Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 26 of 129
Found at i:3578023 original size:26 final size:26
Alignment explanation
Indices: 3577994--3578046 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3577984 ATTAACTTAG
*
3577994 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACAGAGTTCATTCCCAGTATAA
*
3578020 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTATAA
3578046 G
1 G
3578047 ATCAGACCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTATAA
Found at i:3578935 original size:27 final size:27
Alignment explanation
Indices: 3578897--3578949 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
3578887 TTGACTTAGG
3578897 CATACGGAGTTCATTTCC-AGTCTAAGC
1 CATACGGAGTTCA-TTCCTAGTCTAAGC
3578924 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCTAGTCTAAG
3578950 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 4 0.16
27 21 0.84
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (27 bp):
CATACGGAGTTCATTCCTAGTCTAAGC
Found at i:3580670 original size:26 final size:26
Alignment explanation
Indices: 3580641--3580719 Score: 158
Period size: 26 Copynumber: 3.0 Consensus size: 26
3580631 AGTGACTTAG
3580641 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3580667 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3580693 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3580719 G
1 G
3580720 ATCAGACCAG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3581606 original size:26 final size:26
Alignment explanation
Indices: 3581570--3581622 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3581560 GTTGACTTAC
*
3581570 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
3581596 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3581622 G
1 G
3581623 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:3583350 original size:26 final size:26
Alignment explanation
Indices: 3583321--3583373 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3583311 GTTGACTTAG
3583321 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
3583347 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3583373 G
1 G
3583374 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3585627 original size:717 final size:712
Alignment explanation
Indices: 3584250--3586432 Score: 3310
Period size: 717 Copynumber: 3.1 Consensus size: 712
3584240 CCCAGTCTAA
* * * *
3584250 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTTCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTT-GGCAGCACATGCTGGG
* * * * *
3584315 CTCGGGCATGTGCTGGTGCCCCATTTTTCTTCGTAGGGCCACAATCGCCGGAGCATCGATGGAGA
65 CTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACAATCGCCGGAGCATAGACGGAGA
* ** *
3584380 ACCTGACCGATGGCATTGGGGTTCCGGCGATCGAGGGGGCCGAGGGGGTGTGCGCACATGATGTG
130 ACCTGATCGGCGGCATTGGGGTT-CAGCGATCG-GGGGGCC-AGGGGGTGTGCGCACATGATGTG
3584445 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
3584510 ACCGCCTTAAAGAGCATTTGAGATTTTACA-GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
3584574 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-
* * * * * *
3584639 TGCATGCCAACAAAAATACAAGGACCATGTCTACCAAGTTTAGGGCGAAAACTCCTTCCGAAAGA
386 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-AAAAATCCTTCCAAAAAA
* *
3584704 ATTTTAAAAAATCTCGAACGGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
450 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
3584769 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGGATTTACAAACCATAAAAATGGCA
515 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
3584834 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCG
580 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCACGGCTTGCG
* *
3584899 CATCCCGTCTCTCTGGCC-GACGTAGTGCCCGCCCGCCTGCCCGCCCGCTTATTTCGTCGGTTGG
644 CATCACGTCTCTCTGGCCAG-CGTAGTGCCTGCCCGCCTGCCCGCCCGCTTATTTCGTCGGTTGG
3584963 ATTAG
708 ATTAG
*
3584968 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT-TGGCAGCACATGCTGGG
* * *
3585033 CTCGAGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATAGCCGGAGA
65 CTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACAATCGCCGGAGCATAGACGGAGA
*
3585098 ACCTGATCGGCGGCATT-GGGTTCTAGCGATCGGAGGGCCAGGGGGTTGTGCGCACATGATGTGC
130 ACCTGATCGGCGGCATTGGGGTTC-AGCGATCGGGGGGCCAGGGGG-TGTGCGCACATGATGTGC
* * *
3585162 GATGGGTGCTGGGACTTGGCCCTTATATTGGCCCCGTATCCCTCATGAAACCTCGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
3585227 CCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* **
3585292 GGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCGGCTGAATTTTTTTAT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-T
3585357 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAAATCCTTCCAAAAAAA
387 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-AAAAATCCTTCCAAAAAAA
* * * * * * *
3585422 TTTTTAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAATCATCTTG
451 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
3585487 CCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCAT
516 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
3585552 TGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATTGATCCACGGCTTGCGC
581 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCACGGCTTGCGC
* * *
3585617 ATCACGTCTCTTTGGCCAGCGTAGTGGCTGCCTGCCTGCCCGCCCGCTTATTTCGTCGGTTGGAT
645 ATCACGTCTCTCTGGCCAGCGTAGTGCCTGCCCGCCTGCCCGCCCGCTTATTTCGTCGGTTGGAT
3585682 TAG
710 TAG
* *
3585685 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT-TGGCAGCACATGCTGGG
** * *
3585750 CTCGGGCATGTGCTGGTGCCGT-ATTTTTCTTCGTCACGGCACTATCGCCGGAGCATCA-TCGGA
65 CTCGGGCATGTGCTGGTGCC-TCATTTTTCTTCGTCGGGGCACAATCGCCGGAGCAT-AGACGGA
* * * * *
3585813 GAACCTGATCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCTGGGGGTGTGCGCACATGATTTG
128 GAACCTGATCGGCGGCATTGGGGTTCAG-CGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTG
*
3585878 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
3585943 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
3586008 GGGGACACTTTTTTCAAATGCTCACAAAATCTTTTACACTTCGAGTTTTTAGCTCAA-TTTTTTT
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
* *
3586072 CCATGCCAA-ACAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTTCAAAAAA
387 GCATGCCAACA-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAA-TCCTTCCAAAAAA
* * *
3586136 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAAAAAACGAGTCGCCTT
450 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
3586201 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGC-
515 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
3586265 TCTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCATGGCTTGC
580 T-TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACC-TATCGATCCACGGCTTGC
* * * *
3586330 GCATCTCGTCTCTCTGGCCAGCGTAGTGCCTACCCGCCT----GCCCGCTTGTTTCATCGGTTGG
643 GCATCACGTCTCTCTGGCCAGCGTAGTGCCTGCCCGCCTGCCCGCCCGCTTATTTCGTCGGTTGG
*
3586391 CTTAG
708 ATTAG
* * *
3586396 GTATACGGAGCTCATTCCCAGTCTAAGATCGGACCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
3586433 GTGGAGGGTT
Statistics
Matches: 1336, Mismatches: 116, Indels: 33
0.90 0.08 0.02
Matches are distributed among these distances:
711 57 0.04
714 9 0.01
715 267 0.20
716 120 0.09
717 729 0.55
718 153 0.11
719 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (712 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTTGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACAATCGCCGGAGCATAGACGGAGAA
CCTGATCGGCGGCATTGGGGTTCAGCGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAATCCTTCCAAAAAAATTTTA
AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTATCGATCCACGGCTTGCGCATCACG
TCTCTCTGGCCAGCGTAGTGCCTGCCCGCCTGCCCGCCCGCTTATTTCGTCGGTTGGATTAG
Found at i:3586582 original size:26 final size:26
Alignment explanation
Indices: 3586546--3586598 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3586536 ATTAACTTTG
*
3586546 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3586572 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3586598 G
1 G
3586599 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3587484 original size:26 final size:26
Alignment explanation
Indices: 3587448--3587500 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3587438 GTTGACTTAG
3587448 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
* *
3587474 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
3587500 G
1 G
3587501 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:3588636 original size:902 final size:901
Alignment explanation
Indices: 3585685--3591844 Score: 8276
Period size: 902 Copynumber: 6.9 Consensus size: 901
3585675 GTTGGATTAG
* *
3585685 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * ** *
3585750 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCACGGCACTATCGCCGGAGCATCATCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGA
* * * * * * *
3585815 ACCTGATCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCTG-GGGGTGTGCGCACATGATTTGC
131 ACCTGATCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGAGGGGTGTGTGCACATGATGTGC
*
3585879 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCAGAACTCACA
3585944 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
3586009 GGGACACTTTTTTCAAATGCTCACAAAATCTTTTACACTTCGAGTTTTTAGCTCAA-TTTTTT-T
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
3586072 CCATGCCAA-ACAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTTCAAAAAA
390 GCATGCCAACA-AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
3586136 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAAAAAACGAGTCGCCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTT
*
3586201 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGC-
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * *
3586265 TCTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCATGGCTTGC
584 T-TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * ** * * *
3586330 GCATCTCGTCTCTCTGGCCAGCGTAGT---GCCTACCCGCCTGCCCGCTTGTTTCATCGGTTGGC
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * ** * *
3586392 TTAGGTATACGGAGCTCATTCCCAGTCTAAGATCGGACC-GGGTGGAGGGTTAC-AGTAGTAGGA
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-GAGGGTTGCGA-TAGCAGGA
* *** * * * * **
3586455 TTGGCGGCACGCAGA-ATGTG-CCTGACCGATCCCCGGCTTCCGCATCCCACCCCTCTGGTTGGC
776 TCGATAGCACGCAGAGA-GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGACGGC
* * * * **
3586518 TGA------G--CGCTCATTTCGTGGATTAACTTTGGCATATAGAGTTCATTCCCAGTCTAA
840 TGAGCGCCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
3586572 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
3586637 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGTACCATCGTCGGAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGA
*
3586702 ACCTAATCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGAGGGGTGTGTGCACATGATGTGC
131 ACCTGATCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGAGGGGTGTGTGCACATGATGTGC
* *
3586767 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCATGAATTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA-GAACTCACA
* * *
3586832 CCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
3586897 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
3586962 GCATGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAACTCCTTTCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * *
3587027 TTTTCAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTG
*
3587092 CCATGTAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
3587157 TGGCATGCAGAAATATGAAGATGTGCTTAAACCCGCCTACCACCCTATCGATCCACGGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
3587222 ATCCTGTCTCTCTGGCCGACGTAGT---GCCCGCCCTCCCGCCCGCTCGTTTCGTCAGTTGGCTT
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * **
3587284 AGGCATGCGGAGTACATTCCCAATCTAAGATCGG-CCTAG-TTAGAGGGTTGTGGCAGCAATAGG
715 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-AGACT-GAGGGTTGCGATAGC---AGG
* * * *
3587347 ATCGAGAGCACACAGAG-GGGCACCTGACCGATCCCCGGCTTGCGCATCTCGCCCCTCT-GACCG
775 ATCGATAGCACGCAGAGAGGG-ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGA-CG
** * *
3587410 GCTGAGCGTTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTACCAGTCTAA
838 GCTGAGCGCCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
3587474 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
3587539 CTCGGGCATGTGCTGGTGCCGCACTTTTCTTCGTAGGGGCACCATCATCGGAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGA
* *
3587604 ACCTGACCGACGGCATTGGGGTTCTGGCGATC-GGGGGGCCGGGGGGTGTGTGCACATGATGTGC
131 ACCTGATCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGAGGGGTGTGTGCACATGATGTGC
* * * *
3587668 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACATCACAAATTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA-GAACTCACA
*
3587733 CCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTA-CCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
3587797 GGGACACTTTTTTCGAATGGTCACAAAATCTTGTAGACTTTGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
3587862 GCATGCCAACAAAAAT-CAAAGGATTATGACTACCAAGTTTGGGGCCAAAACTCCGTCCGAAAAA
390 GCATGCCAACAAAAATAC-AAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** * *
3587926 ATTTTAAAAAATCCCCGAACCGTAAAAAGTTTTGAAAATCATAAAAAATAGAAAATGAGTCGTCT
454 ATTTTAAAAAAT-CCCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCT
*
3587991 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
3588056 ATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
3588121 GCATCCCGCCTCTTTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGCTCGCTCGTTTCATCGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGC-CGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * *
3588186 CTTAGGCATACGGAATTCATTCTCAGTCTAAGATCAGACCAGACTGAGGGTTGCGATAGCAGGAT
712 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGATAGCAGGAT
* *
3588251 CGATAGCATGTAGAGAGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGACGGCTG
777 CGATAGCACGCAGAGAGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGACGGCTG
*
3588316 AGCGCCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
842 AGCGCCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
3588376 GCATAGGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGTAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
3588441 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCG-CTGGGGCACCATCAT-GGAGCATCGTCGGAG
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCATCGGAGCATCGTCGGAG
* * *
3588504 AACCTAACCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGAGGGGTCTGTGCACATGATGTG
130 AACCTGATCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGAGGGGTGTGTGCACATGATGTG
*
3588569 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCATGAATTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA-GAACTCAC
* * *
3588634 ACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
3588699 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
3588763 TGCATGCCAAAAAAAATACAAGGATCATGGCTACCAAGTTTGGGGCAAAAATTCCTTCTGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
3588828 ATTTTAAAAAATCCTGAACCATTAAAAGTTTCAAAAATCGTCAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTT
* *
3588893 GACATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*** * * *
3588958 TTGGCACATAGAAATATGAAGATGTGTCTAAACCCACTTACCACCCTATCGATCCACGGCTTACG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
3589023 GATCTCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCCCACTCGTTTCGTCGATCGAC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCC-GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * ** * *
3589088 TTAGGCATGCGGAGTTCATTCCCAGTCCAAGATTGGACGGGACTGAGGGTTACGATAGCAAGATC
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGATAGCAGGATC
* * ** * * *
3589153 GACAGCACGTAGAGAGGGACCCGGTCAATCCCTGACTTGCGCATCCCGCCCCTCTGG-CTGGCTG
778 GATAGCACGCAGAGAGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGAC-GGCTG
* * *
3589217 AGTGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 AGCGCCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
3589277 GCATACAGTGTTCATTCCCAGTCTAAGATC-GAACTGGATCGAGGGTTGCGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
3589341 GCTCAGGCATGTGCTGGTGCTGCATTTTTCTTC-CCTGAGGCACCATCATCAGAGCATCGCCGGA
65 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCATCGGAGCATCGTCGGA
* * * * * *
3589405 GAACCTGATTGTCGGCATTGGGGTT-TCGGCGATCGGGGGGTCGGGGGGGTGTGCGCACATGATG
129 GAACCTGATCGACGGCATTGGGGTTCT-GGCGATCGGGGGGGCCGAGGGGTGTGTGCACATGATG
*
3589469 CGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACTC
*
3589534 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TTAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
3589598 AGTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTGT
322 A-TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* ** * *
3589663 TTGTGCATGCTAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGAAAAAATTCTTTCCGAA
386 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * *
3589728 AAAAATTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATTGTCAAAAAACAGAAAACGAGTCG
451 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT-AAAAAATAGAAAACGAGTCG
* *
3589793 TCTTGACATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
3589858 GGCATTGGCATGCAGTAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACGGTT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* ** * *
3589923 TGCGCATCTCGTCTCTCTGGCCAACGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCGAT
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * * * *
3589988 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACCACAGTAG
709 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGATAGCAG
* * * * * * * *
3590053 GATCGATAGCACGTAGAGGGGGACCCGATCGATCCCTGGCTTGTGCATCCCGCCCCTTTGGTCGA
774 GATCGATAGCACGCAGAGAGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGACGG
* ** *
3590118 CTGAGCGCCCGCACGCT-TGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCGTAGTCAAA
839 CTGAGCGCCCGCACGCTCT-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
3590181 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACGGGATCGAGGGTTGCGGCAGCACATGCAGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** ** * *
3590246 CTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGCTCATCGCCAGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGA
* * * * * * ** *
3590311 ACCTAACCGGCGGCGTTGGGGTTCCGAG-GATCGGGGGGCCCGAGGGGTGTGCACAAATGATGTG
131 ACCTGATCGACGGCATTGGGGTTCTG-GCGATCGGGGGGGCCGAGGGGTGTGTGCACATGATGTG
* *
3590375 CGATTGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCAC
* *
3590440 ACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTGTTGCCAGTGGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
3590504 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGTGTGTTTAGCTGAATGTTTCTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
3590569 TGCAAGCCAACAAAAATACAAAGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** * ** *
3590634 ATTTCAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATCGTCAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTT
* *
3590699 GCCACGAAACTTCACGTGAAGGCCTAA-GGACCATTGTATGAATTTACAAGCCAT-AAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
3590762 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCA
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
3590827 CATCCCGTCTCTTTGACCGGCGTAGTG-C-CCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCT
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * * * *** *
3590890 TAGGAATACAGAGTTCATTCCTAGTCTAAGATTGGACCAGAGTGAGGGTTGTGGTATTGGGATTG
714 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGATAGCAGGATCG
* * * * * * *
3590955 GTAGCACACAGAGGGGGACCC-AGCCGGTCCCCGGGTTGCACATCCCGCCCCTCTGGCCGGCTGA
779 ATAGCACGCAGAGAGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGACGGCTGA
** ** *
3591019 GCGCCCATACGCT-TGTTTTATGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAA
843 GCGCCCGCACGCTCT-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * **
3591078 GCATACGGAGTTCATTCCCAGTCAAAGATAAGATCAGACCGAGGGTTCCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
3591143 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGA
* * * ** * **
3591208 ACGTGGTCGACGGCATTGGGGTTCCGATGATC-GGGGGGCCGGGGGGTGTGCACACATGATGTGC
131 ACCTGATCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGAGGGGTGTGTGCACATGATGTGC
*
3591272 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCAAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCACA
* *
3591337 CCCCCTTAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
3591402 GGGACACTTTTTTCAAATGGTCACAGAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
** ** *
3591467 GCATGCCAACAAATCTACAAGGATCATGTCTACCAAGTTTGATGCCAAAACTCGTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * ** *
3591532 TTTTAAAAAATCTCAAACCGCAAAACGTTTTGAAAATCGTAAAAAATAGAAAACGAGTTGTCTTG
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTG
* *
3591597 CCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
3591662 TGGCACGCACAAATACGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* ** * * *
3591727 ATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCATGCCCGCCTGCCCGCTCGTTTCATCGGTCGGCT
650 ATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * *
3591792 TAGGCAAACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG
714 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCG
3591845 GCAGCACATG
Statistics
Matches: 4679, Mismatches: 530, Indels: 113
0.88 0.10 0.02
Matches are distributed among these distances:
887 154 0.03
888 193 0.04
889 8 0.00
890 326 0.07
891 3 0.00
892 2 0.00
893 15 0.00
894 39 0.01
896 121 0.03
897 543 0.12
898 28 0.01
899 93 0.02
900 245 0.05
901 887 0.19
902 970 0.21
903 348 0.07
904 620 0.13
905 81 0.02
906 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGA
ACCTGATCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGAGGGGTGTGTGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGATAGCAGGATCGAT
AGCACGCAGAGAGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGACGGCTGAGCG
CCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:3589280 original size:26 final size:26
Alignment explanation
Indices: 3589251--3589303 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3589241 GTTGACTTAG
*
3589251 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
3589277 GCATACAGTGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3589303 G
1 G
3589304 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3592476 original size:721 final size:717
Alignment explanation
Indices: 3591078--3593285 Score: 3322
Period size: 717 Copynumber: 3.1 Consensus size: 717
3591068 CCCAGTCTAA
* * * * **
3591078 GCATACGGAGTTCATTCCCAGTCAAAGATAAGATCAGACCGAGGGTTCCGATAGCACATGCTGGG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
3591143 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
65 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
3591208 ACGTGGTCGACGGCATTGGGGTTC-CGATGATC-GGGGGGCCGGGGGGTGTGCACACATGATGTG
130 ACCTGATCGGCGGCATTGGGGTTCTCGACGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTG
* *
3591271 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
3591336 ACCCCCTTAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
3591401 GGGGACACTTTTTTCAAATGGTCACAGAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
** * * ** * * **
3591466 TGCATGCCAACAAATCTACAAGGATCATGTCTACCAAGTTTGATGCCAAAACTCGTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCAAAAACTCCTTTTGAAAAA
* ** * * *
3591531 ATTTTAAAAAATCTCAAACCGCAAAACGTTTTGAAAATCGTAAAAAATAGAAAACGAGTTGTCTT
455 ATTTTAAAAAATCTCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
3591596 GCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
3591661 TTGGCACGCACAAATACGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
* * * *
3591726 CATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCATGCCCGCCTGCCCGCTCGTTTCATCGGTCGGC
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGC-TGCCCGCCTGCCCGCTCATTTCATCGGTTGGC
3591791 TTAG
714 TTAG
*
3591795 GCAAACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
3591860 CTCAAGCATATGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
65 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
3591925 ACCTGATCGGTGGCATTGGAGTTCTAG-CGATCGGGGGGGTCGGGACGGGTGTGCTCACATGATG
130 ACCTGATCGGCGGCATTGGGGTTCTCGACGATCGGGGGGGCCGGG--GGGTGTGCACACATGATG
3591989 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
3592054 ACACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAA
258 ACACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
3592119 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAACTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
*
3592184 TGCGCATGCCAAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCAAAAACTCCTTTTGAA
388 TGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCAAAAACTCCTTTTGAA
* * *
3592249 AAAATTTTAAAAAATCTCGAACTATAAAAAGTTTTGAAAATCATGAAAAATAGAGAACGAGTCGT
452 AAAATTTTAAAAAATCTCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
*
3592314 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
3592379 GCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
582 GCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
* * * * *
3592444 ACGCATCCCGTCTCTCTGGCCGACGCAGTG-CC-C-GCCCGACTGCTCGCTCATTTCGTCGGTTG
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTGCCCGCCTGCCCGCTCATTTCATCGGTTG
3592506 GCTTAG
712 GCTTAG
* * * *
3592512 GCATACGCTGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACG-AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * * *
3592577 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTTGTAGCACCATCATCGGAGTATCGCCGAAGA
65 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
3592642 ACCT-AACTTGCGGCATTGGGGTT-TCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATAT
130 ACCTGATC-GGCGGCATTGGGGTTCTCGACGATCGGGGGGGCCGGGGGGTGTGCACACATGATGT
* * *
3592705 GCGATGGGTGCTGGTATTTGGCCCATATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
3592770 CACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
3592835 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTTGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
*
3592900 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCAAAAACTCTTTTTGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCAAAAACTCCTTTTGAAAA
**
3592965 AATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCTCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
3593030 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
3593095 ATTGGCAAT-CAGAAATATAAAGATGA-GCCTAAACCCACCTACCACCCTATCAATCCAC-AGCT
584 ATTGGC-ATGCAGAAATATGAAGAT-ATGCCTAAACCCACCTACCACCCTATCGATCCACGA-CT
* *
3593157 TGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCTGCCTGCTCATTTCATCGGT
646 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CTGCCCGCCTGCCCGCTCATTTCATCGGT
3593222 TGGCTTAG
710 TGGCTTAG
* * * *
3593230 GCATACTGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAAGGTTGCGGTAGCA
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
3593286 GGATCACCAG
Statistics
Matches: 1349, Mismatches: 126, Indels: 31
0.90 0.08 0.02
Matches are distributed among these distances:
713 1 0.00
714 260 0.19
715 217 0.16
716 5 0.00
717 315 0.23
718 88 0.07
719 2 0.00
720 213 0.16
721 248 0.18
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (717 bp):
GCATACGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
CCTGATCGGCGGCATTGGGGTTCTCGACGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCAAAAACTCCTTTTGAAAAAA
TTTTAAAAAATCTCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTGCCCGCCTGCCCGCTCATTTCATCGGTTGGCTT
AG
Found at i:3594574 original size:857 final size:856
Alignment explanation
Indices: 3592922--3595040 Score: 2652
Period size: 857 Copynumber: 2.4 Consensus size: 856
3592912 AAAAATACAA
* * *
3592922 GGATCACGTCTACCAAGTTCGGGGCAAAAACTCTTTTTGAAAAAATTTTAAAAAATCTCGAACCA
1 GGATCACATCTACCAAGTTCAGGGCAAAAACTCCTTTTGAAAAAATTTTAAAAAATCTCGAACCA
**
3592987 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
66 TAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
3593052 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAT-CAGAAATATAAA
131 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-ATGCAGAAATATGAA
* * *
3593116 GATGAGCCTAAACCCACCTACCACCCTATCAATCCACAGCTTGTGCATCCCGTCTCTCTGGCCGA
195 GATGAGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
*
3593181 CGTAGTGCCCGCCTGCCCGCCTGCCTGCTCATTTCATCGGTTGGCTTAGGCATACTGAGTTCATT
260 CGTAGT--CCGCCTGCCCGCCTGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACTGAGTTCATT
* * * * * * * **
3593246 CCCAGTCTAAGATCAGACCAAACTGAAGGTTGCGGTAGCAGGATCACCAGCACGTAGAAGGGGAC
323 CCCAGTCTAAGATCGGACCAGACCGAGGGTTACAGCAGCAGGATCACCAGCACACAGAAGGGGAC
** * * * *
3593311 CCGATTGATCCCCGACTTGCGCATCCCACCCCTCTGGCTGGCTGAGCACCCGTACGCTCGTTTCG
388 CCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGACTGAACACCCGCACGCTCGTTTCG
* * * *
3593376 TTGGTTGACTTAGACATACGGAGTTCATTCCCAGTCTAAGCCTATGGAGTTCATTCCCAGTCTAA
453 TGGGTTGACTTAGACATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGCCTAA
** *
3593441 GATCGGACCAGACTGAGGGTCGCGACAGCACATGTTAGGGTCAGGCATGTGCTGGTGCCATATTT
518 GATCGGACCAGACTGAGGGTCGCGACAGCACATGCCAGGCTCAGGCATGTGCTGGTGCCATATTT
* * * * *
3593506 TTCTTCATCGAGGAACCAACGTCGGAGTATCGTCGAAGAACCTGACCGATGGCATTGGGGTTCCG
583 TTCTTCATCGAGGAACCAACGCCAGAGCATCGTCGAAGAACCTGACAGACGGCATTGGGGTTCCG
* * ** *
3593571 GCGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTCTA
648 ACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAACCCTTATA
* * **
3593636 TTGGCCACCTATCCCTCATCAAACCTCGAGAACTCATACCCTGTTAAAGAGAATTTGACATTTTA
713 TTGGCCACCTATCCATCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGACATTTTA
* *
3593701 TAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATTGGGAAACTTTTTTCAAATGGTCACAAA
778 TAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTAAAATGGGGAAACTTTTTTCAAATGGTCACAAA
3593766 ATCTTGTACACTT-
843 ATCTTGTACACTTC
3593779 GGATCACATCTACCAAGTTCAGGGCAAAAACTCCTTTTGAAAAAATTTTAAAAAATCTCGAACCA
1 GGATCACATCTACCAAGTTCAGGGCAAAAACTCCTTTTGAAAAAATTTTAAAAAATCTCGAACCA
*
3593844 TAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAG
66 TAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
**
3593909 GCTTAAGGGACCATTGTATGAATTTACAAGATATAAAAATGGCATTGGCATGCAGAAATATGAAG
131 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
*
3593974 ATGAGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGAC
196 ATGAGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * *
3594039 GTAGTAACCGCCTGCCCGCCTACCTGCTCGTTTCCTCGGTTGGCTTAGGCATACTGAGTTCATCC
261 GTAGT--CCGCCTGCCCGCCTGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACTGAGTTCATTC
* * * ** *
3594104 CCAGTCTAAGATTGGACTAGACCGAGGGTTACAGCAGTAGGATCGGCAGCACACAGAGGGGGACC
324 CCAGTCTAAGATCGGACCAGACCGAGGGTTACAGCAGCAGGATCACCAGCACACAGAAGGGGACC
* * * * * * *
3594169 CTACCGGTCCCCGGCTTGTGCATCCCTCTCCTCTGGCCGACTGAACGCCCGCACGCTCGTTTCGT
389 CGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGACTGAACACCCGCACGCTCGTTTCGT
** * * *
3594234 GGGTTGACTTAGGTATACGAAGTTCATTCCTAGTCTAAGCATATGGAGTTCTTTCCTAGCCTAAG
454 GGGTTGACTTAGACATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGCCTAAG
* * * *
3594299 ATCGGACCAGA-TCGAGGGTTGCGTCAGCACATGCCAGGCTCGGGCATGTGCTGGTGCCGTATTT
519 ATCGGACCAGACT-GAGGGTCGCGACAGCACATGCCAGGCTCAGGCATGTGCTGGTGCCATATTT
* * * * * *
3594363 TTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACA-AGCGGCATTGGGGTTTC
583 TTCTTCATCGAGGAACCAACGCCAGAGCATCGTCGAAGAACCTGACAGA-CGGCATTGGGGTTCC
** * *
3594427 GACGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGTGATGGGTGTTGGTACTTAACCCTTAT
647 GACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAACCCTTAT
* * *
3594492 ATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
712 ATTGGCCACCTATCCATCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGACATTTT
* * *
3594557 ATAGGTTTGCTGCCAGTATCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
777 ATAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTAAAATGGGGAAACTTTTTTCAAATGGTCACAA
3594622 AATCTTGTACACTTC
842 AATCTTGTACACTTC
* * * * *
3594637 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
1 G-G-----A--T-CA----------CAT--CTAC-------CAA-GTTCAGGGC-A--AA-----
* * ** * * *
3594702 GGAC-CAAAACTCCTTTCAAAAAAATCTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCGT
29 -AACTC----CT-TTTGAAAAA--ATTTTAAAAAATCTCGAACCATAAAAAGTTTTGAAAATCGT
3594766 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
86 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
3594831 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
151 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGAGCCTAAACCCACCTAC
* * * * * *
3594896 CACCCTATCGATCCACGACTTACGCATCCCGTCTCTCTGGCCGGCGCAGT--GCCCGCCCGGCTG
216 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTCCGCCTGCCCGCCTG
* * * * *
3594959 CAC-GCTTGTTTCGTCGGTTGACTTAGGCATACGGTGTTCATTCCCAGTCTAAGATCGGACCAGA
281 C-CTGCTCGTTTCATCGGTTGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGATCGGACCAGA
3595023 CCGAGGGTTACAGCAGCA
345 CCGAGGGTTACAGCAGCA
3595041 CATTCTGGGC
Statistics
Matches: 1084, Mismatches: 128, Indels: 59
0.85 0.10 0.05
Matches are distributed among these distances:
856 4 0.00
857 755 0.70
858 1 0.00
859 1 0.00
864 1 0.00
866 1 0.00
867 1 0.00
877 3 0.00
879 3 0.00
886 3 0.00
887 6 0.01
888 1 0.00
890 2 0.00
895 1 0.00
896 2 0.00
898 81 0.07
899 3 0.00
900 6 0.01
902 209 0.19
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (856 bp):
GGATCACATCTACCAAGTTCAGGGCAAAAACTCCTTTTGAAAAAATTTTAAAAAATCTCGAACCA
TAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
ATGAGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
GTAGTCCGCCTGCCCGCCTGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACTGAGTTCATTCCC
AGTCTAAGATCGGACCAGACCGAGGGTTACAGCAGCAGGATCACCAGCACACAGAAGGGGACCCG
ACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGACTGAACACCCGCACGCTCGTTTCGTGG
GTTGACTTAGACATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGCCTAAGAT
CGGACCAGACTGAGGGTCGCGACAGCACATGCCAGGCTCAGGCATGTGCTGGTGCCATATTTTTC
TTCATCGAGGAACCAACGCCAGAGCATCGTCGAAGAACCTGACAGACGGCATTGGGGTTCCGACG
ATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAACCCTTATATTG
GCCACCTATCCATCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGACATTTTATAG
GTTTGCTGCCAGTAGCCACTAAAGTGTCTAAAATGGGGAAACTTTTTTCAAATGGTCACAAAATC
TTGTACACTTC
Found at i:3596773 original size:26 final size:26
Alignment explanation
Indices: 3596744--3596796 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3596734 GTTGACTTAG
*
3596744 GCATACGGAGATCATTCCTAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
* *
3596770 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
3596796 G
1 G
3596797 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:3597109 original size:880 final size:865
Alignment explanation
Indices: 3594985--3597222 Score: 2751
Period size: 883 Copynumber: 2.5 Consensus size: 865
3594975 GTTGACTTAG
* * * * * *
3594985 GCATACGGTGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACAGCAGCACATTCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** *
3595050 CTCGGGCATGTGCTGGTGCCTCATTTTTCTTCATCGTAGCACCATCATCGGAGCATCGCCGGAGA
66 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCG-AG--GC--CATC-G-GCAT--CC-G-G-
* * * * * *
3595115 ACCTAACTGGCGGCATTGGGGTTTCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
119 ACCTGA---GTGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGT
* *
3595180 GATGGGTGCTGGTATTTGGCCCATATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
181 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
*
3595245 CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
246 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
3595310 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTG
311 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTG
* * ** *
3595375 CATGCCAAGAAAAATAAAAGGATCATGTCTACTGAGTTTGGGGCCAAAAATCC-TTCCGAAAAAA
376 CATGCCAAAAAAAAT-ACAGGATCATGTCTACCAAGTTTGGGGCC-AAAACCCATTCCGAAAAAA
* **
3595439 TTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTG
439 TTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTG
*
3595504 CCATGAAACAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
504 CCATGAAACAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCACGCAGAAATA
3595569 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCACGTCTCTCTAG
569 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCACGTCTCTCTAG
** * *
3595634 CCGACGTAGTGCCCGCCCGCCCATTCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATT
634 CCGACGTAGTGCCCGCCCGCCCATTCGCTCGTTTCATCAGTTGGCTTAGGCATACAGAGTTCATT
* * * * *
3595699 CCCAGTCTAAGATCAGACCAAACCAAGGGTTGCGGCTGTAGGATCGACAGCACGTAGAGCAGAAC
699 CCCAGTCTAAAATCAGACCAAACCAAGAGTTGCGGCAGCAGGATCGACAGCACATAGAGCAGAAC
* * * ** * *
3595764 CTGACTGATCCCTGGCTTGTGCATCCCACCCCACTGGCCAGCTAAGCGCTCGTACACTCGTTTCG
764 CGGACTGACCCCCGGCTTGCACATCCCACCCCACTGGCCAGCTAAGCGCTCGTACACTCATTTCA
** * *
3595829 TGGGTTGACTTAGGTTTAGAGTTTATTCCCAGTCTAA
829 TGGGTTGACTTAGGCATAGAGATCATTCCCAGTCTAA
* ** * * *
3595866 GCATACAGAGTTCATTCCTAGTCTAAGATCGAATTAGACTGAGGGTTGTGGCAGGACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
3595931 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGG--CCA---TC-G-GCAT--CC-G-G-
*
3595996 ACCTGACCAGTGGCATTAGGGTTCCGACGATCGGGGGGGCCGAAGCGGGTGTGCGCACATGATGT
119 ACCTG---AGTGGCATTAGGGTTCCGACGATCGGGGGGGCCG--GGGGGTGTGCGCACATGATGT
* *
3596061 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCTCTCATCAAACCTCTAGAACTCAC
179 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *
3596126 ACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTCCCAGTAGCCATTAAAGTGTCTGAAAT
244 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
3596191 GGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTGCGACTTTTTAGCTGAATTTTTTTA
309 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTG
* ** *
3596256 TGCATGCCAACAAAAATACAGGAATCACATCTACCAAGTTTGGGGCCAAAACCCATTCTGAAAAA
374 TGCATGCCAAAAAAAATACAGG-ATCATGTCTACCAAGTTTGGGGCCAAAACCCATTCCGAAAAA
* * * *
3596321 ATTTTTAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCCTGAAAAATAGAGAACGAGTCATCTT
438 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
**
3596386 GCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATTTATTTACAAGCCATAAAAATGGCA
503 GCCATG--------A---AA--C--AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
3596451 TTAGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
553 TTAGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
* * * * *
3596516 CATCTCGTCTCTCTGGCCGGCGTAGTGCCCTCCCGCCCGTTCGCCCGTTCGTTTCATCAGTTGGC
618 CATCACGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCATTCG--C--TCGTTTCATCAGTTGGC
** * *
3596581 TTAGGCATACAGAGTTCATTCCCAGTCTAAAATTGGACCAGACCGAGAGTTGCGGCAGCAGGATC
679 TTAGGCATACAGAGTTCATTCCCAGTCTAAAATCAGACCAAACCAAGAGTTGCGGCAGCAGGATC
** * * * * **
3596646 TG-CAGCACATAGAGGGGGACCCGGTC-GACCCCCGGCTTGCACATCCCGCCCCTCTGGCTGGCT
744 -GACAGCACATAGA-GCAGAACCGGACTGACCCCCGGCTTGCACATCCCACCCCACTGGCCAGCT
* * *
3596709 GAGCGC-CTGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGATCATTCCTAGTCTAA
807 AAGCGCTC-GTACACTCATTTCATGGGTTGACTTAGGCATA--GAGATCATTCCCAGTCTAA
*
3596770 GCATAC-GTAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGG
*
3596834 GCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGG-CA-C-G-AT-C-G-CC-G-GTGGC
65 GCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCCATCGGCATCCGGACCTGAGTGGC
* *
3596890 ATTAGGGTTCCGACGATCGGGGGGACCGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTA
130 ATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTA
* * *
3596955 CTTGGCCCTTCTTTTTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCACTTAAAGAG
195 CTTGGCCCTT-ATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
* *
3597020 CATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTT
258 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
3597085 CAAATGGTCAGAAAATCTTGTACACTTCAATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
323 CAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* * * *
3597150 AAAACAAGGATCATGTGTACCAAGTTTGGGGCCAAAACTCCA-TCCAAAAAAAATTTAAAAAATC
388 AATAC-AGGATCATGTCTACCAAGTTTGGGGCCAAAAC-CCATTCCGAAAAAATTTTAAAAAATC
3597214 CTGAACCGT
451 CTGAACCGT
3597223 GGCTTGCGCA
Statistics
Matches: 1181, Mismatches: 135, Indels: 83
0.84 0.10 0.06
Matches are distributed among these distances:
878 47 0.04
879 5 0.00
880 253 0.21
881 142 0.12
882 10 0.01
883 311 0.26
884 2 0.00
885 2 0.00
887 1 0.00
890 1 0.00
891 1 0.00
893 2 0.00
894 3 0.00
896 1 0.00
897 1 0.00
898 137 0.12
900 1 0.00
901 3 0.00
902 141 0.12
903 9 0.01
904 108 0.09
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (865 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCCATCGGCATCCGGACCTGAGTGGCA
TTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
ACAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCATTCCGAAAAAATTTTAAAAAATCCTGAA
CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCACGCAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGACTTGCGCATCACGTCTCTCTAGCCGACGTAGTGCCCGCC
CGCCCATTCGCTCGTTTCATCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAAATCAGA
CCAAACCAAGAGTTGCGGCAGCAGGATCGACAGCACATAGAGCAGAACCGGACTGACCCCCGGCT
TGCACATCCCACCCCACTGGCCAGCTAAGCGCTCGTACACTCATTTCATGGGTTGACTTAGGCAT
AGAGATCATTCCCAGTCTAA
Found at i:3597266 original size:26 final size:26
Alignment explanation
Indices: 3597230--3597282 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3597220 CGTGGCTTGC
*
3597230 GCATACGGTGTTCATTCCTAGTCTAA
1 GCATACGGTGTTCATTCCCAGTCTAA
*
3597256 GCATATGGTGTTCATTCCCAGTCTAA
1 GCATACGGTGTTCATTCCCAGTCTAA
3597282 G
1 G
3597283 ATCGGACCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGTGTTCATTCCCAGTCTAA
Found at i:3598159 original size:26 final size:26
Alignment explanation
Indices: 3598129--3598181 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
3598119 GTTGACTTAG
*
3598129 GCATATGGAGTTTC-TTCCCAGTCTAA
1 GCATACGGAG-TTCATTCCCAGTCTAA
3598155 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3598181 G
1 G
3598182 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3599057 original size:26 final size:26
Alignment explanation
Indices: 3599021--3599071 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
3599011 GTTGACTTAG
* *
3599021 GCATACGGAGTTCGTTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3599047 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
3599072 GGATTGGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3599430 original size:903 final size:898
Alignment explanation
Indices: 3597230--3599816 Score: 3600
Period size: 903 Copynumber: 2.9 Consensus size: 898
3597220 CGTGGCTTGC
* * * * ***
3597230 GCATACGGTGTTCATTCCTAGTCTAAGCATATGGTGTTCATTCCCAGTCTAAGATCGGACCCGAC
1 GCATACGGAGTTC-TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAATAGAC
* * * * *
3597295 CGAGGGTTGCGGTAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGG
65 CGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTACTGGTGCCGCATTTTTCTTC-GCGGGG
* * *
3597360 CACCATCGTCGGAGTATCGTCGAAGAACCTGACCGACGGCATTGGGGTTCCGGCAATCGGGGGTG
129 CACCATCGTCGG-GTATCGCCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG-G
* * * *
3597425 CCAGGGGGGGTGTGCGCACATGATGTGCA-ATGGGTGTTGGTACTTGGCCCTTATATTGGCCACC
192 CC-CGGGGGGTGTGCGCACATGATGTG-AGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCC
* * *
3597489 TATCCCTCATCAAGCCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTACAGGTTTGT
255 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
3597553 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATAGTTA-GAAATCTTGTAC
320 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
3597617 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATGCAAGGATCACGTCTACCAA
385 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * *
3597682 TTTTGGGGTGAAAACTCCTTCCCAAAAAATTTTAAAATATCCCGAACCGTAAAAAGTTTCAAAAA
450 GTTTGGGGTGAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
*
3597747 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTG
515 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
3597812 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGGTGTGCCTAAACCCAC
580 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTTCCTAAACCCAC
* * *
3597877 C-AGCCACCCTATCGATCCACAGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGC
645 CTA-CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGC
* *
3597941 CCGTC-CAC-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTATAAGATCAGAC
709 CCGTCGCACGTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTATAAGATCAGAC
* * * * *
3598004 CAGATCGAGGGTTACGATAGTAGGATAAGCAGCACGTAGAGGGGGAGCTAGCCGATCCCAGCCTT
774 CGGACCGAGGGTTGCGGTAGCAGGATAAGCAGCACGTAGAGGGGGAGCTAGCCGATCCCAGCCTT
* *
3598069 ACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
839 ACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAG
* *
3598129 GCATATGGAGTTTCTTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ATCAGA
1 GCATACGGAG-TTCTTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAAT-AGA
* ** * * *
3598193 CTGAGGGTTGTGACAGCACATGCTCGGCTCGGGCATGTGA-TGATGCCGCATTTTTCTTCGCCGG
64 CCGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGT-ACTGGTGCCGCATTTTTCTTCGCGGG
* **
3598257 GCTACCA---TC----A---CCGAAGAACTTGACCGACAACATTGGGGTTCCGACGATCGGAGGG
128 GC-ACCATCGTCGGGTATCGCCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGG
* * * * * * *
3598312 G-CTGGCGGTTGTGCACAAATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCT
191 GCCCGGGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCT
* *
3598376 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAATAGCATTTGAAATTTTACAGGTTTGCT
256 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
3598441 GCCAGTAACCATTAAAGTGTCTGAAATGGCGACACTTTTTTGAAATGGTCACAAAATCTTGTACA
321 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
3598506 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCAACCAAG
386 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
* * *** ** * * **
3598571 TTTGGAGTGAAAAATCCTTTTGAAAAAATTTTAAAAAATCGTGAACCATAAAAGGTTTGTAAAAT
451 TTTGGGGTGAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * *
3598636 CATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTGCACGTGAAGGCTTAAGGGACCATTCT
516 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
** * * *
3598701 ATGAATTTACAAGCCATAAAAATGGCATTTCCATGCAAAAATATGAAGATATTCTTAAACCCACC
581 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTTCCTAAACCCACC
* * *
3598766 TACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAATGCCCGCCTGCCC
646 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCC
* * * * * **
3598831 GTCTGCTCGTTCGTTTCCTCGGTTGGCTTAGGCATACGAAATTCATTCCCAATCTAAGATTGGAC
711 GTC-GCACG-TCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTATAAGATCAGAC
** *
3598896 CGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGA-CTCGGCCGATCCCCAG-C
774 CGGACCGAGGGTTGCGGTAGCAGGATAAGCAGCACGTAGAGGGGGAGCT-AGCCGAT-CCCAGCC
* * * *
3598959 TTGCGCTTCCCGCCCCTCTGGTCGACTGAGCGCTCACACGCTCGTTTCATGGGTTGACTTAG
837 TTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAG
* * * *
3599021 GCATACGGAGTTCGTTCCCGGTCTAAGCATACGGAGTTCATTCCCAGTCTAGGATTGGAATGGAC
1 GCATACGGAGTTC-TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAATAGAC
*
3599086 CGAGGGTTGTGGTAGCACATGCTGGGCTCGGCCATGTACTGGTGCCGCATTTTTCTTCGTCGGGG
65 CGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTACTGGTGCCGCATTTTTCTTCG-CGGGG
* * *
3599151 CACCATCGTCGGTGTATCGCCGAAGAACCTGATC-AGCGGCATTAGGGTTTCGACGATCGGGGGG
129 CACCATCGTCGG-GTATCGCCGAAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGG
3599215 CCCGGGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTA
192 CCCGGGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTA
3599280 TCCAC-CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
257 TCC-CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
3599344 ACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
321 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
3599409 CTTCTAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAGTACAAGGATCACGTCTACCAAG
386 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
** * * *
3599474 TTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAACTCCCAAATCGTAAAAAGTTTCAAAAAT
451 TTTGGGGTGAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
*
3599539 CATGAAAAATAGATAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
516 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
3599604 ATGAATTTACAAACCATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTTCCTAAACCCACC
581 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTTCCTAAACCCACC
* * *
3599669 TACCACCCTATCGATCCACGGCTTTCGCATCCCGTCTCTCTGGCCGGCATAATGCCCGCCCGCCT
646 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCC
* * * * * *
3599734 GTCCGCCCGCTCGTTTCGTCGATTGGGTTAGGCATGCGAAGTTAATTACCAGTATAAGATCAGAC
711 GT-CGCACG-TCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTATAAGATCAGAC
3599799 CGGACCGAGGGTTGCGGT
774 CGGACCGAGGGTTGCGGT
3599817 GGCACATGCT
Statistics
Matches: 1469, Mismatches: 185, Indels: 64
0.86 0.11 0.04
Matches are distributed among these distances:
886 98 0.07
887 60 0.04
888 340 0.23
889 4 0.00
890 2 0.00
891 7 0.00
892 256 0.17
893 12 0.01
895 2 0.00
896 2 0.00
898 4 0.00
899 104 0.07
900 4 0.00
902 5 0.00
903 567 0.39
904 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
GCATACGGAGTTCTTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAATAGACC
GAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTACTGGTGCCGCATTTTTCTTCGCGGGGCA
CCATCGTCGGGTATCGCCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCCG
GGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
GGTGAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTTCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGTCGC
ACGTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTATAAGATCAGACCGGACCG
AGGGTTGCGGTAGCAGGATAAGCAGCACGTAGAGGGGGAGCTAGCCGATCCCAGCCTTACGCATC
CCGCCCCTCTGGCCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAG
Found at i:3600641 original size:26 final size:26
Alignment explanation
Indices: 3600605--3600657 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3600595 GTTGACTTTG
3600605 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
3600631 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
3600657 G
1 G
3600658 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:3604002 original size:26 final size:26
Alignment explanation
Indices: 3603965--3604014 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
3603955 GTTGACTTAG
3603965 GCATACGGAGTTAATTCCCAGTCTCA
1 GCATACGGAGTTAATTCCCAGTCTCA
* *
3603991 GCATACGTAGTTCATTCCCAGTCT
1 GCATACGGAGTTAATTCCCAGTCT
3604015 AGGATCGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTCA
Found at i:3604900 original size:26 final size:26
Alignment explanation
Indices: 3604863--3604912 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
3604853 GTTGACTTAG
3604863 GCATACGGAGTTAATTCCCAGTCTCA
1 GCATACGGAGTTAATTCCCAGTCTCA
* *
3604889 GCATACGTAGTTCATTCCCAGTCT
1 GCATACGGAGTTAATTCCCAGTCT
3604913 AGGATCGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTCA
Found at i:3605292 original size:899 final size:898
Alignment explanation
Indices: 3603090--3624149 Score: 24085
Period size: 896 Copynumber: 23.9 Consensus size: 898
3603080 GTTGACTTAG
* * * * * *
3603090 GCATACGGAGTTCATTCCCAGTCTAAGATCAAATC-GGATCGATGGCTACGACAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAA-CAGGACCGAGGGTTACGGCAGCACATGCTGG
* * * *
3603154 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCAGAGCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * *
3603219 AACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGTGGGTGTGCGTACATGATA
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGG-GGGTGTGCGCACATGATG
* *
3603284 TGCGAT-GGTGCTGGCACTTGGCCCTGATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
3603348 ACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
3603413 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGCTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
3603478 TGTGCATGCCAACAAAAATATAGGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * * * ** * * * *
3603543 ACATTTAAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGATTCATC
453 AAATTT-TAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
3603608 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
3603673 CATTGACACATAGAAATATGAAGATGTGCCCAAACCCACCTACCACACTATCGATCCACGGCTTG
582 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
3603738 CGTATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCACCCGCTCGCTCGTTTCGTTGGTTGGCTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * *
3603803 AGGCATACGGAGTTCATTCCCAATCTAAGATTGGACCAAATCGAGGGTTGCGGCAGCAAGATCGG
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGTAGCAGGATCGG
* * * *
3603868 CAGCACGCAGAGGGGGACCCGATCGATCCCTAGCTTGCACATCACGCCCCTCTGGCCGGCTGAGC
777 CAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
3603933 GCCCCGCACGCACGTTTCAAGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTCA
842 G-CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
3603991 GCATACGTAGTTCATTCCCAGTCTAGGATCGAACAGGACCGAGGGTTACAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
3604056 CTCGAGCATGTGCTGGTGCCGCAATTTTCTTCCCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
** * ** * * * **
3604121 AGTTGATCGATGGCATTAGGGTTCCGACGATCAAGAGGGG-CAAGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGGCCGGGGGGTGTGCGCACATGATGTG
** *
3604185 CGATGGGTGCTGGTACTTGAACCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
3604250 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
3604315 GGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
3604380 TGCATGCAAAAAAAAATACATGGATCACGTCTACCAAGTTTTGGGCCAAAACTTCTTTCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* *
3604445 ATTTTAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
455 ATTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
3604510 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
3604575 TGACACATAGAAATATGAAGATGTGCCCAAACCCACCTACCACACTATCGATCCACGGCTTGCGT
585 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
3604640 ATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCACCCGCTCGCTCGTTTCGTTGGTTGGCTTAGG
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * *
3604705 CATACGGAGTTCATTCCCAATCTAAGATTGGACCAAATCGAGGGTTGCGGCAGCAAGATCGGCAG
715 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGTAGCAGGATCGGCAG
* * * *
3604770 CACGCAGAGGGGGACCCGATCGATCCCTAGCTTGCACATCACGCCCCTCTGGCCGGCTGAGCGCC
780 CACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * *
3604835 CGCACGCACGTTTCAAGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTCA
845 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
3604889 GCATACGTAGTTCATTCCCAGTCTAGGATCGAACAGGACCGAGGGTTACAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
3604954 CTCGAGCATGTGCTGGTGCCGCAATTTTCTTCCCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
** * * * * **
3605019 AGTTGACCGGTGGCATTAGGGTTCCGACGATCAAGAGGGG-CAAGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGGCCGGGGGGTGTGCGCACATGATGTG
** *
3605083 CGATGGGTGCTGGTACTTGAACCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
3605148 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
3605213 GGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
3605278 TGCATGCAAAAAAAAATACATGGATCACGTCTACCAAGTTTTGGGCCAAAACTTCTTTCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* *
3605343 ATTTTAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
455 ATTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
3605408 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * * *
3605473 TGGCATGTAGAAATATGAAGATCT-ACTGAAACCCACCTACCACCCTATCGATCCACGACTTGCG
585 TGGCACATAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
3605537 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGGCTGCCTGGCCGCCTGCTCATTTCGTCGGTTAGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCC-GC--CC-GCCCGCCCGCTCGTTTCGTCGGTTGGC
*
3605602 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATC
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGTAGCAGGATC
** * * * *
3605667 AACAACACGTAGAGGGGGACCCGATCGAT-CCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTG
775 GGCAGCACGCAGAGGGGGACCCGACCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * ** * * * * *
3605731 AGTGCCCGTACACTAATGTCGTCGGTCGACTTAGGCATACGGAGTTTATTCCCAGTCTAA
839 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * ** * **
3605791 GCATACGGGGTTTATTCTCAGTCTAAGATCAAACCGGATTGAGGGTTACGACAGCACATGCAAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
3605856 CTCGGGCAAGTGCTAGTGCCGCATTTTTCTTCGCTGGCGCACCA---T-----CAT---TGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * * * * * * * *
3605910 ACCTGATCGACGACATTGGGGTTTCGATGATCGAGGAGGCCAGGGGGTGTACGTACATGATATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
3605975 GATGGGTGCT-GTACTTGGCCTTTATACTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
3606039 CCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATC
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
3606104 GGGACACTTTTTTTTGAAATGGTCACAAAATCTTGTACACTTTGGGTTTTTAGCTG-ATTTGTTT
326 GGGACAC--TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTT
* * * *
3606168 TGTGAATGCCAACAAAAATACAAGGATCGCGTCTACCAAGTTTCGAGCCAAAACTCCTTTCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* ** * ** * **
3606233 AAATTTAAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTAATC
453 AAATTT-TAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* **
3606298 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTATGAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
3606363 CATTGGCACACAG-AA-AT----A--TG----------------A----A--GATCCACGGCTTG
582 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
3606398 CGCATCCCGTCCCTCTGACCGACGTAGT----GCCCGCCCGTCCGCTCGTTTTGTCGGTTGTCTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
3606459 AGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAAATAGAAGGTTGAGGTAGCAGGATCAG
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGTAGCAGGATCGG
* * * * * * *
3606524 TAGCACGCAGAGGTGGACCCGACCGATCCCCGGCTTGCACATCCCACCCCTCTGGCCGGTTGAGT
777 CAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
*
3606589 GCCCGCACGCTCGTTTCGTCGGG-TGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 GCCCGCACGCTCGTTTCAT-GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
3606646 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACTGG-CATGAGGGTTGCGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGAC-CGAGGGTTACGGCAGCACATGCTGG
* * * * *
3606710 GCTCGGGCATGCGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * *
3606775 AACCTGACCGACGGCGTTGGGGTTCC-AGCGATCGGGGGGTCCGGGGGGGTGTGCGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATG
* * *
3606839 TGTGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
3606904 ACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
3606969 ATGGGGACATTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGGTTTTAGCTGAAGTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
3607034 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACGAAATTTGGGGCCAAAACCCCTTCCAAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * *
3607099 AAATTTCAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
453 AAATTT-TAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
3607164 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
3607229 TATTGGCATGCA-A-AAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCT
582 CATTGGCA--CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
3607292 TACGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCTCGTTTCGTTGGTTGCC
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * *
3607353 TAAGGCATACAGAGTTCATTCCTAGTCTAAGATCTGACCAGATCGAGGGTTTCAGTAGCAGGATC
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGTAGCAGGATC
* * * * * * *
3607418 GACAGCACGCAGAGAGGGACCCGACCGATCCCCGGCTTGCGCATCTCACCCCTCTGGCCAGTTGA
775 GGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * * *
3607483 GTGCCCGCACGCACGTTCCATGGGTTAACTGAGCCATACGGAGTTCATTCCCAGTCTAA
840 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
3607542 ACATACGAAGTTCATTCCCAGTCTAAGATCGGATTA-GACCGAGGGTTGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACAGGACCGAGGGTTACGGCAGCACATGCTGG
* * * * *
3607606 GCT-GGGCATGTGCTAGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAG
* ** * * * *
3607670 AACCTGAACGATGGCATTGCGGTTCCGACGATTGGGCGGGCCGAGGGGGTGTACGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGT
* *
3607735 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
3607800 CACCCCCTTAAAGAGCATGTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
3607865 TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
3607930 GTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCCGAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-CGAAA
* ** * * ** *
3607994 AAATTTCAAAAAATCCTAAACTGTAAAAAGTTTCAAAAATCAAGAAAAATAGAAAACGAGGCGTC
453 AAATTT-TAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
3608059 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *** *
3608124 CATTGTCATGCAGAATTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
3608189 CGCATCCCGTCTCTCTGGCCGGCGT-G-G--TGCCCGCCCGCCCGCTCGTTTCGTTGGTTGGCTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * *
3608250 AGGCATACGGAGTTCATTCCCAGTCTAACATCAGACCAGA-CTGAGGGTTGCAGTAGCAGGATCG
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATC-GAGGGTTGCGGTAGCAGGATCG
* * * * * *
3608314 ACCGCATGCAGAGGGGGACCCGACCGATCCCTGACTTGCGCATGCCACCCCTCTGGCCGGCTGAG
776 GCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
3608379 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAA
841 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * *
3608437 GCATGCGGAGTTCATTCCCAGTCTAGGATCGGATTGGACCAAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * *** *
3608502 CTCGAGAATGTGTTGGTGCTGCATTTCTT-TTTGTCAAAGGCACCATCGTCGGAGCATCGTCGGA
66 CTCGGGCATGTGCTGGTGCCGCATTT-TTCTTCG-CCGGGGCACCATCGTCGGAGCATCGCCGGA
*
3608566 GAACCTGATCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCAGGGGGGTGTGCGCACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATG
** * * *
3608630 TATGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCATATCCCTCATCAAACCTTGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
3608695 ACACCTCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTATGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
3608760 ATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * * *
3608825 TGGGAATGCCATCAAAAATACAAGGATCACCTCTACCAAGTTTGGTGTCGAAACTCC-TTCCAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* **
3608889 AAATTTTTAAAAGATCCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
453 AAA-TTTTAAAA-ATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
3608954 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * *
3609019 GCATTGGCACGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** *
3609084 GCGTTTCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCACGCTCGTTTCGTCAGTT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--C-C-CGCTCGTTTCGTCGGTT
* * * *
3609149 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGATGGTTGTGGTAGCAGG
707 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGTAGCAGG
* * * ** * * *
3609214 ATCAGTACCATACAGAGGGGGACCCAACCGAT-TCTCGGCTTACGCATCCCGCCCCTCTGGCCGG
772 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
3609278 CTGAGCACCCGCACGCTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
3609341 GCATGCGGAGTTCATTCCCAGTCTAGGATCGGACCGGACC-AGGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGA-GGGTTACGGCAGCACATGCTGG
* * * *** * * * *
3609405 GCTTGGGAATGTGTTGGTGCTAAATTTTTTTTCGTCAGGGCACCATCGTCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * * * *
3609470 AACCTGATCAGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGTTGTACGCCCATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * * *
3609534 CAATAGGTGCTGGTACTTGACCCTTATATTGGTCCCCTATCCCCCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
** * * *
3609599 ACCCTTTTAAAGTGCATTTGAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
3609664 GGGGACAC-TTTTTCAAATGGTCAACAAAATCTTGTACAGTTTGAGTTTTTAGCTGAA-TTTGTT
325 GGGGACACTTTTTTCAAATGGTC-ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
3609727 GTGCAAGCCAA-AAAAATACAAGGAT---GTATACCAAGTTTGGGGCCAACACT-CTTTCCG-AA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-CGAAA
* * *
3609786 AAATTTTTAAAATCCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA-GAGTCGTC
453 AAATTTTAAAAATCC-CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
3609850 TTGCCATGAAACTTCACGTGAA-GCTTTAAGGGACCATCTGTATGAAATTAACAAGCCATAAAAA
517 TTGCCATGAAACTTCACGTGAAGGC-TTAAGGGACCAT-TGTATG-AATTTACAAGCCATAAAAA
* * *
3609914 TGGCATTGG-TCAGA-AAAT-TGATAGATATG-CTAAACCCACCTACCACCCTATCGATCCACGG
579 TGGCATTGGCACATAGAAATATGA-AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
** ** * * *
3609975 C-TGCGCATCCTATCTCTCTGGCC-AAG-AGTGCCCG--C-CCTG-CC-CTCGTCTCATC--TTG
643 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* ** *
3610030 GCTTAGGC-TACGGAGTTCATTCCCA-TCTAAGATCAGACCAGAT-GAGGGTTTTGGCAGCA-GA
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGTAGCAGGA
* * *
3610091 T-TGCAGCAC-CA-A-----A---G--GGA-CCC-GGCTTGCGCATCCCGCCCCTCTGGCCGACT
773 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
3610141 AAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
838 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
3610202 GCATATGGAGTTCATTCCTAGTCTAAGATCAGATCA-GACCGAAGGTTGCAGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACAGGACCGAGGGTTACGGCAGCACATGCTGG
* * * ** * * * *
3610266 GCTTGGGCATGTGCTGGTGCTGTATTTTTCTTCGTTGGGGCACCATCATCGAAGAATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * *
3610331 AACCTGACAC-GCGTCATTAGGGTTTCGATGATC-----GG-C--GGGGTGTGCGCACATGATGT
130 AACCTGAC-CGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
*
3610387 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
3610452 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAAGTAAAGTGTCTAAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * **
3610516 TAGCGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATGATTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
3610581 GTGCATGCCAACAAAAATACAGGGATCACATCTACCAAGTTTGGGGCCAAAACTCCATTC-AAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
** * *
3610645 AATTTTAAAAAATATCGAACTGGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTT-AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
3610710 TGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTCTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
3610775 ATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * ** * *
3610840 GTATCCCATCCCTCTGGCCGATGTAGTTCCCGCCCGCCCACCTGCCCGCTCGTTTCGTCGATTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CC-GCCCGCTCGTTTCGTCGGTTGG
* ** *
3610905 CTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATTGGACTGGA-CTAAGGGTTGC-GTAGCAGGA
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATC-GAGGGTTGCGGTAGCAGGA
* * * * * *
3610967 TCAGCAGCACGCAGA-GGGGACCCGACCGATCCCTGTCCTGCGTA-CCACACCCCTCTGGCCGGT
773 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCC-CGCCCCTCTGGCCGGC
** * *
3611030 TGAGCGCCCATACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAG--T--
837 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
3611088 -C-TA---AG---A-T--C-G-----GAT----C-GGACTGAGGGTGACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * * * *
3611131 CTCGGGCATGTGCTGCTGCCGTATTTTTCTTCGTCGGGGCACCATGGCCAGA-CGTC-AC-GAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * *
3611193 ACCTGAACC-GTGGCATT--GG-TCCGATGATTGGGCGGGCCAGGGGGTGTTCGCACATGATGTG
131 ACCTG-ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
3611254 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
3611319 A-CCCCTTAAAGAGCA-TTGAGATTTTAC-GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
3611381 GGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA--GTTTT
325 GGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
3611444 -TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC-TTCG-AAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* * ** * *
3611506 AATTTTAAAAAATCTCGAATCATAGAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 AATTTT-AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
3611571 TGCCATGAAACTTCATGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** *
3611636 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
3611701 GCATCCCG--TCTCTGGTCGGCGTAGTGCCTGCCGACCCGCCCACCCGCTCGTTTCGTCAGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTG-C--CCG-CCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * *
3611764 CTTAGGCATACGGAGTTCCTTCCTAGTCTAAGATAGGACCGGA-CGGAGGGTTGCTGCAGCAGGA
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATC-GAGGGTTGCGGTAGCAGGA
* * ** * * *
3611828 TTGGCAGCACGCAGAGGGGGACCCAACCGATCCCCAGCTTCCGTATCCCGCCCCTCTGGCCGACT
773 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
*
3611893 GAGCGCCCCCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
838 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
3611950 -C-TA---AG---A-T--C-G-----GA-C---C-GGACCGAGTGTTACGATAGCTCATCCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * ** * *
3611993 CTCGGGCATATGTTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* **
3612058 ACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACA-GATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
3612122 GAT-GGTGCTGGTACTTGGCCCTTCTATTGG-CCTCTATCCCTCATCAAACCTCAAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
3612185 TCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA-TGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
**
3612249 GAAAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTG
326 G-GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * * *
3612313 TTCATGCCAAAAAACAATACAGGGGATCACATCTACCAAGTTT-GGGCCAAAACTTCTTCCAAAA
390 TGCATGCCAACAAA-AATACA-AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * **
3612377 AAATTTTAAAAAT-CTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
453 AAATTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
3612441 TGCCATGAAACTTCCACGTGAAGGCTTAAGAGG-CCATTGTATGAATTTACAAGCCATAAAAATG
518 TGCCATGAAACTT-CACGTGAAGGCTTAAG-GGACCATTGTATGAATTTACAAGCCATAAAAATG
*** *
3612505 GCATTGGCATGCAGAAATATGAAGATGTGCCT-AAGCCACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
3612569 GCGC-TTCCGTCTCTCTGGCCGGCATAGTGCCTGCCCGCCGCCACCCACTCATTTCGTCGGTTGG
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-C-CCGCCCGCTCGTTTCGTCGGTTGG
* * * *
3612633 CTTAGGCATACGAAGTTTCGATTCCTAGTCTAAGATAGGACCCAGACCGAGGGTTGCGGTAGCAG
709 CTTAGGCATACGGAG-TTC-ATTCCCAGTCTAAGATCGGA-CCAGATCGAGGGTTGCGGTAGCAG
* * * *
3612698 G-TTGGCAGTACGCA-AGGGGGACCC-AGTCGATCCCCGGCTTGCTGCATCCCCGCCCCTCTGGC
771 GATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCTGGCTTGC-GCAT-CCCGCCCCTCTGGC
* * *
3612760 ACGGCTGAGCCGGCCTGACACGCTTGTTTTCATGGGTTG-CCTAGGCATACGGAGTTCATTCCCA
833 -CGGCTGAG-C-GCCCG-CACGCTCG-TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
*
3612824 GTCCAA
893 GTCTAA
* * * *
3612830 G-AT-CGGA---C--T----G-----GA-C---CA--AGCG-GTG-TACGATCAGCGCATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTACG-GCAGCACATGCTGG
* ** * * * * * *
3612871 TGCTCAGAGCATACGCTGGTTGCCACATTTTTCTTCGTCAGGGCACCATCAGGCGTAGCATCACC
65 -GCTC-GGGCATGTGCTGG-TGCCGCATTTTTCTTCGCCGGGGCACCATC-GTCGGAGCATCGCC
* * * * * * *
3612936 GGACAA-CTGACCGACGGAATTGGGGTTCC-AGCAATTGGTGGGGTCGGGGGCG-GTGCGCACAT
126 GGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGG-GTGTGCGCACAT
* * *
3612998 GATGTGGGATGGGGTGCTGGTACTTGGCCCTTCTATGTGG-CCCCTATCCCTCATCAAACCTCAA
189 GATGTGCGAT-GGGTGCTGGTACTTGGCCCTTATAT-TGGCCCCCTATCCCTCATCAAACCTC-G
* * *
3613062 AGAAATCCACACCCCCTTAAAG-GCATTTTGAGATTTTATAGGTTTGCTGTCAGTAGCCA-TAAA
251 AGAACT-CACACCCCCTTAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
3613125 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAGTTTTTAGCT
314 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * * * **
3613190 GAATTTTTTTATGCATGCGAAAAAAAATACAGGGATGATATCTACCAAGTTTGGGGCCAAAACTC
379 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * ** *
3613255 CTTCCGAAAAAATTTTAAAAACTCTCAAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAA
444 CTTTCGAAAAAATTTTAAAAA-TCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
* * * * *
3613320 CCAGTCATCTTGCCATGAAGCTTCACGTGAAGGCGTAAGGGGCCATTGTATGAATTTACAAGCCA
508 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * *
3613385 TAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAGCGCACCTACCACCCTATCGATC
573 TAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * *
3613450 CACGGCTTGCGCTTCTCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTC
638 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTC
* * * * * *
3613515 GGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATAGGATCGGACCGAGGGTTGCGGCAG
703 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGTAG
* * * * * * *
3613580 TAAGATTGGCAGCACGCAGAGGGGGACTCAACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGC
768 CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGC
** * * *
3613645 CTTCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGCCTTAGGCATACGGAGTTCATTTCCAGTCTA
833 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
3613710 A
898 A
* * * * * ** *
3613711 GCATACGGAGTTCATTCCAACTCTAAGATTGGACTGGACCGAGGGTTGTGGAAGCTA-ATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTACGGCAGC-ACATGCTGG
* * * * * * * *
3613775 GTTCGGGCATATGCTGGTGCTGCATTTTTCTTTGCCGAGGCACCATCGCCGAAGCACCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAG
** ** *
3613840 AACCTGACCGATGAAATTAGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * **
3613904 CGATAGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
3613969 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
3614034 --GGACACTTTTTTCAAATGGTCACAAAATCTCGTACACTTCAAGTTTTTAGCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
3614097 TGCATGGCAAAAAAAAAACATAGGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAA
390 TGCATGCCAACAAAAATACA-A-GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * ** *
3614162 AAATTTGAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGGAAAATAGAAAACGAGTCGTC
453 AAATTT-TAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
3614227 TTGCCATGAAACTTCAGGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
3614292 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
*
3614357 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * * * *
3614422 AGGCATACGAAATTAATTCCCAGTCTAAAATTGGACCGGACCGAGGGTTGAGGTAGCAGGATCGA
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGTAGCAGGATCGG
* * * * * *
3614487 CAGCATGCAGAGGGGGACCCGACTGAT-CCTCGACTTGTGCATCCTGCCCCTCTAGCCGGCTGAG
777 CAGCACGCAGAGGGGGACCCGACCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
3614551 CGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAA
841 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
3614609 GCATATGGAGTTCGTTCCCAGTCTAAGATCGGACCA-AACCGATGGTTACAGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACAGGACCGAGGGTTACGGCAGCACATGCTGG
* * *
3614673 GCTCGGG-ATGTGCTGGTGCCTCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAG
* *
3614737 AACTTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGTGGGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
3614800 CGATGGATGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
3614865 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
3614930 --GGACACTTTTTTCAAATGGTCACAAAATCTCGTACACTTCAAGTTTTTAGCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
3614993 TGCATG-CAA-AAAAAAACATAGGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAA
390 TGCATGCCAACAAAAATACA-A-GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * ** *
3615055 AAATTTGAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGGAAAATAGAAAACGAGTCGTC
453 AAATTT-TAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
3615120 TTGCCATGAAACTTCAGGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
3615185 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
*
3615250 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCTCATTTCGTCGGTTGGCTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * * * *
3615314 AGGCATACGAAATTAATTCCCAGTCTAAAATTGGACCGGACCGAGGGTTGAGGTAGCAGGATCGA
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGTAGCAGGATCGG
* * * * * *
3615379 CAGCATGCAGAGGGGGACCCGACTGAT-CCTCGACTTGTGCATCCTGCCCCTCTAGCCGGCTGAG
777 CAGCACGCAGAGGGGGACCCGACCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
3615443 CGTCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAA
841 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
3615501 GCATATGGAGTTCGTTCCCAGTCTAAGATCGGACCA-AACCGACGGTTACAGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACAGGACCGAGGGTTACGGCAGCACATGCTGG
* * *
3615565 GCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAG
*
3615630 AACTTGACCGGCGGCATT-GGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
3615694 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
3615759 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
3615824 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAG-TTTTAGCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
3615888 TGCATGCCAATC-AAAACACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
390 TGCATGCCAA-CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* * **
3615952 AATTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 AATTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
3616017 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*** *
3616082 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACGCACACTATCGATCCACGGCTTGC
584 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTAC-CACCCTATCGATCCACGGCTTGC
* * *
3616147 GCATTCCGTCTCTCTGGCCGCCGTAGT----GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * *
3616208 GGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGATAGAGGGTTGCGGTAGTAGGATCAGC
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGTAGCAGGATCGGC
** ** * * * *
3616273 AGCACATAGAGGGGGACCCGGTCGATCCCCGGCTTCCGCATCCCGCCCCTCTGGCCGGTTGAGCA
778 AGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
** * *
3616338 CCATCACGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCGGTCTAA
843 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
3616394 G-AT-C--A----A-----A--C---G---G--GATG--C-AGGGTTACGACAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
3616433 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCTTCGGAGCATCTCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * *
3616498 ACCTAATCGGCGGCATTAGGGTTTCGGCGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
3616563 GATGGGTGCTGGTAGTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
3616628 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATTG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
3616693 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAA-TTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** * *
3616757 GCATGCCAACAAAAATACAAGGATCACGTCTACCAATTTTGGGGGTAAATCTCCTTTGGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
** *
3616822 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
456 TTTT-AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
**
3616887 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
**
3616952 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
585 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
3617017 ATTCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCCCACCCGCTCATTTCGTCAGTTGGCT
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG----CCCGCTCGTTTCGTCGGTTGGCT
* * * * * *
3617082 TAGTCATACGGAGGTCATTCCTAGTCTAAGACCGGACCAGA-CTGAGGGTTACGGTAGTAGGATC
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATC-GAGGGTTGCGGTAGCAGGATC
* * * * *
3617146 GACAGGACACAGAGGGGGATCCGACCGATCCCCT-GCTTGCGCATCCCGCCCCTCTGGCCAGCTG
775 GGCAGCACGCAGAGGGGGACCCGACCGAT-CCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
3617210 AGCGCTCGCACGCTCGTTTCATGGGTTTACTTAGGCATATGGAGTTCATTCCCAGT-T--
839 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
3617267 ---TA---AG---A-T--C-G-----GA-C---C-GGATCGAGGGTTGCGGCAGCACATGCACGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTACGGCAGCACATGCTGGG
** * *
3617309 CTCGAACATGTGCTGGTGCCGCATTTTTCTTTGTCGGGG---CA----C----CATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
** * *
3617363 ACCTGACCGGCGGCATTGGGGTTCCGGTGATCGAGGGGGCCGGGGGGTGTGCACACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* ** * *
3617428 GATGGGTGCTGGAACTTGGATCTTATATTGGCCCCCTATCCCTCATCAAATCTTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
3617493 CCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-----T-
* * *
3617558 GGGACACCTTTTTCAAATGGGGACACCTTTTTCAAATGGTCACAAAGTCTTGTACACTTTGAGTT
320 --G-----------AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * *
3617623 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTAGCGGCA
372 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * *
3617688 AAAACTCC-TTCCAAAAAATTTTAAAAAATTCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
437 AAAACTCCTTTCGAAAAAATTTT-AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
* * *
3617752 TAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTA-GCAATTC
501 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG-AATTT
*
3617816 ACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTACCTAAACCCACCTACCACCC
565 ACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
3617881 TATCGATCCATGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGGCCGCCTGCCCGCTC
630 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTC
* **
3617946 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGGA-TGGA-CTGAGG
695 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-CGGACCAGATC-GAGG
** * * * ** * * *
3618009 GTTATGGCAGCAGGATTGACAGCACGCAGA-GGGGA-CCGACTAATCCCCGACTTGCGCATCCTG
758 GTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCG
* * *
3618072 CCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGT-GTTTGACTTAGGCATACGGAGTTCAT
823 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
*
3618136 TCCCAGTTTAA
888 TCCCAGTCTAA
* * * *
3618147 GCATACGAAGTTCATTCCCAGTCTATGATCTG-ACTA-GACCGAGGGTTGCGGCAGCACACGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAAC-AGGACCGAGGGTTACGGCAGCACATGCTG
* * * * * *
3618210 GGCTTGGGCATGTGCTGGTGCCACATTTTTCATCGCCGGGGGACCATCGTCGGAGCATTGCCAGA
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGA
* * * *
3618275 GAACCTGACCAGCGGCATTGGGGCTCCAATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
3618340 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
3618405 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCGTTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
3618470 TGGGGACACTTTATTCAAATGGTCACAAAATCTTCTACACTTCGAATTTTTAGTTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
3618535 GTTCATGCCAACAAAAATACAAGGATCACGGCTACCAAGTTTGAGGCCAAAACTCCTTTC-AAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
** **
3618599 AGATTTTAAAAAATCTTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
454 A-ATTTT-AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * *
3618664 TTGCCACGAAACTTCACATGAAAGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * *
3618729 CATTCGCATACAGAAATATGAAGATTTGCCTAAACCCAACTACCACCCTATTGATCCACGGCTTG
582 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
3618794 CGCATCCCGCCTCTCTGGCCGACGTATTGCCCGCCCGCCCGTCCGCTCGCTTCGTCGGATGGCTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * * * * * *
3618859 AAGCATATGGAGTTCATTTCCAATCTAAGATCGGACCGGACCAAGGCTTGTGGCAGTAGGATCGG
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGTAGCAGGATCGG
* * ** * * * *
3618924 TAGCACGTAGAAAGGGACCTGGCCGATCCCTGTCTTACGCATCCCGCCCCTCTGGCCGGCTGAGC
777 CAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
3618989 GTCGGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
3619046 GCATATGGAGTTCGTTCCCAGTCTAAGATCAGACCA-AACCGACGGTTACAGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACAGGACCGAGGGTTACGGCAGCACATGCTGG
* * * *
3619110 GCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * *
3619175 AACTTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGGGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
3619240 CGATGGATGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
3619305 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
**
3619370 GGGGACACTTTTTTCAAAAT-GTCACAAAAAATTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 GGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
3619434 GTGCATGCCAATAAAAATACAAGGTTCCCATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* ** * *
3619499 AATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAAGAGAAAACGAGTGGTCT
454 AATTTT-AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
3619564 TGGCATGAAACTGCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
3619629 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** * * *
3619694 GCATCCCGCCTCTCTGGCCGATGTAGT----GCCCGCCTG--C-C-CATTTCGTCGGTTAGCTTA
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * * *
3619751 GGCATACGGAGTTCATTCCAAGTCTAACATCAGA-CTGTATC-ACGAGTTGCAGCAGCAGGATCA
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ATCGA-GGGTTGCGGTAGCAGGATCG
* * * * *
3619814 GCAGCATGCAGAGAGGGATCGGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
776 GCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
3619879 CGCCCGCACGCTCATTTCATGGGTTGAGTTAGGCACACGAAGTTCATTCCCAGTCTAA
841 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** * *
3619937 GCATACGAAGTTCATTCCGAGTCTAAGATCAGATC-GGACTGAGGGTTGTGGCGGCCCATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACAGGACCGAGGGTTACGGCAGCACATGCTGG
* * * * * * * * * ***
3620001 GTTCGGGTAGGTGCTAGAGCCACATTTTTCTTCGTCGTGGCACCATCGCCGGAGCATCGTTAGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAG
*
3620066 AACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGAGGGGGGTGTGCGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATG
*
3620131 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
3620196 ACACCCCCTTAAAGAGCAATTT-AGATTTTACAGGTTTGCAGCCAGTAG-CATTAAAGTGTCTGA
258 ACACCCCCTTAAAGAGC-ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
** * *
3620259 AAT--GG--AC-TTACT-AAATGGTCAC-AAATC-TGTACACTTCCAGTTTATAGCTGAA-TTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
3620315 GTGTGCATTGCCAACAAAAATACAAGGATCACATCTACCAAG-TTGGGGCCAAAACTCGTTGCGA
387 TTGTGCA-TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
*
3620379 AAAAATTTTAAAAATCTCAGACGAACCG-ATAAAG-TTCAAAAATACGTTGAAAAATAGAAAACG
451 AAAAATTTTAAAAATC-C---CGAACCGCAAAAAGTTTCAAAAAT-CG-TGAAAAATAGAAAACG
* * **
3620442 AGTCATACTCTTGCCTTGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGAA
510 AGTC---GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
3620506 ACAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
572 ATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * *
3620571 CCACGGCTTGCGCATCTCGTCTCTTTGGCCGACATAGTGCCTGCCCGCCCGTCCGCCCTCCCGCT
637 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCG--C--CCGCCCGCCCGCT
*
3620636 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC--A--A-A-CCA--G
694 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGG
* ** * * * * * *
3620693 -T-CCG-A--A-GATCAACAACACGTAGAGGGGCA-CCGATCGATCCCCGGCTTGCGCATCCCAC
759 TTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGC
* * * ** * * *
3620751 CCTTATGGCCGGTTGAGCGCTTGCACGCTC--TT-GTGGGTTAACTTAGGCATACAGAGTTCATT
824 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
* *
3620813 TCCAATCTAA
889 CCCAGTCTAA
** * * * ** *
3620823 GCATGTGGAGTTCATTCCCAATCTAAAATCAGATC-GGATTGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACAGGACCGAGGGTTACGGCAGCACATGCTGG
* * * *
3620887 GCTCGGGCATGTGCTGGT-CTGCATTTTTCTTCGCTGCGGCACCATCGTCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAG
* *** ** *
3620951 AACCTGACCTGCCATATTGGGGTTCCGACGATCGGGTGGGCTGGGGGGTGGGTGTGCACACATGA
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGG--GCCGGG-GGGTGTGCGCACATGA
* * * *
3621016 TGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTTATCAAACCTTGAAAAC
191 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
3621081 TCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTG
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
3621146 TAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * *
3621211 TTTATGCATGCCAACAAAAATACAAGGATCATGTCTACAAAGTTTGGGGCCAAAACTCCTTCCGA
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
* *
3621276 AAAAATTTTAAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTC
451 AAAAATTTT--AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
3621341 GTCTTGCCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTTACAACCCAT-AAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
3621405 TGGCATTGGTACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCTCCC-ATCGATCCACGGC
579 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
3621469 TTGCGCATCTCGTCTCTCTGGGCGACGTAGT--------GCTCGCCCGCTCGCTTCGTCAGTTGG
644 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * *
3621526 CATAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGGAGGGTTACGACT-GTAGG
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATC-GAGGGTTGCG-GTAGCAGG
** * * * * * * *
3621589 ATCAACAGCACACAGAGGGTGACCC-AGCCGATCCCCGACTTGCGAATCCCACCCCTCTGGCCGA
772 ATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGG
3621653 CTGAGCGCCCGCACGCTCGTTTC--GGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
836 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
3621710 -C-TA---AG---ATT----G-----GAT-----TGGACCG-GGGTTACGGCAGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
3621752 CTCGAGCATGTGCTGGTGCCGCATTTTGCTTCGTCGGGGCACCA---TC---G--T---CGGAG-
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
3621805 ACCTGACCGGCGGCATTGGGGTTCCAACGATCGGGGGGGTCAGGGGGTGTGCGCACAATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCAC-ATGATGTG
* * *
3621870 CAATGGGTGCTGGCACTTGGCCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCA
195 CGATGGGTGCTGGTACTTGG-CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
3621935 CA-CCCCTT-AAGAGCATTTGAGATTTTACA-GTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
3621997 TGGGGACACTTTTTTC-AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
3622060 GTGCACGCC-A-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCCGAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-CGAAA
* * *
3622122 AAATTTTAAAAAATCTCGAAACCGCAAAAATTTTCAAAAATCGTGAAAAATAGAAAACGAGTCAT
453 AAATTTT-AAAAATCCCG-AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
3622187 CTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* ** *
3622252 GTATTGGCACATAGAAATATGAAGATGCACCTAAAGCCACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
3622317 GCGTATCCCGTCTCTCGGGCCGGCGTAGTGCCCGCCCTCCTGCCCGCCCGCTCGTTTCGTCGGTT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CC-GCCCGCCCGCTCGTTTCGTCGGTT
* * **
3622382 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATGACTGGA-CTGA-CGTA-TTTTGC-GT-G
707 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT--C-GGACCAGATCG-AGGGTTGCGGTAG
* ** ** * * * * * *
3622442 CATGCGCAGGTTCAGCAC-TTGA-GGTGA-CAGA-TGGT-CC--GCTTGAAGCAT-CC-CACC-C
768 CAGGATC-GG--CAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTG-CGCATCCCGCCCCTC
* * * * ** *
3622497 -AGCCGGCT-AGCGCCAGCATG--CG---CAAGACTGTAACTT--G--T---G-GTTCATT----
829 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT-TGACTTAGGCATACGGAGTTCATTCCCA
3622543 -TCTAA
893 GTCTAA
* * * *
3622548 GCAT-GGGAGTTAATTCCCAGTCT-AGATCG-AC-CGACC-AGGGTTGCGGCAGCA-ATGCT-GG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTACGGCAGCACATGCTGGG
* ** * *
3622606 CATCGGGCATGT-CT--TGTCGCA--CATCTTCTG--AGGG--CCA---TCGGA--A---ACGG-
66 C-TCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GCCGGGGCACCATCGTCGGAGCATCGCCGGA
* * * * ***
3622653 GAA---G--C-GCAGCATT-GGGTTTCGA-GGT-GGAGGGGG--GGAGGCAAT-CGCA-A-G-TG
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGGCCGGGGGGTGTGCGCACATGATG
* * * *
3622703 T---AT-GGTGC-AGTACTTGG--CTT-TA-----ACCCAAT-CCTCATCAAAGCCT-----TCT
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CCTCGAGAACT
* *
3622749 CACA---CCTTTAAGCA-CATTTGAG--TTTA-A-G-TTG-TG-C---AG-CA-TAACGTGTCTG
257 CACACCCCCTTAAAG-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * *
3622798 -AATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTTA-CGGTATTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTG-AATT
*
3622861 TTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC-TTC
384 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
* * ** * *
3622925 TGAAAAAACTTTAAAAAATCTCGAAAGGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAG
449 -GAAAAAA-TTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* *
3622990 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAGGCCATAAA
512 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
3623055 AATGGCATTGGCACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGAT-CACG
577 AATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
3623119 ACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCCCACCCGTTCGTTTCGTC
642 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C--CCGCCCGCCCGCCCGCTCGTTTCGTC
* * * * * *
3623184 AGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGCAGTAG
703 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGTAG
** * * * * * * *
3623249 CAGGATCAACAGCACGCAGAGAGGGACCTGGCTGATCCCTGACTTGCGCATCCCGTCCCTTTGGC
768 CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGC
* * * * *
3623314 CGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTAACATAGGCATACAGAGTTCATTCCCAGTCTA
833 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
3623379 A
898 A
* * * * *
3623380 GCATACGGAGCTCATTCCTAGTCTAAGATCGAACCA-GACCGAGGGTTGCGGTAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAA-CAGGACCGAGGGTTACGGCAGCACATGCTGG
** * * * ** *
3623444 GCTCGAACATGTGCTGGTGTCAG-ATTTTTCTTCGCCAGGACACCATCACCGGAGCATCACCGGA
65 GCTCGGGCATGTGCTGGTG-CCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGA
* * *
3623508 GAACCTGACCGGCGGCATTGGGATTCCGACGATCGGGGGGGCCGGGGGGTGTGCGTAAATGATGT
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * * *
3623573 GCGATGGGTGCTGGTACCTGGCTCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAAAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
3623637 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGTAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
3623702 TGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
3623767 GTGCATGCAAACAAAAATACAGGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCATT-GAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* * ** * *
3623831 AAGTTTTAAAAAATCTCGAACCACAAAATTTTTCGAAAATCTTGAAAAATAGAAAACGAGTC-T-
454 AA-TTTT-AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
3623894 TTGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
3623959 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
3624024 CGCATCCCGTCTCTCTGGCCGACGTAATGCCCGTCGCCCGCCCGCTCACTCGTTTCATCGGTTGG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTG-CC--CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * *
3624089 CTTAGGCATACAGAGTTCATTCCCACTCTAAGATCGGACCGGA-CTGAGGGTTGCGGTAGCA
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATC-GAGGGTTGCGGTAGCA
3624150 CATGCTGGGC
Statistics
Matches: 17595, Mismatches: 1892, Indels: 1346
0.84 0.09 0.06
Matches are distributed among these distances:
803 19 0.00
804 50 0.00
805 17 0.00
806 110 0.01
807 165 0.01
808 65 0.00
809 7 0.00
810 9 0.00
811 9 0.00
812 4 0.00
813 4 0.00
814 11 0.00
815 20 0.00
816 7 0.00
817 2 0.00
819 5 0.00
820 13 0.00
821 8 0.00
823 1 0.00
826 3 0.00
827 10 0.00
830 7 0.00
831 5 0.00
832 11 0.00
833 15 0.00
834 6 0.00
835 4 0.00
836 7 0.00
837 15 0.00
838 13 0.00
839 17 0.00
840 6 0.00
841 5 0.00
842 11 0.00
843 26 0.00
844 160 0.01
845 54 0.00
846 57 0.00
847 53 0.00
848 46 0.00
849 50 0.00
850 49 0.00
851 44 0.00
852 12 0.00
853 130 0.01
854 120 0.01
855 303 0.02
856 26 0.00
857 36 0.00
858 150 0.01
859 111 0.01
860 89 0.01
861 470 0.03
862 243 0.01
863 75 0.00
864 149 0.01
865 320 0.02
866 405 0.02
867 221 0.01
868 518 0.03
869 232 0.01
870 139 0.01
871 158 0.01
872 66 0.00
873 19 0.00
874 37 0.00
875 87 0.00
876 270 0.02
877 72 0.00
878 77 0.00
879 39 0.00
880 113 0.01
881 66 0.00
882 106 0.01
883 77 0.00
884 347 0.02
885 199 0.01
886 227 0.01
887 257 0.01
888 334 0.02
889 213 0.01
890 295 0.02
891 449 0.03
892 523 0.03
893 801 0.05
894 251 0.01
895 1236 0.07
896 1563 0.09
897 308 0.02
898 1293 0.07
899 1289 0.07
900 375 0.02
901 337 0.02
902 510 0.03
903 137 0.01
904 323 0.02
905 3 0.00
906 3 0.00
909 1 0.00
910 1 0.00
914 184 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
TTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGTAGCAGGATCGGCAGC
ACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:3605803 original size:26 final size:26
Alignment explanation
Indices: 3605765--3605817 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3605755 GTCGACTTAG
3605765 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTTATTCCCAGTCTAA
* *
3605791 GCATACGGGGTTTATTCTCAGTCTAA
1 GCATACGGAGTTTATTCCCAGTCTAA
3605817 G
1 G
3605818 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTTATTCCCAGTCTAA
Found at i:3606657 original size:26 final size:26
Alignment explanation
Indices: 3606620--3606672 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3606610 GGTGACTTAG
*
3606620 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3606646 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3606672 G
1 G
3606673 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:3607546 original size:26 final size:26
Alignment explanation
Indices: 3607517--3607567 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3607507 TTAACTGAGC
*
3607517 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGAAGTTCATTCCCAGTCTAAA
3607543 CATACGAAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATTCCCAGTCTAA
3607568 GATCGGATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAA
Found at i:3609351 original size:26 final size:26
Alignment explanation
Indices: 3609315--3609365 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3609305 GTTGACTTAG
3609315 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3609341 GCATGCGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
3609366 GGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3610206 original size:26 final size:26
Alignment explanation
Indices: 3610176--3610228 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3610166 GTTGACTTAG
3610176 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
3610202 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
3610228 G
1 G
3610229 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:3613735 original size:26 final size:26
Alignment explanation
Indices: 3613685--3613737 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
3613675 GTTGCCTTAG
*
3613685 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCACTCTAA
3613711 GCATACGGAGTTCA-TTCCAACTCTAA
1 GCATACGGAGTTCATTTCC-ACTCTAA
3613737 G
1 G
3613738 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCACTCTAA
Found at i:3614619 original size:26 final size:26
Alignment explanation
Indices: 3614583--3614635 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3614573 GTTGACTTAG
*
3614583 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
3614609 GCATATGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3614635 G
1 G
3614636 ATCGGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3615511 original size:26 final size:26
Alignment explanation
Indices: 3615475--3615527 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3615465 GTTGACTTAG
*
3615475 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
3615501 GCATATGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3615527 G
1 G
3615528 ATCGGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3617577 original size:19 final size:19
Alignment explanation
Indices: 3617553--3617596 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
3617543 AAAGTGTCTA
3617553 AAATGGGGACACCTTTTTC
1 AAATGGGGACACCTTTTTC
3617572 AAATGGGGACACCTTTTTC
1 AAATGGGGACACCTTTTTC
3617591 AAATGG
1 AAATGG
3617597 TCACAAAGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (19 bp):
AAATGGGGACACCTTTTTC
Found at i:3619056 original size:26 final size:26
Alignment explanation
Indices: 3619020--3619072 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3619010 GTTAACTTAG
3619020 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
3619046 GCATATGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3619072 G
1 G
3619073 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3623394 original size:26 final size:26
Alignment explanation
Indices: 3623354--3623406 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3623344 GTTAACATAG
*
3623354 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
* *
3623380 GCATACGGAGCTCATTCCTAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
3623406 G
1 G
3623407 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:3625403 original size:58 final size:59
Alignment explanation
Indices: 3625341--3625464 Score: 160
Period size: 59 Copynumber: 2.1 Consensus size: 59
3625331 ATCCCTTTTT
* * * *
3625341 TTTTTTTGAAAATTT-ATTTTTAAGGAAAATGGATACTTTCAACTTTTTCCTAAAAATA
1 TTTTTTTGAAAATTTGATTTTCAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAAAA
** * * *
3625399 TTTTTCAGAAATTTTGATTTTCAAGGAAGATTGATACTTTCAACTTTTCCCCAAAAAAA
1 TTTTTTTGAAAATTTGATTTTCAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAAAA
3625458 TTTTTTT
1 TTTTTTT
3625465 TGGAACTTTT
Statistics
Matches: 54, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
58 12 0.22
59 42 0.78
ACGTcount: A:0.34, C:0.11, G:0.09, T:0.46
Consensus pattern (59 bp):
TTTTTTTGAAAATTTGATTTTCAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAAAA
Found at i:3625462 original size:122 final size:121
Alignment explanation
Indices: 3625242--3625465 Score: 326
Period size: 122 Copynumber: 1.8 Consensus size: 121
3625232 TCTTGTGTAG
* ** *
3625242 GGAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTGGAAATTTATTTTTAAGGAAAATT
1 GGAAAATGGATACTTTCAACTTTTCCTTAAAAATATTTTTCAGAAATTTATTTTCAAGGAAAATT
* **
3625307 GATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTTTTTTTGAAAATTTATTTTTAA
66 GATACTTTCAACTTTTCCCCAAAAA-CAATTTTTTTTTTTTGAAAATTTATTTTTAA
*
3625364 GGAAAATGGATACTTTCAACTTTTTCC-TAAAAATATTTTTCAGAAATTTTGATTTTCAAGGAAG
1 GGAAAATGGATACTTTCAAC-TTTTCCTTAAAAATATTTTTCAGAAA-TTT-ATTTTCAAGGAAA
3625428 ATTGATACTTTCAACTTTTCCCCAAAAA-AATTTTTTTT
63 ATTGATACTTTCAACTTTTCCCCAAAAACAATTTTTTTT
3625466 GGAACTTTTG
Statistics
Matches: 91, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
122 44 0.48
123 9 0.10
124 38 0.42
ACGTcount: A:0.33, C:0.12, G:0.08, T:0.46
Consensus pattern (121 bp):
GGAAAATGGATACTTTCAACTTTTCCTTAAAAATATTTTTCAGAAATTTATTTTCAAGGAAAATT
GATACTTTCAACTTTTCCCCAAAAACAATTTTTTTTTTTTGAAAATTTATTTTTAA
Found at i:3625522 original size:16 final size:15
Alignment explanation
Indices: 3625502--3625564 Score: 63
Period size: 16 Copynumber: 3.9 Consensus size: 15
3625492 AATAGAATAA
3625502 TAAAAAAAATAAAAG
1 TAAAAAAAATAAAAG
* *
3625517 TGAAAATAAATAAAAA
1 T-AAAAAAAATAAAAG
*
3625533 TAAAAATAAAGAAAAG
1 TAAAAA-AAATAAAAG
3625549 TAAAACAAAAATAAAA
1 T-AAA-AAAAATAAAA
3625565 ATAAGATAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
15 5 0.13
16 21 0.55
17 10 0.26
18 2 0.05
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (15 bp):
TAAAAAAAATAAAAG
Found at i:3625533 original size:6 final size:6
Alignment explanation
Indices: 3625497--3625582 Score: 54
Period size: 6 Copynumber: 14.3 Consensus size: 6
3625487 AAGAAAATAG
* *
3625497 AATAATA AA-AAA AATAAA AGTGAA AAT--A AATAAA AATAAA AATAAA
1 AATAA-A AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
* * * *
3625543 GAAAAGTAA AACAAA AATAAA AAT-AA GATAAA GATAAA AA
1 -AATA--AA AATAAA AATAAA AATAAA AATAAA AATAAA AA
3625583 AATATTAAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
4 4 0.06
5 7 0.11
6 43 0.67
7 5 0.08
8 3 0.05
9 2 0.03
ACGTcount: A:0.77, C:0.01, G:0.07, T:0.15
Consensus pattern (6 bp):
AATAAA
Found at i:3625558 original size:27 final size:28
Alignment explanation
Indices: 3625528--3625581 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
3625518 GAAAATAAAT
3625528 AAAAATAAAAATAAAGA-AAAG-TAAAAC
1 AAAAATAAAAAT-AAGATAAAGATAAAAC
3625555 AAAAATAAAAATAAGATAAAGATAAAA
1 AAAAATAAAAATAAGATAAAGATAAAA
3625582 AAATATTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 4 0.16
27 16 0.64
28 5 0.20
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.13
Consensus pattern (28 bp):
AAAAATAAAAATAAGATAAAGATAAAAC
Found at i:3625573 original size:11 final size:11
Alignment explanation
Indices: 3625506--3625656 Score: 73
Period size: 11 Copynumber: 13.5 Consensus size: 11
3625496 GAATAATAAA
3625506 AAAAATAAAAGT
1 AAAAATAAAA-T
*
3625518 GAAAAT-AAAT
1 AAAAATAAAAT
3625528 AAAAATAAAAAT
1 AAAAAT-AAAAT
* *
3625540 AAAGA-AAAGT
1 AAAAATAAAAT
3625550 AAAACA-AAAAT
1 AAAA-ATAAAAT
*
3625561 AAAAATAAGAT
1 AAAAATAAAAT
*
3625572 AAAGATAAAA-
1 AAAAATAAAAT
* *
3625582 AAATATTAAAT
1 AAAAATAAAAT
*
3625593 AAAACCTAATCTAAT
1 AAAA-ATAA---AAT
*
3625608 AAATATAAAA-
1 AAAAATAAAAT
*
3625618 ACAAATAAAAT
1 AAAAATAAAAT
3625629 AAAAA-ATAAAT
1 AAAAATA-AAAT
3625640 AAAGAA-ATAAAT
1 AAA-AATA-AAAT
3625652 AAAAA
1 AAAAA
3625657 AAACCTGAAG
Statistics
Matches: 108, Mismatches: 19, Indels: 25
0.71 0.12 0.16
Matches are distributed among these distances:
10 31 0.29
11 42 0.39
12 26 0.24
14 3 0.03
15 6 0.06
ACGTcount: A:0.74, C:0.03, G:0.05, T:0.18
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:3625612 original size:4 final size:4
Alignment explanation
Indices: 3625605--3625654 Score: 50
Period size: 4 Copynumber: 12.5 Consensus size: 4
3625595 AACCTAATCT
* *
3625605 AATA AATA TAA-A AACA AATAA AATA AA-A AATA AATA AAGA AATA AATA
1 AATA AATA -AATA AATA AAT-A AATA AATA AATA AATA AATA AATA AATA
3625653 AA
1 AA
3625655 AAAAACCTGA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
3 5 0.13
4 28 0.72
5 6 0.15
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.18
Consensus pattern (4 bp):
AATA
Found at i:3625635 original size:12 final size:12
Alignment explanation
Indices: 3625505--3625657 Score: 61
Period size: 12 Copynumber: 12.5 Consensus size: 12
3625495 AGAATAATAA
3625505 AAAAAATAAAAGT
1 AAAAAATAAAA-T
*
3625518 -GAAAAT-AAAT
1 AAAAAATAAAAT
3625528 -AAAAATAAAAAT
1 AAAAAAT-AAAAT
3625540 AAAGAAAAGTAAAA-
1 -AA-AAAA-TAAAAT
*
3625554 CAAAAATAAAA-
1 AAAAAATAAAAT
* *
3625565 ATAAGATAAAGAT
1 AAAAAATAAA-AT
3625578 AAAAAAATATTAAAT
1 -AAAAAATA--AAAT
** **
3625593 AAAACCTAATCT
1 AAAAAATAAAAT
*
3625605 AATAAATATAAA-
1 AAAAAATA-AAAT
*
3625617 AACAAATAAAAT
1 AAAAAATAAAAT
3625629 AAAAAAT-AAAT
1 AAAAAATAAAAT
3625640 AAAGAAAT-AAAT
1 AAA-AAATAAAAT
3625652 AAAAAA
1 AAAAAA
3625658 AACCTGAAGC
Statistics
Matches: 107, Mismatches: 19, Indels: 30
0.69 0.12 0.19
Matches are distributed among these distances:
10 6 0.06
11 28 0.26
12 45 0.42
13 2 0.02
14 13 0.12
15 10 0.09
16 3 0.03
ACGTcount: A:0.75, C:0.03, G:0.05, T:0.18
Consensus pattern (12 bp):
AAAAAATAAAAT
Found at i:3626576 original size:4 final size:4
Alignment explanation
Indices: 3626548--3626636 Score: 55
Period size: 4 Copynumber: 23.0 Consensus size: 4
3626538 TAATAATAAT
* *
3626548 AATA TATA ATTA AATA AGTATA AATA AATA AATA AATA AA-A CAA-A AAT-
1 AATA AATA AATA AATA A--ATA AATA AATA AATA AATA AATA -AATA AATA
* * * *
3626596 AATA AATA TATA TAT- TATG AAT- AATA AATA AAT- AATA AATA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA
3626637 CATAGGATAT
Statistics
Matches: 71, Mismatches: 6, Indels: 16
0.76 0.06 0.17
Matches are distributed among these distances:
3 15 0.21
4 52 0.73
6 4 0.06
ACGTcount: A:0.66, C:0.01, G:0.02, T:0.30
Consensus pattern (4 bp):
AATA
Found at i:3626599 original size:22 final size:22
Alignment explanation
Indices: 3626569--3626630 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
3626559 AAATAAGTAT
3626569 AAATAAATAAATAAATAAAACAA
1 AAAT-AATAAATAAATAAAACAA
* * ** *
3626592 AAATAATAAATATATATATTAT
1 AAATAATAAATAAATAAAACAA
*
3626614 GAATAATAAATAAATAA
1 AAATAATAAATAAATAA
3626631 TAAATACATA
Statistics
Matches: 31, Mismatches: 8, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
22 27 0.87
23 4 0.13
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (22 bp):
AAATAATAAATAAATAAAACAA
Found at i:3626678 original size:12 final size:12
Alignment explanation
Indices: 3626649--3626677 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
3626639 TAGGATATAC
3626649 ATAAAATACAAA
1 ATAAAATACAAA
3626661 ATAAAATA-AAA
1 ATAAAATACAAA
3626672 ATAAAA
1 ATAAAA
3626678 AGAAACGACA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 9 0.53
12 8 0.47
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.17
Consensus pattern (12 bp):
ATAAAATACAAA
Found at i:3626948 original size:10 final size:10
Alignment explanation
Indices: 3626934--3626979 Score: 62
Period size: 10 Copynumber: 4.8 Consensus size: 10
3626924 ATAGAGGTAA
3626934 TTTTTTTT-C
1 TTTTTTTTGC
3626943 ATTTTTTTTGC
1 -TTTTTTTTGC
3626954 TTTTTTTT--
1 TTTTTTTTGC
3626962 TTTTTTTTGC
1 TTTTTTTTGC
3626972 TTTTTTTT
1 TTTTTTTT
3626980 TTTTAATTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
8 8 0.24
10 24 0.73
11 1 0.03
ACGTcount: A:0.02, C:0.07, G:0.04, T:0.87
Consensus pattern (10 bp):
TTTTTTTTGC
Found at i:3626950 original size:11 final size:10
Alignment explanation
Indices: 3626934--3626980 Score: 53
Period size: 9 Copynumber: 4.8 Consensus size: 10
3626924 ATAGAGGTAA
3626934 TTTTTTTTCAT
1 TTTTTTTTC-T
*
3626945 TTTTTTTGC-
1 TTTTTTTTCT
3626954 TTTTTTTT-T
1 TTTTTTTTCT
*
3626963 TTTTTTTGCT
1 TTTTTTTTCT
3626973 TTTTTTTT
1 TTTTTTTT
3626981 TTTAATTGAT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
9 14 0.47
10 8 0.27
11 8 0.27
ACGTcount: A:0.02, C:0.06, G:0.04, T:0.87
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:3626978 original size:18 final size:18
Alignment explanation
Indices: 3626934--3626983 Score: 82
Period size: 18 Copynumber: 2.7 Consensus size: 18
3626924 ATAGAGGTAA
3626934 TTTTTTTTCATTTTTTTTGC
1 TTTTTTTT--TTTTTTTTGC
3626954 TTTTTTTTTTTTTTTTGC
1 TTTTTTTTTTTTTTTTGC
3626972 TTTTTTTTTTTT
1 TTTTTTTTTTTT
3626984 AATTGATCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
18 22 0.73
20 8 0.27
ACGTcount: A:0.02, C:0.06, G:0.04, T:0.88
Consensus pattern (18 bp):
TTTTTTTTTTTTTTTTGC
Found at i:3626979 original size:19 final size:19
Alignment explanation
Indices: 3626934--3626983 Score: 75
Period size: 19 Copynumber: 2.6 Consensus size: 19
3626924 ATAGAGGTAA
*
3626934 TTTTTTTTCATTTTTTTTGC
1 TTTTTTTT-TTTTTTTTTGC
3626954 -TTTTTTTTTTTTTTTTGC
1 TTTTTTTTTTTTTTTTTGC
3626972 TTTTTTTTTTTT
1 TTTTTTTTTTTT
3626984 AATTGATCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 10 0.36
19 18 0.64
ACGTcount: A:0.02, C:0.06, G:0.04, T:0.88
Consensus pattern (19 bp):
TTTTTTTTTTTTTTTTTGC
Found at i:3627133 original size:101 final size:103
Alignment explanation
Indices: 3626956--3627189 Score: 355
Period size: 101 Copynumber: 2.2 Consensus size: 103
3626946 TTTTTTGCTT
* * *
3626956 TTTTTTTTTTTTTTGCTTTTTTTTTTTTAATTGATCAAAGCTCCTCTAAGCAGAGGTTCAATGAC
1 TTTTTTTTTTTTTT--TTTTTTTTTTTAAAATGATCAAAGCTCCTCTAAGCAGAGGCTCAATGAC
3627021 TTTGAGAAACATAAACAAAGCTCCTCTAAATAGAGGC-A-
64 TTTGAGAAACATAAACAAAGCTCCTCTAAATAGAGGCAAC
*
3627059 TTTTTTTTTGTTTTTTTTTTTTTTTAAAATGATCAAAGCTCCTCTAAGCAGAGGCTCAATGACTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTAAAATGATCAAAGCTCCTCTAAGCAGAGGCTCAATGACTT
**
3627124 TGAGAAACATAAATGAAGCTCCTCTAAATAGAGGCAAC
66 TGAGAAACATAAACAAAGCTCCTCTAAATAGAGGCAAC
3627162 TTTTTGTTTTTTTTTTTCTATTTTTTTT
1 TTTTT-TTTTTTTTTTT-T-TTTTTTTT
3627190 TGTTTTTTTT
Statistics
Matches: 119, Mismatches: 7, Indels: 7
0.89 0.05 0.05
Matches are distributed among these distances:
101 81 0.68
102 1 0.01
103 18 0.15
104 10 0.08
105 1 0.01
106 8 0.07
ACGTcount: A:0.27, C:0.14, G:0.13, T:0.46
Consensus pattern (103 bp):
TTTTTTTTTTTTTTTTTTTTTTTTTAAAATGATCAAAGCTCCTCTAAGCAGAGGCTCAATGACTT
TGAGAAACATAAACAAAGCTCCTCTAAATAGAGGCAAC
Found at i:3627333 original size:42 final size:42
Alignment explanation
Indices: 3627203--3627516 Score: 417
Period size: 41 Copynumber: 7.5 Consensus size: 42
3627193 TTTTTTTAAA
* *
3627203 GCTCCTCTAAACAGAGGCTCGACGACTTTGG-AAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
*
3627244 GCTCCTCTAAACAGAGGCACCACGACTTT-AAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
*
3627285 GCTCCTCTAAACAGAGGCACCATGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
*
3627327 GCTCCTCTAAACAAAGGCACCACGACTTTGG-AAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
*
3627368 GCCTCCTCTAAACAGAGGCACCACAACTTTGGAAAAGTAAAATT
1 G-CTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGT-AAATT
* * *
3627412 GCACCTTTAAACA-AGGCACCACAACTTT-GAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGA-AAAGTAAATT
* * * **
3627453 ACTCCTCTAAAATAGAGGCACCAC--TTTTTAAAAAGTAAATT
1 GCTCCTCT-AAACAGAGGCACCACGACTTTGGAAAAGTAAATT
3627494 GCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCAC
3627517 AACGTTCCCC
Statistics
Matches: 245, Mismatches: 19, Indels: 19
0.87 0.07 0.07
Matches are distributed among these distances:
40 14 0.06
41 108 0.44
42 93 0.38
43 24 0.10
44 6 0.02
ACGTcount: A:0.37, C:0.24, G:0.16, T:0.23
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
Found at i:3627346 original size:83 final size:83
Alignment explanation
Indices: 3627203--3627516 Score: 420
Period size: 83 Copynumber: 3.8 Consensus size: 83
3627193 TTTTTTTAAA
* * *
3627203 GCTCCTCTAAACAGAGGCTCGACGACTTTGG-AAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAAAGGCACCAC
*
3627267 GACTTTAAAAAGTAAATT
66 GACTTTAGAAAGTAAATT
*
3627285 GCTCCTCTAAACAGAGGCACCATGACTTTGGAAAAGTAAATTGCTCCTCTAAACAAAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAAAGGCACCAC
*
3627350 GACTTTGGAAAGTAAATT
66 GACTTTAGAAAGTAAATT
* * *
3627368 GCCTCCTCTAAACAGAGGCACCACAACTTTGGAAAAGTAAAATTGCACCTTTAAAC-AAGGCACC
1 G-CTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGT-AAATTGCTCCTCTAAACAAAGGCACC
*
3627432 ACAACTTTGAGAAAGTAAATT
64 ACGACTTT-AGAAAGTAAATT
* * * ** *
3627453 ACTCCTCTAAAATAGAGGCACCAC--TTTTTAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCA
1 GCTCCTCT-AAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAAAGGCACCA
3627516 C
65 C
3627517 AACGTTCCCC
Statistics
Matches: 206, Mismatches: 20, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
82 43 0.21
83 67 0.33
84 56 0.27
85 40 0.19
ACGTcount: A:0.37, C:0.24, G:0.16, T:0.23
Consensus pattern (83 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAAAGGCACCAC
GACTTTAGAAAGTAAATT
Found at i:3627586 original size:70 final size:69
Alignment explanation
Indices: 3627456--3627655 Score: 312
Period size: 70 Copynumber: 2.9 Consensus size: 69
3627446 GTAAATTACT
** **
3627456 CCTCTAAAATAGAGGCACCAC-TTTTTAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACAAC
1 CCTCT-AAATAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACAAC
3627520 GTTCC
65 GTTCC
*
3627525 CCTCTAAATAGAGGCACCACGACTTTGGAAAGTAAATTGCTTCCTCTAAACAGAGGCACCACGAC
1 CCTCTAAATAGAGGCACCACGACTTTGGAAAGTAAATTGC-TCCTCTAAACAGAGGCACCACAAC
*
3627590 TTTCC
65 GTTCC
*
3627595 CCTCTAAATAGAGTCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 CCTCTAAATAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
3627656 GACTTTTGAA
Statistics
Matches: 122, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
68 15 0.12
69 41 0.34
70 66 0.54
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (69 bp):
CCTCTAAATAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACAACG
TTCC
Found at i:3627607 original size:28 final size:28
Alignment explanation
Indices: 3627567--3627620 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
3627557 TAAATTGCTT
3627567 CCTCTAAACAGAGGCACCACGACTTTCC
1 CCTCTAAACAGAGGCACCACGACTTTCC
* *
3627595 CCTCTAAATAGAGTCACCACGACTTT
1 CCTCTAAACAGAGGCACCACGACTTT
3627621 GGAAAGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.30, C:0.35, G:0.13, T:0.22
Consensus pattern (28 bp):
CCTCTAAACAGAGGCACCACGACTTTCC
Found at i:3627640 original size:41 final size:41
Alignment explanation
Indices: 3627595--3627679 Score: 143
Period size: 41 Copynumber: 2.1 Consensus size: 41
3627585 ACGACTTTCC
* *
3627595 CCTCTAAATAGAGTCACCACGACTTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCT
*
3627636 CCTCTAAACAGAGGCACCACGACTTTTGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCT
3627677 CCT
1 CCT
3627680 GACATCATGT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (41 bp):
CCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCT
Found at i:3628012 original size:43 final size:42
Alignment explanation
Indices: 3627877--3628012 Score: 125
Period size: 43 Copynumber: 3.2 Consensus size: 42
3627867 TGAAAGATCC
*** * *
3627877 TCATTTGAATTTTGGAGGCTCACATCCAAAAGTTAAAGGTTCT
1 TCATTTGAATTTTGGAAATTCACATCCAAAAATTAAAGCTT-T
** * *
3627920 T-ATTTGGCAAACTTGG-AATTCATATCCAAAATCTTAAAGC-TT
1 TCATTT-G-AATTTTGGAAATTCACATCCAAAA-ATTAAAGCTTT
3627962 TCATTTGAATTTTGGAAATTCACATCCAAAAATTCAAAGCTTT
1 TCATTTGAATTTTGGAAATTCACATCCAAAAATT-AAAGCTTT
3628005 TCATTTGA
1 TCATTTGA
3628013 GTTCAAAGGC
Statistics
Matches: 74, Mismatches: 12, Indels: 14
0.74 0.12 0.14
Matches are distributed among these distances:
41 8 0.11
42 26 0.35
43 28 0.38
44 12 0.16
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37
Consensus pattern (42 bp):
TCATTTGAATTTTGGAAATTCACATCCAAAAATTAAAGCTTT
Found at i:3628240 original size:22 final size:22
Alignment explanation
Indices: 3628193--3628250 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
3628183 GGTTTCACTC
3628193 CTCAAAGATT-TCATTTTGAAAT
1 CTCAAAGATTCTCA-TTTGAAAT
**
3628215 -TCAAAGATTCTCATTTGAGTT
1 CTCAAAGATTCTCATTTGAAAT
*
3628236 CTCAAAAATTCTCAT
1 CTCAAAGATTCTCAT
3628251 CAAAACATTC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
21 15 0.48
22 16 0.52
ACGTcount: A:0.34, C:0.17, G:0.09, T:0.40
Consensus pattern (22 bp):
CTCAAAGATTCTCATTTGAAAT
Found at i:3630726 original size:26 final size:26
Alignment explanation
Indices: 3630688--3630740 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3630678 CCAGTCTGAT
* *
3630688 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3630714 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3630740 C
1 C
3630741 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:3631627 original size:26 final size:26
Alignment explanation
Indices: 3631591--3631643 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3631581 CCGGTTCAAT
*
3631591 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3631617 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3631643 C
1 C
3631644 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3631761 original size:903 final size:901
Alignment explanation
Indices: 3629814--3636990 Score: 7881
Period size: 867 Copynumber: 8.0 Consensus size: 901
3629804 CCGATCCGAT
*
3629814 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTAC-GAGAGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAG-GCGCTCAG
* * * * *
3629878 CCGGCCAAAGGGGTGGGATGTGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACT-TTC-GCCGAT
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT-GTGTGCTGCCGAT
* * * *
3629941 CTTGCTG-CACAACCCTCAGTCCGGTCTAGTCTTAGATTGGGAATGAACTCCGTATGCCTAAGCC
129 CCTGCTGCCACAACCCTCGGTCTGGTCTAGTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
3630005 AACTGACGAAACGAGCGAGCGGGCGAGCGCGCGTGCACTACGTCGGCCAGAGAGACAAGATGCGC
194 AACCGACGAAACGAGCGGGCGGGCG-G-GCGCGTGCACTACGCCGGCCAGAGAGACAGGATGCGC
* * *
3630070 AAGCCGTGGATCAATAGGCTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATCTGCCAATGC
257 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGC
* * * * *
3630135 CATTTCTATGGGTTGTAAATTCATACAATGGGTCCCTAAAGCCTTCACGTGACGTTTAAATGGCA
322 CATTTTTATGGCTTGTAAATTCATACAAT-GGTCCCTTAAGCCTTCACGTGAAGTTT-CATGGCA
* * *
3630200 AGACGACTCGCTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCAGTTCGGGATGCTTTTAAAA
385 AGACGACTCG-TTTTCTATTTTTCACGATTTTCAAAACTTTTTACAGTTCGGGAT-TTTTTAAAA
* **
3630265 TTTTTTCGG-AGGAGTTTT-GCCCCAAAACCTT-GTAGATGTGATTCCTTGTATTTTTTTTCACA
448 TTTTTTCGGAAGGAGTTTTGGCCCC-AAA-CTTGGTAGACGTGA-TCCTTGTATTTTTTTTGGCA
* * *
3630327 TCCATAAAAAAATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAGAAAAAGTG
510 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA-AAAAAGTG
* * *
3630392 TCCCCATTTCAGACACTTTAAATGGCTACTGGCAAC-AACCTGTAAAATATGC-AGTGCTCTTTC
574 TCCCCATTTCAGACACTTT-AATGGCTACTGGCAGCAAACCTGTAAAATCT-CAAATGCTCTTT-
* *
3630455 AAGTG-GGTGTAAGTTCTCGAGGTTTGATGCAGGGATTTAGGGGGCC-ATATAAAGGGCCAAGAT
636 AAG-GAAGTGTGAGTTCTCGAGGTTTGATG-AGGGA--TAGGGGGCCAATAT-AAGGGCCAAG-T
* * * * *
3630518 ACCCAGCACCAATCGCACATCGATGTG-ACAA-CCCCCCGGCCCCCCCGATCGTCGAAACGCCAA
695 A-CCAGCACCCATCGCACATC-ATGTGCACAACCCCCCCGGCCCCCCCAATCGCCGGAACCCCAA
* * ** **
3630581 CGCCGTCTGTCAGG---T-------T-CTCCGACGATGGTGCCCCGGTGAAGAAAAATATGGCAC
758 TGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCAC
* * * * * * *
3630635 TAGCACTTCCCCGA-CCCTGGCATGTGCTGTCGCAACCTTCGATCCAGTCTGATCTTAGATTGGG
823 CAGCACATGCCCGAGCCC-AGCATGTGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGG
3630699 AATGAACTCCGTATG
887 AATGAACTCCGTATG
* * * * *
3630714 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAATGAGCGTACGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAGC
* * * *
3630779 CGGCCAGAGGGGCGGGATGTGCAAGCCGCGGATCGGTCGGGTCCCCCTCTGTGTGCTGTCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCC
* * *
3630844 TGCTGCCGCAACCCTCGGTCTGGTCTAGTCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGGTCTGGTCTAGTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
3630909 CTGACGAAACGAGCGGGCGGGCGGGCGCCCGTGCACTACGCCGGCCAGAGAGATAGGATGCGCAA
196 CCGACGAAACGAGCGGGCGGGCGGGCG--CGTGCACTACGCCGGCCAGAGAGACAGGATGCGCAA
** *
3630974 GCCGTGGATTAATAGGCTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
* * *
3631039 TTTTTATGGGTTGTAAATTCATACATTGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
3631104 GACTAGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTT
389 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTT
* * * *
3631169 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTCGCATCCATAAAA
454 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* *
3631234 AAATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTC
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * * ** *
3631299 AAACACTTTAATGGCTACTGGCAACAAACCTGTAAAATATCAAGTGCTCTTTAAGGGGGTGTAAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAAGTGTGAG
* * *
3631364 TTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCACGTACCAGCACCAATCGCACAT
649 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
3631429 CATGTGCATAACCCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCG
714 CATGTGCACAACCCCCCCGGCCCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* ** * * *
3631494 ACGATACTCCGACGATGGTGCCCCGTTGAAGAAAAATGCAGCACTAGCACATGCCCGAGCCCAGA
779 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
3631559 ATGTGCTGCCGCAACCCTCGGTCCGGT-TCAATCTTAGACTGGGAATGAACTCCTTATG
844 ATGTGCTGTCGCAACCCTCGATCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATG
* *
3631617 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTATAGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAGC
* * * * ** *
3631682 CGGGCAGAGGGGTGGGATGTGCAAGCCGGGGATTGGTCGGGTCCCCCTCTGCATGCTGCCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCC
** *
3631747 TGCTGCTGCAACCCTCGGTCTGGTCTAGTCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGGTCTGGTCTAGTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
3631812 CCGACAAAATGAGCGGGTGGGCGGGCGCACGTGCACTACGCCGGCCAGAGAGACAGGATGCGCAA
196 CCGACGAAACGAGCGGGCGGGCGGGCG--CGTGCACTACGCCGGCCAGAGAGACAGGATGCGCAA
* * *
3631877 GTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATTTTTCTACGTGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
* *
3631942 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTGAAGGCTTCACGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
3632007 GACTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTT
389 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTT
* * *
3632072 CGGAAGGAGTTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTCGGCATGCACAAAA
454 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* * *
3632137 ACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGT-CCCATTTC
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
3632201 ACACACATTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTTTTTAAGGAAGTGTGAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAAGTGTGAG
* * *
3632266 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCACACAT
649 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
3632331 CATGTGCGCACACCCCCTCCGGCCCCCCCAATCTCCGGAACCCTAATGCCG-C---C---TT-T-
714 CATGTGCACA-ACCCCC-CCGGCCCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * * *
3632387 C-A-GGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACGAGCACATGCCCGAGCCTA
777 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* *
3632450 GCATGTGCTGCCGTAA----C---CC--TC-GA---T---CT--G---G---TCCG-AT-
842 GCATGTGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
3632484 CTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGCGCTTAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAGC
* * * * * ** *
3632549 CGGCCAGAGGGGTGGGATGCACAAGACGGGGATTGGTCGGGTCCCCCTCCGCATGCTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCC
* * ** ** * * * *
3632614 TACTGCCGCAACCCTTTGTCTAATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCGA
131 TGCTGCCACAACCCTCGGTCTGGTCTAGTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
3632679 CTGATGAAACGAGCGGGCGGACGGGCGCGCGGGCACTACGTCGGCCAGAGAGATAGGATGCGCAA
196 CCGACGAAACGAGCGGGCGGGC-GG-GCGCGTGCACTACGCCGGCCAGAGAGACAGGATGCGCAA
* *
3632744 GCCGTGGATTGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
* * * *
3632809 TTTTTATGGCTTGTAAATTCATACAACGATCCCTTAAGCCTTCACATGAAGTTTCAAGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** * *
3632874 GACTCGTTTGCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
389 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTT
* * * *
3632939 CAGAAGGTGTTTTGGCCCCAAACTTGGTAGATGGGATCCTTGTATTTTTTTTGGCATGCACAAAA
454 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* * *
3633004 ATATTTAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTC
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
3633068 AGACACCTTAATGGCTACTGGCAGCAAACCTATAAAATCTTAAATGCTCTTTAAGGAAGTGTGAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAAGTGTGAG
* **
3633133 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTGAAGTACCAGCACCCATCGCACAT
649 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *** *
3633198 CATGTGCGCACACCCCCCCGG-CACCCCAATCATTGGAACCCAAATGCCG-CTGGTCAGGTTCTC
714 CATGTGCACA-ACCCCCCCGGCCCCCCCAATCGCCGGAACCCCAATGCCGTC-GGTCAGGTTCTC
**
3633261 C-AGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
777 CGA-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * * *
3633325 AGCATGTGCTGCCGCAACACTTGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
841 AGCATGTGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
3633386 CTTAGACTAGGAACGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAGC
* * ** *
3633451 CGGCCAGAGGGGCGGGATGCGCAAGCAGGGGATCGG-CTGGGTCCCCTTCTGTGTGCTATCGGTC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGTGTGCTGCCGATC
* * ** * * * *
3633515 CTACTACCGTAACCCTCGAT-TCGATCT-GATCTGAGACTGGGAATGAACTCCGTATGTCTAAGC
130 CTGCTGCCACAACCCTCGGTCT-GGTCTAG-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * *
3633578 CAACCGATGAAACGA----GCGGGC-GG-GC-T---TTTCGTCGGCTAGAGAGAC-GGAATGCGT
193 CAACCGACGAAACGAGCGGGCGGGCGGGCGCGTGCACTACGCCGGCCAGAGAGACAGG-ATGCGC
* * * * * **
3633632 AGGCCGTGGATTGATAGGGTGGTTGGTGGGTTTAGGCACATGTTTATATTTCTGCGTGCCAATGC
257 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGC
* * *
3633697 CATTTTTATGGCTTGTAAATTCATAAAATGTTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAG
322 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
3633762 ACGACTCGTTTTCTATTTTTCATGATTTTCCAAACTTTTTGCAGTTCGGGATTTTTTAAATTTTT
387 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACAGTTCGGGATTTTTTAAAATTTT
* *
3633827 TTCGGAAGGAGTTTT-TCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
452 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
** * * *
3633891 AAAAGGTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAATGTCCCCATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
3633956 TCAGACACTTTAATGGCTACTGGCAGCAAAGCTATAAAATCTCAAATGCTCTTTAAGGAAGTGCG
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAAGTGTG
* * * * *
3634021 AGTTCACGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCATGTACTAGCACCCATCGCAT
647 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
3634086 ATCATGTACGCAC-A-CTCCCAGGCCCCCCCGATCGTCGGAACCCCAATGCCGTTGGTCAAGAGT
712 ATCATGT--GCACAACCCCCCCGGCCCCCCCAATCGCCGGAACCCCAATGCCGTCGGTC-AG-GT
* * * *
3634149 TCTCCGGC-ATGCTCCTGA--ATGGTGCCCGGTA-GAA-AATAAA--AGGCACCCGCA-ATG-CC
773 TCTCCGACGATGCTCC-GACGATGGTGCCCCG-ACGAAGAA-AAATGCGGCACCAGCACATGCCC
** ** *
3634205 GAG--CAGCACT-TGCTG-CGCAACCCCTCGAT-CTATACCAAATCTTAGACTAGGCAAATGAAC
835 GAGCCCAGCA-TGTGCTGTCGCAA-CCCTCGATCCGGT--CTGATCTTAGACT-GG-GAATGAAC
3634265 TCCAGTACCT-
894 TCC-GTA--TG
* * **
3634275 CTTAAGACTGGCGAATGGAACT-CGCTAATACCTATAGTCACACCC-CAGAATC-AGAATAATGC
1 CTT-AGACTGG-GAAT-GAACTCCG-T-ATGCCTA-AGTCA-ACCCAC-GAAACGAGCGT-A--C
* * * * *
3634337 AGGCCGCTCAGTC-G-CAGAGGGGCGGGATGTGCAAG-CGGAGATCGG-C-AG-CTCCCTCTGTG
55 AGG-CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTG
** * * * * *
3634396 TGCTATCAATCC--CTGCTACATAACCTCGGTTTGGTCT-GATCTAAGAAACTGGGAATCGAAAC
119 TGCTGCCGATCCTGCTGCCACA-ACCCTCGGTCTGGTCTAG-TCTTAG--ACTGGGAAT-G-AAC
* * * * * *
3634458 TCCGTATGTCTAAGCCAACCGATGAAAGCGAGCGGAACGAGCGGGCAGGGT-CACTAACAACCGG
178 TCCGTATGCCTAAGCCAACCGACGAAA-CGAGCGG-GCGGGCGGGC-GCGTGCACT-AC-GCCGG
* * * * *
3634522 CCAAGAGAGACGGGATGCGTAAGCCGTAGACTTGATAGGGTGGTTGGTGGGTTTAGGCACATCTT
238 CC-AGAGAGACAGGATGCGCAAGCCGTGGA-TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* ** * * *
3634587 TATATTTCTACATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGTTCCCTTAAGCATT
301 CATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * *
3634652 CACATGAAGTTTGAAGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCCAAACTTTTTACAG
366 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACAG
* *
3634717 TTTGGGATTTTTTAAATTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
431 TTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * * *
3634782 TATTTTTTTTGGAATGCACAAAAAAAGTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGGCCA
496 TATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * ** *
3634847 TTTGAAAAAAAAAAT-TTCTTATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
561 TTTG---AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* ** * * *
3634911 TTAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGAGATAAGGGGCCAATATAAGG
623 TCAAATGCTCTTTAAGGAAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * *
3634976 GCCAAGTACCAGCACCCATCGCACATCATGTGCGC-ACACCCCTC-GCCCCTCCAATCGTCGGAA
688 GCCAAGTACCAGCACCCATCGCACATCATGTGCACAAC-CCCCCCGGCCCCCCCAATCGCCGGAA
* * ** * *
3635039 CCCCAATGCCGCCTGTCAGGTTCTCCGGTGATGCTCCGGCTATGGTGCCCCGACGAAGAAAAATG
752 CCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG
* * *
3635104 CAGCACCAGCACATGCCCGAGCCCAGCATGTGTTGTCGTAACCCTCGATCCGGTACGATCTTAGA
817 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGATCC-G---G----T---
*
3635169 CTGGGAATGAACTTCATATGCTTAGACTGGGATTGAACTCCGTATG
871 C------TG--------AT-CTTAGACTGGGAATGAACTCCGTATG
* ** *** *
3635215 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACGGACGAAACGAGCGTGTGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAGC
* * * * * * *
3635280 CGGCCAGAGGGGCGGGATGCGCAACCCAGAGATTGATCGGGTCCCCCTCTATGTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCC
* ** * *
3635345 TGCTACCACAACCCTCGGTCCAGTCCAATCTTAGACT--G---G------GTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGGTCTGGTCTAGTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
3635399 CCGACGAAAC-A-------AGCGGGCG-G-GCACTACGCCGACCAGGGAGACAGGATACGCAAGC
196 CCGACGAAACGAGCGGGCGGGCGGGCGCGTGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGC
*
3635454 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATT
261 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATT
* *
3635519 TTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGGCGA
326 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * * * *
3635584 CTCATTTTCAATTTTTCACGATTTTCCAAACATTTTACGGTTTGGGATTTTTTAAAATTTTTTTG
391 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTCG
* * * * *
3635649 AAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTGTTTTGGCATGCATAAAAGA
456 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
* *
3635714 ATTCAGCTAAAAACGCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
521 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
**
3635779 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
586 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAAGTGTGAGTT
* *
3635844 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCA
651 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
** *
3635909 TCTGTGCAC-AGTCCCCCGGCCCCCCCAATTGCCGGAACCCCAATGCCGTCGGTCAGGTTCT-CG
716 --TGTGCACAACCCCCCCGGCCCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
** * * * * *
3635972 GTGAAGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGTCACCAGCACATGCTCGAGCCTAGC
779 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* *
3636037 ATGTGCTGTTGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
844 ATGTGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * *
3636095 CTTAGACTGGGACTGATCTCCGTGTGCCTAAGTTAACCCATGAAATC-AGCGTACA-ACGGTTTA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-CGAGCGTACAGGC-GCTCA
* * * * * * * * *
3636158 GTCAGCTAGAGGGGCGAGATGCACAAGCTGGGGATCGATCGGGTCCCCCTTTGTGTGCTACCGAT
64 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGAT
** *
3636223 CCTGCTATCACAACCCTCAGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
129 CCTGCTGCCACAACCCTCGGTCTGGTCTAG-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * *
3636287 CAACCAACAAAACGAACGGGCGGGAGGGCG-G-GCACTATGCCGGCCAGAGAGACGGGATGCGCA
193 CAACCGACGAAACGAGCGGGCGGGCGGGCGCGTGCACTACGCCGGCCAGAGAGACAGGATGCGCA
* * * * *
3636350 AGCTGTGGATCGATAGGGTGGAAGGTGGTTTTAGGCACATCTTTATATTTCTGTGTGCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCC
*
3636415 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** ** * *** *
3636480 TGACTCATTTTCTATTTTTCGTGATTTTTGAAAGTTTTTGTGGTTCAGGATTTTTTAAAATTTTT
388 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTT
* * ** * * * **
3636545 TGGGAAGGATTTTTCACCCCAAAATTGGTAGACATGATTCTTGTATTTTGGTTGGCATGCACAAA
453 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
*
3636610 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTC
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
3636675 CAGACCCTTTAATGGCTACTGGCAGCAAACTTATAAAATCTCAAATGCTTTTTAAGGAAGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAAGTGTGA
*
3636740 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGCCTAAGTACCAGCACCCATCGCAC
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC-AAGTACCAGCACCCATCGCAC
* * *
3636804 ATCATGTGTGCAC-A-CCCCCCGG-CCCCCCGATCACCGGAAGCCCAATG-C--CGGTCAGGTTC
712 ATCA--TGTGCACAACCCCCCCGGCCCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * ** *
3636863 TCTGACGATGCTCC-AGCTATGGTGCCCCAACGAAGAAAAATATGGCACTAGCACATGCCCGAGC
775 TCCGACGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* *
3636927 CCAGTATGTGCTGTCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
839 CCAGCATGTGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
3636990 C
1 C
3636991 CTAAGTCAGC
Statistics
Matches: 5411, Mismatches: 650, Indels: 437
0.83 0.10 0.07
Matches are distributed among these distances:
865 24 0.00
866 4 0.00
867 648 0.12
868 4 0.00
869 7 0.00
872 3 0.00
873 1 0.00
874 2 0.00
875 1 0.00
876 69 0.01
877 2 0.00
879 1 0.00
880 153 0.03
881 3 0.00
882 1 0.00
883 9 0.00
884 16 0.00
885 15 0.00
886 11 0.00
887 13 0.00
888 12 0.00
889 112 0.02
890 400 0.07
891 78 0.01
892 85 0.02
893 100 0.02
894 31 0.01
895 163 0.03
896 70 0.01
897 79 0.01
898 119 0.02
899 516 0.10
900 135 0.02
901 46 0.01
902 499 0.09
903 629 0.12
904 40 0.01
905 134 0.02
906 83 0.02
907 313 0.06
908 23 0.00
909 9 0.00
910 24 0.00
911 206 0.04
912 108 0.02
913 54 0.01
914 132 0.02
915 16 0.00
916 3 0.00
917 5 0.00
918 1 0.00
919 17 0.00
920 5 0.00
921 1 0.00
922 1 0.00
923 22 0.00
928 1 0.00
929 1 0.00
930 1 0.00
931 7 0.00
932 3 0.00
933 19 0.00
934 14 0.00
935 10 0.00
936 10 0.00
937 25 0.00
938 21 0.00
939 14 0.00
940 3 0.00
941 3 0.00
942 9 0.00
943 4 0.00
944 8 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (901 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCC
TGCTGCCACAACCCTCGGTCTGGTCTAGTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCGCGTGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAAGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCACAACCCCCCCGGCCCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:3633389 original size:26 final size:26
Alignment explanation
Indices: 3633360--3633412 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3633350 TCGGTCCGAT
* *
3633360 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
*
3633386 CTTAGACTAGGAACGAACTTCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
3633412 C
1 C
3633413 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCCGTATG
Found at i:3634128 original size:890 final size:891
Alignment explanation
Indices: 3632484--3636990 Score: 4676
Period size: 899 Copynumber: 5.0 Consensus size: 891
3632474 CTGGTCCGAT
* * * * * * *
3632484 CTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGCGCTTAGT
1 CTTAGACTGGGAACGAACTC-GTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGC
* * * * * * ** * **
3632549 CGGCCAGAGGGGTGGGATGCACAAG-ACGGGGATTGG-TCGGGTCCCCCTCCGCATGCTGCTGAT
65 CGGCCAGAGGGGCGGGATGCGCAAGCA-GGAGATCGGATCGGGTCCCCTTCTGTGTGCTACCAAT
* * * ** * ** * *
3632612 CCTACTGCCGCAACCCT-TTGTCTAATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGC
129 CCTGCTACCACAACCCTCGAGTC-GATCTGATCTGAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * ** * *
3632676 CGACTGATGAAACGAGCGGGCGGACGGGCGCGCGGGCACTACGTCGGCCAGAGAGATAGGATGCG
193 CAACCGACGAAACGAGC-GG-GG-C--G-G-GC-GTTA--ACGCCGGCCAGAGAGA-CGGATGCG
* * *
3632741 CAAGCCGTGGATTGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATG
247 CAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGTGTGCCAATG
* * *
3632806 CCATTTTTATGGCTTGTAAATTCATACAACGATCCCTTAAGCCTTCACATGAAGTTTCAAGGCAA
312 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAA
* ** *
3632871 GACGACTCGTTTGCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTT
377 GACGACTCGTTTTCTATTTTTCACGATTTTCCAAACTTTTTACGGTTTGGGATTTTTTAAATTTT
* * * * *
3632936 TTTCAGAAGGTGTTTTGGCCCCAAACTTGGTAGATGGGATCCTTGTATTTTTTTTGGCATGCACA
442 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
3633001 AAAATATTTAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCAT
507 AAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
3633065 TTCAGACACCTTAATGGCTACTGGCAGCAAACCTATAAAATCTTAAATGCTCTTTAAGGAAGTGT
571 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAAGTGT
* **
3633130 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTGAAGTACCAGCACCCATCGCA
636 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
3633195 CATCATGTGCGCACACCCCCCCGG-CACCCCAATCATTGGAACCCAAATGCCGCTGGTCAGGTTC
701 CATCATGTGCGCACA-CCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCTGGTCAGGTTC
*
3633259 TCCAGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
765 TCCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* *
3633324 CAGCATGTGCTGCCGCAACACTTGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
830 CAGCATGTGCTGTCGCAACCCTTGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
3633386 CTTAGACTAGGAACGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAACGAAC-TCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGC
* * * **
3633451 CGGCCAGAGGGGCGGGATGCGCAAGCAGGGGATCGGCT-GGGTCCCCTTCTGTGTGCTATCGGTC
65 CGGCCAGAGGGGCGGGATGCGCAAGCAGGAGATCGGATCGGGTCCCCTTCTGTGTGCTACCAATC
* ** * *
3633515 CTACTACCGTAACCCTCGATTCGATCTGATCTGAGACTGGGAATGAACTCCGTATGTCTAAGCCA
130 CTGCTACCACAACCCTCGAGTCGATCTGATCTGAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** * * * *
3633580 ACCGATGAAACGAGC-GGGCGGGC-TTTTCGTCGGCTAGAGAGACGGAATGCGTAGGCCGTGGAT
195 ACCGACGAAACGAGCGGGGCGGGCGTTAACGCCGGCCAGAGAGACGG-ATGCGCAAGCCGTGGAT
* * *
3633643 TGATAGGGTGGTTGGTGGGTTTAGGCACATGTTTATATTTCTGCGTGCCAATGCCATTTTTATGG
259 TGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGTGTGCCAATGCCATTTTTATGG
* *
3633708 CTTGTAAATTCATAAAATGTTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTT
324 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTT
* * * *
3633773 TCTATTTTTCATGATTTTCCAAACTTTTTGCAGTTCGGGATTTTTTAAATTTTTTTCGGAAGGAG
389 TCTATTTTTCACGATTTTCCAAACTTTTTACGGTTTGGGATTTTTTAAATTTTTTTCGGAAGGAG
* *
3633838 TTTT-TCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAGGTCAGC
454 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-TTCAGC
* * *
3633902 TAAAAACTCAAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAATGTCCCCATTTCAGACACTTT
518 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
3633967 AATGGCTACTGGCAGCAAAGCTATAAAATCTCAAATGCTCTTTAAGGAAGTGCGAGTTCACGAGG
583 AATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAAGTGTGAGTTCTCGAGG
* * * * *
3634032 TTTGATGAGGGATAGGGGGCCAATATAATGGCCATGTACTAGCACCCATCGCATATCATGTACGC
648 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * *
3634097 ACACTCCCAGGCCCCCCCGATCGTCGGAACCCCAATGCCGTTGGTCAAGAGTTCTCCGGC-ATGC
713 ACACCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCTGGTC-AG-GTTCTCCGGCGATGC
* * *
3634161 TCC--TGAATGGTGCCCGGTA-GAA-AATAAA--AGGCACCCGCA-ATG-CCGAG--CAGCACT-
776 TCCGGTG-ATGGTGCCCCG-ACGAAGAA-AAATGCGGCACCAGCACATGCCCGAGCCCAGCA-TG
* * * ** * *
3634215 TGCTG-CGCAACCCCTCGATCTATACCAAATCTTAGACTAGGCAAATGAACTCCAGTACCT-
837 TGCTGTCGCAACCCTTGGTTCGGT-CC-GATCTTAGACT-GG-GAATGAACTCC-GTA--TG
* * ***
3634275 CTTAAGACTGGCGAATGGAACTCGCTAATACCTATAGTCACACCC-C-AGAATCAGAATAATGCA
1 CTT-AGACTGG-GAA-CGAACTCG-T-ATGCCTA-AGTCA-ACCCACGA-AAT--G-AGCGTGCA
* * * *
3634338 GGCCGCTCAGTC-G-CAGAGGGGCGGGATGTGCAAGC-GGAGATCGG--CAGCT-CCC-TCTGTG
55 GG-CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCAGGAGATCGGATCGGGTCCCCTTCTGTG
* * * * *
3634396 TGCTATCAATCCCTGCTA-CATAA-CCTCG-GTTTGGTCTGATCTAAGAAACTGGGAATCGAAAC
119 TGCTACCAAT-CCTGCTACCACAACCCTCGAG-TCGATCTGATCT--GAGACTGGGAAT-G-AAC
* * *
3634458 TCCGTATGTCTAAGCCAACCGATGAAAGCGAGCGGAACGAGCGGGCAGGGTCACTAACAACCGGC
178 TCCGTATGCCTAAGCCAACCGACGAAA-CGAGCGG---G-GCGGGC---GT---TAAC-GCCGGC
* * *
3634523 CAAGAGAGACGGGATGCGTAAGCCGTAGACTTGATAGGGTGGTTGGTGGGTTTAGGCACATCTTT
231 C-AGAGAGAC-GGATGCGCAAGCCGTGGA-TTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTT
*** * * *
3634588 ATATTTCTACATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGTTCCCTTAAGCATTC
293 ATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * *
3634653 ACATGAAGTTTGAAGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCCAAACTTTTTACAGT
358 ACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCCAAACTTTTTACGGT
3634718 TTGGGATTTTTTAAATTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
423 TTGGGATTTTTTAAATTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * * * *
3634783 ATTTTTTTTGGAATGCACAAAAAAAGTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGGCCAT
488 ATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * ** * *
3634848 TTGAAAAAAAAAAT-TTCTTATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
552 TTG---AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCT
* ** * * *
3634912 TAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGAGATAAGGGGCCAATATAAGGG
614 CAAATGCTCTTTAAGGAAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
3634977 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTC-GCCCCTCCAATCGTCGGAACC
679 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCGTCGGAACC
*
3635041 CCAATGCCGCCT-GTCAGGTTCTCCGGTGATGCTCCGGCT-ATGGTGCCCCGACGAAGAAAAATG
744 CCAATGCCG-CTGGTCAGGTTCTCCGGCGATGCTCCGG-TGATGGTGCCCCGACGAAGAAAAATG
* * *
3635104 CAGCACCAGCACATGCCCGAGCCCAGCATGTGTTGTCGTAACCCTCGATCCGGTACGATCTTAGA
807 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCT---T---G---G---TT---
* *
3635169 CTGGGAATGAACTTCATATGCTTAGACTGGGATTGAACTCCGTATG
857 C--GG--T---C--C-GAT-CTTAGACTGGGAATGAACTCCGTATG
* ** * ** *
3635215 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACGGACGAAACGAGCGTGTGGGCGCTCAAC
1 CTTAGACTGGGAACGAACTC-GTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGC
* * * * *
3635280 CGGCCAGAGGGGCGGGATGCGCAACCCA-GAGAT-TGATCGGGTCCCCCTCTATGTGCTGCCAAT
65 CGGCCAGAGGGGCGGGATGCGCAA-GCAGGAGATCGGATCGGGTCCCCTTCTGTGTGCTACCAAT
* ** *
3635343 CCTGCTACCACAACCCTCG-GTCCAGTCCAATCTTAGACT--G---G------GTATGCCTAAGC
129 CCTGCTACCACAACCCTCGAGTCGA-TCTGATCTGAGACTGGGAATGAACTCCGTATGCCTAAGC
* ** * * *
3635396 CAACCGACGAAACAAGC-GGGCGGGCACT-ACGCCGACCAGGGAGACAGGATACGCAAGCCGTGG
193 CAACCGACGAAACGAGCGGGGCGGGCGTTAACGCCGGCCAGAGAGAC-GGATGCGCAAGCCGTGG
* *
3635459 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAT
257 ATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGTGTGCCAATGCCATTTTTAT
* * * *
3635524 GGCATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGGCGACTCAT
322 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGT
* * *
3635589 TTTCAATTTTTCACGATTTTCCAAACATTTTACGGTTTGGGATTTTTTAAAATTTTTTT-GAAAG
387 TTTCTATTTTTCACGATTTTCCAAACTTTTTACGGTTTGGGATTTTTT-AAATTTTTTTCGGAAG
* *
3635653 GAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTGTT-TTGGCATGCATAAAAGAATT
451 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT-TTGTTGGCATGCACAAAA-AATT
* *
3635717 CAGCTAAAAACGCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
514 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* **
3635782 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
579 CTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAAGTGTGAGTTCTC
* * *
3635847 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATCT
644 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * *
3635912 GTGCACAGTCCCCCGGCCCCCCCAATTGCCGGAACCCCAATGCCG-TCGGTCAGGTTCT-CGGTG
709 GCGCACA-CCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGGCG
* ** * * * *
3635975 AAGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGTCACCAGCACATGCTCGAGCCTAGCATG
772 ATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * *
3636040 TGCTGTTGCAACCC-TCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
837 TGCTGTCGCAACCCTTGGTTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * * *
3636095 CTTAGACTGGG-ACTGATCTCCGTGTGCCTAAGTTAACCCATGAAATCAGCGTACA-ACGGTTTA
1 CTTAGACTGGGAAC-GAACT-CGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGC-GCTCA
* * * * * * * *
3636158 GTCAGCTAGAGGGGCGAGATGCACAAGCTGGGGATC-GATCGGGTCCCCCTT-TGTGTGCTACCG
63 GCCGGCCAGAGGGGCGGGATGCGCAAGCAGGAGATCGGATCGGGT-CCCCTTCTGTGTGCTACCA
* * *
3636221 ATCCTGCTATCACAACCCTC-AGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
127 ATCCTGCTACCACAACCCTCGAGTC-GATCTGATCTGAGACTGGGAATGAACTCCGTATGCCTAA
* * ** *
3636285 GCCAACCAACAAAACGAACGGGCGGGAGGGCGGGCACT-ATGCCGGCCAGAGAGACGGGATGCGC
191 GCCAACCGACGAAACG-A---GC--G-GGGCGGGCGTTAACGCCGGCCAGAGAGAC-GGATGCGC
* * * *
3636349 AAGCTGTGGATCGATAGGGTGGAAGGTGGTTTTAGGCACATCTTTATATTTCTGTGTGCCAATGC
248 AAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGTGTGCCAATGC
* *
3636414 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAG
313 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAG
* * ** ** * ** ** *
3636479 ATGACTCATTTTCTATTTTTCGTGATTTTTGAAAGTTTTTGTGGTTCAGGATTTTTTAAAATTTT
378 ACGACTCGTTTTCTATTTTTCACGATTTTCCAAACTTTTTACGGTTTGGGATTTTTTAAATTTTT
* * ** * * * *
3636544 TTGGGAAGGATTTTTCACCCCAAAATTGGTAGACATGATTCTTGTATTTTGGTTGGCATGCACAA
443 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-A
3636609 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
507 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
3636674 CCAGACCCTTTAATGGCTACTGGCAGCAAACTTATAAAATCTCAAATGCTTTTTAAGGAAGTGTG
572 TCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAAGTGTG
*
3636739 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGCCTAAGTACCAGCACCCATCGCA
637 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC-AAGTACCAGCACCCATCGCA
* * ** *
3636803 CATCATGTGTGCACACCCCCCGG-CCCCCCGATCACCGGAAGCCCAATG-C-C-GGTCAGGTTCT
701 CATCATGTGCGCACACCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCT
* * * * ** *
3636864 CTGACGATGCTCCAGCT-ATGGTGCCCCAACGAAGAAAAATATGGCACTAGCACATGCCCGAGCC
766 CCGGCGATGCTCC-GGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * * *
3636928 CAGTATGTGCTGTCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
830 CAGCATGTGCTGTCGCAACCCTTGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
3636990 C
1 C
3636991 CTAAGTCAGC
Statistics
Matches: 3049, Mismatches: 396, Indels: 327
0.81 0.10 0.09
Matches are distributed among these distances:
879 3 0.00
880 142 0.05
881 8 0.00
882 1 0.00
883 12 0.00
884 13 0.00
885 12 0.00
886 7 0.00
887 14 0.00
888 13 0.00
889 112 0.04
890 397 0.13
891 54 0.02
892 33 0.01
893 28 0.01
894 25 0.01
895 145 0.05
896 32 0.01
897 30 0.01
898 30 0.01
899 438 0.14
900 6 0.00
901 6 0.00
902 168 0.06
903 6 0.00
904 7 0.00
905 142 0.05
906 80 0.03
907 289 0.09
908 36 0.01
909 9 0.00
910 24 0.01
911 201 0.07
912 97 0.03
913 53 0.02
914 139 0.05
915 17 0.01
916 3 0.00
917 11 0.00
918 2 0.00
919 9 0.00
920 7 0.00
921 1 0.00
922 4 0.00
923 23 0.01
929 1 0.00
930 1 0.00
931 7 0.00
932 7 0.00
933 21 0.01
934 9 0.00
935 12 0.00
936 21 0.01
937 25 0.01
938 16 0.01
939 9 0.00
940 3 0.00
941 5 0.00
942 9 0.00
943 6 0.00
944 8 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (891 bp):
CTTAGACTGGGAACGAACTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCC
GGCCAGAGGGGCGGGATGCGCAAGCAGGAGATCGGATCGGGTCCCCTTCTGTGTGCTACCAATCC
TGCTACCACAACCCTCGAGTCGATCTGATCTGAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGGCGGGCGTTAACGCCGGCCAGAGAGACGGATGCGCAAGCCGTGGATTG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGTGTGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTC
TATTTTTCACGATTTTCCAAACTTTTTACGGTTTGGGATTTTTTAAATTTTTTTCGGAAGGAGTT
TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAA
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAAGTGTGAGTTCTCGAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGG
TGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGC
AACCCTTGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:3635199 original size:26 final size:26
Alignment explanation
Indices: 3635163--3635234 Score: 117
Period size: 26 Copynumber: 2.8 Consensus size: 26
3635153 CCGGTACGAT
*
3635163 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
3635189 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
3635215 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
3635235 TGTATGCCTA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3636533 original size:899 final size:893
Alignment explanation
Indices: 3629814--3636990 Score: 7137
Period size: 903 Copynumber: 8.0 Consensus size: 893
3629804 CCGATCCGAT
* * * *
3629814 CTTAGACTGGGAATGAACTCCGTATGCCTA-AGTCAACCCACGAAA-CGAGCGTACGA-GAGCTC
1 CTTAGACTGGGACTGAACTCCGTATGCCTAGAGTCAACCCATGAAATC-AGCGTACAACGCGCTC
* * * * * * * * * *
3629876 AGCCGGCCAAAGGGGTGGGATGTGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACT-TTC-GCCG
65 AGTCAGCCAGAGGGGCGGGATGCGCAAG-CGGAGATCGG-CGGGTCCCCCTCT-GTGTGCTACCA
* * * *
3629939 ATCTTGCT-GCACAACCCTCAGTCCGGTCT-AGTCTTAGATTGGGAATGAACTCCGTATGCCTAA
127 ATCCTGCTACCACAACCCTCAGTCTGGTCTGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * **
3630002 GCCAACTGACGAAACGAGCGAGCGGGCGAGCGCGCGTGCACTACGTCGGCCAGAGAGACAAGATG
191 GCCAACCGACGAAACGA---A-CGGGCG-G-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
** * * * *
3630067 CGCAAGCCGTGGATCAATAGGCTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATCTGCCAA
250 CGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGTGTGCCAA
* * * * *
3630132 TGCCATTTCTATGGGTTGTAAATTCATACAATGGGTCCCTAAAGCCTTCACGTGACGTTTAAATG
315 TGCCATTTTTATGGCTTGTAAATTCATACAAT-GGTCCCTTAAGCCTTCACGTGAAGTTTCAA-G
* * * * * *
3630197 GCAAGACGACTCGCTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCAGTTCGGGATGCTTTTA
378 GCAAGACGACTCG-TTTTCTATTTTTCACGATTTTCCAAACTTTTTACGGTTTGGGAT-TTTTTA
* * *
3630262 AAATTTTTTCGG-AGGAGTTTT-GCCCCAAAACCTT-GTAGATGTGATTCCTTGTATTTTTTTTC
441 AAATTTTTTTGGAAGGAGTTTTGGCCCC-AAA-CTTGGTAGACGTGA-TCCTTGTA-TTTTTTTG
* * * *
3630324 ACATCCATAAAAAAATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAGAAAAA
502 GCATGCA-CAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA-AAAAA
* * * *
3630389 GTGTCCCCATTTCAGACACTTTAAATGGCTACTGGCAAC-AACCTGTAAAATATGC-AGTGCTCT
565 GTGTCCCCATTTCAGACACTTT-AATGGCTACTGGCAGCAAACCTATAAAATCT-CAAATGCTCT
* *
3630452 TTCAAGTG-GGTGTAAGTTCTCGAGGTTTGATGCAGGGATTTAGGGGGCC-ATATAAAGGGCCAA
628 TT-AAG-GAAGTGTGAGTTCTCGAGGTTTGATG-AGGGA--TAGGGGGCCAATAT-AAGGGCCAA
* * * * *
3630515 GATACCCAGCACCAATCGCACATCGATGTG-ACA-ACCCCCCGGCCCCCCCGATCGTCGAAACGC
687 G-TA-CCAGCACCCATCGCACATC-ATGTGCGCACACCCCCCGGCCCCCCCAATCGTCGGAACCC
* * **
3630578 CAACGCCGTCTGTCAGG---T-------T-CTCCGACGATGGTGCCCCGGTGAAGAAAAATATG-
749 CAATGCCG-CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAG-AAAA-ATGC
* * * * * ** *
3630631 GCACTAGCACTTCCCCGA-CCCTGGCATGTGCTGTCGCAACCTTCGATCCAGTCTGATCTTAGAT
811 GCACCAGCACATGCCCGAGCCC-AGCATGTGCTGTCGCAACCCTCGATCTGGTCTGATCTTAGAC
3630695 TGGGAATGAACTCCGTATG
875 TGGGAATGAACTCCGTATG
* * * * * ** *
3630714 CTTAGACTAGGAATGAACTCCGTATGCCTA-AGTGAACCCACGAAATGAGCGTAC-GGGCGCTTA
1 CTTAGACTGGGACTGAACTCCGTATGCCTAGAGTCAACCCATGAAATCAGCGTACAACGCGCTCA
* * * ** *
3630777 GCCGGCCAGAGGGGCGGGATGTGCAAGCCGCG-GATCGGTCGGGTCCCCCTCTGTGTGCTGTCGA
66 GTCAGCCAGAGGGGCGGGATGCGCAAG-CG-GAGATCGG-CGGGTCCCCCTCTGTGTGCTACCAA
* * * * * *
3630841 TCTTGCTGCCGCAACCCTCGGTCTGGTCT-AGTCTTAGATTGGGAATGAACTCCATATGCCTAAG
128 TCCTGCTACCACAACCCTCAGTCTGGTCTGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * **
3630905 CCAACTGACGAAACGAGCGGGCGGGCGGGCGCCCGTGCACTACGCCGGCCAGAGAGATAGGATGC
192 CCAACCGACGAAACGAACGGGC-GG-GGGCG---G-GCACTACGCCGGCCAGAGAGACGGGATGC
* * * *
3630970 GCAAGCCGTGGATTAATAGGCTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAAT
251 GCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGTGTGCCAAT
* * * *
3631035 GCCATTTTTATGGGTTGTAAATTCATACATTGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCA
316 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCA
* * * * * *
3631100 AGACGACTAGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCAGTTCGGGATTTTTTAAAATT
381 AGACGACTCGTTTTCTATTTTTCACGATTTTCCAAACTTTTTACGGTTTGGGATTTTTTAAAATT
* * * *
3631165 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTCGCATCCAT
446 TTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCA-
* * *
3631230 AAAAAAATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCA
509 CAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * * * **
3631295 TTTCAAACACTTTAATGGCTACTGGCAACAAACCTGTAAAATATCAAGTGCTCTTTAAGGGGGTG
574 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAAGTG
* * * *
3631360 TAAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCACGTACCAGCACCAATCGC
639 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
** * * *
3631425 ACATCATGTGCATA-ACCCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTT
704 ACATCATGTGCGCACA-CCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCG-CGGTCAGGTT
* * ** *
3631489 CTCCGACGATACTCCGACGATGGTGCCCCGTTGAAGAAAAATGCAGCACTAGCACATGCCCGAGC
767 CTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC-GCACCAGCACATGCCCGAGC
* * * * * *
3631554 CCAGAATGTGCTGCCGCAACCCTCGGTCCGGT-TCAATCTTAGACTGGGAATGAACTCCTTATG
831 CCAGCATGTGCTGTCGCAACCCTCGATCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATG
* * * *
3631617 CTTAGACTGGGAATGAACTCCGTATGCCTA-AGTCAACCCACGAAA-CGAGCGTA-TAGGCGCTC
1 CTTAGACTGGGACTGAACTCCGTATGCCTAGAGTCAACCCATGAAATC-AGCGTACAACGCGCTC
** * * * * * * ** * *
3631679 AACCGGGCAGAGGGGTGGGATGTGCAAGCCGGGGATTGGTCGGGTCCCCCTCTGCATGCTGCCGA
65 AGTCAGCCAGAGGGGCGGGATGCGCAAG-CGGAGATCGG-CGGGTCCCCCTCTGTGTGCTACCAA
* * ** * *
3631744 TCTTGCTGCTGCAACCCTCGGTCTGGTCT-AGTCTTAGATTGGGAATGAACTCCGTATGCCTAAG
128 TCCTGCTACCACAACCCTCAGTCTGGTCTGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
3631808 CCAACCGACAAAATGAGCGGGTGGGCGGGCGCACGTGCACTACGCCGGCCAGAGAGACAGGATGC
192 CCAACCGACGAAACGAACGGG-CGG-GGGCG---G-GCACTACGCCGGCCAGAGAGACGGGATGC
* * * * **
3631873 GCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATTTTTCTACGTGCCAAT
251 GCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGTGTGCCAAT
* * *
3631938 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTGAAGGCTTCACGTGAAGTTTCATGGCA
316 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCA
* * **
3632003 AGACGACTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATT
381 AGACGACTCGTTTTCTATTTTTCACGATTTTCCAAACTTTTTACGGTTTGGGATTTTTTAAAATT
* * *
3632068 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTCGGCATGCAC
446 TTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCAC
* *
3632133 AAAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGT-CCCA
510 AAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * * *
3632197 TTTCACACACATTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTTTTTAAGGAAGTG
574 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAAGTG
* * *
3632262 TGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCAC
639 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
*
3632327 ACATCATGTGCGCACACCCCCTCCGGCCCCCCCAATC-TCCGGAACCCTAATGCCGC---C---T
704 ACATCATGTGCGCACA-CCCC-CCGGCCCCCCCAATCGT-CGGAACCCCAATGCCGCGGTCAGGT
* * * *
3632385 T-T-CAG-G-TTCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACGAGCACATGCCCGAG
766 TCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC-GCACCAGCACATGCCCGAG
* * * * * *
3632446 CCTAGCATGTGCTGCCGTAACCCTCGATCTGGTCCGATCTTAGATTGGGAATGAACTCTGTATG
830 CCCAGCATGTGCTGTCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * ** *
3632510 CCTA-A----G--TCAAC-CC--A---C--G-G--AA--C--G-----AGCGTGC-GGGCGCTTA
1 CTTAGACTGGGACTGAACTCCGTATGCCTAGAGTCAACCCATGAAATCAGCGTACAACGCGCTCA
* * * * * * ** * **
3632547 GTCGGCCAGAGGGGTGGGATGCACAAGACGGGGATTGGTCGGGTCCCCCTCCGCATGCTGCTGAT
66 GTCAGCCAGAGGGGCGGGATGCGCAAG-CGGAGATCGG-CGGGTCCCCCTCTGTGTGCTACCAAT
* * * ** ** ** *
3632612 CCTACTGCCGCAACCCTTTGTCTAATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
129 CCTGCTACCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * **
3632677 GACTGATGAAACGAGCGGGCGGACGGGCGCGCGGGCACTACGTCGGCCAGAGAGATAGGATGCGC
194 AACCGACGAAACGAAC--G-GG-CGGG-G-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
3632742 AAGCCGTGGATTGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGC
253 AAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGTGTGCCAATGC
* * *
3632807 CATTTTTATGGCTTGTAAATTCATACAACGATCCCTTAAGCCTTCACATGAAGTTTCAAGGCAAG
318 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAG
* **
3632872 ACGACTCGTTTGCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTT
383 ACGACTCGTTTTCTATTTTTCACGATTTTCCAAACTTTTTACGGTTTGGGATTTTTTAAAATTTT
** * * *
3632937 TTCAGAAGGTGTTTTGGCCCCAAACTTGGTAGATGGGATCCTTGTATTTTTTTTGGCATGCACAA
448 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAA
* *
3633002 AAATATTTAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATT
512 AAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
3633066 TCAGACACCTTAATGGCTACTGGCAGCAAACCTATAAAATCTTAAATGCTCTTTAAGGAAGTGTG
576 TCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAAGTGTG
* **
3633131 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTGAAGTACCAGCACCCATCGCAC
641 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
3633196 ATCATGTGCGCACACCCCCCCGG-CACCCCAATCATTGGAACCCAAATGCCGCTGGTCAGGTTCT
706 ATCATGTGCGCACA-CCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGC-GGTCAGGTTCT
* **
3633260 CCAGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
769 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC-GCACCAGCACATGCCCGAGCCC
* * * * *
3633325 AGCATGTGCTGCCGCAACACTTGGT-TCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
833 AGCATGTGCTGTCGCAACCCTCGATCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
3633386 CTTAGACTAGGAAC-GAACTTCGTATGCCTA-AGTCAACCCACGAAATGAGCGTGC-AGGCGCTC
1 CTTAGACT-GGGACTGAACTCCGTATGCCTAGAGTCAACCCATGAAATCAGCGTACAACGCGCTC
* * * * * **
3633448 AGCCGGCCAGAGGGGCGGGATGCGCAAGCAGGGGATCGGCTGGGTCCCCTTCTGTGTGCTATCGG
65 AGTCAGCCAGAGGGGCGGGATGCGCAAGC-GGAGATCGGC-GGGTCCCCCTCTGTGTGCTACCAA
* ** * * * *
3633513 TCCTACTACCGTAACCCTCGATTC-GATCTGATCTGAGACTGGGAATGAACTCCGTATGTCTAAG
128 TCCTGCTACCACAACCCTC-AGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* ** * * * * * *
3633577 CCAACCGATGAAACG-A---GC--GGGCGGGCTTTTCGTCGGCTAGAGAGACGGAATGCGTAGGC
192 CCAACCGACGAAACGAACGGGCGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * *
3633636 CGTGGATTGATAGGGTGGTTGGTGGGTTTAGGCACATGTTTATATTTCTGCGTGCCAATGCCATT
257 CGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGTGTGCCAATGCCATT
* *
3633701 TTTATGGCTTGTAAATTCATAAAATGTTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGA
322 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGA
* * * *
3633766 CTCGTTTTCTATTTTTCATGATTTTCCAAACTTTTTGCAGTTCGGGATTTTTT-AAATTTTTTTC
387 CTCGTTTTCTATTTTTCACGATTTTCCAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTT-
*
3633830 GGAAGGAGTTTT-TCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
451 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAA
* * * *
3633894 AGGTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAATGTCCCCATTTCA
515 A-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
3633959 GACACTTTAATGGCTACTGGCAGCAAAGCTATAAAATCTCAAATGCTCTTTAAGGAAGTGCGAGT
579 GACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAAGTGTGAGT
* * * * *
3634024 TCACGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCATGTACTAGCACCCATCGCATATC
644 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
3634089 ATGTACGCACACTCCCAGGCCCCCCCGATCGTCGGAACCCCAATGCCGTTGGTCAAGAGTTCTCC
709 ATGTGCGCACACCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCG-CGGTC-AG-GTTCTCC
* * *
3634154 GGC-ATGCTCCTGA--ATGGTGCCCGGTA-GAA-AATAAAAG-GCACCCGCA-ATG-CCGAG--C
771 GGCGATGCTCC-GACGATGGTGCCCCG-ACGAAGAA-AAATGCGCACCAGCACATGCCCGAGCCC
* ** *
3634209 AGCACT-TGCTG-CGCAACCCCTCGATCT-ATACCAAATCTTAGACTAGGCAAATGAACTCCAGT
833 AGCA-TGTGCTGTCGCAA-CCCTCGATCTGGT--CTGATCTTAGACT-GG-GAATGAACTCC-GT
3634271 ACCT-
891 A--TG
* * * **
3634275 CTTAAGACTGGCGAATGGAACT-CGCTAATACCTATAGTCACACCCCA-G-AATCAGAATA-ATG
1 CTT-AGACTGG-GACT-GAACTCCG-T-ATGCCTAGAGTCA-A-CCCATGAAATCAGCGTACA--
* * * *
3634336 CAGGCCGCTCAGTC-G-CAGAGGGGCGGGATGTGCAAGCGGAGATCGGC-AG-CTCCCTCTGTGT
57 -ACG-CGCTCAGTCAGCCAGAGGGGCGGGATGCGCAAGCGGAGATCGGCGGGTCCCCCTCTGTGT
* * * * *
3634397 GCTATCAATCCCTGCTA-CATAA-CCTCGGTTTGGTCTGATCTAAGAAACTGGGAATCGAAACTC
120 GCTACCAAT-CCTGCTACCACAACCCTCAGTCTGGTCTGATCTTAG--ACTGGGAAT-G-AACTC
* * * * *
3634460 CGTATGTCTAAGCCAACCGATGAAAGCGAGCGGAACGAGCGGGCAGGGTCACTAACAACCGGCCA
180 CGTATGCCTAAGCCAACCGACGAAA-CGAACGG-GCG-G-GGGC-GGG-CACT-AC-GCCGGCC-
* * *
3634525 AGAGAGACGGGATGCGTAAGCCGTAGACTTGATAGGGTGGTTGGTGGGTTTAGGCACATCTTTAT
236 AGAGAGACGGGATGCGCAAGCCGTGGA-TTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTAT
*** * * *
3634590 ATTTCTACATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGTTCCCTTAAGCATTCAC
300 ATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * *
3634655 ATGAAGTTTGAAGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCCAAACTTTTTACAGTTT
365 GTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCCAAACTTTTTACGGTTT
3634720 GGGATTTTTT-AAATTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
430 GGGATTTTTTAAAATTTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * * *
3634784 TTTTTTTTGGAATGCACAAAAAAAGTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGGCCATT
494 -TTTTTTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* * ** * * *
3634849 TGAAAAAAAAAAT-TTCTTATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTT
557 TG---AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTC
** * * *
3634913 AAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGAGATAAGGGGCCAATATAAGGGC
619 AAATGCTCTTTAAGGAAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* *
3634978 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTC-GCCCCTCCAATCGTCGGAACCC
684 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCGTCGGAACCC
* * * *
3635042 CAATGCCGCCTGTCAGGTTCTCCGGTGATGCTCCGGCTATGGTGCCCCGACGAAGAAAAATGCAG
749 CAATGCCG-CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC-G
* * *
3635107 CACCAGCACATGCCCGAGCCCAGCATGTGTTGTCGTAACCCTCGATCCGGTAC-GATCTTAGACT
812 CACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGATCTGGT-CTGATCTTAGACT
* *
3635171 GGGAATGAACTTCATATG
876 GGGAATGAACTCCGTATG
* * * * * * *
3635189 CTTAGACTGGGATTGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACGG
1 CTTAGACTGGGACTGAACTCCGTATGCCTAGA----G--TCAAC-C--CATG---AAATCAGCGT
* * * * *
3635254 ACGAAACGAGCGTGTGGGC-GCTCAACCGGCCAGAGGGGCGGGATGCGCAACCCAGAGATTGATC
54 AC--AAC--GCG-CT---CAG-TC-A---GCCAGAGGGGCGGGATGCGCAA-GCGGAGATCG-GC
* * * ** **
3635318 GGGTCCCCCTCTATGTGCTGCCAATCCTGCTACCACAACCCTCGGTCCAGTCCAATCTTAGACT-
104 GGGTCCCCCTCTGTGTGCTACCAATCCTGCTACCACAACCCTCAGTCTGGTCTGATCTTAGACTG
*
3635382 -G---G------GTATGCCTAAGCCAACCGACGAAAC-AA---GC--GGGCGGGCACTACGCCGA
169 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGGGCGGGCACTACGCCGG
* * * * *
3635431 CCAGGGAGACAGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
234 CCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTA
*
3635496 TATTTCTGTGTGCCAATGCCATTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCCTTCA
299 TATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * * *
3635561 CGTGAAGTTTCATGGCAAGGCGACTCATTTTCAATTTTTCACGATTTTCCAAACATTTTACGGTT
364 CGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCCAAACTTTTTACGGTT
* *
3635626 TGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTA
429 TGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * *
3635691 TTTGTTTTGGCATGCATAAAAGAATTCAGCTAAAAACGCGATGTGTACAAGATTTTGTGACCATT
494 TTT-TTTTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
*
3635756 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
557 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAA
** *
3635821 TGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
622 TGCTCTTTAAGGAAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * * * *
3635886 GTACCAACACCCATCGCACATCATCTGTGCACAGTCCCCCGGCCCCCCCAATTGCCGGAACCCCA
687 GTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCAATCGTCGGAACCCCA
* * *
3635951 ATGCCGTCGGTCAGGTTCT-CGGTGAAGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGTCA
751 ATGCCG-CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCG-CA
* * *
3636015 CCAGCACATGCTCGAGCCTAGCATGTGCTGTTGCAACCCTCGATCTGGTCTGATCTTAGACTGGG
814 CCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGATCTGGTCTGATCTTAGACTGGG
3636080 AATGAACTCCGTATG
879 AATGAACTCCGTATG
* * * * *
3636095 CTTAGACTGGGACTGATCTCCGTGTGCCTA-AGTTAACCCATGAAATCAGCGTACAACG-GTTTA
1 CTTAGACTGGGACTGAACTCCGTATGCCTAGAGTCAACCCATGAAATCAGCGTACAACGCGCTCA
* * * * * * *
3636158 GTCAGCTAGAGGGGCGAGATGCACAAGCTGGGGATCGATCGGGTCCCCCTTTGTGTGCTACCGAT
66 GTCAGCCAGAGGGGCGGGATGCGCAAGC-GGAGATCG-GCGGGTCCCCCTCTGTGTGCTACCAAT
*
3636223 CCTGCTATCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CCTGCTACCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
3636288 AACCAACAAAACGAACGGGCGGGAGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGC
194 AACCGACGAAACGAACGGGC-GG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * *
3636353 TGTGGATCGATAGGGTGGAAGGTGGTTTTAGGCACATCTTTATATTTCTGTGTGCCAATGCCATT
257 CGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGTGTGCCAATGCCATT
* * *
3636418 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGATGA
322 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGA
* ** ** * ** ** *
3636483 CTCATTTTCTATTTTTCGTGATTTTTGAAAGTTTTTGTGGTTCAGGATTTTTTAAAATTTTTTGG
387 CTCGTTTTCTATTTTTCACGATTTTCCAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTG
* ** * * * *
3636548 GAAGGATTTTTCACCCCAAAATTGGTAGACATGATTCTTGTATTTTGGTTGGCATGCACAAAAAA
452 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT-TTTGGCATGCAC-AAAAA
*
3636613 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAG
515 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
3636678 ACCCTTTAATGGCTACTGGCAGCAAACTTATAAAATCTCAAATGCTTTTTAAGGAAGTGTGAGTT
580 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAAGTGTGAGTT
*
3636743 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGCCTAAGTACCAGCACCCATCGCACATC
645 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC-AAGTACCAGCACCCATCGCACATC
* * ** * * *
3636807 ATGTGTGCACACCCCCCGG-CCCCCCGATCACCGGAAGCCCAATG-C-CGGTCAGGTTCTCTGAC
709 ATGTGCGCACACCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCGGTCAGGTTCTCCGGC
* * * *
3636869 GATGCTCC-AGCTATGGTGCCCCAACGAAGAAAAATATG-GCACTAGCACATGCCCGAGCCCAGT
774 GATGCTCCGA-CGATGGTGCCCCGACGAAG-AAAA-ATGCGCACCAGCACATGCCCGAGCCCAGC
* *
3636932 ATGTGCTGTCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
836 ATGTGCTGTCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
3636990 C
1 C
3636991 CTAAGTCAGC
Statistics
Matches: 5412, Mismatches: 616, Indels: 503
0.83 0.09 0.08
Matches are distributed among these distances:
865 24 0.00
866 5 0.00
867 590 0.11
868 7 0.00
869 3 0.00
870 5 0.00
871 3 0.00
872 3 0.00
873 1 0.00
874 4 0.00
875 2 0.00
876 110 0.02
877 1 0.00
878 1 0.00
879 1 0.00
880 82 0.02
882 1 0.00
883 11 0.00
884 18 0.00
885 17 0.00
886 12 0.00
887 14 0.00
888 19 0.00
889 114 0.02
890 400 0.07
891 77 0.01
892 85 0.02
893 155 0.03
894 31 0.01
895 153 0.03
896 81 0.01
897 81 0.01
898 126 0.02
899 516 0.10
900 128 0.02
901 44 0.01
902 457 0.08
903 612 0.11
904 38 0.01
905 147 0.03
906 149 0.03
907 291 0.05
908 33 0.01
909 9 0.00
910 32 0.01
911 209 0.04
912 100 0.02
913 71 0.01
914 143 0.03
915 20 0.00
916 14 0.00
917 9 0.00
918 12 0.00
919 19 0.00
920 5 0.00
921 1 0.00
922 7 0.00
923 24 0.00
924 2 0.00
925 1 0.00
926 1 0.00
927 3 0.00
930 1 0.00
932 1 0.00
933 19 0.00
934 8 0.00
935 1 0.00
936 11 0.00
937 21 0.00
938 16 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
CTTAGACTGGGACTGAACTCCGTATGCCTAGAGTCAACCCATGAAATCAGCGTACAACGCGCTCA
GTCAGCCAGAGGGGCGGGATGCGCAAGCGGAGATCGGCGGGTCCCCCTCTGTGTGCTACCAATCC
TGCTACCACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAACGGGCGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
GATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGTGTGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCG
TTTTCTATTTTTCACGATTTTCCAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAG
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAAGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCGGTCAGGTTCTCCGGCGATGCTC
CGACGATGGTGCCCCGACGAAGAAAAATGCGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC
GCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:3638711 original size:26 final size:26
Alignment explanation
Indices: 3638677--3638729 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3638667 CCTGTCCGTT
*
3638677 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
3638703 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
3638729 C
1 C
3638730 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:3639589 original size:26 final size:26
Alignment explanation
Indices: 3639553--3639605 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3639543 CTGGTCCAAT
* *
3639553 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
3639579 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
3639605 C
1 C
3639606 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3641370 original size:26 final size:26
Alignment explanation
Indices: 3641330--3641382 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
3641320 ACAGTTTGAT
3641330 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGTAATGAACTCCGTATG
*
3641356 CTTAGACTAGG-AATGAACTCTGTATG
1 CTTAGACT-GGTAATGAACTCCGTATG
3641382 C
1 C
3641383 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACTCCGTATG
Found at i:3642268 original size:26 final size:26
Alignment explanation
Indices: 3642232--3642284 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3642222 CTGGTCCGAT
3642232 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
3642258 CTTAGACTGGGACTGATCTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
3642284 C
1 C
3642285 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3642482 original size:903 final size:896
Alignment explanation
Indices: 3637040--3643909 Score: 8511
Period size: 903 Copynumber: 7.7 Consensus size: 896
3637030 GTATGATGCT
* * * * *
3637040 GATCCTGCTGCCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAA
1 GATCCTGCTACCGCAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
3637105 GCCAACTGGCCAAACGA------GCGAGCGGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCG
66 GCCAACCGACGAAACGAGCGGGTGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG
* *
3637164 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGTCAATG
131 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* * *
3637229 CCATTTTTATGGCTTGTAAACTCATACAATGTTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAA
196 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * * *
3637294 GACGATTCGTTTTCTATTTTTCACGATTCTCTAAACTTTTTACAGTTTGGG-ATGTTTTAAAATT
261 GACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGAAT-TTTTAAAATT
* *
3637358 TTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCAC
325 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC
*
3637423 AGAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
390 AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
3637488 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
455 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
3637553 TGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGC
520 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * *
3637618 ACATCATGTGCACACA-CCCCCAG-GCCCCCGATCG-CAGGAACCCC-ATGCCGCCGATCAGGTT
585 ACATCATGTGCGCACACCCCCCCGCACCCCCGATCGTC-GGAACCCCAATGCCACCGGTCAGGTT
* * *
3637679 CTCCGAGGATGGTCCGACGATGGTGCCCC-GACGAAGAAAAATGCAGTACCAGCACATGCCCGAG
649 CT-CG-GGATGCT-CGACGATGGTGCCCCAG-CGAAGAAAAATGC-GCACCAGCACATGCTCGAG
* * * * *
3637743 CCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTACGTATGC
709 CCCAGCATGTGCTGCAGCAACCCTCGGTC-AGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *** *
3637808 TTAGATTGGGAATGAACTCCGTGTGCCTAAGTTAACCCATGAAATCAGCGTGCAACCG-TTCAGT
773 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTGCGGGCGCTT-AGC
* * * * ** * * **
3637872 CAGCTAGAGGGGCGGGATGCACAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACC
837 CAGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTACTGTC
* * * * *
3637932 GATCCTGCTATCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
1 GATCCTGCTACCGCAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * ** * * * * *
3637997 GCCAACCAACAAAATGA-AAGG-GCGGGAGGGCAGGCACTATGCCGGCTAGAGAGACGGGATGCG
66 GCCAACCGACGAAACGAGCGGGTGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG
* **
3638060 CAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC-T-TT-ATATTTCTGTGTGCCAATG
131 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
*
3638122 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCATAAGCCTTCACGTGAAGTTTCATGGCAA
196 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * ** * * *
3638187 AATGACTCATTTTCTATTTTTCGTGATTTTTGAAAGTTTTTGCGGTTCGGGATTTTTTAAAATTT
261 GACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGAATTTTTAAAATTT
* ** * * * * *
3638252 TTTTGGAAGG-GTTTTTCACCCCAAAATTGGTAGACATGATTCTTGTATTTTTGTTGGCTTGCAC
326 TTTCGGAAGGAG-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC
* *
3638316 AAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
390 AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
3638381 TTTGAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
455 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
3638446 TGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
520 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* ** * * * *
3638511 ACATCATGTGTGCACACCCCCTGGC-CACCTCGATCGCCGGAACCCCAATGCCGCCGATCAGGTT
585 ACATCATGTGCGCACACCCCCCCGCAC-CCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTT
*
3638575 CTCCGGTGATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGC
649 CT-CGG-GATGCT-CGACGATGGTGCCCCAGCGAAGAAAAATGC-GCACCAGCACATGCTCGAGC
* * * * * * * *
3638640 CCAGGATGGGCTGCTGCAACCTTCGATCCTGTCCGTTCTTAGACTGGGAATGAACTCCGTATGCT
710 CCAGCATGTGCTGCAGCAACCCTCGGT-CAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* * ** * * **
3638705 TAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCACTTAACTG
774 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTGCGGGCGCTTAGCCA
* * * * *
3638770 GCCGGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCTCCTCTA--TAGGCTATC
839 GCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTA--CTGTC
* * * *
3638828 GATCCTGCTGCCACAACCCT-AGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTA
1 GATCCTGCTACCGCAACCCTCA-GTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTA
* *
3638892 AGCCAACCGACGAAACGAGCGGACG-GACGGGCGAACGAGCGGGCATTACGCCGGCCAGAGAGAC
65 AGCCAACCGACGAAACGAGCGG--GTG-CGGGCG---G-GCGGGCACTACGTCGGCCAGAGAGAC
*
3638956 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTCAGGCACATCTTCATATTTCTGCA
123 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
* *
3639021 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTGACGTGAAGTTT
188 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * * * *
3639086 CATGGCAACACGACTCGTTTTCAATTTTTCACGATTGTCGAAACTTTTTGTGGTTTGGGATTTTT
253 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGAATTTT
* * * *
3639151 TAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGG
318 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGG
*
3639216 CGTGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTAG-GACCATTTGAAAAAAG
383 CATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTT-GTGACCATTTGAAAAAAG
* *
3639280 TGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTGAAATCTCAAATGCTCTTTA
447 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * * * *
3639345 TGGGTGTGTGGGTTCTCAAGGTTTGATGAGGGATGGGGGGCCAATATAAGGGCCAAGTACCAGCA
512 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * **
3639410 CCCATCGCACATCATGTGCGCACACCCCCGTCGGC-CCCCTCGATCATCAAAACCCCAAT---AC
577 CCCATCGCACATCATGTGCGCACACCCCC--CCGCACCCC-CGATCGTCGGAACCCCAATGCCAC
* * * *
3639471 C-GT-AGG-T-T-AGG-TTCTCCGACGA---TG-CTC--CGATG----AT--G-----G----TG
639 CGGTCAGGTTCTCGGGATGCT-CGACGATGGTGCCCCAGCGAAGAAAAATGCGCACCAGCACATG
* * * * * ** *
3639509 CCCGAGCCTAGCATGTGCTGCCGCAACCCTTGGTCTGGTCCAATCTTAGGCTGGGAATGAACTCC
703 CTCGAGCCCAGCATGTGCTGCAGCAACCCTCGGTC-AGTCTGATCTTAGACTGGGAATGAACTCC
* ** * *
3639574 GTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATCCGGGCGC
767 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTGCGGGCGC
* * * * ** ** * **
3639639 TCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGGGTGCTACC
832 TTAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTACTGTC
* ** * * ** * * *
3639704 GATCCTACTGGCACAACTCTTGGTCTGGTCTGATCTTAGACTGGGACTGAACTCCGTATGCCTAA
1 GATCCTGCTACCGCAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * *
3639769 GCCAATCGACGAAACGAGCGGACGGGCGGACGGGCGGCCAATACGTCGACCAGAGAGACGGTATG
66 GCCAACCGACGAAACGAGCGG--GTGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATG
* * * *
3639834 CGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCACATTTCTGCATTCCAA
129 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
*
3639899 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGTC
194 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * * * * *
3639964 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGATTAGAGATTTTTTTTAAA
259 AAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGA-ATTTTTAAAA
* * * * *
3640029 TTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGGGATCCCTGTATTTTTGTTGGCATGC
323 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC
3640094 ACCAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
388 A-CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
3640159 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAATCTGTAAAATCTCAAATGCTCTTTAAGGGG
452 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * *
3640224 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGTACCCAT
517 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * * *
3640289 TGCACATCATGTGCCCACACCCCCTCCGGGC-CCCCCGATTGTCGGAACCCCAATACCGCTGGTC
582 CGCACATCATGTGCGCACACCCCC-CC--GCACCCCCGATCGTCGGAACCCCAATGCCACCGGTC
* * * * *
3640353 AGGTTCTCCGACGATGCTCCGACGGTGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCC
644 AGGTTCT-CG-GGATGCT-CGACGATGGTGCCCCAGCGAAGAAAAATGCG-CACCAGCACATGCT
* * * * * * * *
3640418 CGATCCCAGCATGTGCTACCGTAACCCTCGGTCCTGTCCGATCTGAGACTGGGAATGAACTCTGT
705 CGAGCCCAGCATGTGCTGCAGCAACCCTCGGT-CAGTCTGATCTTAGACTGGGAATGAACTCCGT
* * *
3640483 ATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTTAACCCAC--AA-AA-----CGAGCG--T
769 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTGCGGGCGCTT
* * * * *
3640538 -G-CAGCC------GC----T---C-AGTCG-GGTATCGACCGGGTCCCTCTCTGCGTGCTGCC
834 AGCCAGCCAGAGGGGCGGGATGCGCAAGCCGAGG-ATCGACCGGGTCCCCCTCTACGTACTGTC
* * * * *
3640585 AATCCTGCT-CCTACAACCCTCAGTCCAGT-TCAATCTTAGACTAGGAATGAACTCTGTATGCCT
1 GATCCTGCTACC-GCAACCCTCAGTCCGGTCT-AATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * *
3640648 AAGACAACCGATGATACGA------GCGAGCAGGCGGGCACTACGCCGGCCAGAGAGGCGGGATG
64 AAGCCAACCGACGAAACGAGCGGGTGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATG
* * *
3640707 CGCAAGCCGTGGATCGATAGGATGGTAGGTGGCTTTAGGCACATCTTCATATTTCTTCATGCCAA
129 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* * * *
3640772 TGCAATTTTTATGGCTTGTAAATTAATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTTATGGC
194 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * * * *
3640837 AAGACGACTCGTTTTATATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGAGATTTTTTAAAAT
259 AAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGAATTTTTAAAAT
* **
3640902 TTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTCA-ACAAGATCCTTGTATTTTTTTTGGCATGC
324 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT-AGACGTGATCCTTGTATTTTTTTTGGCATGC
* *
3640966 ACAAAAAAATTCAGCTAAAAACCCAAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
388 ACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * * *
3641031 CATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCGAATGCTCTTTCAGGGGG
453 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
3641096 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
518 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *
3641161 GCACATCATGTGTGCACACCCCCCCAACACCCCCGATCGTCGGAACCCCAACGCCACCGGTCAGG
583 GCACATCATGTGCGCACACCCCCCC-GCACCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGG
** *
3641226 TTCTTCGGCGATGCTTCGACGATGGTGCCCTGGCGAAGAAAAATACAGCACCAGCACATGCTCGA
647 TTC-TCGG-GATGC-TCGACGATGGTGCCCCAGCGAAGAAAAATGC-GCACCAGCACATGCTCGA
* * * * *
3641291 GCCCAGCACGTGCTGCAACAACCCTCGCTACAGTTTGATCTTAGACTGGTAATGAACTCCGTATG
708 GCCCAGCATGTGCTGCAGCAACCCTCGGT-CAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
3641356 CTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATAAGCGTGCGGGTGCTCAAC
772 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTGCGGGCGCTTAGC
* * ** * **
3641421 CAGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCACCCTCTACGTACTACC
837 CAGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTACTGTC
* * * * * *
3641481 GATCCTGCTGCCGCCACCTTC-GATCCGATCTGATCTAAGACTGGGAATGAACTCCGTATGCCTA
1 GATCCTGCTACCGCAACCCTCAG-TCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
3641545 AGCCAACCGACGAAACAAGCAAGCTGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATG
65 AGCCAACCGACGAAACGAGC-GGGTGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATG
* *
3641610 CGCAAGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAA
129 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
3641675 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
194 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* ** *
3641740 AAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCAATTTGGGAATTTTTAAAAT
259 AAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGAATTTTTAAAAT
* **
3641805 TTTTTCGGAAGGAATTTTGGTACCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
324 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
3641870 CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
389 CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
3641935 ATTTCAGACACTTTAATGGCTCCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
454 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
3642000 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA
519 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
3642065 CACATCATTTGCGCACACCCCCCCGGACCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
584 CACATCATGTGCGCACACCCCCCCGCACCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTT
*
3642130 CTCCGGGGATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATGCGTCACCAGCACATGCTCGTGC
649 CT-C-GGGATGCT-CGACGATGGTGCCCCAGCGAAGAAAAATGCG-CACCAGCACATGCTCGAGC
* ** * * *
3642195 CTAGCATGTGCTGTTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCT
710 CCAGCATGTGCTGCAGCAACCCTCGGTC-AGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* * **
3642260 TAGACTGGGACTGATCTCCGTATGCCTAAGTCAACCCAC-AGAACGAGCGTGCGGGCGCTTAGCC
774 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA-AATAAGCGTGCGGGCGCTTAGCC
* * * * * *
3642324 GGCCAGAAGGGCGGGATGCGTAAGCCGAGGATTGACCGGGTCCCCCT-TAGTGTGCTGTC
838 AGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTA-CGTACTGTC
* ** * ** *
3642383 GATCCTGCTACCACAACCCTCAGTTTGGTCCAATCTTAGACTGGGAATGAACTCCGTACACCGAA
1 GATCCTGCTACCGCAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * *
3642448 GCCAACCGACGAAACGAGCGGGTGAACGGGCGGGCGTGCACTACGTCGGCCTGAGAGGCGGGATG
66 GCCAACCGACGAAACGAGCGGGTG--CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATG
* *
3642513 TGCAAGCCGTGGATCGATAGGGTGGTACGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
129 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
*
3642578 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGC
194 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * *
3642643 AAGACGACTCGTTTTCTATTTTTCATGATTTTCTAAACTTTTTACGGTTCGGG-ATGTTTTAAAA
259 AAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGAAT-TTTTAAAA
* * ** *
3642707 TTTTTTCGAAAGGTGTTTTGGCCCCAAACTTCATAGACGTGATCCTTGTATTTTTCTTGGCATGC
323 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC
*
3642772 ACCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
388 A-CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * *
3642837 CTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCTAATGCTTTTTAAGGGG
452 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * *
3642902 GTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCATCACCCAT
517 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * *
3642967 CGCACATCATGTGCGCACACCCCCCCGGCGCCCCCGATCGTCGGAATCCCAATGCCACTGGTCAG
582 CGCACATCATGTGCGCACACCCCCCC-GCACCCCCGATCGTCGGAACCCCAATGCCACCGGTCAG
* * * *
3643032 G-T-TC----T--TCGGCGATGGTGCCCCAGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
646 GTTCTCGGGATGCTCGACGATGGTGCCCCAGCGAAGAAAAATG-CGCACCAGCACATGCTCGAGC
* * * ** * * *
3643089 CCAGCATGTGCTACCGTAAAACTCTGTCCATTCTGATCTTAGACTTGGAATGAACTCCGTATGCT
710 CCAGCATGTGCTGCAGCAACCCTCGGT-CAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* *
3643154 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATTAGCGTGCGGGCG-TTCAGCC
774 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTGCGGGCGCTT-AGCC
*
3643218 AGCCAGAGGGGCGGGATGCGCAAGCC-AGGGATCGACTGGGTCCCCCTCTACGTACTGTC
838 AGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGACCGGGTCCCCCTCTACGTACTGTC
*
3643277 GATCCTGCCACCGCAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
1 GATCCTGCTACCGCAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * *
3643342 GCCAACCGACGAAACGAGCGGGCGGGTGGGCGGACGGGCACTACGTCGGCCAGAGAGACGGGATG
66 GCCAACCGACGAAACGAGC-GG-GTGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATG
** * * *
3643407 CGCAAGCCGTGGATCGATAGGGTGGTAGACGGGTTTAGGGACATCTTCATATTTCTGCTTTCCAA
129 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* *
3643472 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCCTGGC
194 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * *
3643537 AAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAAT
259 AAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGAATTTTTAAAAT
* * * * * *
3643602 TTTTTTGGAAGGATTTTTGGTCCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTA
324 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
3643667 CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTT-AAAAAAGTGTCCCC
389 CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
3643731 ATTTAAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
454 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
3643796 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
519 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
3643861 CACATCATGTGCGCACACCCCCCAGCCCCCCCGATCGCCGAAACCCCAA
584 CACATCATGTGCGCACACCCCCCCGCACCCCCGATCGTCGGAACCCCAA
3643910 CAGATGAAAC
Statistics
Matches: 5216, Mismatches: 615, Indels: 295
0.85 0.10 0.05
Matches are distributed among these distances:
869 1 0.00
870 173 0.03
871 207 0.04
872 262 0.05
873 273 0.05
874 219 0.04
875 7 0.00
876 250 0.05
877 2 0.00
878 7 0.00
879 3 0.00
880 6 0.00
881 91 0.02
882 6 0.00
884 1 0.00
885 11 0.00
888 5 0.00
889 4 0.00
891 24 0.00
892 234 0.04
893 435 0.08
894 548 0.11
895 37 0.01
896 462 0.09
897 12 0.00
898 10 0.00
899 8 0.00
900 6 0.00
901 10 0.00
902 310 0.06
903 756 0.14
904 281 0.05
905 38 0.01
906 4 0.00
907 490 0.09
908 4 0.00
909 19 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
GATCCTGCTACCGCAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
GCCAACCGACGAAACGAGCGGGTGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG
CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
GACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGAATTTTTAAAATTT
TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
AAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
CATCATGTGCGCACACCCCCCCGCACCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCT
CGGGATGCTCGACGATGGTGCCCCAGCGAAGAAAAATGCGCACCAGCACATGCTCGAGCCCAGCA
TGTGCTGCAGCAACCCTCGGTCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTGCGGGCGCTTAGCCAGCCAGAG
GGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTACTGTC
Found at i:3643164 original size:26 final size:26
Alignment explanation
Indices: 3643126--3643178 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3643116 CCATTCTGAT
*
3643126 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3643152 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3643178 C
1 C
3643179 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3644435 original size:559 final size:558
Alignment explanation
Indices: 3643378--3644467 Score: 1781
Period size: 559 Copynumber: 2.0 Consensus size: 558
3643368 TGGGCGGACG
* * * *
3643378 GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGACGGGTTT
1 GGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCATAGATCGATAGGGTGGTAGACGGGTTT
* * * *
3643443 AGGGACATCTTCATATTTCTGCTTTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
66 AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
3643508 CCTTAAGCCTTCACATGAAGTTTCCTGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAA
131 CCTAAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAA
* * * *
3643573 ACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGTCCCAAACCTGGTAGA
196 ACTTTTTACGGTTCAGGATTTTTCAAAATTTTTTCGGAAGGAGTTTTGGTCCCAAACCTGGTAGA
* * *
3643638 CGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGA
261 CATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACACAAAGTGTACAAGA
*
3643703 TTTTGTGACCATTTAAAAAAGTGTCCCCATTTAAGATACTTTAATGGCTACTGGCAGCAAACCTG
326 TTTTGTGACCATTTAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
3643768 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
391 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
*
3643833 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATCG
456 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC-GCCCCCCCGATCG
3643898 CCGAAACCCCAACAGATGAAACGAGCGGGCAGACGGGCA
520 CCGAAACCCCAACAGATGAAACGAGCGGGCAGACGGGCA
* * **
3643937 GGCACTACGCCGGCGAGAGAGACAGGATGCGCATGCCATAGATCGATAGGGTGGTAGGTGGGTTT
1 GGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCATAGATCGATAGGGTGGTAGACGGGTTT
3644002 AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
66 AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
3644067 CCTAAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAG
131 CCTAAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAA
* * *
3644132 ACTTTTTACTGTTC-GAGATTTTTCAAAATTTTTTCGGAAGGAGTTTTGG-CCCCAACTTGGTAG
196 ACTTTTTACGGTTCAG-GATTTTTCAAAATTTTTTCGGAAGGAGTTTTGGTCCCAAACCTGGTAG
*
3644195 ACATGATCCTTGTATTCTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACACGAAGTGTACAA
260 ACATGATCCTTGTATT-TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACACAAAGTGTACAA
* * * *
3644259 GATTTTGTGACCATTTGAAAAAATTGTCCCCATTTCAGACATTTTAATGGCTATTGGCAGCAAAC
324 GATTTTGTGACCATTT-AAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAAC
3644324 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
388 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
*
3644389 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCGAT
453 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGCCCCCCCGAT
*
3644454 CGTCGAAACCCCAA
518 CGCCGAAACCCCAA
3644468 TGCTGCAGGT
Statistics
Matches: 490, Mismatches: 38, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
558 108 0.22
559 382 0.78
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (558 bp):
GGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCATAGATCGATAGGGTGGTAGACGGGTTT
AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTAAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAA
ACTTTTTACGGTTCAGGATTTTTCAAAATTTTTTCGGAAGGAGTTTTGGTCCCAAACCTGGTAGA
CATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACACAAAGTGTACAAGA
TTTTGTGACCATTTAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGCCCCCCCGATCGC
CGAAACCCCAACAGATGAAACGAGCGGGCAGACGGGCA
Found at i:3644615 original size:26 final size:26
Alignment explanation
Indices: 3644586--3644638 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3644576 CTGATCCAAT
* *
3644586 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCGGTATG
*
3644612 CTTAGATTGGGAAAGAACTCGGTATG
1 CTTAGACTGGGAAAGAACTCGGTATG
3644638 C
1 C
3644639 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCGGTATG
Found at i:3646397 original size:26 final size:26
Alignment explanation
Indices: 3646359--3646410 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
3646349 CCAGTCTGAT
* **
3646359 CTTAGATTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAAAACCGTATG
*
3646385 CTTAGACTGGGAATGAAAACCGTATG
1 CTTAGACTAGGAATGAAAACCGTATG
3646411 AATAAGTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAAACCGTATG
Found at i:3646517 original size:185 final size:185
Alignment explanation
Indices: 3646200--3646570 Score: 469
Period size: 185 Copynumber: 2.0 Consensus size: 185
3646190 CCGGTCTGAT
*
3646200 CTTAGACTGGGAATGAACAACATATCAATAAGTCAACCCAAGAAACGAGTGTGCAAGGGCTCAGC
1 CTTAGACTGGGAATGAACAACATATCAATAAGTCAACCCAAGAAACGAGCGTGCAAGGGCTCAGC
** * * * *
3646265 TGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTACGTGCTATCGATCC
66 CAGCCAGAGGGGCAGGATGAGCAAGCCAGGGAACGACCGGGTCCCCCTCTACGTGCTATCAATCC
** * *
3646330 TGCTGCCACAACCCTCGGTCCAGTCTGATCTTAGATTAG-GAATGAACTCCGTATG
131 TGCTGCCACAACCCTCAATCCAGTCTGACCTTAGACT-GTGAATGAACTCCGTATG
* * * *** *
3646385 CTTAGACTGGGAATGAA-AACCGTATGAATAAGTCAACCCACGAAACGAGCGTGTGGGGGCTCGG
1 CTTAGACTGGGAATGAACAA-CATATCAATAAGTCAACCCAAGAAACGAGCGTGCAAGGGCTCAG
* ** *
3646449 CCAGCCAGAGGGGCAGGATGAGCAAG-CTGGTGAACGGTCGGGTCCCCCTCTACGTGCTTTCAAT
65 CCAGCCAGAGGGGCAGGATGAGCAAGCCAGG-GAACGACCGGGTCCCCCTCTACGTGCTATCAAT
* **
3646513 CCTGCTGCCGCAACCCTCAATCTGGTCTGACCTTAGACTGTGAATGAACTCCGTATG
129 CCTGCTGCCACAACCCTCAATCCAGTCTGACCTTAGACTGTGAATGAACTCCGTATG
3646570 C
1 C
3646571 CTAAGCCAAC
Statistics
Matches: 158, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
184 6 0.04
185 152 0.96
ACGTcount: A:0.25, C:0.27, G:0.28, T:0.20
Consensus pattern (185 bp):
CTTAGACTGGGAATGAACAACATATCAATAAGTCAACCCAAGAAACGAGCGTGCAAGGGCTCAGC
CAGCCAGAGGGGCAGGATGAGCAAGCCAGGGAACGACCGGGTCCCCCTCTACGTGCTATCAATCC
TGCTGCCACAACCCTCAATCCAGTCTGACCTTAGACTGTGAATGAACTCCGTATG
Found at i:3647292 original size:26 final size:26
Alignment explanation
Indices: 3647263--3647314 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
3647253 CTGGTCCGAT
*
3647263 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3647289 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3647315 TCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3648199 original size:26 final size:26
Alignment explanation
Indices: 3648160--3648212 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3648150 GTGATCCGAT
*
3648160 CTTAGATTGCGAATGAACTCTGTATG
1 CTTAGATTGCGAATGAACTCCGTATG
*
3648186 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGCGAATGAACTCCGTATG
3648212 C
1 C
3648213 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGATTGCGAATGAACTCCGTATG
Found at i:3648296 original size:897 final size:897
Alignment explanation
Indices: 3646356--3649952 Score: 4486
Period size: 897 Copynumber: 4.0 Consensus size: 897
3646346 GGTCCAGTCT
* ** **
3646356 GATCTTAGATTAG-GAATGAACTCCGTATGCTTAGACTGGGAATGAAAACCGTATGAATAAGTCA
1 GATCTTAGACT-GCGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * *
3646420 ACCCACGAAACGAGCGTGTGGGGGCTCGGCC-AGCCAGAGGGGCAGGATGAGCAAGCTGGTGAAC
65 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA-CCAGAGGGGCGGGATGCGCAAGCTGGGGATC
** * * ** ** * *
3646484 GGTCGGGTCCCCCTCTACGTGCTTTCAATCCTGCTGCCGCAACCCTCAATCTGGTCTGACCTTAG
129 GGTCGGGTCCCCCTCTACGTGCTACCAATCCTACTGCCACAACCCTCGGTCTAATCCGATCTTAG
* * ** *
3646549 ACTGTGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAAG-TGGACGGGCGGGCGGG
194 ACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGG-CGGGCGGG-GGG
* * * * * * *
3646613 CACTACATCAGCCGGAGAGATGGGATGTGCAAGCCGTGGATCGATAAGGTGGCAGGTGGGTTTAG
257 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
** *
3646678 GCACATCTTCATATTTCTGCATGTGAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCC
322 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* **
3646743 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACAATTTTTGAAAC
387 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * *
3646808 TTTTTA-TGGTTCGGGATCTCTTAAAATTTTTTTGGAAAGATTTTTGGCCCCAAACTTGGTAGAC
452 TTTTTACT-GTTCGGGATTTTTTAAAATTTTTTCGGAAAGA-TGTT---CCCAAACTTGGTAGAC
*
3646872 GTGATCCTTGTATTTTTATTGGCATGCAT-AAAAAATTTAGCTAAAAACTCGAAGTGTACAAGAT
512 GTGATCCTTGTATTTTTATTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * *
3646936 TTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGAAACTTTAATGGCTACTGGTAGCAAACCTA
577 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
3647001 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGAGATAGGGGGCCAA
642 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
3647066 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGGCCCCCCCGAT
707 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCCGG-CCCCCCGAT
* * * * *
3647131 CGCCTGAATCCCAATGTCGCCA-GTCAGGTTCTCCGGCGATGCTCCGACGATTGTGCCCCAGA-G
771 CGCCGGAACCCCAATGCCG-CAGGTCAGGTTCTCCGGCGATGCTCTGACGATGGTGCCCC-GACG
* * * *
3647194 AAGAAAAATGCGGCTCCAGCACATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTC
834 AAGAAAAATGCGGCACCAGCAAATGCCCGAGCCCAGCATGTGCTGCTGCAA-CCTCGGT-TGATC
3647259 C
897 C
* * *
3647260 GATCTTAGACTGGGAGTGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGTCTAAGTCAA
1 GATCTTAGACTGCGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * *
3647325 CCCATGAAACGAGCATGCGGGCGCTCAGCCAACCAGAGAGGCGGGATGCACAAGCTGGGGATTGG
66 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCTGGGGATCGG
* * * * *
3647390 -CTGGGTCCCCCTCTGCATGCTACCAATCCTACTGCCACAACCTTTGGTCCAATCCGATCTTAGA
131 TC-GGGTCCCCCTCTACGTGCTACCAATCCTACTGCCACAACCCTCGGTCTAATCCGATCTTAGA
* *
3647454 CTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGTGGACGGGTGGGCA
195 CTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGG-GGGCA
*
3647519 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGG
259 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * * *
3647584 ACAACTTCATATTTCCGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAGAATGGTCCCTT
324 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * *
3647649 AAGCCTTCATGTGAAGTTTCATGGCAAGACGGCTAGTTTTCTATTTTTCATGATTTTTGAGACTT
389 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
* * *
3647714 TTTACTGTTCGGGATTTTTAAAAATTTTTTCGGAAGGA-G-TCCC-AACTTGGTAGACATGATCC
454 TTTACTGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATGTTCCCAAACTTGGTAGACGTGATCC
3647776 TTGTATTCTTT-TTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
519 TTGTATT-TTTATTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * *
3647840 ACCATTTGAAAAAAATGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGTAAACCTGTAAAAT
583 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
3647905 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGTGGGATAGGGGGCCAATATAAG
648 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * *
3647970 GGCCAGGTACCAGCATCCATCACACATCATGTGCGCACACCCCCCCCGACCCCCCGATCGCCGAA
713 GGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCCGGCCCCCCGATCGCCGGA
3648035 ACCCCAATGCCGCAGGTCAGGTTCTCCGGCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAAT
778 ACCCCAATGCCGCAGGTCAGGTTCTCCGGCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAAT
* *
3648100 GCGGCACCAGCAAATGCCCGAGCCCAGCAAGTGCTGCCT-CAACGCTCGGGGTGATCC
843 GCGGCACCAGCAAATGCCCGAGCCCAGCATGTGCTG-CTGCAAC-CTC-GGTTGATCC
* * *
3648157 GATCTTAGATTGCGAATGAACTCTGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGCGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
3648222 CCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCAGAGGGGTGGGATGCGTAAGCCGGGGATCGG
66 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCTGGGGATCGG
* * * * * *
3648287 TCGGGTCCCCCTCTACGTGCTGCCGATCCTATTGCCACAACCCTTGGTCTGATCCGGTCTTAGAC
131 TCGGGTCCCCCTCTACGTGCTACCAATCCTACTGCCACAACCCTCGGTCTAATCCGATCTTAGAC
* * *
3648352 TGGGAATAAACTCCATATCCCTAAGCCAACCGACGAAACGAGCGGGC-GGACGGGTGGGGGGGCA
196 TGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGG-CGGG-CGGGGGGCA
* * * *
3648416 CAACGTCGGCCAGAGAGACGGGACGCTCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
259 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * * * * * *
3648481 ATATCTTCATATTTCTACGTGCCAATGCCATTTTTGTGGCTTGTAAAGTCATACAATTGTCTCTT
324 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
*
3648546 AAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
389 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
* * * * *
3648611 TTTGCGGTTTGGGATTTTTTAAAATTTTTTC-GAATGGAATTTTGTTCCCAAACTTGGTGGACGT
454 TTTACTGTTCGGGATTTTTTAAAATTTTTTCGGAA-AG-A---TGTTCCCAAACTTGGTAGACGT
* * * * * *
3648675 GATCCTTGTATTTTTCTTGGCATGCAAAAAAAAAGTCACCTAAAAACTCAAAGTGTACACGATTT
514 GATCCTTGTATTTTTATTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
3648740 TGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG-AAACCTGTA
579 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
3648804 AAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTAGAGGTTTGATGAGGGGTAGGGGGCCAACA
644 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
** * * *
3648868 TAAGGG-CAAGTACCAGCACCCATCATGCATCATGTGCGCACA--CCCGCTGGCCCCCCGATCGT
709 TAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCCGGCCCCCCGATCGC
* * * *
3648930 TGGAACCCCAATGCCATC-GGTCAGGTTCT-C--C-A-------ACGATAGTGCCCCGATGAAGA
774 CGGAACCCCAATGCC-GCAGGTCAGGTTCTCCGGCGATGCTCTGACGATGGTGCCCCGACGAAGA
* * *
3648983 AAAATGCGACACCAGCACATGCCCGAGCCCAGCATG-G--GCTG----C-C-G-T-AACC
838 AAAATGCGGCACCAGCAAATGCCCGAGCCCAGCATGTGCTGCTGCAACCTCGGTTGATCC
***
3649032 ---C-T---C-G-GTCCG-A-TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGCGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
3649084 CCCACGAAACGAGCGTGCGGGCGCTCAGTCGGA-CAGAGGGGCGGCATGCGCAAGTTGGGAATCG
66 CCCACGAAACGAGCGTGCGGGCGCTCAG-CCGACCAGAGGGGCGGGATGCGCAAGCTGGGGATCG
* * * * * * * *
3649148 GTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCGGTTTAGTCTGATCTTAGA
130 GTCGGGTCCCCCTCTACGTGCTACCAATCCTACTGCCACAACCCTCGGTCTAATCCGATCTTAGA
* * * * * *
3649213 CTGGGAATAAACTCCGTATGCCTAAGCCAACCGACAAAATGAGCGGGCGGGCGGGTGGGCGGCCC
195 CTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGGGGCAC
* * * *
3649278 TACGTCGACCAAAGGGACGGGATGCGCAAACCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
260 TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* *
3649343 CATCTTCGTATTTCTGCATGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTA
325 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
3649408 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTCGAAACTTT
390 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
* * * *
3649473 TTAC-GATTCGAGATTTTTTAAAATTTTTTCGGAAAGAGTTTTTGAACCAAACGTGGTAGACGTG
455 TTACTG-TTCGGGATTTTTTAAAATTTTTTCGGAAAGA--TGTT--CCCAAACTTGGTAGACGTG
* * * * * *
3649537 ATTCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCAAAAAACTCGAAGTGTGCAAGATTTT
515 ATCCTTGTATTTTTATTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * * *
3649602 GTGACCATTTGAAAAAAGTGTCCCTATTTTAGACACTTTAATGGCTACTGCCAGCAAACTTGTAA
580 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
3649667 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
645 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * ** *
3649732 AAGGGCAAAGTACCAGCACCAATCGTACATCATGTGCGCAAACCCCCCCCCCGGCCCCCTCGATC
710 AAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGC--ACACCCCCCCCGGCCCCC-CGATC
* * * * * * *
3649797 ACCGGAACCACAATGTCACCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCAACGAAG
772 GCCGGAACCCCAATGCCGCAGGTCAGGTTCTCCGGCGATGCTCTGACGATGGTGCCCCGACGAAG
* * * *
3649862 AAAAATGCGGCACCAGCACAA-GCTCGAGCCCAGCATGTGTTGCTGCAACCTTGGTTTGATCT
837 AAAAATGCGGCACCAGCA-AATGCCCGAGCCCAGCATGTGCTGCTGCAACCTCGG-TTGATCC
* *
3649924 GATCTTAGACTGGGAATGAACACCGTATG
1 GATCTTAGACTGCGAATGAACTCCGTATG
3649953 AATAAGTCAA
Statistics
Matches: 2330, Mismatches: 285, Indels: 155
0.84 0.10 0.06
Matches are distributed among these distances:
859 4 0.00
860 2 0.00
861 331 0.14
862 219 0.09
863 53 0.02
864 32 0.01
865 1 0.00
866 4 0.00
867 1 0.00
868 12 0.01
869 28 0.01
870 1 0.00
871 1 0.00
872 2 0.00
873 1 0.00
875 3 0.00
876 1 0.00
877 1 0.00
879 1 0.00
880 49 0.02
881 2 0.00
883 4 0.00
884 2 0.00
885 1 0.00
887 2 0.00
888 52 0.02
889 1 0.00
891 1 0.00
892 2 0.00
895 2 0.00
896 12 0.01
897 573 0.25
898 222 0.10
899 41 0.02
900 2 0.00
901 35 0.02
902 48 0.02
903 41 0.02
904 536 0.23
905 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (897 bp):
GATCTTAGACTGCGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCTGGGGATCGG
TCGGGTCCCCCTCTACGTGCTACCAATCCTACTGCCACAACCCTCGGTCTAATCCGATCTTAGAC
TGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGGGGCACT
ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
TACTGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATGTTCCCAAACTTGGTAGACGTGATCCTT
GTATTTTTATTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
CAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCCGGCCCCCCGATCGCCGGAACC
CCAATGCCGCAGGTCAGGTTCTCCGGCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCG
GCACCAGCAAATGCCCGAGCCCAGCATGTGCTGCTGCAACCTCGGTTGATCC
Found at i:3650115 original size:26 final size:26
Alignment explanation
Indices: 3650086--3650137 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
3650076 CCGGTCTGAT
* **
3650086 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAAACCGTATG
3650112 CTTAGACTGGGAATGAAAACCGTATG
1 CTTAGACTGGGAATGAAAACCGTATG
3650138 AATAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAAACCGTATG
Found at i:3650244 original size:185 final size:185
Alignment explanation
Indices: 3649927--3650297 Score: 530
Period size: 185 Copynumber: 2.0 Consensus size: 185
3649917 TTGATCTGAT
* * *
3649927 CTTAGACTGGGAATGAACACCGTATGAATAAGTCAACCCATGAAATGAGCGTGTAAGGGCCCAGC
1 CTTAGACTGGGAATGAAAACCGTATGAATAAGTCAACCCACGAAACGAGCGTGTAAGGGCCCAGC
* * * * *
3649992 TGACCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTACGTGCTGTCGATCC
66 AGACCAGAGGGGCAGGATGCGCAAGCCAGGGAACGGCCGGGTCCCCCTCTACGTGCTGCCAATCC
* *
3650057 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATG
131 TGCTGCCACAACCCTCGGTCCGGTCTGACCTTAGACTGGGAATGAACTCCGTATG
** * *
3650112 CTTAGACTGGGAATGAAAACCGTATGAATAAGTCAACCCACGAAACGAGCGTGTTGGGGCTCGGC
1 CTTAGACTGGGAATGAAAACCGTATGAATAAGTCAACCCACGAAACGAGCGTGTAAGGGCCCAG-
* *
3650177 CAG-CCAGAGGGGCAGGATGCGCAAGCC-GGTGAACGGCCGGGTCCCCTTCTATGTGCTGCCAAT
65 CAGACCAGAGGGGCAGGATGCGCAAGCCAGG-GAACGGCCGGGTCCCCCTCTACGTGCTGCCAAT
** * *
3650240 CCTGCTGCCGTAACCCTCGGTCTGGTCTGACCTTAGACTGTGAATGAACTCCGTATG
129 CCTGCTGCCACAACCCTCGGTCCGGTCTGACCTTAGACTGGGAATGAACTCCGTATG
3650297 C
1 C
3650298 CTAAGCCAAC
Statistics
Matches: 164, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
184 2 0.01
185 160 0.98
186 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.30, T:0.20
Consensus pattern (185 bp):
CTTAGACTGGGAATGAAAACCGTATGAATAAGTCAACCCACGAAACGAGCGTGTAAGGGCCCAGC
AGACCAGAGGGGCAGGATGCGCAAGCCAGGGAACGGCCGGGTCCCCCTCTACGTGCTGCCAATCC
TGCTGCCACAACCCTCGGTCCGGTCTGACCTTAGACTGGGAATGAACTCCGTATG
Found at i:3651796 original size:26 final size:26
Alignment explanation
Indices: 3651760--3651816 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
3651750 TTGGTCTGAT
3651760 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
3651786 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
3651812 CTTAG
1 CTTAG
3651817 GTCAACCCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3653311 original size:26 final size:26
Alignment explanation
Indices: 3653273--3653325 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3653263 CCGGTCCGAT
*
3653273 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
3653299 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
3653325 C
1 C
3653326 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:3654953 original size:26 final size:26
Alignment explanation
Indices: 3654913--3654963 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3654903 CTAATCTGAT
*
3654913 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3654939 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
3654964 CCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3654997 original size:734 final size:733
Alignment explanation
Indices: 3653458--3655039 Score: 2215
Period size: 734 Copynumber: 2.1 Consensus size: 733
3653448 CTGGTCTGAT
* * * * * *
3653458 CTTAGACTGGCAATGAACTCCGTATGCCTAAGCCAACCGATGAAAGGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATCCCTAAGCCAACC-A--CAACGAAC-GGCAGGCGGGCGGG
3653523 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTCGTAGGTGGGT
62 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTCGTAGGTGGGT
* * **
3653588 GGGTTCAGGCACATCTTTATATTTCTGTGTGCCAATTTCATTTTTATGGCTTGTAAATTCATACA
127 --GTTCAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * *
3653653 ATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTGACAATT
190 ATGGCCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACAATT
* * * * *
3653718 TTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATTATTTCGGAAGGATTTTTGGGCCCAAACTT
255 TTTGAAACTTTTTACGGTTTGAGATTGTTTAAAATTATTTCGGAAGCAGTTTTGGGCCCAAACTT
3653783 GGTAGACATGATCCTTGTACTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
320 GGTAGACATGATCCTTGTACTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
3653848 CCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTTGCAGC
385 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGC
* * * * ** *
3653913 AAACCTGTAAAATCTGAAATGCTCTTTATGGGTGTGTGGGTTCTTGAGGTTTGATGAGGGATAGG
450 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTCGATGAGGGATAGG
3653978 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCAGGCCC
515 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCAGGCCC
* * * *
3654043 CCTCGATCGCAGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGGCGAAGAAA
580 CCCCGATCGCAGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAA
* **
3654108 AATACGGCACCAGCAAATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCACTCT
645 AATACGGCACCAGCAAATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTAATCCACTCT
*
3654173 TAGACTGGGAATGAAATCCGTTTG
710 TAGACTGGGAATGAAATCCGTATG
* *
3654197 CTTAGACTGGGAATGAACTCCGTATGCCTAGGCCAACCGACAAAACGAACGGGCAGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATCCCTAAGCCAACC-AC--AACGAAC-GGCAGGCGGGCGGG
* *
3654262 CGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
62 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTCGTAGGTGGGT
* *
3654327 -TT-AGGTACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCGTACAAT
127 GTTCAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
3654390 GGCCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
192 GGCCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACAATTTT
* * *
3654455 TGAAACTTTTT-CGGTTTGAGATTGTTTAAAATTTTTTCGGAAGCAGTTTTGGTCCCAAAGTTGG
257 TGAAACTTTTTACGGTTTGAGATTGTTTAAAATTATTTCGGAAGCAGTTTTGGGCCCAAACTTGG
* * *
3654519 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
322 TAGACATGATCCTTGTACTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
3654584 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGAAGCAA
387 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAA
*
3654649 ACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTCGATGAGGGATAGGGG
452 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTCGATGAGGGATAGGGG
* *
3654714 GCCAATATAAGGGCCAAGTACCAGCATCCATCACACATCATGTGCGCATA-CCCCCCA-GCCCCC
517 GCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCAGGCCCCC
*
3654777 CCGATCGTC-GGAACCCTAATGCCGCCAGTCAGGTTCTCCGACGATGCTTCGACATGGTGCCCCG
582 CCGATCG-CAGGAACCCCAATGCCGCCAGTCAGGTTCT-C--CGA-----CG--ATGGTGCCCCG
* * * * *
3654841 ACGAAGAAAAATGCGGCACTAGCACATGCCCGAGCCTAGCATGTGCTGCCGTAACCCTCGATCTA
636 ACGAAGAAAAATACGGCACCAGCAAATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTA
* * *
3654906 ATCTGA-TCTTAGACTGGTAATGAACTCCGTATG
701 ATC-CACTCTTAGACTGGGAATGAAATCCGTATG
* *
3654939 CTTAGACTGGGAATGAACTCCGTATCCCTAAGTCAACC-C-ACGAAAC-G-A-GCGTGCGGGC--
1 CTTAGACTGGGAATGAACTCCGTATCCCTAAGCCAACCACAACG-AACGGCAGGCGGGCGGGCGG
* * * *
3654997 GCTC-A-GCCGGCCAGAGGGACGGGATGCACAAGCCGGGGATCGA
65 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
3655040 CCGGGTCTCT
Statistics
Matches: 757, Mismatches: 71, Indels: 39
0.87 0.08 0.04
Matches are distributed among these distances:
730 34 0.04
731 1 0.00
732 40 0.05
733 9 0.01
734 282 0.37
735 129 0.17
736 3 0.00
737 3 0.00
738 3 0.00
739 120 0.16
740 3 0.00
742 129 0.17
743 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (733 bp):
CTTAGACTGGGAATGAACTCCGTATCCCTAAGCCAACCACAACGAACGGCAGGCGGGCGGGCGGG
CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTCGTAGGTGGGTGTTC
AGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGCC
CCTTAAGCATTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACAATTTTTGAA
ACTTTTTACGGTTTGAGATTGTTTAAAATTATTTCGGAAGCAGTTTTGGGCCCAAACTTGGTAGA
CATGATCCTTGTACTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTCGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCAGGCCCCCCCGA
TCGCAGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATACG
GCACCAGCAAATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTAATCCACTCTTAGACT
GGGAATGAAATCCGTATG
Found at i:3655853 original size:26 final size:26
Alignment explanation
Indices: 3655817--3655868 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
3655807 CTGGTCCAAT
3655817 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3655843 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3655869 TCTAAGCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3656245 original size:903 final size:900
Alignment explanation
Indices: 3654197--3664715 Score: 12571
Period size: 904 Copynumber: 11.9 Consensus size: 900
3654187 AATCCGTTTG
* * * *
3654197 CTTAGACTGGGAATGAACTCCGTATGCCTAGGCCAACCGACAAAACGAACGGGCAGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--G-AGGCGGG
* *
3654262 CGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
63 CGGGCACTACTCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
3654327 TTAGGTACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCGTACAATGG
128 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
3654392 CCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
193 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTA
* * * * *
3654457 AAACTTTTT-CGGTTTGAGATTGTTTAAAATTTTTTCGGAAGCAGTTTTGGTCCCAAAGTTGGTA
258 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
*** *
3654521 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
323 GGTATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
3654586 GATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGAAGCAAAC
388 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
3654651 TTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTCGATGAGGGATAGGGGGC
453 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
3654716 CAATATAAGGGCCAAGTACCAGCATCCATCACACATCATGTGCGCATACCCCCCAGCCCCCCCGA
518 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
* ** *
3654781 TCGTCGGAACCCTAATGCCGCCAGTCAGGTTCTCCGACGATGCTTCGAC-ATGGTGCCCCGACGA
583 TCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGA
* * * * ** *
3654845 AGAAAAATGCGGCACTAGCACATGCCCGAGCCTAGCATGTGCTGCCGTAACCCTCGATCTAATCT
648 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCC
* *
3654910 GATCTTAGACTGGTAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATCCCTAAGTCAA
713 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* *
3654975 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGACGGGATGCACAAGCCGGGGATCGA
778 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * * * * * * * * * **
3655040 CCGGGTCTCTCTCTGCTTGCTGCCGATCCTGCTACCACAA-CCGTCGATCTGATCCAAT
843 TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTAGTTC-GGTCTGAT
* *
3655098 CTTAGACTGTGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--G-AGGCGGG
* * * * * *
3655163 CGGGCACTACGT-CGGCCAGAAAAATGGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGAG
63 CGGGCACTAC-TCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
3655227 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAGTTTTATGGCTGGTAAATTTATACAATG
127 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
3655292 GTCCCTTAAGCCTTCATGTGAAGTTTCATAGCAAGACGACTCGTTTTCTATTTTTCACGTTTTTT
192 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
3655357 GAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGT
257 AAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
3655422 AGGTATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
322 AGGTATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
3655487 AGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGACTACTGGCAGCAAA
387 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
** * ** * *
3655552 CCTGTAAAATCTCAAATGCTCTTTAAGGAAGTGTGAGTTTTTAAGGTTTGATGAGGGATAGGAGA
452 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
3655617 CCAGTATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCTTGCCCCCCC
517 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCC
* * *
3655682 GATTGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGAC
581 GATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* * **
3655747 AAAGAAAAATGCGGCACCAGAACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAATCTGGT
646 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
* * * *
3655812 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGTCTAAGCC
711 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * *
3655877 AACCAACGAAACGAGCGTGCGGGTGC-CAAGCTGGCCAGAGGGGCAGGATGCGCAAGCTGGGGAT
776 AACCCACGAAACGAGCGTGCGGGCGCTC-AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* *
3655941 CGGTCGGGTCCCCCTCTGCGTGCTG-CGATCCTGCTGCCACAACCCTTAGTTCGGTCTGAT
840 CGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTAGTTCGGTCTGAT
** *
3656001 CTTAGACTACGAATGAACTCCGTATGCCTAAGCCAACC-ATCGAAACGAGCGGGCCAGAAGGTGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-CGAAACGAGCGGG-C-G-AGGCGG
** * * *
3656065 GTAGGCACTACTCCGGGCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTTGG
62 GCGGGCACTACTCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* ** * *
3656130 TTTAGGCACATCTTCATATTTCTGCATGCCCATGGTATTTTGATGGCTTGAAAATTCATACAATG
127 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
**
3656195 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTT
192 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
3656260 AAAACCTTTTACAGTTC-AGGATTTTTCAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGG
257 AAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
** * *
3656324 TAGACATGACCCTTGTATTTTTTTTAGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
321 TAGGTATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
3656389 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACGGGCAGCAA
386 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
3656454 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
451 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
** *
3656519 GCCAATATAAGCACCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCTCCCTCGGCCCCC
516 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCC-CGGCCCCC
* * * **
3656584 CCGATCGTCGGAACCCCAATGCCGCCGGTCAAGTTCTCCAACGATGCTCCGACGATGGTGCCTTG
579 CCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
* * * * *
3656649 ACGAAGAAAAATGCGGCACCTGCACATGCCCGAGCCCAGCATGTGTTGCTGCAACCTTCGGTTTG
644 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
** *
3656714 GTTTGATCTTAGACCGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
709 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
3656779 TCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGC--GA-GTGC-TGCC---GA
774 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * *
3656837 TC---C---T---GCTAC--C--G-T---GA-CC--CT--CG--ATCC---G---GTTC-GAT
839 TCGATCGGGTCCCCCT-CTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTAGTTCGGTCTGAT
* * * *
3656869 CTTAGACTAGGAATGAACTCCGTACGCCTAAGCCAACTGACGAAACGAGCAGGCAGAAGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-G-A-GGCGGG
* * * *
3656934 CAGGTGGGCACTACGCCGGCCAGAGAGACGGGATACGCAAGCCATGGATCGATACGGTGGTAGGT
63 C----GGGCACTACTCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
3656999 GAGTTTAGGCACATCTTCATATTTATACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
124 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * * * * *
3657064 ATTGTCCCTTAAGGCTTTACGCGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCATGATT
189 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* *
3657129 TTTAAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
254 TTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* *
3657194 AGT-GG-ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGT
319 GGTAGGTA--TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * * *
3657257 GTACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTAGAA
382 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
3657322 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
447 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * *
3657387 GGGGGCCACTATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGTGCACACCCCCC-GACC
512 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
* * * *
3657451 CCCCGATCGACGAAACCCCAATACCGAC-GGTCA---------A-G-TTCTCCGACGATGGTGCC
577 CCCCGATCGTCGGAACCCCAATGCCG-CTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
* * ** * **
3657504 CCGACGAAGAAAATTGTGGCACCAGCACATTACCGAGCCCAGCATGTGCTGCCGTAACTATCGGT
641 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * * ** *
3657569 CTTGTTCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCAATCTGCCT
706 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * *
3657634 AAGTCAACCCACGAAATGAGTGTACGGGCACTCAGCCGGCCAGAGGGGTGGGATGCGTAAGCTGG
771 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* ** ** * *
3657699 GGATCGGTCGGGTCCCCCTCTATGTGCTATCGATCCTACTGTCGCAA-CCTTCAG-TCTGGT-TC
836 GGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTT-AGTTC-GGTCT-
3657761 GAT
898 GAT
*
3657764 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GA--CGGGCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGGCGGGCGG
* * * * *
3657824 GCACTACGCCGGCTAGAGAGACGGGATGAGCAAGCCGTGGATCGACAGGGTGGTAAGTGGGTTTA
66 GCACTACTCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
3657889 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
131 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
3657954 CTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTAAAA
196 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAA
* *
3658019 CTTTTTGCGGTTCGGGATTTTTTAAAA---TTTC-----------T----------TT-GT-GG-
261 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGGT
* * *
3658057 -T--T-C---TA---GTTTTGGCATGCACAAAGAAATTCAGCTAAAAACTTGAAGTGTACAAGAT
326 ATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
3658112 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTG
391 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * * *
3658177 TAAAATCTCAAATGCACTTTAAGGGGGAGTGAGTTGTCGAGGTTTGATGAGAGATATGGGGCCAA
456 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * **
3658242 TATAAGGGCCAAGTACCAGCTCCCATTGCACATCATGTGCGCACTGCCCACCCCCCAGCCCCTTC
521 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-----CACCCCCCGGCCCCCCC
** * * * *
3658307 GATCACCGGAACCCCAATACCGCCGGTTAGGTTCTCCGACGATACTCC-AGCGATGGTGCCCCGA
581 GATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGA
* * **
3658371 CGAAGAAAAATACGTG-AACAGCACATGCCCGAGCCCAGCATGTGCTGTTGCAA-CC-C--TC-G
645 CGAAGAAAAATGCG-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
3658430 GTCCGATC----AC------T----T-CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
709 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * ** * * * *
3658480 TCAACCCATGAAACGAGCATGCAAGTGCTCAGCCGGCCAGAGGGGCCGGATGCGCAAGCTGAGGA
774 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * * * * *
3658545 TC-AGCCTGGTCCCCTTCTGCATGCTGCCGATCTTGCTGCCGCAACCC-TCGATCCAGTCTGAT
839 TCGA-TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTAG-TTCGGTCTGAT
* * * *
3658607 CTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACTGACGAAACAAGCGGTTGGGCG-GGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC----GGGCGAGGCGG
* * *
3658671 GCGGGCTCTACGT-CGACCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGG
62 GCGGGCACTAC-TCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
3658735 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTTATACAAT
126 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
3658800 TGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
191 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * *
3658865 CAAAACTTTTTACGGTTCAAGATTTTTTTAAATTTTTTCGGAAGGAGCTTTGGCCCCAAACTTGG
256 TAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
** * * * * ** *
3658930 TAGACATGATCCTTGTATTTTTTTTGGCGTGGACAAAAAATTTTAGCTAAAAACAAGAAATGTAC
321 TAGGTATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
3658995 AAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATTGCTACTGGCAGCAA
386 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
3659060 ACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGATTGATGAGGGATAGGGG
451 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
3659125 TCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACGCCCCCTCTGG-CC
516 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCC-C-GGCCC
* * * * * *
3659189 CCCAGATCGTCGGAACCCCAATGTCG-TCAGTCAGGTTCTCCAACGATGCTCTGGCGATGGTGCC
577 CCCCGATCGTCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
** * * * * *
3659253 CCGACGAAGAAAAATATGACACCAGCACATGGCCGAGCCCAGCACGTGCTGTCGTAACCCTCGGT
641 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
*
3659318 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATCAACTCCGTATGCCT
706 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * ** * * *
3659383 AAGTCAACCCATGAAACGAGCGTGAGGGCTCTCA-TTGGCCAGAGGGGCGAGATACGTAAGCCGG
771 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * * * *
3659447 GGATCGATCGGGTCCCCCTCTGCATGCTGCCAATCCTGTTGTCACAA-CCTTCGATCTGATCTGA
836 GGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTAGTTC-GGTCTGA
3659511 T
900 T
* *
3659512 CTTAGACTAGGAAT-ATACTCCGTATGCCTAACCCAACCGACGAAACGAGCGGGCG-GGCGGGCG
1 CTTAGACTGGGAATGA-ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGGCGGGCG
* * * *
3659575 GGCACTACGT-CGACCAGAGAGATGGGATGCGCAAGCCGTGTATCGATAGGGTGGTAGGTAGGTT
65 GGCACTAC-TCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
3659639 TAGGCACATCTTCATATTTTTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGT
129 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
3659704 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTCTCTATTTTTCACGATTTTTGA
194 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAA
* * *
3659769 AACTTTTTGCTGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTA
259 AACTTTTTAC-GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
3659834 GACG-A-GATCCTTGTATTTTTTTTGGCGTGCACAAAAACATTCAGCTAAAAACTTGAAGTGTAC
323 G--GTATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
3659897 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGACTACTGGCAGCAA
386 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * ** * *
3659962 ACCTGTAAAATCTCAAATGCTTTTTAAGGAGGTGTGAGTTTTTAAGGTTTGATGAGCGATAGGAG
451 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
3660027 ACCAGTATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCC
516 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCC
* * * *
3660092 CGATTGTTGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGA
580 CGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA
* * ** * *
3660157 CAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAATCCGA
645 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGG
* * * *
3660222 TCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGTCTAAGC
710 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
3660287 CAACCAACGAAACGAGCGTGCGGGTGC-CAAGCTGGCCAGAGGGGCAGGATGCGTAAGCCGGGGA
775 CAACCCACGAAACGAGCGTGCGGGCGCTC-AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * *
3660351 TCGGTCGGGTCCCCCTCTGCGTGCTG-CGATCCTGCTGCCACAACCCTCAGTTCGGTCTGAT
839 TCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTAGTTCGGTCTGAT
** * *
3660412 CTTAGACTATGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCCGAAAGGTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG-CG--AGGCGGG
** * * *
3660477 TAGGCACTACTCCGGGCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTTGGT
63 CGGGCACTACTCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* ** *
3660542 TTAGGCACATCTTCATATTTCTGCATGCCCATGGTATTTTGATGGCTTGTAAATTCATACAATGG
128 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
**
3660607 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTA
193 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTA
* * * * * *
3660672 AAACCTTTTACAGTTC-AGGATTTTTCAAAATTTTTTTGGAAGGATTTTTTGCCCCAAACTTGGT
258 AAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
3660736 AGACT-TGACCCTTGTATTTTTTTTAGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
322 AG-GTATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
3660800 AAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
386 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
3660865 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
451 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
** * *
3660930 GCCAATATAAGCACCAAGTACCAGCACCCATCGCACATCGTGTGTGCACACCTCCCTCGGCCCCC
516 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCC-CGGCCCCC
* * * **
3660995 CCGATCATCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGACGATGCTCCGACGATGGTGCCTTG
579 CCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
* * * * * *
3661060 ACGAAGAAAAATGTGGCACCTGCACATGCCCGAGCCCAGCATGTGTTGCTGCAACCTTCGAT-TC
644 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT-
*
3661124 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
708 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
3661189 GTCAACCCACGACATGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCGAGATGCGCAAGCCGGGG
773 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * ** * *
3661254 ATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCTGTGACCC-TCGATCCGGT-TCGAT
838 ATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTAG-TTCGGTCT-GAT
* * *
3661317 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACGGACGAAACGAGCGGGCG-GGCGGGCGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGGCGGGCGG
* * * *
3661381 GCACTACGCCAGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGGTAGGGTGGTAGGTGGGTTTA
66 GCACTACTCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
**
3661446 GGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
131 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * *
3661511 CTTAAGTCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAA
196 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAA
* * *
3661576 CTTTTTGCGGTTCGGGATTTTTTAAAATTTCTTT-GGAAGGAGTTTTGG-CCCAAACTTGGTAGA
261 CTTTTTACGGTTCGAGATTTTTTAAAATTT-TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGG
* * * * * *
3661639 TGTGGTCCTTGTA-TTTTTTTGGCTTGCACAAAAAAATTCAGGTAAAAACCCGAAGTGTAGAAGA
325 TATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
3661703 TTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTAGCAGCAAACCT
390 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
3661768 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
455 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * *
3661833 ATATAAAGGCCAAGT----------A-C-CACATCATGTGCGTACACCCACCCCGGCCCGCCCGA
520 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CCCCGGCCCCCCCGA
*
3661886 TC-TCCGGAACCCCAATACCG-TCGGTCAGG---T-------T-CTCCGACGATGGTGCCCCGAC
583 TCGT-CGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* * * * ** *
3661938 AAAGAAAAATGCGGCACCAGCACATGCTCGAGCCTAGCATGTGCTGCTGCAACCCTCGGTCCAGC
646 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
* * * * *
3662003 CCGATCTTAGGCTTGGAATGAACTCCATATGCTTAGATTGGGAATGAACTCTGTATGCCTAAGTC
711 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
3662068 AACCCACGAAATGAGCGTGTGGGCGCTCAGCTGGCCAGAGGGGCGGGGTGCACAAGTCGGGGATC
776 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * **
3662133 GGTCGGGT-CCCCTGCTGCGTGCTGTCGATCCTGCTGCCGTAACCCTTGGTTTGGTCCAAT
841 GATCGGGTCCCCCT-CTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTAGTTCGGTCTGAT
* * * *
3662193 CTTAGACTGGAAATGAATTCTGTATGCCTAAGCCAACCGACG-AA--A-----CGA-GCGGGCTG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGGCGGGCGG
* * *
3662249 GCACTACGCCGGCCAGAGCGACGGGATGCGCAAGCCGTGGATCGATAGGGTAGTAGGTGGGTTTA
66 GCACTACTCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * *
3662314 GGCACAACTTCATATTTCTACGTGCCAATGCCATTTTT-TGGCTTGTAAATTCATACAATGGTCC
131 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
3662378 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
196 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAA
* * *
3662443 CTGTTTACGGTT-TAGGATTTTTTAAAATTTCTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
261 CTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG-
* ** * * * * *
3662507 CGTA--ATCCTTGCATTTTTTTTGGCATATAAAAAAAAATTCAGTTAGAAACTCAAAGTCTACAA
324 -GTATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
3662570 TATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
388 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
3662635 CTATAAAATCTCAAATCCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
453 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
3662700 CAATATAAGGGCCAAGTACCATC-CCTCATCGCACATCTTGTGCGCATACCGCCCCCGGCCCCCC
518 CAATATAAGGGCCAAGTACCAGCACC-CATCGCACATCATGTGCGCACA-C-CCCCCGGCCCCCC
** * ** * * *
3662764 CGATCACCAGAACCCCAATGATGCGGGTCAGGTTCTCTGACGATGCTCCGACGATGGTGCCCCGG
580 CGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA
* * *
3662829 TGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGTATGTGCTGCCGCAACCCTCGGTCTGG
645 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGG
* * * *
3662894 TCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGGAGTGAACTCCGTATGCCTAAGT
710 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
3662959 GAACCCACGAAACGAGCGTGCAGGCGGTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGAT
775 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * * * * *
3663024 CGATCGGGT-CCCCTGTTGCGTGTTGTCGATCCTACTACTGTAACCCTCA-TTCCGGTCCGAT
840 CGATCGGGTCCCCCT-CTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTAGTT-CGGTCTGAT
* * * * *
3663085 CTTAGACTGGGAATGAATTTCGTATGCCTAAGCGAACCGACGAAAC-A-------A-GTGGGCTG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGGCGGGCGG
* * * *
3663141 GCACTACGT-TGGCCAGAGAGATGGGATACGCAAGCCGTGGATCGATAGGATGGTAGGTGGGTTT
66 GCACTAC-TCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * *
3663205 AGGGACATCTTAATATTTCTGCATGCCCAGGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
130 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
3663270 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAA
195 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAA
*
3663335 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
260 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC-T--T-G-
* * * *
3663400 CGTGACTTGGTAGACATGATCCTTCTATTTTTGTTGGCTTGCACAAAAACATTCAGCTAAAAACT
320 -GT-A---GGT----ATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
3663465 CGAACTGTACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCT
376 CGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * *
3663530 ACGGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATG
440 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
3663595 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATTATGTGTGCACACCCC
505 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
*
3663660 CCCGG-CCCCCCGATCGTCGGAACCCCAATGTCGCTGGTCAGG---T-------T-CTCCGACGA
569 CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGA
* * * * * * *
3663713 TGGTGCCTCGATGAAGAAAAATGTGGCACTAGCACATGCCCGAGCCCATCATGTGCTACCGTAAC
634 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * * *
3663778 CCTCGGTCCGGTCCAATCTTAGACTGGGAGTGAACTCCATATGC-----CT----A--AA-T-CG
699 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
** * * * *
3663830 -A--CC-----C-A--CA--AAACGAGCGTGTAGGCGTTCAGCTGGCCAAACGGGCGGGATGCGC
764 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * * * * * * * *
3663882 AAGCCGAGGATCGACCAGGTCTCCCTCTGCGTGCTGTCAATCCTGCTGCCGTAACCCTCAATTTG
829 AAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTAGTTCG
3663947 GTCTGAT
894 GTCTGAT
* * *
3663954 CTTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCGATGAAATGA----GCG-GGCGGGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGGCGGGCGG
* * * *
3664014 GCACTACGT-CGGCCAAAGAGACGAGATGCGCAAGCAGTGGAACGATAGGGTGGTAGGTGGGTTT
66 GCACTAC-TCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* ** *
3664078 ACGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCGTACAATGGTC
130 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
3664143 CCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAA
195 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAA
* * * *
3664208 ACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCGGAAGGATTTTTGGCCCTAGATA-TT-GTA
260 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA-A-ACTTGGTA
** * *
3664271 GACATGATCCTTGTATTTTTGTTGGCATGAACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
323 GGTATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
3664336 GATTTTGGGACCATTTGAAAAAAGTGCCCCCA-TTCTAGACACTTTAATGGCTACTGGCAGCAAA
388 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAA
* * *
3664400 CCTGTAAATTTTCAAATGCTCTTT-AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAGAGGGGG
452 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * * *
3664464 CCAATATAAGGGCCAAGGACCAGCACCCGTCGCACATCATTTGCGCACACCCCTCGGCCTCCCCG
517 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
* * * ** * * **
3664529 ATCGTCGGAACCCCAATGCCG-TCAGTGAGGTTCTTCGGTGATGCTCCGAAGATGTTGCCCCGGT
582 ATCGTCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* * * * * *
3664593 GAAGAAAAATGCGGTACCAGCACTTGCTCGAGCCCAGCATGTGCTACCGCAACCCGCGGTCCGGT
646 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
3664658 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
711 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
3664716 TTAGACTAGG
Statistics
Matches: 8330, Mismatches: 991, Indels: 611
0.84 0.10 0.06
Matches are distributed among these distances:
842 1 0.00
843 169 0.02
844 5 0.00
846 204 0.02
848 1 0.00
849 3 0.00
850 1 0.00
851 217 0.03
852 29 0.00
853 1 0.00
854 6 0.00
855 1 0.00
856 8 0.00
857 116 0.01
858 240 0.03
859 78 0.01
860 4 0.00
861 4 0.00
862 4 0.00
863 62 0.01
864 1 0.00
865 5 0.00
866 3 0.00
867 133 0.02
868 283 0.03
869 345 0.04
870 11 0.00
871 8 0.00
872 456 0.05
873 238 0.03
874 3 0.00
875 13 0.00
876 265 0.03
877 7 0.00
878 1 0.00
879 8 0.00
880 6 0.00
881 59 0.01
882 9 0.00
883 208 0.02
884 8 0.00
885 8 0.00
886 103 0.01
887 59 0.01
888 210 0.03
889 2 0.00
890 4 0.00
891 15 0.00
892 369 0.04
893 143 0.02
894 6 0.00
895 157 0.02
896 2 0.00
897 5 0.00
899 192 0.02
900 299 0.04
901 733 0.09
902 553 0.07
903 854 0.10
904 885 0.11
905 190 0.02
906 94 0.01
907 69 0.01
908 152 0.02
909 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGGCGGGCGG
GCACTACTCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAA
CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGGT
ATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
TCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGA
AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGAT
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTAGTTCGGTCTGAT
Found at i:3656758 original size:26 final size:26
Alignment explanation
Indices: 3656721--3656773 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3656711 TTGGTTTGAT
3656721 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
*
3656747 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
3656773 C
1 C
3656774 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:3659357 original size:26 final size:26
Alignment explanation
Indices: 3659328--3659380 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3659318 CTGGTCCGAT
*
3659328 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
3659354 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
3659380 C
1 C
3659381 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:3660257 original size:26 final size:26
Alignment explanation
Indices: 3660228--3660279 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
3660218 CCGATCCAAT
3660228 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3660254 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3660280 TCTAAGCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3661019 original size:904 final size:899
Alignment explanation
Indices: 3658063--3664715 Score: 8122
Period size: 901 Copynumber: 7.5 Consensus size: 899
3658053 GTGGTTCTAG
* *
3658063 TTTTGGCATGCACAAAGAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAA
1 TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* *
3658128 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCA
66 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * * *
3658193 CTTTAAGGGGGAGTGAGTTGTCGAGGTTTGATGAGAGATATGGGGCCAATATAAGGGCCAAGTAC
131 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * * * ** **
3658258 CAGCTCCCATTGCACATCATGTGCGCACTGCCCACCCCCCAGCCCCTTCGATCACCGGAACCCCA
196 CAGCACCCATCGCACATCATGTGCGCAC--ACC-CCCCTCGGCCCCCCCGATCGTCGGAACCCCA
* * * *
3658323 ATACCGCCGGTTAGGTTCTCCGACGATACTCC-AGCGATGGTGCCCCGACGAAGAAAAATACGT-
258 ATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAAT--GTG
* **
3658386 G-AACAGCACATGCCCGAGCCCAGCATGTGCTGTTGCAA-CC-C--T-CGGTCCGATC----AC-
320 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
*
3658440 -----T----T-CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
385 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* ** * * * * * *
3658495 AGCATGCAAGTGCTCAGCCGGCCAGAGGGGCCGGATGCGCAAGCTGAGGATC-AGCCTGGTCCCC
450 AGCGTGCGGGTGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCC
* * * * * * * *
3658559 TTCTGCATGCTGCCGATCTTGCTGCCGCAACCCTCGATCCAGTCTGATCTTAGATTGGGAATGAA
514 CTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTCG-TTCGGTCTGATCTTAGACTAGGAATGAA
* * * * * *
3658624 CTCCATATGCCTAAGCCAACTGACGAAACAAGCGGTTGGGCGGGCGGGCGGGCTCTACGTCGACC
578 CTCCGTATGCCTAAGCCAACCGACGAAACGAGC----GGGCGGGCGGG-TGGCACTACGTCGGCC
*
3658689 AGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
638 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * *
3658754 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTTATACAATTGTCCCTTAAGCCTTCATG
703 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
**
3658819 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCA
768 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCA
* * * *
3658884 AGATTTTTTTAAATTTTTTCGGAAGGAGCTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATT
833 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACTTGATCCTTGTATT
3658949 TT
898 TT
* * * * ** * *
3658951 TTTTGGCGTGGACAAAAAATTTTAGCTAAAAACAAGAAATGTACAAGATTTTCTGACCATTTGAA
1 TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* * *
3659016 AAAAGTGTCCCCATTTCAAACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAATTGCT
66 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* *
3659081 CTTTAAGGGGGTGTGAGTTCTCGAGGATTGATGAGGGATAGGGGTCCAATATAAGGGCCAAGTAC
131 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
*
3659146 CAGCACCCATCGCACATCATGTGCGCACACGCCCCCTCTGG-CCCCCAGATCGTCGGAACCCCAA
196 CAGCACCCATCGCACATCATGTGCGCACAC-CCCCCTC-GGCCCCCCCGATCGTCGGAACCCCAA
* * * * * * *
3659210 TGTCG-TCAGTCAGGTTCTCCAACGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATATGACA
259 TGCCGCT-GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCA
* * * * *
3659274 CCAGCACATGGCCGAGCCCAGCACGTGCTGTCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGG
323 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGG
* *
3659339 AATGAACTCCGTATGCTTAGACTGGGAATCAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
388 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * *
3659404 GTGAGGGCT-CTCA-TTGGCCAGAGGGGCGAGATACGTAAGCCGGGGATCGATCGGGTCCCCCTC
453 GTGCGGG-TGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTC
* * * * ** * * *
3659467 TGCATGCTGCCAATCCTGTTGTCACAACCTTCGATCTGATCTGATCTTAGACTAGGAAT-ATACT
517 TGCGTGCTGCCGATCCTGCTGCCGTAACCCTCGTTC-GGTCTGATCTTAGACTAGGAATGA-ACT
* * *
3659531 CCGTATGCCTAACCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGACCAGAGAG
580 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG-TGGCACTACGTCGGCCAGAGAG
* * * *
3659596 ATGGGATGCGCAAGCCGTGTATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTTTG
644 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
*
3659661 CATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
709 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * *
3659726 TTCATGGCAAGATGACTCGTTCTCTATTTTTCACGATTTTTGAAACTTTTTGCTGGTTC-GAGAT
774 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC-GGTTCAG-GAT
* * **
3659790 TTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGAGATCCTTGTATTTT
837 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACTTGATCCTTGTATTTT
* * *
3659853 TTTTGGCGTGCACAAAAACATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAA
1 TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* *
3659918 AAAAGTGTCCCTATTTCAGACACTTTAATGACTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
66 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * * ** * * * *
3659983 TTTTAAGGAGGTGTGAGTTTTTAAGGTTTGATGAGCGATAGGAGACCAGTATAAGGGCCAAGTAC
131 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* *
3660048 CAGCACCCATCGCACATCATGTGCGCACACCCCCCT-GGCCCCCCCGATTGTTGGAACCCCAATG
196 CAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATG
* * *
3660112 CCGCTGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGACAAAGAAAAATGTGGCACCA
261 CCGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCA
** * *
3660177 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAATCCGATCCAATCTTAGACTGGGAAT
326 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
* * * *
3660242 GAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGTCTAAGCCAACCAACGAAACGAGCGTG
391 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * *
3660307 CGGGTGC-CAAGCTGGCCAGAGGGGCAGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGC
456 CGGGTGCTC-AGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGC
** *
3660371 GTGCTG-CGATCCTGCTGCCACAACCCTCAGTTCGGTCTGATCTTAGACTATGAATGAACTCCGT
520 GTGCTGCCGATCCTGCTGCCGTAACCCTC-GTTCGGTCTGATCTTAGACTAGGAATGAACTCCGT
* * *
3660435 ATGCCTAAGCCAACCGACGAAATGAGCGGGCCGAAAGGTGGGTAGGCACTAC-TCCGGGCAGAGA
584 ATGCCTAAGCCAACCGACGAAACGAGCGGG-CG---GGCGGGT-GGCACTACGT-CGGCCAGAGA
* *
3660499 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTTGGTTTAGGCACATCTTCATATTTCT
643 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* ** *
3660564 GCATGCCCATGGTATTTTGATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
708 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
** * * *
3660629 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTAAAACCTTTTACAGTTCAGGATT
773 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATT
* * * * *
3660694 TTTCAAAATTTTTTTGGAAGGATTTTTTGCCCCAAACTTGGTAGACTTGACCCTTGTATTTT
838 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACTTGATCCTTGTATTTT
* *
3660756 TTTTAGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAA
1 TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
3660821 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
66 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
**
3660886 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGCACCAAGTAC
131 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * *
3660951 CAGCACCCATCGCACATCGTGTGTGCACACCTCCCTCGGCCCCCCCGATCATCGGAACCCCAATG
196 CAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATG
* * ** *
3661016 CCGCCGGTCAAGTTCTCCGACGATGCTCCGACGATGGTGCCTTGACGAAGAAAAATGTGGCACCT
261 CCGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCA
* * * * * *
3661081 GCACATGCCCGAGCCCAGCATGTGTTGCTGCAACCTTCGATTCGGTCTGATCTTAGACTGGGAAT
326 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
* *
3661146 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGACATGAGCGTG
391 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * * * *
3661211 CGGGCGCTCAACCGACCAGAGGGGCGAGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACG
456 CGGGTGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCG
* * *
3661276 TGCTGCCGATCCTGCTGCTGTGACCCTCGATCCGGT-TCGATCTTAGACTAGGAATGAACTCCGT
521 TGCTGCCGATCCTGCTGCCGTAACCCTCG-TTCGGTCT-GATCTTAGACTAGGAATGAACTCCGT
* * * *
3661340 ATGCCTAAGCCAACGGACGAAACGAGCGGGCGGGCGGGCGAGCACTACGCCAGCCAGAGAGACGG
584 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTG-GCACTACGTCGGCCAGAGAGACGG
* * **
3661405 GATGTGCAAGCCGTGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTG
648 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
*
3661470 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGTCTTCACGTGAAGTTTCA
713 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * ** * *
3661535 TGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTA
778 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTA
*
3661600 AAATTTCTTT-GGAAGGAGTTTTGG-CCCAAACTTGGTAGA-TGTGGTCCTTGTA-TTT
843 AAATTT-TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACT-TGATCCTTGTATTTT
* * * * *
3661655 TTTTGGCTTGCACAAAAAAATTCAGGTAAAAACCCGAAGTGTAGAAGATTTTGCGACCATTTGAA
1 TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* *
3661720 AAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCT
66 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
*
3661785 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGT--
131 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* *
3661848 --------A-C-CACATCATGTGCGTACACCCACCC-CGGCCCGCCCGATC-TCCGGAACCCCAA
196 CAGCACCCATCGCACATCATGTGCGCACACCC-CCCTCGGCCCCCCCGATCGT-CGGAACCCCAA
* * *
3661901 TACCG-TCGGTCAGG---T-------T-CTCCGACGATGGTGCCCCGACAAAGAAAAATGCGGCA
259 TGCCGCT-GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCA
* * * * * * *
3661954 CCAGCACATGCTCGAGCCTAGCATGTGCTGCTGCAACCCTCGGTCCAGCCCGATCTTAGGCTTGG
323 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGG
* * * *
3662019 AATGAACTCCATATGCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGC
388 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * *
3662084 GTGTGGGCGCTCAGCTGGCCAGAGGGGCGGGGTGCACAAGTCGGGGATCGGTCGGGT-CCCCTGC
453 GTGCGGGTGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCT-C
* * * ** *
3662148 TGCGTGCTGTCGATCCTGCTGCCGTAACCCTTGGTTTGGTCCAATCTTAGACT-GGAAATGAATT
517 TGCGTGCTGCCGATCCTGCTGCCGTAACCC-TCGTTCGGTCTGATCTTAGACTAGG-AATGAACT
* * *
3662212 CTGTATGCCTAAGCCAACCGACGAAACGA----GCGGGC---TGGCACTACGCCGGCCAGAGCGA
580 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGCACTACGTCGGCCAGAGAGA
* * *
3662270 CGGGATGCGCAAGCCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACAACTTCATATTTCTAC
645 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
*
3662335 GTGCCAATGCCATTTTT-TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
710 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* *
3662399 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTGTTTACGGTTTAGGATTTT
775 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTT
* * * *
3662464 TTAAAATTTCTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGCATTTT
840 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACTTGATCCTTGTATTTT
** * * * * * *
3662524 TTTTGGCATATAAAAAAAAATTCAGTTAGAAACTCAAAGTCTACAATATTTTGTGACCATTTGAA
1 TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* *
3662589 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATCCT
66 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
*
3662654 CTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
131 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * ** *
3662719 CATC-CCTCATCGCACATCTTGTGCGCATACCGCCCC-CGGCCCCCCCGATCACCAGAACCCCAA
196 CAGCACC-CATCGCACATCATGTGCGCACACC-CCCCTCGGCCCCCCCGATCGTCGGAACCCCAA
** * * ** **
3662782 TGATGCGGGTCAGGTTCTCTGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCAGCAC
259 TGCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCAC
* * *
3662847 CAGCACATGCCCGAGCCCAGTATGTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGA
324 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
* * * *
3662912 ATGAACTCTGTATGCTTAGATTGGGAGTGAACTCCGTATGCCTAAGTGAACCCACGAAACGAGCG
389 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * *
3662977 TGCAGGCGGTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCGATCGGGT-CCCCTGTT
454 TGCGGGTGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCT-CT
* * * * * * * * * *
3663041 GCGTGTTGTCGATCCTACTACTGTAACCCTCATTCCGGTCCGATCTTAGACTGGGAATGAATTTC
518 GCGTGCTGCCGATCCTGCTGCCGTAACCCTCGTT-CGGTCTGATCTTAGACTAGGAATGAACTCC
* * * * *
3663106 GTATGCCTAAGCGAACCGACGAAAC-A---AGTGGGC---TGGCACTACGTTGGCCAGAGAGATG
582 GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGCACTACGTCGGCCAGAGAGACG
* * * *
3663164 GGATACGCAAGCCGTGGATCGATAGGATGGTAGGTGGGTTTAGGGACATCTTAATATTTCTGCAT
647 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
* *
3663229 GCCCAGGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
712 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
*
3663294 ATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-GAGATTTTT
777 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG-GATTTTT
*
3663358 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGACTTGGTAGACATGATCCT
841 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT--A---GAC----T-----TGATCCT
*
3663423 TCTATTTT
892 TGTATTTT
* * * *
3663431 TGTTGGCTTGCACAAAAACATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAA
1 TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-A
* * *
3663496 AAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACGGGCAGCAAACCTATAAAATCTCAAATGC
65 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
*
3663561 TCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
130 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* *
3663626 CCAGCACCCATCGCACATTATGTGTGCACACCCCCC-CGG-CCCCCCGATCGTCGGAACCCCAAT
195 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGTCGGAACCCCAAT
* * * *
3663689 GTCGCTGGTCAGG---T-------T-CTCCGACGATGGTGCCTCGATGAAGAAAAATGTGGCACT
260 GCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACC
* * * * *
3663743 AGCACATGCCCGAGCCCATCATGTGCTACCGTAACCCTCGGTCCGGTCCAATCTTAGACTGGGAG
325 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
*
3663808 TGAACTCCATATGC-----CT----A--AA-T-CG-A--CC-----C-A--CA--AAACGAGCGT
390 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
** * * * * * * * *
3663847 GTAGGCGTTCAGCTGGCCAAACGGGCGGGATGCGCAAGCCGAGGATCGACCAGGTCTCCCTCTGC
455 GCGGGTGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGC
* * * * *
3663912 GTGCTGTCAATCCTGCTGCCGTAACCCTCAATTTGGTCTGATCTTAGACTGGGAATGAACTCCGT
520 GTGCTGCCGATCCTGCTGCCGTAACCCTC-GTTCGGTCTGATCTTAGACTAGGAATGAACTCCGT
* * * * *
3663977 ATGCCTAACCCAACCGATGAAATGAGCGGGCGGGC--G-GGCACTACGTCGGCCAAAGAGACGAG
584 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGCACTACGTCGGCCAGAGAGACGGG
* * * **
3664039 ATGCGCAAGCAGTGGAACGATAGGGTGGTAGGTGGGTTTACGCACATCTTCATATTTCTGTGTGC
649 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* *
3664104 CAATGCCATTTTTATGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTT
714 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * *
3664169 GGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTA
779 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAA
* * *
3664234 AATTTTTTCGGAAGGATTTTTGGCCCTAGATA-TT-GTAGACATGATCCTTGTATTTT
844 AATTTTTTCGGAAGGAGTTTTGGCCCCA-A-ACTTGGTAGACTTGATCCTTGTATTTT
* * *
3664290 TGTTGGCATGAACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCATTTGAA
1 TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* * *
3664355 AAAAGTGCCCCCA-TTCTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAATTTTCAAATGC
66 AAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
3664419 TCTTT-AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAGAGGGGGCCAATATAAGGGCCAAGGA
130 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * *
3664483 CCAGCACCCGTCGCACATCATTTGCGCACA--CCCCTCGGCCTCCCCGATCGTCGGAACCCCAAT
195 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGTCGGAACCCCAAT
* * * ** * * ** * *
3664546 GCCG-TCAGTGAGGTTCTTCGGTGATGCTCCGAAGATGTTGCCCCGGTGAAGAAAAATGCGGTAC
260 GCCGCT-GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCAC
* * * *
3664610 CAGCACTTGCTCGAGCCCAGCATGTGCTACCGCAACCCGCGGTCCGGTCCGATCTTAGACTGGGA
324 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
3664675 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
389 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
3664716 TTAGACTAGG
Statistics
Matches: 5022, Mismatches: 589, Indels: 312
0.85 0.10 0.05
Matches are distributed among these distances:
855 4 0.00
856 4 0.00
857 116 0.02
858 61 0.01
859 72 0.01
860 1 0.00
866 2 0.00
867 127 0.03
868 224 0.04
869 309 0.06
870 8 0.00
871 3 0.00
872 6 0.00
873 235 0.05
874 4 0.00
875 8 0.00
876 269 0.05
877 4 0.00
879 5 0.00
880 2 0.00
881 54 0.01
882 4 0.00
883 1 0.00
884 6 0.00
886 104 0.02
887 54 0.01
888 206 0.04
889 1 0.00
890 2 0.00
891 14 0.00
892 371 0.07
893 147 0.03
895 108 0.02
896 1 0.00
898 3 0.00
899 189 0.04
900 297 0.06
901 488 0.10
902 270 0.05
903 277 0.06
904 452 0.09
905 190 0.04
906 94 0.02
907 71 0.01
908 152 0.03
909 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
CAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATG
CCGCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCA
GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
CGGGTGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCG
TGCTGCCGATCCTGCTGCCGTAACCCTCGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTAT
GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGCACTACGTCGGCCAGAGAGACGGGAT
GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAA
TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACTTGATCCTTGTATTTT
Found at i:3661168 original size:26 final size:26
Alignment explanation
Indices: 3661132--3661184 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3661122 TCGGTCTGAT
3661132 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3661158 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3661184 C
1 C
3661185 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3662929 original size:26 final size:26
Alignment explanation
Indices: 3662900--3662952 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3662890 CTGGTCCAAT
*
3662900 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
3662926 CTTAGATTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3662952 C
1 C
3662953 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3664692 original size:26 final size:26
Alignment explanation
Indices: 3664663--3664741 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
3664653 CCGGTCCGAT
3664663 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3664689 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
3664715 CTTAGACTAGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3664741 C
1 C
3664742 CTAAGTGAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3664971 original size:159 final size:159
Alignment explanation
Indices: 3664715--3665063 Score: 371
Period size: 159 Copynumber: 2.2 Consensus size: 159
3664705 ACTCCGTATG
* * * * * * *
3664715 CTTAGACTAGGAATTAACTCCGTATGCCTAAGTGAACCCACGAAACGAACATGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAATGAACCCACAAAACGAACATGCAGGCGCTCAAC
* * * ** * *
3664780 CGGCCAGAGGGGTGGGATGCGCAAGCTGAGGATCGGTCGGGTAC-CCCTCTGTGTACTATCGATC
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGAGGATCGACCAGGT-CTCCCTCTGCGTACTATCGATC
* *
3664844 CTGCTACCG-TACCCTTCGGTCCGGTCCAAT
130 CTGCTACCGCAACCCTT-GATCCGGTCCAAT
* * * *
3664874 CTTAGACTGGGAATGAACTCCGTATGCCTAAATCG-ACCCACAAAATGAGCGTGTAGGCGCTCAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAAT-GAACCCACAAAACGAACATGCAGGCGCTCAA
* * * *
3664938 CTGGCGAAAGGGGCGGGATGCGCAAGCCGAGGATCGACCAGGTCTCCCTCTGCGTGCTGTCGATC
65 CCGGCCAAAGGGGCGGGATGCGCAAGCCGAGGATCGACCAGGTCTCCCTCTGCGTACTATCGATC
** * **
3665003 CTGCTGTCGCAACCCTTGATTCGGTCTGAT
130 CTGCTACCGCAACCCTTGATCCGGTCCAAT
* *
3665033 CTTAGATTGGGAATGAACTTCGTATGCCTAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAA
3665064 GCCAACCGAC
Statistics
Matches: 156, Mismatches: 31, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
158 1 0.01
159 148 0.95
160 7 0.04
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAATGAACCCACAAAACGAACATGCAGGCGCTCAAC
CGGCCAAAGGGGCGGGATGCGCAAGCCGAGGATCGACCAGGTCTCCCTCTGCGTACTATCGATCC
TGCTACCGCAACCCTTGATCCGGTCCAAT
Found at i:3665782 original size:26 final size:26
Alignment explanation
Indices: 3665744--3665796 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3665734 CCGGTCCGAT
*
3665744 CTTAGACTAGGAACAAACTCTGTATG
1 CTTAGACTAGGAACAAACTCCGTATG
* **
3665770 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAACAAACTCCGTATG
3665796 C
1 C
3665797 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAACAAACTCCGTATG
Found at i:3666675 original size:25 final size:26
Alignment explanation
Indices: 3666633--3666684 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
3666623 CTGGTCTGAT
* *
3666633 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
3666659 CTTACACT-GGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
3666684 C
1 C
3666685 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:3667191 original size:896 final size:893
Alignment explanation
Indices: 3664874--3667556 Score: 3637
Period size: 896 Copynumber: 3.0 Consensus size: 893
3664864 CCGGTCCAAT
* * * * * * *
3664874 CTTAGACTGGGAATGAACTCCGTATGCCTAAATCGACCCACAAAATGAGCGTGTAGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGC
* * * * * * *
3664939 TGGCGAAAGGGGCGGGATGCGCAAGCCGAGGATCGACCAGGTCTCCCTCTGCGTGCTGTCGATCC
66 TGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCC
** * * *
3665004 TGCTGTCGCAACCCTTGATTCGGTCTGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTTGGTTCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
3665069 CCGACGAAACGAGCAGGC-G-GG-CGGGCACTATGTCGGCCAGAGAGTCGGGATGCGCAAGCCGT
196 CCGACGAAACGAGCGGGCGGCGGACGGGCACTAGGCCGACGA-AGAGACGGGATGCGCAAGCCGT
* * * * * *
3665131 GGATCGATAGGGTGGCAAGTGGGTTTAGGTACATCTTCATATTTCTCCATGCCAATGCCATTTTT
260 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCTACGTGCCAATGCCA-TTTT
* * *
3665196 ATGGCTTGTAAATTCATACAATGGTCCCATAAGCCTTCACATGAAGTTTCATGGCAAGACGACCC
324 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * * *
3665261 ATTTTCTATTTTTCACGATTTTCGAAACTCTTTGCGGTTCGGGATTTTTTGAAATTTTTTTGAAA
389 ATTTTCTATTTTTCACGATTTTAGAAACTCTTTACGGTTCAGGATTTTTT-AAAATTTTTCGGAA
* * * *
3665326 GGAGTTTTGGCTCCAAACTTGTTAGACATGATCCTTGTATTTTTGTTGGC-TTGCAAAAAAAAAT
453 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATT--AAAAAAAAAT
* *
3665390 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTCAGAC
516 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
3665455 ACTTTAATTGCTACTAGCAA-CAAACTTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTC
581 ACTTTAATGGCTACTAG-AAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
3665519 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
645 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* ** *
3665584 GTGCGCACACCCCCTCGACCCACCTAATC-TCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
710 GTGCGCACACCCCC-CGACCCCCCCGATCGT-CGGAACCCCAATGCCGCTGGTCAGGTTCTCCGG
* * * * *
3665648 CGATGCTCCGACGATGGAGCCCCGACGAAGAAAAATACGGCAGCAACACATGCCCGAGCCCAGCA
773 CGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGA-ACCAGCA
* **
3665713 TGTGCTGTCGTAACCCTCGATCCGGTCCGATCTTAGACTAGGAACAAAC-TCTGTATG
837 TGTGCTGTCGTAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTTC-GTATG
*
3665770 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGC
* * *
3665835 TGGCCAGAGGGGCGGGGTGCACAAGTCGGGGATCGGTCGGGT-CCCCTGCTGCGTGCTGTCGATC
66 TGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCT-CTGCGTGCTGTCGATC
* * * * * * *
3665899 CTGCTACCGTAACCCTTGGTTTGGTCCAATCTTAGACTGGAAATGAATTCTGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTTGGTTCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
** * *
3665964 ACCGACGAAACGAGCGGGCTGGC--ACTACGC-C--GGCC-A-G-AGCGACGGGATGCGTAAGCC
195 ACCGACGAAACGAGCGGGC-GGCGGAC-GGGCACTAGGCCGACGAAGAGACGGGATGCGCAAGCC
* *
3666021 GTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACA-ACTTCATATTTCTATGTGCCAATGCCATT
258 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATA-TTCATATTTCTACGTGCCAATGCCATT
* *
3666085 TTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAAC
322 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
3666150 TCGTTTTCTATTTTTCACGATTTTTGAAACTGTTTACGGTTTAGGATTTTTTAAAATTTCTTCGG
387 TCATTTTCTATTTTTCACGATTTTAGAAACTCTTTACGGTTCAGGATTTTTTAAAATTT-TTCGG
* *
3666215 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGCATTTTTTTTGGCATATAAAAAAAAA
451 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAT-TAAAAAAAAA
* *
3666280 TTCAG-TCAGAAACTCAAAGTCTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
515 TTCAGCT-AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
3666344 ACACTTTAATGGCTACTAGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
579 ACACTTTAATGGCTACTAGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* ** *
3666409 CTCAAGGTTTGATGATCGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCA
644 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
3666474 TATGCGCACACCCCCCGACCCCCCCGATCGTCGGATCCCCAATGCCGCTGGTTAGGTTCTCCGGC
709 TGTGCGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGC
* * * *
3666539 GTTGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGACACCAGCACAT-CCCAAACCTAGCAT
774 GATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAACC-AGCAT
* ** * *
3666603 GGGGC-ACCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATG
838 -GTGCTGTCGTAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATG
*
3666659 CTTACACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGC
* ** * ** *
3666723 CGGCCAGAGGGGCAAGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCATGCTACCAATCC
66 TGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCC
* ** * *
3666788 TGCTACCACAACCCCCGGTTCAGACCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTTGGTTCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
3666853 CCGATGAAACGAGCGGGCGGGCGGACGGGCACTAGGCCGACGAAAGAGACGGGATGCGCGAGCCG
196 CCGACGAAACGAGCGGGC-GGCGGACGGGCACTAGGCCGACG-AAGAGACGGGATGCGCAAGCCG
* * *
3666918 TGGAT-GATAGGGTGGTTGGTGGGTTTAGGCACATATTCATATTTCTGCGTACCAATGCCATTTT
259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCTACGTGCCAATGCCATTTT
3666982 CATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
324 -ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * *
3667047 CATTTTCTATTTTTCATGATTTTAAAAACTTTTTACGGTTCATGATTTTTTAAAAAATTTTCGGA
388 CATTTTCTATTTTTCACGATTTTAGAAACTCTTTACGGTTCAGGATTTTTT-AAAATTTTTCGGA
* **
3667112 AGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATTAATAAAAACGT
452 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATTAA-AAAAAAAT
* * * *
3667177 TCAGCTAAAAACTCAAAATGTACAAGAATTTGTGACCAATTGAAAAAAGTGTCCCCATTTCGGAC
516 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
3667242 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCT
581 ACTTTAATGGCTACTAGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
3667307 TGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGTACATCATG
646 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * **
3667372 TGCGCACACCCCCGGGCCCCCCCGATCGTCGGAACCCCAATGCCGTTAGTCAGGTTCTCCGATGA
711 TGCGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGA
3667437 TGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGGAACCAGCATGT
776 TGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCC-GAACCAGCATGT
* * *
3667502 GCTGTCATAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
840 GCTGTCGTAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATG
3667556 C
1 C
3667557 CTAAGTCAGC
Statistics
Matches: 1561, Mismatches: 192, Indels: 67
0.86 0.11 0.04
Matches are distributed among these distances:
888 179 0.11
889 64 0.04
890 102 0.07
891 359 0.23
892 75 0.05
893 2 0.00
894 1 0.00
895 59 0.04
896 651 0.42
897 60 0.04
898 7 0.00
899 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (893 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGC
TGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCC
TGCTACCGCAACCCTTGGTTCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGCGGACGGGCACTAGGCCGACGAAGAGACGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCTACGTGCCAATGCCATTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
TTTCTATTTTTCACGATTTTAGAAACTCTTTACGGTTCAGGATTTTTTAAAATTTTTCGGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATTAAAAAAAAATTCAGC
TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTAGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTC
CGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAACCAGCATGTGCTGTC
GTAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATG
Found at i:3668910 original size:26 final size:26
Alignment explanation
Indices: 3668881--3668933 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3668871 CCTGTTCGAT
* * *
3668881 CTTAGACCGGTAATGAACTTCGTATG
1 CTTAAACCGGGAATGAACTCCGTATG
*
3668907 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACCGGGAATGAACTCCGTATG
3668933 C
1 C
3668934 CTAAGTGAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAAACCGGGAATGAACTCCGTATG
Found at i:3669226 original size:159 final size:159
Alignment explanation
Indices: 3668907--3669271 Score: 435
Period size: 159 Copynumber: 2.3 Consensus size: 159
3668897 ACTTCGTATG
* ** * *
3668907 CTTAAACTGGGAATGAACTCCGTATGCCTAAGTGAACCCATGAAACGAGCGTGCGGGCGGTCAAC
1 CTTAAACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGTGCGGGCGCTCAAC
* * * *
3668972 CGGCCAGAAGGGCGGGATCCACAAGCCGGGGATCGACCGGGTCCCCCTCTGCTTGCTACCGATCT
66 CGGCCAGAAGGGCGAGATCCACAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCTACCGATCC
* * ** *
3669037 TGCTGCTGTAACCCTCGGTCTGGTTTGAT
131 TGCTGCTGCAACCCTCGATCCAGTTCGAT
* * * *
3669066 CTTACACTGGGAATGAACTCTGTATGCCTAAGCCAATCGATGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAAACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGTGCGGGCGCTCAAC
* * *** * **
3669131 TGGCCAGAGGGGCGAGATGTGCAAGTCGGGGATCGACCAGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAAGGGCGAGATCCACAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCTACCGATCC
* *
3669196 TGCTGTTGCAACCTTCGATCCAGTTCGAT
131 TGCTGCTGCAACCCTCGATCCAGTTCGAT
* * *
3669225 CTTAGACTAGGAATGAACT-TCGTATGCCTAAACCAACCGATGAAACG
1 CTTAAACTGGGAATGAACTCT-GTATGCCTAAGCCAACCGATGAAACG
3669272 CGCGGGCAGG
Statistics
Matches: 172, Mismatches: 33, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
158 1 0.01
159 171 0.99
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.22
Consensus pattern (159 bp):
CTTAAACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGTGCGGGCGCTCAAC
CGGCCAGAAGGGCGAGATCCACAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCTACCGATCC
TGCTGCTGCAACCCTCGATCCAGTTCGAT
Found at i:3670314 original size:26 final size:26
Alignment explanation
Indices: 3670277--3670329 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3670267 CCTGTCTGAT
* *
3670277 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCATATG
3670303 CTTAGACAGGGAATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
3670329 C
1 C
3670330 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:3671794 original size:26 final size:26
Alignment explanation
Indices: 3671764--3671814 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
3671754 TTAACTGAGC
* *
3671764 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGAAGTTAATTCCCAGTCTAAA
3671790 CATACGAAGTTAATTCCCAGTCTAA
1 CATACGAAGTTAATTCCCAGTCTAA
3671815 GATCGAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTAATTCCCAGTCTAAA
Found at i:3672693 original size:26 final size:26
Alignment explanation
Indices: 3672657--3672707 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3672647 GTTGACTTAG
3672657 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3672683 GCATGCGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
3672708 GGATCGGAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3673871 original size:895 final size:893
Alignment explanation
Indices: 3671542--3679330 Score: 9240
Period size: 895 Copynumber: 8.8 Consensus size: 893
3671532 GCCAATGCCA
* * * *
3671542 TCTCTCTGGTCGGCGTAATGCCCGCCCGCCCGCCCGCACACTCGTTTCGTCAGTTGGCTTAGGCA
1 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC-C-CGCTCGTTTCGTCGGTTGGCTTAGGCA
* * *
3671607 TACGAAGTTCATTCCCAGTCTAAGATCT-GACCAGATCGAGGGTTTCGGTAGCAGGATCGACAGC
64 TACGGAGTTCATTCCCAGTCTAAGAT-TGGACCAGACCGAGGGTTGCGGTAGCAGGAT---CAGC
* * * * * *
3671671 ACGCAGAGAGGGACCCGACCGATCCCCGGCTTGCGCATCTCACCCCTCTGGCCAGTTGAGTGCCC
125 ACGCAGAGA--GACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * * * * *
3671736 GCACGCACGTTTCATGGGTTAACTGAGCCATACGGAGTTCATTCCCAGTCTAAACATACGAAGTT
188 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * *
3671801 AATTCCCAGTCTAAGATCGAATTAGACC-GAGGGTTGCGGTAGCACATGCTGGGCT-GGGCATGT
253 CATTCCCAGTCTAAGATCGGACTGGACCAG-GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* *
3671864 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGAAGAACCTGA-A-CG
317 GCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACAGCG
* * * * *
3671927 ATGACATTGCGGTTCCGACGATTGGGCGGGCCGAGGGGGTGTACGCACATGATGTGTGATGGGTG
382 --G-CATTGGGGTTCCGGCGATCGGG-GGGCC--GGGGGTGTGCGCACATGATGTGCGATGGGTG
3671992 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
441 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
* *
3672057 AAGAGCATGTGAGATTTTACGGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
506 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
3672122 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCA
571 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* ** * *
3672187 ACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTCAAAA
636 AAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* *
3672252 AATC-CTGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGGCGTCTTGCCATGAA
701 AATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
3672316 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGTCACG
765 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * *
3672381 CAGAATTATGAAGACGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
830 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * *
3672445 TCTTTCTGGCCGACG-CG-G--TGCCCGCCCG--CCCGCTCGTTTCGTCAGTTGGCTTAGGCATA
1 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * ** * * * *
3672504 CGGAGTT-ATTCCCAATCTAACATCAGACCAGACTGAGGGTTGCAGCAGCAGGATCGATAGCATG
66 CGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATC---AGCACG
* * * *
3672568 CAGAGGGGGACCCGACCGATCCCCGGCTTGCTCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCA
128 CAGA--GAGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
*
3672633 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCAT
191 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * * * *
3672698 TCCCAGTCTAGGATCGGAATGGACCAAGGGTTACGGCAGCACATGCTGGGCTCGAGAATGTGTTG
256 TCCCAGTCTAAGATCGGACTGGACCAGGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * ** *
3672763 GTGCTGCATTTCTT-TTTGTCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGATCGGCGGC
321 GTGCTGCATTT-TTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGA-CAGCGGC
*
3672827 ATTGGGGTTTCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
384 ATTGGGGTTCCGGCGATCGGGGGGCC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * * *
3672892 TTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCTTCAAGAGCA
448 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
* * * * *
3672957 TTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAATGTGTATAAAATGAGGACACTTTTTTCA
513 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * **
3673022 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGGAATGCCATCAAAAA
578 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* * * * *
3673087 TACAAGGATCACCTCTACCAAGTTTGGTGTCGAAACTCCTTCC-AAAAAACTTTTAAAAGATCTC
643 TACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCTC
* **
3673151 GAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
707 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
3673216 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAAT
772 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
* * **
3673281 ATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGTTTCCCG
837 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
*
3673338 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCACGCTCGTTTCGTCAGTTGGCTTAGGCA
1 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC-C-CGCTCGTTTCGTCGGTTGGCTTAGGCA
* *
3673403 TACGGAGTTCATT-CCAGTCTAAGATTGGACCAGACCGATGGTTGCGGTAGCAGGATCAGTAC-C
64 TACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCAGCACGC
* * * * * * * *
3673466 ATACAGACCCAACCGATTCTCGGCGTACGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGTACGC
129 AGAGAGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * *
3673531 TCATTTCGTGAGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCC
194 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * *
3673596 CAGTCTAGGATCGGACTGGACCAGGGGTTGCGGCAGCACATGCTGGGCTTGGGAATGTGTTGGTG
259 CAGTCTAAGATCGGACTGGACCAGGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * **
3673661 CTACATTTTTTTTCGTCAGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGATCAGCGGCATTG
324 CTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGA-CAGCGGCATTG
* * * * * *
3673726 GGGTTCCGGCGATCGGGGGGCCAGGGGTTGTACGCCCATGATGTGCAATAGGTGCTGGTACTTGA
388 GGGTTCCGGCGATCGGGGGGCC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * * * *
3673791 CCCTTATATTGGTCCCCTATCCCCCATCAAACCTCGAGAACTCACACCCTCTTAAAGTGCATTTG
452 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTG
* *
3673856 AGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
517 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * *
3673921 GTCACAAAATCTTGTACAGTTTGAGTTTTTAGCTGAATTTGTTTGTGCAAGCCAAAAAAAATACA
582 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* *
3673986 AAGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CGGAAC
647 AGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAAC
* * * *
3674050 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCGCGTGA
711 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
** * * * * *
3674115 TCGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGTAGAAATATAA
776 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
* **
3674180 AGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTA
841 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
3674233 TCTCTCTGGCCGACGTAGT--------GCCCG--CCCGCTCGTTTCGTCGGTTGGCATAGGCATA
1 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* **** * * *
3674288 CGGAGTTCATTCCCAGTCTAACACCAAACCAGATCGAGGGTTG-GGACAGCAGGATTAGCA-GCA
66 CGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGG-TAGCAGGATCAGCACGCA
* * *** * *
3674351 CACAGA---AGGGGA--CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTAAGCGCCCGCACGCT
130 GAGAGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * *
3674411 CGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCT
195 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * *
3674476 AGTCTAAGATCAGA-TCAGACC-GAAGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
260 AGTCTAAGATCGGACT-GGACCAG-GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * ** *
3674539 GCTGCATTTTTCTTCGTCGGGGCACCATCATCGAAGAATCGTCGGAGAACCTGACACGCGTCATT
323 GCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACA-GCGGCATT
* * **
3674604 AGGGTTTCGATGATC----GG-C-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
387 GGGGTTCCGGCGATCGGGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
3674663 CCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTG
452 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTG
* * * * *
3674727 AGATTTTACAGGTTTGCTGCCAGTAGCAAGTAAAGTGTCTAAAATAGCGACACTTTTTTCAAATG
517 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* ** *
3674792 GTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGATTTTGTGCATGCCAACAAAAATACA
582 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
3674857 AGGATCACATCTACCAAGTTTGGGGCCAAAACTCCATT-C-AAAAAATTTTAAAAAATCTCGAAC
647 AGGATCACATCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAAAAATTTTAAAAAATCTCGAAC
* * *
3674920 TGGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
711 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * * *
3674985 AGGCTTAGGGGACCATTCTATGAATTCACAAGCCATAAAAATGGCATTGGCACACAGAAATATAA
776 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
* *
3675050 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCA
841 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * ** * * *
3675103 TCCCTCTGGTCGATGTAGTTCCCGCCCGCCCACCTGCCCGCTCGTTTCGTCGATTGGCTTAGGCA
1 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC--CCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* ** ** *
3675168 TATGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTAAGGGTTGCGATAGCAGGATCAGCAGCA
64 TACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGAT---CAGCA
* * * * * * * * *
3675233 CACAAAGGGGGACCCGACCGATCCCTGGCCTGCGTA-CCACACCCCTCTGGCCGGTTGAGCGCCC
126 CGC--AGAGAGACCCAACCGATCCCCGGCTTGCGCATCC-CGCCCCTCTGGCCGGCTGAGCGCCC
** *
3675297 ATACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAG--T---C-TA---AG--
188 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
*
3675351 -A-T--C-G-----GATCGGACT-G---A-GGG-TGACGGTAGCACATGCTGGGCTCGGGCATGT
253 CATTCCCAGTCTAAGATCGGACTGGACCAGGGGTTG-CGGCAGCACATGCTGGGCTCGGGCATGT
* * * * * * * * * *
3675400 GCTGCTGCCGTATTTTTCTTCATCGGGGCACCATGGCCAGAGCATCATCGGAGAACCTGACCGGT
317 GCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGA-CAGC
* * * * *
3675465 GGCATAGGGGGTCCGACGATCGGGGGGTCAGGGGGTGTTCGCACATGATGTGCGATGGGTGCTGG
381 GGCATTGGGGTTCCGGCGATCGGGGGG-CCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
3675530 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
445 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
* **
3675595 GCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCATTAAAGTGTCTGAAATGGAAACACTTTTT
510 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * *
3675660 TCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTATGCATGCCAACAA
575 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
**
3675725 AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
640 AAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
** *
3675790 TCGAATCATC-GAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
705 TCGAA-CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * *
3675854 CATGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGA
769 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* **
3675919 AATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGCTTGCATATCCCG
834 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
3675979 TCTCTCTGGTCGGCGTAGTGCCTG-TCGACCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGC
1 TCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCCG-CC-CCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * * *
3676043 ATACGGAGTTCCTTCCTAGTCTAAGATAGGACCGGACGGAGGGTTGCCGCAGCAGGATTGGCAGC
63 ATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGA-T--CAGC
* * * *
3676108 ACGCAGAGGGGGACCCAACCGATCCCCAGCTTCCGTATCCCGCCCCTCTGGCCGGCTGAGCGCCC
125 ACGCAGA--GAGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* *
3676173 CCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG--
188 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * *
3676232 -A---CC-G-----GA-C---C--G---A-GTGTTACGGCAGCTCATCCTGGGCTCGGGCATATG
253 CATTCCCAGTCTAAGATCGGACTGGACCAGGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * * *
3676277 TTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAG-A--ACC--TG-ACC-G--A-CGG
318 CTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACAGCGG
* *
3676332 CATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACAGGATGTGCGATGGGTGCTGG
383 CATTGGGGTTCCGGCGATC-GGGGGGCC--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * * *
3676397 TACTTGGACCTTCTATTGGCCCTCTATCCCTCATCAAACCTCAAGAACTCACATCCCCTTAAAGA
445 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
**
3676462 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAAACACTTTTT
510 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
3676527 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTTCATGCCAAAAA
575 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* ** * *
3676592 CAATACGGGGATCACATCTACCAAGTTTGGGGCCAAAACTTCTTCCAAAAAAATTTT-AAAAATC
640 AAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * * * *
3676656 TGGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTCC
705 TCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
3676721 ACGTGAAGGCTTAAGAGG-CCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCATGCAAA
770 ACGTGAAGGCTTAAG-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* * *
3676785 AATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCACGGCTTGCGCTTTCCG
834 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * *
3676845 TCTCTCTGGCCGGCATAGTGCCTGCCCGCCTGCCCACCCACTCATTTCGTCGGTTGGCTTAGGCA
1 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CC-CCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * *
3676910 TACGAAGTTCATTCCTAGTCTAAGATAGGACCAGACCGAGGGTTGCGGTAGTAGGATTGGCAGCA
64 TACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGA-T--CAGCA
* * ** * *
3676975 TGCAGAGGGGGACCCAGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTG
126 CGCAGA--GAGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* *
3677040 CACG--C---T--T--G-T---TT---CAT--GG-G----TTGCC--T-TAGGCATACGGAGTTC
189 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * * * * **
3677079 ATTCCCAGTCCAAGATCGGACTGGACCAAGGGTTACGGTAGCTCATGCTGGGCTCGAGCATACGC
254 ATTCCCAGTCTAAGATCGGACTGGACCAGGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
** * * * * * *
3677144 TGGTGCCACATTTTTCTTCGTCAGGGCACCATCGGCGTAGCATCACCGGACAACTTGACCGACGG
319 TGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACAG-CGG
* * * * * * *
3677209 AATTGGGGTTCCAGCAATTGGTGGGGTCGGGGGGGTGCGCACATGATGTGGGATGGGTGCTGGTA
383 CATTGGGGTTCCGGCGATCGG-GGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * * *
3677274 CTTGGCCCTTCTATTGGCCCCCTATCCTTCATCAAACCTTAAGAAATCACACCCCCTTAAAGAGC
447 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
* *
3677339 ATTTGAGATTTTATAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
512 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
3677404 AAATGGTCACAAAACCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCGAAAAAAA
577 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
* * * *
3677469 ATACAGGGATGATATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAACTCTC
642 ATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC
* ** * * *
3677534 AAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACCAGTCATCTTGCCATGAAGCTTCAC
707 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
3677599 GTGAAGGCGTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
772 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
* * * *
3677664 ATGAAGATGTGCCTAAGCGCACCTACCACCCTATCGATCCACGGCTTGCGCTTCTCG
837 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
3677721 TCTCTCTGGCTGGCGTAGTGCCCGCCCG-CC-CACCCGCTCATTTCGTCGGTTGGCTTAGGCATA
1 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * * * *
3677784 TGGAGTTCATTCCCAGTCTAAGATAGGATCGGACCGAGGGTTGCGGCAGTAAGATTGGAAGCACG
66 CGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGA-T--CAGCACG
* * *
3677849 CAGAGGGGGACTCAACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCA
128 CAGA--GAGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
3677914 CGCTCGTTTCGTGGGTTGCCTTAGGCATACAGAGTTCATTTCCAGTCTAAGCATACGGAGTTCAT
191 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * * * * *
3677979 TCCAACTCTAAGATTGGACTGGACC-GAGGGTTGTGGAAGCTA-ATGCTGGGTTTGGGCATATGC
256 TCCCAGTCTAAGATCGGACTGGACCAG-GGGTTGCGGCAGC-ACATGCTGGGCTCGGGCATGTGC
* * * * * * * * * *
3678042 TGGTGCTGTATTTTTCTTTGCCGGGGCACCATCGCCGAAGCACCGCCGGAGAACCTGACCGATGA
319 TGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACAG-CGG
* * * *
3678107 AATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGG
383 CATTGGGGTTCCGGCGATC-GGGGGGCC--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
3678172 TACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGA
445 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
3678237 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT--GGACACTTTTT
510 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * **
3678300 TCAAATGGTCACAAAATCTCGTACACTTCAAGTTTTTAGCTGAATTTTTTTATGCATGGAAAAAA
575 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* * *
3678365 AAAAACAGAGGGATCACATCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAAAATTTGAAAAAA
640 AAATACA-A-GGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
** * *
3678430 TCTCGAACCGCAAAAAGTTTTGAAAATCGTGGAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
703 TCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * **
3678495 TCAGGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
768 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
*
3678560 AAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
833 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
3678621 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--CCCGCTCATTTCGTCGGTTGGCTTGGGCATA
1 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * * *
3678684 CGAAATTAATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGAGGTAGTAGGATCGACAGCATG
66 CGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGAT---CAGCACG
* * * * * * *
3678749 CAGAGGGGGACCCGACTGATCCTCGGCTTGTGCATCCTGCCCCTCTAGCCGGCTGAGCGCCCGCA
128 CAGA--GAGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
3678814 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCGT
191 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
*** * * * * *
3678879 TCCCAGTCTAAGATCGGACCAAACC-GATGGTTACAGTAGCACATGTTGGGCTCGGGCATGTGCT
256 TCCCAGTCTAAGATCGGACTGGACCAG-GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
** * * *
3678943 GGTGCCT-CATTTTTCTTCACCGGGGCACCATCATCGGAGCATCACCGGAGAACTTGACCGGCGG
320 GGTG-CTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGA-CAGCGG
* * *
3679007 CATTGGGGTTTCGGCGATCGGAGGGGCCGGGGTGTGGGCGCACATGATGTGCGATGGATGCTGGT
383 CATTGGGGTTCCGGCGATCGG-GGGGCCGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
3679072 ACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
446 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
3679137 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
511 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
** * *
3679202 CAAAAT-GTCACAAAA-AATGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAATAA
576 C-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* * *
3679265 AAATACAAGGTTCCCATCTACCAAGTTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAAT
640 AAATACAAGGATCACATCTACCAAG-TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
3679330 C
704 C
3679331 CCGACGATCG
Statistics
Matches: 5979, Mismatches: 727, Indels: 364
0.85 0.10 0.05
Matches are distributed among these distances:
840 3 0.00
841 3 0.00
842 1 0.00
843 4 0.00
844 2 0.00
847 2 0.00
848 2 0.00
850 5 0.00
851 1 0.00
853 2 0.00
856 3 0.00
857 2 0.00
859 1 0.00
860 1 0.00
861 1 0.00
862 1 0.00
864 1 0.00
865 20 0.00
866 419 0.07
867 365 0.06
868 1 0.00
869 4 0.00
870 207 0.03
871 170 0.03
872 235 0.04
873 5 0.00
874 90 0.02
875 443 0.07
876 647 0.11
877 32 0.01
878 9 0.00
879 217 0.04
880 2 0.00
881 13 0.00
882 70 0.01
883 41 0.01
884 45 0.01
885 7 0.00
886 1 0.00
887 7 0.00
888 7 0.00
890 1 0.00
891 5 0.00
892 8 0.00
893 523 0.09
894 209 0.03
895 806 0.13
896 11 0.00
897 14 0.00
898 236 0.04
899 196 0.03
900 758 0.13
901 101 0.02
902 7 0.00
903 12 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCAGCACGCAG
AGAGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCGGACTGGACCAGGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCT
GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACAGCGGCATTGGGG
TTCCGGCGATCGGGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
TATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGA
TCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAA
AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATG
TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
Found at i:3674467 original size:26 final size:26
Alignment explanation
Indices: 3674431--3674483 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3674421 GTTGACTTAG
3674431 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
3674457 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
3674483 G
1 G
3674484 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:3675954 original size:876 final size:874
Alignment explanation
Indices: 3671790--3679330 Score: 8642
Period size: 900 Copynumber: 8.5 Consensus size: 874
3671780 CCAGTCTAAA
* * * ** *
3671790 CATACGAAGTTAATTCCCAGTCTAAG-ATCGAATTAGAC-CGAGGGTTG-CGGTAGCACATGCTG
1 CATACGGAGTTCATTCCCAGTCTAAGCATCGGATCGGACTAGAGGG-TGACGGTAGCACATGCTG
* *
3671852 GGCT-GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGAA
65 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GAGCATCATCGGA
* ** * * * *
3671916 GAACCTGAACGATGACATTGCGGTTCCGACGATTGGGCGGGCCGAGGGGGTGTACGCACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCC-AGGGGGTGTGCGCACATGATG
*
3671981 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* *
3672046 ACACCCCCTTAAAGAGCATGTGAGATTTTACGGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
3672111 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** *
3672176 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
3672241 AAATTTCAAAAAATC-CTGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGGCGT
452 AAATTTTAAAAAATCTC-GAACT-CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
3672305 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
3672370 GCATTGTCACGCAGAATTATGAAGACGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTT
580 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
3672435 GCGCATCCCGTCTTTCTGGCCGACG-CG-G--TGCCCG--CCCGCCCGCTCGTTTCGTCAGTTGG
645 GCGTATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGG
* * * *
3672494 CTTAGGCATACGGAGTT-ATTCCCAATCTAACATCA-GACCAGACTGAGGGTTGCAGCAGCAGGA
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACCAGACCGAGGGTTGCGGCAGCAGGA
* * * *
3672557 TC-GATAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCTCATCCCACCCCTCTGGCCGGC
774 TCAG-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
3672621 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
838 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
3672658 CATACGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAGGATCGGAATGGACC
1 CATACGGAGTTCATTCCCAGTCTAAGCAT-C-G-G---------A-TC--GGA-C----T--A--
* * * * * * * * *
3672723 AAGGGTTACGGCAGCACATGCTGGGCTCGAGAATGTGTTGGTGCTGCATTTCTT-TTTGTCGAGG
42 GAGGGTGACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT-TTCTTCGTCGGGG
* * * *
3672787 CACCATCGTCGGAGCATCGTCGGAGAACCTGATCGGCGGCATTGGGGTTTCGGCGATCGGGGGGC
106 CACCATCGTC-GAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGC
* *
3672852 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATC
170 CAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
3672917 CCTCATCAAACCTCGAGAACTCACACCTCCTTCAAGAGCATTTGAGATTTTATAGGTTTGCTGCC
235 CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * * *
3672982 AGTAGCCATTAATGTGTATAAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
300 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
3673047 CGAGTTTTTAGCTGAATTTTTTTGGGAATGCCATCAAAAATACAAGGATCACCTCTACCAAGTTT
365 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTT
* * * * * **
3673112 GGTGTCGAAACTCCTTCC-AAAAAACTTTTAAAAGATCTCGAACCACAAAAAGTTTTGAAAATCA
430 GGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCTCGAA-CTCAAAAAGTTTCAAAAATCA
3673176 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
493 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
3673241 GAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATAAAGATGTGCCTAAACCCACCTA
558 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* *
3673306 CCACCCTATCGATCCACAGCTTGCGTTTCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
623 CCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CC-C
* * *
3673371 CCGCACGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATTGGACCA
686 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCA
* * * * ** * * * * *
3673435 GACCGATGGTTGCGGTAGCAGGAT---CAGTAC-CATA--CAGACCCAACCGATTCTCGGCGTAC
751 GACCGAGGGTTGCGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* * * *
3673494 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGTACGCTCATTTCGTGAGTTGACTTAGG
816 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * *
3673553 CATACAGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAGGATCGGACTGGACC
1 CATACGGAGTTCATTCCCAGTCTAAGCAT-C-G-G---A-T--CGGACTA-GA--GG-GT-GA-C
* * * ** * *
3673618 AGGGGTTGCGGCAGCACATGCTGGGCTTGGGAATGTGTTGGTGCTACATTTTTTTTCGTCAGGGC
51 ---GG-T-----AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * *
3673683 ACCATCGTCGGAGCATCGTCGGAGAACCTGATCAGCGGCATTGGGGTTCCGGCGATCGGGGGGCC
107 ACCATCGTC-GAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC
* * * * * * *
3673748 AGGGGTTGTACGCCCATGATGTGCAATAGGTGCTGGTACTTGACCCTTATATTGGTCCCCTATCC
171 AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * * * * *
3673813 CCCATCAAACCTCGAGAACTCACACCCTCTTAAAGTGCATTTGAGATTTTATAGGTTTGTTGCCA
236 CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
3673878 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTT
301 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * * *
3673943 GAGTTTTTAGCTGAATTTGTTTGTGCAAGCCAAAAAAAATACAAAGATCACGTCTACCAAGTTTG
366 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTG
*
3674008 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CGGAAC-CGTAAAAAGTTTCAAAAATCG
431 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACTC--AAAAAGTTTCAAAAATCA
* * ** *
3674071 TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCGCGTGATCGCTTAAGGGACAATTGTAT
493 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * * *
3674136 GAATTTACAAGCCATAAAAATGGCATTGCCATGTAGAAATATAAAGATGTACCTAAACCCACCTA
558 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* ** *
3674201 CCACCCTATCGATCCACGGCTTGCGCATCCTATCTCTCTGGCCGACGTAGT--------G--CCC
623 CCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCC
* * * *
3674256 GCCCGCTCGTTTCGTCGGTTGGCATAGGCATACGGAGTTCATTCCCAGTCTAACACCA-AACCAG
688 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TAGGACCAG
* * * *
3674320 ATCGAGGGTTG-GGACAGCAGGATTAGCAGCACACAGA--AGG----G---GA--CCCGGCTTGC
752 ACCGAGGGTTGCGG-CAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* *
3674373 GCATCCCGCCCCTCTGGCCGACTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
816 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
3674432 CATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCAGATCAGACC
1 CATACGGAGTTCATTCCCAGTCTAAGC--ATCG-G---A-T-C--G-----GA-C---T-AGA--
* * *
3674497 GAAGGTTG-CAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGG
44 G--GG-TGACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * * * *
3674561 CACCATCATCGAAGAATCGTCGGAGAACCTGACAC-GCGTCATTAGGGTTTCGATGATC----GG
106 CACCATCGTCG-AGCATCATCGGAGAACCTGAC-CGGCGGCATTGGGGTTCCGACGATCGGGGGG
3674621 -C--GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
169 CCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
3674683 ACCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
234 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * * *
3674747 CAGTAGCAAGTAAAGTGTCTAAAATAGCGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
299 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* **
3674812 TCAAGTTTTTAGCTGAATGATTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTT
364 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTT
*
3674877 TGGGGCCAAAACTCCATT-C-AAAAAATTTTAAAAAATCTCGAACTGGAAAAAGTTTCAAAAATC
429 TGGGGCCAAAACTCC-TTCCGAAAAAATTTTAAAAAATCTCGAACT-CAAAAAGTTTCAAAAATC
* * *
3674940 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTCTA
492 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
3675005 TGAATTCACAAGCCATAAAAATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCT
557 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * ** *
3675070 ACCACCCTATCGATCCACGGCTTGCGTATCCCATCCCTCTGGTCGATGTAGTTCCCGCCCGCCCA
622 ACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-
* * * *
3675135 CCTGCCCGCTCGTTTCGTCGATTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACT
686 CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACC
* ** ** * * * *
3675200 GGACTAAGGGTTGCGATAGCAGGATCAGCAGCACACAAAGGGGGACCCGACCGATCCCTGGCCTG
750 AGACCGAGGGTTGCGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * * **
3675265 CGTA-CCACACCCCTCTGGCCGGTTGAGCGCCCATACGCTCGTTTCGTGGGTTGACTTAGG
815 CGCATCC-CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
*
3675325 CATACGAAGTTCATTCCCAGTCTAAG-ATCGGATCGGACT-GAGGGTGACGGTAGCACATGCTGG
1 CATACGGAGTTCATTCCCAGTCTAAGCATCGGATCGGACTAGAGGGTGACGGTAGCACATGCTGG
* * * * *
3675388 GCTCGGGCATGTGCTGCTGCCGTATTTTTCTTCATCGGGGCACCATGGCCAGAGCATCATCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GAGCATCATCGGAG
* * * * *
3675453 AACCTGACCGGTGGCATAGGGGGTCCGACGATCGGGGGGTCAGGGGGTGTTCGCACATGATGTGC
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
3675518 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
*
3675583 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
** * * *
3675648 GAAACACTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTAT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
**
3675713 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
*
3675778 TTTTAAAAAATCTCGAA-TCATCGAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
455 TTTTAAAAAATCTCGAACTCA--AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
3675842 GCCATGAAACTTCATGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
3675907 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGCTTGCA
583 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
3675972 TATCCCGTCTCTCTGGTCGGCGTAGTGCCTGTCGACCCG--CCCACCCGCTCGTTTCGTCGGTTG
648 TATCCCGTCTCTCTGGCCGGCGTAGTGCC---CG-CCCGCCCCCGCCCGCTCGTTTCGTCGGTTG
* * * * *
3676035 GCTTAGGCATACGGAGTTCCTTCCTAGTCTAAGATAGGACCGGACGGAGGGTTGCCGCAGCAGGA
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTGCGGCAGCAGGA
** * * * *
3676100 TTGGCAGCACGCAGAGGGGGACCCAACCGATCCCCAGCTTCCGTATCCCGCCCCTCTGGCCGGCT
774 TCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
3676165 GAGCGCCCCCACGCTCGTTTCATGGGTTGACTTAGG
839 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * * * * * *
3676201 CATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGGAC-CGAGTGTTACGGCAGCTCATCCTGG
1 CATACGGAGTTCATTCCCAGTCTAAGCATCGGATCGGACTAGAGGGTGACGGTAGCACATGCTGG
* * * *
3676264 GCTCGGGCATATGTTGGTGCCGTATTTTTCTTCATCGGGGCACCA---TC--G-----TCGGAGA
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAGCATCATCGGAGA
* ** * *
3676319 ACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACAGGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-AGGGGGTGTGCGCACATGATGTG
* * *
3676384 CGATGGGTGCTGGTACTTGGACCTTCTATTGGCCCTCTATCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
*
3676449 ATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
**
3676514 GGAAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** * *
3676579 TTCATGCCAA-AAACAATACGGGGATCACATCTACCAAGTTTGGGGCCAAAACTTCTTCCAAAAA
389 TGCATGCCAACAAA-AATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
3676643 AATTTT-AAAAATCTGGAAC-CGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
453 AATTTTAAAAAATCTCGAACTC--AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
3676706 TTGCCATGAAACTCCACGTGAAGGCTTAAGAGG-CCATTGTATGAATTTATAAGCCATAAAAATG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAG-GGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
3676770 GCATTGGCATGCAAAAATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCACGGCTT
580 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
3676835 GCGCT-TTCCGTCTCTCTGGCCGGCATAGTGCCTGCCCGCCTGCCCACCCACTCATTTCGTCGGT
645 GCG-TATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC--CCCGCCCGCTCGTTTCGTCGGT
* * * *
3676899 TGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATAGGACCAGACCGAGGGTTGCGGTAGTAG
707 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTGCGGCAGCAG
** * * *
3676964 GATTGGCAGCATGCAGAGGGGGACCC-AGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCG
772 GATCAGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
3677028 GCTGAGCGCCTGCACGCTTGTTTCATGGGTTGCCTTAGG
836 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * *
3677067 CATACGGAGTTCATTCCCAGTCCAAG-ATCGGA-CTGGACCA-AGGGTTACGGTAGCTCATGCTG
1 CATACGGAGTTCATTCCCAGTCTAAGCATCGGATC-GGACTAGAGGGTGACGGTAGCACATGCTG
* ** * * * *
3677129 GGCTCGAGCATACGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGGCGTAGCATCACCGGA
65 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG-AGCATCATCGGA
* * * * * * * *
3677194 CAACTTGACCGACGGAATTGGGGTTCC-AGCAATTGGTGGGGTC-GGGGGGGTGCGCACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGG-GGGGCCAGGGGGTGTGCGCACATGATG
* * * * *
3677257 TGGGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCTTCATCAAACCTTAAGAAATC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* *
3677322 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
3677387 ATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
3677452 TATGCATGCGAAAAAAAATACAGGGATGATATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * ** * *
3677517 AAATTTTAAAAACTCTCAAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACCAGTCATC
452 AAATTTTAAAAAATCTCGAA-CTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
3677582 TTGCCATGAAGCTTCACGTGAAGGCGTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
3677647 CATTGGCACGTAGAAATATGAAGATGTGCCTAAGCGCACCTACCACCCTATCGATCCACGGCTTG
581 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
3677712 CGCT-TCTCGTCTCTCTGGCTGGCGTAGTGCCCGCCCG--CCCACCCGCTCATTTCGTCGGTTGG
646 CG-TATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * *
3677774 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATAGGATCGGACCGAGGGTTGCGGCAGTAAGAT
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTGCGGCAGCAGGAT
** * * * *
3677839 TGGAAGCACGCAGAGGGGGACTCAACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTG
775 CAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
*
3677904 AGCGCCCGCACGCTCGTTTCGTGGGTTGCCTTAGG
840 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * ** *
3677939 CATACAGAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTCCAACTCTAAGATTGGACTGGACC
1 CATACGGAGTTCATTCCCAGTCTAAGCAT-C-G-G---A-TCGGA--CT-AGA--GG-GT-GA-C
* * * * * * *
3678004 GAGGGTTGTGGAAGCTA-ATGCTGGGTTTGGGCATATGCTGGTGCTGTATTTTTCTTTGCCGGGG
51 ----G--GT---AGC-ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * ** ** ** *
3678068 CACCATCGCCGAAGCACCGCCGGAGAACCTGACCGATGAAATTAGGGTTCCGACGATCGGGGGGG
106 CACCATCGTCG-AGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG
* * *
3678133 CCGGGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTA
169 CC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
3678198 TCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
233 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
3678263 CCAGTAGCCATTAAAGTGTCTGAAAT--GGACACTTTTTTCAAATGGTCACAAAATCTCGTACAC
298 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * ** * *
3678326 TTCAAGTTTTTAGCTGAATTTTTTTATGCATGGAAAAAAAAAAACAGAGGGATCACATCTACCAA
363 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA-A-GGATCACATCTACCAA
* * * **
3678391 GTTTTGGGCCAAAACTCCTTCCGAAAAAATTTGAAAAAATCTCGAACCGCAAAAAGTTTTGAAAA
426 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAA-CTCAAAAAGTTTCAAAAA
* * * *
3678456 TCGTGGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGGCCATTG
490 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
** *
3678521 TATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTACCTAAACCCAC
555 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
*
3678586 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--
620 CTACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * * * * *
3678649 CCCGCCCGCTCATTTCGTCGGTTGGCTTGGGCATACGAAATTAATTCCCAGTCTAAGATTGGACC
685 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACC
* * * * * * *
3678714 GGACCGAGGGTTGAGGTAGTAGGATC-GACAGCATGCAGAGGGGGACCCGACTGATCCTCGGCTT
750 AGACCGAGGGTTGCGGCAGCAGGATCAG-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
* * *
3678778 GTGCATCCTGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
814 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
3678839 CATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCGTTCCCAGTCTAAGATCGGACCAAACC
1 CATACGGAGTTCATTCCCAGTCTAAGCAT-CGGA--TCG------GACT-AGA--GG--------
* * * **
3678904 GATGGTTACAGTAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCACCGGGGC
46 G-T-G--ACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * *
3678969 ACCATCATCGGAGCATCACCGGAGAACTTGACCGGCGGCATTGGGGTTTCGGCGATCGGAGGGGC
107 ACCATCGTC-GAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGC
* * *
3679034 C-GGGGTGTGGGCGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCACCTAT
170 CAGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
3679098 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
234 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
**
3679163 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAT-GTCACAAAA-AATGTACAC
299 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACAC
* * * *
3679226 TTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAATAAAAATACAAGGTTCCCATCTACCAAGT
363 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAG-
*
3679291 TTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATC
427 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
3679331 CCGACGATCG
Statistics
Matches: 5775, Mismatches: 663, Indels: 439
0.84 0.10 0.06
Matches are distributed among these distances:
862 4 0.00
863 1 0.00
865 35 0.01
866 468 0.08
867 362 0.06
868 26 0.00
869 4 0.00
870 205 0.04
871 171 0.03
872 276 0.05
873 5 0.00
874 89 0.02
875 438 0.08
876 662 0.11
877 42 0.01
878 6 0.00
879 189 0.03
880 7 0.00
881 9 0.00
882 86 0.01
883 49 0.01
884 40 0.01
885 5 0.00
886 5 0.00
887 7 0.00
888 8 0.00
889 13 0.00
890 5 0.00
891 5 0.00
892 8 0.00
893 531 0.09
894 34 0.01
895 733 0.13
896 11 0.00
897 8 0.00
898 190 0.03
899 188 0.03
900 737 0.13
901 99 0.02
902 7 0.00
903 2 0.00
908 3 0.00
909 1 0.00
910 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (874 bp):
CATACGGAGTTCATTCCCAGTCTAAGCATCGGATCGGACTAGAGGGTGACGGTAGCACATGCTGG
GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAGCATCATCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCTCGAACTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTGCGGCAGCAGGATCAGCAG
CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGG
Found at i:3677988 original size:26 final size:26
Alignment explanation
Indices: 3677938--3677990 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
3677928 GTTGCCTTAG
*
3677938 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCACTCTAA
*
3677964 GCATACGGAGTTCA-TTCCAACTCTAA
1 GCATACAGAGTTCATTTCC-ACTCTAA
3677990 G
1 G
3677991 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCACTCTAA
Found at i:3678874 original size:26 final size:26
Alignment explanation
Indices: 3678838--3678890 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3678828 GTTGACTTAG
3678838 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
3678864 GCATATGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3678890 G
1 G
3678891 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3681704 original size:26 final size:26
Alignment explanation
Indices: 3681668--3681720 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3681658 GTTGCCTTAG
*
3681668 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3681694 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3681720 G
1 G
3681721 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3683437 original size:734 final size:735
Alignment explanation
Indices: 3682374--3683765 Score: 2123
Period size: 734 Copynumber: 1.9 Consensus size: 735
3682364 AGGCATACGG
* ** *
3682374 AGTTCATTCCCGATCTAAGATCGGATCAGATGGAGGGTTGCGGCAGCACATGCTGGGCTCCGGCA
1 AGTTCATTCCCGATCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCCGGCA
* * * * * *
3682439 TGTGCTGGTGCCACATTTTTCTTTGCCAGGGCACCATCGTCGGAACATTGTCGGAAAACCTAACT
66 TGTGCTGGTGCCACATTCTTCTTCGCCAGGGCACCATCGCCAGAACATCGTCGGAAAACCTAACC
* * * **
3682504 GGCGGCATTGGTGTTTCGATGATCGGGGGTGTCGGGGGGGGTGTGCCCACATGATGTGTGATGGG
131 GGCGGCATTGGGGTTTCGATGATCGGGGGTGCCGGGGGGGGTATGCCCACATGATGTACGATGGG
* * * *
3682569 TGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
196 TGCCGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCAAAAACGCACACCCCCT
* * *
3682634 TAAAGAGCATTTGAGATTTTACAGGTTTGGTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACA
261 TAAAGAGCATTTGAGATTGTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAATGGGGACA
3682699 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
326 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
3682764 CAAGAAAAATACAAGGACCATGTCTACCAAGTTTCGG-GCCAAAACTCCTTCCGAAAAAATT-TA
391 CAAAAAAAATACAAGGACCACGTCTACCAAGGTT-GGAGCCAAAACTCCTTCCGAAAAAATTAAA
* **
3682827 AAAAATC-CTGAACCGTAAAAAGTTTCAAAAATCATG-AAAAATAGAAAACAAGTTGTCTTGCCA
455 AAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAAATAGAAAACAAGTCATCTTGCCA
* * * *
3682890 TGAAACTTCACGTGAAGGCTTATGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGG
519 TGAAACTTCACGTGAAGACTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGG
* * * * *
3682955 CACATAGAAATATGAAGATGTGTCTAAAGCCACCTACCACCCTATCGATCCATGGCTTGCGCATC
584 CACAGAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
*
3683020 CCGTCTCTCTAGTCGGCTATGCGTCCGCATGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTT
649 CCGCCTCTCTAGTCGGCTATGCGTCCGCATGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTT
3683085 CATTCCCAGTCTAAGCATACAA
714 CATTCCCAGTCTAAGCATACAA
* *
3683107 AGTTCATTCCC-AGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGC
1 AGTTCATTCCCGA-TCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCCGGC
* * * *
3683171 ATGTGCTGGTGCCACATTCTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTC-GAAGAACCTGA
65 ATGTGCTGGTGCCACATTCTTCTTCGCCAGGGCACCATCGCCAGAACATCGTCGGAA-AACCTAA
* **
3683235 CCGGCGGTATTGGGGTTTCGATGATCGAGGGG-GCCGAGGGGGGGTATGCGTACATGATGTACGA
129 CCGGCGGCATTGGGGTTTCGATGATCG-GGGGTGCCG-GGGGGGGTATGCCCACATGATGTACGA
*
3683299 TGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAAAACGCACACC
192 TGGGTGCCGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCAAAAACGCACACC
* *
3683364 CCCTTAAAGGGCATTTGAGATTGTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGG
257 CCCTTAAAGAGCATTTGAGATTGTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAATGGG
*
3683429 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGC
322 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
3683494 ATGCCAAAAAAAATACTAGGATCACGTCTACCAAGGTTGGAGCCAAAACTCCTTTCGAAAAAATT
387 ATGCCAAAAAAAATACAAGGACCACGTCTACCAAGGTTGGAGCCAAAACTCCTTCCGAAAAAATT
** ** *
3683559 AAAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATTGTGAAAAAATAGAAAACGAGTCATCTTGC
452 AAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAATAGAAAACAAGTCATCTTGC
3683624 CATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATT
517 CATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATT
**
3683689 GGCATGGAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
582 GGCACAGAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
3683754 TCCCGCCTCTCT
647 TCCCGCCTCTCT
3683766 GGCTGGCGTA
Statistics
Matches: 589, Mismatches: 62, Indels: 13
0.89 0.09 0.02
Matches are distributed among these distances:
732 4 0.01
733 136 0.23
734 266 0.45
735 30 0.05
736 153 0.26
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (735 bp):
AGTTCATTCCCGATCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCCGGCA
TGTGCTGGTGCCACATTCTTCTTCGCCAGGGCACCATCGCCAGAACATCGTCGGAAAACCTAACC
GGCGGCATTGGGGTTTCGATGATCGGGGGTGCCGGGGGGGGTATGCCCACATGATGTACGATGGG
TGCCGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCAAAAACGCACACCCCCT
TAAAGAGCATTTGAGATTGTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAAAAAAAATACAAGGACCACGTCTACCAAGGTTGGAGCCAAAACTCCTTCCGAAAAAATTAAAA
AAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAATAGAAAACAAGTCATCTTGCCATG
AAACTTCACGTGAAGACTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCA
CAGAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GCCTCTCTAGTCGGCTATGCGTCCGCATGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGCATACAA
Found at i:3684016 original size:26 final size:26
Alignment explanation
Indices: 3683980--3684032 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3683970 GTTGACTTAG
3683980 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3684006 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3684032 G
1 G
3684033 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3686989 original size:899 final size:901
Alignment explanation
Indices: 3683008--3688256 Score: 6698
Period size: 899 Copynumber: 5.9 Consensus size: 901
3682998 ATCGATCCAT
* * * ** *
3683008 GGCTTGCGCATCCCGTCTCTCTAGTCGGCT-ATGCGTCC-GCATGCTCGTTCCATGGGTTGACTT
1 GGCTTGCGCATCCCGCCCCTCTGGTCGGCTGA-GCG-CCAGCACACTCGTTTCATGGGTTGACTT
** * *
3683071 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCGG
64 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* *
3683136 ACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTCTTCTTCGTCGG
129 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGG
* * * * * * * *
3683201 GGCACCATCGCCAGAGCATCGTCGAAGAACCTGACCGGCGGTATTGGGG-TTTCGATGATCGAGG
194 GGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCAGCATTGGGGATTCCGACGATCG-GG
* * * *
3683265 GGGCCGAGGGGGGGTATGCGTACATGATGTACGATGGGTGCCGGTACTTGGCCCTTATATTGGCC
258 GGGCCGA--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * * *
3683330 CCCTATCCCTCATCAAACCTCAAAAACGCACACCCCCTTAAAGGGCATTTGAGATTGTACAGGTT
321 CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
3683395 TGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
386 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
3683460 TACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAAAAAAAATACTAGGATCACGTCTAC
451 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
* ** **
3683525 CAAGGTTG-GAGCCAAAACTCCTTTCGAAAAAATTAAAAAAAATCTCGAACCGCAAAAAGTTTTG
516 CAAGTTTGAG-GCCAAAACTCCTTTC-AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCA
* *
3683589 AAAATTGTGAAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTG-AAGACTTAAGGGA
579 AAAATCGTG-AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAG-CTTAAGGGA
* * * * *
3683653 CCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGGAAAAATATGAAGATGTGCCTAA
642 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAA
* * *
3683718 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCTGGCGTAGTGCCCG
707 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG
* * * *
3683783 CCCGCCCTCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCTCAGTCTAAG
772 CCCG-CCTGCC-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * *
3683848 ATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGATAGCATGCAGAGGGGGACCGGGCTGATCC
835 ATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACTGATCC
3683913 CC
900 CC
* * * * * * * *
3683915 GGCTTGCGTATCCTGCCCCTCTGGCCGACTGAGCACCCA-CACGCTCTTTTCGTGGGTTGACTTA
1 GGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGC-GCCAGCACACTCGTTTCATGGGTTGACTTA
* * *
3683979 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATC-GAATCGG
65 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAG
* * *** * *
3684043 ACCGAGGGTTGTGGCAGCAGATGCTGGGCTCGGGCATGTGCTGGTGGTGCATTTTTCTTGGCCGG
129 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGG
* * * * * * *
3684108 GGCACCATCGTCGGAGCATTGTCGGAGAAACTGACCGAC-GACATTAGGG-TTTCGGCGATCGGT
194 GGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCAG-CATTGGGGATTCCGACGATCGG-
*
3684171 GGGGTCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT-GCCCTTATATTGGCC
257 GGGGCCGA-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * * * *
3684235 ACCTATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAAAGCATTTGAGATTATACAGGTT
321 CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
3684300 TGCTGCCAGAAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTG
386 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
*
3684365 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
451 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
* * * ** * * * * **
3684430 CAAGCTTGTGTCCAAAAC-GATTTCTGAAAAAATTTAAAAAAATCCCGAACCGTAAAAATTTTTG
516 CAAGTTTGAGGCCAAAACTCCTTTC--AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCA
*
3684494 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
579 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACC
* * *
3684559 ATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGATGATGTGA-CTAAA
644 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT-ACCTAAA
* * *
3684623 CCCACCGACCACCCTATCGATCCACGGCTTGCGCATTCCGTCTCTCTGGCTGACGTAGT----GC
708 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
* * * * *
3684684 CCG-CT-CGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAACATC
773 CCGCCTGCCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * *
3684747 AAATTGGA-TCGAGGGATGCGGCAGCAAGAAT-GGCAGCACGCA-AGGGGGACCTGACTGATCCC
838 AGATCGGACT-GAGGGTTGCGGCAGC-AGGATCGACAGCACGCAGAGGGGGACCCGACTGATCCC
3684809 C
901 C
* * * *
3684810 GGCTTGGGCATCCCGCCCCTCTGGTCGGCTGAACG-CAG-GCA--CG-CTCA----TT---TTA-
1 GGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCAGCACACTCGTTTCATGGGTTGACTTAG
* * **
3684862 --AT--GG-GTTGA----C--T-TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGAC
66 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* ** * * *
3684915 CGAGGGTTGTGATAGCACATGCTGGGCTCGGGCATGTGCGGGTTCCACATTTTTCTTTGTCGGGG
131 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
* * *
3684980 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGAC-GACATTGGGG-TTACGACGATCGGGGG
196 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCAG-CATTGGGGATTCCGACGATC-GGGG
**
3685043 GGTTGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
259 GGCCGA-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
3685108 CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
323 CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
3685173 CTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAGTCTTGTA
388 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
3685238 CACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCA
453 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* * * * *
3685303 AGTTAGCGGCAAAAACTCCTTCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
518 AGTTTGAGGCCAAAACTCCTTTCAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAA
* * * *
3685368 TCATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGT-AAAGGCCTAAGGGACCATT
583 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAA-GCTTAAGGGACCATT
* * * *
3685432 GTAGGAATTCACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCA
647 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCCA
* * * * *
3685497 CCTACCACCCTATCGATCCATGGCTTGCACATCTCGTCTCTCTGGCCGGCGTAGTGCCCGGCCGC
712 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
3685562 CTG--CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGG
777 CTGCCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA--G
** * * *
3685624 AT-GGACTGAGGGTTATGGCAGCAGGATTGACAGCACACAGAGGGGGACCCGACTAATCCCC
840 ATCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACTGATCCCC
* * * * *
3685685 GACTTGCGCATCCCGCCCCTCTGG-CTGGCTGAGCGCCCGCACGCTCGTTTCGTGGTTTGACTTA
1 GGCTTGCGCATCCCGCCCCTCTGGTC-GGCTGAGCGCCAGCACACTCGTTTCATGGGTTGACTTA
* * * *
3685749 GGCATACGGAGTTCATTCCCAGTTTAAGCATACGAAGTTCATTCCCAGTCTATGATCAGACTAGA
65 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * *
3685814 CCGAGGGTTGCGGCAGCACACGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCATCGCCGGG
130 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGG
* * * * * * * * *
3685879 GGACCATCGTCAGAGCATTGCCAGAGAACCTGACCAGCGGCATTGGGG-CTCCAATGATCGGGGG
195 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCAGCATTGGGGATTCCGACGATC-GGGG
3685943 GGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
259 GGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
3686007 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
324 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
3686072 TGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGTAC
389 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
3686137 ACTTCGAATTTTTAGTTGAATTTTTTTGTTCATGCCAAAAAAAATACAAGGATCACGGCTACCAA
454 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* *
3686202 TTTTGAGGCCAAAACTCCTTTCAAAAAGATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
519 GTTTGAGGCCAAAACTCCTTTCAAAAA-ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAA
* *
3686267 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAACCTTAAGGGACCATTG
583 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTG
* ** * *
3686332 TATGAA-TTACAAGCCATAAAAATGGTATTGGCACATAGAAATATGAAGATGCACCTAAAGCCAC
648 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCCAC
* * * * *
3686396 CTACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCGGGCCGGCGTAATGCCCGCCCTCC
713 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
3686461 TGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
778 TGCCC-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * ** *
3686526 TCAGACTGA-GGTTGCGGCAGCAGGATCGGCAGCACATAGAGGGGGACCCGACCGATCCCC
841 TCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACTGATCCCC
* * * * * * *
3686586 GGCTTGCCCATCCCGCCTCTCTAGTCGGCTCAGCGCCAGCACACTTGTTTCATTGGTTGACTTGG
1 GGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCAGCACACTCGTTTCATGGGTTGACTTAG
* * * * **
3686651 GCATACGGAGTTCATTTCCAGTCTAAGCATGCAGAGTTCATTCCCAGTCTAAGATTAGACTGGAC
66 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
** * * *
3686716 CGAGGGTTGCGATAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGG
131 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
* * * * *
3686781 CACGATCGTCGGAGCATCACCGGAGAACCTGACCGGTAGCATTGGAG-TACCGACGAT-GGGGGG
196 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCAGCATTGGGGATTCCGACGATCGGGGGG
*
3686844 CCGA-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTA
261 CCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
3686908 TCCCTCATCAAATCTCGAGAACTCACACCCCCTTAAAGCA-CATTTGAGATTTTACAGGTTTGCT
326 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG-AGCATTTGAGATTTTACAGGTTTGCT
* *
3686972 GCCTGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACA
390 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * * * * *
3687037 CTTTGATTTTTTTA-CGGTATTTTTTTGTGGATGCCAACAAAAATACAAGGATCATGTCTACCGA
455 CTTCGA-GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * * **
3687101 GTTTGGGGCCAAAACTCCTTCTGAAAAAACTTTAAAAAATCTCGAAAGGCAAAAAGTTTCAAAAA
519 GTTTGAGGCCAAAACTCCTT-TCAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAA
* * * *
3687166 TCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTG
583 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTG
* *
3687231 TATGAATTTATAGGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCCAC
648 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCCAC
* *
3687296 CTACCACCCTATCGAT-CACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCC
713 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * * *
3687360 CGCCCACCCGCTCGTTTCGTCAGTTGGCTTCGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
778 TG-CC-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * *
3687425 -CTAGA-TCGAGGGTTGCAGTAGCAGGATCAACAGCACGCAGAGAGGGACCTGGCTGATCCCC
841 TC-GGACT-GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACTGATCCCC
* * * * * * * * * *
3687486 GACTTGCACATCCCGTCCCTTTGGCCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTAACATAG
1 GGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCAGCACACTCGTTTCATGGGTTGACTTAG
* * *
3687551 GCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCAGAC
66 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * ** * * * * *
3687616 CGAGGGTTGCGGTAGCACATGCTAGGCTCGAACATGTGCTGGTGTCAGATTTTTCTTCGCCAGGA
131 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
** * *
3687681 CACCATCACCGGAGCATCACCGGAGAACCTGACCGGCGGCATT-GGGATTCCGACGATCGGGGGG
196 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCAGCATTGGGGATTCCGACGATC-GGGGG
* * * *
3687745 GTCG-GGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACCTGGCTCTTATATTGGCCCCCT
260 GCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
3687809 ATCCCTCATCAAACCTTGAA-AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTAC
325 ATCCCTCATCAAACC-TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
3687873 TGCCAGTAGCCATTAAAGTGTCTGTAATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTAC
389 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
3687938 ACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATG-CAAACAAAAATACAGGGATCACGTCTACCA
454 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA-AAAAATACAAGGATCACGTCTACCA
* * * *
3688002 AGTTT-AGGGCCAAAACTCCATTGAAAAAAGTTTTAAAAAATCTCGAACCGCAAAATGTTTCGAA
518 AGTTTGA-GGCCAAAACTCCTTTCAAAAAA-TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAA
* * *
3688066 AATCCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCAT
581 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCAT
* *
3688131 TGTATGAATTTACAAGCCACAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
646 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCC
* *
3688196 ACCTACCACCCTGTCGCATCCACGGCTTGGCGCATCCCGTCTCTCTGGCCGACGTAATGCC
711 ACCTACCACCCTATCG-ATCCACGGCTT-GCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
3688257 GTCCGCGATC
Statistics
Matches: 3797, Mismatches: 456, Indels: 180
0.86 0.10 0.04
Matches are distributed among these distances:
869 2 0.00
870 389 0.10
871 216 0.06
872 3 0.00
873 6 0.00
874 80 0.02
875 54 0.01
876 2 0.00
877 5 0.00
878 2 0.00
879 2 0.00
880 4 0.00
883 3 0.00
884 2 0.00
886 2 0.00
887 3 0.00
890 4 0.00
891 1 0.00
892 2 0.00
893 7 0.00
895 47 0.01
896 75 0.02
897 6 0.00
898 380 0.10
899 549 0.14
900 483 0.13
901 278 0.07
902 465 0.12
903 5 0.00
904 174 0.05
905 286 0.08
906 41 0.01
907 218 0.06
908 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
GGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCAGCACACTCGTTTCATGGGTTGACTTAG
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCAGCATTGGGGATTCCGACGATCGGGGGG
CCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
TTGAGGCCAAAACTCCTTTCAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCG
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGC
CCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA
CTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACTGATCCCC
Found at i:3687587 original size:26 final size:26
Alignment explanation
Indices: 3687551--3687603 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3687541 GTTAACATAG
3687551 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
3687577 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3687603 G
1 G
3687604 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3688664 original size:15 final size:15
Alignment explanation
Indices: 3688633--3688662 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
3688623 GCGATGGGTG
3688633 CTTAATATATTGGCC
1 CTTAATATATTGGCC
3688648 CTTAATA-ATTGGCC
1 CTTAATATATTGGCC
3688662 C
1 C
3688663 CTATCCCTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (15 bp):
CTTAATATATTGGCC
Found at i:3689590 original size:59 final size:59
Alignment explanation
Indices: 3689457--3689734 Score: 316
Period size: 59 Copynumber: 4.7 Consensus size: 59
3689447 TTGTGTAGGG
* *
3689457 AAATTGATACTTTCAACTTTTCCCTAAAAATA--TTTTTTGGAAATTTATTT-T-AGGA
1 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCTAAGGA
* *
3689512 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTGCAAAGGA
1 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCTAAGGA
* * * *
3689571 AAATTGATACTTTCGACTTTTCCTCAAAAATTTTTTTTTTTTTTTGAAAATTTATTTTTAAGGA
1 AAATTGATACTTTCAACTTTTCCCCAAAAA-----TATTTTTTTTGAAAATTTATTTCTAAGGA
* * * ** *
3689635 AAATGGATACTTTCAACTTTTTCCTAAAAATA-TTTTTCAGAAATTTTGATTT-TCAAGGA
1 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTT-ATTTCT-AAGGA
*
3689694 AGATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTG
1 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTG
3689735 GAACTTTTGA
Statistics
Matches: 186, Mismatches: 25, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
55 31 0.17
57 16 0.09
58 13 0.07
59 70 0.38
60 6 0.03
64 50 0.27
ACGTcount: A:0.33, C:0.12, G:0.09, T:0.46
Consensus pattern (59 bp):
AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCTAAGGA
Found at i:3689654 original size:123 final size:121
Alignment explanation
Indices: 3689457--3689733 Score: 338
Period size: 123 Copynumber: 2.3 Consensus size: 121
3689447 TTGTGTAGGG
* *
3689457 AAATTGATACTTTCAACTTTTCCCTAAAAATA-------TTTTTTGGAAATTTATTTTAGGAAAA
1 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTTTTTGAAAATTTATTTTAGGAAAA
* **
3689515 TTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTT-A-TTGCAAAGGA
66 TGGATACTTTCAACTTTTCCCCAAAAATA-TTTTTCAGAAAATTTGATTTGC-AAGGA
* * *
3689571 AAATTGATACTTTCGACTTTTCCTCAAAAATTTTTTTTTTTTTTTGAAAATTTATTTTTAAGGAA
1 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTTTTTGAAAATTTA-TTTT-AGGAA
* * * *
3689636 AATGGATACTTTCAACTTTTTCCTAAAAATATTTTTCAGAAATTTTGATTTTCAAGGA
64 AATGGATACTTTCAACTTTTCCCCAAAAATATTTTTCAGAAAATTTGATTTGCAAGGA
*
3689694 AGATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
1 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
3689734 GGAACTTTTG
Statistics
Matches: 136, Mismatches: 16, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
114 28 0.21
121 14 0.10
122 16 0.12
123 75 0.55
124 3 0.02
ACGTcount: A:0.34, C:0.12, G:0.08, T:0.46
Consensus pattern (121 bp):
AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTTTTTGAAAATTTATTTTAGGAAAA
TGGATACTTTCAACTTTTCCCCAAAAATATTTTTCAGAAAATTTGATTTGCAAGGA
Found at i:3689790 original size:16 final size:15
Alignment explanation
Indices: 3689770--3689831 Score: 63
Period size: 16 Copynumber: 3.9 Consensus size: 15
3689760 AATAGAATAA
3689770 TAAAAAAAATAAAAG
1 TAAAAAAAATAAAAG
* *
3689785 TGAAAATAAATAAAAA
1 T-AAAAAAAATAAAAG
3689801 TAAAAATAAA-AAAAG
1 TAAAAA-AAATAAAAG
3689816 TAAAACAAAAATAAAA
1 T-AAA-AAAAATAAAA
3689832 ATAAGATAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
15 10 0.26
16 22 0.58
17 6 0.16
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.15
Consensus pattern (15 bp):
TAAAAAAAATAAAAG
Found at i:3689801 original size:6 final size:6
Alignment explanation
Indices: 3689765--3689849 Score: 61
Period size: 6 Copynumber: 14.3 Consensus size: 6
3689755 AAGAAAATAG
* *
3689765 AATAATA AA-AAA AATAAA AGTGAA AAT--A AATAAA AATAAA AATAAA
1 AATAA-A AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
* * * *
3689811 AAAAGTAA AACAAA AATAAA AAT-AA GATAAA GATAAA AA
1 AATA--AA AATAAA AATAAA AATAAA AATAAA AATAAA AA
3689850 AATATTAAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 13
0.75 0.09 0.15
Matches are distributed among these distances:
4 4 0.06
5 7 0.11
6 46 0.72
7 2 0.03
8 5 0.08
ACGTcount: A:0.78, C:0.01, G:0.06, T:0.15
Consensus pattern (6 bp):
AATAAA
Found at i:3689811 original size:21 final size:21
Alignment explanation
Indices: 3689768--3689922 Score: 88
Period size: 22 Copynumber: 7.1 Consensus size: 21
3689758 AAAATAGAAT
*
3689768 AATAAA-AAAAATAAAAGTGAA
1 AATAAATAAAAATAAAAAT-AA
3689789 AATAAATAAAAATAAAAATAA
1 AATAAATAAAAATAAAAATAA
*
3689810 AA-AAAGT-AAAACAAAAATAAA
1 AATAAA-TAAAAATAAAAAT-AA
*
3689831 AATAAGATAAAGATAAAAA-AA
1 AATAA-ATAAAAATAAAAATAA
* * *
3689852 TATTAAATAAAACCTAATCTAATAA
1 -AATAAATAAAA-ATAA--AAATAA
*
3689877 ATATAAA-AACAAATAAAATAAAA
1 A-ATAAATAA-AAATAAAA-ATAA
*
3689900 AATAAATAAAGAA-ATAAATAA
1 AATAAATAAA-AATAAAAATAA
3689921 AA
1 AA
3689923 AAAAAACCTG
Statistics
Matches: 104, Mismatches: 14, Indels: 32
0.69 0.09 0.21
Matches are distributed among these distances:
20 13 0.12
21 27 0.26
22 31 0.30
23 17 0.16
24 8 0.08
25 8 0.08
ACGTcount: A:0.75, C:0.03, G:0.04, T:0.18
Consensus pattern (21 bp):
AATAAATAAAAATAAAAATAA
Found at i:3689840 original size:11 final size:11
Alignment explanation
Indices: 3689774--3689927 Score: 74
Period size: 11 Copynumber: 13.9 Consensus size: 11
3689764 GAATAATAAA
3689774 AAAAATAAAAGT
1 AAAAATAAAA-T
*
3689786 GAAAAT-AAAT
1 AAAAATAAAAT
3689796 AAAAATAAAA-
1 AAAAATAAAAT
*
3689806 ATAAAA-AAAGT
1 A-AAAATAAAAT
3689817 AAAACA-AAAAT
1 AAAA-ATAAAAT
*
3689828 AAAAATAAGAT
1 AAAAATAAAAT
*
3689839 AAAGATAAAA-
1 AAAAATAAAAT
* *
3689849 AAATATTAAAT
1 AAAAATAAAAT
*
3689860 AAAACCTAATCTAAT
1 AAAA-ATAA---AAT
*
3689875 AAATATAAAA-
1 AAAAATAAAAT
*
3689885 ACAAATAAAAT
1 AAAAATAAAAT
3689896 AAAAA-ATAAAT
1 AAAAATA-AAAT
3689907 AAAGAA-ATAAAT
1 AAA-AATA-AAAT
3689919 AAAAA-AAAA
1 AAAAATAAAA
3689928 ACCTGAAGCG
Statistics
Matches: 112, Mismatches: 17, Indels: 28
0.71 0.11 0.18
Matches are distributed among these distances:
10 34 0.30
11 51 0.46
12 18 0.16
14 3 0.03
15 6 0.05
ACGTcount: A:0.75, C:0.03, G:0.04, T:0.18
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:3689851 original size:26 final size:26
Alignment explanation
Indices: 3689790--3689851 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
3689780 AAAAGTGAAA
*
3689790 ATAAATAAAAATAAAAATAAAAAAAG
1 ATAAACAAAAATAAAAATAAAAAAAG
*
3689816 -TAAAACAAAAATAAAAATAAGATAAAG
1 AT-AAACAAAAATAAAAATAA-AAAAAG
3689843 ATAAA-AAAA
1 ATAAACAAAA
3689852 TATTAAATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
25 1 0.03
26 21 0.68
27 8 0.26
28 1 0.03
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.15
Consensus pattern (26 bp):
ATAAACAAAAATAAAAATAAAAAAAG
Found at i:3689879 original size:4 final size:4
Alignment explanation
Indices: 3689872--3689921 Score: 50
Period size: 4 Copynumber: 12.5 Consensus size: 4
3689862 AACCTAATCT
* *
3689872 AATA AATA TAA-A AACA AATAA AATA AA-A AATA AATA AAGA AATA AATA
1 AATA AATA -AATA AATA AAT-A AATA AATA AATA AATA AATA AATA AATA
3689920 AA
1 AA
3689922 AAAAAAACCT
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
3 5 0.13
4 28 0.72
5 6 0.15
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.18
Consensus pattern (4 bp):
AATA
Found at i:3689902 original size:12 final size:12
Alignment explanation
Indices: 3689773--3689928 Score: 69
Period size: 12 Copynumber: 12.9 Consensus size: 12
3689763 AGAATAATAA
3689773 AAAAAATAAAAGT
1 AAAAAATAAAA-T
*
3689786 -GAAAAT-AAAT
1 AAAAAATAAAAT
3689796 -AAAAATAAAAAT
1 AAAAAAT-AAAAT
3689808 AAAAAAAGTAAAA-
1 -AAAAAA-TAAAAT
*
3689821 CAAAAATAAAA-
1 AAAAAATAAAAT
* *
3689832 ATAAGATAAAGAT
1 AAAAAATAAA-AT
3689845 AAAAAAATATTAAAT
1 -AAAAAATA--AAAT
** **
3689860 AAAACCTAATCT
1 AAAAAATAAAAT
*
3689872 AATAAATATAAA-
1 AAAAAATA-AAAT
*
3689884 AACAAATAAAAT
1 AAAAAATAAAAT
3689896 AAAAAAT-AAAT
1 AAAAAATAAAAT
3689907 AAAGAAAT-AAAT
1 AAA-AAATAAAAT
3689919 AAAAAA-AAAA
1 AAAAAATAAAA
3689929 CCTGAAGCGG
Statistics
Matches: 110, Mismatches: 19, Indels: 30
0.69 0.12 0.19
Matches are distributed among these distances:
10 6 0.05
11 31 0.28
12 46 0.42
13 1 0.01
14 21 0.19
15 3 0.03
16 2 0.02
ACGTcount: A:0.76, C:0.03, G:0.04, T:0.17
Consensus pattern (12 bp):
AAAAAATAAAAT
Done.