Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 27 of 129
Found at i:3689907 original size:28 final size:27
Alignment explanation
Indices: 3689872--3689928 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 27
3689862 AACCTAATCT
3689872 AATAAATATAA-AAACAAATAAAATAAAA
1 AATAAATA-AAGAAACAAATAAAA-AAAA
*
3689900 AATAAATAAAGAAATAAATAAAAAAAA
1 AATAAATAAAGAAACAAATAAAAAAAA
3689927 AA
1 AA
3689929 CCTGAAGCGG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 8 0.30
28 19 0.70
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.16
Consensus pattern (27 bp):
AATAAATAAAGAAACAAATAAAAAAAA
Found at i:3690868 original size:46 final size:45
Alignment explanation
Indices: 3690795--3690882 Score: 110
Period size: 42 Copynumber: 1.9 Consensus size: 45
3690785 ATTATAGGAT
3690795 AAAAATAATAATAATAATATATAATTAAATAAGTATAAATAAATAAAAC
1 AAAAATAATAATAATAATATATAATT-AAT-A--ATAAATAAATAAAAC
*
3690844 AAAAATAAT-A-AAT-ATATATTATTAATAATAAATAAATAA
1 AAAAATAATAATAATAATATATAATTAATAATAAATAAATAA
3690883 TAAATACATA
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
42 12 0.32
44 1 0.03
45 3 0.08
46 9 0.24
47 3 0.08
48 1 0.03
49 9 0.24
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.31
Consensus pattern (45 bp):
AAAAATAATAATAATAATATATAATTAATAATAAATAAATAAAAC
Found at i:3690930 original size:12 final size:12
Alignment explanation
Indices: 3690901--3690929 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
3690891 TAGGATATAC
3690901 ATAAAATACAAA
1 ATAAAATACAAA
3690913 ATAAAATA-AAA
1 ATAAAATACAAA
3690924 ATAAAA
1 ATAAAA
3690930 AGAAATGACA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 9 0.53
12 8 0.47
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.17
Consensus pattern (12 bp):
ATAAAATACAAA
Found at i:3691202 original size:10 final size:10
Alignment explanation
Indices: 3691188--3691234 Score: 62
Period size: 10 Copynumber: 4.8 Consensus size: 10
3691178 ATAGAGGTAA
3691188 TTTTTTTT-C
1 TTTTTTTTGC
3691197 ATTTTTTTTGC
1 -TTTTTTTTGC
*
3691208 -TTTTTTTGT
1 TTTTTTTTGC
3691217 TTTTTTTTGC
1 TTTTTTTTGC
3691227 TTTTTTTT
1 TTTTTTTT
3691235 TTTAAATTGA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
9 8 0.24
10 24 0.73
11 1 0.03
ACGTcount: A:0.02, C:0.06, G:0.06, T:0.85
Consensus pattern (10 bp):
TTTTTTTTGC
Found at i:3691211 original size:9 final size:9
Alignment explanation
Indices: 3691199--3691233 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
3691189 TTTTTTTCAT
3691199 TTTTTTTGC
1 TTTTTTTGC
*
3691208 TTTTTTTGTT
1 TTTTTTTG-C
3691218 TTTTTTTGC
1 TTTTTTTGC
3691227 TTTTTTT
1 TTTTTTT
3691234 TTTTAAATTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.00, C:0.06, G:0.09, T:0.86
Consensus pattern (9 bp):
TTTTTTTGC
Found at i:3691213 original size:19 final size:19
Alignment explanation
Indices: 3691189--3691233 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
3691179 TAGAGGTAAT
3691189 TTTTTTTCATTTTTTTTGC
1 TTTTTTTCATTTTTTTTGC
**
3691208 TTTTTTTGTTTTTTTTTGC
1 TTTTTTTCATTTTTTTTGC
3691227 TTTTTTT
1 TTTTTTT
3691234 TTTTAAATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.02, C:0.07, G:0.07, T:0.84
Consensus pattern (19 bp):
TTTTTTTCATTTTTTTTGC
Found at i:3691388 original size:101 final size:100
Alignment explanation
Indices: 3691216--3691435 Score: 352
Period size: 101 Copynumber: 2.2 Consensus size: 100
3691206 GCTTTTTTTG
* *
3691216 TTTTTT-TTTGCTTTTTTTTTTTAAATTGATCAAAGCTCCTCTAAGCAGAGGTTCAATGACTTTG
1 TTTTTTGTTT-CTTTTTTTTTTTAAAATGATCAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTG
**
3691280 AGAAACATAAACAAAGCTCCTCTAAATAGAGGCATTT
65 AGAAACATAAACAAAGCTCCTCTAAATAGAGGCA-AC
*
3691317 TTTTTTGTTTTTTTTTTTTTTTAAAATGATCAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGA
1 TTTTTTGTTTCTTTTTTTTTTTAAAATGATCAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGA
**
3691382 GAAACATAAATGAAGCTCCTCTAAATAGAGGCAAC
66 GAAACATAAACAAAGCTCCTCTAAATAGAGGCAAC
3691417 TTTTTTGTTTCTTTTTTTT
1 TTTTTTGTTTCTTTTTTTT
3691436 CTATTTTTTT
Statistics
Matches: 110, Mismatches: 8, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
100 18 0.16
101 89 0.81
102 3 0.03
ACGTcount: A:0.29, C:0.15, G:0.14, T:0.43
Consensus pattern (100 bp):
TTTTTTGTTTCTTTTTTTTTTTAAAATGATCAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGA
GAAACATAAACAAAGCTCCTCTAAATAGAGGCAAC
Found at i:3691594 original size:42 final size:42
Alignment explanation
Indices: 3691461--3691774 Score: 474
Period size: 42 Copynumber: 7.5 Consensus size: 42
3691451 TTTTTTTAAA
* *
3691461 GCTCCTCTAAACAGAGGCTCGACGACTTTGG-AAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
*
3691502 GCTCCTCTAAACAGAGGCACCACGACTTT-AAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
* *
3691543 GCTCTTCTAAACAGAGGCACCATGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
*
3691585 GCTCCTCTAAACAAAGGCACCACGACTTTGG-AAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
*
3691626 GCTCCTCTAAACAGAGGCACCACAACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
* * *
3691668 GCACCTTTAAACAGAGGCACCACAACTTT-GAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGA-AAAGTAAATT
* **
3691710 GCTCCTCTAAATAGAGGCACCACGACTTTTAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
3691752 GCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCAC
3691775 AACGTTCCCC
Statistics
Matches: 249, Mismatches: 19, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
41 105 0.42
42 143 0.57
43 1 0.00
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.23
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
Found at i:3691604 original size:83 final size:83
Alignment explanation
Indices: 3691461--3691774 Score: 486
Period size: 83 Copynumber: 3.8 Consensus size: 83
3691451 TTTTTTTAAA
* *
3691461 GCTCCTCTAAACAGAGGCTCGACGACTTTGG-AAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
*
3691525 GACTTTAAAAAGTAAATT
66 GACTTTAGAAAGTAAATT
* * *
3691543 GCTCTTCTAAACAGAGGCACCATGACTTTGGAAAAGTAAATTGCTCCTCTAAACAAAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
*
3691608 GACTTTGGAAAGTAAATT
66 GACTTTAGAAAGTAAATT
* * *
3691626 GCTCCTCTAAACAGAGGCACCACAACTTTGGAAAAGTAAATTGCACCTTTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
*
3691691 AACTTTGAGAAAGTAAATT
66 GACTTT-AGAAAGTAAATT
* **
3691710 GCTCCTCTAAATAGAGGCACCACGACTTTTAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
3691775 AACGTTCCCC
Statistics
Matches: 209, Mismatches: 21, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
82 27 0.13
83 112 0.54
84 70 0.33
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.23
Consensus pattern (83 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
GACTTTAGAAAGTAAATT
Found at i:3691864 original size:28 final size:28
Alignment explanation
Indices: 3691824--3691877 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
3691814 GTAAATTGCT
3691824 CCTCTAAACAGAGGCACCACGACTTTCC
1 CCTCTAAACAGAGGCACCACGACTTTCC
* *
3691852 CCTCTAAATAGAGTCACCACGACTTT
1 CCTCTAAACAGAGGCACCACGACTTT
3691878 GGAAAGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.30, C:0.35, G:0.13, T:0.22
Consensus pattern (28 bp):
CCTCTAAACAGAGGCACCACGACTTTCC
Found at i:3691897 original size:41 final size:42
Alignment explanation
Indices: 3691852--3691936 Score: 145
Period size: 41 Copynumber: 2.0 Consensus size: 42
3691842 ACGACTTTCC
* *
3691852 CCTCTAAATAGAGTCACCACGAC-TTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
3691893 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
3691935 CC
1 CC
3691937 CTGACAATCA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
41 21 0.51
42 20 0.49
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.25
Consensus pattern (42 bp):
CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
Found at i:3691913 original size:69 final size:69
Alignment explanation
Indices: 3691713--3691918 Score: 349
Period size: 69 Copynumber: 3.0 Consensus size: 69
3691703 GTAAATTGCT
** *
3691713 CCTCTAAATAGAGGCACCACGACTTTTAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACAAC
1 CCTCTAAATAGAGGCACCACGAC-TTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
*
3691778 GTTCC
65 TTTCC
*
3691783 CCTCTAAATAGAGGCACCACAACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
1 CCTCTAAATAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
3691848 TTCC
66 TTCC
*
3691852 CCTCTAAATAGAGTCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
1 CCTCTAAATAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
3691917 TT
66 TT
3691919 TGGAAAGTAA
Statistics
Matches: 129, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
69 107 0.83
70 22 0.17
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.22
Consensus pattern (69 bp):
CCTCTAAATAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
TTCC
Found at i:3692242 original size:43 final size:42
Alignment explanation
Indices: 3692136--3692272 Score: 136
Period size: 43 Copynumber: 3.2 Consensus size: 42
3692126 TGAAAGATCC
** * *
3692136 TCATTTGAATTTTGGAGGCTCACATCCAAAAGTT-AAAGGTTCT
1 TCATTTGAATTTTGGA-ATTCACATCCAAAAATTCAAAGCTT-T
** *
3692179 T-ATTTGGCAAACTTGGAATTCATATCCAAAAA-TCTAAAGCTTT
1 TCATTT-G-AATTTTGGAATTCACATCCAAAAATTC-AAAGCTTT
3692222 TCATTTGAATTTTGGAAATTCACATCCAAAAATTCAAAGCTTT
1 TCATTTGAATTTTGG-AATTCACATCCAAAAATTCAAAGCTTT
3692265 TCATTTGA
1 TCATTTGA
3692273 GTTCAAAGGC
Statistics
Matches: 77, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
42 11 0.14
43 47 0.61
44 19 0.25
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.36
Consensus pattern (42 bp):
TCATTTGAATTTTGGAATTCACATCCAAAAATTCAAAGCTTT
Found at i:3692504 original size:22 final size:22
Alignment explanation
Indices: 3692456--3692514 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
3692446 GGTTTCACTC
3692456 CTCAAAGATTCTCATTTTGAAAT
1 CTCAAAGATTCTCA-TTTGAAAT
**
3692479 -TCAAAGATTCTCATTTGAGTT
1 CTCAAAGATTCTCATTTGAAAT
*
3692500 CTCAAAAATTCTCAT
1 CTCAAAGATTCTCAT
3692515 CAAAACATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.19
22 26 0.81
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.39
Consensus pattern (22 bp):
CTCAAAGATTCTCATTTGAAAT
Found at i:3692828 original size:59 final size:58
Alignment explanation
Indices: 3692764--3693086 Score: 346
Period size: 59 Copynumber: 5.3 Consensus size: 58
3692754 ACTGCACCAT
3692764 TTTTTTGGAAATTTTGATTTTCAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATA
1 TTTTTTGGAAATTTT-ATTTTCAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATA
* *
3692823 TTTTTTGGAAA-TTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATA
1 TTTTTTGGAAATTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATA
* *
3692880 TTTTTTTTGAAAATTTA-TTTCAAAGGAAAATTGATACTTTCAACTTTT-CCTCAAAAATCCCTT
1 -TTTTTTGGAAATTTTATTTTC-AAGGAAAATTGATACTTTCAACTTTTCCCT-AAAAA------
*
3692943 TTTT
57 --TA
* * * *
3692947 TTTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCTAAAAATA
1 TTTTTTGGAAATTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATA
*** * *
3693005 TTTTTCAAAAATTTTGATTTTCAAGGAAGATTGATACTTTCAACTTTTCCCCAAAAATA
1 TTTTTTGGAAATTTT-ATTTTCAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATA
*
3693064 GTTTTTTTGGAACTTTTGATTTT
1 --TTTTTTGGAAATTTT-ATTTT
3693087 TATTTAAAGA
Statistics
Matches: 226, Mismatches: 21, Indels: 32
0.81 0.08 0.11
Matches are distributed among these distances:
57 41 0.18
58 30 0.13
59 85 0.38
61 17 0.08
66 46 0.20
67 7 0.03
ACGTcount: A:0.33, C:0.12, G:0.09, T:0.46
Consensus pattern (58 bp):
TTTTTTGGAAATTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATA
Found at i:3692962 original size:66 final size:66
Alignment explanation
Indices: 3692880--3693003 Score: 205
Period size: 66 Copynumber: 1.9 Consensus size: 66
3692870 CCCAAAAATA
*
3692880 TTTTTTTTGAAAATTTATTTCAAAGGAAAATTGATACTTTCAACTTTT-CCTCAAAAATCCCTTT
1 TTTTTTTTGAAAATTTATTTCAAAGGAAAATGGATACTTTCAACTTTTCCCT-AAAAATCCCTTT
3692944 TT
65 TT
**
3692946 TTTTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCTAAAAAT
1 TTTTTTTTGAAAATTTATTTCAAAGGAAAATGGATACTTTCAACTTTTCCCTAAAAAT
3693004 ATTTTTCAAA
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
66 51 0.94
67 3 0.06
ACGTcount: A:0.33, C:0.13, G:0.07, T:0.47
Consensus pattern (66 bp):
TTTTTTTTGAAAATTTATTTCAAAGGAAAATGGATACTTTCAACTTTTCCCTAAAAATCCCTTTT
T
Found at i:3692969 original size:125 final size:125
Alignment explanation
Indices: 3692823--3693062 Score: 369
Period size: 125 Copynumber: 1.9 Consensus size: 125
3692813 CCTAAAAATA
* * *
3692823 TTTTTTGGAAATTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
1 TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATA--TTTTTC
* *
3692888 GAAAA-TTT-A-TTTCAAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTT
64 AAAAATTTTGATTTTC-AAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATCCCTTTTTTT
*
3692948 TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCTAAAAATATTTTTCAA
1 TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATATTTTTCAA
*
3693013 AAATTTTGATTTTCAAGGAAGATTGATACTTTCAACTTTTCCCCAAAAAT
66 AAATTTTGATTTTCAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAAT
3693063 AGTTTTTTTG
Statistics
Matches: 105, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
123 9 0.09
124 3 0.03
125 89 0.85
126 4 0.04
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (125 bp):
TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATATTTTTCAA
AAATTTTGATTTTCAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATCCCTTTTTTT
Found at i:3693128 original size:16 final size:16
Alignment explanation
Indices: 3693109--3693169 Score: 63
Period size: 16 Copynumber: 3.8 Consensus size: 16
3693099 ATAGAATAAT
3693109 AAAAAAAATAAAAGTG
1 AAAAAAAATAAAAGTG
* *
3693125 AAAATAAATAAAAAT-
1 AAAAAAAATAAAAGTG
*
3693140 AAAAATAAAGAAAAG-G
1 AAAAA-AAATAAAAGTG
3693156 AAAACAAAATAAAA
1 AAAA-AAAATAAAA
3693170 AATAAGTAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
15 4 0.11
16 31 0.86
17 1 0.03
ACGTcount: A:0.79, C:0.02, G:0.08, T:0.11
Consensus pattern (16 bp):
AAAAAAAATAAAAGTG
Found at i:3693166 original size:32 final size:31
Alignment explanation
Indices: 3693096--3693170 Score: 89
Period size: 32 Copynumber: 2.3 Consensus size: 31
3693086 TTATTTAAAG
*
3693096 AAAATAGAATAATAAAAAAAATAAAAGTGAAAA
1 AAAATA-AA-AATAAAAAAAAGAAAAGTGAAAA
*
3693129 TAAATAAAAATAAAAATAAAGAAAAG-GAAAA
1 AAAATAAAAATAAAAA-AAAGAAAAGTGAAAA
3693160 CAAAATAAAAA
1 -AAAATAAAAA
3693171 ATAAGTAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
31 13 0.35
32 19 0.51
33 5 0.14
ACGTcount: A:0.77, C:0.01, G:0.08, T:0.13
Consensus pattern (31 bp):
AAAATAAAAATAAAAAAAAGAAAAGTGAAAA
Found at i:3693186 original size:27 final size:27
Alignment explanation
Indices: 3693111--3693187 Score: 79
Period size: 26 Copynumber: 2.9 Consensus size: 27
3693101 AGAATAATAA
*
3693111 AAAAAATAAAAGTGAAAATAAATAAAAAT
1 AAAAAAT-AAAGT-AAAATAAAAAAAAAT
* *
3693140 -AAAAATAAAG-AAAAGGAAAACAAAAT
1 AAAAAATAAAGTAAAA-TAAAAAAAAAT
3693166 AAAAAAT-AAGTAAAATAAAAAA
1 AAAAAATAAAGTAAAATAAAAAA
3693188 TATTAAATAA
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
25 4 0.10
26 16 0.40
27 14 0.35
28 6 0.15
ACGTcount: A:0.78, C:0.01, G:0.08, T:0.13
Consensus pattern (27 bp):
AAAAAATAAAGTAAAATAAAAAAAAAT
Found at i:3694136 original size:23 final size:23
Alignment explanation
Indices: 3694110--3694275 Score: 81
Period size: 23 Copynumber: 7.4 Consensus size: 23
3694100 AAAAAAAGAT
3694110 AATAAAA-AATATTATAGAATAA-A
1 AATAAAATAATA-TATA-AATAATA
*
3694133 AATAAAATAATATATAATTAATA
1 AATAAAATAATATATAAATAATA
* *
3694156 AATAAAATACAAAAATAAAT-A-A
1 AATAAAATA-ATATATAAATAATA
3694178 AATAAAA-AATA-A-AAATAA-A
1 AATAAAATAATATATAAATAATA
* * *
3694197 AA-AATATATATATATTATTAAT-
1 AATAAAATA-ATATATAAATAATA
* *
3694219 AATATAAATAATAAATACATAGGATA
1 AATA-AAATAATATATAAATA--ATA
3694245 TACAT-AAA-AATATA-AAATAA-A
1 -A-ATAAAATAATATATAAATAATA
3694266 AATAAAATAA
1 AATAAAATAA
3694276 AAATGACAAA
Statistics
Matches: 110, Mismatches: 15, Indels: 38
0.67 0.09 0.23
Matches are distributed among these distances:
18 7 0.06
19 8 0.07
20 9 0.08
21 5 0.05
22 19 0.17
23 30 0.27
24 19 0.17
25 7 0.06
26 3 0.03
27 1 0.01
28 2 0.02
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (23 bp):
AATAAAATAATATATAAATAATA
Found at i:3694141 original size:28 final size:26
Alignment explanation
Indices: 3694110--3694278 Score: 84
Period size: 28 Copynumber: 6.3 Consensus size: 26
3694100 AAAAAAAGAT
3694110 AATAAAAAATATTATAGAATAAAAATAA
1 AATAAAAAATA-TATA-AATAAAAATAA
*
3694138 AAT----AATATATAATTAATAAATAA
1 AATAAAAAATATATAAATAA-AAATAA
*
3694161 AATACAAAAATAAATAAAATAAAAAATAAA
1 AATA-AAAAATATAT-AAAT-AAAAAT-AA
* ** *
3694191 AATAAAAAAATATATATATATTATTAA
1 AAT-AAAAAATATATAAATAAAAATAA
* *
3694218 TAAT-ATAAATA-ATAAATACATAGGATATA
1 -AATAAAAAATATATAAATA-A-A-AATA-A
*
3694247 CAT-AAAAATATA-AAATAAAAATAA
1 AATAAAAAATATATAAATAAAAATAA
3694271 AATAAAAA
1 AATAAAAA
3694279 TGACAAAGAT
Statistics
Matches: 106, Mismatches: 18, Indels: 37
0.66 0.11 0.23
Matches are distributed among these distances:
22 4 0.04
23 13 0.12
24 7 0.07
25 13 0.12
26 7 0.07
27 3 0.03
28 30 0.28
29 12 0.11
30 16 0.15
31 1 0.01
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.27
Consensus pattern (26 bp):
AATAAAAAATATATAAATAAAAATAA
Found at i:3694152 original size:29 final size:27
Alignment explanation
Indices: 3694120--3694206 Score: 77
Period size: 30 Copynumber: 3.0 Consensus size: 27
3694110 AATAAAAAAT
3694120 ATTATAGAATAAAAATAAAATAATATATA
1 ATTATA-AATAAAAATAAAA-AATATATA
*
3694149 ATTAATAAAT-AAAATACAAAAATAAATAAA
1 ATT-ATAAATAAAAATA-AAAAAT--ATATA
* *
3694179 ATAAAAAATAAAAATAAAAAAATATATA
1 ATTATAAATAAAAAT-AAAAAATATATA
3694207 TATATTATTA
Statistics
Matches: 48, Mismatches: 4, Indels: 13
0.74 0.06 0.20
Matches are distributed among these distances:
28 13 0.27
29 14 0.29
30 20 0.42
31 1 0.02
ACGTcount: A:0.72, C:0.01, G:0.01, T:0.25
Consensus pattern (27 bp):
ATTATAAATAAAAATAAAAAATATATA
Found at i:3694174 original size:17 final size:16
Alignment explanation
Indices: 3694110--3694202 Score: 75
Period size: 16 Copynumber: 5.7 Consensus size: 16
3694100 AAAAAAAGAT
* *
3694110 AATAAAAAATATTATAG
1 AATAAAAAATA-AATAA
3694127 AAT-AAAAATAAAATAA
1 AATAAAAAAT-AAATAA
**
3694143 TATATAATTAATAAATAA
1 -A-ATAAAAAATAAATAA
3694161 AATACAAAAATAAATAA
1 AATA-AAAAATAAATAA
3694178 AATAAAAAATAAA-AA
1 AATAAAAAATAAATAA
*
3694193 TA-AAAAAATA
1 AATAAAAAATA
3694203 TATATATATT
Statistics
Matches: 64, Mismatches: 7, Indels: 13
0.76 0.08 0.15
Matches are distributed among these distances:
14 8 0.12
15 3 0.05
16 21 0.33
17 20 0.31
18 8 0.12
19 4 0.06
ACGTcount: A:0.74, C:0.01, G:0.01, T:0.24
Consensus pattern (16 bp):
AATAAAAAATAAATAA
Found at i:3694183 original size:22 final size:21
Alignment explanation
Indices: 3694155--3694202 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 21
3694145 TATAATTAAT
*
3694155 AAATAAAATACAAAAATAAATA
1 AAATAAAAAACAAAAATAAA-A
*
3694177 AAATAAAAAATAAAAATAAAA
1 AAATAAAAAACAAAAATAAAA
3694198 AAATA
1 AAATA
3694203 TATATATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 6 0.25
22 18 0.75
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.17
Consensus pattern (21 bp):
AAATAAAAAACAAAAATAAAA
Found at i:3694200 original size:30 final size:29
Alignment explanation
Indices: 3694127--3694202 Score: 91
Period size: 28 Copynumber: 2.6 Consensus size: 29
3694117 AATATTATAG
* * * *
3694127 AATAAAAATAAAATAATATATAATTAATA
1 AATAAAAATAAAAAAATAAATAAATAAAA
*
3694156 AAT-AAAATACAAAAATAAATAAAATAAAA
1 AATAAAAATAAAAAAATAAAT-AAATAAAA
3694185 AATAAAAATAAAAAAATA
1 AATAAAAATAAAAAAATA
3694203 TATATATATT
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
28 14 0.36
29 12 0.31
30 13 0.33
ACGTcount: A:0.76, C:0.01, G:0.00, T:0.22
Consensus pattern (29 bp):
AATAAAAATAAAAAAATAAATAAATAAAA
Found at i:3694657 original size:26 final size:26
Alignment explanation
Indices: 3694621--3694673 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3694611 GTTGACTTAG
3694621 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
3694647 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3694673 G
1 G
3694674 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3697127 original size:26 final size:26
Alignment explanation
Indices: 3697098--3697151 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
3697088 TGGGTTGACT
3697098 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
*
3697124 TAGGCATATGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
3697150 TA
1 TA
3697152 AGATCGGATC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:3698915 original size:26 final size:26
Alignment explanation
Indices: 3698879--3698931 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3698869 GTTGACTTAG
*
3698879 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
3698905 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3698931 G
1 G
3698932 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3701527 original size:720 final size:714
Alignment explanation
Indices: 3699755--3701786 Score: 2888
Period size: 720 Copynumber: 2.8 Consensus size: 714
3699745 AGCACATAAT
* * *
3699755 GGGCTCGGGCATGTGCTGGTGCCGTAATTTTCTTCGTCGGGGCACCTTCACCGGAGCATCGCCGG
1 GGGCTCGAGCATGTGCTGGTGCCGTAATTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGG
* *
3699820 AGAACCTGACCGGCGGCATTGGGGTTTCGATGATCGGGGGGGCCAGGGGGTGTGCACACATGATG
66 AGAACCTGACCGGCGGCATTGGGGTTCCGATGATC-GGGGGGCCGGGGGGTGTGCACACATGATG
**** * *
3699885 TGCGATGGGTGCTGGTACTTCATTCTTATATTGGCCCCCTAT-TCCCCATCAACCCTCGAGAACT
130 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCT-CTCATCAAACCTCGAGAACT
* *
3699949 CACACCCCCTTATAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CATTAAAGTGTCTAA
193 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
3700013 AATGGAGAAAC-TTTTTC-AATGATCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTT
258 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT-TT
3700076 TTGTACATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
322 TTGTACATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
* *
3700141 AAAATTTTAAAAAAT-CTCGAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG
386 AAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG
*
3700205 TCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
450 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * * * *
3700270 GGCATTGGCATGCAAAAATTTGAAGATGTGCCAAAAACCCACCTACCACCCTATCGATCCACGGC
515 GGCATTGGCACACAGAAATATGAAGATGTGCC-TAAACCCACCTACCACCCTATCGATCCACGAC
* * * *** **
3700335 TTC-CGCATCCCGTCTCTCTGCCCGGTGTAGTGTTTGCCCGCTAGCCCGCCCGCTTATTTTGTCA
579 -TCGCGCATCCCGTCTCTCTGGCCGGTATAATGCCCGCCCGCTAGCCCGCCCGCTTATTTAATCA
* * * * *
3700399 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGGCTGAGGGTTGGGGCAGC
643 GTTGGCTTAGGCATACGGACTTCATTCCCAGTCTAAGACCAGATCAGGCCGAGGGTTGCGGCAGC
*
3700464 ACATGCT
708 ACATGCA
* ** * * *
3700471 GGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCAGAGCATTGCTGG
1 GGGCTCGAGCATGTGCTGGTGCCGTAATTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGG
* * * ** *
3700536 AGAACTTGACCGACGACATTGGGGTTCCGGCGATC----GG--GGTGGGTGTGCACACATGATGT
66 AGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCACACATGATGT
* * * *
3700595 GCGATGGGTGCTGGTAGTTGGCCCTTATGTTGGGCCCCTATCCCTAATCAAACCTCGAGAACTCA
131 GCGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCTATCTCTCATCAAACCTCGAGAACTCA
3700660 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
195 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
3700725 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTT
260 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TTTTTT
* * * * *
3700790 GTGCATGCCAAAAAAATACAAGGATCAGGTCTACCACGTTTGGGGCCAAAAATCTTTTCGAAAAA
324 GTACATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* *
3700855 ATTTGAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
389 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
3700920 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAA
454 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
3700985 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCCACGACTCGCG
519 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTCGCG
* * * * * *
3701050 CATCCCATCTCTCTGGCTGTTATAATGCCCACCCGTCCGCCT-GCCCGTCCGCTTATTTAATCGG
584 CATCCCGTCTCTCTGGCCGGTATAATG----CCCGCCCG-CTAGCCCGCCCGCTTATTTAATCAG
* * *
3701114 TTGGCTTGGGCATACGGACTTCATTCCTAGTCTATGACCAGA-CAGGACCGAGGG-TGCGGCAGC
644 TTGGCTTAGGCATACGGACTTCATTCCCAGTCTAAGACCAGATCAGG-CCGAGGGTTGCGGCAGC
3701177 ACATGCA
708 ACATGCA
** * ** * *
3701184 GGGCTCGCTCATGTACTGGTGCCACAATTTTCTTCGTCAGGGCACCATCGTCGGAGCATCGCCGG
1 GGGCTCGAGCATGTGCTGGTGCCGTAATTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGG
* **
3701249 AGAACCTGACTGGCGGCATTGGGGTTCCGATGATCGTGGGGGCCGGGGGGTGTGTGCACATGATG
66 AGAACCTGACCGGCGGCATTGGGGTTCCGATGATCG-GGGGGCCGGGGGGTGTGCACACATGATG
3701314 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCTCTCATCAAACCTCGAGAACTC
130 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCTCTCATCAAACCTCGAGAACTC
* * *
3701379 ACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATTTGAA
194 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
3701444 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAACTGAATTTTTT
259 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
* * *
3701509 GTACATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAA
324 GTACATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* *
3701574 AGTTTTAAAAAATCCTGAATCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
388 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
3701639 TGCCATGAAACTTCACGTGAAGGCTTAAGGGCCCATTGTATGAATTTACAAGCCATAAAAATGGC
453 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
3701704 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGACTTGC
518 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTCGC
*
3701769 GCATCCCGTCGCTCTGGC
583 GCATCCCGTCTCTCTGGC
3701787 GGACGTAATG
Statistics
Matches: 1165, Mismatches: 128, Indels: 42
0.87 0.10 0.03
Matches are distributed among these distances:
709 119 0.10
710 77 0.07
711 203 0.17
712 54 0.05
713 101 0.09
714 64 0.05
715 2 0.00
716 85 0.07
718 2 0.00
719 20 0.02
720 438 0.38
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (714 bp):
GGGCTCGAGCATGTGCTGGTGCCGTAATTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGG
AGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCACACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCTCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTGT
ACATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAT
TTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTCGCGCA
TCCCGTCTCTCTGGCCGGTATAATGCCCGCCCGCTAGCCCGCCCGCTTATTTAATCAGTTGGCTT
AGGCATACGGACTTCATTCCCAGTCTAAGACCAGATCAGGCCGAGGGTTGCGGCAGCACATGCA
Found at i:3704670 original size:25 final size:26
Alignment explanation
Indices: 3704633--3704684 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
3704623 GTTGACTTAG
3704633 GCATAGAGAGTTCATTCCCAGTCTAA
1 GCATAGAGAGTTCATTCCCAGTCTAA
* *
3704659 GCATAG-GAGTTCATTCTCGGTCTAA
1 GCATAGAGAGTTCATTCCCAGTCTAA
3704684 G
1 G
3704685 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
GCATAGAGAGTTCATTCCCAGTCTAA
Found at i:3705566 original size:26 final size:26
Alignment explanation
Indices: 3705536--3705588 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3705526 GTTGACTTAG
3705536 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
3705562 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3705588 G
1 G
3705589 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3707363 original size:26 final size:26
Alignment explanation
Indices: 3707327--3707379 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3707317 GTTGACTTAG
*
3707327 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3707353 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3707379 G
1 G
3707380 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3709089 original size:26 final size:26
Alignment explanation
Indices: 3709059--3709111 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3709049 GTTGACTTAG
*
3709059 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3709085 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3709111 G
1 G
3709112 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3710510 original size:903 final size:900
Alignment explanation
Indices: 3708181--3710642 Score: 3428
Period size: 892 Copynumber: 2.7 Consensus size: 900
3708171 GTTGACTTAG
* *
3708181 GCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * * * *
3708246 CTCGGGCATTTGCTAGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTTGGAGCATTGCCAGAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAG-ATCG-CGGAGA
* * * * * * *
3708311 ACCTGACTGGCAGCATTGGGGTTCCGGA-GATCGGGGGGGTCAGGGGGTTGTCCGCACATGATGT
129 ACCTAACCGACGGCATTGGGGTTCC-GACGATC-GGGGGGACAGGGGGGTGTGCGCACATGATGT
* * *
3708375 GCGATGGGTGCTGGGAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAACCCTCAAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCA
* *
3708440 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTACTAGCCATTAAAGTGTCTA-AA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-AGAA
* ** * *
3708504 ATAGGGACACTTTTTTCAAATGGTCACAAAATCTTAAACACTTCGAGTTTTTAGTTGAATTTGTT
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
3708569 TGTGCATACCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
385 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
*
3708634 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
450 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
3708699 TTGCCATGAAACTTCACGGGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGG
* * *
3708764 CATTGGCA-AGCAGAAATATAAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACAGCTT
580 CATTGGCACA-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * * *
3708828 GCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGTCTGCCCGCTTGTTTCGTCGGTT
644 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCATCGGTT
* * * * *
3708893 GGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTGTGGCAACAGG
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCGGCAACAGG
* ** *
3708958 ATCGACAGCACGTAGAGAGGGACCTGACCGATACCCGGCTTGCGCATCCCACCCCTCTGGCCGGC
774 ATCGACAGCACGCAGAGAGGGACCCAACCAATACCCGGCTTGCGCATCCCACCCCTCTGGCCGGC
* * * * * *
3709023 TGAGCGCCCGCGCTCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
839 TAAGCGCCCACACACTCATTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
3709085 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCA-GTCTGAGGGTTACGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGGACCGAGGGTTGCGACAGCACATGCTGG
** * * *
3709149 TTTCGAGCATGTGCTGGTGCCACATTTTTCTTTGTCGAGGCACCA---TC----A-C-CGGCGAA
65 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGATCGCGGAGAA
* *
3709205 CCTAACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCG
130 CCTAACCGACGGCATTGGGGTTCCGACGATCGGGGGGACAGGGGGGTGTGCGCACATGATGTGCG
* * *
3709270 ATGGGTGCCGGTGCATGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCAAGAACTCACAC
* *
3709335 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCAGAAATGG
3709400 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * * *
3709465 CAAGCGAAAAAAAATACAAGGATCACGACTACCATGTTTGGGGCCAAAAATCCTTCCAAAAAAAT
389 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * *
3709530 TTTAAAAAATCTCAAACCGCAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGC
454 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
3709595 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCACAAAAATGGCACT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATT
* ** * *
3709660 GACACTTAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCCCGGCTTGCGCA
584 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
*
3709725 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CACGCTCGCTCGTTTCATCGGTTGGCT
649 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTC-CGCCCGCTCGTTTCATCGGTTGGCT
* * * *
3709789 TAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGA-TCAGACCAAGGGTTGCGGTAGCAGGATC
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACCAAGGGTTGCGGCAACAGGATC
* * * *** *
3709853 GGCAGCACGCAGAGGGGGACCCAACCAAT-CCCTGGCTTGCTCATCTTTCCCCTCTGGTCGGCTA
777 GACAGCACGCAGAGAGGGACCCAACCAATACCC-GGCTTGCGCATCCCACCCCTCTGGCCGGCTA
* * *
3709917 AGCGCCCACACACTCGTTTCGTGGGTTCACTTAGGCTTACGGAGTTCATTCCCAGTCTAA
841 AGCGCCCACACACTCATTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
3709977 GCATACAGAGTTCATTCCCAGTCTAAGATTGGATAGGACCGAGGGTTGCGACAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTGCGACAGCACATGCTGGG
*
3710042 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGTATCGTTGGAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAG-ATCG-CGGAGA
* * * * *
3710107 ACCTAACCGACGGCATTGGGGTTCCAACGATCGGGGGGACGGGGGGGTGTGCACGCATGATGTGT
129 ACCTAACCGACGGCATTGGGGTTCCGACGATCGGGGGGACAGGGGGGTGTGCGCACATGATGTGC
* * *
3710172 GTTGGGTGCTGGTACTTGGCCCTTACATTGGCCCCTATCCCTCATCAAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATC-AAACCTCAAGAACTCACA
* * *
3710237 CCACCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCACTAAAGTGTCAGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCAGAAATG
* *
3710302 GGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
3710367 GCATGCCAAAAAAAATACAAGGATTACCTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAA
388 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
3710432 TTTTCAAAAATCTCGAACCGTAAAAAGTTTCCAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
453 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
3710497 CCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATC-AAAATGGCA
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-CAAAAATGGCA
* *
3710561 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCATGGCTTGCG
582 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
3710626 CATCCCCTCTCTATGGC
647 CATCCCGTCTCTCTGGC
3710643 TTGCGTAGTG
Statistics
Matches: 1367, Mismatches: 169, Indels: 45
0.86 0.11 0.03
Matches are distributed among these distances:
891 10 0.01
892 739 0.54
893 29 0.02
895 2 0.00
896 1 0.00
900 1 0.00
901 2 0.00
902 11 0.01
903 479 0.35
904 92 0.07
905 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGATCGCGGAGAAC
CTAACCGACGGCATTGGGGTTCCGACGATCGGGGGGACAGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCAGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGG
CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCGGCAACAGGATCGACA
GCACGCAGAGAGGGACCCAACCAATACCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTAAGCGC
CCACACACTCATTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:3711689 original size:26 final size:26
Alignment explanation
Indices: 3711653--3711705 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3711643 GTTGACCTAG
3711653 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3711679 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3711705 G
1 G
3711706 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3712585 original size:26 final size:26
Alignment explanation
Indices: 3712555--3712659 Score: 183
Period size: 26 Copynumber: 4.0 Consensus size: 26
3712545 GTTGACTTAG
*
3712555 GCATACGGAGTTCATTCCCAGTCTCA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3712581 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3712607 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3712633 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3712659 G
1 G
3712660 ATCGGACCAG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3713538 original size:26 final size:26
Alignment explanation
Indices: 3713508--3713560 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3713498 GTTGACTTAG
*
3713508 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3713534 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3713560 G
1 G
3713561 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3714431 original size:26 final size:26
Alignment explanation
Indices: 3714401--3714453 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3714391 GTTGACTTGG
3714401 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3714427 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3714453 G
1 G
3714454 ATCGAACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3715326 original size:895 final size:894
Alignment explanation
Indices: 3710749--3716954 Score: 7079
Period size: 893 Copynumber: 6.9 Consensus size: 894
3710739 TACAGTCTAA
* * * ** * * *
3710749 GCATACGTAGTTCATTCCCAATCTTAGCATACAAAGTTCATTCCTAGTCAAAGATCAGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * **
3710814 CGAAGGTTGCGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* ** * ** * *
3710879 CACCATTACCAAAGCATCGTCGAAGAACCTGACCGACGGCTTTGGCGTTCCGACGATCGGAGGGG
131 CACCATCACCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGG-GGGG
* * *
3710944 CCGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGGCCCCTA
195 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
3711009 TCCCTGATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
260 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGTTG
* *
3711074 CCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
325 CCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
3711139 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTGTACCAAGT
390 TTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGT
*** * * *
3711204 TTCCAGCCAAAACTCCTTCAGAAAAAATGTTAAAAAATGCCGAATCGTAAAAAGTTTCAAAAATC
454 TTGGGGCCAAAACTCCTTC-G-AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * * *
3711269 ATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAAACTTCGCGTGAAGGCTTAAAGGACCATTGT
517 GTGAAAAATAGAAAACGAGTCGTCTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * *
3711334 ATGAATTCACAATCCATAAAAATGGCATTGGCGTGCAAAAATATGAAGATGTGCCTAAACCCACC
581 ATGAATTTACAAGCCATAAAAATGGCATTGGCAT--AGAAATATGAAGATGTGCCTAAACCCACC
* * *
3711399 TACCACCCGATCTATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCG
644 TACCACCC-ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCGCCC
* * * *
3711464 ACCCGCCCGCTCGTTTCGTCGATTGGCATAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGAT
704 ACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * ** * * **
3711529 CGGATC-GAGGGTTGCGGCAATAGGATCGACAGCACACAGAGGGGGACTTGGTCGAT-CCCGGCT
769 CAGACCAGAGGGTTACGGTAGTAGGATCGGTAGCACGCAGAGGAGGACCCGGTCGATCCCCGGCT
* * * * ** * * * *
3711592 TGCGCATTCTGCCTCTCTGGCCGGCTAAGCGTCCACACGCTCGTTTTATGGGTTGACCTAG
834 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAG
* *
3711653 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * * * * *
3711718 CGAAGGTTACGGCAGCACATGCTAGGCTCAGGCATGTGTTGGTGCCGCATTTTTCTTCGCCAGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
** * * *** * *
3711783 CACCATTGCCGAAGCATCGTCAGAGAACCTGACCAACGGCATTGAGGTTCCGACAATCGGAGGGG
131 CACCATCACCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGG-GGGG
* * * * * * *
3711848 CCGGGATGGGTGTGCGCACGTGATGTGCGATGGGTGATGGTACTTGGCCCATATATTGGGCTCGT
195 CCGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
** *
3711913 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCT
259 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGTT
* * * * *
3711978 GCTAATAGCCATTAAAGTGTCTGAAATGGAGACATTTTTTTCAAATGGTCACAAAATCTTGTACA
324 GCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
**
3712043 CTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAA
389 CTTCGAGTTTTTAGCTGAA--TTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAA
** * * * ** **
3712108 GTTTGCAGCCAAAACTCCTTCTAAAAAAATTTGAAAAAATGCCGAATTGTAAATGGTTTCAAAAA
452 GTTTGGGGCCAAAACTCCTTC--GAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* *
3712173 TTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTG
515 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
3712238 TATGAATTTACAATCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCAAC
580 TATGAATTTACAAGCCATAAAAATGGCATTGGCA--TAGAAATATGAAGATGTGCCTAAACCCAC
* * * * **
3712303 CTACCACCCTATCGATCCACGGCTTGAGCATCCCGTCTCTCTGGTCGGGGTAGTGCCTGCCTGCC
643 CTACCACCC-ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACC
** * * *
3712368 CGCCCATTCGTTTCGTCAGTTGGCTTAGGCCTACGGAGTTTATTCCCAGTCTAAGATCAGACCAG
707 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
** ** * * *
3712433 ACC-GAGGGTTACGACAACAGGATCGGCAGCACGTAGA-GAGGGACCTGGTCGATCCCCGGCTTG
772 ACCAGAGGGTTACGGTAGTAGGATCGGTAGCACGCAGAGGA-GGACCCGGTCGATCCCCGGCTTG
* ** ** * **
3712496 CGCATTCTACCCCTCTGGCCGGCTGAGTGCCCACACGCTCGCTTCATGGGTTGACTTAG
836 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAG
* *
3712555 GCATACGGAGTTCATTCCCAGTCTCAGCATACGGAGTTCATTCTCAGTCTAAGCATACGGAGTTC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---
** * * * *
3712620 ATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCA-GACCGAGGGTTGCAG
59 A---CCAG----A-CCGA-GG-G----TT-GC-GGC--AG--C--A-CATG--C-TGGGCT-C-G
* ** * * * **** * *
3712684 TAGCACATGCTGG-GCTCGGGCA-TGTGC-TGGT-GCCATATTTCTCTTCACCGGGGCACCATCG
96 -GGCATGTGCTGGTGC-C--GCATTTTTCTTCGTCGGGGCA---C-CATCACC--GG-AGCATCG
* * * **
3712745 TCGGAGCATCGTCCGAGAACCCGACCGGTGGCATTGGGGTTCCAACGATCGGGGGGGCTAGGGGG
150 T--------CG---GAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGG
* * * *
3712810 TGTGCGCACATGATGTGCGATGAGTGCTGGTACTTGGCCCTAATATTGGCCCCCTATCCCTTATT
204 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * * **
3712875 AAACCTCAAGAACTCACACCCCCTTAAAGAGAATGTGAGATTTTACAGGTTT-TCTATCAGTAGC
269 AAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGT-TGCCAGTAGC
* * * *
3712939 CATTAAAGTGTTTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCAAATT
333 CATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * ** * *
3713004 TTTAGCTGATTTTTTTGTGCATTCCAATAAAAATACAAGGATCATTTCCACCAAGTTTGGGGTCA
398 TTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCA
*
3713069 AAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTCAAAAAT
463 AAACTCCTTC-G-AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
*
3713134 AGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
526 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * *
3713199 AAGCCATAAAAATGGCATTAGCACACAGAAATGTGAATATGTGCCTAAACCCACCTACCACCCTA
591 AAGCCATAAAAATGGCATT-G-GCATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC-A
* ** *
3713264 TCGATACACGGCTTGCGCATCCCGTCTCTCTGGCTAGCGTAGTGCCCGCCCACCCGTCCGCCGTT
653 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCG--C-CCGCT
* ** * *
3713329 CGTTTTGTCAATTGGCTTAGGCAGACGGAGTTGATTCCCAGTCTAAGATCAGACC-GAACCA-AG
715 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCAGAG
* * * * * *
3713392 GCTTACGGTAGTAGGATCGGTAGGACGCAGAAGAGGACCCGATCGATCCCCGGCTTACTCATCCC
779 GGTTACGGTAGTAGGATCGGTAGCACGCAGAGGAGGACCCGGTCGATCCCCGGCTTGCGCATCCC
* * *
3713457 GCCCTTTTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAG
844 GCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAG
* ** *
3713508 GCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * *
3713573 CGAGGATTGTGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * *
3713638 CACCACCACCGGAGCATCGTCGGAGAACCTGATCGGTGGCATTGGTGTTCCGACGATCGGGGGGC
131 CACCATCACCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGC
* * **
3713703 CAGGGGGGCTGTGCGCACATGTTGTGCGATGGGTGCTGGTACTTCACCCTTATATTGGCCCCCTA
196 C-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
3713768 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTG
260 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGTTG
*
3713833 CCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTTCAAATGGTCACAAAATCTTATACA
325 CCAGTAGCCATTAAAGTGTTTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACA
3713898 CTTCGAGTTTTTAGCTGAATTTTTTGTGCATG-CAACAAAAATACAAGGATCACATCTACCAAGT
389 CTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGT
* * *
3713962 TTGGGGCCAAAACTGCTTTCCGAAAAATTTAAAAAAAT-CCGAACAGTAAAAAAGTTTCAAAAAT
454 TTGGGGCCAAAACT-CCTT-CGAAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAAT
* * *
3714026 TGTG-AAAATAG-AAACGAGTCGTCATGCCATGAAACTTCACGTGAAGGCTTAAGGGACCTTTGT
516 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
** *
3714089 ATGAATTTACAAGCCATAAAAATGGCATTGGTACGCAGAAATATGAAGATGTGCCTAAACGCACC
581 ATGAATTTACAAGCCATAAAAATGGCATTGG--CATAGAAATATGAAGATGTGCCTAAACCCACC
* * *
3714154 TATCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCA---
644 TACCACCC-ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCC
* * *
3714216 -CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTAATTCCCAGTCTAAGATCAGACCGGA
708 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * * *
3714280 -CTGAGGGTTGCGGTAGTAGGATCGGTAGCACGCAGAGAAGGACCCAGTCGATCCCTGGCTTGCG
773 CCAGAGGGTTACGGTAGTAGGATCGGTAGCACGCAGAGGAGGACCCGGTCGATCCCCGGCTTGCG
* * * * *
3714344 CACCCCGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCATGTGTTGACTTGG
838 CATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAG
* *
3714401 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * * * *
3714466 TGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTACCGCCTTTTTCTTCGTCAGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * *
3714531 CACCATCACCAGAGCATCGTCGGAGAACCTGACAGGTGGGATTGGGGTTCTGACGATCGGGGGGG
131 CACCATCACCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATC-GGGGGG
*
3714596 CCGGGGGGTGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
195 CC-GGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
3714661 TATCCCTCATCAAACCTTGAGAACTCACATCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGT
258 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGT
* *
3714726 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGT-ACAAAATCTTGTAC
323 TGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
3714790 ACTTCGAGTTTTTAGCAGAATTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAG
388 ACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAG
* **
3714855 -TTGGGGCCAAAACTGCTTCGAAAAATTTT-AAAAATCTTGAACCGTAAAAAGTTTCAAAAATCG
453 TTTGGGGCCAAAACTCCTTCGAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
* * * *
3714918 TGAAAAATA-AAAACAAGTCGTCTTGCCATGAAACTTCATGT-AAAGTTTAAGGGACCATTGTAT
518 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
3714981 GAATTTACAGGCCATAAAAATGGCAATTGGCTCATAGAAACTATGAAGATGTG-CGAAACCCAGC
583 GAATTTACAAGCCATAAAAATGGC-ATTGG--CATAGAAA-TATGAAGATGTGCCTAAACCCACC
* * * *
3715045 TACCTA-CC-TCGATCCACGACTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCACCC
644 TACC-ACCCATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCC
*
3715108 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
708 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * * * * ** *
3715173 CCAAGAGGTTTCCGGTAGCAGGATCGATAGCACACAGAGGGGGACCCGGTCGATCCCTTGTTTGC
773 CC-AGAGGGTTACGGTAGTAGGATCGGTAGCACGCAGAGGAGGACCCGGTCGATCCCCGGCTTGC
* * *
3715238 GCATCCCGCCCCTCTGGCTGGCTGAGCATCCGCACGCTCATTTCGTGGGTTGACTTAG
837 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAG
* * *
3715296 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCTTTCCCAGTCGAAGATCGGATCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* ** * * * * *
3715361 CGAGGGTTACGGCCTCACATGCTGGGGTTGGGCATGTGCTGGTACCGCATTTTTCTTTGCCGGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * ** * * *
3715426 CACCATCACCGGAGCATCATCGAAGAACCTGACCGACGGCATTGGCGTTTCGACAATCAGGGGGG
131 CACCATCACCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATC-GGGGGG
* * *
3715491 CCGGGGCGGTGTGTGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
195 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
** * * *
3715556 TCATTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG
260 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGTTG
3715621 CCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
325 CCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
3715686 TT-GAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
390 TTCG-AGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAG
* *
3715750 TTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAAA
453 -TTTGGGGCCAAAACTCCTT-CGAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAAA
* * *
3715815 TCATGAATAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTG
515 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
3715880 TATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
580 TATGAATTTACAAGCCATAAAAATGGCATTGGCAT--AGAAATATGAAGATGTGCCTAAACCCAC
* * * *
3715945 CTACCACCCTATCGATCCACAGCTTGCGCATCCCGTGTCTCTGGCCGGTGTGGTGCCCGCCCGCA
643 CTACCACCC-ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-CA
* * * **
3716010 CGCCCGCCCGCTTGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
705 --CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * * *
3716075 CCAG-GCTGAGGGTTACGGCAGTAGGATCGGCAGCACGTAGAGGGGGACCCGTTCGATCCCCAGC
768 CCAGACCAGAGGGTTACGGTAGTAGGATCGGTAGCACGCAGAGGAGGACCCGGTCGATCCCCGGC
* * *** * * * *
3716139 TTGGGCATCCCGCCCCTTTGGCCGGCTGAATGCCCGTACGCTCGTTTCGTGGGTTAACTTAG
833 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAG
* *
3716201 GCATGCGGAGTTCATTCCCAG--T---C-TA---AG---A-T--C---C---GAT-TG----GAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* *
3716240 CGAGGGTTGCGGCAACACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * * *
3716305 CACCATCACC-GAGCATCGACCAGAGAACCTAACCGATGGAATTGGGGTTCCGAAGATC-GGGGG
131 CACCATCACCGGAGCATCG-TCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGG
3716368 CC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT-GCCCTTATATTGGCCTCCCT
195 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCCT
* *
3716431 ATTCCCTCATC-AACCTCGAGAACTCACACCCCCTTAAAGAGGCA-TTGAAATTTTAGCAGGTTT
259 A-TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA-AAGCATTTGAGATTTTA-CAGGTTT
* * * *
3716494 GCTAGCCCTAGTAGCCATTAAAGTGTCTGAAAAGGGGGACACTTTTTTCAAATAGTCA-AAAATC
321 G-TTG-CC-AGTAGCCATTAAAGTGTTTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * *
3716558 TTGTACACTTTGAGTTTTTAGCTAAATTTTTTTGTGCGTGCCAAAAAAAATACAAGGATC-CATC
382 TTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACATC
* ** * *
3716622 CAATAAGTTTGGGCCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
446 TACCAAGTTTGGGGCCAAAACTCC-TTC-GAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* * *
3716687 CAAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTGACGTGAAGGCTCAAGGGA
509 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
3716752 CCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
574 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT--AGAAATATGAAGATGTGCCTAA
* * * *
3716817 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGTCGGTGCAGTGCCCG
637 ACCCACCTACCACCC-ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * * **
3716882 CCCGCCTGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGAAGTTTTTTCCCAGTCTAAG
701 --C-CC-ACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
*
3716947 ATCGGACC
762 ATCAGACC
3716955 GGACTGAGGG
Statistics
Matches: 4586, Mismatches: 577, Indels: 304
0.84 0.11 0.06
Matches are distributed among these distances:
875 15 0.00
876 80 0.02
877 24 0.01
878 262 0.06
879 148 0.03
880 81 0.02
881 27 0.01
883 1 0.00
884 3 0.00
887 1 0.00
889 46 0.01
890 68 0.01
891 74 0.02
892 17 0.00
893 599 0.13
894 96 0.02
895 463 0.10
896 2 0.00
897 17 0.00
898 10 0.00
899 31 0.01
900 192 0.04
901 215 0.05
902 368 0.08
903 104 0.02
904 181 0.04
905 449 0.10
906 131 0.03
907 65 0.01
909 1 0.00
912 10 0.00
913 2 0.00
915 5 0.00
916 5 0.00
917 5 0.00
918 14 0.00
919 6 0.00
920 1 0.00
921 3 0.00
922 1 0.00
923 4 0.00
924 3 0.00
925 2 0.00
926 1 0.00
927 2 0.00
928 2 0.00
929 1 0.00
930 1 0.00
931 2 0.00
932 4 0.00
933 1 0.00
934 3 0.00
935 1 0.00
936 3 0.00
937 13 0.00
938 4 0.00
939 5 0.00
940 4 0.00
942 1 0.00
943 9 0.00
946 1 0.00
949 1 0.00
950 267 0.06
951 3 0.00
952 185 0.04
953 207 0.05
954 33 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
CACCATCACCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGC
CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGTTGC
CAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTT
GGGGCCAAAACTCCTTCGAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCATAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
CATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCTC
GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAGAGGG
TTACGGTAGTAGGATCGGTAGCACGCAGAGGAGGACCCGGTCGATCCCCGGCTTGCGCATCCCGC
CCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAG
Found at i:3717886 original size:26 final size:26
Alignment explanation
Indices: 3717850--3717928 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
3717840 GTTGACTTAG
3717850 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3717876 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
3717902 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3717928 G
1 G
3717929 TCGGGGGGGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3718108 original size:783 final size:786
Alignment explanation
Indices: 3716370--3718664 Score: 2437
Period size: 783 Copynumber: 2.9 Consensus size: 786
3716360 ATCGGGGGCC
* *
3716370 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT-GCCCTTATATTGGCCTCCCTATT
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTCGCACTTGGCCCTTATATTGGCC-CCCTA-T
* *
3716434 CCCTCATC-AACCTCGAGAACTCACACCCCCTTAAAGAGGCATTGAA-ATTTTAGCAGGTTTGCT
64 CCCTCATCAAACCTCGAGAACTCACACCCCCGTAAAGA-GCATTTAAGATTTTA-CAGGTTTGCT
* * *
3716497 AGCCCTAGTAGCCATTAAAGTGTCTGAAAAGGGGGACACTTTTTTCAAATAGTCA-AAAATCTTG
127 -G-CC-AATAGCCATTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * * * * *
3716561 TACACTTTGAGTTTTTAGCTAAATTTTTTTGTGCGTGCCAAAAAAAATACAAGGATC-CATCCAA
188 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * * * * * *
3716625 TAAGTTTGGGCCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
253 CAAGTTAGGGCCAAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTCAA
* * * * * * *
3716690 AAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTGACGTGAAGGCTCAAGGGACCA
318 AAATCATGAAAAATAAAAAACGAGTCGTCATGCCATGAAACTTCACATGAAGGCTTAAGGGACCA
* ** *
3716755 TTCTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
383 TT-GAT-AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCCAAACC
* * * * * * * * *
3716820 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGTCGGTGCAGTGCCCGCCC
446 AACCTACCACCCTATCAATCCACGACTTACGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCC
* * * * *** *
3716885 GCCTGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGAAGTTTTTTCCCAGTCTAAGATC
511 GCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAATCCCAATCTAAGATC
* * * * * * * * * * * ** * ** ** ** *
3716950 GGACCGGACTGAGGGTTGCGGCAGTGCATGCTGGGC-TCGGGCATGCGCTGGTGCC-ACATTTTT
576 AGACAGGAATGAGGGCTACGTCA--GCAAGATCGACAGCACGCA-GAGGGGGACCCGAC-TGATC
*** ** * ** * * * **
3717013 CTTTGC-TG-AGGCACC-ATCATC-GG-AGAACCT--G-ACCGGCA-G--CA-TT-G-GGGTT--
637 CCCGGCTTGCACACCCCGCCCCTCTGGCCG--GCTGAGCACCCACACGCTCATTTCGTGGGTTGA
** * ** * ** * ** * ** * ** * *
3717062 CCGATG-ATTGGGGGGGC-TTGGGCACCATTGCCGGAGCATCGTCGGAGAACCTGACC-GAC--G
700 CTTAGGCATACGGAGTTCATT---C-CCA--GTCTAAGCAT--ACGGAGTTCATTCCCAGTCTAA
* * **
3717122 GC-TTTGG-GGT--TTCGACTA-TC---GGGG
757 GCATATGGAGTTCATTC--CTAGTCTAAGTCG
* *
3717146 GGTCGTGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
1 GG--G-GGGTGTGCGCACATGATGTGCGATGGGTGCTCGCACTTGGCCCTTATATTGGCCCCCTA
* * * *
3717211 TCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTG
63 TCCCTCATCAAACCTCGAGAACTCACACCCCCGTAAAGAGCATTTAAGATTTTACAGGTTTGCTG
*
3717276 CCAATAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACAC
128 CCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
3717341 TTCGATTTTTTAGCTTAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGT
193 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
3717406 TCAGGGCCAAAACA-CCTTTCGAAAAAATTTTAAAAGATCCCAAACCGA-AAAAAGTTTCAAAAA
258 T-AGGGCCAAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACC-ATAAAAAGTTTCAAAAA
* * * *
3717469 TCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTG
321 TCATGAAAAATAAAAAACGAGTCGTCATGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
***
3717534 -T-A-TTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCCAAACCAACCT
386 ATAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCCAAACCAACCT
* * * * *
3717596 ACCATCCTATCGATCCATGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
451 ACCACCCTATCAATCCACGACTTACGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCG
* * * * *
3717661 CCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACA
516 CCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAATCCCAATCTAAGATCAGACA
* * * *
3717726 GGAATGAGGGCTACGGT-AGTAGGATCGACAGCACGCAGAGGGGGACCCG-GTCGATCCTCGGCT
581 GGAATGAGGGCTAC-GTCAGCAAGATCGACAGCACGCAGAGGGGGACCCGACT-GATCCCCGGCT
* * * *
3717789 TGCGCATCCCGCCCCTCTGGCCGGCTGTGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCAT
644 TGCACACCCCGCCCCTCTGGCCGGCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCAT
3717854 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTC
709 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTC
3717919 CTAGTCTAAGTCG
774 CTAGTCTAAGTCG
* *
3717932 GGGGGGTGTTCGCACATGATGTGCGATGGGTGCTCGCCCTTGGCCCTTATATTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTCGCACTTGGCCCTTATATTGGCCCCCTATCC
3717997 CTCATCAAACCTCGAGAACTCACACCCCCGTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCGTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCA
*
3718062 GTAGCCATTAAAGTGTCT-AAATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
131 ATAGCCATTAAAGTGTCTGAAA-TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
3718126 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTATCAAGTTT
195 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTA
* *
3718191 GGGGCAAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCAT
260 GGGCCAAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCAT
* * *
3718256 GAAAAATAGAAAATGAGTCGTCATGCCATGAAACTTCACATGAAGGCTTAAGGGACCTTTGTATG
325 GAAAAATAAAAAACGAGTCGTCATGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG-AT-
* * *
3718321 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAT
388 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCCAAACCAACCTAC
* *
3718386 CACCCTATCAATCCACGGCTTACGCATCCCTTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCC
453 CACCCTATCAATCCACGACTTACGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCC
* **
3718451 CATCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAATCCCAATCTAAGATCAGATTGG
518 CACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAATCCCAATCTAAGATCAGACAGG
*
3718516 AATGAGGGCTACGTCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCA
583 AATGAGGGCTACGTCAGCAAGATCGACAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCA
* * * * *
3718581 CACCCCGCCTCTCTGGCTGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
648 CACCCCGCCCCTCTGGCCGGCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGG
3718646 AGTTCATTCCCAGTCTAAG
713 AGTTCATTCCCAGTCTAAG
3718665 ATCAAACTGG
Statistics
Matches: 1295, Mismatches: 171, Indels: 94
0.83 0.11 0.06
Matches are distributed among these distances:
768 1 0.00
769 17 0.01
770 6 0.00
771 185 0.14
772 7 0.01
773 2 0.00
774 28 0.02
775 84 0.06
776 117 0.09
777 18 0.01
778 28 0.02
779 87 0.07
780 18 0.01
781 12 0.01
782 19 0.01
783 344 0.27
784 10 0.01
785 3 0.00
786 4 0.00
787 3 0.00
788 301 0.23
789 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (786 bp):
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTCGCACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCCGTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCA
ATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTAG
GGCCAAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATG
AAAAATAAAAAACGAGTCGTCATGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGATAAT
TTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCCAAACCAACCTACCAC
CCTATCAATCCACGACTTACGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCCCAC
CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAATCCCAATCTAAGATCAGACAGGAAT
GAGGGCTACGTCAGCAAGATCGACAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCACAC
CCCGCCCCTCTGGCCGGCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCT
AAGTCG
Found at i:3721779 original size:870 final size:870
Alignment explanation
Indices: 3719417--3721878 Score: 3432
Period size: 877 Copynumber: 2.8 Consensus size: 870
3719407 CGGCCGGCTG
* *
3719417 AGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCA
1 AGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
** * * * ** * * *
3719482 GACCGGACCGAGCATTACGGTAGCACATGCTGGGCTTGGGCATGTGCTCGTGCCGTATTTTTCTT
66 GACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTT
* * * * * *
3719547 TGCCGAGGCACCATTGTCGGAGCATCGTC-GAAGAACCTGACAGACAGCATCGGGGTTCTGACGA
131 TACCGGGGCACCATCGTCGGAGCATCGTCAG-AGAACCTGACCGACGGCATCGGGGTTCCGACGA
*
3719611 T-TGGGGGGCCGGGGGGAGGGTGTGGGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTAT
195 TCGGGGGGGCC-GGGGGA--GTGTGGGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTAT
*
3719675 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTAGAGATTTT
257 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
3719740 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
322 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * *
3719805 AATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAGGGATCA
387 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC-AACAAAATACAAGGATCA
* * *
3719870 CATCTACCAAGTTTGGGGCCAAAAATCCTTCC-AAAAAAATTTAAAAAATCCT-GAACCGCAAAA
451 CGTCTACCAAGTTTGGGGCCAAAAAT-CTTCCGAAAAAATTTTAAAAAATCCTCGAA-C-TAAAA
**
3719933 A-TTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
513 AGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
*** * *
3719997 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACACGCAGAAATATGAAGTTGTG
578 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTGCACAGAAATATGAAGATGTG
* * *
3720062 CCTAACCCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGT
643 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* * * * *
3720127 GCCCTCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
708 G----CCCGCCCGCACGCCCGCTCATTTCGTCGGCTGGCTCAGGCATACAGAGTTCATTCCCAGT
* *** * * ** * * * *
3720192 CTAAGGTTGGACTGAACTGAGGGTTGCGGCAGCAGGATTGGCCGTACGTAGAGGGGGCCCCGGTC
769 CTAAGATCAAACAGAACTGAGGGTTGCGGCAACAGGATCAGCAGCACATAGAGGGGGACCCGGTC
* *
3720257 AATCCCCGGATTGCGCATCCCGCCCCTTTGGCTGCTG
834 AATCCCCGGATTGCGCATCCCGCCCCTCTGGCTGCTA
* * *
3720294 AGCACCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAAGATCG
1 AGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* *
3720359 GACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCAGGCATCTGCTGGTGTCGCATTTTTCTT
66 GACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTT
* * * *
3720424 TACCGGGGCACCATCGCCAGAGCATCGTCA-AGGAACCTGACCGGCGGCATCGGGGTT-CGGCGA
131 TACCGGGGCACCATCGTCGGAGCATCGTCAGA-GAACCTGACCGACGGCATCGGGGTTCCGACGA
** * ** *
3720487 TCGGGGGTTTCGGGGGGAGGGTGTGGGCACATGATGTATGGTGGGTGCTAGTACTTGGCCCTTAT
195 TCGGGGG-GGCCGGGGGA--GTGTGGGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTAT
* * *
3720552 TTTGGCCCCCTATCCCTCATCAAACCTCGAGAATTCACAGCCCCTTAAAGAGCATTTGAGATTTT
257 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
*
3720617 ACAAGTTTGCTGCCAGTAGCCATTAAAGTGT-TCG-AATGGGGACACTTTTTTCAAATGGTCAC-
322 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACA
*
3720679 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAAGCCAACAAAAATACAAGGATC
386 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAC-AAAATACAAGGATC
* *
3720744 ACGTCTACCAAGTTTGGGGCCAAAAATCATGCGGAAAAAATTTTAAAAAATCC-CGAACTGCAAA
450 ACGTCTACCAAGTTTGGGGCCAAAAATC-TTCCGAAAAAATTTTAAAAAATCCTCGAACT--AAA
* * *
3720808 AAGTTTGAAAAATCATAAAAAATAGAAAATGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTT
512 AAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
3720873 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTGCACAGAAATATGAAGATGT
577 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTGCACAGAAATATGAAGATGT
* * *
3720938 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCCCTGGCCGGTGTAG
642 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * *
3721003 TGCCCGCTCGCACGCCCGCTCATTTTGTCGGCTGGCTCAGGCATACATAGTTCATTCCCAGTCTA
707 TGCCCGCCCGCACGCCCGCTCATTTCGTCGGCTGGCTCAGGCATACAGAGTTCATTCCCAGTCTA
* *
3721068 AGATCAAACCAG-A-TGGAGGGTTGCGGCAACAGGATCAGTAGCACATAGAGGGGGACCCGGTCG
772 AGATCAAA-CAGAACT-GAGGGTTGCGGCAACAGGATCAGCAGCACATAGAGGGGGACCCGGTCA
*
3721131 ATCCCC-GACTTGCGCATCTCGCCCCTCTGGCTAGCTA
835 ATCCCCGGA-TTGCGCATCCCGCCCCTCTGGCT-GCTA
* *
3721168 AGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
1 AGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
**
3721233 GACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCAGAAATGTGCTGGTGTCGCATTTTTCTT
66 GACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTT
* * * *
3721298 CACCGGGGCACCATCGTCGGAGCATCGCCAGACAACCTGACCGACGGCATTGGGGTTCCGACGAT
131 TACCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGACCGACGGCATCGGGGTTCCGACGAT
* * *
3721363 CGGGGGGGCCGGGGGA-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCGTTATATTG
196 CGGGGGGGCCGGGGGAGTGTGGGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTG
* * * *
3721427 GCCCCCTATCCCTCATCGAACCTCGGGAACTCACA-CCCCTTAAAGAGTATTTGAGATTTCACAG
261 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
3721491 GTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
326 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
3721556 TTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAATACAAGGATCACGTCT
391 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAATACAAGGATCACGTCT
*
3721621 ACCAAGTTTGGGGCCAAAAATCTTCCGAAAAAATTTTAAAAAA-CCTCAAATCATAAAAAGTTTC
456 ACCAAGTTTGGGGCCAAAAATCTTCCGAAAAAATTTTAAAAAATCCTCGAA-C-TAAAAAGTTTC
* * * *
3721685 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAAGCTTAAGGGAC
519 AAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * * * *
3721750 CATTTTATGAATTTAGAAGCCGTAAAAATGGCATTGGCATG-A-AAAAATATGAAGATGTGGCTA
584 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGG--TGCACAGAAATATGAAGATGTGCCTA
* * * * *
3721813 AACCTACCTGCCACCCTATCGATCCATGGCTTGTGCATCCCGTCTCTCTGGCTGGCGTAGTGCCC
647 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
3721878 G
712 G
3721879 ACTGCCCGCC
Statistics
Matches: 1411, Mismatches: 148, Indels: 59
0.87 0.09 0.04
Matches are distributed among these distances:
869 2 0.00
870 254 0.18
871 146 0.10
872 53 0.04
873 126 0.09
874 184 0.13
875 100 0.07
876 61 0.04
877 484 0.34
878 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (870 bp):
AGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
GACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTT
TACCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGACCGACGGCATCGGGGTTCCGACGAT
CGGGGGGGCCGGGGGAGTGTGGGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTG
GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAATACAAGGATCACGTCT
ACCAAGTTTGGGGCCAAAAATCTTCCGAAAAAATTTTAAAAAATCCTCGAACTAAAAAGTTTCAA
AAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
TTGTATGAATTTACAAGCCATAAAAATGGCATTGGTGCACAGAAATATGAAGATGTGCCTAAACC
CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
GCACGCCCGCTCATTTCGTCGGCTGGCTCAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAAC
AGAACTGAGGGTTGCGGCAACAGGATCAGCAGCACATAGAGGGGGACCCGGTCAATCCCCGGATT
GCGCATCCCGCCCCTCTGGCTGCTA
Found at i:3722730 original size:26 final size:26
Alignment explanation
Indices: 3722694--3722746 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3722684 GTTGACTTAG
3722694 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3722720 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3722746 G
1 G
3722747 ACCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3725842 original size:896 final size:891
Alignment explanation
Indices: 3721905--3726344 Score: 5861
Period size: 896 Copynumber: 5.0 Consensus size: 891
3721895 CCGGCTTATT
* ** * * *
3721905 CATTTTTCTTTGCTGGGGCACCATCATCGGAGCATCATCGAAGAACCTGACCGGCGGCATCGAGG
1 CATTTTTCTTCG-TGGGGCACCATC--CGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGG
* ** * * *
3721970 TTCTGGTGATCGGGGGGGTCGGAGGGGGGTGTACGCACATGATGTGTGATGGGTGCTGGTACTTG
63 TTCCGACGATCGGGGGGG-C--CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
3722035 GCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTT
125 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * *
3722099 GAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACATTTTTTTGAAAT
190 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
3722164 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTCTTGTGCATACCAACAAAAATAC
255 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
* * * * *
3722229 AAGGATCACGTCTACCAGGTTTGGGGCCAAAACCCCTTCCAAAAAAATTATGAAAAATCTCGAAC
320 AAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAAC
3722294 CGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGA
384 CGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGA
*
3722359 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
449 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
3722424 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
514 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * **
3722489 GCGTAGTGCCCGCCCGCCCGCCTGTTCCTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCC
579 GCGTAGTGCCCGCCCG-CC-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCC
* * * * * * * * *
3722554 AGTCTAAGATCGGACTGAATCGAGGGTTGCGATAGCAGGATCGGTACCATGCAGGGGGGGACCTG
641 AGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGCAAGATCGGTAGCACGTAGAGGGGGACCCG
* * * * * * * *
3722619 ACCAATCCCCGGCTTGCGCATCCCACCCCACTGGCCGGTTGAACGCTCGCACGTTCATTTCGTGG
706 ACCGAT-CCCAGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCGTGG
* * *
3722684 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAC
770 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGAT
* *
3722749 CAGACCGGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATTTGCTGGTGCCG
835 CAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * *
3722806 CATTTTTCTTTGTCGGAGCACCAT------CAT---CGGAGAACCTGACAGGCGACATTGGGGTT
1 CATTTTTCTTCGT-GGGGCACCATCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTT
** * *
3722862 CCGAAAATCGGGGGGACCAGGGGGGTGTGCGCGCATGATGTGCGATGGGTGCTGGTACTTGGCCC
65 CCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
3722927 TTATATTGGCCCCCTATCCCGT-ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
129 TTATATTGGCCCCCTATCCC-TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
3722991 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
193 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
3723056 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTTCATGCCAAAAAAAATACAAG
258 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
* * * * * *
3723121 GATCACGTCTACCATGTTTGGGGCCAAAACTCCTTTCGAAAAAACTTAAAAAAATCTTGAACAGT
323 GATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGT
* ** * * * * * *
3723186 AAAAATTTTTGAAAATCGTGAAAAATTAAAAACGAGTCGTGTTGCCATGAAGCTTCACGTGACGG
387 AAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
3723251 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATAAAGA
452 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* * *
3723316 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCATCTCTCTGG-CGGTG
517 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
*
3723380 TAGTGCCCGCCCGCCCACCCGTCCGTTCGTTTCGTCGGGTGGCTTAGGCATACAGAGTTCATTCC
582 TAGTGCCCGCCCG--C-CCCG--C--TCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCC
* * * * *
3723445 CAGTCTAAGATTGGATCAGA-CTGAGGGTTGCGGTAGCAAGATCGATAGCACGTAGAGGGGGACT
640 CAGTCTAAGATCGGACCGGATC-GAGGGTTGCGGTAGCAAGATCGGTAGCACGTAGAGGGGGACC
* * * * * * ** * * * *
3723509 CGGCCAATCCCTAACTT-CTACATCCCGCCCTTCTGGCCGACTGAGCGCCCGTATGCTCGTTTTG
704 CGACCGATCCC-AGCTTGC-GCATCCCACCCCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCG
* * * * *
3723573 TGGGTGGATTTAGGCATACGGAGTTCATTTCTAGTCTAAGCAGACGGAGTTCATTCCCAGTCTAA
767 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAAACGGAGTTCATTCCCAGTCTAA
* * * *
3723638 TATCAGACCGGACCGAGGGTTGCGACAGCACATGTTGGGCTTGGGCATGTGCTCGTGCCG
832 GATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * * * * **
3723698 CATTTTTCTTAGACGGGGAAACATCGCCAGGAGCATCGCCAGAGAACCTAACTGGCAACATTGGG
1 CATTTTTCTTCG-TGGGGCACCAT--CC-GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGG
*
3723763 GTTCCGACGATCGGGGGGGCCGGGGGGTGTGCCCACATGATGTGCGATGGGTGCTGGTACTTGGC
62 GTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
** *
3723828 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATGCTCCCTTAAAGAGCATTTGA
127 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
3723893 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCT-AGAATGGGGACACTTTTTTCAAATG
192 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATG
* * *
3723957 GTTACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAAAAAAAGTACA
256 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* * * *
3724021 AGGATCAGGTCTGCCAAGTTTGACGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACC
321 AGGATCACGTCTACCAAGTTTG-GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACC
* * *
3724086 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAGGTGAA
385 GTAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * *
3724151 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAAAAATATGAA
450 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
* * * * *
3724216 TATGTGCCTAACCCCAGCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGA
515 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* *
3724281 CGTAGTGCCCGCCCGCCCGCCAGCTCGTTTCGTCGGTTGGCTTAAGCATACGGAAGTTCATTCCC
580 CGTAGTGCCCGCCCG-CC-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACAG-AGTTCATTCCC
* * * * **
3724346 AGTCTAAGATCGGACCGAATCGA--GTTGCGGTAGTAGGATCGGCAGCACACAGAGGGGGACCCG
641 AGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGCAAGATCGGTAGCACGTAGAGGGGGACCCG
* * * * * *
3724409 ATCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGATTGAGCGA-CCACACACTCGTTCCGTG
706 ACCGATCCCAG-CTTGCGCATCCCACCCCTCTGGCCGGTTGAGC-ACCCGCACGCTCGTTTCGTG
* *
3724473 GGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAAGCAAATGGAGTTCATTCCCAGTCTAAGA
769 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGA
* * * * * * *
3724538 TCGGACCAGACTGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCA
834 TCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * *
3724596 CATTTTTCTTCGTCGAGG---CA--C----CATCGCCGGAGAATCTGACCGGCGGTATTGGTGTT
1 CATTTTTCTTCGT-GGGGCACCATCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTT
* * * * *
3724652 TCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTACGGTCGGTGCTGGTACTTGGCCCT
65 CCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
3724717 TTTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCACCTTAAAGAGCATTTGAGAT
130 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * *
3724782 TTTACAGGTTTGCTGCCAGTAGCCATCAATGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCA
195 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
3724847 CAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
260 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGA
* * * * *
3724912 TCACATCTACCAAGTTCAGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAA
325 TCACGTCTACCAAGTT-TGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAA
* * * *
3724977 AAAGTTTCAAAAATCATGAAAAA-AAGAAAACGAGTCGTCTTGCCATGAAACTTTAGGTGAAGTC
389 AAAGTTTCAAAAATCATGAAAAATAA-AAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
*
3725041 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAAGAT
453 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
* *
3725106 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGT
518 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * *
3725171 AGTGCCTGCCCG-CTCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTTATTCCCAGTCTAA
583 AGTGCCCGCCCGCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * *
3725235 GATCGAACCGGACCGAGGGTTGCGGCAACAAGATCAGTAGCACGTAGAAGGGGACCCGACCGATC
648 GATCGGACCGGATCGAGGGTTGCGGTAGCAAGATCGGTAGCACGTAGAGGGGGACCCGACCGATC
* * * *
3725300 CGCAGCTTGCGCTTCTCGCCCCTCTGGCCGGTTGAGCACCCGCACGC-CTGTTTCGCGGGTTGAC
713 C-CAGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCACCCGCACGCTC-GTTTCGTGGGTTGAC
3725364 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCAGACC
776 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * *
3725429 GGACCGAGGGTTGCCATAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCG
841 GGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
*
3725480 CATTTTTCTTCGTGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGCGT
1 CATTTTTCTTCGTGGGGCACCAT--CCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGT
* *
3725545 TCCTG-CGATCGGGGGGGCCGGGGGGGTTGTGCGCACATGGTGTGCGATGGATGCTGGTACTTGG
64 TCC-GACGATCGGGGGGGCC-GGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
3725609 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTG
126 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
3725674 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
191 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
*
3725739 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATACA
256 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* ** * *
3725804 GGGATCATATCTACCAAGTTTGGGACCAAAAATCCTTCCAAAAAAATTTTAAAAAATC-CTGAAC
321 AGGATCACGTCTACCAAGTTTGGG-CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAAC
* * * * * *
3725868 CGTAAAAAGTTTCGAAAGTCATGAAAAATAAAAAATGAGTCATCTTCCCGTGACACTTCACGTGA
384 CGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGA
* *
3725933 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTACACAGAAATATGA
449 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
3725998 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
514 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * *
3726063 GCATAGTGCTTGCCCGCCCGCCCCCCCGCTCGTTTCGTCGATTGGCTGAGGCATAC-GAAGTTCA
579 GCGTA--G--TGCCCGCCCG---CCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAG-AGTTCA
** * * * * * *
3726127 TTCCCAGTCTAAGATTAGATCGGATTGAGGGTTACGGCAACAAGATCGGCAGCACGTAGAGGGGG
636 TTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGCAAGATCGGTAGCACGTAGAGGGGG
** * * ** *
3726192 ACTGGGCCGATCCTCAGCTTGCGCATCCCATCCCTCTGGCCGGCAGAGCACCCGCACGCTTGTTT
701 ACCCGACCGATCC-CAGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCACCCGCACGCTCGTTT
* * *
3726257 CGTGGGTTGACCTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
765 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAAACGGAGTTCATTCCCAGTCT
* *
3726322 AAGATCGGACCGGATCGAGGGTT
830 AAGATCAGACCGGACCGAGGGTT
3726345 ACGGTAGCAG
Statistics
Matches: 3099, Mismatches: 366, Indels: 145
0.86 0.10 0.04
Matches are distributed among these distances:
882 30 0.01
883 34 0.01
884 202 0.07
885 3 0.00
886 238 0.08
887 276 0.09
888 102 0.03
889 376 0.12
890 37 0.01
891 6 0.00
892 255 0.08
893 3 0.00
894 46 0.01
895 13 0.00
896 450 0.15
897 2 0.00
898 197 0.06
899 27 0.01
900 38 0.01
901 28 0.01
902 256 0.08
903 216 0.07
904 264 0.09
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
CATTTTTCTTCGTGGGGCACCATCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTC
CGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
CACGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAA
AGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTG
CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
GCCCGCCCGCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
CGGACCGGATCGAGGGTTGCGGTAGCAAGATCGGTAGCACGTAGAGGGGGACCCGACCGATCCCA
GCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGG
CATACGGAGTTCATTCCCAGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
GAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
Found at i:3726309 original size:26 final size:26
Alignment explanation
Indices: 3726272--3726324 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3726262 GTTGACCTAG
3726272 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
3726298 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3726324 G
1 G
3726325 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:3726481 original size:184 final size:185
Alignment explanation
Indices: 3726113--3726528 Score: 543
Period size: 184 Copynumber: 2.3 Consensus size: 185
3726103 ATTGGCTGAG
* * * *
3726113 GCATACGAAGTTCATTCCCAGTCTAAGATTAGATCGGATTGAGGGTTACGGCAACAAGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAACAAGATCGGCA
* * * * *
3726178 GCACGTAGAGGGGGACTGGGCCGATCCTCAGCTTGCGCATCCCATCCCTCTGGCCGGCAGAGCAC
66 GCACGCAGAGGGGGACTCGGCCGATCCCCAGCTTGCGCATCCCATCCCTCTAGCCGGCAGAACAC
*
3726243 CCGCACGCTTGTTTCGTGGGTTGACCTAGGCATACGAAGTTCATTCCCAGTCTAA
131 CCGCACGCTCGTTTCGTGGGTTGACCTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * *
3726298 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGCAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAACAAGATCGGCA
* * * *
3726363 GCACGCAGAGGGGG-CTCGGTCGATCCCC-GACTTGCG-ACTCCCATCTCTCTAGTCGGCTGAAC
66 GCACGCAGAGGGGGACTCGGCCGATCCCCAG-CTTGCGCA-TCCCATCCCTCTAGCCGGCAGAAC
* * *
3726425 GCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-AGAGTTCATTCCCAGTCTAA
129 ACCCGCACGCTCGTTTCGTGGGTTGACCTAGGCATACGA-AGTTCATTCCCAGTCTAA
* ** *
3726482 GAATACGGAGTTCATTCCCAGTCTAAGATCAGATTGAATCGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTT
3726529 GCAGTAGCAC
Statistics
Matches: 201, Mismatches: 27, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
183 3 0.01
184 129 0.64
185 69 0.34
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.23
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAACAAGATCGGCA
GCACGCAGAGGGGGACTCGGCCGATCCCCAGCTTGCGCATCCCATCCCTCTAGCCGGCAGAACAC
CCGCACGCTCGTTTCGTGGGTTGACCTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:3726494 original size:26 final size:26
Alignment explanation
Indices: 3726458--3726509 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
3726448 TGACTTAGGC
3726458 ATACAGAGTTCATTCCCAGTCTAAGA
1 ATACAGAGTTCATTCCCAGTCTAAGA
*
3726484 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACAGAGTTCATTCCCAGTCTAAGA
3726510 TCAGATTGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGA
Found at i:3727334 original size:26 final size:26
Alignment explanation
Indices: 3727298--3727350 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3727288 GTTGACTTAG
3727298 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
3727324 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3727350 G
1 G
3727351 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:3728938 original size:26 final size:26
Alignment explanation
Indices: 3728908--3728960 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3728898 GTTGACTTAG
3728908 GCATACGGAGTTCATTACCAATCTAA
1 GCATACGGAGTTCATTACCAATCTAA
* *
3728934 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAATCTAA
3728960 G
1 G
3728961 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAATCTAA
Found at i:3729825 original size:26 final size:26
Alignment explanation
Indices: 3729796--3729848 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3729786 GTTGACTTGG
3729796 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
3729822 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
3729848 G
1 G
3729849 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:3730300 original size:912 final size:883
Alignment explanation
Indices: 3728029--3733447 Score: 6346
Period size: 858 Copynumber: 6.1 Consensus size: 883
3728019 GTTGGCTTAG
* ** ** * *
3728029 GCATACGGAGTTCGTTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGGGGCAACACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
* * * * **
3728094 CTCGGGCATTTACTGGTGCCGCATTTTTCTTCATCAAGGCACCATCGTCGGAGCATCGCTAGAGA
66 CTCAGGCATGTGCTGGTGCCACATTTTTCTTC-TC---G------C--CGGAGCATCGCCGGAGA
* * * * **
3728159 ACCTGACCGACGGCATTAGGGTTTCGACGATCGGGGGGGCCGACGGGGGTGTGTACACATGATGT
119 ACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGG-CG-GGGGGGTGTGCGCACATGATGT
* * *
3728224 GCAATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
182 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
3728289 CACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
247 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AA
* * *
3728354 TGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGGTGAATTTTTTT
311 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
3728419 GTGCATGCCAACAAATATACAAGGATCACGTCTACCAAGTTT-AGGCCTAAAACTCTTTCGAAAA
376 GTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCAAAA
* * * * *
3728483 AAATTTTAAAAAATCCCAAACCATAAAAAGTTTTAAAAATCATGGAAAATAGAAAACGAGTCGTG
440 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * *
3728548 TTGCCATTAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
505 TTGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
3728613 CATTGGCATGCAGAAATATGTAA-ATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
570 CATTGGCACGTAGAAATATG-AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
3728677 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCACTCATTTCGTCGGTT
634 GCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCGTCCGCTCGTTTTGTCGGTT
* * * ** * * *
3728742 AGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATTGGACCAGACCGAGGGTTACGGTAGCAGG
695 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGC-ATAGCAGG
* * *** * *
3728807 ATCGGCAGCACGCAGAGGGGGACCC-AGTCGATCCCCGACTTGCATATCCCGCCCCTCTGGCCGG
759 ATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCTG-CTTGCGCGTCCCACCCCTCTGGCCGA
* * * * * *
3728871 CTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTACCAATCTAA
822 CTGAGCGCCCGTACGCTCATTTCATGGGTTGACTT-GGGATACGGAGTTCATTCCCAGTCTAA
* * * * * *
3728934 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGGCCGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
***
3728999 CTC-GGCCATGTGCTGGTGTTTCATTTTTC-T-T---C---G--T---CGGAGAACCTGACC-AG
66 CTCAGG-CATGTGCTGGTGCCACATTTTTCTTCTCGCCGGAGCATCGCCGGAGAACCTGACCGA-
* * * *
3729049 TGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGTGTGC
129 CGACATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * * *
3729114 TGGTACTTGGCCCTTATATCGACCCCCTATCCCACATCAAACCTCGAGAACTCACGCCCCCTTAA
193 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
3729179 AGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTGGCCATTAAAATGTCTGAAATGGGGACACTT
258 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AATGGGGACACTT
* * *
3729244 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTATGCATGCCAA
322 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
3729309 GAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAAAATTTTAAAAA
387 CAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
* * *
3729374 ATCCTGAACCGTAAATAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGACTTGCCATGAAAA
452 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG---T--C-T-----
* * **
3729439 TGGACCATAGAAAACTTCATGTGAAGGGTTAAGGGACCATTGTACAAATTTACAAGCCATAAAAA
506 T-G-CCAT-G-AAACTTCATGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
3729504 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTTTCGATCCACGGC
567 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
3729569 TTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCTGCTCGTCCGCTCATTTTGTCAGTTGG
632 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTTGTCGGTTGG
* *
3729634 CTTAGGCATATGGAGTTCATTCCCTA-TCTAAGATCAGACCAGATTGAGGGTTGCATAGCAGGAT
697 CTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCAGACTGAGGGTTGCATAGCAGGAT
* * * * **
3729698 CGGCAGCACACAGAGGGGGACCCGGCCGATCCCTGCTTGCGCATCCCGCCCCTCTGGCCGGTTGA
761 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGCTTGCGCGTCCCACCCCTCTGGCCGACTGA
* * *
3729763 ACGCCCGCACGCTCATTTCATGGGTTGACTTGGGCATACGGAGTTCACTCCCAGTCTAA
826 GCGCCCGTACGCTCATTTCATGGGTTGACTTGGG-ATACGGAGTTCATTCCCAGTCTAA
* **
3729822 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
* * * *
3729887 CACAGGCATGTGCTAGCGCTACATTTTTCTTCGTCGAGGCACCATCGTCAGAGCATCGCCGGAGA
66 CTCAGGCATGTGCTGGTGCCACATTTTTCTTC-TC---G---C--CG---GAGCATCGCCGGAGA
* * * * *
3729952 ACCTGACCGACGACGTTAGGGTTACGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGT
119 ACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
* * * *
3730017 GATGGGTGCTGGTACTTGGCCGTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGATCTCATA
184 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
3730082 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTGAATG
249 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAATG
*
3730147 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTGCGAGTTTTTAGCTGAATTTTTTTGT
313 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
3730212 GCATGCCAACAAAAATACAATGAGCAAGTCTACCTAGTTTGGGGCCAAAACTCCTTCCGAAATAA
378 GCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* *
3730277 TTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
443 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
3730342 CCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
508 CCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
3730407 TGGCACGTAGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTACGC
573 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
3730472 ATCCCGTCTTTCTGGCCGGCGTAGTGCCCG-CC-CCCGCCCGCTCGTTTCT-TTGGTTGGCTTAG
638 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTT-TGTCGGTTGGCTTAG
* * ** *
3730534 GCATACGGAGTTCATTTCCAGTCTAACATCAGACCAGACCAAGGGTTACAGTAGCAGGATCGGCA
702 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCA-TAGCAGGATCGGCA
* * * ** * * *
3730599 GCACGCAGAGGGCGACCTGACCGATCCCCGACTTGCGCGTCCCTTCCCTCTGACCGACAGAGTGC
766 GCACGCAGAGGGGGACCCGACCGATCCCTG-CTTGCGCGTCCCACCCCTCTGGCCGACTGAGCGC
* *
3730664 CCGTACGCTCGTTTAATGGGTTGAC-T----T----AG----------G-----
830 CCGTACGCTCATTTCATGGGTTGACTTGGGATACGGAGTTCATTCCCAGTCTAA
* * * * *
3730694 G-ATACGGAGTACATTCCCAGTCTAAGATCGGACCAGACCAAGTGTTGCTGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
*
3730758 CTCAAGCATGTGCTGGTGCCACATTTTTC-T-TCGCCGGAGCATCGCCGGAGAACCTGACCGACG
66 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCTCGCCGGAGCATCGCCGGAGAACCTGACCGACG
* * * * *
3730821 GCATTGGGGTTCTGACGATCAGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATAGGTGCTG
131 ACATTGGGGTTCCGACGATC-GGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * * *
3730886 GTACTTGGCCCTTATATCGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAGAC
195 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
3730951 AGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCAATTAAAGTGTCTGAGATGGGGACACTTTT
260 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-ATGGGGACACTTTT
* * * *
3731016 TTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGATGAATTTTTTTGTGCATGGCAACA
324 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * *
3731081 AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTAAAAAAAT
389 AAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
* * *
3731146 CCCGAACCGTAAAAAGTTTTAAAAATCATAAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTT
454 CCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* **
3731211 CACGTGAAGGCTT-AAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAG
519 CATGTGAAGGCTTAAAG-GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
** * *
3731275 AAATATGAAGATGTTTCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGCCTC
583 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * *
3731340 TCTGGCCAGCATAGTGCCCGCCCGCCCGTCGGCAAGTTCGTTTCGTTGGTTGGCTTAGGCATACG
648 TCTGGCCGGCGTAGTGCCCGCCCGCCCGTC--C--GCTCGTTTTGTCGGTTGGCTTAGGCATACG
* * * *
3731405 GAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGTTGTGGCA-A-CAGGATCGACAGCACGCA
709 GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAG-GGTTGCATAGCAGGATCGGCAGCACGCA
* * ** *
3731468 GAGGGGGACCCGACCGATCCCTGGCTTACGCATCCCACCCCTCTGGCCGACTGAGCGTTCGTACA
773 GAGGGGGACCCGACCGATCCCT-GCTTGCGCGTCCCACCCCTCTGGCCGACTGAGCGCCCGTACG
* *
3731533 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 CTCATTTCATGGGTTGACTT-GGGATACGGAGTTCATTCCCAGTCTAA
** * * * * *
3731581 GCATACATAGTTCATCCCCAGTGTAAGATAGGACCAGACCGAGGGTTCCAGCAGCACATGATGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
* * * * *
3731646 CTCAGGCATGTGATGGTGCCGCATTTTTCTTCATCG-GGGCACCATCGTCGGAGAACCTGACCGA
66 CTCAGGCATGTGCTGGTGCCACATTTTTCTTC-TCGCCGG-AGCATCGCCGGAGAACCTGACCGA
* * * * * * * *
3731710 CGGCATCGGGGTTCCGGCGATCGGGAGGTCGAGGGGGTGTGCACACATGATGTGCGATGAGTGCT
129 CGACATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * *
3731775 GGTACTTGGCCCTTATATTGGCCCCTTATCTCTCATCAAACCTCGAGATCTCACACCCTCTTAAA
194 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
3731840 GAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTTGAATGGGGACACTTT
259 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAATGGGGACACTTT
* * *
3731905 TTTAAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAA-
323 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * * * * *
3731969 AAAAATACAATGAGCACGTCTACCTAGTTTGGGGACAAAACTCCTTCCGAAAGAATTTTAAAAAA
388 AAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
* * * * *
3732034 TCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTCGCCATGAAACT
453 TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
3732099 TCATGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
518 TCATGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
* * * *
3732164 AAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCACATCTCGTCTT
583 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * *
3732229 TCTGGTCGGCGTAGTGCCCGCCCGCCCGTTCGTCCGCACG--TT-TC-GTCGG-TT-GGC-TA--
648 TCTGGCCGGCGTAGTGCCCGCCCG-CC---CGTCCGCTCGTTTTGTCGGTTGGCTTAGGCATACG
* * * * * *
3732285 -AG---ATT---AGACT--G----GACC-GA---AGGTTGTGGC--AGCAGGATCGGTAGTATGT
709 GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGG--GTTGCATAGCAGGATCGGCAGCACGC
* ** * * * * * *
3732331 AGAGGGGGACCAGGTCGATCCCCGGCTTGCGCGTCCCGCCCCTCTAGTCGACTGAGTGCCTGTAC
772 AGAGGGGGACCCGACCGAT-CCCTGCTTGCGCGTCCCACCCCTCTGGCCGACTGAGCGCCCGTAC
* *
3732396 GCTCATTTCGTTGGTTGACTTAGGGATACGGAGTTCATTCCCAGTCTAA
836 GCTCATTTCATGGGTTGACTT-GGGATACGGAGTTCATTCCCAGTCTAA
* * * **
3732445 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-TGAACAGTTGC-GACAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG-AGGGTTGCAG-CAGCACATGCTG
* * * * *
3732508 GGCTCAAGCATGTGCTGGTGCCACATTTTTCTT-T-GTCGGAGCATCACTGGAGAACCTGACTGA
64 GGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCTCGCCGGAGCATCGCCGGAGAACCTGACCGA
* * *
3732571 C-AGCATTGGGGTTCCGAGGATCGGGGGGGCCGGGGGGTGTGCGCACATAATGTGCGATGGGTGC
129 CGA-CATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
3732635 TGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
193 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
3732700 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACGT
258 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AATGGGGACACTT
*
3732765 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGAATGCCAA
322 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
3732830 CAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAAACACCTT-CAAAAAAATTTTAAAAA
387 CAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
* *
3732894 ATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
452 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
3732959 TTCATGTTAAGGCTTCAAGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACGTA
517 TTCATGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
*
3733024 GAAATATGAAGATGTGCCTAAACCC-CCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCT
582 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
3733088 CTCTGGCCGGCATAGTGCCCGCCCGCTCG-CCTGCTCGTTTCGTCGGTTGGCTTAGGCATACAGA
647 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCC-GCTCGTTTTGTCGGTTGGCTTAGGCATACGGA
* * * * * * *
3733152 GTTCATTCCCAGTCTAAGATTAGACCAGACTGAAGGTTGCGGTAGCAAGATCAGCAGCACACAAA
711 GTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGC-ATAGCAGGATCGGCAGCACGCAGA
* * * *
3733217 GGGTGACCCGACCGAT-CCTCGACTTACGCGTCCCACCCCTCTGGTCGACTGAGCGCCCGCACGC
775 GGGGGACCCGACCGATCCCT-G-CTTGCGCGTCCCACCCCTCTGGCCGACTGAGCGCCCGTACGC
* * *
3733281 TTATTTCATGGGCTGACTTAGGGATATGGAGTTCATTCCCAGTCTAA
838 TCATTTCATGGGTTGACTT-GGGATACGGAGTTCATTCCCAGTCTAA
* * * *
3733328 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAGCAAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
* *
3733393 CTC-GAGCATGTGCTGGTGTCACATTTTTC-T-TCGCCGGAGCATCGTCGGAGAACCT
66 CTCAG-GCATGTGCTGGTGCCACATTTTTCTTCTCGCCGGAGCATCGCCGGAGAACCT
3733448 AACTGGCCGA
Statistics
Matches: 3871, Mismatches: 495, Indels: 318
0.83 0.11 0.07
Matches are distributed among these distances:
855 2 0.00
856 6 0.00
857 48 0.01
858 466 0.12
859 5 0.00
860 71 0.02
861 413 0.11
862 129 0.03
863 10 0.00
864 246 0.06
865 8 0.00
866 3 0.00
867 4 0.00
868 3 0.00
869 3 0.00
870 1 0.00
871 81 0.02
872 7 0.00
873 4 0.00
874 1 0.00
876 3 0.00
877 1 0.00
878 4 0.00
879 309 0.08
880 48 0.01
881 2 0.00
882 9 0.00
883 209 0.05
884 3 0.00
885 6 0.00
886 1 0.00
887 6 0.00
888 233 0.06
889 294 0.08
890 286 0.07
891 54 0.01
892 5 0.00
893 6 0.00
894 138 0.04
895 64 0.02
896 42 0.01
897 190 0.05
898 1 0.00
899 4 0.00
900 1 0.00
901 1 0.00
902 2 0.00
904 3 0.00
905 77 0.02
906 1 0.00
907 1 0.00
908 1 0.00
909 1 0.00
910 1 0.00
912 313 0.08
913 39 0.01
914 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (883 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCACATTTTTCTTCTCGCCGGAGCATCGCCGGAGAACCTGACCGACG
ACATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
TGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCATAGCAGGATCGGCAGCACGCAGAGGGGGA
CCCGACCGATCCCTGCTTGCGCGTCCCACCCCTCTGGCCGACTGAGCGCCCGTACGCTCATTTCA
TGGGTTGACTTGGGATACGGAGTTCATTCCCAGTCTAA
Found at i:3733560 original size:26 final size:26
Alignment explanation
Indices: 3733530--3733580 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3733520 TGACTTTAGG
*
3733530 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAATCTAAGC
3733556 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
3733581 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGC
Found at i:3733630 original size:226 final size:226
Alignment explanation
Indices: 3733228--3733652 Score: 636
Period size: 226 Copynumber: 1.9 Consensus size: 226
3733218 GGTGACCCGA
* * * *
3733228 CCGATCCTCGACTTACGCGTCCCACCCCTCTGGTCGACTGAGCGCCCGCACGCTTATTTCATGGG
1 CCGATCCCCGACTTACGCGTCCCACCCCTCTAGTCGACTGAGCGCCCGCACACTCATTTCATGGG
* *
3733293 CTGACTTAGGGATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
66 CTGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATC
* * *
3733358 GGATCGGAGCAAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCACATTTTTCT
131 GGACCGGACCAAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGCTGTCACATTTTTCT
3733423 TCGCCGGAGCATCGTCGGAGAACCTAACTGG
196 TCGCCGGAGCATCGTCGGAGAACCTAACTGG
* ** ** * *
3733454 CCGATCCCCGGCTTACGCGTCCCGTCCCTCTAGTCGGTTGAGTGCCCGCATACTCATTTCATGGG
1 CCGATCCCCGACTTACGCGTCCCACCCCTCTAGTCGACTGAGCGCCCGCACACTCATTTCATGGG
*
3733519 TTGACTTTA-GGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGAT
66 CTGAC-TTAGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGAT
** * * *
3733583 CGGACCGGACCAAGGGTTGTGGCAGCACATGCTGGGCTTGGGCATGTGCTGCTGTCGCATTTTTC
130 CGGACCGGACCAAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGCTGTCACATTTTTC
3733648 TTCGC
195 TTCGC
3733653 TAGGCCACCA
Statistics
Matches: 176, Mismatches: 22, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
226 173 0.98
227 3 0.02
ACGTcount: A:0.19, C:0.28, G:0.27, T:0.26
Consensus pattern (226 bp):
CCGATCCCCGACTTACGCGTCCCACCCCTCTAGTCGACTGAGCGCCCGCACACTCATTTCATGGG
CTGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATC
GGACCGGACCAAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGCTGTCACATTTTTCT
TCGCCGGAGCATCGTCGGAGAACCTAACTGG
Found at i:3734458 original size:26 final size:26
Alignment explanation
Indices: 3734424--3734473 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
3734414 ATGACTTAGG
3734424 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
*
3734450 CATATGGAGTTCATTCCCAGTCTA
1 CATACGGAGTTCATTCCCAGTCTA
3734474 TGATCGCACT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:3736321 original size:723 final size:714
Alignment explanation
Indices: 3734450--3736561 Score: 3078
Period size: 715 Copynumber: 2.9 Consensus size: 714
3734440 CCAGTCTAAA
* * * **
3734450 CATATGGAGTTCATTCCCAGTCTATGATCGCACTG-GACCGAGGGTTGCGATAGCACATGCTGGG
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGAC-GAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
3734514 CTCAGGCATGTGCTGGTGCAGCATTTATCTTGTCGGGGCACCATCGTCGGAGCATCGTCGAAGAA
65 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTGTCGGGGCACCATCCTCGGAGCATTGTCGGAGAA
* * *
3734579 CCTTACCGACGGCATTGCGGTT-TCGACGATCGGGGGGGCCAGGGGGTGTCGCACATGATGTGCG
130 CCTGACCGACGGCATTGGGGTTCTCGACGATCGGGGGGGCCAGGGGGTGGCGCACATGATGTGCG
* *
3734643 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAGACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
* *
3734708 CCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTACCCATTAAAGTGTCTGAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
3734773 GACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGAGC
325 GACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* ** *
3734837 ATGCGAACAAAAATACAAGGATCACATCTACC-TAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
390 ATGCCAACAAAAATACAAGGATCATGTCTACCAT-GTTTGGGGCCAAAACTCCTTCCG-AAAAAT
* *
3734901 TTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGC
453 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * * *
3734966 CATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGATTTTAAAAGCAATAAAAATGGTATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC-ATAAAAATGGCATT
* * * * *
3735031 GGCACGCAAAAATATGAATATGTGCCTAAACCCACCTACCACCCTATTGATCAACGGCTTGCGCA
582 GGCACACAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * * *
3735096 TCCCGTCTCTATGGCCGACGTAGTGCCCGTCCGCCCGCCCGCCCGCTTGTTTCTTCGATTGGCTT
647 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCACCCGCCCGCCCACTCGTTTCATCGATTGACTT
3735161 AGG
712 AGG
* *
3735164 CATACGGAGTTCAGT-CCAGTCTAAGATCGGA-AAGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACGA-GACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * * *
3735227 CTCAGGCATGTGCTGGTACCGTAATTTTCTTTGTC-GCGCACCATTGC-CGAAGCACTGCCAGAG
65 CTCAGGCATGTGCTGGTGCCGCATTTTTC-TTGTCGGGGCACCA-TCCTCGGAGCATTGTCGGAG
* * *
3735290 AACTTGACCGACAGCATTGGGGTTC-CGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
128 AACCTGACCGACGGCATTGGGGTTCTCGACGATCGGGGGGGCC-AGGGGGTG-GCGCACATGATG
*
3735354 TGCGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* *
3735419 ACACCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAA
256 ACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
3735484 TGGGGACACTTTTCTCAAATGGTCAAAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
3735549 GTGCATGCCAACAAAATTACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
386 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAA
*
3735614 CATTTTAAAAAATCTCGAACCGTAAAAA-TTTCAAAAATCGTGAAAAATTGAAAACGAGTCGTCT
451 -ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
3735678 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCATTAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCA-TAAAAATGGC
*
3735743 ATTGGCACACAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGT
579 ATTGGCACACAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
3735808 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCACCCACCCGTCCTGCCCACTCGTTTCATCG
644 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-T---CCACCCG-CCCGCCCACTCGTTTCATCG
*
3735873 GTTGACTTAGG
704 ATTGACTTAGG
* * **
3735884 TATACGGAGTTCATTCCCAGTCTAAGATCGGACGAGACCGAGGGTTGTGGCAGCACATTTTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACGAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* *
3735949 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAGCATCCTCGGAGCATTGTCGGAGAA
66 TCAGGCATGTGCTGGTGCCGCATTTTTCTT-GTCGGGGCACCATCCTCGGAGCATTGTCGGAGAA
* * * * *
3736014 CCTGACCGGCGGCATTGGGGTTCTAGGCGATCGAGGGGGCCAGGGGGTGCGCGCACATGATGTGT
130 CCTGACCGACGGCATTGGGGTTCTCGACGATCGGGGGGGCCAGGGGGTG-GCGCACATGATGTGC
* **
3736079 GATGGGTGCTGGTACTTGGCCCTCATATTGGCCTGCTATCCCTCATCAAACCTCAAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
*
3736144 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAT-CCAGTAGCCATTAAAGTGTTTGAAAT
259 -CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC-TGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
3736208 GGGGACACTTTTTTCAAATGGTCAGAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
3736273 TGCATGCCAACAAAAATA-AGAGGATCATGTCTGCCATGTTTTGGGCCAAAACTCCTTCCGAAAG
387 TGCATGCCAACAAAAATACA-AGGATCATGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAA-
*
3736337 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
450 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
3736402 GGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTAACAAGCCAGAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-CATAAAAATGGC
** * *
3736467 ATTGTTACACAAAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
579 ATTGGCACACAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
3736532 GCATCCCGTCTCTCTGGCCGGTGTAGTGCC
644 GCATCCCGTCTCTCTGGCCGGCGTAGTGCC
3736562 AGCCCGCCTA
Statistics
Matches: 1251, Mismatches: 119, Indels: 46
0.88 0.08 0.03
Matches are distributed among these distances:
713 119 0.10
714 27 0.02
715 329 0.26
716 131 0.10
719 6 0.00
720 40 0.03
721 72 0.06
722 124 0.10
723 216 0.17
724 185 0.15
725 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (714 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCGGACGAGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCAGGCATGTGCTGGTGCCGCATTTTTCTTGTCGGGGCACCATCCTCGGAGCATTGTCGGAGAAC
CTGACCGACGGCATTGGGGTTCTCGACGATCGGGGGGGCCAGGGGGTGGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAATTTT
AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCATAAAAATGGCATTGGCA
CACAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGGCGTAGTGCCCGTCCACCCGCCCGCCCACTCGTTTCATCGATTGACTTAGG
Found at i:3736784 original size:26 final size:26
Alignment explanation
Indices: 3736755--3736807 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3736745 GTTGACTTAG
3736755 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3736781 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3736807 G
1 G
3736808 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3737687 original size:26 final size:26
Alignment explanation
Indices: 3737651--3737703 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3737641 GTTGACTTAG
3737651 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
3737677 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
3737703 G
1 G
3737704 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:3738040 original size:894 final size:894
Alignment explanation
Indices: 3735885--3749774 Score: 12797
Period size: 894 Copynumber: 15.4 Consensus size: 894
3735875 TGACTTAGGT
* * **
3735885 ATACGGAGTTCATTCCCAGTCTAAGATCGGACGAGACCGAGGGTTGTGGCAGCACATTTTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * **
3735950 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAGCATCCTCGGAGCATTGTCGGAGAAC
66 C-GACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAAC
* * * * * * *
3736015 CTGACCGGCGGCATTGGGGTTCTAGGCGATCGAGGGGGCCAGGGGGTGCGCGCACATGATGTGTG
130 CTGACCGACGGCATTGGGGTTC-CGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* ** *
3736080 ATGGGTGCTGGTACTTGGCCCTCATATTGGCCTGCTATCCCTCATCAAACCTCAAGAACTCACAC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
3736145 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAT-CCAGTAGCCATTAAAGTGTTTGAAATG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC-TGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
3736209 GGGACACTTTTTTCAAATGGTCAGAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
3736274 GCATGCCAACAAAAATA-AGAGGATCATGTCTGCCATGTTTTGGGCCAAAACTCCTTCCGAAAGA
388 GCATGCCAACAAAAATACA-AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
3736338 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTG
452 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
3736403 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTAACAAGCCAGAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** ** * * *
3736468 TTGTTACACAAAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACG
582 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** * ** *
3736533 CATCCCGTCTCTCTGGCCGGTGTAGTGCCAGCCCGCCTACCCGCTCATTTCGTAAGTTGGCATAG
647 CATCCCGTCTCTCTGGCCGGCGTAGT--C-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * * *
3736598 GTATACAGAGTTCATTCCCAGTCTAAGATC-GAACTAAATCGA--GTTGAGGAAACAGGATTGGC
709 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACTAGACCGAGGGTTGCGGCAGCAGGATCGGC
** *** * * * * **
3736660 AGCACACAGAGGGGCACCCGATTGATCCCCAGCTTACGCATCCTGCCCCTCTGGCCAG-TCGAAT
773 AGCATGCAGAGGGG-ACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT-GAGC
* *
3736724 GCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
836 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * *
3736783 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACTTGCTGGGGT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * ** ** * **
3736848 CGGGCATGTGTTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCGGAGCGTCGCCGGAGAAC
66 C-GACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAAC
* * * * * *
3736913 TTGTCCGGA-GGTC-TTAGGGTCCCGACGATCAGGGGGGCCGAGGGGGGTGTGGGCACATGATGT
130 CTGACC-GACGG-CATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGT
* * * * *
3736976 CCGATGGGTGCGGGTACTTGTCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCAAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
3737041 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTCGCCATTAAAGTGTCTTAAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
3737106 TGGAGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
3737171 GTGCATGCGAAAAAAAATACAAGGATCACGTCTGCCAAG-TTGGGGTCCAAAACTCCTTTCGAAA
386 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CCAAAACTCCTTCCGAAA
* * * *
3737235 AAATTTTAACAAATCCCAAACCGTAAAAAGTTCCAAAAATCATGAAAAATAAAAAACGAGTCGTC
450 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
3737300 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
3737364 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCAATCCACGGCTTG
580 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
3737429 CGCATCCCATCTCTCTGGCCAGCGTAGT-ACCCGCCCGCCCACTCGTTCCGTTGGTTGGCTTAGG
645 CGCATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * **
3737493 CATACGGAGTTTATTCCCAGTCTAAGATCATACTAGACCAAGGGTTGCGGCAGCTA-GTTCGATA
710 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGC-AGGATCGGCA
* * *
3737557 GCATGCAGAGGTGGACCCGGCCGATCCCTGGCTTGCGCATCCCGGCCCTCTGGGCGGCTGAGCGC
774 GCATGCAGAGG-GGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
3737622 CCGCACGCTCATTTCGTGTGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAAGC
838 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * *
3737679 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCTAGGGTTGCGACAGCACATGCTAGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * *
3737744 CTACAATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGAAC
66 CGAC-ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAAC
* * *
3737809 CTGACCGACGGCATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGTGTACGCACATGATGTGCGA
130 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
3737874 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCACACC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
3737939 CCC-TAGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTATCCATTAAAGTGTCTGAAATGG
260 CCCTTA-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
3738003 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGGGTTTTTAGCTGAATTTTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
3738068 CATGCCAACAAAAATACAAGCATCACGTCTGCCAAGTTTGGGGCCATAACTCCTTCCAAAAAAAT
389 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* *
3738133 TTTAAAAAATCCCGAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
454 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * *
3738198 CATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTTCAAGCCATAGAAATGGCATT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** *
3738263 GGCACACAGCAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
584 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
*
3738328 TCCCGTCTCTCTGGCCGGCGTAATGCCGGTCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTT
649 TCCCGTCTCTCTGGCCGGCGT-A-----GT-CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * ** ** ***
3738393 AGGCATACAGAGTTCATTCCCAGTCTCAGATC-GAACTGGATTGAGGGTCACAAAAGCAGGATCG
707 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACTAGACCGAGGGTTGCGGCAGCAGGATCG
* * * * * *
3738457 GCAGCACGTAGAGGGGCACCCGGTCGATCCCCGACTTGAGCATCCTGCCCCTCTGGCCGGCTGAG
771 GCAGCATGCAGAGGGG-ACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * *
3738522 TGCCCGCACGCTCGTTACATGGGTTGACTTAGGCATAAGGAGTTCATTCCCAATCTAAG-
835 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* *
3738581 AT-C-G-G---------A-TC---GA----A-C---CC-AGGGTTACGGCAGCACATGTTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
*
3738621 CGGGA-ATGTGCTGGTG-C-CA---------------GCACCATCGTCGGAGCATCGTCGGAGAA
66 C--GACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAA
* * * * *
3738668 CCTGGCCGGCGGTATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGTGTGCGCACATGATGTGC-
129 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
3738732 AGTGGGTGCTGGTGCTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 A-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
3738797 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCCA-TAGCCATTAAAGTGTTTGAAAT
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTGAAAT
* *
3738861 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAAATTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * ** * *
3738926 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCACGTTTGGGGTGAAAAGTCCTTCTGAAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** *
3738991 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAAAACGAGTCGTCT
452 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT-AGAAAACGAGTCGTCT
* * * * *
3739056 TGCCATGAAACTTCACGTGAAGGCTTAACGAACCATTGCATGAATTTCCAAGCCATAAAACTGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** *
3739121 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
581 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * * *
3739186 GTTTCCCGTCTCTCTAGCTGGCGTAGTGCCCGCCCGTCCGCCCGCCCGCCCGCTCGTTTCGACGG
646 GCATCCCGTCTCTCTGGCCGGCGTA----------GT-CGCCCGCCCGCCCGCTCGTTTCGTCGG
* ** * * *
3739251 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCGGTA
700 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCA
* *** * * * * * *
3739316 GGATCGACAGCACATAGAGGGGGACCCGACCGATGCACGGCTTGCGGATCCTGCCCCTCTGGTCG
765 GGATCGGCAGCATGCAGA-GGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* **
3739381 GCTGAGCGCCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAG
829 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
3739446 C
894 C
* *
3739447 ATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCGGCAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * * *
3739512 CAGGCATGTGCTAGTGTCGTATTTTTCTTTG-CTGGGGCACCATCGTTGGAGCATCACCGGAGAA
66 C-GACATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCATCGGAGAA
* * * * * * *
3739576 CCTGGCTGGCGACATTAGGGTTCCGACGATCTGGGGGGCCGGGGGGGCTGTGCGCACATGATGTA
129 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGG-TGTGCGCACATGATGTG
* * *
3739641 CAATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACACAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
3739706 GCTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCTGTAGCCATTAAAGTGTCTTG-AA
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAA
* * *
3739770 TGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCAAGTTTGTAGCTGAATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** *
3739835 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCACCAAAACTCCTTCCAAAAA
386 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
3739900 AAGTTTAAAAAATCCCGAACGGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAATCGTCT
451 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * * *
3739965 TGCCATGAAACTGCACATGAAGGGTTACGAGACCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
3740030 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCAACCATCCTATCAATCCACGGCTTGC
581 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
3740095 GCATCCTGCCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTA
646 GCATCCCGTCTCTCTGGCCGGCGTAGT---CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * *
3740160 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGA--GTTGCGACAGCAGGATCGGC
708 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * *
3740223 AGCACGCAGAGGGGGACCCGGCTGATCTCCGACTTGTGCATCCCGCCCCTCTGGCCGGTTGAGCG
773 AGCATGCAGA-GGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* *
3740288 CCCGCACGCTCGTTTCGTGGGTTGATTTAGGCATACGGAGTTCAGTCCCAGTCTAAGCATATGGA
837 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---A
3740353 GTTCATTCCC
893 G--------C
* * *
3740363 AGTATAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGCACA
1 ---AT-A-C----GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACA
* * * *
3740428 TGCTGGGCTCGGGCACGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCA
57 TGCTGGGCTC-GACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCA
* * * * *
3740493 CCAGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGAGCCCGAGGGGGTGTGCGCACA
121 TCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACA
* *
3740558 TGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAG
185 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
3740623 AACTCACA-CCCC--------C--TTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGT
250 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * *
3740677 TTGGAATGGGGACAC-TTTTTCAAATGGCCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAAT
315 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* *
3740741 TTTTTTGTGCATGCCAA-ACAAAATACAAGGATCACGTCTACCCAGTTT-GGGCCAAAACTCTTT
380 TTTTTTGTGCATGCCAACA-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * *
3740804 CCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACAA
444 CCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* *
3740869 GTCGTCTTGCCATGAAACTTTACGTGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
509 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
3740934 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCAATCCAC
574 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * *
3740999 GGCTTGCGGATCCCGTCTCTCTGGCCGACCTAGTGCCCGCCCGCCCGTCCGCCCGCCTGCCCGCT
639 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT-------CG--C--CCG--C-CC-G--C-C-
*
3741064 CGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGA-TCAGA-C
685 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACC
* * * * *
3741127 GAAGGGTTACGGTAGCAGGATCGACAGCATGTAGAGGGGA--------A--CTCGGCTTGCGCAT
749 G-AGGGTTGCGGCAGCAGGATCGGCAGCATGCAGAGGGGACCCGGCCGATCCCCGGCTTGCGCAT
* * * **
3741182 CCCGCCCCTCTGGCCGACTAAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACTAAGT
813 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
*
3741247 TCATTCCCAATCTAAG-
878 TCATTCCCAGTCTAAGC
*
3741263 AT-C--AG---------A--C-----T-GGACC--A---AGGGTTGCGGCAGCATATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* ** **
3741303 CGGGCATGTGCTGGTAACGCATTTTTCTTCACCGGGGCACCATCGTC---G------C--AGAAC
66 C-GACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAAC
* * *
3741357 CTGA-CTAGCGACATTGGGGTTCC-AGCGATCAGGGGGGCCAGGGGGGTGTGCGCACATGATGTG
130 CTGACCGA-CGGCATTGGGGTTCCGA-CGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * *
3741420 CGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
3741485 ACCCCCGTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
3741550 GGGGAAACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCGATTTTTTTGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
3741615 TGCATGCCAACAAAAATACAAGGATCACATCTGCCAAGTTTGGAGCCAAAACTCCTTCCGAAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * *
3741680 ATATTAAAAAATCCTGAACTGTGAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCTTCTT
452 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
3741745 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCTATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
3741810 TTGGCATGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCA
582 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
3741875 CATCCCGTCTCTCTGGTCAGTGTAGTGCCTGCCCGCCAGCTCGCCCGCTCTTTTCGTCGGTTGGC
647 CATCCCGTCTCTCTGGCCGGCGTAGT--C-GCCCG-C--C-CGCCCGCTCGTTTCGTCGGTTGGC
* *
3741940 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TCAGATCGAGGGTTGTGGCAGCAGGAT
705 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACCGAGGGTTGCGGCAGCAGGAT
* * ** *
3742004 CGAG-AGCTTGCAGAGCGAGACCCGGTTGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCT
769 CG-GCAGCATGCAGAG-GGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
3742068 GAGCGTCCGCACGCTCGTTCCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
832 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * * * *
3742131 ATACGGAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGAGTTTCTGCAGCACATGCTGGGTT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * *
3742196 CGAGCATGGGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCACCGTCAGAGCATCATCGGAGAAC
66 CGA-CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAAC
* *
3742261 CTGACCAACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGC-CATGTTGTGCGA
130 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
3742325 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
3742390 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTTTAAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
3742455 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTTGTGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
3742520 ACGCCAACAAAAATATAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAAAATT
390 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* *
3742585 TTAAAAAATTCCGAACC-------G--T-AAAAA--A-G-----TAGAAAACGAGTTGTCTTGCC
455 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
3742632 ATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
520 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
3742697 GCATGCCA-AAATATGAAGATGTGCCTAAACCCACCTACCACCC-ATCGATCGACGGCTTGCGCA
585 GCATG-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
*
3742760 TCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCCAGCCCGCCTGCTCGTTTCGTCG
649 TCCCGTCTCTCTGGCCGGCGTAGT-------CGCCCG--C-CC-G--C-CC-GCTCGTTTCGTCG
* ** * * * *
3742825 ATTGGCTTAGGCATACGGAGTTCATTCTTAGTCTAAGATCAGAC-AGGACTGAAGGTTACGACAG
699 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTA-GACCGAGGGTTGCGGCAG
* ** * * * * *
3742889 CAGGATCGGCAACGCGTAGAGGGGGACCCGACCGATCCCCGACTTGCACATCCCGCCCCTTTGGC
763 CAGGATCGGCAGCATGCAGA-GGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * ** * * *
3742954 CGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGACGGTTGGCTTAGGCATACGAACTTCATTCCCAG
827 CGGC-T-GAG--CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
3743019 TCTAAGATC
888 TCTAAG--C
* * * * * * * ** * *** * *
3743028 AGACCGGA-CTGAGGGTTGCGACAG-C-AGGATTGGCAGCACGTAGAGGGGGACCCGATCGATC-
1 ATA-CGGAGTTCA---TT-C-CCAGTCTAAGATCGG-ACCA-G-ACCGAGGGTTGCG-GC-AGCA
* * * * * * * * *** * *
3743089 CACGGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGCACCCGTACGCTCGTTTCGTTGGTTG-AC
55 CA-TGC-TGGGC-T-C-G-ACATGTGCT-GG-T--GC-CGCAT-TTTTC--TTCGTCGG-GGCAC
* * * * * ** * * * *** * *
3743153 TTAAGCATACGGAG-TTTATTCCCAGTCTAAGCAT-ACGGA-GTTCATTCCCAG-T-CTATGATC
105 --CATCGT-CGGAGCATCA-TCGGAG---AA-CCTGACCGACG-GCATT-GGGGTTCCGACGATC
*** * * * * * * * * *
3743213 GGACCAGACCGAGGGTTGCGACAGCACATGCTG-G-GCTTGG-GCAT-GTGCTGGTGCCACATT-
160 GG-GGGGGCCGGGGGGTGTG-C-GCACATGATGTGCGATGGGTGC-TGGTACTTG-GCC-C-TTA
*** * * * * * * ** * ***
3743273 T-TTCTTCACCGAGGCACCATCACCGGAGCATCGC-CGGAGAACCTGATCGACGGCATTGGGGTT
218 TATTGGCCCCCTA-TC-CC-TCATC--A--AAC-CTC-GAGAA-CTCA-C-ACCCCCTTAAAG--
* ** * ***** ** * * * * * * *
3743336 CTGGCGATCGGGGGGGCCAGGGGGTGTGC-GCACATGATGTGCGA-T-AGGTG-CTGGTACT-TG
269 --AGC-ATTTGAGATTTTA-CAGGTTTGCTGC-CA-G-T-AGCCATTAAAGTGTCT-GAAATGGG
* * ** ** * ** ***
3743396 G-CCCTTATATTGGCCCCCTATCCCTCATC-AAACCTTGAGAACTGACAC-TC-CCTTAAAGAGC
325 GACACTT-T-TT----TCAAAT-GGTCA-CAAAATCTT--G---T-ACACTTCGAGTT-TTTAGC
* ** * * *
3743457 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTTTGA-AATGGGGA-CACTTTTT
375 ---TGA-ATTTT-----TTTG-TG-CA-T-GCCAACAAA---AAT-ACAA---GGATCACGTCTA
* * ** * * ** *** *** * * **
3743520 TCAA--ATGGTCCCAAAATCTTGTACATTTCG---AGTTTTTAGCTGAATTTTTTTGAGCATGCC
420 CCAAGTTTGGGGCCAAAA-C---T-CCTTCCGAAAAAATTTTA----AAAAATCCCGAAC-CGTA
** ** * * * *** * *
3743580 AAAA-----AAAAAT-AT-AAGGATCACGTCTACCAAGT-TTGGGGCCA-AAAATCCTTC-CGAA
475 AAAAGTTTCAAAAATCATGAAAAAT-A-G-AAAACGAGTCGTCTTGCCATGAAA--CTTCACG-T
* *** *** ** * *** * *
3743635 AAAATTTTAAAATATTCCGAACCGTAAAATG-TTTTGA-AAGTTGTGAAAAATAGAAAACGAGTC
534 GAAGGCTTAAGGGA--CC--ATTGT---ATGAATTT-ACAAGCCAT-AAAAAT-G---GC-A-TT
* * * * ** ** ** * *
3743698 GTCTTGCCATGAAAATTCACGTGAAGGCTTAAGGGACCATTGTA-TGAATTGACAAGCC-AT--A
584 GGCATG-CA-G-AAA-T-A--TGAA-G---ATGTG-CC--TAAACCCACCT-ACCACCCTATCGA
*** * * **** * ** * ** * ** * ** * *
3743759 AAAATGGCAATG-GCA-CGCC-AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTG-A
634 TCCACGGC-TTGCGCATC-CCGTCTCTCTG--GCCG-GCGTAGTCGC-CCGCCCGCCCGCTCGTT
** * ** ** * * ** * * **
3743820 TCCACGGCTT-GC--A--CATACCGTCTCTC-TGGCCGGTAT-AG-T--G-CCCGCCCGCTCGTT
693 TCGTCGG-TTGGCTTAGGCATACGGAGT-TCATTCCCAGTCTAAGATCAGACTAGACCG--AGGG
** ** ** *
3743874 TTGTCGGTTGGCTTAGGCATACGG-AGTTCATTCTCAGTCTAAGATTGGA-TGGGACCGAGGGTT
754 TTG-CGG-CAGC--AGG-AT-CGGCAG--CA---T--G-C--AGAGGGGACCCGG-CCGA---TC
* * *** * ***** * * * ** * * * * * **
3743937 ACAGTAGTACG-ATCGATAGCATGTAGAGGGGT-ACTCGGCCG-ATC-CCCGACTT-GTGCATCC
799 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA-GCGCCCGCA-CGCTCG-TTTCGTGGGT--
* * ** *** *
3743997 CGCCCCTCTGGCCGGCTGAGTGTCTGTACGCTTGTTTCGTGGGTGGACTTAGGCATACGGAGTTC
859 TG--ACTTAGGCATACGGAGT----------------------------------T-C--A-TTC
3744062 ATTCCTAGTCTAAGC
884 ---CC-AGTCTAAGC
* * * * ** * *
3744077 ATAAGGAGTTCAATCCCAATCTAAAATCGGACCAGACCGAGGGTTATGACAACACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC-
* * * * * *
3744142 TGGGCATGTGCTGGTGCCGCATTTTTCTTTG-CTAGGGCAGCATCGTCGGAGCATCACCGGAGAA
65 TCGACATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCATCGGAGAA
* * *
3744206 CCTGGCCGACGGCATTGGGGTTCCGACGATCTGGGGGGCACGGGGGGTGTGCGCACATGATGTGT
129 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTGC
* *
3744271 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACG
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
3744336 CTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AGAAT
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AAT
3744400 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTT-GCTGAATTTTTTT
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAATTTTTTT
* ** *
3744464 GTGCATGCCAACAAAAATACAAGGATCACGTCGACCAAGTTTGGCACCAAAAC-CCTTCCAAAAA
386 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
*
3744528 AAGTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA-AAAATCGAGTCGTC
451 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA-CGAGTCGTC
3744592 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
3744657 CATTGGCACGAAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATTGATCCACGGCTTG
580 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
3744722 TGCATCCCGTCTCTTTGGCCAGCATAGT-GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTATG
645 CGCATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* ** * *
3744786 CATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACAGAGGGTTGTGGCAGCAGGATCGGCAG
710 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
** * * * * *
3744851 CACACGGAGGGGGACCCGGCCGATCCTCGGCTTGCACATCCCACCCCTCTGGTCGGCTGAGCGCC
775 CATGCAGA-GGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* **
3744916 CGCACGCTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGC
839 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * * *
3744972 ATACGAAGTTCTTTCCCAGTCTAAAATCAGACCAGACCGAGGGTTACGGTAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * ** * **
3745037 CAAGCATGTGCTGGTGTCGCATTTTTCTTTG-CTGGGGTGCCATCGCCGGAGCATCGCCGGAGAA
66 CGA-CATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCATCGGAGAA
* *
3745101 CCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGTGTGCGCACACGATGTGCG
129 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
3745166 AT-GGT-CTTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACGTCGAGAACTCACA
194 ATGGGTGC-TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
3745229 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTTTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
3745294 GGGACACTTTTTCCAAAAT-GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
323 GGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * **
3745358 TGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAAATCCTTCCGAAATT
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * ** **
3745423 TTTTTTAAAAATCCTGAACCCCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
452 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
3745488 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGAA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*** * *
3745553 TTGGCACATAGAAATATGAAGATG-GCCTAAACCGACCTACCACCCTATCGATCCACGGCTTGTG
582 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
3745617 CATCCAGTCTCTCTAGCCGGCGTAGT-GCCCACCCACCCGCTCGTTTCGTCAGTTGGCATAGGCA
647 CATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * *
3745681 TACGGAGTTCATTCCCAGTCTAAGATTAGA-TCGGACCGAGGGTTGCGGCAGCAGGATCGACAGC
712 TACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * * *
3745745 -T-CATAGACGGTGACCCGACCGCTCCCC-GCTTGCGCATCCCGGCCCTCCGACCGGCTGAGCGC
776 ATGC--AGA-GGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
3745807 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
838 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * *
3745864 ATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * * *
3745929 CAGGCATTTGCTGGTGCCGCATTTTTCTTCGTCAGGGCGCCATCGCCGGAGCGTCACCGGAGAAC
66 C-GACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAAC
* * * *
3745994 CTGACCGGCGGCATTGGGGTTCCGACGAT---GGGGG-C-----GTGTGCACACATGATGTACTA
130 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* * *
3746050 TGGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTCACACC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
3746115 CCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTAAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
3746180 GACATTTTTTTCAAATGGTCACAAAATCTTGTGCACTTGGAGTTTTTAGCTGAATTTTTTTGTGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * *
3746245 ATGCCAACAAAAATACAAGGATCACATCTACCATGTTTGGGGCTAAAACACCTTCCAAAAAAATT
390 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* *
3746310 TTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCC
455 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
3746375 ACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
520 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
3746440 GCACGCAGAAATGTGAAGAAGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTGCGCAT
585 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
3746504 CCCGTCTCTCTGGCCGGCGCAGT-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAT
650 CCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
** * * *
3746568 GGAGTTCATTCCCAGTCTAAGATTGGAGC-AGACCGAGGATTGCAGCAGCACGATCGGCAGCATG
715 GGAGTTCATTCCCAGTCTAAGATCAGA-CTAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCATG
* * * * * *
3746632 TAAAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGTCGGCTAAGCGCCCGCA
779 CAGA-GGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * *
3746697 CGTTCGTTTCGTGGGTTGACTTAGGCTTACGAAGTTCATTCCCAGTCTGAGC
843 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * *** * * *
3746749 ATACAGAGTTCATTCCTAGTCTAAGATCAGATTGGGCCAAGGGTTGCGGTAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * *
3746814 C-ACGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCATCGGAGCATCGTCGGAGAA
66 CGA--CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAA
** * ** * **
3746878 CCTGACCGATAGTATTGGGGTTCCGGTGATCGGGGGGCCCGGGGGGTGTGTTCACATGATGTGCG
129 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
3746943 ATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAGAC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
3747008 CCCCTCAAATACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
3747073 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TCGAGTTTTTAGCTGAATTTTTTT-TG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
3747136 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
389 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
*
3747201 TTTAAAAAATCCCGAACGGTAAAAAGTTTCTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
454 TTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * * *
3747266 CCATGAAACTTCACGGGAACGCTTAAGGGACCATTGGATGAATTTACATGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
3747331 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGC
583 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* ** * * *
3747396 ATCCTGTCTCTCTGGATGGCATAGTGCCCGCCCGCCCGCCCGATCGCTCATTTCATCGGTTGGCT
648 ATCCCGTCTCTCTGGCCGGCGTAGT---CGCCCGCCCG-CC---CGCTCGTTTCGTCGGTTGGCT
** ** *
3747461 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAGTGAGGGTTGAGGCAGCAGGATCG
706 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATCG
* * * ** * * * * *
3747526 GTAGAATGCAGAGAGGGACCCGGTCGAT-CCCGAATTACGCATCCTGCCCCTTTGGTCGGTTGAG
771 GCAGCATGCAGAG-GGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* ** *
3747590 CGCCCGTACGCTCACTTCGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAAGC
835 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * * *
3747650 ATACAGAGTTCATTCCTAATCTAAGATCGGACCGGACCGAGGGTTGCAGTAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * *
3747715 CCAGCATGTGCTGGTGTCGCAATTTTCTTCGTCGAGGCACCATCGTCGGAGCATCA-CTGGAGAA
66 CGA-CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATC-GGAGAA
* ** * *
3747779 CCTGACTGACGGCATTGGGGTTCCGGTGACCGGGGGGG-CTGGGGGTGTGCGCACATGATGTGCG
129 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
3747843 ATTGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
3747908 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGGCTAAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
3747973 GGACATTTTTTTCAAATGGTCACAAAATCTTGTGCACTTGGAGTTTTTAGCTGAATTTTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * *
3748038 CATGCCAACAAAAATACAAGGATCACATCTACCATGTTTGGGGCTAAAACACCTTCC-AAAAAAA
389 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
3748102 TTT------T-----A----AAAAA---TC------C-TGAAAAATAGAAAACGAGTCGTCTTGC
454 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
3748142 CACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
3748207 GGCATGCAGAAATGTGAAGAGGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
584 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
*
3748272 TCCCGTCTCTCTGGCCGGCGCAGTGCCCGCCCGCCCGTCCGCCCGCCCGCCCGCTCGTTTCGTCG
649 TCCCGTCTCTCTGGCC-G-GC-GT-----------AGT-CGCCCGCCCGCCCGCTCGTTTCGTCG
* ** * * * *
3748337 GTTGGCTTAGGCATAAGGAGTTCATTCCCAGTCTAAGATTGGAGTAGACTGAGGATTGCAGCAGC
699 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGC
* * * * * * *
3748402 ACGATCGACAGCACAT-AAAAGGGGACCCGGTCGATCCCCGGCTTACGCATCCTGCCCCTCTGGC
764 AGGATCGGCAG--CATGCAGAGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * *
3748466 CGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTC
827 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
3748531 AGC
892 AGC
* * * * * *
3748534 ATACAGAGTTCATTCCTAGTCTAAGATCAGACCAG-CCAAGGGTTGCGGTAGCACATGTTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * *
3748598 CAGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCATCGGAGCATCGTCGGAGAAC
66 C-GACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAAC
* * ** *
3748663 CTGACCGACGGTATTGGAGTTCCGGTGATC-GGGGGGCCGGGGGGTGTGTGCACATGATGTGCGA
130 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* * *
3748727 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTCAGACC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
3748792 CCCTTAAAGACCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
3748857 GACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TCGAGTTTTTAGCTGAATTTTTTTTTGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* *
3748921 ATGTCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTCTGAAAAAATT
390 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
*
3748985 TTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
455 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
3749050 ATGAAACTTCACGAGAAGGTTTAAGGGACCATTGGATGAATTTACAAGCCATAAAAATGGCATTG
520 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
3749115 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
585 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* ** * * * *
3749180 CTCGTCTCTCTGGATGGCATAGTGCCCGTCCGCCCGCCCGATCGCTCATTTCATCGGTTGGCTTA
650 CCCGTCTCTCTGGCCGGCGTAGT---CGCCCGCCCG-CC---CGCTCGTTTCGTCGGTTGGCTTA
* ** * *
3749245 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGAATGAGGGTTGCGGCAGCAGGATTGGT
708 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * ** * * * *
3749310 AGCATACAGA-GGGACCCGGTCGATCCTCGGATTATGCATCCTGCCCCTCTGGTCGGTTGAGTGC
773 AGCATGCAGAGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
3749374 CCGTACGCTCATTTCGTTGGTTGACTTAGGCATACGGAGTTGATTCCCTA-TCTAAGC
838 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAGC
**
3749431 ATACAAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG-T-----------TGC--GG-T
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * *
3749481 AG-CATGTGCTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCGTCGGAGTATCATCGGAGAACC
66 CGACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACC
* ** * *
3749545 TGACAGACGGCATTGGGGTTCCGGTGACCGGGGGGGCTGGGGGGGTGTGCGCACATGATGTGCGA
131 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGA
* *
3749610 TTGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
3749675 CCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
3749740 GACACTTTTTTCAGATGGTCACAAAATCTTGTACA
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACA
3749775 GTATCACATC
Statistics
Matches: 10658, Mismatches: 1671, Indels: 1341
0.78 0.12 0.10
Matches are distributed among these distances:
854 3 0.00
855 116 0.01
856 92 0.01
857 7 0.00
858 1 0.00
859 3 0.00
860 362 0.03
861 163 0.02
862 1 0.00
863 3 0.00
864 2 0.00
865 192 0.02
866 125 0.01
867 172 0.02
868 221 0.02
869 3 0.00
871 7 0.00
872 1 0.00
875 163 0.02
876 3 0.00
877 37 0.00
878 4 0.00
879 4 0.00
880 1 0.00
881 87 0.01
882 97 0.01
883 618 0.06
884 764 0.07
885 224 0.02
886 13 0.00
887 21 0.00
888 15 0.00
889 12 0.00
890 10 0.00
891 153 0.01
892 327 0.03
893 590 0.06
894 824 0.08
895 318 0.03
896 257 0.02
897 161 0.02
898 241 0.02
899 560 0.05
900 189 0.02
901 339 0.03
902 424 0.04
903 196 0.02
904 41 0.00
905 11 0.00
906 5 0.00
907 165 0.02
908 62 0.01
909 161 0.02
910 287 0.03
911 219 0.02
912 95 0.01
913 52 0.00
914 2 0.00
915 8 0.00
916 2 0.00
917 10 0.00
918 77 0.01
919 10 0.00
920 10 0.00
921 2 0.00
922 11 0.00
923 31 0.00
924 95 0.01
925 152 0.01
926 14 0.00
927 63 0.01
928 5 0.00
929 25 0.00
931 3 0.00
932 5 0.00
933 3 0.00
934 1 0.00
935 6 0.00
937 9 0.00
939 7 0.00
940 29 0.00
941 21 0.00
942 16 0.00
943 5 0.00
944 3 0.00
946 3 0.00
947 9 0.00
948 12 0.00
949 18 0.00
950 11 0.00
951 12 0.00
952 23 0.00
953 20 0.00
954 4 0.00
955 7 0.00
956 13 0.00
957 1 0.00
958 6 0.00
959 1 0.00
960 3 0.00
961 4 0.00
962 3 0.00
963 6 0.00
964 1 0.00
965 9 0.00
968 12 0.00
969 12 0.00
970 21 0.00
971 3 0.00
972 9 0.00
973 11 0.00
974 13 0.00
975 1 0.00
976 15 0.00
977 21 0.00
978 13 0.00
979 6 0.00
980 17 0.00
981 1 0.00
983 8 0.00
984 1 0.00
985 2 0.00
986 3 0.00
987 8 0.00
988 8 0.00
989 16 0.00
991 2 0.00
992 9 0.00
993 7 0.00
994 2 0.00
995 14 0.00
996 19 0.00
997 12 0.00
998 7 0.00
999 5 0.00
1000 5 0.00
1001 17 0.00
1002 15 0.00
1003 2 0.00
1004 4 0.00
1005 10 0.00
1006 19 0.00
1007 18 0.00
1008 18 0.00
1009 20 0.00
1010 12 0.00
1011 5 0.00
1013 12 0.00
1014 13 0.00
1015 9 0.00
1016 18 0.00
1017 3 0.00
1019 1 0.00
1021 4 0.00
1022 16 0.00
1023 17 0.00
1024 251 0.02
1025 259 0.02
1026 225 0.02
1027 220 0.02
1028 207 0.02
1029 171 0.02
1030 263 0.02
1031 244 0.02
1032 233 0.02
1033 299 0.03
1034 156 0.01
1035 142 0.01
1036 184 0.02
1037 334 0.03
1038 222 0.02
1039 180 0.02
1040 656 0.06
1041 235 0.02
1042 165 0.02
1043 150 0.01
1044 101 0.01
1045 401 0.04
1046 213 0.02
1047 132 0.01
1048 675 0.06
1049 644 0.06
1050 136 0.01
1051 254 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
CGACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACC
TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCATGCA
GAGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
Found at i:3740354 original size:26 final size:26
Alignment explanation
Indices: 3740318--3740396 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
3740308 GTTGATTTAG
* *
3740318 GCATACGGAGTTCAGTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
3740344 GCATATGGAGTTCATTCCCAGTATAA
1 GCATATGGAGTTCATTCCCAGTCTAA
3740370 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
3740396 G
1 G
3740397 ATTGGACCGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:3742132 original size:26 final size:26
Alignment explanation
Indices: 3742103--3742155 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3742093 GTTGACTTAG
*
3742103 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3742129 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
3742155 G
1 G
3742156 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:3743074 original size:163 final size:163
Alignment explanation
Indices: 3742804--3743120 Score: 454
Period size: 163 Copynumber: 1.9 Consensus size: 163
3742794 CCGCCCGCCA
* * * * **
3742804 GCCCGCCTGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCTTAGTCTAAGATCAGAC
1 GCCCGCCCGCTCGTTTCGACGATTGGCTTAGGCATACGAACTTCATTCCCAGTCTAAGATCAGAC
* *
3742869 AGGACTGAAGGTTACGACAGCAGGATCGGCAACGCGTAGAGGGGGACCCGACCGATCCCCGACTT
66 AGGACTGAAGGTTACGACAGCAGGATCGGCAACACGTAGAGGGGGACCCGACCGATCCACGACTT
*
3742934 GCACATCCCGCCCCTTTGGCCGGCGTAGTGCCC
131 GCACATCCCGCCCCTCTGGCCGGCGTAGTGCCC
*
3742967 GCCCGCCCGCTCGTTTCGACGGTTGGCTTAGGCATACGAACTTCATTCCCAGTCTAAGATCAGAC
1 GCCCGCCCGCTCGTTTCGACGATTGGCTTAGGCATACGAACTTCATTCCCAGTCTAAGATCAGAC
* * * * * * *
3743032 CGGACTGAGGGTTGCGACAGCAGGATTGGCAGCACGTAGAGGGGGACCCGATCGATCCACGGCTT
66 AGGACTGAAGGTTACGACAGCAGGATCGGCAACACGTAGAGGGGGACCCGACCGATCCACGACTT
* * *
3743097 GCGCATCCTGCCCCTCTGGTCGGC
131 GCACATCCCGCCCCTCTGGCCGGC
3743121 TGAGCACCCG
Statistics
Matches: 134, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
163 134 1.00
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.21
Consensus pattern (163 bp):
GCCCGCCCGCTCGTTTCGACGATTGGCTTAGGCATACGAACTTCATTCCCAGTCTAAGATCAGAC
AGGACTGAAGGTTACGACAGCAGGATCGGCAACACGTAGAGGGGGACCCGACCGATCCACGACTT
GCACATCCCGCCCCTCTGGCCGGCGTAGTGCCC
Found at i:3743183 original size:26 final size:26
Alignment explanation
Indices: 3743154--3743207 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
3743144 TTGGTTGACT
*
3743154 TAAGCATACGGAGTTTATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
3743180 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
3743206 TA
1 TA
3743208 TGATCGGACC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:3744099 original size:26 final size:26
Alignment explanation
Indices: 3744049--3744100 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
3744039 GTGGACTTAG
* * * *
3744049 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATAAGGAGTTCAATCCCAATCTAA
3744075 GCATAAGGAGTTCAATCCCAATCTAA
1 GCATAAGGAGTTCAATCCCAATCTAA
3744101 AATCGGACCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATAAGGAGTTCAATCCCAATCTAA
Found at i:3744974 original size:26 final size:26
Alignment explanation
Indices: 3744944--3744995 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3744934 GTTGACTTAG
3744944 GCATATAG-AGTTCATTCCCAGTCTAA
1 GCATA-AGAAGTTCATTCCCAGTCTAA
* *
3744970 GCATACGAAGTTCTTTCCCAGTCTAA
1 GCATAAGAAGTTCATTCCCAGTCTAA
3744996 AATCAGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (26 bp):
GCATAAGAAGTTCATTCCCAGTCTAA
Found at i:3745872 original size:26 final size:26
Alignment explanation
Indices: 3745836--3745888 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3745826 GTTGACTTAG
3745836 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3745862 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3745888 G
1 G
3745889 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3746285 original size:884 final size:887
Alignment explanation
Indices: 3742921--3753561 Score: 11089
Period size: 893 Copynumber: 12.1 Consensus size: 887
3742911 GGGACCCGAC
* * * * * * * *
3742921 CGATCCCCGACTTGCACATCCCGCCCCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGA
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGT
* * *
3742986 CGGTTGGCTTAGGCATACGAACTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACA
66 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCA
* * * * * *
3743051 GCAGGATTGGCAGCACGTAGAGGGGGACCCGATCGATCCACGGCTTGCGCATCCTGCCCCTCTGG
131 GCAGGATCGGCAGCTCATAGA-GGGGACCCGGTCGATCC-CCGCTTGCGCATCCCGCCCCTCTGG
* * * * *
3743116 TCGGCTGAGCACCCGTACGCTCGTTTCGTTGGTTGACTTAAGCATACGGAGTTTATTCCCAGTCT
194 TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * **
3743181 AAGCATACGGAGTTCATTCCCAGTCTATGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTG
259 AAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTG
** * ** * ** *
3743246 GGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCACCGGAGCATCGCCGGA
324 GGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGA
* * *
3743311 GAACCTGATCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGT
389 GAACCTGACCGACGGCATTGGGGTTCCGACGAT--GGGGGGCC----GGTGTGCGCACATGATGT
* * *
3743376 GCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTGA
448 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
3743441 CACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTTTGAAA
513 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
* *
3743506 TGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTT
578 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
3743571 GAGCATGCCAAAAAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
643 GTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* * * * * **
3743636 AAATTTTAAAATATTCCGAACCGTAAAATGTTTTGAAAGTTGTGAAAAATAGAAAACGAGTCGTC
707 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
3743701 TTGCCATGAAAATTCACGTGAAGGCTTAAGGGACCATTGTATGAATTGACAAGCCATAAAAATGG
772 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
3743766 CAATGGCACGCCA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
837 CATTGGCACG-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * *
3743817 TGATCCACGGCTTGCACATACCGTCTCTCTGGCCGGTATAGT----GCCCGCCCGCTCGTTTTGT
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGT
* ** ** * * * *
3743878 CGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATTGGATGGGACCGAGGGTTACAGTA
66 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCA
* * ** * * * *
3743943 GTACGATCGATAGCAT-GTAGAGGGGTACTCGGCCGATCCCCGACTTGTGCATCCCGCCCCTCTG
131 GCAGGATCGGCAGC-TCATAGAGGGG-ACCCGGTCGATCCCCG-CTTGCGCATCCCGCCCCTCTG
* * * * * * * *
3744007 GCCGGCTGAGTGTCTGTACGCTTGTTTCGTGGGTGGACTTAGGCATACGGAGTTCATTCCTAGTC
193 GTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * ** ** *
3744072 TAAGCATA-AGGAGTTCAATCCCAATCTAAAATCGGACCAGACCGAGGGTTATGACAACACATGC
258 TAAGCATACA-GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGC
** * * *
3744136 TGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTTG-CTAGGGCAGCATCGTCGGAGCATCACC
322 TGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCACC
*
3744200 GGAGAACCTGGCCGACGGCATTGGGGTTCCGACGATCTGGGGGGCACGGGGGGTGTGCGCACATG
386 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGA--TGGGGGGC-C----GGTGTGCGCACATG
* *
3744265 ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAA
444 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
3744330 CTCACGCTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
509 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
3744395 AGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTT-GCTGAATT
574 AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAATT
* ** *
3744459 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCGACCAAGTTTGGCACC-AAAACCCTTCC
638 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC
* * *
3744523 AAAAAAAGTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA-AAAATCGAG
703 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAA-CGAG
3744587 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
767 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
3744652 AATGGCATTGGCACGAAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTAT
832 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * *
3744708 TGATCCACGGCTTGTGCATCCCGTCTCTTTGGCCAGCATAGTGCCCGCCCGCCCGCTCGTTTCAT
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGT
* * * *
3744773 CGGTTGGCTTATGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACAGAGGGTTGTGGCA
66 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCA
* ** * * * *
3744838 GCAGGATCGGCAGCACACGGAGGGGGACCCGGCCGATCCTCGGCTTGCACATCCCACCCCTCTGG
131 GCAGGATCGGCAGCTCATAGA-GGGGACCCGGTCGATCC-CCGCTTGCGCATCCCGCCCCTCTGG
* **
3744903 TCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCT
194 TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * *
3744968 AAGCATAC-GAAGTTCTTTCCCAGTCTAAAATCAGACCAGACCGAGGGTTACGGTAGCACATGCT
259 AAGCATACAG-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCT
* * * ** * *
3745032 GGGCTCAAGCATGTGCTGGTGTCGCATTTTTCTTTG-CTGGGGTGCCATCGCCGGAGCATCGCCG
323 GGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCACCG
*
3745096 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGTGTGCGCACACGAT
387 GAGAACCTGACCGACGGCATTGGGGTTCCGACGAT--GGGGGGCC----GGTGTGCGCACATGAT
* *
3745161 GTGCGAT-GGT-CTTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACGTCGAGAAC
446 GTGCGATGGGTGC-TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
3745224 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTTTG
510 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
*
3745289 AAATGGGGACACTTTTTCCAAAAT-GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
575 AAATGGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
*
3745353 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAAATCCTTCCG
639 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG
*** * * ** *
3745418 AAATTTTTTTTAAAAATCCTGAACCCCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTC
704 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTC
3745483 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
769 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * ** *
3745548 AGGAATTGGCACATAGAAATATGAAGATG-GCCTAAACCGACCTACCACCCTAT
834 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * * *
3745601 CGATCCACGGCTTGTGCATCCAGTCTCTCTAGCCGGCGTAGTGCCCACCCACCCGCTCGTTTCGT
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGT
* * * * *
3745666 CAGTTGGCATAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGCGGCA
66 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCA
* * ** * * * **
3745731 GCAGGATCGACAGCTCATAGACGGTGACCCGACCGCTCCCCGCTTGCGCATCCCGGCCCTCCGAC
131 GCAGGATCGGCAGCTCATAGA-GGGGACCCGGTCGATCCCCGCTTGCGCATCCCGCCCCTCTGGT
3745796 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
195 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
** * * *
3745861 AGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGCACATGCTGG
260 AGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGG
* * * * *
3745926 GCTCAGGCATTTGCTGGTGCCGCATTTTTCTTCGTCAGGGCGCCATCGCCGGAGCGTCACCGGAG
325 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* * * *
3745991 AACCTGACCGGCGGCATTGGGGTTCCGACGAT-GGGGG-C-GTGTGCACACATGATGTACTATGG
390 AACCTGACCGACGGCATTGGGGTTCCGACGATGGGGGGCCGGTGTGCGCACATGATGTGCGATGG
* * *
3746053 GTGCGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTCACACCCCC
455 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
3746118 TTAAAGAGCATTCGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTAAAATGGGGAC
520 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
* * *
3746183 ATTTTTTTCAAATGGTCACAAAATCTTGTGCACTTGGAGTTTTTAGCTGAATTTTTTTGTGCATG
585 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * *
3746248 CCAACAAAAATACAAGGATCACATCTACCATGTTTGGGGCTAAAACA-CCTTCCAAAAAAATTTT
650 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-ATCCTTCCGAAAAAATTTT
* *
3746312 AAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCAC
714 AAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
3746377 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
779 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
3746442 ACGCAGAAATGTGAAGAAGTGCCTAAA-CCACCTACCACCCTAT
844 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
**
3746485 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGCAGTGCCCGCCCGCCCGCTCGTTTCGT
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGT
* ** * * * * *
3746550 CGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGAGCAGACCGAGGATTGCAGCA
66 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCA
* * * *
3746615 GCACGATCGGCAGCAT-GTAAAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTG
131 GCAGGATCGGCAGC-TCATAGA-GGGGACCCGGTCGATCCCC-GCTTGCGCATCCCGCCCCTCTG
* * * *
3746679 GTCGGCTAAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCTTACGAAGTTCATTCCCAGTC
193 GTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * *** * *
3746744 TGAGCATACAGAGTTCATTCCTAGTCTAAGATCAGATTGGGCCAAGGGTTGCGGTAGCACATGCT
258 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCT
* * * * **
3746809 GGGCTCACGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCATCGGAGCATCGTCGG
323 GGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGG
** * ** **
3746874 AGAACCTGACCGATAGTATTGGGGTTCCGGTGATCGGGGGGCCCGGGGGGTGTGTTCACATGATG
388 AGAACCTGACCGACGGCATTGGGGTTCCGACGAT-GGGGGG-CC----GGTGTGCGCACATGATG
* *
3746939 TGCGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
447 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * * *
3747004 AGACCCCCTCAAATACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAA
512 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
3747069 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TCGAGTTTTTAGCTGAATTTTTT
577 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
3747133 T-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
642 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
*
3747197 AAATTTTAAAAAATCCCGAACGGTAAAAAGTTTCTAAAAATCATGAAAAATAGAAAACGAGTCGT
707 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTT-TAAAAATCATGAAAAATAGAAAACGAGTCGT
* * * *
3747262 CTTGCCATGAAACTTCACGGGAACGCTTAAGGGACCATTGGATGAATTTACATGCCATAAAAATG
771 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
3747327 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
836 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * **
3747379 CGATCCACAGCTTGCGCATCCTGTCTCTCTGGATGGCATAGTGCCCGCCCGCCCGCCCGATCGCT
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCG--C--TCG--
* *
3747444 CATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAGTGAGGG
60 --TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG
* * * * * * *
3747509 TTGAGGCAGCAGGATCGGTAGAATGCAGAGA-GGGACCCGGTCGAT-CCCGAATTACGCATCCTG
123 TTGCGGCAGCAGGATCGGCAG-CT-CATAGAGGGGACCCGGTCGATCCCCG-CTTGCGCATCCCG
* * * ** *
3747572 CCCCTTTGGTCGGTTGAGCGCCCGTACGCTCACTTCGTGGGTTGACTTAGGCATACGGAGTTGAT
185 CCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
3747637 TCCCAGTCTAAGCATACAGAGTTCATTCCTAATCTAAGATCGGACCGGACCGAGGGTTGCAGTAG
250 TCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAG
* * *
3747702 CACATGCTGGGCTCCA-GCATGTGCTGGTGTCGCAATTTTCTTCGTCGAGGCACCATCGTCGGAG
315 CACATGCTGGGCT-CAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* * ** * *
3747766 CATCACTGGAGAACCTGACTGACGGCATTGGGGTTCCGGTGACCGGGGGGGCTGGGGGTGTGCGC
379 CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA--TGGGGGGC---CGGTGTGCGC
* *
3747831 ACATGATGTGCGATTGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
439 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
3747896 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAG
504 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * * *
3747961 TGGCTAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTGCACTTGGAGTTTTTAGCTG
569 TGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * *
3748026 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCATGTTTGGGGCTAAAACA-C
634 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-ATC
*
3748090 CTTCCAAAAAAATTTTAAAAAAT-------C------------------C-TGAAAAATAGAAAA
698 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAA
*
3748129 CGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
763 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * *
3748194 TAAAAATGGCATTGGCATGCAGAAATGTGAAGAGGTGCCTAAACCCACCTACCACCCTAT
828 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
*
3748254 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGCAGTGCCCGCCCGCCCGTCCGCCCGCC
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-G-GCA-T-----------AGT--GCCCGCC
* ** ***
3748319 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAAGGAGTTCATTCCCAGTCTAAGATTGGAGTAG
50 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * * * * * *
3748384 ACTGAGGATTGCAGCAGCACGATCGACAGCACATAAAAGGGGACCCGGTCGATCCCCGGCTTACG
115 ACTGAGGGTTGCGGCAGCAGGATCGGCAGCTCAT-AGAGGGGACCCGGTCGATCCCC-GCTTGCG
* * * *
3748449 CATCCTGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA
178 CATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * *
3748514 AGTTCATTCCCAGTCTCAGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAG-CCAAGGGTT
243 AGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
* * *
3748578 GCGGTAGCACATGTTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCA
308 GCGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
** * * **
3748643 TCGGAGCATCGTCGGAGAACCTGACCGACGGTATTGGAGTTCCGGTGATCGGGGGGCCGGGGGGT
373 TCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT-GGGGGGCC----GGT
* *
3748708 GTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCA
433 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * * *
3748773 AACCTCAAGAACTCAGACCCCCTTAAAGACCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCA
498 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
3748838 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TCGAGTTTT
563 TTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* *
3748902 TAGCTGAATTTTTTTTTGCATGTCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-A
628 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * *
3748966 AAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATA
693 AAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATA
* * *
3749031 GAAAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGTTTAAGGGACCATTGGATGAATTTACA
758 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
*
3749096 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
823 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* **
3749161 CGATCCACGGCTTGCGCATCTCGTCTCTCTGGATGGCATAGTGCCCGTCCGCCCGCCCGATCGCT
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTG--C--CCGCCCG-CC---CGCT
* * * *
3749226 CATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGAATGAGGG
58 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG
* * * * * ** *
3749291 TTGCGGCAGCAGGATTGGTAG--CATACAGAGGGACCCGGTCGATCCTCGGATTATGCATCCTGC
123 TTGCGGCAGCAGGATCGGCAGCTCATAGAG-GGGACCCGGTCGATCC-CCGCTTGCGCATCCCGC
* * * * * *
3749354 CCCTCTGGTCGGTTGAGTGCCCGTACGCTCATTTCGTTGGTTGACTTAGGCATACGGAGTTGATT
186 CCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
*
3749419 CCCTA-TCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-----G-GGT--
251 CCC-AGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAG
* * *
3749475 ----TGC--GG-T-A-GCATGTGCTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCGTCGGAGT
315 CACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGC
* * ** **
3749531 ATCATCGGAGAACCTGACAGACGGCATTGGGGTTCCGGTGACCGGGGGGGCTGGGGGGGTGTGCG
380 ATCACCGGAGAACCTGACCGACGGCATTGGGGTTCC---GA-C-GATGGG--GGGCCGGTGTGCG
* *
3749596 CACATGATGTGCGATTGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
438 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
3749661 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCAATTAAA
503 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * ** *
3749726 GTGTCTAAAATGGGGACACTTTTTTCAGATGGTCACAAAATCTTGTACAGTATC-A-CATCTA--
568 GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGC
* * ** * * ** * * ***
3749787 AGAA-GTTTGCG-GCCAAAACT-CCTACTGAAAAAATTTAAAAAAATCTCG--AACCACAG-AAA
632 TGAATTTTTTTGTG-C---A-TGCCAAC---AAAAA--TACAAGGATCACGTCTACCA-AGTTTG
** * * *** * * * **** * **
3749846 GGTTCGAAAAT-CGT--GAAAAAA-AAGAAGAAGT--CG--TC-TTGCCA---TGAAACTTCATG
686 GGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATG
** * ** * * * * * *
3749899 -TGAA-GGCTTAAC-AGAC--CATTG-TATG-AA-TTTAC---AAGCCATAA---A--AATG---
751 AAAAATAG-AAAACGAGTCGTC-TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* ** * * * * * * ** ** *** * * * *
3749945 GCATTGGCACG-TAGAAATAT-G-A-AGACGTGC-CTAA-ACCCA-A-CTACC---ACCCTATCG
814 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC-ACCT
*
3749999 ATCCACGACT-T
878 A-CCAC-CCTAT
* * * * ** * * *
3750010 GCGCATCC-CGTC-T-CTC-TGGCCGACGTCT-T-GCC-GCCCA---CCCACCCGGCCACTCGTT
1 -CG-ATCCACGGCTTGCGCAT-CCCGTC-TCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTT
* * ** ** **
3750065 TCGTCAGTTGGCTTAGGCATACGGACTTCATTCCCAGTCTAAGATTGGACTAGACTGAGGGTTAT
62 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGC
* * * ** * *
3750130 GGTC-GCAGGATCGGTAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGAATCCCACCCC
127 GG-CAGCAGGATCGGCAGCTCATAGA-GGGGACCCGGTCGATCCCC-GCTTGCGCATCCCGCCCC
* * * * * *
3750194 ACTGGCCGGTTGAGCACCCGCACACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
189 TCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* **
3750259 AGT-T-----T--A-AG---A-T--C-G-----GAT-----TAGACCGAGGGTTGCGACAGCACA
254 AGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACA
* * ** *
3750298 TGCTGGGCTC-GAGCACGTTCTGGTGCCAG-ATTTTTCTTCACCGGGGCACCATCGCCGGAGCAT
319 TGCTGGGCTCAG-GCATGTGCTGGTGCC-GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT
** * * * ** *
3750361 CGTCGAAGAACCTGACCGACAGCATTGGGGTTCCGACGACCGGGGCGACTGGGGGGGTGTGCACA
382 CACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA---TGG-G---GGGCCGGTGTGCGCA
* * *
3750426 CATGATGTACGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
440 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
3750491 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGT
505 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
*
3750556 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAATCTTGTACACTTCGAGTTTTTAGCTG
570 GTCTAAAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * * * *
3750621 AATTGTTTTGTGCACGCCCACAAAAATACAAAGATCACGTCTACCAAGTTTGGCGCCAAAACTCC
634 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCC
* * * * *
3750686 TTCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTTAAAAATAGAAAAC
699 TTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAAC
* * *
3750751 GAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCACTGTATGAATTTACAAGCCAT
764 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*
3750816 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
829 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * *
3750875 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCTTCCACCCGCCCGGTCATT
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTG--C--CCGCCCGCCCGCTCGTT
* ** ** * * * *
3750940 TTGTCGGTTGGCTTAGAAATACGGAGTTCATT-CCAGTCTAAGATTGGACCGAACCGATGGTTGT
62 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGC
* ** * * * * *
3751004 GGCAACAATATCGGCAGCACGCAAAG-GGGGACCCGGCCGATCCCCGACTAGCACATCCCGCCCC
127 GGCAGCAGGATCGGCAG--CTCATAGAGGGGACCCGGTCGATCCCCG-CTTGCGCATCCCGCCCC
* *
3751068 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCC
189 TCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
*
3751133 AG--T---C-T--A-AG---A-T--C-G-----GATCGGACC-GA--GA--GTTGCGGCAGCACA
254 AGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACA
* * * * * ** **
3751172 TGCCGGGCTCGGGCATGTGCTGCTGCCACAATTTTCTTCGTCGGGGCACCATCGTTTGAGCATTG
319 TGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCA
* * * *
3751237 TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGTGAGCGCACAT
384 CCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT--GGGGGGCC----GGTGTGCGCACAT
* *
3751302 GATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGA
443 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
3751367 ACTCACACCCCCTTAAAGTGCATGTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
508 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
3751432 TGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTG-A--
573 TAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
3751494 ---------AT----------ATACAAGGAACACGTCTACCAAGTTTGGTGCCAAAACTCCTTCC
638 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC
* * *
3751540 AAAAAAATTTTAAAAAATCCCGAAAACC--AAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGA
703 GAAAAAATTTTAAAAAATCCCG--AACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGA
* *
3751603 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAACTTACAAG-C----
766 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
3751663 ------CA-T---A---A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
831 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * *
3751706 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTACCCGCCCGCTTGTT
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCG----CCCGCCCGCTCGTT
* * ** **
3751771 TCGTCGATTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAAACTGAGGGTTGC
62 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGC
* * * * * *
3751836 GGCAAG-AGGATTGGTAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCTCGCCCC
127 GGC-AGCAGGATCGGCAGCTCATAGA-GGGGACCCGGTCGATCCCC-GCTTGCGCATCCCGCCCC
* * * * *
3751900 TCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAGTCGC
189 TCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC-C
* * * * * * * *
3751965 TA-TCTATGCATACAGAGTTCATTCCCAGTCTAAGATCAGATC-GAACTGAGGGTGGCGGCAGTA
253 CAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGTAGCA
* * * * * * *
3752028 CATACTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCTTC-GGGCACCATCATTGGAGCAT
317 CATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT
* * * ** * *
3752092 CGCCAGAGAACCTGACCGGCGGCATTAAGGTTCCGATGATCGGGGGGGCCGAAGGGGGTGTGCAC
382 CACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT--GGGGGGCC------GGTGTGCGC
* * *
3752157 ACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGGCCCCTA-CCCTCATAAAACCTC
439 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * *
3752221 GAGAACTCACACCCCCTTATAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCTATTAAAG
504 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
3752286 TGTCTTAAATGGGGACGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTG
569 TGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * * *
3752351 ATTTTTTTTTTTGCATGCCAATAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTC
634 A-ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATC
* ** **
3752416 CTTCTGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAA
698 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAA
*
3752481 CGAGTCGTCTTGCCATGAAACTTCACGTGACGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
763 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * *
3752546 TAAAAATGGCATTGGCATGCAGAAATATGATGATGTGTCTAAACCTACCTACCACCCTAT
828 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* *** *
3752606 CGATCCACGGCTTGCGCATCCCTTCTCTCTGGCCGATGTAGTGCCCACCCGCTTGCCCGCCAGCT
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTG-----CC-C--GCCCGCCCGCT
* * ** * *
3752671 CGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACTGAGCG
58 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGG
* ** * * * ** ** ** *
3752736 TTGTGATAGCAAGATCGACAGCACGCAGAGGGAGACATGACCAATCCCCAGCTTGCGCATCCCGC
123 TTGCGGCAGCAGGATCGGCAGCTCATAGAGGG-GACCCGGTCGATCCCC-GCTTGCGCATCCCGC
* * *
3752801 CCCTCTGGCCGGCTAAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
186 CCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * * * * *
3752866 CCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGTGGCAGC
251 CCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGC
* * * * *
3752931 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCAGGGCACCATCGCCGGAGCA
316 ACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA
** * * * * *
3752996 TCGTCGGAGAACCTAACCGGCGACATTGGGCTTCCGGCGATCGGGGGGCCGGGGGGGGTGTGCGC
381 TCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT-GGGGGGCC------GGTGTGCGC
*
3753061 ACATGATGTGTGATGGGTGCTGGTACTTGG-CCTTAATATTGGCCCCCTATCCCTCATCAAACCT
439 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT-ATATTGGCCCCCTATCCCTCATCAAACCT
* * * *
3753125 CGAGAACTCACACCCCCTTGAAGAGGCATTTTGAGATTTTACAGGTTTGCTCCCAATACCCATTA
503 CGAGAACTCACACCCCCTTAAAGA-GCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * ** * *
3753190 AAGTGTTTTGAAATGGGGATGC-TTTTTCGAATGGTCACAAAATC-TGTACACTTTGAGTTTTTA
566 AAGTG-TCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * *
3753253 GCTGATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAA
630 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * ** * * *
3753318 CTCCTTCCGAAAAAATTTAAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCCT-AAAAATAAA
695 ATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGA
* * * * *
3753382 AAATGAATCGT-TTGCCATGAAACTTCACGTG-ACGCTTAATGGACCATTGTATTAA-TTACAAG
760 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * * * * * *
3753444 CCAT-CAAATGGCATTGGAACACAAAAATATGAAGATGTGCCTAAGCCTAGCTACCACCCTAT
825 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * *
3753506 CGATCCACGGCTTGCGCATCCTGTCTCTCTGGTCGACGTAGTGCCCGCCCGTCCGC
1 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGC
3753562 CCGCCCGCCC
Statistics
Matches: 8253, Mismatches: 1110, Indels: 768
0.81 0.11 0.08
Matches are distributed among these distances:
811 7 0.00
816 4 0.00
817 1 0.00
821 1 0.00
822 1 0.00
823 4 0.00
824 2 0.00
825 15 0.00
826 6 0.00
827 18 0.00
828 250 0.03
829 18 0.00
830 19 0.00
831 124 0.02
832 133 0.02
833 9 0.00
834 2 0.00
835 78 0.01
836 6 0.00
837 87 0.01
838 4 0.00
839 14 0.00
840 6 0.00
841 7 0.00
842 3 0.00
843 4 0.00
844 3 0.00
845 5 0.00
846 3 0.00
847 7 0.00
848 16 0.00
849 10 0.00
850 157 0.02
851 6 0.00
852 6 0.00
853 13 0.00
854 6 0.00
855 1 0.00
856 10 0.00
857 73 0.01
858 189 0.02
859 56 0.01
860 6 0.00
861 5 0.00
862 2 0.00
863 6 0.00
864 10 0.00
865 9 0.00
866 16 0.00
867 8 0.00
868 3 0.00
869 7 0.00
870 2 0.00
871 7 0.00
872 33 0.00
873 173 0.02
874 241 0.03
875 212 0.03
876 8 0.00
877 3 0.00
878 5 0.00
879 5 0.00
880 5 0.00
881 256 0.03
882 79 0.01
883 574 0.07
884 652 0.08
885 230 0.03
886 17 0.00
887 18 0.00
888 10 0.00
889 9 0.00
890 5 0.00
891 230 0.03
892 679 0.08
893 736 0.09
894 421 0.05
895 327 0.04
896 46 0.01
897 129 0.02
898 8 0.00
899 77 0.01
900 337 0.04
901 249 0.03
902 185 0.02
903 32 0.00
904 340 0.04
905 194 0.02
906 28 0.00
907 221 0.03
908 14 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (887 bp):
CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGT
CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCA
GCAGGATCGGCAGCTCATAGAGGGGACCCGGTCGATCCCCGCTTGCGCATCCCGCCCCTCTGGTC
GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATGGGGGGCCGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAA
AAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
Found at i:3747651 original size:26 final size:26
Alignment explanation
Indices: 3747622--3747674 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3747612 GTTGACTTAG
* * *
3747622 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
3747648 GCATACAGAGTTCATTCCTAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
3747674 G
1 G
3747675 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:3748305 original size:4 final size:4
Alignment explanation
Indices: 3748296--3748325 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
3748286 CCGGCGCAGT
*
3748296 GCCC GCCC GCCC GTCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
3748326 TCGTTTCGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.70, G:0.27, T:0.03
Consensus pattern (4 bp):
GCCC
Found at i:3748543 original size:26 final size:26
Alignment explanation
Indices: 3748506--3748555 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
3748496 GTTGACTTAG
3748506 GCATACGAAGTTCATTCCCAGTCTCA
1 GCATACGAAGTTCATTCCCAGTCTCA
*
3748532 GCATAC-AGAGTTCATTCCTAGTCT
1 GCATACGA-AGTTCATTCCCAGTCT
3748556 AAGATCAGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTCA
Found at i:3752886 original size:26 final size:26
Alignment explanation
Indices: 3752850--3752902 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3752840 GTTGACTTAG
*
3752850 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3752876 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3752902 G
1 G
3752903 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3754501 original size:26 final size:26
Alignment explanation
Indices: 3754465--3754517 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3754455 GTTGACTTAG
*
3754465 GCATACTGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
3754491 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
3754517 G
1 G
3754518 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:3755623 original size:875 final size:871
Alignment explanation
Indices: 3753567--3757775 Score: 4934
Period size: 874 Copynumber: 4.8 Consensus size: 871
3753557 TCCGCCCGCC
* * * * * * * *
3753567 CGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCAGACGGAGTTGATTCCCAGTCTAAGATCAGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * * * * *
3753632 CCAGAT-CGAGGGTTACAGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATCTTTCGTG
66 GCAG-TCCAAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * ** * ** * * *
3753696 TCCAGGGCACTATCGTCGGAGCATCACCGGAGAACCTGGCCGATAGCATT-GTGTTTCGACGATC
130 ACCGGGGCAC-ATC-ACGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC
* * * *
3753760 GGGGGGGCC--GGGGGGTGTGCGCACATGATTTGTGATTGGTGCTGGTAGTTGGCCCTTATATTG
193 -GGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * *
3753823 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGATATTTTATAG
257 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
3753888 GTTTGCTGCCAGTACCCATTAAAGTGTCTGAAATGGGGACACTTTTATCAAATGGTCACAAAATC
322 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
3753953 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTC
387 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTC
* * *
3754018 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAATCTCGAACCGCAAAAGGTTTC
452 TACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTAAAAAATCCCGAACCGCAAAAAGTTTC
* * *
3754083 AAAAATCATGAAAAATAGAAAATGAGTTGCCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
517 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
**
3754148 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTATCTAAA
582 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
*
3754213 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGACGTAGTGCCCGC
647 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
* * * * *
3754278 CCGCCTG----CTCGTTTCATCGGTTAGCTTAGGCATACGGAGTTCATTCCTAGTTTAAGATCAG
712 CCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAG
* * ** * *
3754339 TCCAGAT-AGAA-GGTTGCGGCAGCAGGATCGACAGCTCACA-AAGGGGGCCCCGATCGATCCCC
777 ACCAGATCA-AAGGGTTGCGGCAGCAAGATCGGTAGAT-ACAGAA-GGGGACCCGATCGATCCCC
* * * *
3754401 GTCTTACGCATCCCGTCCCTTTGGCCGGCTGAG
839 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
3754434 C-ACCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACTGAGTTCATTCCTAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAG-AT-CG
* *
3754498 GAGTTCATTCCTAGTCTAAGATTGGATCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCAAGC
64 GAG-------C-AGTC-----------C--A---AGGGTTGCGGCAGCACATGCTGGGCTCAGGC
** *
3754563 ATGTGCCAGTGCCGCATTTTTCTTCGCCGGGG-----CAC----CATCGTCGGAGAACCTGACCG
105 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACATCACGGAGCATCGTCGGAGAACCTGACCG
* * *
3754619 ACGACATTGGGGTTCCGGCGAT----------TGGGGGGTGTGCGCACATGATGTGCGATGTGTG
170 ACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
3754674 CTGGTACTTGGCCCTTATATTGGCTCCCTATCACTCATCAAACCTCGAGAACTCACACCCCCTTA
235 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
3754739 AAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
300 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * *
3754804 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTCGCTGATTTTTTTTATGCATGCCA
365 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* **
3754869 ACAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAAATCCTTCTAAAAAAAGTTTAAAA
430 ACAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAA-TTTAAAA
** * *
3754934 AATCCCGAACCGCAAAAAAGTTAAAAAAATCGTGAAAAATAGAAAACGAATCGTCTTGCCATGAA
494 AATCCCGAACCGC-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
3754999 ACTTCACGTGAAGGCTTAAGGGA-CATTGTGTGAATTTACAAGCCATAAAAATGACATTGGCATG
558 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
*
3755063 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCACCCCGT
623 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
3755128 CTCTCTGGCCGGCATAGAGCCCGCCCGCCCGCCCACTCGTTTCCTCGGTTGGCTTAGGCATACGG
688 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACAG
** * * * * **
3755193 AGTTCATTCCCAGTCTAAGATTGGACCGGATC-AAGGGTTGCGGCAGTAGGATCGGCAAGATGTA
753 AGTTCATTCCCAGTCTAAGATCAGACCAGATCAAAGGGTTGCGGCAGCAAGATCGG-TAGATACA
3755257 GAAGGGGACCCGA-CTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
817 GAAGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
3755312 CGCCCGCACGCTCGTTTCGTGGTTTGACTTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * *
3755377 GCAGTCCAAGGGTTGCGGCAGCACATGTTGGGCTCAGGCATGTGCCGGTGCCTCATTTTTCTTCA
66 GCAGTCCAAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCA
*
3755442 CCGGGGCACCATCACAGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCG
131 CCGGGGCA-CATCAC-GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCG
*
3755507 GGGGGCCGGGGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAAATTGG
194 GGGGGCCGGGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * *
3755572 CCCCCTATCCCTCATCAATCCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGG
258 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
3755637 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
323 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
*
3755702 TGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCT
388 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCT
* *
3755767 ACCAAGTTTGGGACCAAAACTCCTGCCGAAAAAATTTAAAAAATCCCGAACCACAAAAAGTTTCA
453 ACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTAAAAAATCCCGAACCGCAAAAAGTTTCA
* * * * *
3755832 AAAATCTTGAAAAATACAAAAGGACTCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACC
518 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
** *
3755897 ATTGTATGAATTTACAAGTGATAAAAATGGCATTGGCATGCAGAAATATCAAGATGTGCCTAAAC
583 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* *
3755962 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCC
648 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
* * * * * * *
3756027 CGCCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATACAGAGTTCATTCCTAGTCCAAGAT-TGA
713 CGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAG-
** * * * * *
3756091 ACCAGA-CTGAGGGTTGCAGCAGCAAGATCGGTAGCACACAGAGGGGGCCCCGATCGATCCCCGT
777 ACCAGATCAAAGGGTTGCGGCAGCAAGATCGGTAG-ATACAGAAGGGGACCCGATCGATCCCCGG
*
3756155 CTTGCGCATCCCGCCCCTATGGCCGGCTGAG
841 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
3756186 CGCCCGCACGCTCATTTCATGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-
* *
3756251 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGGGGCAGCACATGCTGGGCTCGGGC
63 G-G---------AG-C--AG-TC----C--A---AGGGTTGCGGCAGCACATGCTGGGCTCAGGC
* * *
3756316 ATGTGCTGGTGCCACATTTTTCTT---C---G-----C-CGGAGCATTGTCGGAGAACCTAACCG
105 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACATCACGGAGCATCGTCGGAGAACCTGACCG
* ** *
3756369 GCGGCATTGGGG-TCACGGCGATCGGGGGG--GCAGGGGGTGTGCGCACATGATGTGCCATGGGT
170 ACGGCATTGGGGTTC-CGGCGATCGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
3756431 GCTCGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
234 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
3756496 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGAAATAGGGACAC
299 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
3756561 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGATTTTTTTTGTGCATGCC
364 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* **
3756626 AA-AAAAATACAAGGATCATGTCTACCAAGTTTGGGTCCAAAACTTTTTCCGAAAAAATTTTAAA
429 AACAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAA-TTTAAA
* * * ** * * * *
3756690 AAGTCTCGAACCTCAAAAAGTTTTGAAAATCGTTAAAAATAGAAAATGAGTCGTCTTGGCATGAA
493 AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* **
3756755 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGCATTGGCACA
558 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
3756820 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCAT
623 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * *
3756885 CTTTTTGGCCGACGTAGTGCCCGCCCGCTCGCCCACCCGTTCGTTTCATCGGTTGG-TTGAGTCA
688 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCA--C--TCGTTTCATCGGTTGGCTT-AGGCA
* * * * ** * *
3756949 TACAGAGTTTATTCCCAGTCTAAGATCAGATC-GAACAAAGGGCTGATGTATCAAGATCGGTAG-
748 TACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAAGGGTTGCGGCAGCAAGATCGGTAGA
* * * * * *
3757012 TCATAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCTG-CCCTCTAGCCGGCTGAG
813 T-ACAGAAGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
*
3757071 CTCCCGCACGCTCGTTTCGTGGGTTCAGTTAGGCAAACAGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGT-GG----GTT-----------G---A----C--T-TAAGCATACG
* * * * * * *
3757136 GAGTTCATTCCCATTCTAAGATCGGATCAGACCAAAGGTTACGGCAGCACTTGCTAGGCTC-GAG
40 GAGTTCATTCCCAGTCTAAGATCGGAGCAGTCCAAGGGTTGCGGCAGCACATGCTGGGCTCAG-G
* * * * *
3757200 CATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGA
104 CATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCA-CATC-ACGGAGCATCGTCGGAGAACCTGA
* * *
3757265 CCGGCGGCATTGGGGTTCCGGCGATCGGGGTGGCCGGGGGGGGTGTGCACACATGATGTGTGATG
167 CCGACGGCATTGGGGTTCCGGCGATCGGGG-GGCCGGGGGGGGTGTGCGCACATGATGTGCGATG
* * *
3757330 GGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCTTCAAACCTCAAGAACTCACACCCC
231 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
3757395 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAACTGTCTTAAATGGGGA
296 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
3757460 CACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCAT
361 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
3757525 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-CCAAAACTCCTT---------TTGA
426 GCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTA
* * * *
3757580 AAAAATCCTGAACCGCAAAAAGTTTCGAAAGTCATGAAAAATAGAAAACGAGTCGTCTTGCCATC
491 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
3757645 AAACATCACGTGAAGGCTTAAGGGGCCATTGTATGAGTTTACAAGCCATAAAAATGGCATTGGCA
556 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
3757710 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
621 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
3757775 G
686 G
3757776 CCAGCATAGT
Statistics
Matches: 2886, Mismatches: 306, Indels: 275
0.83 0.09 0.08
Matches are distributed among these distances:
853 57 0.02
856 1 0.00
858 1 0.00
859 3 0.00
864 41 0.01
866 48 0.02
867 3 0.00
868 3 0.00
869 4 0.00
870 1 0.00
873 333 0.12
874 474 0.16
875 333 0.12
876 3 0.00
877 9 0.00
878 121 0.04
879 56 0.02
881 23 0.01
882 61 0.02
883 424 0.15
884 5 0.00
885 82 0.03
886 88 0.03
887 67 0.02
888 5 0.00
890 6 0.00
891 3 0.00
892 231 0.08
894 2 0.00
895 3 0.00
897 4 0.00
898 1 0.00
899 46 0.02
900 54 0.02
901 1 0.00
902 221 0.08
903 32 0.01
904 1 0.00
907 1 0.00
908 2 0.00
909 1 0.00
910 3 0.00
911 28 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (871 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
GCAGTCCAAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCA
CCGGGGCACATCACGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGG
GGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACC
AAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
CCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCA
GATCAAAGGGTTGCGGCAGCAAGATCGGTAGATACAGAAGGGGACCCGATCGATCCCCGGCTTGC
GCATCCCGCCCCTCTGGCCGGCTGAG
Found at i:3756245 original size:26 final size:26
Alignment explanation
Indices: 3756215--3756270 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
3756205 TGGGTTGACT
3756215 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
*
3756241 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
3756267 TAAG
1 TAAG
3756271 ATCGGATCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:3756763 original size:883 final size:883
Alignment explanation
Indices: 3755341--3757774 Score: 3314
Period size: 883 Copynumber: 2.7 Consensus size: 883
3755331 TGGTTTGACT
* * * *
3755341 TAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGAGCAGTCCAAGGGTTGCGGCAGCACATGTT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCACATGCT
* * *
3755406 GGGCTCAGGCATGTGCCGGTGCCTCATTTTTCTTCACCGGGGCACCATCACAGGAGCATCGTCGG
66 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT---C--GG---C--CAC-GGAGCATCGTCGG
* *
3755471 AGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGTGGTGTGCGCACATGA
120 AGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG-CGGGGGG-GGTGTGCGCACATGA
* *
3755536 TGTGCGATGGGTGCTGGTACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAATCCTCAAGAAC
183 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
*
3755601 TCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
248 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
3755666 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTT
313 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
*
3755731 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCCTGCCGA
378 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGG-CCAAAACT--TTCCGA
* * * *
3755796 AAAAA-TTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCTTGAAAAATACAAAAGGACTCG
440 AAAAATTTTAAAAAAT-CCGAACCACAAAAAGTTTCGAAAATCTT-AAAAATAGAAAACGAGTCG
*
3755860 TCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTGATAAAAAT
503 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGT-ATAAAAAT
*
3755925 GGCATTGGCATGCAGAAATATCAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
567 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
3755990 TGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCG-C-C-CGCCCGCCCGCTCATTTCGTCGATT
632 TGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCGCTCGCCCACCCGCTCATTTCATCGATT
* * ** *
3756052 GGCTT-AGGCATACAGAGTTCATTCCTAGTCCAAGAT-TGAACCAGACTGAGGGTTGCA-GCAGC
697 GG-TTGAGGCATACAGAGTTCATTCCCAGTCCAAGATCAGAACCA-ACAAAGGGCTG-ATGCAGC
* *
3756114 AAGATCGGTAGCACACAGAGGGGGCCCCGATCGATCCCC-GTCTTGCGCATCCCGCCC-CTATGG
759 AAGATCGGTAG-ACACAGAGGGGGACCCGACCGATCCCCAG-CTTGCGCATCCCGCCCTCTA--G
* *
3756177 CCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTC
820 CCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTCACTTAAGCAAACAGAGTTCATTCCCAGTC
* * *
3756241 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGGGGCAGCACATGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCACATGCT
* *
3756306 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC-G-C-CGGAGCATTGTCGGAGAACCTAACC
66 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGGCCACGGAGCATCGTCGGAGAACCTGACC
** *
3756368 GGCGGCATTGGGG-TCACGGCGATCGGGGGG-GCAGGGGGTGTGCGCACATGATGTGCCATGGGT
131 GGCGGCATTGGGGTTC-CGGCGATCGGGGGGCGGGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
3756431 GCTCGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
* *
3756496 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGAAATAGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
3756561 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGATTTTTTTTGTGCATGCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
3756626 AA-AAAAATACAAGGATCATGTCTACCAAGTTTGGGTCCAAAACTTTTTCCGAAAAAATTTTAAA
390 AACAAAAATACAAGGATCATGTCTACCAAGTTTGGG-CCAAAAC--TTTCCGAAAAAATTTTAAA
* * * * *
3756690 AAGTCTCGAACCTCAAAAAGTTTTGAAAATCGTTAAAAATAGAAAATGAGTCGTCTTGGCATGAA
452 AAATC-CGAACCACAAAAAGTTTCGAAAATC-TTAAAAATAGAAAACGAGTCGTCTTGCCATGAA
**
3756755 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGCATTGGCACA
515 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-TATAAAAATGGCATTGGCATG
* *
3756820 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCAT
579 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCAT
* * * * * *
3756885 CTTTTTGGCCGACGTAGTGCCCGCCCGCTCGCCCACCCGTTCGTTTCATCGGTTGGTTGAGTCAT
644 CTCTCTGGCCGACGTAGTGCCCG-CCGCTCGCCCACCCGCTCATTTCATCGATTGGTTGAGGCAT
* * * * * * *
3756950 ACAGAGTTTATTCCCAGTCTAAGATCAGATCGAACAAAGGGCTGATGTATCAAGATCGGTAGTCA
708 ACAGAGTTCATTCCCAGTCCAAGATCAGAACCAACAAAGGGCTGATGCAGCAAGATCGGTAGACA
* * *
3757015 TAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCTGCCCTCTAGCCGGCTGAGCTCCCGCAC
773 CAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCTCTAGCCGGCTGAGCGCCCGCAC
* * * *
3757080 GCTCGTTTCGTGGGTTCAGTTAGGCAAACAGAGTTCATTCCCAGTC
838 GCTCATTTCATGGGTTCACTTAAGCAAACAGAGTTCATTCCCAGTC
* * * *
3757126 TAAGCATACGGAGTTCATTCCCATTCTAAGATCGGATCAGACCAAAGGTTACGGCAGCACTTGCT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCACATGCT
* * ** *
3757191 AGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCGCCGG
66 GGGCTCGGGCATGTGCTGGTGCCACATTTTTC-T--TC--GG--CCA-CG---GAGCATCGTCGG
*
3757256 AGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGTGGCCGGGGGGGGTGTGCACACATGA
120 AGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGG-GG-CGGGGGGGGTGTGCGCACATGA
* * *
3757321 TGTGTGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCTTCAAACCTCAAGAAC
183 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
* * *
3757386 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAACTGTCTT
248 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
3757451 AAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTAAATTTT
313 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
*
3757516 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAC--TCC-----
378 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCAAAACTTTCCGAAAA
* * *
3757574 --TTTTGAAAAAATCCTGAACCGCAAAAAGTTTCGAAAGTCATGAAAAATAGAAAACGAGTCGTC
443 AATTTT-AAAAAATCC-GAACCACAAAAAGTTTCGAAAATC-TTAAAAATAGAAAACGAGTCGTC
* * * * *
3757637 TTGCCATCAAACATCACGTGAAGGCTTAAGGGGCCATTGTATGAGTTTACAAGCCATAAAAATGG
505 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-TATAAAAATGG
3757702 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
569 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
3757767 CGCATCCC
634 CGCATCCC
3757775 GCCAGCATAG
Statistics
Matches: 1370, Mismatches: 127, Indels: 82
0.87 0.08 0.05
Matches are distributed among these distances:
882 51 0.04
883 412 0.30
884 8 0.01
885 147 0.11
886 90 0.07
887 76 0.06
888 7 0.01
891 6 0.00
892 177 0.13
894 2 0.00
896 2 0.00
897 1 0.00
898 3 0.00
899 45 0.03
900 93 0.07
902 218 0.16
903 32 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (883 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCACATGCT
GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGGCCACGGAGCATCGTCGGAGAACCTGACC
GGCGGCATTGGGGTTCCGGCGATCGGGGGGCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCAAAACTTTCCGAAAAAATTTTAAAAAAT
CCGAACCACAAAAAGTTTCGAAAATCTTAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTATAAAAATGGCATTGGCATGCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTG
GCCGACGTAGTGCCCGCCGCTCGCCCACCCGCTCATTTCATCGATTGGTTGAGGCATACAGAGTT
CATTCCCAGTCCAAGATCAGAACCAACAAAGGGCTGATGCAGCAAGATCGGTAGACACAGAGGGG
GACCCGACCGATCCCCAGCTTGCGCATCCCGCCCTCTAGCCGGCTGAGCGCCCGCACGCTCATTT
CATGGGTTCACTTAAGCAAACAGAGTTCATTCCCAGTC
Found at i:3759490 original size:26 final size:26
Alignment explanation
Indices: 3759454--3759503 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
3759444 GACTTAGGCA
*
3759454 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGGAGTTCATTCCCAGCCTAAGCT
3759480 TACGGAGTTCATTCCCAGCCTAAG
1 TACGGAGTTCATTCCCAGCCTAAG
3759504 ATCAGATCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGCCTAAGCT
Found at i:3762093 original size:26 final size:26
Alignment explanation
Indices: 3762064--3762113 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
3762054 GACTTAGGCA
3762064 TACGGAGTTCATTCCCAGTATAAGCG
1 TACGGAGTTCATTCCCAGTATAAGCG
*
3762090 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTATAAG
3762114 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTATAAGCG
Found at i:3763379 original size:899 final size:893
Alignment explanation
Indices: 3759997--3765112 Score: 5785
Period size: 904 Copynumber: 5.7 Consensus size: 893
3759987 GAGTCATCTT
** *
3759997 GCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATC
1 GCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
3760062 GATCCACAACTTGCGCATCTCGTCTCTCTGGTCGGCGTAGTGCCCACCCATCCTGCCCGCCCACT
66 GATCCACAGCTTGCGCATCTCGTCTCTCTGG-CGGCGTAGTGCCCGCCCA-CC-GCCTG-CCGCT
* *
3760127 CGTTTCGTCGGTTGGCGTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGG
127 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGG
** * * * *
3760192 CTAAGGTAGCAGGATCAGCAGCACACAAAAGGGGACGCGACCGATCCTCGGCTTGCGCAT-CCGC
192 CTGCGGTAGCAGGATCAGCAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGC
* * *
3760256 CCTTCTGGCCGACTGAGCACCCGCACGCTCGTTTTGTGGGTTCACTTAGGCAGACGGAGTTCATT
257 CCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCAGACGGAGTTCATT
* * * * *
3760321 CCCAGTCTAAGCATACGGAGTTCACTCCCAGTTAAGATCAAATCAGACCGAGGGTTAAGACAGCA
322 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTTAAGATCGAACCAGACCGAGGGTTACGGCAGCA
* * * *
3760386 CATGCTGGGCTCGGGCATGTGCTTGTGCCACA-TTTTCTTCATCGGGGCACCATCACCGGAGCAT
387 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC-GAG-A-
* * * * **
3760450 CGTCGGAGAACC-AGACCGACGATATTACGGTT--TCGA-CGA-TGGG-GGGACCGGGGGGGTGT
449 ------A-AACCTA-ACCGACGGTATTAGGGTTCCACGATCGAGGGGGTGGGGGC-GGGGGGTGT
* *
3760509 GCGCACATGATGTGCGATGGGTGCTGGCACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
505 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
3760574 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
570 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
3760639 AAAGTGTCTAAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
635 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTA
* * *
3760704 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATC-TCCACCAAGTTTGGGGCCAAA
700 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA-CGTCTACCAAGTTTGTGGCCAAA
* * * * * *
3760768 AATCTTTCTGAAAAAGTTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAG
764 ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
* * *
3760833 AAAACGAGTCGTCTTGCCATTAAACTTCACGTGAACCCTTGAGGGACCATTGTATGAATTTACAA
829 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAA
** *
3760898 GCCATAAAAATTTCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
1 GCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
** * * ** *
3760963 GATCCATGGCTTGCGCATCTCGTCTCTTTGGCCGATTGAGTGCCCGCACGC-CCGCATG-CG--C
66 GATCCACAGCTTGCGCATCTCGTCTCTCTGGCGGCGT-AGTGCCCGC-C-CACCGCCTGCCGCTC
* * * * * ** *
3761024 GTTTCGTCGATTGGGTTAAGCATACAGAGTTCATTCCCAATCTAAGATTGGACC--A-CTA-GG-
128 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGC
** * * * * ** * **
3761084 TTAGGT-G-AGGATCTGTAGCACGTAGAGGTTTG--CAG-CCGATCCCC-GCTTGCG-AT-CCAT
193 TGCGGTAGCAGGATCAGCAGCACGCAAAGG-GGGACCCGACCGATCCCCGGCTTGCGCATCCCGC
* *
3761141 CCCT-TGG-C-ACTG-G-GCCCGCACGCTCG-TTCGT-CG-T-AC---GGC--A---TGTTCATT
257 CCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCAGACGGAGTTCATT
* *
3761189 -CTAGT-T---CATA-GCGAGTTCATTCCCAGACTAAGAT-G-ACC-GACCGA-GGTTACGGCAG
322 CCCAGTCTAAGCATACG-GAGTTCATTCCCAG-TTAAGATCGAACCAGACCGAGGGTTACGGCAG
* * *
3761244 CACACATGCTAGGCTCGGGCATGTGCT-GTG-CGCATTTTTCTTCGTCAGGGCACCATCGTCG-G
385 --CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAG
* * ** * ** * * * ** * *
3761306 --AGCATTGCTGGA-GAAACTGATGCTGGCACGAT-TAGTGTCGCGATCGAGGGGCGGGGGGTGT
448 AAAACCTAAC-CGACGGTA-TTAGGGTTCCACGATCGAG-G--G-GGT-G-GGGGCGGGGGGTGT
* * ** * * *
3761367 -TGCAGAAAATGTGTGAT-GGTTC-GGTACATCTGGCCCTTAATATTGG-CCCCTATGCCTCATC
505 GCGCACATGATGTGCGATGGGTGCTGGTAC-T-TGGCCCTT-ATATTGGCCCCCTATCCCTCATC
*
3761428 -AACC-CAAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACCAGGTTTGCTGCCAGTCGC
567 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA-CAGGTTTGCTGCCAGTAGC
* *
3761490 CATTAAAGTGGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACA-TCGAT
631 CATTAAAGT-GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-ATTCGAG
* * *
3761554 TTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
694 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGTGG
* * **
3761619 CCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCCAGAAA
759 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
* *
3761684 AATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
824 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATT
3761749 TACAA
889 TACAA
* * *
3761754 GCCAT--AAA-GGCATTGGCACGCAGAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATC
1 GCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * *
3761816 GATCGAC-GCCTGTGCATCCCGTCTCT-TGGGCGGCGTAGTGCCCACCTGCCCACTCGCCCGCGC
66 GATCCACAGCTTGCGCATCTCGTCTCTCT-GGCGGCGTAGTG--C-CC-GCCCAC-CGCCTGC-C
* * *
3761879 CCTCGTTTCGTCGGGTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CCA
124 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGA
** * * ** * * * *
3761943 AAGCTTACGGCAGCAGGATTGGTAGCATGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATC
189 GGGC-TGCGGTAGCAGGATCAGCAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
* ** * * * * * *
3762008 CCGCCCCTCTGGTCGGTTGAGCGCCCGAACGGTCATTTTGTGGGTTGACTTAGGCATACGGAGTT
253 CCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCAGACGGAGTT
* * * *
3762073 CATTCCCAGTATAAGCGTACGGAGTTCATTCCCAGTCTAAGATC-AGATCGGACCGAGGGTTACG
318 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT-TAAGATCGA-ACCAGACCGAGGGTTACG
* * * * **
3762137 ACAGCACATGCTGGGCTCGAGCATTTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCTG
381 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--C--
* * * *
3762202 GAGCTTCGTCAGAGAACCTGACCGACGGTATTAGGGTTCTGACGATC----GGG-GGGGCCGGGG
442 --GC--CG--AGAAAACCTAACCGACGGTATTAGGGTTC-CACGATCGAGGGGGTGGGGGCGGGG
* * *
3762262 GGTATGCGCACATGATGTGTGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCA
500 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
**
3762327 TCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
565 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
3762392 CCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACAATTCGAGT
630 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGT
*
3762457 TTTTAGCTGAATTTTCTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGTGGC
695 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGTGGC
* ** *
3762522 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAGAATCGTGAAAA
760 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
* * * *
3762587 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGCTTTAAGGGACCACTGTTTGATTTT
825 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTT
3762652 ACAA
890 ACAA
*
3762656 GCCATAAAAATGGCATTGGTATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
1 GCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
*
3762721 GATCCACAGCTTGCACATCTCGTCTCTCTGGCTGGCGTAGTGCCCGCCCACCGCCTGCCGCTCGT
66 GATCCACAGCTTGCGCATCTCGTCTCTCTGGC-GGCGTAGTGCCCGCCCACCGCCTGCCGCTCGT
* * * * *
3762786 TTCATCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTTTAAGATCAGACTGGATCAAGGGCTG
130 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGCTG
* * * * * *
3762851 CGGTAGCAGGATCAGCAGAACGCAGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCTGTCCC
195 CGGTAGCAGGATCAGCAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
* * *
3762916 TCTGGGCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTCACTTAGGCAGACGGAGTTCATTCCC
260 TCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCAGACGGAGTTCATTCCC
** **
3762981 AGTCTAAGCATACAAAGTTCATTCCCAGTATAAGATCGAACCAGACCGAGGGTTGTGGCAGCACA
325 AGTCTAAGCATACGGAGTTCATTCCCAGT-TAAGATCGAACCAGACCGAGGGTTACGGCAGCACA
* ** *
3763046 TGCTGGGCTCGGGCATGTGCTGCTATCGCATTTTTCTTCGTCGAGGCACCATCGCCGA-AAAACC
389 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAGAAAACC
* * *
3763110 TAACCGACGGCATTGGGGTTCCAACGATCGAGGGGGCTGGGGGCCGGGGGGCGTGTGTGCACATG
454 TAACCGACGGTATTAGGGTTCC-ACGATCGAGGGGG-TGGGGG-C-GGGGG-GTGTGCGCACATG
*
3763175 ATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGC-AGA
514 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-CAAGA
*
3763239 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGTTTTGCTGCCAGTAGCCATTAAAGTGTC
578 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
3763304 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGATTTTTTAGCTGAATT
643 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAATT
3763369 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGTGGCCAAAACTCCTTCC
708 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGTGGCCAAAACTCCTTCC
* *
3763434 AAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
773 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* * *
3763499 CGTCTTGCCATGAGACTTCACGTGAAGCCTTAAGGGACTACTGTATGAATTTACAA
838 CGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAA
*
3763555 GCTATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
1 GCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
*
3763620 GATCCACAGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCTCGCCCGCT
66 GATCCACAGCTTGCGCATCTCGTCTCTCTGG-CGGCGTAGTGCCCGCCCA-CCGCCT-G-CCGCT
*
3763685 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGTATTGAGG
127 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG-ATCGAGG
* * * * *
3763750 GCTGTGGTAGCTGGATCAACAGCACGCAAAGGGGGACCCGATCGATCCTCGGCTTGC-CATCCCG
191 GCTGCGGTAGCAGGATCAGCAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG
* * *
3763814 CCCCTCTGGCCGGCTGACCGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCAGAAGGAGTTCAT
256 CCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCAGACGGAGTTCAT
* * *
3763879 TCCCAGTCTAAGCATACGGAGTTCACTCCCAGTTAAGATCGAACCAGACCAAGGGTTGCGGCAGC
321 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTTAAGATCGAACCAGACCGAGGGTTACGGCAGC
*
3763944 ACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCA
386 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC---G-A
* ** * *
3764009 TCGTCGAAGAACC-AGACCGGCGGTATTACGATTTCGACGATCG-GGAGGGT---CG-GGGGGGT
447 -----GAA-AACCTA-ACCGACGGTATTA-GGGTTCCACGATCGAGG-GGGTGGGGGCGGGGGGT
* * * * * *
3764068 GTGCACACATGATGTGCGATGGGTGGTGGCACATGGCCCTTATATTGGCCCTCTACCCCTCATCA
503 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
3764133 AACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
568 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
3764198 TTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTT
633 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTT
* *
3764263 TAGCTTAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATGACGTCTACCAAGTTT-TGGGCCA
698 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGT-GGCCA
* * ** * * *
3764327 AAACTCCTTTCGAAAAAATTTTAAAAAATTCAAAACCATAAAAAGTTTCCAAAATCGTGAAAAAC
762 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
* ** *
3764392 AGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCGTTGTATGAATTTAC
827 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTAC
3764457 AA
892 AA
* *
3764459 GCCATGAAAATGGCATTGGCA--CATAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCTA
1 GCCATAAAAATGGCATTGGCATGCA-A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * *
3764522 TCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGACGTACTGCCTG--C-CCG-C--CCGCTC
64 TCGATCCACAGCTTGCGCATCTCGTCTCTCTGG-CGGCGTAGTGCCCGCCCACCGCCTGCCGCTC
* * * * **
3764581 GTTTCGTAGGTTGGCTAAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCGGATCGAGGAT
128 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGC
** * * * * * *
3764646 TGCGACAGCAAGATCGGTAGCACACAAAGGGGGACCCGACCGATCCTCGGCTTGGGCATCCCGCC
193 TGCGGTAGCAGGATCAGCAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCC
* * * * *
3764711 CCTCTGGTCGACAGAACGCCCGCACG--C---TCGTGGGTTGACTTAGGCATACGGAGTTCATTC
258 CCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCAGACGGAGTTCATTC
* * * * * ** *
3764771 TCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC-AGACCGGACCAAGGGTTGCGGTGGG
323 CCAGTCTAAGCATACGGAGTTCATTCCCAGT-TAAGATCGA-ACCAGACCGAGGGTTACGGCAGC
** * * * *
3764835 ACATGCTGGAATCGGGCATGTG-TCGGTGCCACATTTTTCTCCGTCGGGGCACCATCACCG-GAG
386 ACATGCTGGGCTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAGAA
* * * * * * * *
3764898 AACCTGACTGGCAGCATTGGGGTTCCCACGATC-AGGGGGT-----CGGGCGGTGCGCGCACATG
450 AACCTAACCGACGGTATTAGGGTT-CCACGATCGAGGGGGTGGGGGCGGGGGGTGTGCGCACATG
* *
3764957 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCCAGAA
514 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
* * * *
3765022 CTCACACCCCCTTAAAGAGAATTTGAGAATTTACAGGTTTGCTGCCAGTAGCAATTATAGTGTCT
579 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
3765087 GAAATGGGGACACTTTTTTCAAATGG
644 GAAATGGGGACACTTTTTTCAAATGG
3765113 GGACACTTCA
Statistics
Matches: 3614, Mismatches: 442, Indels: 341
0.82 0.10 0.08
Matches are distributed among these distances:
848 6 0.00
849 6 0.00
851 9 0.00
852 21 0.01
853 57 0.02
854 33 0.01
855 51 0.01
856 245 0.07
857 35 0.01
858 17 0.00
859 51 0.01
860 13 0.00
861 33 0.01
862 28 0.01
863 17 0.00
864 9 0.00
865 2 0.00
866 18 0.00
867 6 0.00
868 15 0.00
869 7 0.00
870 2 0.00
871 7 0.00
872 3 0.00
873 4 0.00
874 2 0.00
875 1 0.00
876 12 0.00
877 5 0.00
878 161 0.04
879 12 0.00
880 36 0.01
881 3 0.00
882 4 0.00
883 4 0.00
884 3 0.00
885 8 0.00
886 7 0.00
887 8 0.00
888 9 0.00
889 19 0.01
890 92 0.03
891 83 0.02
892 2 0.00
893 28 0.01
894 55 0.02
895 115 0.03
896 60 0.02
897 33 0.01
898 6 0.00
899 482 0.13
900 35 0.01
901 481 0.13
902 413 0.11
903 106 0.03
904 488 0.14
905 65 0.02
906 18 0.00
907 10 0.00
908 2 0.00
909 6 0.00
910 11 0.00
911 6 0.00
912 24 0.01
913 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
GCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
GATCCACAGCTTGCGCATCTCGTCTCTCTGGCGGCGTAGTGCCCGCCCACCGCCTGCCGCTCGTT
TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGCTGC
GGTAGCAGGATCAGCAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
CTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCAGACGGAGTTCATTCCCA
GTCTAAGCATACGGAGTTCATTCCCAGTTAAGATCGAACCAGACCGAGGGTTACGGCAGCACATG
CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAGAAAACCTA
ACCGACGGTATTAGGGTTCCACGATCGAGGGGGTGGGGGCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGTGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAA
Found at i:3764332 original size:904 final size:901
Alignment explanation
Indices: 3759997--3765112 Score: 6075
Period size: 899 Copynumber: 5.8 Consensus size: 901
3759987 GAGTCATCTT
** *
3759997 GCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATC
1 GCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * * *
3760062 GATCCACAACTTGCGCATCTCGTCTCTCTGGTCGGCGTAGTGCCCACCCATCCTGCCCGCCCACT
66 GATCCACAGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCA-CCCGCCCGCCCGCT
* *
3760127 CGTTTCGTCGGTTGGCGTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGG
130 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGG
** * * *
3760192 CTAAGGTAGCAGGATCAGCAGCACACAAAAGGGGACGCGACCGATCCTCGGCTTGCGCAT-CCGC
195 CTGTGGTAGCAGGATCAGCAGCACGCAAAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGC
* * *
3760256 CCTTCTGGCCGACTGAGCACCCGCACGCTCGTTTTGTGGGTTCACTTAGGCAGACGGAGTTCATT
260 CCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCAGACGGAGTTCATT
* * * * *
3760321 CCCAGTCTAAGCATACGGAGTTCACTCCCAGT-TAAGATCAAATCAGACCGAGGGTTAAGACAGC
325 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGC
* * * *
3760385 ACATGCTGGGCTCGGGCATGTGCTTGTGCCACA-TTTTCTTCATCGGGGCACCATCACCGGAGCA
390 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCA
* * *
3760449 TCGTCGGAGAACCAGACCGACGATATTACGGTTTCGACGAT-GGGGGGACCGGGGGGGTGTGCGC
455 TCG-CGAAGAACCAGACCGACGGTATTA-GGTTTCGACGATCGGGGGG-TCGGGGGGGTGTGCGC
*
3760513 ACATGATGTGCGATGGGTGCTGGCACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
517 ACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
3760578 AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
582 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
3760643 TGTCTAAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
647 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * *
3760708 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATC-TCCACCAAGTTTGGGGCCAAAAATC
712 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA-CGTCTACCAAGTTTTGGGCCAAAACTC
* * * * *
3760772 TTTCTGAAAAAGTTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAA
776 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
* * *
3760837 CGAGTCGTCTTGCCATTAAACTTCACGTGAACCCTTGAGGGACCATTGTATGAATTTACAA
841 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAA
** *
3760898 GCCATAAAAATTTCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
1 GCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
** * * ** *
3760963 GATCCATGGCTTGCGCATCTCGTCTCTTTGGCCGA-TTGAGTGCCCG--CA--CGCCCGCATGCG
66 GATCCACAGCTTGCGCATCTCGTCTCTCTGGCCGACGT-AGTGCCCGCCCACCCGCCCGCCCGCT
* * * * * ** *
3761023 CGTTTCGTCGATTGGGTTAAGCATACAGAGTTCATTCCCAATCTAAGATTGGACC--A-CTA-GG
130 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGG
* * * * ** * *
3761084 -T-TAGGT-G-AGGATCTGTAGCACGTAGAGGTTTG--CAG-CCGATCC-CCGCTTGCG-AT-CC
195 CTGT-GGTAGCAGGATCAGCAGCACGCAAAGG-GGGACCCGACCGATCCTCGGCTTGCGCATCCC
** * *
3761139 ATCCCT-TGG-C-ACTG-G-GCCCGCACGCTCG-TTCGT-CG-T-AC---GGC--A---TGTTCA
258 GCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCAGACGGAGTTCA
* *
3761187 TT-CTAGT-T---CATA-GCGAGTTCATTCCCAGACTAAGAT-G-ACC-GACCGA-GGTTACGGC
323 TTCCCAGTCTAAGCATACG-GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGC
* * *
3761242 AGCACACATGCTAGGCTCGGGCATGTGCT-GTG-CGCATTTTTCTTCGTCAGGGCACCATCGTCG
387 AG--CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCG
* * * * * * *
3761305 GAGCATTGCTGGAGAAACTGATGCTGGCAC-G-ATTA-GTGTCG-CGATCGAGGGG-C-GGGGGG
450 GAGCATCGC-GAAGAACCAGA--C-CG-ACGGTATTAGGTTTCGACGATCGGGGGGTCGGGGGGG
* * ** * * * *
3761364 TGT-TGCAGAAAATGTGTGAT-GGTTC-GGTACATCTGGCCCTTAATATTGG-CCCCTATGCCTC
510 TGTGCGCACATGATGTGCGATGGGTGCTGGCAC-T-TGGCCCTT-ATATTGGCCCCCTATCCCTC
*
3761425 ATC-AACC-CAAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACCAGGTTTGCTGCCAGT
572 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA-CAGGTTTGCTGCCAGT
* * *
3761487 CGCCATTAAAGTGGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCG
636 AGCCATTAAAGT-GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * *
3761552 ATTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
700 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTG
* * **
3761617 GGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCCAGA
765 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
* *
3761682 AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
830 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAA
3761747 TTTACAA
895 TTTACAA
* * *
3761754 GCCAT--AAA-GGCATTGGCACGCAGAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATC
1 GCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * * * *
3761816 GATCGAC-GCCTGTGCATCCCGTCTCT-TGGGCGGCGTAGTGCCCACCTGCCCACTCGCCCGCGC
66 GATCCACAGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTG--C-CC-GCCCACCCGCCCGC-C
* *
3761879 C-CTCGTTTCGTCGGGTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CC
126 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCG
** * ** * * * * *
3761942 AAAGCT-TACGGCAGCAGGATTGGTAGCATGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCA
191 AGGGCTGT--GGTAGCAGGATCAGCAGCACGCAAAGGGGGACCCGACCGATCCTCGGCTTGCGCA
* ** * * * * * *
3762006 TCCCGCCCCTCTGGTCGGTTGAGCGCCCGAACGGTCATTTTGTGGGTTGACTTAGGCATACGGAG
254 TCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCAGACGGAG
* * * *
3762071 TTCATTCCCAGTATAAGCGTACGGAGTTCATTCCCAGTCTAAGATC-AGATCGGACCGAGGGTTA
319 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTA
* * * * **
3762135 CGACAGCACATGCTGGGCTCGAGCATTTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGC
383 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC
* * * * * *
3762200 TGGAGCTTCGTC-AGAGAACCTGACCGACGGTATTAGGGTTCTGACGATCGGGGGGGCCGGGGGG
448 CGGAGCATCG-CGA-AGAACCAGACCGACGGTATTAGGTTTC-GACGATCGGGGGGTCGGGGGGG
* * * *
3762264 TATGCGCACATGATGTGTGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATC
510 TGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
3762329 AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
575 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
3762394 ATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACAATTCGAGTTT
640 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
*
3762459 TTAGCTGAATTTTCTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG-TTTGTGGCC
705 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTG-GGCC
* ** *
3762523 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAGAATCGTGAAAAA
769 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
* * * *
3762588 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGCTTTAAGGGACCACTGTTTGATTTTA
834 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTA
3762653 CAA
899 CAA
*
3762656 GCCATAAAAATGGCATTGGTATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
1 GCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
3762721 GATCCACAGCTTGCACATCTCGTCTCTCTGGCTGGCGTAGTGCCCGCCCA-CCGCCTG-CCGCTC
66 GATCCACAGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGCTC
* * * * *
3762784 GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTTTAAGATCAGACTGGATCAAGGGC
131 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGC
* * * * * * * *
3762849 TGCGGTAGCAGGATCAGCAGAACGCAGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCTGTC
196 TGTGGTAGCAGGATCAGCAGCACGCAAAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCC
* * *
3762914 CCTCTGGGCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTCACTTAGGCAGACGGAGTTCATTC
261 CCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCAGACGGAGTTCATTC
** * **
3762979 CCAGTCTAAGCATACAAAGTTCATTCCCAGTATAAGATCGAACCAGACCGAGGGTTGTGGCAGCA
326 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCA
* ** *
3763044 CATGCTGGGCTCGGGCATGTGCTGCTATCGCATTTTTCTTCGTCGAGGCACCATCGCC---G-A-
391 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCAT
* * * *
3763104 ----AA-AACCTA-ACCGACGGCATTGGGGTTCCAACGATCGAGGGGGCTGGGGGCCGGGGGGCG
456 CGCGAAGAACC-AGACCGACGGTATT-AGGTTTCGACGATCG-GGGGG-T------CGGGGGG-G
* * *
3763163 TGTGTGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
510 TGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
3763228 AAACCT-GCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGTTTTGCTGCCAGTAGC
575 AAACCTCG-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
3763292 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGATTT
639 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
3763357 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG-TTTGTGGC
704 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTG-GGC
* *
3763421 CAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
768 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
* * *
3763486 ATAGAAAACGAGTCGTCTTGCCATGAGACTTCACGTGAAGCCTTAAGGGACTACTGTATGAATTT
833 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTT
3763551 ACAA
898 ACAA
*
3763555 GCTATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
1 GCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
3763620 GATCCACAGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCTCGCCCGCT
66 GATCCACAGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCC-CGCCCGCT
*
3763685 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGTATTGAGG
130 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG-ATCGAGG
* * *
3763750 GCTGTGGTAGCTGGATCAACAGCACGCAAAGGGGGACCCGATCGATCCTCGGCTTGC-CATCCCG
194 GCTGTGGTAGCAGGATCAGCAGCACGCAAAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCG
* * *
3763814 CCCCTCTGGCCGGCTGACCGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCAGAAGGAGTTCAT
259 CCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCAGACGGAGTTCAT
* * *
3763879 TCCCAGTCTAAGCATACGGAGTTCACTCCCAGT-TAAGATCGAACCAGACCAAGGGTTGCGGCAG
324 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAG
*
3763943 CACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGC
389 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGC
* * *
3764008 ATCGTCGAAGAACCAGACCGGCGGTATTACGATTTCGACGATCGGGAGGGTCGGGGGGGTGTGCA
454 ATCG-CGAAGAACCAGACCGACGGTATTA-GGTTTCGACGATCGGG-GGGTCGGGGGGGTGTGCG
* * * *
3764073 CACATGATGTGCGATGGGTGGTGGCACATGGCCCTTATATTGGCCCTCTACCCCTCATCAAACCT
516 CACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
3764138 CGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
581 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
3764203 GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCT
646 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
3764268 TAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATGACGTCTACCAAGTTTTGGGCCAAAACTC
711 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTC
* * ** * * *
3764333 CTTTCGAAAAAATTTTAAAAAATTCAAAACCATAAAAAGTTTCCAAAATCGTGAAAAACAGAAAA
776 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
* ** *
3764398 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCGTTGTATGAATTTACAA
841 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAA
* *
3764459 GCCATGAAAATGGCATTGGCA--CATAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCTA
1 GCCATAAAAATGGCATTGGCATGCA-A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * *
3764522 TCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGACGTA----CTG----CCTGCCCGCCCGC
64 TCGATCCACAGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGC
* * * *
3764579 TCGTTTCGTAGGTTGGCTAAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCGGATCGAGG
129 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGG
** * ** * * * * *
3764644 ATTGCGACAGCAAGATCGGTAGCACACAAAGGGGGACCCGACCGATCCTCGGCTTGGGCATCCCG
194 GCTGTGGTAGCAGGATCAGCAGCACGCAAAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCG
* * * * *
3764709 CCCCTCTGGTCGACAGAACGCCCGCACG--C---TCGTGGGTTGACTTAGGCATACGGAGTTCAT
259 CCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCAGACGGAGTTCAT
* * * * * **
3764769 TCTCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC-AGACCGGACCAAGGGTTGCGGTG
324 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTACGGCA
* ** * *
3764833 GGACATGCTGGAATCGGGCATGTG-TCGGTGCCACATTTTTCTCCGTCGGGGCACCAT---C--A
388 GCACATGCTGGGCTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGA
* * * * * * * * * * *
3764892 -C--CG-G-AGAACCTGACTGGCAGCATTGGGGTTCCCACGATCAGGGGGTC-GGGCGGTGCGCG
452 GCATCGCGAAGAACCAGACCGACGGTATT-AGGTTTCGACGATCGGGGGGTCGGGGGGGTGTGCG
* *
3764951 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCT
516 CACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * * * *
3765016 CCAGAACTCACACCCCCTTAAAGAGAATTTGAGAATTTACAGGTTTGCTGCCAGTAGCAATTATA
581 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
3765081 GTGTCTGAAATGGGGACACTTTTTTCAAATGG
646 GTGTCTGAAATGGGGACACTTTTTTCAAATGG
3765113 GGACACTTCA
Statistics
Matches: 3641, Mismatches: 436, Indels: 299
0.83 0.10 0.07
Matches are distributed among these distances:
851 9 0.00
852 17 0.00
853 56 0.02
854 31 0.01
855 45 0.01
856 245 0.07
857 36 0.01
858 16 0.00
859 56 0.02
860 17 0.00
861 60 0.02
862 28 0.01
863 24 0.01
864 9 0.00
865 4 0.00
866 18 0.00
867 6 0.00
868 13 0.00
869 8 0.00
870 2 0.00
871 7 0.00
872 3 0.00
873 4 0.00
874 2 0.00
875 1 0.00
876 12 0.00
877 5 0.00
878 161 0.04
879 10 0.00
880 42 0.01
881 2 0.00
882 4 0.00
883 6 0.00
884 3 0.00
885 9 0.00
886 9 0.00
887 7 0.00
888 9 0.00
889 19 0.01
890 85 0.02
891 88 0.02
892 3 0.00
893 29 0.01
894 54 0.01
895 121 0.03
896 71 0.02
897 50 0.01
898 19 0.01
899 483 0.13
900 25 0.01
901 481 0.13
902 407 0.11
903 100 0.03
904 479 0.13
905 70 0.02
906 15 0.00
907 12 0.00
911 6 0.00
912 28 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
GCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
GATCCACAGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGCTC
GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGC
TGTGGTAGCAGGATCAGCAGCACGCAAAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCC
CCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCAGACGGAGTTCATTC
CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCA
CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCAT
CGCGAAGAACCAGACCGACGGTATTAGGTTTCGACGATCGGGGGGTCGGGGGGGTGTGCGCACAT
GATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCC
GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAA
Found at i:3764790 original size:26 final size:26
Alignment explanation
Indices: 3764754--3764806 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3764744 GTTGACTTAG
* *
3764754 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3764780 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3764806 G
1 G
3764807 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3765197 original size:86 final size:86
Alignment explanation
Indices: 3765036--3765198 Score: 238
Period size: 86 Copynumber: 1.9 Consensus size: 86
3765026 CACCCCCTTA
* *
3765036 AAGAGAATTTGAGAATTTACAGGTTTGCTGCCAGTAGCAATTATAGTGTCTGAAATGGGGACACT
1 AAGAGAATTTGAGAATTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACT
*
3765101 TTTTTCAAATGGGGACACTTC
66 ATTTTCAAATGGGGACACTTC
* * * *
3765122 AAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGACA-T
1 AAGAGAATTTGAGAATTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACT
*
3765186 AATTTTGAAATGG
66 -ATTTTCAAATGG
3765199 TCAAAAACTC
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
85 1 0.01
86 67 0.99
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.32
Consensus pattern (86 bp):
AAGAGAATTTGAGAATTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACT
ATTTTCAAATGGGGACACTTC
Found at i:3766481 original size:710 final size:710
Alignment explanation
Indices: 3765122--3767783 Score: 3931
Period size: 710 Copynumber: 3.7 Consensus size: 710
3765112 GGGACACTTC
* * *
3765122 AAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGACA-T
1 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAATGGGGACACT
* *
3765186 AATTTTGAAATGGTCA-AAAACTCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
66 -TTTTTCAAATGGTCACAAAA-TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
*
3765250 CAAAAAAAATACAAGGATCA-GCTCTACCAAGTTTGGGGCCAAAACT-GCTTCCAAAAAAATTTT
129 CAAAAAAAATACAAGGATCACG-TCTACCAAGTTTGGGGCCAAAACTAG-TTCCAAAAAAATTTA
** ** * * *
3765313 AAAAAATCTTGAACCGTAAAAAATTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
192 AAAAAATCCAGAACCCCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
3765378 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGC
257 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGC
* *
3765443 ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCAACGGCTTGCACATCT
322 ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACAGCTTGCACATCT
* * * * *
3765508 CGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGTTCGTTTTGTCGATTGGCTTAGGCATATGGA
387 CGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGA
* *
3765573 GTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCAT
452 GTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCAT
* *
3765638 GTGCTAGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGTGCGTCGCCGGAGAACCTAACCG
517 GTGCTAGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCGTCGCCGGAGAACCCAACCG
*
3765703 GCAGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTG
582 GCAGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
3765767 CTGGTACTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAATTCACACCCCTTTA
646 CTGGTACTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTA
* *
3765832 AAGAGCATTTGACATTTTATAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAATGGGGACACT
1 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAATGGGGACACT
* *
3765897 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGGGTTTTTAGCTTAATTTTTTTTGTGCATGCC
66 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCC
* *
3765962 AAAAAAAGTACAAGGATCACGTCTACCAAG-TTGGGGCCAAAACTAGTTCTAAAAAAATTTAAAA
130 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTAGTTCCAAAAAAATTTAAAA
3766026 AAATCCAGAACCCCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
195 AAATCCAGAACCCCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
3766091 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCACA
260 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCACA
* *
3766156 CAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGCACATCCCGT
325 CAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACAGCTTGCACATCTCGT
* * * *
3766221 CTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCTCGTTTTGTCGATTGGCTTAGGCATATGGAGTT
390 CTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTT
* *
3766286 CATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTG
455 CATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTG
3766351 CTAGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCGTCGCCGGAGAACCCAACCGGCA
520 CTAGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCGTCGCCGGAGAACCCAACCGGCA
3766416 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
585 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
3766481 TACTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTA
650 TACTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTA
*
3766542 AAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAATGGGGACACT
1 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAATGGGGACACT
*
3766607 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTTGTGCATGCC
66 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCC
* ** * *
3766672 AAAAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
130 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTAGTTCCAAAAAAATTTAAAA
** **
3766737 AAATCTC-GAACTGCAAAAAGTTTCGAAAATCATGAAAAAGGGAAAACGAGTCGTCTTGCCATGA
195 AAATC-CAGAACCCCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
3766801 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAAT
259 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCAC
* *
3766866 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCACATCTCG
324 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACAGCTTGCACATCTCG
* *
3766931 TCTCTCTGGCCGGTATAGTGCCGGCCCGCCCGCCCGCCAGCTCGTTTCGTCGGTTGGCTTAGGCA
389 TCTCTCTGGCCGGCATAGT----GCCCGCCCG--C-CC-GCTCGTTTCGTCGATTGGCTTAGGCA
* * * * * *
3766996 TACAGAGCTCATTCTCAGTCTAAGATCGGAGT-GGACCGAGGGTTGCAGCAGCACATGCTGGGCT
446 TACGGAGTTCATTCCCAGTCTAAGATCGGA-TCAGACCGAGGGTTACGGCAGCACATGCTGGGCT
* *** * * *
3767060 CGGGCATGTGCTGGTGTTGCAATTTTCTTCATCGAGGCACCATCGTCGGAGCATCGTCGGAGCAT
510 CGGGCATGTGCTAGTGCCACATTTTTCTTCGTCGGGGCACCATCGTC-G-G-A--G-C---G--T
* ** * ** *
3767125 CGCCGGAGCATCGCCGGAGAACCTGACCGGTGGCATTTGGGTTTTGGCGATCGGGGGGGCCGGGG
564 CGCCGGAG-AAC-CC-----A----ACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
* * **
3767190 GGTGTGCGCATATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
618 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTCACCCTTATATTGGCCCCCTATCCCTCA
*
3767255 TCAAACCTCGAGAACTCACACCCCCTTA
683 TCAAACCTCGAGAACTCACACCCCTTTA
3767283 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAATGGGGACACT
1 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAATGGGGACACT
* * * * *
3767348 TTTTTCAAATGGTCATAAAAACTTGTACAGTTAGAGTTTTTAGCTGAATTTTTTTGGGCATGCCA
66 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
3767413 AGAAAAGTACAAGGATCACGTCTACCAAG-TTGGGGCCAAAACTAGTTCTAAAAAAATTTAAAAA
131 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTAGTTCCAAAAAAATTTAAAAA
3767477 AATCCAGAACCCCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
196 AATCCAGAACCCCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* **
3767542 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
261 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCACAC
* * * *
3767607 AGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACAGCTAGCACATCTCGTT
326 AGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACAGCTTGCACATCTCGTC
* * *
3767672 TCTCTGGCCGGCATAGTGCCCGCCCGCCTGCCCGCTCATTTCATCGATTGGCTTAAGCATACGGA
391 TCTCTGGCCGGCATAGTGCCCG--C-CC-GCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGA
* *
3767737 GTTCATTCCCAGTCTAAGATTGGA-CCGAACCGAGGGTTACGGCAGCA
452 GTTCATTCCCAGTCTAAGATCGGATCAG-ACCGAGGGTTACGGCAGCA
3767784 GGATCGGCAG
Statistics
Matches: 1792, Mismatches: 114, Indels: 67
0.91 0.06 0.03
Matches are distributed among these distances:
710 774 0.43
711 283 0.16
712 2 0.00
715 9 0.01
717 1 0.00
718 2 0.00
719 119 0.07
720 2 0.00
721 1 0.00
722 1 0.00
724 1 0.00
725 1 0.00
728 1 0.00
730 9 0.01
731 2 0.00
732 2 0.00
734 1 0.00
735 70 0.04
736 2 0.00
737 3 0.00
738 3 0.00
739 232 0.13
740 42 0.02
741 229 0.13
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (710 bp):
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTAGTTCCAAAAAAATTTAAAAA
AATCCAGAACCCCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCACAC
AGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACAGCTTGCACATCTCGTC
TCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGC
TAGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCGTCGCCGGAGAACCCAACCGGCAG
CATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTA
Found at i:3767114 original size:11 final size:11
Alignment explanation
Indices: 3767100--3767143 Score: 70
Period size: 11 Copynumber: 4.0 Consensus size: 11
3767090 ATCGAGGCAC
*
3767100 CATCGTCGGAG
1 CATCGCCGGAG
*
3767111 CATCGTCGGAG
1 CATCGCCGGAG
3767122 CATCGCCGGAG
1 CATCGCCGGAG
3767133 CATCGCCGGAG
1 CATCGCCGGAG
3767144 AACCTGACCG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
11 32 1.00
ACGTcount: A:0.18, C:0.32, G:0.36, T:0.14
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:3767916 original size:26 final size:26
Alignment explanation
Indices: 3767887--3767939 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3767877 GTTGATTTAG
*
3767887 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCACAGTCTAA
* *
3767913 GCATATGGAGTTCATTCACAGTCTAA
1 GCATACGAAGTTCATTCACAGTCTAA
3767939 G
1 G
3767940 ATCAGCCCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCACAGTCTAA
Found at i:3769799 original size:715 final size:717
Alignment explanation
Indices: 3767913--3770721 Score: 4068
Period size: 715 Copynumber: 3.9 Consensus size: 717
3767903 CCCAGTCTAA
* * * *
3767913 GCATATGGAGTTCATTCACAGTCTAAGATCAGCCCAGG-CCGAGGGTTACGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GGACCGAGGGTTACAGCAGCACATGCTGG
* * *
3767977 GCTCGGGCATGTGCTGGTGCCGCATTTTTTTTTCACCGGGGCACCAT---C---G--T-CT-GAG
65 GCTCAGGCATGTGCTGGTGCCGCA-TTTTTCTTCGCCGGGGCACCATCACCGGAGCATACTAGAG
* * * * * * *
3768032 AACCTGACTGGCGGCATTGGGGTTCCT-ACGATCGAGGGGGACGGGGGGCTGTGTGCACATGATG
129 AACCTAACCGACGACATTGGGGTT-CTGGCGATCG-GGGGGGCGGGGGG-TGTGCGCACATGATG
* * * *
3768096 TACGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAAAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
3768161 ACACCCCCTTAAAGAGCATTTGAGATTTTCCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
256 ACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
3768226 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACAC-TCTGAGTTTTTAGCTGAATTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTT
* *
3768290 TTGTGCATGCCAAA-AAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTAG--TTCC
385 TTGTGCATG-CAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-AGTTTTCT
* * * * *
3768352 AAAAAAATTTTAAAAATTCTAGAACCACCAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
448 AAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAATCGAGT
*
3768417 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAA
513 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
3768482 ATGGCATTGGC-TCATAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACG
578 ATGGCATTGGCAT-GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
** * * * * * * *
3768546 GCTTACGCATCCCGTCTCTCTAGTCGGCATA--G-T-ACCCGCCCTTCCCGTTTGCCTGCTCGTT
642 GCTTGTGCATCCCGTCTCTCTGGCCAGCGTAGCGCTCACCCGTCC-GCCCG---GCC-GCTTGTT
* *
3768607 TCGTCGGTTGGCTTAG
702 TCGTCGGTCGACTTAG
* * * * *
3768623 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCTGACCAAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACAGCAGCACATGCTGGG
* * * * * ** *
3768688 CTC-GACCATGTGCTGGTGCCGCATTTTTCTTCTCCAGGGCACCATCGCCAGAGCATTGTCGGAG
66 CTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATACT-AGAG
* ** * * *
3768752 AACCTGACCGGTGGCATTGAGGTTCTGGCGATCGGAGGGGTCGGGGGGTGTGCGCACATGATGTG
129 AACCTAACCGACGACATTGGGGTTCTGGCGATCGG-GGGGGCGGGGGGTGTGCGCACATGATGTG
3768817 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
3768882 ACTCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTCAAA
258 AC-CCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
3768945 TGGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTG-ATTTGTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTT
* * **
3769009 TGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACA-CCTTCTAAA
386 TGTGCATGCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACAGTTTTCTAAA
* *
3769073 AAAAATTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAATCGAGTCGT
451 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAATCGAGTCGT
*
3769138 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** *
3769203 GCATTGGCATGTAGAAATATGAAGATGTTTCTAAACCCACCTACCACCCTATCGATCCATGGCTT
581 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
3769268 GTGCATCCCGTCTCTCTGGCCAGCGTAGCGCTCACCCGTCCGCCCGGCCGCTTGTTTTGTCGGTC
646 GTGCATCCCGTCTCTCTGGCCAGCGTAGCGCTCACCCGTCCGCCCGGCCGCTTGTTTCGTCGGTC
3769333 GACTTAG
711 GACTTAG
* * *
3769340 GCATACGGAGGTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACAGCAGCACATGCTGGG
3769405 CTCAGGCATGT-CTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCACTAGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCAT-ACTAGAGA
*
3769469 ACCTAACCGACGACATTGGGGTTCTGGCGATCGGGGGGGCTGGGGGTGTGCGCACATGATGTGCG
130 ACCTAACCGACGACATTGGGGTTCTGGCGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGCG
* * *
3769534 ATGGGTGCTGATACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
3769599 CCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
260 CCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
3769664 GGACGCTTTTTTCAAATGGTCAC-AAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
3769728 CATGCAAACAAAAATACAATGATCAGGTCTACCAAGTTTGGGGCCAAAA-AGTTTTCTGAAAAAA
390 CATGCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACAGTTTTCTAAAAAAA
*
3769792 TTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAATCGAGTCGTCTTG
455 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAATCGAGTCGTCTTG
*
3769857 CCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
**
3769922 TGGCATGTAGAAATATGAAGATGTTTCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGC
585 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGC
*
3769987 ATCCCGTCTCTCTGGCCAGCGTAGCGCTCACCCGTCCGCCCGCCCGCTTGTTTCGTCGGTCGACT
650 ATCCCGTCTCTCTGGCCAGCGTAGCGCTCACCCGTCCGCCCGGCCGCTTGTTTCGTCGGTCGACT
3770052 TAG
715 TAG
* * * **
3770055 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTATAATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACAGCAGCACATGCTGGG
*
3770120 CTCAGGCATGT-CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACTAGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCAT-ACTAGAGA
3770184 ACCTAACCGACGACATTGGGGTTCTGGCGATC-GGGGGGCTGGGGGGTGTGCGCACATGATGTGC
130 ACCTAACCGACGACATTGGGGTTCTGGCGATCGGGGGGGC-GGGGGGTGTGCGCACATGATGTGC
* *
3770248 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
3770313 CCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
259 CCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
3770378 GGGACGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAATTTTTTAGCTGAATGTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
3770443 GCATGCCAACAAAAATACAATGATCAGGTCTACCAAGTTTGGGGCCAAAA-ATTTTTCTGAAAAA
389 GCATGCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACAGTTTTCTAAAAAA
*
3770507 ATTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAT-GAGTCGTCT
454 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAG-AAATCGAGTCGTCT
3770571 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
3770636 ATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTCACCATCC-ACTCGATCCAGCAAGC
583 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCT-ACCACCCTA-TCGATCCA-C-GGC
*
3770700 TTGCCGCAT-CCGTCTCTCTGGC
644 TTG-TGCATCCCGTCTCTCTGGC
3770722 TGACATAGGT
Statistics
Matches: 1938, Mismatches: 121, Indels: 71
0.91 0.06 0.03
Matches are distributed among these distances:
709 21 0.01
710 74 0.04
712 1 0.00
714 10 0.01
715 803 0.41
716 384 0.20
717 112 0.06
718 337 0.17
719 136 0.07
720 48 0.02
721 5 0.00
722 7 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (717 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACAGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATACTAGAGAA
CCTAACCGACGACATTGGGGTTCTGGCGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACAGTTTTCTAAAAAAAT
TTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAATCGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCA
TCCCGTCTCTCTGGCCAGCGTAGCGCTCACCCGTCCGCCCGGCCGCTTGTTTCGTCGGTCGACTT
AG
Found at i:3773539 original size:715 final size:713
Alignment explanation
Indices: 3771078--3773845 Score: 3830
Period size: 697 Copynumber: 3.9 Consensus size: 713
3771068 CCAGGTGCAC
* * * * * *
3771078 CATCATCGGAGAACTTGATCGACGGCATTGGGTTTTCGACGATCGAAGGGGCCGGGGGGGCTGTG
1 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGCTGTG
* *
3771143 CGCACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAAC
66 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * * * * * *
3771208 CTTGAAAACACACACCCCCCTAAAGAGCATTTTAGATTTTTCAAGTTTGCTGCCAGTAGCCATTA
131 CTCGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
3771273 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTTCGAGTTTTTA
196 AAGTGTCTGAAATGGGGACACTTTTTTCAAATCGTCACAAAATCTTGTACAC-TTCGAGTTTTTA
* * * *
3771338 GCTGATTTTTTTTATGCATGCCAACAAAAATACAACGATAACGTCTACCAAGTTTGGGGCTAAAA
260 GCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAAA
* * * *
3771403 ACCCTTCCGACAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGA
324 ACCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAAA
* *
3771468 AAACGAGTCGTCTTGCCATGCAACTTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAG
389 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*
3771533 CCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCG
454 CCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
3771598 ATCCATGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCTGCCCGTTTGCCCGCCCACCCG
519 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCC----GCCCGTCCACCCG
* **
3771663 CCCG-TTCGTTTTACCGGTTGGCTTAGGCATACGGAGTTCATTCCC-GTCTAAGATCGGATTAGA
580 CTCGTTTCG---T--CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCG-
* * * * *
3771726 CCGAAGGTTGCTGTAGCACATGCTAGGCTCGAGCATGTGCTAGTGCCACATTTTTCTTCACCGAG
638 CCCAAGG--G-TGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGG
3771791 GCACCATCGTCGGAG
700 GCACCATCG-CGGAG
* * * *
3771806 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCCAGGGGGGGTTGT
1 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCC-GGGGGGGCTGT
* * *
3771871 GCGCACATGATGTGCAATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAA
65 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * *
3771936 CCTCGACAACTCACACCCCCGTAAGGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
130 CCTCGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
3772001 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATTC-TCACAAAATCTTGTACACTTCCAGTTTTT
195 AAAGTGTCTGAAATGGGGACACTTTTTTCAAA-TCGTCACAAAATCTTGTACACTTCGAGTTTTT
3772065 AGCTG-ATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
259 AGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
3772129 ACCGCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT-TGTGAAAAATA
324 ACC-CTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCT-TGAAAAATA
* * *
3772193 GAAAACGAGTCGTCTTGCCATGCAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACA
387 AAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
** *
3772258 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTAT
452 AGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
*
3772323 CGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTA--G--TGCCCGCCCG----CCCGCT
517 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGTCCACCCGCT
* * * *
3772380 CATTTTGTCGGTTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
582 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GCCCAAGGG
* *
3772444 TTGTGGCAGCACATGCTGGGTTCGGGCATGTGCTGGTACCACATTTTTCTTCACCGGGGCACCAT
646 -TGT---AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCAT
3772509 CGC----
707 CGCGGAG
* * * *
3772512 CA------GAGAACCTGACTGGCGGCATTGGGGTTCCGGCGATCG-GGGGGTCGGGGGGG-TGTG
1 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGCTGTG
3772569 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
66 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
3772634 CTCGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
131 CTCGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * *
3772699 AAGTGTCTGAAATGGGGACACTTTTTTC-AATGGTCATAAAATCTTGTACACTAC-ACGTTTTTA
196 AAGTGTCTGAAATGGGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTCGA-GTTTTTA
* *
3772762 GCTGAATTTTTTTGTGCATGCCAACAAAAATGA-AAGGATTACGTCTA-CAAGGTTTGGGGCCAA
260 GCTGAATTTTTTTATGCATGCCAACAAAAAT-ACAAGGATCACGTCTACCAA-GTTTGGGGCCAA
* **
3772825 AACTCCTTCCGAAAAAATTTAAAAAAATC-CTGAACCGTAAAAAGTTTTGAAAATCTTGAAAAAT
323 AAC-CCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCTTGAAAAAT
* *
3772889 AAAAAAATGAGTC-TCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
386 -AAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
3772953 CAAGCCATAGAAATGGCATTGGCACACAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCT
450 CAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
** * * * * *
3773018 ATCGATCTGCGGCTTCCGCATCCCGTCTCTCTCGCCGGTGTAGTGCCTGCCCGCCCGTCCGCCTG
515 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGTCCACCCG
3773083 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGCCCAACG
580 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGCCCAA-G
* * * **
3773148 GGTAGATAGCTCATGCTGGGCTCGGGCATATGCTGGTGTCGTATTTTTCTTCACCGGGGCACCAT
644 GGT-G-TAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCAT
3773213 CGCCGGAG
707 CG-CGGAG
** *
3773221 CATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCAACGATCGAGGGGGCC-GGGGGG-TGTG
1 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGCTGTG
* * * * *
3773284 CACACAAGATGTGCGATGGGTGCTGGTACTCGACCCTTATATTAGCCCCCTATCCCTCATCAAAC
66 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
3773349 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTA
131 CTCGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
3773414 AAGTGTCTGAAATGGGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTCGAGTTTTTAG
196 AAGTGTCTGAAATGGGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * *
3773479 CTGAATTTTTTTGTGTATGCCAA-AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAC
261 CTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * * *
3773543 TCCTTCTGAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTC-AAAATCATGAAAAATAGAA
326 -CCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAATA-AA
*
3773607 AAA-GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGC-AG
389 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
** * *
3773670 CCATAAAAATGGCATTGGCACGTATAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCG
454 CCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * * *
3773735 ATCCACGGCTTGCGTATCCCGTCTCTCTGGCCGGAGCAGTGCCCGCCCGCCCATCCACCCACTCG
519 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGTCCACCCGCTCG
* *
3773800 TTTCGTCGGTTAGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGA
584 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
3773846 ACGAACCGGA
Statistics
Matches: 1841, Mismatches: 149, Indels: 115
0.87 0.07 0.05
Matches are distributed among these distances:
695 2 0.00
696 36 0.02
697 406 0.22
698 20 0.01
699 7 0.00
700 34 0.02
701 10 0.01
704 53 0.03
705 35 0.02
706 34 0.02
707 1 0.00
708 4 0.00
709 2 0.00
710 17 0.01
711 86 0.05
713 165 0.09
714 70 0.04
715 271 0.15
716 66 0.04
717 1 0.00
719 5 0.00
723 5 0.00
725 1 0.00
726 6 0.00
727 269 0.15
728 59 0.03
729 175 0.10
730 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (713 bp):
CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGCTGTG
CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
CTCGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTCGAGTTTTTAG
CTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
CCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAAAAA
ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGTCCACCCGCTCGTT
TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGCCCAAGGGTGTAG
CACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCGGAG
Found at i:3774005 original size:26 final size:26
Alignment explanation
Indices: 3773976--3774052 Score: 136
Period size: 26 Copynumber: 3.0 Consensus size: 26
3773966 GTTGACTTAG
*
3773976 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3774002 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3774028 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
3774053 GGATTGAATC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3775645 original size:26 final size:26
Alignment explanation
Indices: 3775616--3775668 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3775606 GTTGACTTAG
*
3775616 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3775642 GCATTCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3775668 G
1 G
3775669 AGCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3776976 original size:581 final size:581
Alignment explanation
Indices: 3775873--3778228 Score: 3193
Period size: 581 Copynumber: 4.0 Consensus size: 581
3775863 ATTGGACCCG
* * *
3775873 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTAGC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTATAGGTTTGC
* * * *
3775938 TGCCAGTATCCATTAAAGTGTTTGAAACGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
3776003 ACTTCAATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAAGATCACGTCTACCAG
131 ACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAG
* * * *
3776068 GTTTGCAGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCTGAACTGCAAAAACTTTTGAAAA
196 GTTTGCAGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAACTTTTGAAAA
*
3776133 CCGTGAAAAATAGAAAACGAGTCGTATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
261 TCGTGAAAAATAGAAAACGAGTCGTATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
3776198 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
326 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* *
3776263 TTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCACTCTGGCCGGCGTAGCACCCGCCCGCC
391 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCACTCTGGCCGGCGTAGCACCCGCCCGCC
*
3776328 CGCTCGTTTCGTCGGTTGGTTTAAGCATACGGAGGTCATTCCCAGTCTAAGATCAGACCGGACCG
456 CGCTCGTTTCGTCGGTTGGTTTAAGCATATGGAGGTCATTCCCAGTCTAAGATCAGACCGGACCG
3776393 AGGGTTGCGGTAGCAGGATCGACAGCAAGTAGAGGTAGACCCGATCGATCCCCCGGCCCCC
521 AGGGTTGCGGTAGCAGGATCGACAGCAAGTAGAGGTAGACCCGATCGATCCCCCGGCCCCC
* *
3776454 TATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGAATTTGAGATTTTATAGGTTTGT
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTATAGGTTTGC
3776519 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTAC
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTAC
3776584 ACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAG
131 ACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAG
3776649 GTTTGCAGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAACTTTTGAAAA
196 GTTTGCAGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAACTTTTGAAAA
3776714 TCGTGAAAAATAGAAAACGAGTCGTATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
261 TCGTGAAAAATAGAAAACGAGTCGTATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
3776779 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATAAAGATGTGCCTAAACCCAC
326 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * *
3776844 TTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCACTTTGGCCGGCATAGCACCCGCCCGCC
391 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCACTCTGGCCGGCGTAGCACCCGCCCGCC
* *
3776909 CGCTCGTTTCGTCGGTTGGTTTAAGCCTATGGAGGTCATTCACAGTCTAAGATCAGACCGGACCG
456 CGCTCGTTTCGTCGGTTGGTTTAAGCATATGGAGGTCATTCCCAGTCTAAGATCAGACCGGACCG
*
3776974 AGGGTTGCGGTAGCAAGATCGACAGCACA-TAGAGGTAGACCCGATCGATCCCCCGGCCCCC
521 AGGGTTGCGGTAGCAGGATCGACAGCA-AGTAGAGGTAGACCCGATCGATCCCCCGGCCCCC
*
3777035 TATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGAATTTGAGATTTTATAGGTTTGC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTATAGGTTTGC
*
3777100 TGTCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTAC
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTAC
3777165 ACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAG
131 ACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAG
3777230 GTTTGCAGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAACTTTTGAAAA
196 GTTTGCAGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAACTTTTGAAAA
*
3777295 TTGTGAAAAATAGAAAACGAGTCGTATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
261 TCGTGAAAAATAGAAAACGAGTCGTATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
3777360 TATGAATTTACAAGCCATAAAAATGGTATTGACACGCAGAAATATGATGATGTGCCTAAACCCAC
326 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * * * **
3777425 CTAACACCCTATCGATTCACGGCTTACGCATCCCATCTCTCTGGCCGGTGTAGTGCCCGCCCGCC
391 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCACTCTGGCCGGCGTAGCACCCGCCCGCC
* * * * * * * **
3777490 CGTTCGTTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCCAAGATCGGACCAAACCG
456 CGCTCGTTTCGTCGGTTGGTTTAAGCATATGGAGGTCATTCCCAGTCTAAGATCAGACCGGACCG
* * * ** * ** * * **
3777555 ACGGCATTG-GG-ATTCCGGCTATCAGAGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGG
521 A-GG-GTTGCGGTA-GCAGG--ATC-GA-CAGCAAGTAGAG-GT-AG-ACCCGA--T-CGA----
*
3777617 TGCTGGTACTTGGCCCATATATTGGCCCCA
569 T-C-----C----CCC-------GGCCCCC
* ** * **
3777647 TATCCCTAATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCCTTTGAGATTTTACAGGTTCAC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTATAGGTTTGC
*
3777712 TGCCAGTAGCCATTAAAGTGTTTGAAATAGGG-ACACTTTTTTCCAAAATGGTCAC-AAATCTTG
66 TGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGAACACTTTTTT-C-AAATGGTCACAAAATCTTG
* * * * *
3777775 TACACTTTC-AGTTTTTAGTTGAATGTTATTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
128 TACAC-TTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* ** * * * **
3777839 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCA
192 CCAGGTTTGCAGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAACTTTTG
* * * *
3777904 AAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTGAAGGGACC
257 AAAATCGTGAAAAATAGAAAACGAGTCGTATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
3777969 ATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
322 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
* * *
3778034 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGTCGACATAGTGCCT-GC
387 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCACTCTGG-C--C---G-GCGTAG-
* * * * * * ** * *
3778098 CCGCCCGCCCGCCCGCTCATTTCTTCGGTTGGCTTAGGTATACAGAGTTCATTCCCAGTCTTAGA
444 -CACCCGCCCGCCCGCTCGTTTCGTCGGTTGGTTTAAGCATATGGAGGTCATTCCCAGTCTAAGA
* * ** * * *
3778163 TTAGATCGGACCGAGGGTTGCGACAGCAGGATCGATAGCACA-CAGAGG-GGAACCCGATCGATC
508 TCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCA-AGTAGAGGTAG-ACCCGATCGATC
3778226 CCC
571 CCC
3778229 GGCTTGCGTA
Statistics
Matches: 1585, Mismatches: 137, Indels: 90
0.87 0.08 0.05
Matches are distributed among these distances:
581 1045 0.66
582 7 0.00
583 3 0.00
584 3 0.00
585 4 0.00
586 4 0.00
587 1 0.00
588 4 0.00
590 1 0.00
591 3 0.00
595 1 0.00
596 1 0.00
597 2 0.00
601 2 0.00
605 3 0.00
606 1 0.00
607 1 0.00
611 3 0.00
612 101 0.06
613 288 0.18
614 19 0.01
616 4 0.00
617 4 0.00
618 3 0.00
619 5 0.00
620 8 0.01
621 64 0.04
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (581 bp):
TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTATAGGTTTGC
TGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTAC
ACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAG
GTTTGCAGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAACTTTTGAAAA
TCGTGAAAAATAGAAAACGAGTCGTATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCACTCTGGCCGGCGTAGCACCCGCCCGCC
CGCTCGTTTCGTCGGTTGGTTTAAGCATATGGAGGTCATTCCCAGTCTAAGATCAGACCGGACCG
AGGGTTGCGGTAGCAGGATCGACAGCAAGTAGAGGTAGACCCGATCGATCCCCCGGCCCCC
Found at i:3780942 original size:26 final size:26
Alignment explanation
Indices: 3780906--3780958 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3780896 GTTGACTTAG
3780906 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3780932 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3780958 G
1 G
3780959 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3781786 original size:911 final size:898
Alignment explanation
Indices: 3779162--3786289 Score: 8564
Period size: 895 Copynumber: 8.0 Consensus size: 898
3779152 GTTGACTTAG
** * *
3779162 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAGGGTTGCGGCAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGA-TGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * * *
3779227 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGTCGGAGA
64 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * * *
3779292 ACCTGACCGACGGTATTGGGGTTCCGACAATC-GGGGGTCC-GGGGGCTGTGCGCACATGATGTG
129 ACCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * ***
3779355 CGATAGGTACAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCACAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
*
3779420 ACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * **
3779485 GGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCCAAATTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAGAGTTTTTAGCTGAATTTTTTT
* * * *
3779549 GTGCATGCCAAAAAAAATACAAGTATCATGACTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
389 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTC-GAAAA
* * * * * *
3779614 AATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAACATCGTGAAAAATAGAAAATGGGTCATC
453 AATTTTAAAAAATC-CAGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
3779678 TTGCCATGAAACTTCATGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * **
3779743 CATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCATAGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
3779808 CGCATCCCGTCTCTTTGGCTGACGTAGTGCCCACCCGCCTGCCCGCTTGTTTCGTCGGTTGGCTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
3779873 AGGCACACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTATG-GTC-GTAAGATC
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGG-T-TGCGACAGTAGGATC
* * * * * * * * * *
3779936 GGTAGCACGTAGAAGGGGACTCGATCGATCCCCGACTTGCGAATCTCGCCCC-CTGGCCGGCTGA
775 GGCAGCATGTAGAGGGGGACCCGCTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGACTGA
* * * *
3780000 GCGCTCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAA
840 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
3780059 G-AT-C-GA----A----C---C---G--C--ACC---GAGGGTTGCGACAGCACATGCTGGGCT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGATGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * *
3780100 CGGGC-TGGTGTTGGTGCCACATTTTTCTTCATCGGGGCACGATCGTCAGAGCATCGTCGGAGAA
66 CGGGCAT-GTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAA
* * **
3780164 CCTAACCGAT-GCTATTGGGGCTT-CGGCAATCGGGGGGGCCGGGCCGGTGTGCGCACATGATGT
130 CCTGACCGATGGC-ATTGGGG-TTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * ** **
3780227 GCGATGGGTGCTAGAACTTGGCCCTTATATTGGCCCCCTATTTCTCATCAAACCTACAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
*
3780292 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
3780357 TGGGGACACCTTTTTCAAATGGTCACTAAATCATGTACAGTTCT--AGTTTTTAGCTGAATTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-TAGAGTTTTTAGCTGAATTTTT
* * *
3780420 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGAGGCCAAAACTCCTTTCG-A
387 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCGAA
* *
3780484 AAAATTTTAAAAAATCCCA-AACCCCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
451 AAAATTTTAAAAAAT-CCAGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * *
3780548 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCACAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
3780613 GGCATTGGCATGCAGAAATATGAAGATGTACATAAACCCACCTACCACCTTATCGATCCACGGCT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
3780678 TACGCATCTCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCTCCCGCTCGTTTCGTCGGTTGGC
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * ** ** *
3780743 TTAGGCATGCGGAGTTCATTCCTAGTCTAAGATCTTACTGGACTGAA-GGTTGCGACAGTAGGAT
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-TCAAGGGTTGCGACAGTAGGAT
* * * *
3780807 CGGCAGCACGCAGAGGGGGACCCGGCT-GATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGACT
774 CGGCAGCATGTAGAGGGGGACCC-GCTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGACT
*
3780871 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
3780932 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACTGAGGGTTACGGCAGCATGTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GA-TGAGGGTTGCGGCAGCACATGCTGGG
* * * *
3780997 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCTCCATCACCGGAGCATCGCCGGAGA
64 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* *
3781062 ACCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGAGCCGGGGGAAGTGTGCGCACATGATGT
129 ACCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGG-GGTGTGCGCACATGATGT
* * *
3781127 GCGATGGGTGCTGTTACTTGGCCCTTATATTGGCCCCCAATCCCTAATCAAACCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
3781192 CACCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 CA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
** ** *
3781257 ATTTGGATGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAG-GGTTTTAGCTGAA-TTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAGAGTTTTTAGCTGAATTTTT
* * **
3781320 TTGTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAACCACAAAAAGTT
387 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA--AC----TCTT
* * * ** *
3781385 TGGCGCCAAACAATTTTAAAAAATCCAGAACCACAAAAAGTTTCACAAATTGTGAAAAATAAAAA
446 T--CG--AAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT-AGAA
* * * * * **
3781450 AATGAGTCGTCTTGCCATGAAACTTCACGTAAAGCCTTAAGGTACCATTGTATGGATTTGTAAGC
506 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
3781515 CATAAAAATGGCATTGGCATGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
571 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* *
3781580 TCCACGGCTTGCGCATCCCGTCTCTCTAGCTGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCG
636 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCG
* * *
3781645 TCGGTTGGCTTAGACATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCAAGGGTTACGAC
701 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCGAC
* * * * *
3781710 AGCAGGATCGGCAGCATGTAGAGGGGGACCCAGCT-GATCCCCGGTTTGCGCATCTCACCCCTCT
766 AGTAGGATCGGCAGCATGTAGAGGGGGACCC-GCTCGATCCCCGGCTTACGCATCCCGCCCCTCT
* * * *
3781774 GGCCGGCTGAGCGCCTGCACGCTCG-TTCTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAG
830 GGCCGACTGAGCACCCGCACGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
3781838 TCTAA
894 TCTAA
* ** *
3781843 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATAGGATCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGAT-GAGGGTTGCGGCAGCACATGCTGGG
*
3781908 CTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCAT--------CA---CCGGAGA
64 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * *
3781962 ACCTAACCGGTGGAATTGGGGTTCCGTCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGTTGTG
129 ACCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
3782027 CGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCTCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * * *
3782092 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCAATAAAATGTCTGTAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
3782157 GGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCA-AGTTTTTAGGTGAATTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAGAGTTTTTAGCTGAATTTTTTT
* * * * * *
3782221 GTGCATCCCAACAAAAATACAGGGATCATGTATACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
389 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCGAAAA
* * *
3782286 AATTTTAAAAAATCCCGAACCACAAAAAGTTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTC
453 AATTTTAAAAAATCCAGAACCGCAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
3782351 TTGCCATGAAACTTCAGCGTGAAGGCTT-ACGGACCCATTGTATGAAATTTACAAGCCATAAAAA
517 TTGCCATGAAACTTCA-CGTGAAGGCTTAAGGGA-CCATTGTATG-AATTTACAAGCCATAAAAA
* * * * * *
3782415 CGACAATT-GCATGCACAAATATGAAGATGTGCCTAAGCCGACCTTCCCACCCTATCGAT-CACG
579 TGGC-ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC-TACCACCCTATCGATCCACG
* * * * * * *
3782478 GCTGGCTGGCATACCGTTTCTCTGGCCGGCTGTACTGCCCACCC-CCCGCCTGCTCTTTTCGTCG
642 GCTTGC--GCATCCCGTCTCTCTGGCCGGC-GTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * *
3782542 GTTGGCTTAGGCATACGGAGTTCATTCCCAG-CTAAGATCGGACCAAACCAAGGGTTTCGACAGT
704 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCGACAGT
* ** * * *
3782606 AAGAT-TACAGCAT-TCAAGAGGGGGACCCGGTCGATCCCGTCCCGCTT-CTGCATCCCGCTCGC
769 AGGATCGGCAGCATGT--AGAGGGGGACCCGCTCGAT-CC--CCGGCTTAC-GCATCCCGC-CCC
* * * * * * * *
3782668 TTTGGCCAACCTGAGCGCTCTGCACGTTCATTTCGTAAGATTGAGCTTAGGCATACGGAGTTCAT
827 TCTGGCCGA-CTGAGCAC-CCGCACGCTCGTTTCGT-GGGTTGA-CTTAGGCATACGGAGTTCAT
3782733 TCCCAG--T--
888 TCCCAGTCTAA
* *
3782740 -C-TA---AG---ATT----G-----GATTGGACC-A--AGGGTTGCGGTAGCACATGCTGGGCT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGATGAGGGTTGCGGCAGCACATGCTGGGCT
* * * ** * *
3782785 CAGGCATGTGCTGGTGCCGCATTTTTGTTCACCGGGGCACCATCGTCGGAGCATCGCCAGAGAAC
66 CGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAAC
* * * * *
3782850 CTGTCCGACGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGGTGTGCGCGCATG--GTGCA
131 CTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC-
* *
3782913 TGATAGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 -GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * * * *
3782978 ACGCCCTTGAAGAGCATTTGAAATTTTACTGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
3783043 GGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTT-GAGTTTTTAGCTGAATTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAGAGTTTTTAGCTGAATTTTTTT
* * * *
3783107 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACGATGTTTGGGGCCAAAA-TCCTTCCAAAAA
389 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCGAAAA
* *
3783171 AATTTTAAAAAAT-CATGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTC
453 AATTTTAAAAAATCCA-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
3783235 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAACATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** *
3783300 CATTGGCAAACAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
*
3783365 TGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * *
3783426 AGGCATACGGAGTTCATTCCCAGTCTAAGATTAGAGCAAACCAAGGGTTGTGGCAGTAGGATTGG
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCGACAGTAGGATCGG
* * * * *
3783491 CAGCATGCAAAGGGGGACCCGGC-CGATCCGCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAG
777 CAGCATGTAGAGGGGGACCC-GCTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGACTGAG
* * *
3783555 CACCCGCACGCTCGTTTCTTGGGCTGACTTAGGCTTACGGAGTTCATTCCCAGTCTAA
841 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
3783613 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATGGAGGGTTGCGGCAACACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GAT-GAGGGTTGCGGCAGCACATGCTGGG
* * * ** *
3783678 CTCGAGCAT-TGTTGGTGTCGTATTTTTCTTCGTCGGGG-AGCCATTACAGGAGCATCGCCGGAG
64 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCA-CCATCGCCGGAGCATCGCCGGAG
* * * * *
3783741 AACTTGACCAACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGAGGGGTGTGTGCACATGATG
128 AACCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGG-GGGGTGTGCGCACATGATG
* * * **
3783806 TGCGATGGGTGCTGTTACTTAGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCAAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
* *
3783871 ACACCCCTTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
3783936 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACA-GTTCGAGTTTTTAGCTGAATTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAGAGTTTTTAGCTGAATTTTT
* *
3784000 TTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCTTTCTGAA
387 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTC-GAA
* ** * *
3784065 GAAATTTTAAAAAATCTTGAATCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCAT
451 AAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * **
3784130 CTTGCCATGAAACTTCACGAGAAGGATTAAGGGACCATTGTACAAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
3784195 GCATTGGCATGCAAAAATATAAAGATGTGCCTAAACCCACCTACC-CCTTATCGATCCACGGCTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
3784259 GCGCATCCCGTCTCTTTGGCCAGCGT-G-G--TGCCTGCCCACCCGCTCGTTTTGTCGGTTGGCT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * *
3784320 CAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGC-AGTAGTAGGATC
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCGA-CAGTAGGATC
* * * ** ** * *
3784384 AGCAGCTTGTAGAGGGGGACCCGATCGATCCTTGGCTTACGCATCCCATCCCTTTGGTC-AGCTG
775 GGCAGCATGTAGAGGGGGACCCGCTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGA-CTG
* *
3784448 AGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
3784508 GCATACAGAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-CGA-TGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
3784573 CTCGGGCATGTGTT-GTGCCGCATTTTTCTTCGTCGGGGCACCTTTGTCGGAGCATTGCCGAAGA
64 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * *
3784637 ACCTGACCGGTGGCATTGGGGTTCCGGTGATCGGGGGGACCGGGAGGGGTGTGTGCACATCATGT
129 ACCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGG-GGGGTGTGCGCACATGATGT
* * * *
3784702 GTGATGGGTGGTGGCACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* *
3784767 CACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * **
3784832 TGGGGACACTTTTTTCAAATGATCACAAAATCTCGTACAC-TTCGAGTTTTTAGCTGAATTGCTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAGAGTTTTTAGCTGAATTTTTT
* * * *
3784896 TCTGCATGCCTACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
388 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTC-GAAA
* *
3784961 AAATTTTAAAAAATCTCA-AACCGTAAAAAGCTTT-AAAAATCATGAAAAATAAAAAACGAGTCG
452 AAATTTTAAAAAATC-CAGAACCGCAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
3785024 TCGTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
3785089 GGCATTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
3785154 GGCACATCCCGTCTCT-TCGG-TGGCGTAGTGCCCGCTTGCCTGTCGGCCCGCTCGTTTCGTCGG
645 TGCGCATCCCGTCTCTCT-GGCCGGCGTAGTGCCCGC---CC-GCCCGCCCGCTCGTTTCGTCGG
* * * * * *
3785217 TTGGCTTAGGCATACGGAGTGCATTCCCAGTCTAAGATCAGATCAAACCAAGGGTTGCGGCAGCA
705 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCGACAGTA
* * * * * * * * * **
3785282 GGACCGGTAGCACGCAGAGGGGAACTCGGTCGATCCCCAGCTTACGCATCCCGCCCTTCTGGTTG
770 GGATCGGCAGCATGTAGAGGGGGACCCGCTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCG
* *
3785347 ACTGAGCACCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 ACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
3785411 GCATACGGAGTTCATTCCTAGTCTAAGATCAAACCGAATCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG-AT-GAGGGTTGCGGCAGCACATGCTGGG
* * **
3785476 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCATCGGAGA
64 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * * * *
3785541 ATCTAACCGACGGCATTGGGATTCCGGCTATCAGAGGGGCC-GGGGGGTGTGCGCACATGATGTG
129 ACCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
3785605 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGGGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
*
3785670 A--CCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
3785733 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGTTGAATTATTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAGAGTTTTTAGCTGAATTTTTTT
* *
3785797 GTGCATGCCAAAAAAAATACGAGGATCACGTCTACCAAGTTTTGGG-CAAAACTCCTTTCGAAAA
389 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCGAAAA
* * *
3785861 AATTTAAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
453 AATTTTAAAAAATC-CAGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
3785925 TTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
3785990 CATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
3786055 CGTATCCCGTCTCTCTGGCCGGCGTAGT-CCTCACCTGCCCGCCCGCTCGTTTCATCGGTTGGCT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCC-CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * **
3786119 TAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACC-GAATCGAA-GGTTACGGCAACAGGAT
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ATC-AAGGGTTGCGACAGTAGGAT
* * * * * * *
3786182 CGACAGCAT-TCAGAGGGGGACCCGATCGATCCCTGGCTTATGCATCCCACCTCTCTGGCCGGCT
774 CGGCAGCATGT-AGAGGGGGACCCGCTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGACT
* * * *
3786246 GAGCACCCGCACGCTCATTTCGTGAGTTCACTTAAGCATACGGA
838 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
3786290 TAAAAAAATT
Statistics
Matches: 5371, Mismatches: 676, Indels: 369
0.84 0.11 0.06
Matches are distributed among these distances:
869 25 0.00
870 8 0.00
871 118 0.02
872 331 0.06
873 323 0.06
874 22 0.00
875 70 0.01
876 54 0.01
877 46 0.01
878 11 0.00
879 4 0.00
880 28 0.01
881 20 0.00
882 57 0.01
883 24 0.00
884 60 0.01
885 37 0.01
886 278 0.05
887 1 0.00
889 3 0.00
890 73 0.01
891 37 0.01
892 74 0.01
893 65 0.01
894 161 0.03
895 1060 0.20
896 377 0.07
897 19 0.00
898 121 0.02
899 459 0.09
900 365 0.07
901 133 0.02
902 83 0.02
903 249 0.05
904 73 0.01
905 3 0.00
907 2 0.00
909 3 0.00
910 51 0.01
911 443 0.08
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGATGAGGGTTGCGGCAGCACATGCTGGGCT
CGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAAC
CTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCGAAAAAAT
TTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCGACAGTAGGATCGGCAGC
ATGTAGAGGGGGACCCGCTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGACTGAGCACCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:3781846 original size:26 final size:26
Alignment explanation
Indices: 3781817--3781869 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3781807 GTTGACTTAG
* *
3781817 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3781843 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3781869 G
1 G
3781870 ATCGGATAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:3783626 original size:26 final size:26
Alignment explanation
Indices: 3783590--3783639 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
3783580 GACTTAGGCT
3783590 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
3783616 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
3783640 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:3784512 original size:26 final size:26
Alignment explanation
Indices: 3784482--3784534 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3784472 GTTGACTTAG
* *
3784482 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
3784508 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
3784534 G
1 G
3784535 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:3785415 original size:26 final size:26
Alignment explanation
Indices: 3785385--3785437 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3785375 GTTGACTTAG
3785385 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3785411 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3785437 G
1 G
3785438 ATCAAACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3796320 original size:26 final size:26
Alignment explanation
Indices: 3796283--3796335 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3796273 ATTGACTTAG
* *
3796283 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3796309 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3796335 G
1 G
3796336 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:3797221 original size:26 final size:26
Alignment explanation
Indices: 3797185--3797236 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
3797175 GTTGACTTCG
3797185 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3797211 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3797237 AATTGGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3797278 original size:902 final size:902
Alignment explanation
Indices: 3795469--3806385 Score: 13259
Period size: 902 Copynumber: 12.3 Consensus size: 902
3795459 GAAAAACGGT
* *
3795469 AGCACATGCTGGGCTAGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGTC--A
1 AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
* * * *
3795532 G-A--------GAACCTGACCGACGGCATTGGGGTTTCGACGATCGAGGGGGCCGGGGGGTGTTC
66 GCATCGCTCGGGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGC
3795588 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
131 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
3795653 TCAAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
196 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
**
3795718 AGTGTCTGAAATGGGGACGTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
261 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
3795783 TGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT
326 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * * * ** *
3795848 CCTTTCGAAAAAATTTTCAAAAATCTCGAACTGTAAAAATTTTTGAAAGTCGTGAAAAATAGAAA
391 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* * * *
3795913 ATGAGTCGTCTTGCCAAGAACCTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCC
456 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
3795978 ATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
521 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * * * * *
3796043 CCACGGCTAGCGCATCCCATCTCTCTGGCCGGCGTAGTACCCACCCGCCCGTCCGCCCGTTCGTT
586 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCAGTCCGCCCGCCCGCTCGTT
* * * ** *
3796108 TCGTCGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGGTC-GAACCGGATAGACGGTTG
651 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTG
** * * * ** *
3796172 TAGTAGCAGGATCGACAGCACGTAGAGGGGGACCTGGCCGATCCCCGGCTTATGCATCCCGTCCC
715 CGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
* * ** * *
3796237 TTTGGCCGACTGAGCACCCAAACGCTCGTTTTGTGGATTGACTTAGGCATACGGAGTTCATTCCC
780 TCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * ** * *
3796302 AGTTTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGAC
845 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC-GACCGAGGGTTGCGGC
* * * * *
3796361 AGCACATGTTGGGCTCGGGAATGTGTTGGGGTCGCATTTTTCTTCGTCGGGGCACCATCGTAGGA
1 AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
* * * * *
3796426 GCCTCGCTAGGGAACCTGATCGGCGGCATTGGTGTTTCGACGATCGGGGGGGCCGAGGGGGGTGT
66 GCATCGCTCGGGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGT
* *
3796491 GCGCACATGATGTGTGGTGGGTG-TGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAA
129 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
3796554 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
194 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
3796619 AAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAATTTTTA
259 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * *
3796684 GCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGCATCATGTCTACCAAGTTTGGGGCCAAAA
324 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
*
3796749 CTCCTTCCGAAAAAATTTTAAAAAA-CTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGA
389 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGA
*
3796813 AAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
454 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
** *** *
3796878 ATATAAAAATGGCATTGGCACATATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
519 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * * *
3796943 ATCCACGACTTACGCATCTCGTCTCTCTGGCCGGTGTTGTGCCCGCCAGTCCGCCCGCCCGCTTG
584 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCAGTCCGCCCGCCCGCTCG
* * *
3797008 ATTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCATTCTAAGATCGGACC-GAGCCGAGGGT
649 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CCGAGGGT
* * * * * * * *
3797072 TGTGGTAGCAGGATCGGTAGCACGTAGACGGGGACCCGAACGATCCCAGACTTACGCATCTCGCC
713 TGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCC
* * * * * *
3797137 CCTTTGGTCGGTTGAGCACCCGCACGCTTGTTTTGTGGGTTGACTTCGGCATACGGAGTTCATTC
778 CCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * *
3797202 CCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAAATTGGACCGGACCGAGGGTTGTGGC
843 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC-GACCGAGGGTTGCGGC
* * **
3797263 AGCACATGCTGGGCTCGGGCATGTG-TGGTGCCGTATTTTTCTTTGTCGGGGCACCATCACCGGA
1 AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
* * *
3797327 GCATTGC-CGGAGAACCTGACCGGCAGGCATTGGGGTTTCGACGATCGGCGGGGCCGGGGGGGTG
66 GCATCGCTCGG-GAACCTGACCGGC-GGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTG
*
3797391 TGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAA
128 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
3797455 ACCTCAAGAACTCACACCCCCTTGAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
193 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * *
3797520 TAAAGTGTCTGAAATGGTGACACTTTTTTCAAATGGTCACAAAATCTGGTACACTTTGAGTTTTT
258 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * * * * *
3797585 TGTTGAATTTTTTTGTGCATGCCAATAAAAATACGAGGATCTCGTCTGCCAAGGTTGGGGCCAAA
323 AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * *
3797650 ACTCCTTTCC-AAAAAATTTTAAAAAATCCCGAACAGCAAAATGTTTCAAAAATTGAGAAAAATA
388 ACTCC-TTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA
*
3797714 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATA
452 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
*
3797779 AGCCATAAAAATGGCATCGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
517 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* ** * *
3797844 CGATCCACGGCTTGCGCATCTCACCTCTCTGACCGGCGTAGTGCCCGCCCGCTCGCCCGCCCGCC
582 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCAG-T---CCGCCCGCC
* * * *
3797909 CACTAGTTTCGTCAGTTGG-TGTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACC
643 CGCTCGTTTCGTCGGTTGGCT-TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
* * * *
3797973 GAGGG-T----T------A-CGGCAGCATGCAGAGGGGGA-CCGAACCGATCCTCGACTTGCGCA
707 GAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCG-ACCGATCCCCGGCTTGCGCA
* * * * * *
3798025 TCTCACCCCTCTGGTCGGCTGAGCACTCGCACGCTCGTTTCGTGGGTCGACTT-GGGATACGGAG
771 TCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
**
3798089 TTCATTCCCAGTCTAAG-AT-C-G-G---------A--C----A-T-----GACCGAGGGTTGTA
836 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGACCGAGGGTTGCG
3798129 GC
901 GC
* ** ** *
3798131 AGCACATGCTAGGCTTAGGCATGTGTTCATGCCGCATTTTTCTTCGTCGGGGCACAATCGTCGGA
1 AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
* * * *
3798196 GCAACGCT-GGAGAACCTGACCGGTGGCATTGGGTTTCCGATGATCGGGGGGGCCGGGGGGTGTG
66 GCATCGCTCGG-GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTG
* * *
3798260 CGCACATGATGTGTGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAAC
130 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
3798325 CTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATTA
195 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * *
3798389 AAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTTGAGTTTTTAG
260 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * * *
3798454 CTGAATTTTCTTGTGCATGCGAACAAAAATACAAGGATCACATCTACCCAGTTTGGGGCCAAAAC
325 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* **
3798519 TCCTTTCC-AAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGA
390 TCC-TTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGA
*
3798583 AAACGAGTCGTCTTGCCATGTAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
454 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*** * *
3798648 CCATAAAAATGGCATTGGCACATAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCG
519 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
** * *
3798713 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCTACGTAGTGCCCG-C---CCGCCCGCCCACTCA
584 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCAGTCCGCCCGCCCGCTCG
* * * * * *
3798774 TTTCTTCGGTTGGCGTAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCGGACTGAGGCTT
649 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
** * ** *
3798839 -ATG-A-CAGCAT-----GCA---A-AGGGGGACCCGGTCGATCCCCGGCTTGCGCATCTCGCCC
714 GCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
* * ** * *
3798892 CTCTAGCTGGCTGAGCACCAACATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
779 CTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * *
3798957 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACATGATCGAGGGTTGCGAC
844 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGAC-CGACCGAGGGTTGCGGC
** * * *
3799017 AGCACATG-TAGGGCTCGGGCATGTGTTCATGTCGCATTTTTCTTCGTCGAGGCACCATCGCCGG
1 AGCACATGCT-GGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGG
* * * * * *
3799081 AGCAACG-TCGAAGAACCTGACTGGCAGCATTGGGGTTTC-ATCGATC-GGGGGG-TGGGGGGTG
65 AGCATCGCTCG-GGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTG
* * *
3799142 TGCGCAAATGATGTACGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
128 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
3799207 ACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTAACAGGTTTGCTGCCAGTAGCAAT
193 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
3799272 TAAAGTGTCTGAAATGGGGACACTTTTTTTGAAATGGTCATAAAATCTTGTACACTTCGAGTTTT
258 TAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
3799337 TAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATAG-CTACCAAGTTTGGGGCCA
322 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA-CGTCTACCAAGTTTGGGGCCA
* * **
3799401 AAAGTCCTTCCGAAAAAATTTTAAAAAATCCCGAACGGCAAAAAGTTTCAAAAATTATGAAAAAT
386 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
* *
3799466 AGAAAACGAGTCGTCTTGCCAAT-AAACTTCACGAGAAGGTTTAAGGGACCATTGTATGAATTTA
451 AGAAAACGAGTCGTCTTGCC-ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * **
3799530 CAAGCTAGAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCATGCT
515 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
3799595 ATCGATCTACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCA-TCCACCTGCCC
580 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCAGTCCGCCCGCCC
* * * * ** *
3799659 GCTCGTTTTGTCAGTTGGCTTAGACATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACTGA
644 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
* * * * * * * *
3799724 AGGTTGCGGTAGCAGTATCGACAGCACATAGAAGGGGACTCAACCGATCCCCGACTTGCGCATCC
709 GGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC
* *
3799789 CGCCCCTCTGGTCGGCTGAGAACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
774 CGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* ** * *
3799854 ATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGC
839 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGAC-CGACCGAGGGTTGCGGC
*
3799919 AGCACATGCTGGGCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCG-CTGGGGCACCATCGTC-G
1 AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGG
* *
3799982 -G-A--------GAACCTGACCGGCAGCATTAGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGT
65 AGCATCGCTCGGGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGT
* * * *
3800037 GTGCACATGGTGTGTGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAA
129 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
*
3800102 CCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
194 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
3800166 AAAGTGT-TCGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
259 AAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
*
3800230 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
323 AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * ** **
3800295 ACACCTTCCGAAAAAATTTAAAAAAATCCTGAACCAAAAAAAGTTTTGAAAATCGTGAAAAATAG
388 ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAG
* * ** * *
3800360 AAAACGAGTTGTCTTGCCATGAAACTTCACGTCAAGAATTAAGGCACCATTGTAAGAATTTACAA
453 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * * * *
3800425 GCCATAAAAATGGCATTGGCATGCAGAAATATGATGATGTACCAAAACCCACCTATCACTCTATC
518 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* *
3800490 GATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGAAGTGCCCG-CA---CGCCCGCCCGCTC
583 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCAGTCCGCCCGCCCGCTC
* * * ** *
3800551 GTTTCATCGATTGGTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGT
648 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGT
* * * * *
3800616 TGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCTCGGCTTACGCAACCCG-C
713 TGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCC
* * *
3800680 CCTTTGGCCGGCTGAGCACCCGCACGCTCGTTTGGTGGGTTGAC-TAGGCGTACGGAGTTCATTC
778 CCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * *
3800744 CCAGTCTAAG-AT-C-G-G---------A--C------TGGACC-A---TGGGTTACAGC
843 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGACCGAGGGTTGCGGC
** * *
3800779 AGCACATGCTGGGCTTTGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCATCGGA
1 AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
* * * * *
3800844 GCATCG-TCGGAGAACCTGACCGGCAGCTTTGGGATTCCGGCGGTC-GGGGGGCCGGGGGGTGTG
66 GCATCGCTCGG-GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTG
3800907 CGCACATGATGTGCGATGGGAT-CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
130 CGCACATGATGTGCGATGGG-TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
3800971 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
194 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
3801036 AAAGTGTCT-AAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTA
259 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * *
3801100 GCTGAATTTTTTTGTGCAAGCCAAGAAAAATACAA-G---A-----A--AAGATTGGGGCTAAAA
324 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
*
3801154 CTCCTTCC-AAAAAGATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAG
389 CTCCTTCCGAAAAA-ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAG
3801218 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
453 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *
3801283 GCCCTAAAAATGGCATTGGCATGCAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTATC
518 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
3801348 GATCCACGGCTTGCGCATCCCGTCTCTCT---AGTC--AAT----G-TAGT--GCCCGCCCGCTC
583 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCAGTCCGCCCGCCCGCTC
* * * ** **
3801401 GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACTAGATGGAGGGT
648 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGT
* * * * * * *
3801466 TGCAGCAACAGGATTGGCAACACGCAGAGGGGGACCC-AGTCGATCCCCGGCTTGCGCATCCCGC
713 TGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGC
* * * *
3801530 CCCTCTGGCCGACTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGCGTTGATT
777 CCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * *
3801595 CCCAGTCTAACCGTAAGGAGTTCATTCCCAGTCTAAGATCT-TACCGGACCGAGGGTTGTGGC
842 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-TGGACC-GACCGAGGGTTGCGGC
* * *
3801657 AGCACATGCCGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGTCGGA
1 AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
* * * * * *
3801722 GCATCGC-CGGAGAACCTGACTGACGGCATTGGGGTTCCGGCGTTCGGGAGAGCCGGGGGGTGTG
66 GCATCGCTCGG-GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTG
* *
3801786 TGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAAC
130 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * *
3801851 CTCGAGAACTCACACCCCCTTAAAAACCATTTGAGATTTTACAGGTTTGCTCCCAGTAGCCATTA
195 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* **
3801916 AAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTATAGTTTTTAG
260 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * *
3801981 CTGAATTTTTTTGTGCATGCC-AACAAAATACAAGGATGACCTCTACCAAGTTTGGGGACAAAAC
325 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * * **
3802045 CCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATAATGAAAAATAGAA
390 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* *
3802110 AATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
455 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
3802175 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
520 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * *
3802240 TCCATGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGT
585 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCAGTCCGCCCGCCCGCTCGT
* * * * **
3802305 TTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCAGACCGAGGGTCA
650 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
* * * * * * *
3802370 CGGCAGCAAGATCGGTAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGTATCCTGCCCC
715 CGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
* * *
3802435 TCTGGCCGGCTGAGCACCTGCACGCTCGTTTCGTGTGTTGACTTAGGCATAGGGAGTTCATTCCC
780 TCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
3802500 AGTCTAAG-AT-C---G-T-A----C---C---------A--GACCGAGGGTTGCGGC
845 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGACCGAGGGTTGCGGC
* ** **
3802533 AGCACATGCCGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGTCGGGGCACCATCACCGGA
1 AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
* *
3802598 GCATCGC-CGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTG
66 GCATCGCTCGG-GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTG
* * *
3802662 CGCACATGATGTGCGATGGGTTCTGGTACTTGGCCATGATATTGGCCCCCTATCCCTCATCAAAC
130 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * * *
3802727 CTCGAGAACTCACAACCCCTTAAAGAGCATTCGAGATTTTATAGGTTTGCTGCCAGTACCCATTA
195 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
3802792 AAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
260 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* ** * * *
3802857 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAACGATCATATCTAGCAAGTTTTGGGCCAAAAA
325 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * * * ** *
3802922 TCCTTCTGAAAAAATTTTAAAAAATCCTGAGCCGTATAAAGTTTTGAAAATCATGAAAAATAGAA
390 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* * * *
3802987 AACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTCTGAATTTACAGGC
455 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * * * *
3803052 TACAAAAATGTCATTGGCATGCAGAAATATTAAGATGTGCCTAAACCCACCTACCACCCTACCGA
520 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * * * * * * *
3803117 TCCACGGCTTGCGGATCTCGTCTATCTTGCTGGTGTAGTGCCCGCCTGCCCACCCACCTGCTCGT
585 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCAGTCCGCCCGCCCGCTCGT
* * * *
3803182 TTCATCTGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGAGTTG
650 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
** ** ** * * * *
3803247 CGACAGCAGGATCGGCAGCACGTAGAGGTAGACCCGATTGATCCGCGGCTTACGTATCCCACCCC
715 CGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
* * * *
3803312 TCTGGCCGGTTGAGCACCTGCACGCTCGTTTCGTGGGTTGATTTAGGCATACAGAGTTCATTCCC
780 TCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* *
3803377 AATCTAAG-AT-C--AG---------A--C------TGGACC-A---AGGATTGCGGC
845 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGACCGAGGGTTGCGGC
* *
3803410 AGCACATGCTGGGCTCAGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGA
1 AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
** * ** * * * * **
3803475 GCATCG-TCAAAGAACTTGACCACCGACGTTGGGGTTCTGACGATTGGACGGGCCGGGGGGGTGT
66 GCATCGCTC-GGGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGT
* * * **
3803539 GTGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCTTGCCCCTCATCAAA
129 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
3803604 CCTCAAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
194 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
3803669 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAA
259 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * ** *
3803734 GCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACAACTAACAAGTTTGGGGCCAAAA
324 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * * * * *
3803799 ATCCTTCCGAAAAGATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAATTTGTGAAAAATAAA
389 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGA
*
3803864 AAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
454 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * *
3803929 CCATAAAAATGGCATTGGCGTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATTG
519 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * *
3803994 ATCCACGGCTTGCGCTTTCCGTCTCTCTGGCCGGC-TAGTGCCCGCCCGCCCGTCCACCCGCCCA
584 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCAGTCCGCCCG--C-
* * * *
3804058 CCGTTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGAACC
642 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
* * * *
3804123 GAAGGTTGCGGTAGCAGGATCGGCAGCACGCATAGGGGGACCTGACCGATCCCCGGCTTGCGCAT
707 GAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
** * * * * **
3804188 CCTACCCCTCTGGCTGGCTGAGCACCAGCACGCTCATTTCGCGGGTTGACTTAGGCATATAGAGT
772 CCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * * ** * *
3804253 TCATTCCTAGTCTAAACATACAGAGTTCATTCCCAGTCTAAGATCGGATCAAATCGAGGGTTGTG
837 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGA-CCGACCGAGGGTTGCG
*
3804318 AC
901 GC
* *** * *
3804320 TGCACATGCTGGGCTCGGGCATGTGTTGGTGTTACATTTTTCTTCGCCGGGGCACCATCGCCGGA
1 AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
* * * * *
3804385 GCATCG-ACGAAGAACCTGACCAGCGACATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTG
66 GCATCGCTCG-GGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTG
* * * * *
3804449 CGCACATAATATGCGATGGGTTCTAGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAAC
130 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * *
3804514 CTCGAGATCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCTATTA
195 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
3804579 AAGTGTCTGAATTGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
260 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * *
3804644 CTGAATTTTTTTGTGCATGCCAAAAAAAGTACAAGGATCACGTCAACCAAGTTTAGGGCCAAAAA
325 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * *
3804709 TCCTTTC--AAAAATATTTAGAAAATCCCGAACCACAAAAAGTTTCAAAAATCTTGAAAAATAGA
390 TCCTTCCGAAAAAAT-TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGA
3804772 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
454 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * *
3804837 CCATAAAAATGGCATTGGCGTGCAGAAATATGATGATGAGCCTAAACCCACCTACCACCCTATCG
519 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
3804902 ATTCACGGCTTGCGCTTCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGTCCAACCGCCCA
584 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCA---GT----CCGCCCG
* * * * * *
3804967 CCCGTTCATTTCGTCAGTTAGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGAAC
641 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* * * * *
3805032 CGAAGGTTGTGGCAGCAGGATCGACAGCAC-TCATAGGGGGACCCGACCGATCCCCGGCTTGCGC
706 CGAGGGTTGCGGTAGCAGGATCGGCAGCACGT-AGAGGGGGACCCGACCGATCCCCGGCTTGCGC
* * * * **
3805096 ATTCCGCCCCTCTGGCCGACTGAGCACCCACACGCTTGTTTTATGGGTTGACTTAGGCATACGGA
770 ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * *
3805161 GTTCATTCACAGTGTAAGCATACGGAGTTCATTCCCAATCTAAGATTGGACCGGACCGAGGGTTA
835 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC-GACCGAGGGTTG
3805226 CGGC
899 CGGC
* * * *
3805230 AGCACATGCTGGGCTCGGGCATGTGTTGGTGTCACATTTTTCTTCGCCGGGGCACCATCG-CTTG
1 AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GG
* * *
3805294 AGCATCG-GCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGAGGGGGTG
65 AGCATCGCTCG-GGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTG
* *
3805358 TGCGCACATAATGTGCGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
128 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * * *
3805423 ACCTCGAGATCTCACACCCCCTTAAAGAGCTTTTGAGATTTTATAGGTTTGCTGCCAGTAGCGAT
193 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
3805488 TAAAGTGTCTGAATTGGGGACAC-TTTTTCAATTGGTCACAAAATCTTGTACACTTCGAGTTTTT
258 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* *
3805552 AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAA
323 AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * *
3805617 AATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCCTAAAAAATAG
388 ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAG
3805682 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
453 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *
3805747 GCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATC
518 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
3805812 GATCCACGGCTTGCGCATCCCGTCTCTCTCGCCGACGTAGTGCCCGCCCA-CCCGCCCGCCCTCT
583 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCAGTCCGCCCGCCCGCT
* * * *
3805876 CGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGG
647 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG
* * * * * * **
3805941 TAGCGGTAGCAGGATCGACAACACGTAGAAGGAGACCC-AGCCGATCCCCGGCTTGTGCATCTTG
712 TTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCG
* * * *
3806005 CCGCTCTGGCCGGCTGAGCACCCGCATGCTTGTTTCGTGTGTTGACTTAGGCATACGGAGTTCAT
776 CCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
3806070 TCCCAGTCTAAG-AT-C-G-G---------A--C------T--A--GACCGAGGGTTGCGGC
841 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGACCGAGGGTTGCGGC
* * *** *
3806107 AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCCTCGTCAATGCACCATCGTCGGT
1 AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
* * * * * * * * *
3806172 GTATCG-TCGAAGAAGCTGATCGACGGCATTGGGGTTTCGATGATCGAGGGGGTCGGGGGGTGTG
66 GCATCGCTCG-GGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTG
* *
3806236 CGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCTATATTGGCCCCCTAC
130 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC------T------TATATTGGCCCCCTAT
* * * *
3806301 CCCTCGTCAAACCCCAAGAACTCACA-CCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGC
183 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
3806365 CAGTGGCCATTAAAGTGTCTG
248 CAGTAGCCATTAAAGTGTCTG
3806386 CACGCCAACA
Statistics
Matches: 8740, Mismatches: 1028, Indels: 519
0.85 0.10 0.05
Matches are distributed among these distances:
849 3 0.00
850 121 0.01
851 41 0.00
852 26 0.00
853 3 0.00
855 3 0.00
856 1 0.00
857 5 0.00
858 209 0.02
859 135 0.02
860 97 0.01
861 4 0.00
862 2 0.00
863 6 0.00
864 1 0.00
865 5 0.00
866 1 0.00
867 435 0.05
868 94 0.01
869 219 0.03
870 65 0.01
871 31 0.00
873 5 0.00
874 2 0.00
875 3 0.00
876 373 0.04
877 666 0.08
878 547 0.06
879 161 0.02
880 77 0.01
881 15 0.00
882 3 0.00
883 3 0.00
884 261 0.03
885 84 0.01
886 440 0.05
887 97 0.01
888 158 0.02
890 287 0.03
891 40 0.00
892 373 0.04
893 75 0.01
894 113 0.01
895 81 0.01
896 2 0.00
897 2 0.00
898 3 0.00
899 4 0.00
900 5 0.00
901 85 0.01
902 1075 0.12
903 674 0.08
904 10 0.00
905 37 0.00
906 5 0.00
907 72 0.01
908 203 0.02
909 257 0.03
910 553 0.06
911 371 0.04
912 6 0.00
913 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
GCATCGCTCGGGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGC
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCAGTCCGCCCGCCCGCTCGTT
TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC
GGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
CTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGACCGAGGGTTGCGGC
Found at i:3798969 original size:26 final size:26
Alignment explanation
Indices: 3798939--3798991 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3798929 GTTGACTTAG
3798939 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3798965 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3798991 G
1 G
3798992 ATCGAACATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3799877 original size:26 final size:26
Alignment explanation
Indices: 3799841--3799893 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3799831 GTTGACTTAG
3799841 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3799867 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3799893 G
1 G
3799894 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3804279 original size:26 final size:26
Alignment explanation
Indices: 3804243--3804293 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
3804233 TTGACTTAGG
* *
3804243 CATATAGAGTTCATTCCTAGTCTAAA
1 CATACAGAGTTCATTCCCAGTCTAAA
3804269 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
3804294 GATCGGATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.31
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAA
Found at i:3805204 original size:26 final size:26
Alignment explanation
Indices: 3805152--3805204 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3805142 GTTGACTTAG
* *
3805152 GCATACGGAGTTCATTCACAGTGTAA
1 GCATACGGAGTTCATTCACAATCTAA
*
3805178 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCACAATCTAA
3805204 G
1 G
3805205 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAATCTAA
Found at i:3806299 original size:13 final size:12
Alignment explanation
Indices: 3806265--3806296 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
3806255 GTGCCGGTAC
*
3806265 TTGGCCCTTATA
1 TTGGCCCCTATA
3806277 TTGGCCCCTATA
1 TTGGCCCCTATA
3806289 TTGGCCCC
1 TTGGCCCC
3806297 CTACCCCTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.34, G:0.19, T:0.34
Consensus pattern (12 bp):
TTGGCCCCTATA
Found at i:3806916 original size:26 final size:26
Alignment explanation
Indices: 3806880--3806930 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3806870 TTGACTTAGG
*
3806880 CATACAGAGTTCATTCCTAGTCTAAA
1 CATACAGAGTTCATTCCCAGTCTAAA
3806906 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
3806931 GATCGAATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAA
Found at i:3807816 original size:26 final size:26
Alignment explanation
Indices: 3807780--3807832 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3807770 GTTGACTTAG
3807780 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3807806 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3807832 G
1 G
3807833 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3808711 original size:26 final size:26
Alignment explanation
Indices: 3808681--3808733 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3808671 GTTGACTTAG
3808681 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3808707 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3808733 G
1 G
3808734 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3808730 original size:901 final size:903
Alignment explanation
Indices: 3806384--3810266 Score: 5127
Period size: 901 Copynumber: 4.3 Consensus size: 903
3806374 TTAAAGTGTC
* ** *
3806384 TGCACGCCAACAAAAATACAAGGATCACAACTAACAAGTTTGGGGCCAAAAATCCTT-CAAAAAA
1 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAATCCTTCCAAAAAA
* * * * *
3806448 ATTTTAAAAATTCCCGAACTGCAAAAAGTTTCAAAATTTGTGAAAAATAGAAAACGAGTCATCTT
65 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
*
3806513 GCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCA
130 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
3806578 TTGGCATGCAGAAATATGAAGATGTGCCTAAAACCACCTACCACCCTATCGATCCACGGCTTGCG
195 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
3806643 CTTCCCATCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGTCCACCCGCCTACCCGTTCGTTTCGT
260 CATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCG----CCCG----CCCGCTCATTTCGT
** * * * * * **
3806708 CAGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAG-ACCAAACCGAAGGTTGTGGC
317 TGGTTGGCTTAGGCATACAGAGTTCAATCCCAGTCTAAGATCAGAACCAGACCGAGGGTTGCAGC
* * * **
3806772 AGCAGGAAT-GGTAGCACGCATAGGGGGACCCGACCGATCCCCGGCTTACGCATCCTACCCCTCT
382 AGCAGG-ATCGATAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCT
* * *
3806836 GGCTGGCTGAGCA-CCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAG
446 GGCCGGCTGAGCACCCA-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * *
3806900 TCTAAACATACAGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGTGACAGCACATG
510 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCACATG
* * * **
3806965 CTGGGCTTGGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATTGTCGGAGCATCGTC
575 CTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACC
* * * * *
3807030 GAAAAACCTA-ACTGACGGCATTGGGGTT-TCGGCGATCGGGGAGGCCGGGGGGGTGTGCGCACA
640 GGAGAACC-AGACCGACGACATTGGGGTTCT-GGCGATCGGGGGGGCC-GGGGGGTGTGCGCACA
3807093 TGATGTGCGATGGGAT-CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
702 TGATGTGCGATGGG-TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
*
3807157 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
766 GAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
3807222 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTTGAGTTTTTAGCTGAA
831 TCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
*
3807287 TATTTTTG
896 TTTTTTTG
* ** * * *
3807295 TGCACGCCAACAAAAATACAAGGATCGTGTCTACCAAGTTTGGGGCCAAAAGTCCTTTCGAAAAA
1 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAATCCTTCCAAAAAA
* * * * * * *
3807360 ATTTTAAAAAATCTTGAACCGCAAAAAGATTCGAATATCGTGAAAAATAAAAAATGAGTCGTCTT
65 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
* *
3807425 TCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
130 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
3807490 TTGGCATGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTG
195 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * **
3807555 CATCCCGTCTCTCTGGCCGATGTAATGCCCACCCGCCTGCCCGCCTACTC-TTTCGTTGGTTGGC
260 CATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTTGGTTGGC
* * * * *
3807619 TTAGGCAAACAGAGTTC-ATTCCAGTCTAAGAT-TGAACCAGACTGAGGGTTGCAGTAGCAGGAT
325 TTAGGCATACAGAGTTCAATCCCAGTCTAAGATCAGAACCAGACCGAGGGTTGCAGCAGCAGGAT
* * * *
3807682 CGGTAGCATGCAGTGGGGGACCCGACCGATCCCCGG-TTGCGCATCCCTCCCCTCTGGCCGGCTG
390 CGATAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTG
* * *
3807746 AGCACCCGCACGCTCATTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
455 AGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * *
3807811 TGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTAGCGGCAGTACATGCTGGGCTCGG
520 CGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGG
* *
3807876 GCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATTGTCGGAGCATCACCGGAGAACCAG
585 GCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCAG
** * * * *
3807941 ACCGGTGACATTGGGGTTATGGCGATTGGGGGGGCCGGGGGGTTTGCACACATGATGTGCGATGG
650 ACCGACGACATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* * *
3808006 GTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAATCCCC
715 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
3808071 TTAAAGAACATTAGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGAGGAC
780 TTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
3808136 ACTTTTTTCAAATGATCACAAAATCTTGTACACTTTGTGTTTTTGGCTGAATTTTTTTG
845 ACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
3808195 TGCATGCCAACAAAAATACAAGGATCACGTCTCCCAAGATTGGGACCAAAAATCCTTCCGAAAAA
1 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-CCAAAAATCCTTCCAAAAAA
* *
3808260 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATAGTG-AAAATAGAAAATGAGTCATCTT
65 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
* *
3808324 ACCAT-AATACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
130 GCCATGAA-ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
3808388 ATTGGCATGCAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
194 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * *
3808453 GCATCTCGTGTCTGTGACCGGTGTAGTGTCCGCCCGCCCGCCCGCCCGCTCATTTTGTTGGTTAG
259 GCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTTGGTTGG
* * *
3808518 CTTAGGCATATAGAGTTCAATCCCAGTCTAAGATCAG-ACCAGGCCGAGGGTTGCAGCAGCAAGA
324 CTTAGGCATACAGAGTTCAATCCCAGTCTAAGATCAGAACCAGACCGAGGGTTGCAGCAGCAGGA
* * *
3808582 TTGATAGCATGCAGAGGGGGACCCGACCGATCCTCGG-TTACGCATCCCGCCCCTCTGGCCGGTT
389 TCGATAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCT
*
3808646 GAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
454 GAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * *
3808711 ATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
519 ACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCG
* * * ** * *
3808776 GGCATGTGTTTGTGTCGTATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCACCGGAGAACCT
584 GGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCA
* * * * * *
3808841 GATCGACGGCATTGGGGTTCTGGCGATCAGGGGGGTCAGGGAGGTGTGCGTACATGATGTGCGAT
649 GACCGACGACATTGGGGTTCTGGCGATC-GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* * *
3808906 GGGTGCTGGTACTTGGCCCTTGTATT-GACCCCTATCCCTCATCAAACCTCGAGAACTCACACCG
713 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
3808970 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
778 CCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
3809035 ACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTG
843 ACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
3809096 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGTGCCAAAAATCCTTTCAAAAAAA
1 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAATCCTTCCAAAAAAA
** * *
3809161 TTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTCAAAAATAGAAAACGAGTCTTCTTG
66 TTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
**
3809226 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCGC
131 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
3809291 TGACATGCAGAAATATGAAGATGGGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGC
196 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * ***
3809356 TTCTCGTCTCTCTGG-C-------T---------------------CTCGTTTCATCAATTGGCT
261 ATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTTGGTTGGCT
** * * * * * * * * * *
3809392 TAGGCATATGGAGTTGATTCCCAGTCTAAGATC-GTATCGGGCCGCA-GGTTACGGTAGTAGGAT
326 TAGGCATACAGAGTTCAATCCCAGTCTAAGATCAGAACCAGACCG-AGGGTTGCAGCAGCAGGAT
* * *** * * * * *
3809455 CGATAGCATGTAGAGGGGGACCTGGTTGATCCTCGGCCTGCGCATCCTGCCCCTCTGGCCGGTTG
390 CGATAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTG
* * *
3809520 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTTTAAGCATA
455 AGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * * *
3809585 CGAAGTTAATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTTCGACAGCACATGCTGGGCTCGG
520 CGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGG
* * * *
3809650 GCATGTGTTGGTGACGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTG
585 GCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCAG
* * * * *
3809715 ACCGGCGACATTGGGGTTCCGGCGATCAGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGT
650 ACCGACGACATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* * *
3809780 TTGCTGGTACTTGGCCCTTATATTGGCCTCGTATCCCTCATCAAACCTCGAGAACTCACACCCCC
715 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
3809845 TTAAAG-ACAATTTGAGATTTTACAGG-TTGCTGCAAGTAGCCATTAAAGTGTCTGAAATGGGGA
780 TTAAAGAAC-ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
3809908 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCATTTTTTAGCTGAATTTTTTTA
844 CACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
3809968 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTAGGGGCAAAAACTCCATCCAAAAAC
1 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAA-TCCTTCCAAAAAA
* *
3810033 ATTTTAAAAAAT-CTCGAACCGCAAAAACTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
65 ATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCT
3810097 TGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGC
129 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
3810161 ATTGGAACAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTT
194 ATTGG--CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
3810224 GCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCTGCCCGCCCGC
257 GCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGC
3810267 GATGGTGGAC
Statistics
Matches: 2630, Mismatches: 296, Indels: 109
0.87 0.10 0.04
Matches are distributed among these distances:
871 1 0.00
872 390 0.15
873 378 0.14
874 3 0.00
880 1 0.00
893 1 0.00
898 2 0.00
899 183 0.07
900 378 0.14
901 868 0.33
902 125 0.05
903 26 0.01
904 4 0.00
908 4 0.00
911 51 0.02
912 215 0.08
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (903 bp):
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAATCCTTCCAAAAAAA
TTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTTGGTTGGCT
TAGGCATACAGAGTTCAATCCCAGTCTAAGATCAGAACCAGACCGAGGGTTGCAGCAGCAGGATC
GATAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGA
GCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
CATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCAGA
CCGACGACATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
Found at i:3809591 original size:26 final size:26
Alignment explanation
Indices: 3809554--3809606 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3809544 GTTGACTTAG
* * * *
3809554 GCATACGGAGTTCATTCTCAGTTTAA
1 GCATACGAAGTTAATTCCCAGTCTAA
3809580 GCATACGAAGTTAATTCCCAGTCTAA
1 GCATACGAAGTTAATTCCCAGTCTAA
3809606 G
1 G
3809607 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTAATTCCCAGTCTAA
Found at i:3811152 original size:26 final size:26
Alignment explanation
Indices: 3811116--3811168 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3811106 GTTGACTTAG
3811116 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
3811142 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
3811168 G
1 G
3811169 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:3813186 original size:862 final size:859
Alignment explanation
Indices: 3811399--3814552 Score: 3493
Period size: 862 Copynumber: 3.6 Consensus size: 859
3811389 AAGTGTTCGG
* * * *
3811399 AATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTT
1 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTT
* * * *
3811464 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAA
66 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * *
3811529 AAAATTTTAAAAAATC-CTGAACCGCAAAAAGTTTTAAAAATCCTGAAAAATAGAAAACGAGTTG
131 AAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
3811593 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
195 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * *
3811658 GGCATTGGCATGCAGAAATATGAAGAT-TGCCTAAACCCACTACCCACCC-ATCGACGCCACGGC
260 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCCCTA-CCACCCTATCGA-TCCACGGC
* * * *
3811721 TTGTC-CATCC-GTCTCTCTGGTCGGCGTAGTGCCCTACCGCCGCGTGTCGTTTCATCGTTTGGC
323 TTG-CGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCTCCCGCC-CG-CTCGTTTCATCGGTTGGC
* * *
3811784 TTAGGCATACGAAGTTCATTCCCCAGTCTAAGATCGAACCTACCAGACT-GA-GGTTGTGATAGC
385 TTAGGCATACGGAGTTCATT-CCCAGTCTAAGATCG-A-C-ACCAGACTCAAGGGTTGTGACAGC
* * *
3811847 A-GATCGACAACACATA-AGAGGGGGACCGA-CGAT-CCCGTCTTGCGCAT-CCGCCCCT-TGGC
446 AGGATCG-GAA-GCATACAGAGGGGGACCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * * ** * * *
3811906 TGGCTGAGCACACGTACGCTAGT-TTC--GTATGGTT--GACT-TAGGCATAACGGCAGTTCATT
509 CGGCTGAGCACCCGCACGGTAGTAGTCGAGT-TCATTCCCAATCTAAGCAT-ACGG-AGTTCATT
* *
3811965 CCCAGTCTATAGATCGGGACTGGAACCACAAGGGTTGTGCCAGCACTGCCTGGGCTCGGGCATGT
571 CCCAGTCTA-AGATCAGGACTGG-ACC-C---------G-CA-CA-TG-CTGGGCTCAGGCATGT
* * * *
3812030 GTTGGTGCTGTATTTTTCATCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGAC
620 GTTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCAGAGCATCACCGGAGAACCTGACTGAC
* * * *
3812095 GGCA-TTGATGTTCCAGCAT-------TGGGGGTGTGCACACATGATGTACGATGGGTGCTGGTA
685 GGCATTTG-GGTTCCAG-ATCGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
**
3812152 CTTGGCCCTTATATTGGCCCCCTATCCCTTTTCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
748 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
3812217 ATTTGAGATTTTACAGTTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
813 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
3812264 AATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTT
1 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTT
* * * * **
3812329 TTGTGCATGCCGACAAAAATACAAGGATTATGTCTAACAAGTTTGGGGCTAAAACTCCTTTCAAA
66 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCC-TTCCGA
* * *
3812394 AAAAATTTT-AAAAATCTCGAAAC-AAAGAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTC
130 AAAAATTTTAAAAAATCTCGAACCGTAA-AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
3812457 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTA-GAGCCATAAAAA
194 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
3812521 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCCCTACCACCCTATCGATCCACGACG
259 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCCCTACCACCCTATCGATCCACGGCT
* *
3812586 TGCGCATCCTGTCTCTCTGGCTGGCGTAGTGCCCTCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
324 TGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCTCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* *
3812651 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACT-AAGGGTTGTGATAGTAGGATCGG
389 GCATACGGAGTTCATTCCCAGTCTAAGATCGACACCAGACTCAAGGGTTGTGACAGCAGGATCGG
** * * *
3812714 AAGCATGTAGAGGGGGACCCAGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAAC
454 AAGCATACAGAGGGGGACCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
*
3812779 ACCCGCACGGTAGTAAGTCGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCTAGTCTAAG
518 ACCCGCACGGTAGT-AGTCGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAG
*
3812844 ATC-GGACTGGA-CCGCACATGCTGGGCTCAGGCATATGTTGGTGCCGTATTTTTCTTCACCGGG
582 ATCAGGACTGGACCCGCACATGCTGGGCTCAGGCATGTGTTGGTGCCGTATTTTTCTTCACCGGG
** * *
3812907 GCACCATCGTCAGAGCATCGTCGGAGAACTTGACTGACGACATTTGGGTTCCGATGATCGGGGGG
647 GCACCATCGTCAGAGCATCACCGGAGAACCTGACTGACGGCATTTGGGTTCC-A-GATC--GGGG
*
3812972 GCCGGGGGGTGTGCGCACATGATGTGCCATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCT
708 G-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCT
* *
3813037 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGTT
771 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
3813102 GCCAGTAGCCATTAAAGTGTTTGA
836 GCCAGTAGCCATTAAAGTGTCTGA
* * *
3813126 ACTGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTGGAGTTTTTAGCTAAATTTTT
1 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTT
* * * * *
3813191 TTGTGCATACGAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
66 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * *
3813256 AAAATTTTAAAAAATCTTGAACCGTAAAAGGTTTCAAAAATCTTGAAAAATAAAAAACGAGTCGT
131 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
3813321 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATTAAAATG
196 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * ** * *
3813386 AAATAGGCACGTAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCAATCCACGGCTT
261 GCATTGGCACACAGAAATATGAAGATGTGCCTAAAC-CCCCTACCACCCTATCGATCCACGGCTT
* ** ** * * * * * *
3813451 GCGCATCCCGTCTCTCTTTCCGATGTAATGCCCGCCCACCCGCTCATTTCGTCGGTTGGGTTAGG
325 GCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCTCCCGCCCGCTCGTTTCATCGGTTGGCTTAGG
* * *
3813516 CATACGGAGTTCATTCCCAGTCTAAGATC--CGACCAGA-TCAGGGGTTGTGGCGGCAGGATCGG
390 CATACGGAGTTCATTCCCAGTCTAAGATCGAC-ACCAGACTCAAGGGTTGTGACAGCAGGATCGG
* * * * * * *
3813578 CAGCACACAGAGGGGGACCTGACGGATCCCCGACTTGTGCATCCCGCCCCTCTGGTCGACTGAGC
454 AAGCATACAGAGGGGGACC-GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
3813643 GCCCGCACCCTCGTTTCGTAGGTTGACTTTGGCATACGGAGTTCTTTCCCAGTCTAAGCATACGG
518 ACCCGCA----CG----GTA-G-T-A-----G--T-C-GAGTTCATTCCCAATCTAAGCATACGG
* * * * * *
3813708 AGATCATTCCCAGTCTAAGATCAGACCAGATCAAGAGTTGCAGCAGCACATGCTGGGCTTACGCA
563 AGTTCATTCCCAGTCTAAGATCAG----GA-C------TGGACCCGCACATGCTGGGCTCAGGCA
* * *
3813773 TGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCATCATCGTCAGAGCATCACCGGAGAACCTGA-T
617 TGTGTTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCAGAGCATCACCGGAGAACCTGACT
** * *
3813837 CGGTGGCGTTGGGGTTCCAACGATCTGAGGGGCTGGGGGGTGTGCGCACATGAT-TGCGATGGGT
682 -GACGGCATTTGGGTTCC-A-GATC-G-GGGGC-GGGGGGTGTGCGCACATGATGTGCGATGGGT
*
3813901 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
741 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
**
3813966 AAAGAGCATTTGAGATTTTATTGGTTTGCTGCCAGTAG-CATTAAAGTGTCTGA
806 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * * *
3814019 AATGGGGACAATTTATTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAACTTTT
1 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTT
* * * * * *
3814084 TTATGCATGCAAACAACAATACAAGAATCACGTC-AACCAAGTTTGGGGCCAAAACTTCTTCCCA
66 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTAA-CAAGTTTGGGGCCAAAACTCCTTCCGA
* *** *
3814148 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTGGGAAAATAGTGAAAAATAGAAAACGAGTCG
130 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
3814213 TCTTGCCATGAAACTTCACGTGAAGG-TTGAAGGGACCATTGTATGAATTTAGAAGCCATAAAAA
195 TCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
3814277 TGGCATTGGCACACAGCAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
259 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCC-CCTACCACCCTATCGATCCACGGC
* * * ** *
3814342 ATGTGCAT-CTCGTCTTTCTGGCCGGAATAGTGCCTGCCGACCCGCCCACCTGCTCGTTTCATCG
323 TTGCGCATCCT-GTCTCTCTGGCCGGCGTAGTG-C--CC-TCCCG--C-CC-GCTCGTTTCATCG
* * * * * * *
3814406 GCTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC-AGATC-GAATCGAGGGTTGTGGCA
379 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGACACCAGACTCAAGGGTTGTGACA
* * * *
3814469 GGAGGATC-GACAGCATACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCTCGCCCCTTTG
444 GCAGGATCGGA-AGCATACAGAGGGGGA-CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
**
3814533 GCTAGCTGAGCACCCGCACG
507 GCCGGCTGAGCACCCGCACG
3814553 CTCGTTTCGT
Statistics
Matches: 1951, Mismatches: 243, Indels: 158
0.83 0.10 0.07
Matches are distributed among these distances:
850 80 0.04
851 8 0.00
852 3 0.00
853 2 0.00
854 1 0.00
858 12 0.01
859 26 0.01
860 5 0.00
861 69 0.04
862 322 0.17
863 90 0.05
864 271 0.14
865 254 0.13
866 23 0.01
867 8 0.00
868 20 0.01
869 6 0.00
870 6 0.00
872 3 0.00
873 1 0.00
874 2 0.00
879 1 0.00
881 1 0.00
882 1 0.00
883 45 0.02
884 1 0.00
888 2 0.00
889 1 0.00
892 5 0.00
893 312 0.16
894 75 0.04
895 39 0.02
896 118 0.06
897 5 0.00
899 1 0.00
900 5 0.00
901 125 0.06
902 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (859 bp):
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTT
TTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAA
AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCCCTACCACCCTATCGATCCACGGCTTG
CGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCTCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCGACACCAGACTCAAGGGTTGTGACAGCAGGATCGGAA
GCATACAGAGGGGGACCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACC
CGCACGGTAGTAGTCGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
GGACTGGACCCGCACATGCTGGGCTCAGGCATGTGTTGGTGCCGTATTTTTCTTCACCGGGGCAC
CATCGTCAGAGCATCACCGGAGAACCTGACTGACGGCATTTGGGTTCCAGATCGGGGGCGGGGGG
TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTGA
Found at i:3813717 original size:26 final size:26
Alignment explanation
Indices: 3813674--3813726 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3813664 GTTGACTTTG
* *
3813674 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
3813700 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
3813726 G
1 G
3813727 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:3814611 original size:26 final size:26
Alignment explanation
Indices: 3814575--3814627 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3814565 GTTGACTTAG
3814575 GCATACGGAGTTCATTCACAGCCTAA
1 GCATACGGAGTTCATTCACAGCCTAA
* * *
3814601 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGCCTAA
3814627 G
1 G
3814628 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGCCTAA
Found at i:3815286 original size:26 final size:26
Alignment explanation
Indices: 3815256--3815308 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3815246 GTTGACTTAG
3815256 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3815282 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3815308 G
1 G
3815309 ATCGAAATGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3816190 original size:26 final size:26
Alignment explanation
Indices: 3816161--3816213 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3816151 GTTGACTTAG
*
3816161 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
3816187 GCATGCAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3816213 G
1 G
3816214 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3819939 original size:26 final size:26
Alignment explanation
Indices: 3819909--3819959 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
3819899 GTTGACTTAG
3819909 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
3819935 GCATACGGAGTTCATTCCTAGTCTA
1 GCATACGGAGTTCATTCCTAGTCTA
3819960 TGATCGGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:3822279 original size:892 final size:889
Alignment explanation
Indices: 3820148--3822426 Score: 2937
Period size: 905 Copynumber: 2.5 Consensus size: 889
3820138 CTTATATTGG
** * * * *
3820148 CCCTTAAAGAGTTTTTGTGATTTTACATGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGG
1 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
3820213 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
66 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGC
* * * * *
3820278 TTGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGACCAAAACACCATCCGAAAAAATT
130 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* *
3820343 TTAAAAAATCTC-AGACCGCAAAAA-TTTCAAAAATCATGAAAAATAGAAAACGAGTAGTCTTGC
195 TTAAAAAATCTCGA-ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
3820406 CATGAAACTTAACGTGACGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
259 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * *
3820471 GGTATGCAAAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCA
324 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * *
3820536 TCCCGCCTCTCTAGCTGGA-GTAGTGCCCGCCCGCCTGCCCACCCGCTCATTTCGTCGGTTGGCT
389 TCCCGTCTCTCTGGC-CGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
** * * ** *
3820600 TAGGCATACGGAGTTCATTCCTTGTCTAAGATTGGA-CTAGACCAAGGGTTGCAGCAACAGGATT
453 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACTGAGGGTTGCAGCAGCAGGA-T
** * *
3820664 GACAGCACATAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGTTGA
516 GACAGCACGCAAAGGGGGACCCGATCGATCCCCG-CTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
3820729 GCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTATAT
580 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * * * *
3820794 GGAATTCATTCCCAGTCTAAGACCGGACTGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGG
645 AGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * *
3820859 CATGTGCTGGTGCCACATTTTTTCTTTGTCGGGGCACCGTCGCCGGAGCATCTCCGGAGAATCTA
710 CATGTGCTGGTGCCACA-TTTTTCTTCGTCGGGGCACCAT---C---G----T-CGGAGAACCTG
* * * *
3820924 ACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCAGGGGGCTGTGCACAAATGATGTGCGATG
763 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATG
* *
3820989 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCAAGAACTCACACC
827 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
3821052 CCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGG
1 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
3821117 GACACCTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAG-TTTTAGGCTGCATTTTTTTGTG
66 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA-GCTG-AATTTTTTGTG
* * **
3821181 CATACCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAA
129 CATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
3821246 TTTTAAAAAATC-CTGAACCATAAAAAGTTT-GAAAATCATCAAAAATAGAAAACGAGTCGTCTT
193 TTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
3821309 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCA
257 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
3821374 TTGGCATGTAGAAATATGAAGATGTGCCTTAACACACCTACCACCCTATCGATCCACGGCTTGTG
322 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
3821439 CGTCTCG-CTTCTCTGGTCGACATAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGG
387 CATCCCGTC-TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * *
3821503 CATATGCATACGGAGTTCATTCCCACTCTAAGATTGGACCGAACTGAAGGG-TGCAGCAGCAGGA
451 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTG-AGGGTTGCAGCAGCAGGA
* * * * * * *
3821567 TAGGCAGCACGCAAAAGAGCACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCAGTT
515 T-GACAGCACGCAAAGGGGGACCCGATCGATCCCC-GCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * ** *
3821632 GAGCACCCGTACACTCATTTCGTGATTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCAT
578 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * *
3821697 ACAGAGCTCATTCCCAGTCAAAGATCGGACCGAACCAAGGGTTGCGGCAGCACATGCTGGGCTCG
643 ACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * * * * *
3821762 AGAATGTGCTGGTGTCACATTTTTCTTCGTCGAGGCACCATCGTCGGAGAACCTGATCGACGGCA
708 GGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGCGGCA
* * * **
3821827 TTGGGGTTTCAATGATCGGGGGTACCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
773 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * **
3821892 TTGGGCCTTATATTAGCCCCCTATCTTTCATCAAACCTCGAGAACTCACACC
838 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
3821944 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGG
1 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
3822009 GACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTTAGCTAAATGTTTTTGTGC
66 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGC
* * *
3822074 ATGCAAAAAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
130 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* ** * * * *
3822139 ATAAAAAATCTCGAACCGCCAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCATCTTGGC
195 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
3822204 ATGAAACTTCACGTGAATGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTT
260 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
3822269 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
325 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * *
3822334 CCCGCCTCTCTGGTCGATGTAGT----GCCCGCCCGCCCGCACGCTCATTTCATCGGTTGGCTTA
390 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* *
3822395 GGCATACAGAGTTCACTCCCAGTCTAAGATCG
455 GGCATACGGAGTTCATTCCCAGTCTAAGATCG
3822427 AATAAGATCG
Statistics
Matches: 1211, Mismatches: 147, Indels: 50
0.86 0.10 0.04
Matches are distributed among these distances:
888 60 0.05
891 81 0.07
892 370 0.31
893 43 0.04
894 1 0.00
898 1 0.00
901 1 0.00
903 5 0.00
904 137 0.11
905 501 0.41
906 11 0.01
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (889 bp):
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGCAGCAGCAGGATGACAG
CACGCAAAGGGGGACCCGATCGATCCCCGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
CATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
CTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
CCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
Found at i:3822749 original size:26 final size:26
Alignment explanation
Indices: 3822713--3822762 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
3822703 GACTTAGGCA
*
3822713 TACGGAGTTCATTCCCAATCTAAGCT
1 TACGAAGTTCATTCCCAATCTAAGCT
*
3822739 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAATCTAAG
3822763 ATCAGACTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAATCTAAGCT
Found at i:3823663 original size:24 final size:26
Alignment explanation
Indices: 3823609--3823706 Score: 146
Period size: 26 Copynumber: 3.8 Consensus size: 26
3823599 ACTTAGGCAT
* *
3823609 ACGGAGTTCATTCCCAGTCTAAGCAA
1 ACGGAGTTCATTCCTAGTCTAACCAA
*
3823635 TCGGAGTTCA-T-CTAGTCTAACCAA
1 ACGGAGTTCATTCCTAGTCTAACCAA
3823659 ACGGAGTTCATTCCTAGTCTAACCAA
1 ACGGAGTTCATTCCTAGTCTAACCAA
*
3823685 ACGGAGTTCATTCCAAGTCTAA
1 ACGGAGTTCATTCCTAGTCTAA
3823707 GATCGGATCG
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
24 20 0.31
25 2 0.03
26 43 0.66
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.27
Consensus pattern (26 bp):
ACGGAGTTCATTCCTAGTCTAACCAA
Found at i:3824582 original size:26 final size:26
Alignment explanation
Indices: 3824553--3824605 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3824543 GTTGACTTAG
3824553 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3824579 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3824605 G
1 G
3824606 ATCGAACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3825457 original size:26 final size:26
Alignment explanation
Indices: 3825428--3825480 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3825418 GTTGACTTAG
*
3825428 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3825454 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3825480 G
1 G
3825481 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.