statistics
Matches: 466, Mismatches: 28, Indels: 8
0.93 0.06 0.02
Matches are distributed among these distances:
504 4 0.01
505 459 0.98
506 3 0.01
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (505 bp):
TTTGCTACCATAGCCATTAAAGCGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
ATACACTTCGAGCTTTTGGCTGAATTTTTTTGTACACGCCAATAAAAATACAAGGATCACGTCTA
CCAGGTTCGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCACAAACCATAAAAAGTTTCA
AAAATCATGAAAAATAGAAAACAAGTCGGCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCC
TGTCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCAAACAGAGTTCATTCCCAGTCTAAGAT
CAGACCGAACCGAGGGTCACGGCAGCAAGATCGGCAGCACGCAGAGCCAT
Found at i:3572357 original size:26 final size:26
Alignment explanation
Indices: 3572327--3572379 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3572317 GTTGACTTAG
*
3572327 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
3572353 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
3572379 G
1 G
3572380 ATCAGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:3573268 original size:26 final size:26
Alignment explanation
Indices: 3573231--3573283 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
3573221 GTTGACTTAG
3573231 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3573257 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
3573283 G
1 G
3573284 ATCAGACAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:3573632 original size:26 final size:26
Alignment explanation
Indices: 3573602--3573654 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3573592 GTTGACTTAG
3573602 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3573628 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3573654 G
1 G
3573655 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3575074 original size:902 final size:899
Alignment explanation
Indices: 3573305--3585015 Score: 14035
Period size: 903 Copynumber: 13.2 Consensus size: 899
3573295 CCGAGGGTTG
* *
3573305 TGGCATTGGCACACAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGC
1 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
** *
3573370 TTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCTCGCCCGCCCGCCCGCTCATTTCGTCGG
66 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGG
* ** *
3573435 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCA
131 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCA
* * * * * *
3573500 AGATCAGCAGCATGCATAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCG
196 GGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCG-CTTGTGCATCCCGCCCCTCTGGCCG
*
3573565 ACTGAGCGCCC-CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
260 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * *
3573629 CATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTATGGCAGCACATGCTGGGC
325 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTCGCAGCACATGCTGGGC
** * * **
3573694 TTGGGCATGTGCTGCTGCCGCATTTTTCTTCGTCGAAGCACCAT--T---G---C-CGGAGAACC
390 TCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGAGCATCTCGGAGAACC
* *
3573750 TGACCGGCGGCATTGGGGTTACGGCGATCGGGGGGGCC-----GTGTGCGCACATGATGTGCGCA
455 TGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCG-A
3573810 -GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
518 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
3573874 CCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGG
583 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
3573939 GACAC-TTTTTGAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTCC
648 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
*
3574003 ATGCCAACAAAAATACAAGGATCACGTCTACGAAGTTTGGGGCCAAAAAT-CCTTCCGAAAAAAT
713 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAATCCCTTCCGAAAAAAT
* *
3574067 TTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
777 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
3574132 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
842 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * * *
3574190 TGGCATTGGCACGCAGAAATGTGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACAGC
1 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * * *
3574255 TTGCGCATCTCGTCTCTCGGGTCGACGTAGTGCTCGCCCG-CCGTCCGTCAGCTCGTTTCGTCGG
66 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGG
* * * ** * * *
3574319 TTGGCTTATGCATACAGAGTTCATTCCCATTCTAAGATTGGACCAAACTGAGGGTTGCGATAGCA
131 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCA
* * * *
3574384 GGATTGGCGGCACGCAGAGGGGGACCCGATCGATCCCTGGATTGTGCATCCCGCCCCTC-GGCCG
196 GGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCC-CGCTTGTGCATCCCGCCCCTCTGGCCG
* * * *
3574448 GCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAG
260 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * * * *
3574513 CATACAAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTAGTAGCACATGTTGGGC
325 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTCGCAGCACATGCTGGGC
* * *** *
3574578 TCGGGCATGTGCTGGTACATTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCTCCGGAGAA
390 TCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC-GAGCATCT-CGGAGAA
* * * * * *
3574643 CCTAATCGACGGCATTGGGGTTCTGGTGATCAGGGGGGCCGGGTGGGTGTGCCCACATGATGTAC
453 CCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGG-GGGTGTGCGCACATGATGTGC
* * * * *
3574708 AATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTTGAGAACTCAAA
516 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
3574773 CCCCCTCAAAGAGCATTTGAGATTTCACAGGTTTGCTGCCTA-TAGCCATTAAAGTGTCTGAAAT
581 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC-AGTAGCCATTAAAGTGTCTGAAAT
* *
3574837 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAGTTTTTTTG
645 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
3574902 TGCATGCCAACAAAAATATAGGGATCACGTCTACCAAGTTTGGGGCCAAAATCCCTTCCGAAAAA
710 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCCTTCCGAAAAA
* *
3574967 ATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
775 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
3575032 GCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAA
840 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* **
3575092 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACAAC
1 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
3575157 TTGCGCATCCCATCTCTTTGGCCGGCGCA-T-------TGCCCGCCCGCCCGCTCATTTTGTCGG
66 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGG
* * * **
3575214 TTGGCTTAGGTATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCA
131 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCA
* * * ** *
3575279 GGATCGGTAGCACGTAGAGGGGGACTCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCG
196 GGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCG-CTTGTGCATCCCGCCCCTCTGGCCG
* ** * * * *
3575344 ACTAAATG-CCGCACGCTCATTTCGTGAGTTGACTTAGGCTTACGAAGTTCATTCCCAG----A-
260 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
3575403 C-TA---AG---------A-TC--AGATCGGACC-GA---A-GGTTG-CGGCAGCAAATCCTGCG
325 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTC-GCAGCACATGCTGGG
* * * * *
3575446 CTCAGGCATGTGTTGGTGCCGTATTTTTGTTCGCCGGGGCACTATCGCCAGAGC--CGTCGGAGA
389 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC-GAGCATC-TCGGAGA
* * * * *
3575509 ACCTGACCGGCGACATTGGGGTTCTGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCT
452 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
3575574 ATGGGTGCTGGTCCTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACAC
517 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
3575639 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCTATTAAAGTGTCTGAAATAG
582 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
3575704 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
647 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
** ** * * * *
3575769 CATGTGAACAAAAATACAAGGATTGCGTCAACCAAGTTT-GTGCCAAAA-CTCCTTTCGAAAAAC
712 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATC-CCTTCCGAAAAAA
* * * *
3575832 TTTTAAAAAATCCCAAACTGCAAAAATTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
776 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
3575897 CCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
841 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
3575956 TGGCATTGGCACGTA-AAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACTGC
1 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
3576020 TTGCGCATCCCGCCTCTCTGGCCCG-CGTACTGCCCGCCAGCCCGTCCGCCCGCTCATTTTGTTG
66 TTGCGCATCCCGTCTCTCTGG-CCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCG
*
3576084 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGACCGAGGGTTGCGATAG
130 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGACAG
* * * * ** *
3576148 CAGGATCGGCAACACGCAGAGGGGCACCCG-TACGGT---C-ATT-T-CAT---G--GGT-T-GA
194 CAGGATCGGCAGCACGCAGAGGGGGACCCGAT-CGATCCCCGCTTGTGCATCCCGCCCCTCTGGC
*** ** * *** * * * *
3576199 C--CT-AG-GCATTCACAATTC-ATTC-CCAG-T--C-TAAGCATACGGGGTTCAGTCCCAATCT
258 CGACTGAGCGCCCGCAC-GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * *
3576254 AAG-AT-C---G--CA---CC-G-----GAT-----C-GA-C--GGGTT-ACGATAGCGCATGCT
322 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTCG-CAGCACATGCT
* * * *
3576293 GGGCTC-GTGCATGTGTTGGTGCCGCA-TTTT-TTCGCCGGGGCACTATCGCCAGAGCATCGCCG
386 GGGCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC-GAGCATC-TCG
* * * *
3576355 GAGAACCTGACC-AGCGGCATTGGTGTTCCGACAATCGGGGGGCCTGGGGGGTGTGCGCACATAA
448 GAGAACCTGACCGA-CGGCATTGGGGTTCCGGCGATCGGGGGGCC-GGGGGGTGTGCGCACATGA
* *
3576419 TGTG-GAATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
511 TGTGCG-ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
3576483 CTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
575 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *** * * * *
3576548 GAAATGCGCTTAATTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGCATGT
640 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
3576613 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT-GCTTTC
705 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAATCCCTTCC
* * * * *
3576677 GAAAAAATTTTAAAAAATCTCG-ACCGTAAAAAGTTTCCAAAATTGTGAAAAATAGAAAACGATT
769 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
*
3576741 CTTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
834 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
3576806 A
899 A
** * *
3576807 TGGCATTGGCATGTAGAAATATGAAGATCTGCCTAAACCCACC-ATCCACCCTATTGATCCACGG
1 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTA-CCACCCTATCGATCCACGG
* * * * * *
3576871 CTTGTGCATCCCGTCTCTTTGGCAGACATAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCG
65 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCG
* ** * * * * *
3576936 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGTGGCAGC
130 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGC
* * * * * * *
3577001 AAGATAGGCAGCATGCAGAGGGGGACAC-AGCCGATCCCCGCCT-TGCATTTCCTGCCCCTCTGG
195 AGGATCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGCTTGTGCA--TCCCGCCCCTCTGG
* * * * *
3577064 CTGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGAAGTTCATTCCTAGTCG
257 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
*
3577129 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT-ACGGCAGCACATGCT
322 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTC-GCAGCACATGCT
*** * * *
3577193 GGGCTCAGGCATGTGCTGGTGTTTCATTTTTCTTCGTCTGGGCA-C--CGT--TGCA----GGAG
386 GGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGAGCATCTCGGAG
* * * * * * **
3577249 AACCTGACTGGCAGCAATCGGGTTGCGATGATCGGGGGGGCCGCGGGGGTGTGCGCACATG-TGT
451 AACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGT
* *
3577313 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTTTCCCTCATCAAACCTCGAGGAACTC
514 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTC
* * * * * *
3577378 GCACGCCCTCAAAGAGCATTTTGAGATTTTACAGGTTTGCTGGCA-TAGCCATTAAAATGTCCTA
578 ACACCCCCTTAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-CTG
*
3577442 AAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGGAATTA
641 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-GAATTT
* *
3577506 CTTTGTGGCATGCCAAC-AAAATACAATGATCACCGTCTACCCAAGTTTGGGGCCAAAA-CTCCT
705 TTTTGT-GCATGCCAACAAAAATACAAGGATCA-CGTCTA-CCAAGTTTGGGGCCAAAATC-CCT
* * *
3577569 TCCG-AAAAATTTTAAAAAATCTCGAACGGAAAAAAGTTTCAAAAATCGTGAAAAATAG--AACG
766 TCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
*
3577631 AGTCGTCTTGCCATGAAAACTTCACGTGAAGGCTTAAGGGACCACTGTATG-ATGTTACAAGCCA
831 AGTCGTCTTGCCATG-AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT-TTACAAGCCA
3577695 TAAAAA
894 TAAAAA
*** *
3577701 TGGCA-TGGCATGCAG-AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGAC
1 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
3577764 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C-CCCGCTCACTCGTTTCGTTC-
66 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCG-TCG
* ** * ** * *
3577825 GTTGGCTTCGAAATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAATGTTAC-AGTAG
130 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGA-CAG
* * *
3577889 CAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTT-TCGCATCCCGCCCCTTTGG
194 CAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCC-GCTTGT-GCATCCCGCCCCTCTGG
* * ** * *
3577953 CCGA-TAGAGCGCCCGCACGATCGTTCCGTGCATTAACTTAGGCATACGGAGTTCATTCCCAGTA
257 CCGACT-GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * *
3578017 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCACACCGAGTGTTG-CGGCAGCACATGC
321 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTC-GCAGCACATGC
* * * ** *
3578081 TGGGCTCAGCCATGTGCTAGTGCCGCATTTTTCTTCGCTGGGGCACCATCGTCAGAGTTTCACCG
385 TGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC-GAGCATC-TCG
** * *
3578146 GAGAACCTGACCGACGGCATTGGGGTTTAGGTGATCGGGGGGGCCGAGGGGTGTGCGCACATGAT
448 GAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGAT
* *
3578211 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCAAGAACT
512 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
3578276 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CAGTTAAAGTGTCTG
577 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TTAAAGTGTCTG
* * *
3578340 AAATGGGGATACTGTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTT
641 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
3578405 TTTGTGCATGCCACCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCAA
706 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCCTTCCGA
* * * * *
3578470 AAAAATTTTAGAAAATCCCAAACCGTAAAAAGTTTCAAAATTCATGAAAAATAGAAAACGAGTCG
771 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * * * *
3578535 TCTTGCCTTGAAACATCACGTGAAGGCTTAAGGGCCCATTGTATG-ATTTACATGCAAATAAAAA
836 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC-CATAAAAA
* * *
3578599 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGAC
1 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * * * * * ***
3578664 TTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCTGCCTGTCAGACCACCCGCTCGTTTCATTAA
66 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGG
*
3578729 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCA
131 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCA
*
3578794 GGATCGGCAGCAC-CAGAGGGGGACCC-AGTCGATCCCCAGCTTGTGCATCCCGCCCCTCTGGCT
196 GGATCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCC-GCTTGTGCATCCCGCCCCTCTGGCC
* * * *
3578857 GGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAA
259 GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
3578922 GCCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACGGAAAGGGTTG-CG--G--CATG-T
324 G-CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG--AGGGTTGTCGCAGCACATGCT
** * * *
3578981 --G-T-TTG---GTGCTGG-G-C-AATTTTTCGT--AC-GGGCACCA---TC--G----TCGGAG
386 GGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGAGCATCTCGGAG
* * *
3579024 ---C--ATCG-C--C-----GG-T-----GATCGGGGCGCCGGGGGGTATGCGCACATGATGTGC
451 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
3579070 GATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
516 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
3579135 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTATCTGAAATG
581 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
3579200 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
646 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
3579265 GCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTCC-AAAGAA
711 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCCTTCCGAAA-AA
* * *
3579329 ATTATCAAAAAA--CTGAAATCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAACGAGTCGT
775 ATT-TTAAAAAATCCCG-AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAG-AAAACGAGTCGT
* * *
3579392 CTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTATGGATTTACAAACCATAAAAA
837 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** *
3579455 TGGCATTGGCATGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGC
1 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
3579520 TTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCACCCGCCCGCTCGTCCGCTCGTCTT-GTCG
66 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCAT-TTCGTCG
* * * * *
3579584 GTTGGCTCAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC-GAACTGAGGGGTGC-AGTA
130 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGA-CA
** * * *
3579647 GCAGGATCAACAGCACGCAGAGGGGGATCC-AGCCGATCCCCGCCT-TGCATTTCCCGCCCCTCT
193 GCAGGATCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGCTTGTGCA--TCCCGCCCCTCT
* * * * *
3579710 AGCCAACTGAGTGCCCGCAAGCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGT
255 GGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * *
3579775 CGAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGGTG-CGACAGCACATG
320 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTCG-CAGCACATG
* * * * *
3579839 CTGGGCTCAGGCATGTGCTGGTGTCTCATTTTTCTTCGGCTGGGCAACAT--T---GCA----GG
384 CTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGAGCATCTCGG
* * * * * ** *
3579895 AGAACCTAACTGGCAGCAATGGGGTTCCGTTGATCGGGGGGGCCGGGGGGGTGTGCGCACACGAT
449 AGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCC-GGGGGGTGTGCGCACATGAT
*
3579960 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCATACCTCGAGAACT
512 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
3580025 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAA
577 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
**
3580090 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTACT
642 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
3580155 TTGTGCATGCCAAAAAAAATACAATGATCACGTCTACCAAGTTTGGGGCCAAAA-CTCCTTCCGA
707 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATC-CCTTCCGA
* * *
3580219 AAAAATTTTAAAAAATCTCGAACGGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
771 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
3580284 TCTTGCCATGAAACTTCTCGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
836 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
3580348 TGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATAGATCCACGGC
1 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* ** * * *
3580413 TTGCGCATCCCGTCTATCTGGCCGACGTAGT----GCCCGCCCGCCCGTTCACTTATTTCGTTGG
66 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGG
* ** * * *
3580474 TTGGCTTTGAAATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGC-AGCAGC
131 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGA-CAGC
* * * **
3580538 AGGATCGACAGCACGCAGAGGGGGACCCGAACGATCCCCAGCATCCGCATCCCGCCCCTCTGGCC
195 AGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCC-GCTTGTGCATCCCGCCCCTCTGGCC
*
3580603 TG--TGAGCGCCCGCACACTCGTTTCGTGCAGTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
259 -GACTGAGCGCCCGCACGCTCGTTTCGTG--G-G---T-----T---GA---C-TT---AG----
*
3580666 AGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
298 -GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * * * *
3580731 CCGAGGGTTG-CGACAGCACATGCTGGGCTCAGCCATGTGCTAGTGTCGTATTTTTCTTCACCGG
362 CCGAGGGTTGTCG-CAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGG
* *
3580795 GGCACCATCGTCGGAGCATCACCGGAGAACCTAACCGACGGCATTGGGGTTCCGGCGATCGGGGG
426 GGCACCATCGTC-GAGCATC-TCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGG
* *
3580860 GGCCGGGGGGGTGTGCGGACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCT
488 GGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
3580925 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGC
552 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
3580990 TGCCAGTAGCAATTAAACTGTCTGAAATGGGGACACTGTTTTCAAATGGTCACAAAATCTTGTAC
617 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
*
3581055 ACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
682 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * * * *
3581120 GTCTGGGGCCAAAATTCCTTCCAAAAAAATTTTAGAAAATCCCAAACCGCAAAAAGTTTCAAAAT
747 GTTTGGGGCCAAAATCCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
* * * * *
3581185 TCATGAAAAATAAAAAACGAGTCGTCTTACCATGAAACATCACGTGAAGGCTTAAGGGCCCATTG
812 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
3581250 TATGAATTTACATGCCATAAAAA
877 TATGAATTTACAAGCCATAAAAA
* *
3581273 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGC
1 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * * *
3581338 TTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCTCGCCCGTCTGCCCGCCCGGTCGTTTCATCGA
66 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGG
*
3581403 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCA
131 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCA
* * *
3581468 GGATCGGCAGAAC-CAGAGGGGGACCCGACCGATCCCCGACTTGTGCATCCCGCCCCTCTGACCG
196 GGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCG-CTTGTGCATCCCGCCCCTCTGGCCG
* * * * * *
3581532 ACTGAGTGCCCGTACGCTCGTTTCGTTGGTTGACTTACGCATATGGAGTTCATTCCCAATCTAAG
260 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
3581597 CATACGGAGTTCATTCCTAGTCTAAGATCGGATC-G---GA-------CG--G-A-A-GGT-TG-
325 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTCGCAGCACATGCTGGGC
* * *
3581644 -C-GGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCA---TC--G----TCGGAG---C
390 TCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGAGCATCTCGGAGAACC
*
3581695 --ATCG-C--C-----GG-T-----GATCGGGGGG-C-GGGGGT-TAGCGCACATGATGTGCGAT
455 TGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGT-GCGCACATGATGTGCGAT
*
3581741 GGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
519 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
3581806 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGG
584 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
3581871 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATCTTTTTGTGCA
649 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
3581936 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCAAAAAAATTT
714 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCCTTCCGAAAAAATTT
* * * *
3582001 TCAAAAAA-CCCGAACCGTAAAAATTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
779 T-AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * * *
3582065 ATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGGATTTACAAACGATAAAAA
843 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
3582122 TGGCATTGGCACATAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGC
1 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * *
3582187 TTGCGCAGCCCGTCTCTCTGGTCGACGTAGTGCCCACCCGCCCGCCCGTCCGTTCATCTCGTCTG
66 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGG
* * * * * * *
3582252 TTGGCTCAGGCATACTGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGCTTGCAACAGGA
131 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCA
* * * *
3582317 GGATCGGCAGCACGTAGAGGGGTACCCGATCGATCCCCGGCTTGCGCATCCCGCCTCTCTGGCCG
196 GGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCC-GCTTGTGCATCCCGCCCCTCTGGCCG
* * * *
3582382 ATTGAGCGCCCGCACGCTCGTTTCATTGGTTGACTTAGGCATGCGGAGTTCATTCCCAGTCTAAG
260 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
3582447 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTCTTGCAGCACATGCTAGGC
325 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTCGCAGCACATGCTGGGC
* * * * *
3582512 TCGGGCATGTGCTGGTGCCCCATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCGTTGGAGAA
390 TCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC-GAGCATC-TCGGAGAA
* * *
3582577 CCTGACCAACGGCATTGGGGTTCCGGCGATCCGAGGGCCGGGGGGTGTGCGCACATGATGTGCGA
453 CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
3582642 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
518 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
3582707 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
583 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
3582772 GACACTTTTTTCAAATGGTCACAAAATCTGGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGC
648 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * * * * *
3582837 TTGCCAAAAAAAACACAAGGATCATGTCTACCAAGTTTAGGGCTCAAACT-CTTTCCAAAAAAAT
713 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAAAATCCCTTCCGAAAAAAT
* * *
3582901 TTTAAAAAATCCC-AATCACAAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
777 TTTAAAAAATCCCGAACCGC-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
3582965 CCATGAAACTTCACGTGAAGGCTTAAAGGGAGCATTGTATG-ATTTACAAGCCCATAAAAA
841 CCATGAAACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTTACAAG-CCATAAAAA
* *
3583025 TGGCATTGGCATACAGAAATATG-AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
1 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * ** **
3583089 TCGCGCAT-CCGTCTCTCTGGCCGGCGGTAGTGCCCGCCTGCCCGCCCGCACG-TGTTTTCGTTA
66 TTGCGCATCCCGTCTCTCTGGCCGAC-GTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCG
* * * *
3583152 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTAGTGGCAGC
130 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGC
* * * * * *
3583217 AGGATTGGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCTCGCCCTTCTGGCC
195 AGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCC-GCTTGTGCATCCCGCCCCTCTGGCC
** * * * *
3583282 GGTTGAGCACCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
259 GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * *
3583347 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGAGTT-CCAGTAGAACATGCTGG
324 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTC-GCAGCACATGCTGG
** * * * *
3583411 GCTTGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCACCGCCGGAGCATCGCCGGAG
388 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC-GAGCATC-TCGGAG
*
3583476 AACCTGACCGACGGCATTAGGGTTCCGGCGATCGAGGGGGCCGAGGGGGTGTGCGCACATGATGT
451 AACCTGACCGACGGCATTGGGGTTCCGGCGATCG-GGGGGCCG-GGGGGTGTGCGCACATGATGT
*
3583541 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
514 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
3583606 CACCCCCTTAAAGAGCATTTGGGATTTTACA-GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
579 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
3583670 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTT
644 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
3583735 GTGCATGCCAACAAAAATACAAGGACCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCAAAAA
709 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCCTTCCGAAAA
** *
3583800 AATTTTCAAAAAA-CCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTC
774 AATTTT-AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
3583864 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGGATTTACAAACCATAAAAA
838 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
3583926 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGC
1 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * ** * *
3583991 TTGCGCATCCCATCTCTCTGGTCGACGTAGTGCCCACCCGCCCGCCCATCCGCTCATCTCATCGG
66 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGG
* * * * * *
3584056 TTGGCTCAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGCTTGCAATAGGA
131 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCA
* * * ** * * * *
3584121 GTATCAGCAACACATAGAGGGGGACCTGGTCGATCCCCGGCTTGCGCATCCCGCCTCTCTGGCCG
196 GGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCC-GCTTGTGCATCCCGCCCCTCTGGCCG
* * * * *
3584186 GCTGAGCACCCGCACGCTCGTTTCATGGGCTGACTTAGGCATGCGGAGTTCATTCCCAGTCTAAG
260 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
3584251 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTT-TCGGTAGCACATGCTGGG
325 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTC-GCAGCACATGCTGGG
* * ** * * *
3584315 CTCGGGCATGTGCTGGTGCCCCATTTTTCTTCGTAGGGCCACAATCGCCGGAGCATCGAT-GGAG
389 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC-GAGCATC--TCGGAG
*
3584379 AACCTGACCGATGGCATTGGGGTTCCGGCGATCGAGGGGGCCGAGGGGGTGTGCGCACATGATGT
451 AACCTGACCGACGGCATTGGGGTTCCGGCGATCG-GGGGGCCG-GGGGGTGTGCGCACATGATGT
3584444 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
514 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
3584509 CACCGCCTTAAAGAGCATTTGAGATTTTACA-GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
579 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
3584573 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTT
644 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
3584638 GTGCATGCCAACAAAAATACAAGGACCATGTCTACCAAGTTTAGGGCGAAAA-CTCCTTCCGAAA
709 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATC-CCTTCCGAAA
* * * * *
3584702 GAATTTTAAAAAATCTCGAACGGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTC
773 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
3584767 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGGATTTACAAACCATAAAAA
838 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
3584829 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGC
1 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
3584894 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCGCTTATTTCGTCGG
66 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGG
* * *
3584959 TTGGATTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
131 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
3585016 TGGCAGCACA
Statistics
Matches: 9384, Mismatches: 1070, Indels: 726
0.84 0.10 0.06
Matches are distributed among these distances:
848 26 0.00
849 579 0.06
850 212 0.02
851 356 0.04
852 207 0.02
853 14 0.00
854 25 0.00
855 312 0.03
856 286 0.03
857 110 0.01
858 2 0.00
859 8 0.00
860 1 0.00
861 3 0.00
862 4 0.00
863 69 0.01
864 161 0.02
865 233 0.02
866 17 0.00
867 45 0.00
868 5 0.00
869 67 0.01
870 57 0.01
871 110 0.01
872 8 0.00
873 16 0.00
874 12 0.00
875 28 0.00
876 6 0.00
877 3 0.00
878 2 0.00
879 1 0.00
880 4 0.00
881 6 0.00
882 2 0.00
883 49 0.01
884 267 0.03
885 96 0.01
886 17 0.00
887 4 0.00
888 26 0.00
889 390 0.04
890 19 0.00
891 95 0.01
892 195 0.02
893 263 0.03
894 399 0.04
895 263 0.03
896 38 0.00
897 72 0.01
898 111 0.01
899 123 0.01
900 228 0.02
901 544 0.06
902 1142 0.12
903 1235 0.13
904 2 0.00
905 8 0.00
906 2 0.00
908 1 0.00
909 2 0.00
911 2 0.00
912 1 0.00
914 124 0.01
915 2 0.00
916 1 0.00
918 1 0.00
920 3 0.00
923 1 0.00
925 506 0.05
926 1 0.00
927 3 0.00
928 43 0.00
929 107 0.01
930 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGG
TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCA
GGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGCTTGTGCATCCCGCCCCTCTGGCCGA
CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTCGCAGCACATGCTGGGCT
CAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGAGCATCTCGGAGAACCT
GACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCCTTCCGAAAAAATTTTA
AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
Done.