Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 28 of 129
Found at i:3827259 original size:26 final size:26
Alignment explanation
Indices: 3827223--3827275 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3827213 GTTGACTTAG
*
3827223 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3827249 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3827275 G
1 G
3827276 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3828142 original size:26 final size:26
Alignment explanation
Indices: 3828113--3828165 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3828103 GTTGACTTAG
* *
3828113 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
3828139 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3828165 G
1 G
3828166 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3829053 original size:26 final size:26
Alignment explanation
Indices: 3829023--3829075 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3829013 GTTGACTTGG
3829023 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3829049 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3829075 G
1 G
3829076 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3829582 original size:890 final size:890
Alignment explanation
Indices: 3822521--3830704 Score: 9820
Period size: 890 Copynumber: 9.1 Consensus size: 890
3822511 TGCCCGCTCA
* * * ** * *
3822521 CCCGCTCGCTCGTTTCGTTGATTGGCTTAGGCATACAAAGTTCATTCCTAGTCTAAGATCGGACC
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACC
* * *
3822586 AGACTGAGGGTTGCGACAGCAGGATCGACAGCACGTAAAGAGGGACCCGACCGATCCCCGACTTG
66 GGACTGAGGGTTGCGGCAGCAGGATCGACAGCA-GTAGAG-GGGACCCGACCGATCCCCGACTTG
* * *
3822651 TGCAACCCGCCCCTCTGGCCGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATAC
129 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * *
3822716 GGAGTTCATTCCCAATCTAAGCTTACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGG
194 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGG
* * * *
3822781 TTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT-CTTGCATTTTTCTTC-ACTGGGGCACC
259 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC-CGCATTTTTCTTCGTCT-GGG-AGC
* *
3822844 ATCACCAGAGCATCGTCGAAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGG
321 AT---C---GC--CG--G-AGAACCTGAACGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
* * *
3822909 GGGGGTGTGCCCACATGATGTGTGAAT-GGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCC
375 GGGGGTGTGCGCACATGATGTGCG-ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
3822973 CTCAACAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
439 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
3823038 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
504 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
3823103 GAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTATACCAAGTTTG
569 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * *
3823168 GGGCCAAAACTCCTTCTGAAAAAAGTTTAAAAAATCTCGAACCGTAAAAAGTTTCCAAAATCATG
634 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATG
* *
3823233 AAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGA
699 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
** * *
3823298 ATTTACAAGAAATAAAAATGGCA-TGGCATGCAGAAATATTAAGATGTGCCTAAACCCACCTACC
764 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
3823362 ACCCTATCGATCCATGGCATGCGCATCCCGCCTCTCTGGCCGGCGTA------G--TACCCG
829 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCG
* * * * *
3823416 CCCACCCGCTTGTTTCGTCGGTTTGCTTAGGCATACGGAGTTCATTGCCAGTCTAAGATCGAATC
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACC
* * * * * * * * *
3823481 GGACCGAGGGTTACGACAGCAGGATCGATAGCACGTAAAGGGGGACCTGGCCGATCCCTGGCTTG
66 GGACTGAGGGTTGCGGCAGCAGGATCGACAGCA-GTAGA-GGGGACCCGACCGATCCCCGACTTG
* * * * ** *
3823546 CGTATCCCGCCCCTCTAGCCAGTTGAATGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
129 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
3823611 GGAGTTCATTCCCAGTCTAAGCAATCGGAGTTCATCTAGTCTAACCAAACGGAGTTCATTCCTAG
194 GGAGTTCATTCCCAGTCT-----A----AG-----C-A---T------ACGGAGTTCATTCCCAG
* * *
3823676 TCTAACCAAACGGAGTTCATTCCAAGTCTAAGATCGGATCGAACCGGGGGTTGCGGCAGCACATG
235 TCTAA--GATCGGA---C--T----G-----GA-C-C---G-A----GGGTTGCGGCAGCACATG
* * ** *
3823741 CTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCAATGTCAACGCATCACC
274 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT---C---G--TC--TG-GGA-GCATCGCC
* * * * *
3823806 GGAGAACCTGATCGGCGACATTGGGGTTCCGGCAATC-GGGGGGCCGGGGGGGTGTGCGCACATG
327 GGAGAACCTGAACGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATG
*
3823870 ATGTGCGATGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
392 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
3823935 CTCACACCCCCTTAAAAAGCATTTCAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCT
457 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * * *
3824000 GAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTGTTTAGCTTAATGT
522 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
3824065 TTTTGTCCATGCCAACAAAAATACTAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
587 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * * *
3824130 AAACAATTTTCAAAAATCTCAAACCGTAAAAAGTTTTGC-AAAAT-GTGAAAAATAGAAAATGAG
652 AAAAAATTTTAAAAAATCTCGAACCGTAAAAAG-TTT-CAAAAATCATGAAAAATAGAAAACGAG
* * *
3824193 TTGTCTTGCCATTAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
715 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
3824258 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCTTATCGATCTACG
780 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * **
3824323 ACTTGCGCATCCCGTCTCTCTGGTCGATGTAGT----GCCTGCCCG
845 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCG
* * * * *
3824365 CCCGTCCGCTCGTTTCGTCGGTTGGCTTAGACATACGGAGTTCATTTCTAGTGTAAGATC-AGAC
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-AC
* * * * * * *
3824429 CGGACTGAGGGTTGCGGCAGCAAGATTGATAGTACGTAGAGGGGGCCC-AGTCGAGCCCCGACTT
65 CGGACTGAGGGTTGCGGCAGCAGGATCGACAGCA-GTAGAGGGGACCCGA-CCGATCCCCGACTT
** * * * *
3824493 ATGCATCTCGCCCCTCTGGCCGGTTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATA
128 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * *
3824558 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAATCGA-G
193 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGG
* * * * * * * *
3824622 GTTGCGGTAGCACAAGCTTGGCTCGGGCATGTTCTGGTGCCACATTTTTCTTTGTCGGGGCGCCA
258 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCTGGGAG-CA
* * *
3824687 TCGTCGGAGAACCTGACCTG-CGGCATTGGGGTGT-CGGCGATCGGGGGGGCCGAGGGGGGTGTG
322 TCGCCGGAGAACCTGAAC-GACGGCATTGGGGT-TCCGACGATCGGGGGGGCCG-GGGGGGTGTG
*
3824750 CGCAC-TGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
384 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
3824814 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTA
449 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * *
3824879 AAGTCTCTGAAATGGGGACAATTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAG
514 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
*
3824944 CTGAA-TTTTTTGTGCATGCCAACAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
579 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * * * *
3825008 TCCTTTCGAAAATATTTTCACAAATCTCGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
644 TCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
* * * *
3825073 AACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCTAGA
709 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* ** * *
3825138 AATAAAAATGGCATTGGCACATAGAAATATGAAGACGAGCCTAAACCCACCTACCACCCTATCGA
774 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * *
3825203 TCTATGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCG---GCCCA
839 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCG
* * * * * * * *
3825251 CCCGTCCGCTCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTATAAGATTGGATC
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACC
* * * * * *
3825316 GGACCGAGGGCTGTGGCAGC--G---G---GCAG-AG-GGGGACCCGACCAATCCCTGACTTACG
66 GGACTGAGGGTTGCGGCAGCAGGATCGACAGCAGTAGAGGGGACCCGACCGATCCCCGACTTGCG
* * * * * * *
3825371 CATCCTGCCCCTCTGGCTGGCTGAACACTCGCATGTTCGTTTCGTGGGTTGACTTAGGCATACGG
131 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* *
3825436 AGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
196 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTT
* * * * *
3825501 ACGGCAGCACATGCTGGGCTTGGGCACGTGTTGGTGCAGCATTTTTCTTCGTCGGGGCACCATTG
261 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT--------C--TG
** * * * * *
3825566 TTGGAGCATCGCCGGAGAACCTGTTCGGCGACATTAGGGTCCCGATGATCGGGGGGGCCGGGGGG
316 --GGAGCATCGCCGGAGAACCTGAACGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG
* * *
3825631 GTGTCCCCACATGATGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
379 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
3825696 CAAACCTC-AAAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
444 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * * *
3825760 CATTAAAGTGTTTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATTTTGTACACTTCAAGTT
509 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * * **
3825825 TTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTGCCAGGTTTATGGCG
574 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-
* * *
3825890 AAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-ATACTGTAAAAAGTTTCAAAAATCGTGAAA
638 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGA-ACCGTAAAAAGTTTCAAAAATCATGAAA
* * *
3825954 AATAGAAAATGAGTCGTCTTGCCATGAAACTTTACGTTAAGGCTTAAGGGACCATTGTATGAATT
702 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
** * * * *
3826019 TACAAGCCATAAAAATTTCATTGGCACACAAAAATATAAAGATGTGCCTCAACCCACCTACCACC
767 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
*
3826084 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCA
832 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCG
* * * * *
3826143 CCCGCACGCTCATTTCTTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACT
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACC
* * * ** * * *
3826208 GGA-TCGAGGGTTGCGGTAGTAGGATCGGCAGCACACAAAGGGGGACCCAATCGATCCCCGACTT
66 GGACT-GAGGGTTGCGGCAGCAGGATCGACAGCA-GTAGA-GGGGACCCGACCGATCCCCGACTT
* * * * * *
3826272 GCGCGTCCGGCCCCTCTGGTCGGTTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATG
128 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * *
3826337 CGGAGTTCATTCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATAGGA-TCAGACCGAG
193 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAG
* * * *
3826401 GGTTGTGGCAGCACATGCTGGGCTTGGGCATGTGCTAGTGCCGCATTTTTCTTCGTCTGGGCACC
257 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCTGGG-AGC
* * * ** *
3826466 ATCGCCGGAGAACTTGACCGGCGGCATTGGGGTTCCGTTGGTCGGGGGGGCC-GGGGGGTGTGCG
321 ATCGCCGGAGAACCTGAACGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCG
* * *
3826530 CACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAGACCT
386 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
3826595 TGAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAA
451 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
3826660 GTGTCTGAAATGGGGGCACTTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
516 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * **
3826725 GAATTTTTTTGTGCTTGCCAACAAAAATACAAGGACCACATCTACCAAGTTTGGGGCCAAAACAA
581 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * **
3826790 CTTCC-AAAAAATTTTAACAAATCCCTGAACCGTAAAAAGTTTCAAAAAT-AAAAAAAATAGAAA
646 CTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* * *
3826853 ACGACTCATCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
710 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
3826918 ATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAATCCACCTACCACCATATCGAT
775 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
3826983 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCG
840 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCG
* * * * *
3827034 CCCGCCCGCCCGCTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTTAGATCGGACC
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACC
* * * * * * *
3827099 AGACTGAGGGTTGAGGCAGCAGGATCAATAGCACATAGAGGGGGACCCGATCGATCCCCGGCTTG
66 GGACTGAGGGTTGCGGCAGCAGGATCGACAGCA-GTAGA-GGGGACCCGACCGATCCCCGACTTG
* * *
3827164 CGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATAT
129 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
3827229 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGA-TCGGACCGAGG
194 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGG
* * * * ** * *
3827293 GTTGTGGCAGCACATGTTGGGCTCGAGCAAGTGCTGGTGCCATATTTTTCTTCGTCGGGGCGCCA
258 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCTGGGAG-CA
*
3827358 TCGCCGGAGAATCGCCGGAGAACTTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GG
322 TCGCCGGAGAA---CC--TGAAC--GA----CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
*
3827421 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCT
376 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
3827486 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGT
441 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * *
3827551 AGCGATTAGAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
506 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
3827616 GTTTTTAGCTGAATTTTTTAGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGG
571 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* *
3827681 GCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAA
636 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAA
* *
3827746 AAATAGAAAACGAGTCGTCTTGCCATGAAACCTCACGAGAAGGCTTAAGGGACCATTGTATGAAT
701 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * * *
3827811 TTAGAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAATCCCACCAACCAC
766 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * *
3827876 CCTATCGATTCACGGCTTTCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCG
831 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCG
* * * *
3827936 CCCACCCGTTCGTTTTC-TCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGAC
1 CCCGCCCGCTCG-TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAAC
* * * * * * *
3828000 TGGATTGAGGGTTGCGGTAGC---AT-G-TA--A--A-AGGGGATCCAACCGATCCCCGGCTTGC
65 CGGACTGAGGGTTGCGGCAGCAGGATCGACAGCAGTAGAGGGGACCCGACCGATCCCCGACTTGC
* * * * *
3828055 GCATCCCACCCTTCTGGCCGACTGAGTGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACG
130 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * *
3828120 GAGTTTATTCCCAGTCTAAGCATACAGAGTTCATTCTCAGTCTAAGATCGGA-TCGGACCGAGGG
195 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGG
* * * *
3828184 TTGCGGTAGCACATGCTGGGCTCGGGCTTGTGCTTGTGCTGGTGCCACATTTTTCTTCGTCGGGG
259 TTGCGGCAGCACATGCTGGGCTC--G---G-GCATGTGCTGGTGCCGCATTTTTCTTCGTCTGGG
* * *
3828249 CACCATCGCCGGAGCATTACCGGAGAACCTGTCCGACGGCATTGGGGTACCGACGATCGGGGGGG
318 -AGCATCGCCGGAG-A--ACC--TGAA------CGACGGCATTGGGGTTCCGACGATCGGGGGGG
* * * * *
3828314 CCGGCGGGCGTGAGCACACGTGGTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
371 CCGG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
3828379 ATCCCTCATCAAAGCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
435 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
3828444 GCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGG-CACAAAATCTTGTACA
500 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * * * * * *
3828508 CTTTGAATTTTTAGTTGAATGTTTTTGTGCAAGCCAATAACAATACAAGGATCACATCTGCCAAG
565 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * **
3828573 TTTAGGGCCAAAAATCTTTCCGAAAAAATTTTAAAAAATC-CTGAACCACAAAAAGTTTCAAAAA
630 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAA
* * *
3828637 TCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCATGTGAAAGCTTAAGGGACCATTG
694 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * * *
3828702 TATGAATTTACAAGCCACAAAAATGCCATTGGCATGCAAAAATATGAAGAAGTGCCTAAACCCAC
759 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* * *
3828767 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGGGCCCGTCGGCC
824 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCC
3828832 CG
889 CG
** * * *
3828834 CCCGCCTACTCGTTTCGTTGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGAATC
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACC
* * ** *
3828899 AGACCGAGGGTTATGGCAGCAGGATCGACAGCAGATAGAGGGGCACCCGACCGATCCCCGACTTA
66 GGACTGAGGGTTGCGGCAGCAGGATCGACAGCAG-TAGAGGGG-ACCCGACCGATCCCCGACTTG
* * * *
3828964 TGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCCCGCTCGTTTCATGGGTTGACTTGGGCATAC
129 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* *
3829029 AGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGG
194 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGG
* * **
3829094 TTGCGACAACACATGCTGGGCTCAAGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGG-GCATC
259 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCTGGGAGCATC
* * * *
3829157 GCCGGAGAACCTGAACGAAGGCATTGGGGTTCCGACGATCTGGGGGGTCGGTGGGGTGTGCGCAC
324 GCCGGAGAACCTGAACGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCAC
*
3829222 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTCGA
389 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * * *
3829287 GAACTCACTCCCTCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAATG
454 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * *
3829352 TCTGAAATAGGGACATTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGATTTTTTAGCTGAA
519 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
*
3829417 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCGAAACTCCTT
584 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
** * * * * * *
3829482 CTAAAAAAAGTTTAAAAAATCCCGAACCGAAAAAAGTTTTAAAAATCATGAAAACTAGAAAATGA
649 CCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
*
3829547 GTCGTCTTGCCATGAAACTTCACGTGCAA-GCTTAAGGGACCATTGTATGAATTTAAAAGCCATA
714 GTCGTCTTGCCATGAAACTTCACGTG-AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
3829611 AAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCA
778 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * *
3829676 CGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCTCG
843 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCG
* * ** *
3829724 CCCGCCCACTCGTTTTGTCTATTGGCTTAGGCTTACGGAGTTCATTCCCAGTCTAAGATC-AGAC
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-AC
* * ** * ** * **
3829788 CAGACTGAGGGTTGCAGCAATAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCTCGGGTT
65 CGGACTGAGGGTTGCGGCAGCAGGATCGACAGCA-GTAGA-GGGGACCCGACCGATCCCCGACTT
* * * * *
3829853 GTGCATCCCCGCCCCTTCTGGCAGGCTGAGTGCCCCCACGCTCATTTCGTGGGTTGACTTAGGCA
128 GCGCAT-CCCGCCCC-TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * * **
3829918 TACGAAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTTCCAATCTAAGATCGGACCAGACCGA
191 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGA
* *
3829983 GGGTTGCGGTAGCACATGCTGGTGCTCGGGCATGTAGCTGGTGCCACATTTTTCTTCGTCTGGCA
256 GGGTTGCGGCAGCACATGCTGG-GCTCGGGCATGT-GCTGGTGCCGCATTTTTCTTCGTCT-G--
* * * * *
3830048 CCATCATTCGGTAGCATCGTCGGAGGAACCTTGACCGGCAGCATTGGGGTTCCGACG-TCGGAGG
316 ---------GG-AGCATCGCCGGA-GAACC-TGAACGACGGCATTGGGGTTCCGACGATCGGGGG
*
3830112 GG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCC
369 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
3830176 --TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
434 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * * *
3830239 TGCCAGTAGCCATTAAAGCGTCTGAATTGGGGCCA-TTTTTCCAAATGGTCACAAAATCTTGTAC
499 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
*
3830303 ACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
564 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * *
3830368 GTTTGGGGCCAAAACTCGTTCCGAAAAATTTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAA
629 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
*
3830433 TCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
694 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * * *
3830498 TATGAATTCACAAGCCATAAAAAAGTCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCAC
759 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* ** * * *
3830563 CTGCCACCCTATCGATCCACGGCTTGCGCATCCCACCTCTCTAGCTGACGTAGTGCCCGCCTGCC
824 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCC
*
3830628 TG
889 CG
* * * * * *
3830630 CCCACCCGCTCATTCCGTCGGTTGGCTTAGGGATACGGAGTTCAATCCCAATCTAAGATC-AGAC
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-AC
*
3830694 CGGACCGAGGG
65 CGGACTGAGGG
3830705 CTTTGGCAAC
Statistics
Matches: 6306, Mismatches: 777, Indels: 401
0.84 0.10 0.05
Matches are distributed among these distances:
875 131 0.02
876 48 0.01
877 1 0.00
878 2 0.00
881 1 0.00
884 3 0.00
885 9 0.00
886 498 0.08
887 343 0.05
888 231 0.04
889 165 0.03
890 602 0.10
891 502 0.08
892 300 0.05
893 223 0.04
894 27 0.00
895 181 0.03
896 80 0.01
897 64 0.01
898 372 0.06
899 164 0.03
900 7 0.00
901 300 0.05
902 289 0.05
903 8 0.00
904 209 0.03
905 3 0.00
906 381 0.06
907 92 0.01
908 2 0.00
909 75 0.01
910 165 0.03
911 23 0.00
913 2 0.00
919 21 0.00
921 4 0.00
922 4 0.00
924 22 0.00
926 1 0.00
930 2 0.00
933 1 0.00
934 1 0.00
935 2 0.00
936 1 0.00
939 2 0.00
940 1 0.00
941 1 0.00
943 3 0.00
944 378 0.06
945 163 0.03
946 2 0.00
947 1 0.00
948 93 0.01
949 91 0.01
950 1 0.00
953 1 0.00
954 1 0.00
955 2 0.00
956 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (890 bp):
CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACC
GGACTGAGGGTTGCGGCAGCAGGATCGACAGCAGTAGAGGGGACCCGACCGATCCCCGACTTGCG
CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTT
GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCTGGGAGCATCGC
CGGAGAACCTGAACGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACAT
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
GAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCG
Found at i:3829952 original size:26 final size:26
Alignment explanation
Indices: 3829915--3829967 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
3829905 GTTGACTTAG
*
3829915 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
3829941 GCATAC-AGAGTTCATTTCCAATCTAA
1 GCATACGA-AGTTCATTCCCAATCTAA
3829967 G
1 G
3829968 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:3831334 original size:719 final size:715
Alignment explanation
Indices: 3829941--3831428 Score: 2256
Period size: 719 Copynumber: 2.1 Consensus size: 715
3829931 CCCAGTCTAA
* * * *
3829941 GCATACAGAGTTCATTTCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGT
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAACACATGCTGGT
* ** * * *
3830006 GCTCGGGCATGTAGCTGGTGCCACATTTTTCTTCGTCTGGCACCATCATTCGGTAGCATCGTCGG
66 GCTCGAGCATGTAGCTGGTGCCACATTTTTCTTCACCAGGCACCATCAGTCAGTAGCATCGTCGG
* *
3830071 AGGAACCTTGACCGGCAGCATTGGGGTTCCGACGTCGGAGGGGCGGGGGGGTGTGCGCACATGAT
131 AGGAACCTTGACCGACAGCATTGGGGTTCCGACGTCGGAGGGGCGGAGGGGTGTGCGCACATGAT
* *
3830136 GTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTCCCTCATCAAACCTCGAGAACTCA
196 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTCCCTCATCAAACCTCGAGAACTCA
* *
3830201 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAT
261 CACCCCCTTAAAGAGCATTTGAGACTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAA
*
3830266 TGGGGCCATTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTG
326 TGGGGACATTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTG
*
3830331 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCGTTCCGAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
3830396 TTTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
456 ATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
*
3830461 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAAAGTCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAAAGGCA
** * * *
3830526 TTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCG
586 TTGGCACACAGAAAAATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
*
3830591 CATCCCACCTCTCTAGCTGACGTAGTGCCCGCCTGCCTGCCCACCCGCTCATTCCGTCGGTTGGC
651 CATCCCACCTCTCTAGCCGACGTAGTGCCCG-C--CC-GCCCACCCGCTCATTCCGTCGGTTGGC
3830656 TTAG
712 TTAG
* * * * *
3830660 GGATACGGAGTTCAATCCCAATCTAAGATCAGACCGGACCGAGGGCTT-TGGCAACACATGCTGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGG-TTGCGGCAACACATGCTGG
*
3830724 -GCTCGAGCATGT-GCTGGTGCCACATTTTTCTTTACCGAGGCACCATC-GTCAG-AGCATCGTC
65 TGCTCGAGCATGTAGCTGGTGCCACATTTTTCTTCACC-AGGCACCATCAGTCAGTAGCATCGTC
* * * *
3830785 GGA-GAACC-TGACCGACGGCATT-GGGTTTCGGCGATCGGGGGGGCCGTGAGGGGTGTGCGCAC
129 GGAGGAACCTTGACCGACAGCATTGGGGTTCCGACG-TCGGAGGGG-CG-GAGGGGTGTGCGCAC
3830847 ATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
191 ATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC--TCCCTCATCAAACCTCGA
* *
3830912 GAACTCACACCCCCTTAAAGAGCATTTGAGACTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTG
254 GAACTCACACCCCCTTAAAGAGCATTTGAGACTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCG
*
3830977 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-A
319 TCTGAAATGGGGACA-TTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
*
3831041 ATTCTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCT
383 ATT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
*
3831106 TCCGAAAAAATTTTAAAAAATCTCCAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
447 TCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* * *
3831171 AGTCGTCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
512 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATA
* * *
3831236 AAAATGGCATTGGCACATAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
577 AAAAAGGCATTGGCACACAGAAAAATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCA
** * * * ** *
3831301 CGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTTTGTTTCGTCGG
642 CGACTTGCGCATCCCACCTCTCTAGCCGACGTAGTGCCCGCCCGCCCACCCGCTCATTCCGTCGG
3831366 TTGGCTTAG
707 TTGGCTTAG
* * * * *
3831375 GCATACGGATTTCATTCCCATTCTAAGATCGGACCAGATCGAAGGTTGCAGCAA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAA
3831429 TAGGATCAGC
Statistics
Matches: 694, Mismatches: 65, Indels: 24
0.89 0.08 0.03
Matches are distributed among these distances:
713 9 0.01
714 22 0.03
715 74 0.11
716 71 0.10
717 24 0.03
718 118 0.17
719 374 0.54
720 2 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (715 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAACACATGCTGGT
GCTCGAGCATGTAGCTGGTGCCACATTTTTCTTCACCAGGCACCATCAGTCAGTAGCATCGTCGG
AGGAACCTTGACCGACAGCATTGGGGTTCCGACGTCGGAGGGGCGGAGGGGTGTGCGCACATGAT
GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGACTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAA
TGGGGACATTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAAAGGCA
TTGGCACACAGAAAAATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
CATCCCACCTCTCTAGCCGACGTAGTGCCCGCCCGCCCACCCGCTCATTCCGTCGGTTGGCTTAG
Found at i:3832942 original size:894 final size:892
Alignment explanation
Indices: 3830662--3834072 Score: 4536
Period size: 900 Copynumber: 3.8 Consensus size: 892
3830652 TGGCTTAGGG
* * * *
3830662 ATACGGAGTTCAATCCCAATCTAAGATCAGACCGGACCGAGGGCTT-TGGCAACACATGCTGGGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG-TTGCGGCAGCACATGCTGGGC
*
3830726 TCGAGCATGTGCTGGTGCCACATTTTTCTT--TACCGAGGCACCATCGTC-AGAGCATCGTCGGA
65 TCGAGCATGTGCTGGTGCCACATTTTTCTTCGT-CAG-GGCACCATCGTCGA-AGCATCGTCGGA
*
3830788 GAACCTGACCGACGGCATT-GGGTTTCGGCGATCGGGGGGGCCGTGAGGGGTGTGCGCACATGAT
127 GAACCTGACCGACGGCATTGGGGTTTCGACGATC----GGG-C--G-GGGGTGTGCGCACATGAT
*
3830852 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
184 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
3830917 CACACCCCCTTAAAGAGCATTTGAGACTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGA
249 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
3830982 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTT
314 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
3831047 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
379 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
3831112 AAAATTTTAAAAAATCTCC-AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
444 AAAATTTTAAAAAATC-CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
3831176 TCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
508 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
3831241 GGCATTGGCACATAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACT
573 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
3831306 TGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCGCCCGTTTGTTTCGTCGGT
638 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * *
3831367 TGGCTTAGGCATACGGATTTCATTCCCATTCTAAGATCGGACCAGATCGA-AGGTTGCAGCAATA
703 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGA-GTTGCA-C-ATA
* ** * * *
3831431 GGATCAGCAGCATGCAGAGAAAGAACTCGGCCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCC
765 GGATCAGCAGCACGCAGAG-GGGGACTCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
3831496 GCTGAGCGCCCGCACGCTAGTTTCATGGGTTGACTTAGGCATACGGTGTTCATTCCTAGTCTAAG
829 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-G-GTTCATTCCCAGTCTAAG
3831561 C
892 C
* * *
3831562 ATACGGAGTTCATTCCCAGTCAAAGATCAGATCGGACCGACGGTTGCGGCAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * * * * *
3831627 CGGGCATGTGTTGGTGCCGCATTTTTCATCGTCGGGGCACCATTGTCGGAGCATTGTCAGAGAAC
66 CGAGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGTCGAAGCATCGTCGGAGAAC
* * *
3831692 CTGATCGACAGCATTGGGG-TTCTGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGT
131 CTGACCGACGGCATTGGGGTTTC-GACGATC----GGG-C--GGGGGTGTGCGCACATGATGTGC
3831756 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
188 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
3831821 CCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATT
253 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
3831886 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAGTTTTTTGT
318 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** * * *
3831951 GTATGCCAACAAAAATAGGAGGATCACGTCTAGCAGGTTTGAGGCCAAAACTCCTTCCGAAAAAA
383 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * *
3832016 TTTTAAAAAATCCTGAAACGCAAAATGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
448 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
3832081 GCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
513 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
3832146 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCATGGCTTACGC
578 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * **
3832211 ATCCCGTTTCTCTGGCCGGCGTGGTGCACACCCGTTCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
643 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * *
3832276 TAGGGATACGGAGTTCATTCCCAGTGTAACATCGGATCAGA-CTGAGAGTTGCGACAGCAGGATC
708 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATC-GAGAGTTGC-ACA-TAGGATC
* * *
3832340 -GACAGCACGTAGAGGGGGACCCGGTCGATTCCTGGCTTGCGCATCCCGCCCCTCTGGCCAACTG
770 AG-CAGCACGCAGAGGGGGACTCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCC-ACTG
3832404 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGCAGTTCATTCCCAGTCTAAGC
833 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG--GTTCATTCCCAGTCTAAGC
* * *
3832466 ATACGGAGTTCATTCCCAGTCCAAGATCAGACCGGACCAAGGGTTGCGACAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
** * * * *
3832531 CGAGCATGTGCTGGTATCGCATTTTACTTCGTCAGGGCACCATCATCGAAGCATCGTCGGGGAAC
66 CGAGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGTCGAAGCATCGTCGGAGAAC
* *
3832596 CTGACCGACGGCATTGAGGTTTCGATGATC-GG-GGGGGTGTGCGCACATGATGTGCGATGGGTG
131 CTGACCGACGGCATTGGGGTTTCGACGATCGGGCGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * ** *
3832659 CTGCTACTGGGCTATTATATTGG-CCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTA
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
3832723 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACT
261 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* **
3832788 TTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCAAAATTTTTTTGTGCATGCCA
326 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
3832853 ACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTCAAA
391 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
*
3832918 AATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAA
456 AATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * **
3832983 CTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCTTAAAAATGGCGTTGGCATGT
521 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT
* * * **
3833048 AGAAATATGAAGATGTGCATAAACCCACTTATCACCCTATCGATCCAAAGCTTGCGCATCCCGTC
586 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * *
3833113 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGACCGCTCATTTCGACAGTTGGCTTAGGCATA
651 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * *
3833178 CAGAGTTCATTCCTAGTCTAAGATC--ATAATGGATCGAGGGTTGCCACATAGGATCAGCAGCAC
716 CGGAGTTCATTCCCAGTCTAAGATCGGATCA--GATCGAGAGTTG-CACATAGGATCAGCAGCAC
* * * * * * * *
3833241 GCAGAGGGGGACTCGGTCAATCCCCGGCTTACGCATCCTGCCTCTCTGGCCGATTGAACGCCCAC
778 GCAGAGGGGGACTCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCC-ACTGAGCGCCCGC
3833306 ACGCTCGTTTCGTGGGTTGACTT-----T--GG--------CA---T----
842 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGTTCATTCCCAGTCTAAGC
* * *
3833335 -T-CGGAGTTCATTCCCAGTTTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* ** *
3833398 CGTGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCA---TC----C--C--CGAAGAAC
66 CGAGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGTCGAAGCATCGTCGGAGAAC
* * * *
3833452 CTAACTGGCGGCATTGGGGTTCCGACGATCGGGGGGCCCAGGGGGTGTGCGCACATGATGTGCGA
131 CTGACCGACGGCATTGGGGTTTCGACGATC---GGG--C-GGGGGTGTGCGCACATGATGTGCGA
* *
3833517 TGGGTGCTGGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
190 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
3833582 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAATGGG
255 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
3833647 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
320 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* ** *
3833712 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGATCCAAAACTCCATCCGAAAAAATT
385 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* ** ** *
3833777 TTAAAAAATCCCGAACCGTAAAACGTTTTGAAAATTGTGAAAAATAGAAAATGAGTCGTCTTGCC
450 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
3833842 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCGTAAAAATGGCATTG
515 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** * * *
3833907 GCACGCAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTGTTGATCCACGGCTTGCGCAT
580 GCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * *
3833972 CCCGCCTCTCTAGCTGACGTAGTGCCCGCCTGCCCGCCCACCCGTTCGTTTCGTCGGTTGGCTTA
645 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* *
3834037 GGGATACGGAGTTCATTCCCAGTCTAAAATCGGATC
710 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC
3834073 GGATGGAGGG
Statistics
Matches: 2226, Mismatches: 250, Indels: 103
0.86 0.10 0.04
Matches are distributed among these distances:
856 30 0.01
858 1 0.00
860 3 0.00
864 51 0.02
865 473 0.21
867 93 0.04
868 1 0.00
873 1 0.00
876 2 0.00
884 1 0.00
886 1 0.00
888 1 0.00
892 3 0.00
893 88 0.04
894 480 0.22
895 51 0.02
899 5 0.00
900 588 0.26
901 22 0.01
902 1 0.00
903 42 0.02
904 283 0.13
905 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
CGAGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGTCGAAGCATCGTCGGAGAAC
CTGACCGACGGCATTGGGGTTTCGACGATCGGGCGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
AATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGAGTTGCACATAGGATCAGCAGCACGCA
GAGGGGGACTCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCACTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGTTCATTCCCAGTCTAAGC
Found at i:3834654 original size:708 final size:707
Alignment explanation
Indices: 3833299--3834776 Score: 2120
Period size: 708 Copynumber: 2.1 Consensus size: 707
3833289 GCCGATTGAA
* * * * * * *
3833299 CGCCCACACGCTCGTTTCGTGGGTTGACTTTGGCATTCGGAGTTCATTCCCAGTTTAAGATCAGA
1 CGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGA
** *
3833364 CCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGTGCATGTGCTGGTGCCACATTTTTCTTCA
66 CCAGACCGAGGGTTGCAATAGCACATGCTGGGCTAGTGCATGTGCTGGTGCCACATTTTTCTTCA
* * * * ** * *
3833429 CCAGGGCACCATCCCCGAAGAACCTAACTGGCGGCATTGGGGTTCCGACGATCGGGGGGCCCAGG
131 CCAGGGCACCATCCCCGAAGAACCTAACCGGCGACATTAGGGTTCCGACAATCGGGGCACCAAAG
*
3833494 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAATGGCCCCCTATCCCTC
196 GGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAATGGCCCCCTATCCCTC
* *
3833559 ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
261 ATCAAACCTAGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
3833624 GCCTTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
326 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAG
*
3833689 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAT
391 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAG
* ** * * ** *
3833754 CCAAAACTCCATCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAACGTTTTGAAAATTGTGAAA
456 CCAAAACGCCATCCGAAAAAATTAAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTATGAAA
*
3833819 AATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
521 AATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * *
3833884 TACAAGCCGTAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCTTAAACCCACCTACCACC
586 TACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * *
3833949 CTGTTGATCCACGGCTTGCGCATCCCGCCTCTCTA-G-CTGACGTAGTGCCCGCCTGCC
651 CTATCGATCCAAGGCTTGCGCATCCCGCCTCTC-ACGTC-GACATAGTGCCCGCCCGCC
* * *
3834006 CGCCCACCCGTTCGTTTCGTCGGTTGGCTTAGGGATACGGAGTTCATTCCCAGTCTAAAATCGGA
1 CGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGA
* * ** * *
3834071 TCGGATGGAGGGTTTCAATAGCACATGCTGGGCTTAG-GCATGTGCTGGTGCCGCATTTTTCTTC
66 CCAGACCGAGGGTTGCAATAGCACATGCTGGGC-TAGTGCATGTGCTGGTGCCACATTTTTCTTC
** * * * * * * ** *
3834135 GTCGGGGCACCATCATCGGGAGAACCTGACCGGTGACATTAGGGTTCCGGTAATCGGTGCACCGA
130 ACCAGGGCACCATC-CCCGAAGAACCTAACCGGCGACATTAGGGTTCCGACAATCGGGGCACC-A
*
3834200 AAGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCC
193 AAGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAATGGCCCCCTATCC
3834264 CTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCA
258 CTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCA
*
3834329 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACCAAATCTTGTAAACTTC
323 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTC
3834394 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
388 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * **
3834459 GGGCCAAAACGCCTTCTGAAAAAATTAAAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATTATG
453 GAGCCAAAACGCCATCCGAAAAAATTAAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTATG
* * *
3834524 AAAAATTGAAAAGGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGTCCATTGTATGA
518 AAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
3834589 ATTTATAAGCCATAAAAATGGCATTGGTACATAAAAATATGAAGATGTGCCTAAACCCACCTACC
583 ATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
3834654 ACCCTATCGATCCAAGGCTTGCGCATCCCGTCTGTCACGTCGGCATAGTGCCCGCCCGCC
648 ACCCTATCGATCCAAGGCTTGCGCATCCCGCCTCTCACGTCGACATAGTGCCCGCCCGCC
** * * *
3834714 CGCTTGA-CAGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCA
1 CGC-CCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCA
3834777 AATTGGATCG
Statistics
Matches: 679, Mismatches: 86, Indels: 11
0.88 0.11 0.01
Matches are distributed among these distances:
707 119 0.18
708 506 0.75
709 54 0.08
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (707 bp):
CGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGA
CCAGACCGAGGGTTGCAATAGCACATGCTGGGCTAGTGCATGTGCTGGTGCCACATTTTTCTTCA
CCAGGGCACCATCCCCGAAGAACCTAACCGGCGACATTAGGGTTCCGACAATCGGGGCACCAAAG
GGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAATGGCCCCCTATCCCTC
ATCAAACCTAGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAG
TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAG
CCAAAACGCCATCCGAAAAAATTAAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTATGAAA
AATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACC
CTATCGATCCAAGGCTTGCGCATCCCGCCTCTCACGTCGACATAGTGCCCGCCCGCC
Found at i:3837133 original size:24 final size:24
Alignment explanation
Indices: 3837099--3837144 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
3837089 AAGTTTGGGG
*
3837099 CCATCCTCGGCATGCACATCCCAC
1 CCATCCCCGGCATGCACATCCCAC
3837123 CCATCCCCGGCATGCACATCCC
1 CCATCCCCGGCATGCACATCCC
3837145 CAGTCTAACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.20, C:0.52, G:0.13, T:0.15
Consensus pattern (24 bp):
CCATCCCCGGCATGCACATCCCAC
Found at i:3838899 original size:26 final size:26
Alignment explanation
Indices: 3838863--3838915 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3838853 GTTGACTTAG
*
3838863 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
*
3838889 GCATACGGAGTCCATTCTCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
3838915 G
1 G
3838916 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:3840646 original size:26 final size:26
Alignment explanation
Indices: 3840616--3840667 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
3840606 TGACTTAGGC
*
3840616 ATACGGAGTTCATTCGCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
3840642 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
3840668 TCGGACCAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:3841532 original size:26 final size:26
Alignment explanation
Indices: 3841496--3841548 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
3841486 GTTGACTTAG
3841496 GCATACGGAGTTCATTCCC-GATCTAA
1 GCATACGGAGTTCATTCCCAG-TCTAA
*
3841522 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3841548 G
1 G
3841549 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3841912 original size:896 final size:880
Alignment explanation
Indices: 3839765--3843157 Score: 4185
Period size: 896 Copynumber: 3.9 Consensus size: 880
3839755 TTTGACTTAG
* * * *
3839765 GCATACGGAGTTGATTCCCAGCCTAAGATCAGACCGAACCAAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG-ACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
3839830 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCCCCGAGGCACCATCACCGA----AGAACCTGAT
65 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCACCGATCCGAGAACCTGAC
* * **
3839891 CGGCGGCATTAGGGTTCTAACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
130 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
3839956 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAGCTCACACCCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
3840021 AAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGTAGACATTAAAGTATCTGAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * * *
3840086 TTTTTTCAAACGATCACAAAATCTTGTTCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCT
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
3840151 AACAAAAATACAAGGATCACATCTACC-ATTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAA
390 AACAAAAAAACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
** * * *
3840215 AAATCTCGAACCGCAAAAAGTTTCAAAAATAGTGAAAAGTAGAAAACAAGTCATCTTGCCATGAA
455 AAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCATCTCGCCATGAA
**
3840280 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
520 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
* * *
3840345 CAGAAATATGAAGATGTGCCTAAAACCACCTACCACCCTATGGATCCACGGCTTGCACATCCCGT
585 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
3840410 CTCTCTGGCCAACGTAGTGCCCGTCCGCCCGCCCGCTCATTTCGACGGTTGGCTTAGGCATACAG
650 CTCTCTGGCCGACGTAGTG--C--CCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGG
* *
3840475 AATTCATTCCCAGTCTAAGATTGAACCAGACCGAGGGTTGC-AGCA--A-C-AC-G---TAGAAG
711 AGTTCATTCCCAGTATAAGATTGAACCAGACCGAGGGTTGCAAGCAGGATCGACAGCACTAGAAG
* * * * *
3840531 GGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGTCGACTGAGTGCCTGCACGCTTG
776 GGGA-CCGGCCGATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCG
* *
3840596 TTTCATGAGTTGACTTAGGCATACGGAGTTCATTCGCAGTCTAA
839 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC-CA-TCTAA
* * * *
3840640 GAATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGATGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
3840705 CTCAGGCATGTCCTGGTGCCGTATTTTTCTTCATCGGGGCGCCAT---CG-TCAGAGAACCTGAC
65 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCACCGATCCGAGAACCTGAC
* *
3840766 CGACGGCATTGGGGTTCCGACGATC-GGGGGGTCGGGGGGTGTACGCACATGATGTGCGATGGGT
130 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * * *
3840830 GCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACTTTGAGAACTCACACCCCTTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
3840895 GAAGAGCATTGGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * **
3840960 TTTTTTCAAATTGTCACAAAATCTTGCACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAAACC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
3841025 AA-AAGAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAA
390 AACAA-AAAAACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * * *
3841089 AAAATC-CTAAACCGTAAAAAGTTTTTAAAATCGTGAAAAATAGAAAACGAGTCGTCTCGCCATG
454 AAAATCTC-GAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCATCTCGCCATG
* * *
3841153 AAACTTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGTA
518 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
3841218 CACAGAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCCACAGCTTGCGCAT-CC
583 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
3841282 GTCTCTCTGGCCGATGTAGTGCCTGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
648 GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAG
* * ** *
3841347 TTCATTCCCAATATAAGATTGGACTGGACCGAGGGTTGCAATAGCAGGATCGACAGCACATAGAG
713 TTCATTCCCAGTATAAGATTGAACCAGACCGAGGGTTGC-A-AGCAGGATCGACAGCAC-TAGAA
* * * * *
3841412 GGGGACTCGGCCGATCCCCAGCTTGAGCATCTCGCCCCTCTGACC-AGCTGAGCACCCGCACGCC
775 GGGGAC-CGGCCGATCCCCGGCTTGCGCATC-CGCCCCTCTGGCCGA-CTGAGCGCCCGCACGCT
3841476 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCTAA
837 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CC-ATCTAA
* ** **
3841522 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACCGAGGGTTGCGACAGCACATGCTGGG
* **
3841587 CTCGGGCATGTGCTGGTGCTGTATTTTTCTTCTTCGGGGCACCATCACCGGAGCATCGTCGAGGA
65 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCACC---G-ATC--CGA-GA
* * ** * * *
3841652 ACCTGACCGGCGACATTGGGGTTTTGGCGATCGGGGGGGCCGGGGGGGGTGTGCGCATATGATAT
123 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGT
* * **
3841717 GCGATGGGTGCCGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTTAAGAACTCA
186 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
3841782 CACCCCCTTAAAGAGCATATGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTTTGAAA
251 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
3841847 TGGGGACACTTTTTTCAAATGGTCATAAAATATTGTTCACTTTGAGTTTTTAGCTGAATTTTTTT
316 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
3841912 GTGCATGCCAAAAAAAAATACAA-GATCACATCTACCAAATTTGGGGCCAAAAAC-CCTTCCGAA
381 GTGCATGCCAACAAAAAA-ACAAGGATCACATCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAA
* * **
3841975 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCAT
444 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCAT
* *
3842040 CTTC-CCATGAAGCTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAAT
509 C-TCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * * *
3842104 GGCATTGGCCCTCAAAAATATGAAGATGTGCCTAAACCCATCTACCACCTTATCGATCCACGACT
573 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
3842169 TGCGCATCTCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGTCCGCTCATTTCATCGGTTGGC
638 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C--CCGCTCATTTCGTCGGTTGGC
* * * ** * *
3842234 TTAGGCATACGGAGTTGATTCCCAGTATAAGATCGAACCGGAAAGAGGGTAGCGACAGCAGGATA
699 TTAGGCATACGGAGTTCATTCCCAGTATAAGATTGAACCAGACCGAGGGTTGC-A-AGCAGGATC
* * * * *
3842299 GGCAGCACGTAGAAGGGGACCTGACCGATCCTCGGCTTGCGCGTCCTGCCCTTCTGGCCGACTGA
762 GACAGCAC-TAGAAGGGGACC-GGCCGATCCCCGGCTTGCGCATCC-GCCCCTCTGGCCGACTGA
* * * * *
3842364 GCGCTCGCACGCTC-ATTCGTGGGTCGACATAGGCATACAGAGTTCATT-C-TC--A
824 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATCTAA
* *
3842416 GTC-TA---AG---ATT----G-----GA-C---CAGACCGAGGGTTGCGCCAGCACATGCTGGG
1 G-CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACCGAGGGTTGCGACAGCACATGCTGGG
* * ** * *
3842461 CTCGGGCAGGTGCTGTTGCCGTATTTTTCTTCACCGGGGTGCCATCGTCGGAGCATCGCCGATGA
65 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATC-AC--CG-AT--CCGA-GA
* *
3842526 ACCTGACCGACGGCATTGGGGTTCCGACGATTGGAGGGGCCGGGTGGGTGTGCGCACATGATGTG
123 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGGTGTGCGCACATGATGTG
* *
3842591 CGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTCGAGAACTCAC
187 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
3842656 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
252 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
3842721 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAA-TTTTTTG
317 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
3842785 ATGCATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
382 -TGCATGCCAACAAAAAAACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* **
3842850 AATTTT-AAAAATCTCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTTGTCT
446 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCATCT
* * ** *
3842914 TGCCATGAAACTTCACGTGAAGGCTTAAGAGTGCATTGTATGAATTTACAAGCCATAAAAATCGC
511 CGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
3842979 ATTGGCACATAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGT
576 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
3843044 GCATCCCGTGTCTCTGGCTGACGTAGTGCCCGCCCGCCCACCCACTCGTTTCGTCGATTGGCTTA
641 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG----CCCGCTCATTTCGTCGGTTGGCTTA
* *
3843109 GGCATA-GGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGC
702 GGCATACGGAGTTCATTCCCAGTATAAGATTGAACCAGACCGAGGGTTGC
3843158 GGCAGCACAT
Statistics
Matches: 2182, Mismatches: 271, Indels: 134
0.84 0.10 0.05
Matches are distributed among these distances:
870 71 0.03
871 36 0.02
872 243 0.11
873 252 0.12
874 365 0.17
875 327 0.15
876 3 0.00
877 2 0.00
878 2 0.00
879 2 0.00
881 3 0.00
882 188 0.09
883 2 0.00
884 1 0.00
885 1 0.00
888 4 0.00
890 2 0.00
891 2 0.00
892 2 0.00
893 29 0.01
894 11 0.01
895 1 0.00
896 423 0.19
897 43 0.02
898 1 0.00
899 1 0.00
900 32 0.01
901 132 0.06
902 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (880 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACCGAGGGTTGCGACAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCACCGATCCGAGAACCTGACC
GACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAAAACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
AATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCATCTCGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTATAAGATTGAACCAGACCGAGGGTTGCAAGCAGGATCGACAGCACTAGAAGGGGAC
CGGCCGATCCCCGGCTTGCGCATCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTG
GGTTGACTTAGGCATACGGAGTTCATTCCATCTAA
Found at i:3843773 original size:713 final size:714
Alignment explanation
Indices: 3842393--3843851 Score: 2237
Period size: 713 Copynumber: 2.0 Consensus size: 714
3842383 TGGGTCGACA
* *
3842393 TAGGCATACAGAGTTCATTCTCAGTCTAAGATTGGACCAGACCGAGGGTTGCGCCAGCACATGCT
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGCCAGCACATGCT
* ** ** **
3842458 GGGCTCGGGCAGGTGCTGTTGCCGTATTTTTCTTCACCGGGGTGCCATCGTCGGAGCATCGCCGA
66 GGGCTCGGGCAGGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCGA
* * *
3842523 TGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGAGGGGCCGGGTGGGTGTGCGCACATGAT
131 TGAACCTGACCGACGACATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGGTGTGCGCACATGAT
3842588 GTGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTCGAGAACT
196 GTGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTCGAGAACT
* * *
3842653 CACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
261 CACACCCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
3842718 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTT
326 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTT
3842783 TGATGCATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
391 TGATGCATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * ** * **
3842848 AAAATTTTAAAAATCTCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTTGTC
456 AAAATTTTAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGACGTC
** *
3842913 TTGCCATGAAACTTCACGTGAAGGCTTAAGAGTGCATTGTATGAATTTACAAGCCATAAAAATCG
521 TTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATAAATTTACAAGCCATAAAAATCG
* *
3842978 CATTGGCACATAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
586 CATTGACACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * **
3843043 TGCATCCCGTGTCTCTGGCTGACGTAGTGCCCGCCCGCCCACCCACTCGTTTCGTCGATTGGCT
651 TGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCACTCACTTCGTCGATTGGCT
*
3843107 TAGGCATA-GGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCT
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGCCAGCACATGCT
* ** * *
3843171 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCATCGG
66 GGGCTCGGGCAGGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCGGAGCATC-GCCG
* * * *
3843236 A-GAACCTGACCGACGACGTTGGGGTTCC-AGTGATCGGGGGGGTCGGGGGGGTGTGCGCACATG
130 ATGAACCTGACCGACGACATTGGGGTTCCGA-CGATCGGAGGGGCCGGGGGGGTGTGCGCACATG
* *
3843299 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTCGAGAA
194 ATGTGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTCGAGAA
* *
3843363 CTCACATCCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCGAGTAGCCATTAAAGTGTCT
259 CTCACACCCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
3843428 AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
324 AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTT
* * * *
3843493 TGTT-TTGCATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CTAAACTCCTTCC
389 T-TTGATGCATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
*** **
3843556 GAAAAAATTTTAAAAAAATCCCAAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGTG
453 GAAAAAATTTT--AAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAG
*
3843621 ACGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAA
516 ACGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATAAATTTACAAGCCATAAA
* * * *
3843686 AATGGCATTGACACGCAGAAATATGAAGCTGTGCCTAAACCCACCTACCACCCTATCGATCCACG
581 AATCGCATTGACACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
3843751 GCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGGCCGCCCGCCCGCCCGCTCACTTCGTCGGTT
646 GCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCACTCACTTCGTCGATT
3843816 GGCT
711 GGCT
3843820 TAGGCATACGGAGTTCATTCCCAGTCTAAGAT
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGAT
3843852 CAGACCGAAC
Statistics
Matches: 673, Mismatches: 66, Indels: 12
0.90 0.09 0.02
Matches are distributed among these distances:
711 23 0.03
712 176 0.26
713 440 0.65
714 34 0.05
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (714 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGCCAGCACATGCT
GGGCTCGGGCAGGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCGA
TGAACCTGACCGACGACATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGGTGTGCGCACATGAT
GTGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTCGAGAACT
CACACCCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTT
TGATGCATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
AAAATTTTAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGACGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATAAATTTACAAGCCATAAAAATCG
CATTGACACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
TGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCACTCACTTCGTCGATTGGCT
Found at i:3845342 original size:902 final size:901
Alignment explanation
Indices: 3843982--3845791 Score: 2597
Period size: 902 Copynumber: 2.0 Consensus size: 901
3843972 GTTGACTTAG
* * * *
3843982 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGAATCGAGGGTTTCGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCGAAGATCGAACCGAATCGAGGGTTACGACAGCAAATGCTGGG
** * *
3844047 CTCGGGCATGTGTCGGTGCCGTATTTTTCTTCATCGAGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCAAGCATGTGTCGGTGCCGCATTTTTCTTCATCGAGGCACCATCGTCAGAGCATCGTCGGAGA
* * * *
3844112 ACCTGACCGGTGGCATTGGGTTCCAACGATCGGAGGGCCGGGGGGTGTGCGCACATGATGTGCGA
131 ACCTGACCGGCGGCATTGGGCTCCAACGATCGGAGGGCCGAGGGGTGTGCGCACATGATGGGCGA
* * * **
3844177 TGGGTGCTGCTACTTGGCACTTATATTGGCCCCCTATCCCTCATTAAACCTTGAGAACTCACACC
196 TGGGTGCTGCTACTTGGCACTTATATTGGCCCCATATCCCTCATAAAACATCCAGAACTCACACC
3844242 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGG
*
3844307 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTGAATTTTTTTGTGC
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTAAATTTTTTTGTGC
* *
3844372 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCCCGAAAAAATT
391 ATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCCCAAAAAAATT
* *
3844437 TTAAAAAATCCTGAACCGTAGAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
456 TTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
3844502 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAGAATGGCATTG
521 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * *
3844567 GCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCAGCCTATCGATCTAC-GGCTTGCGCA
586 GCACACAGAAATACGAAGATGTGCCTAAACCCACCTACCACCCGACCGATC-ACTGGCTTGCGCA
* * * ** * ** *
3844631 TCCTGTCTCCCTGGCCGGTGTAGTGCCTGCCCGCCCGCCCATCTGCTCATTTCGCCGGTTGGCTT
650 TCCCGTCACCCTGGCCGGCGTAGTGCCCACCCGCCCGCCCACCCACTCATTTCGCCGATTGGCTT
* * ** ** * *
3844696 AGGCATACGGA-GTTCATTCCCAGTCTAAGATCAGACCGGAGGGAGGGTTGTGGCAACAGGATCG
715 AGGCATAC-GATGTTCATTACCAGTCTAAGATCAGACCAGACCGAGGGTTCCGACAACAGGATCA
* * *** * *
3844760 ACAGCACGCAGAGGGGGACCCGGC-CATCCCCGGCTTGCGCATCTTGCCCCTTTGGTCGGCTGAG
779 ACAGCACACAGAGGGGGACCCGGCTCATCCCCGGCATGCGCATCCCACCCCTCTGGTCGACTGAG
* * *
3844824 CACCCGCACACTCATTTCACGGGTTGACTTAGGCATACGGACTTCATTCCTAGTCTAA
844 CACCCACACACTCATTTCACGGGTTGACTTAGGCATACGGACTTCATTCCCAATCTAA
* *
3844882 GCATACGAAGTTCATTCCCAGTCGAAGATCGGACCAGACT-GAGGGTTACGACAGCAAATGCTGG
1 GCATACGAAGTTCATTCCCAGTCGAAGATCGAACC-GAATCGAGGGTTACGACAGCAAATGCTGG
* * * *
3844946 GCTCAAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTG-CTAGAGCATCGTCGGA
65 GCTCAAGCATGTGTCGGTGCCGCATTTTTCTTCATCGAGGCACCATCGTC-AGAGCATCGTCGGA
* * *
3845010 GTACCTGACCGGCGGCATTGGGGCTCCGACGATCGGGGGGCCGAAGGGGTGTGCGCACATGATGG
129 GAACCTGACCGGCGGCATT-GGGCTCCAACGATCGGAGGGCCG-AGGGGTGTGCGCACATGATGG
* * *
3845075 GTGATGGGTGCTGGTACTTTGC-CTTTATATTGGCCCCATATCCCTCATAAAACATCCAGAACTC
192 GCGATGGGTGCTGCTACTTGGCAC-TTATATTGGCCCCATATCCCTCATAAAACATCCAGAACTC
3845139 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAA
* *
3845204 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTAAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTAAATTTTTT
* * * *
3845269 TGTGCATGCCAACAAAAGTAAAAGGATCGCGTCTACCATGTTTGGGGCCAAAACTCCTTCCAAAA
386 TGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCCCAAAA
*
3845334 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
451 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
3845399 TTGCCCTGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGG
** *
3845464 CATTGGCATGCAGAAATACGAAGATGTGCCTAAACCCACCTACCACCCGACCGATCCCTGGCTTG
581 CATTGGCACACAGAAATACGAAGATGTGCCTAAACCCACCTACCACCCGACCGATCACTGGCTTG
* * *** * * *
3845529 CGCATCCCGTCACTCTGGCCGGCGTAGTGCCCACCCTCCCGCTTGCCCACTCGTTTTGTCGATTG
646 CGCATCCCGTCACCCTGGCCGGCGTAGTGCCCACCCGCCCGCCCACCCACTCATTTCGCCGATTG
* ** *
3845594 GCTTAGGTATACGATGTTCATTACCAGTCTAAGATTGGACCAGACCGAGGGTTCCGACAGCAGGA
711 GCTTAGGCATACGATGTTCATTACCAGTCTAAGATCAGACCAGACCGAGGGTTCCGACAACAGGA
* * **
3845659 TCAACAGCACACAGAGGTGGACCCGGCTGATCCTTGGCATGCGCATCCCACCCCTCTGGTCGACT
776 TCAACAGCACACAGAGGGGGACCCGGCTCATCCCCGGCATGCGCATCCCACCCCTCTGGTCGACT
* * *** * *
3845724 GAGCACCCACACGCTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAA
841 GAGCACCCACACACTCATTTCACGGGTTGACTTAGGCATACGGACTTCATTCCCAATCTAA
3845785 GCATACG
1 GCATACG
3845792 GTATTGATGC
Statistics
Matches: 800, Mismatches: 102, Indels: 13
0.87 0.11 0.01
Matches are distributed among these distances:
899 1 0.00
900 125 0.16
901 27 0.03
902 561 0.70
903 86 0.11
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
GCATACGAAGTTCATTCCCAGTCGAAGATCGAACCGAATCGAGGGTTACGACAGCAAATGCTGGG
CTCAAGCATGTGTCGGTGCCGCATTTTTCTTCATCGAGGCACCATCGTCAGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGCTCCAACGATCGGAGGGCCGAGGGGTGTGCGCACATGATGGGCGA
TGGGTGCTGCTACTTGGCACTTATATTGGCCCCATATCCCTCATAAAACATCCAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTAAATTTTTTTGTGC
ATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCCCAAAAAAATT
TTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTG
GCACACAGAAATACGAAGATGTGCCTAAACCCACCTACCACCCGACCGATCACTGGCTTGCGCAT
CCCGTCACCCTGGCCGGCGTAGTGCCCACCCGCCCGCCCACCCACTCATTTCGCCGATTGGCTTA
GGCATACGATGTTCATTACCAGTCTAAGATCAGACCAGACCGAGGGTTCCGACAACAGGATCAAC
AGCACACAGAGGGGGACCCGGCTCATCCCCGGCATGCGCATCCCACCCCTCTGGTCGACTGAGCA
CCCACACACTCATTTCACGGGTTGACTTAGGCATACGGACTTCATTCCCAATCTAA
Found at i:3848152 original size:26 final size:26
Alignment explanation
Indices: 3848116--3848168 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3848106 GTTGACTTAG
* *
3848116 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3848142 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3848168 G
1 G
3848169 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3848766 original size:899 final size:894
Alignment explanation
Indices: 3846388--3849295 Score: 4135
Period size: 896 Copynumber: 3.2 Consensus size: 894
3846378 GCTCAAACCA
* * * *
3846388 AGGGTTACGGCAGCACATGCTGGTCTCGGGCATGTGTTGGTGCC-ACATATTTCTTC-ACCGGGG
1 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGA-ATTTTTCTTCGTCC-GGG
* * * * * * * * *
3846451 TACCATCGCTGGAGCATCGTCGGAAAACCTGACCGGCAACATTGAGGTTCCGATGATCGGGGGGG
64 CACCATCACCGGAGCATCGCCGGAGAACCTGACCAGCAGCATTGGGGTTCCGACGATCGGGGGGG
* *
3846516 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCAGTTACTTGGCCCTTATATTGGCCCCCTAT
129 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
3846581 CCCACATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGC
194 CCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGC
*
3846646 CAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
259 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
3846711 TCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACG-GCTACCAAAT
324 TTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTG-TACCAAGT
* * *
3846775 TTGGGTCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATT
388 TTGGG-GCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGT-AAAAGTTTCAAAAATC
* *
3846840 ATGAAAAATAGAAAACAAGTCATCTGGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
451 ATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
3846905 TGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAACCACCT
516 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
3846970 ACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
581 ACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGGCG-AATGCCCGCCCGCCCG
* * ** ** *
3847035 CCCGCTCGTTTCATC-GATGTTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACGGGCT
645 -CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGACT
* * * *
3847099 GAGGGTTGAGGCAGTAGGATTGGCAGCACGTAGAGGGGGACCCGGCCGATCCCTGGCTTCCGCAT
709 GAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCAT
* * * *
3847164 CCCACCCCTCTAGCCGGTTGAGCACCCGCACGCTTGTTTCATTGGTTGACTTAGGCATACGGAGT
774 CCCACCCCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGT
* ** * **
3847229 TCATTCCCAGTCTAAGCTTACAGAGTTCATTCCCAGTCTAAGATAAGACCGGATTG
839 TCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
* * * *
3847285 AGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
1 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGAATTTTTCTTCGTCCGGGCA
* * * * **
3847350 CCATCATCGGAGCATCGCCGGATAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGTGGGGTT
66 CCATCACCGGAGCATCGCCGGAGAACCTGACCAGCAGCATTGGGGTTCCGACGATCGGGGGGGCC
* * *
3847415 GGGGGGTGTGCGCACATGATGTGCGAGGGGTGCTGGTACTTGGCCCATATATTGTCCCCCTATCC
131 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
3847480 CTCATCAAACCTCGAGAACTCACA-CCCTTTAAAGAGCATTCT-AGATTTTATAGGTTTGCTGCC
196 CTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATT-TGAGATTTTATAGGTTTGCTGCC
*
3847543 AGTAGCCATTAAAGTGTCT-AGAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACT
260 AGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * *
3847607 TTGAGTTTTTACCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGAACACATCTACCAAGTT
324 TTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTGTACCAAGTT
* * **
3847672 TGGGGCCAAAACTCATTTCGAAAAAATTGTT-ACAAATCCCGAACCGTAAAATGTTTTGAAAATC
389 TGGGG-CAAAACTCCTTTCGAAAAAATT-TTAAAAAATCCCGAACCGTAAAA-GTTTCAAAAATC
* *
3847736 ATGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
451 ATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
3847801 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
516 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
*
3847866 ACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGCAATGCCCGCCCGCCCG
581 ACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGGCG-AATGCCCGCCCGCCCG
* *
3847931 TCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGAC
645 -CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGAC
* * *
3847996 TGAGTGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGTCCCGGCCGATCCCTGGCTTGCACA
708 TGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCA
* *
3848061 TCCCACCCCTCTGGCCGGTTGAGCACCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
773 TCCCACCCCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAG
*
3848126 TTCATTCTCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
838 TTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
*
3848183 AGGGTTGCGGCAGCACATGCTGGGCTGGGGCATGTGTTGGTGCCGAATTTTTCTTCG-CCGGGCA
1 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGAATTTTTCTTCGTCCGGGCA
* *
3848247 CCATCACCGGAGCATCGCCGGAGAACCTGACCGGCAGCATTGGGGTTCTGACGATCGGGGGGGCC
66 CCATCACCGGAGCATCGCCGGAGAACCTGACCAGCAGCATTGGGGTTCCGACGATCGGGGGGGCC
* * * *
3848312 GGGGAAGGTTTGCGCACATGATGGGTGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTAT
131 GGGG--GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
3848377 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
194 CCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGC
3848442 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
259 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
3848507 TTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTGTACCAAGCT
324 TTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTGTACCAAGTT
* * * *
3848572 TGGGGCAAAACTCC-TTCTGAAAAAATTTTAAAAAATCCTGACCCGCAAATAGTTTCAAAAATCG
389 TGGGGCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAACCGTAAA-AGTTTCAAAAATCA
* * *
3848636 TGAAAAATAGAAAACGAGTCATCTTGCCATGAATCTTCACCTGAAGGCTCAAGGGACCATTGTAT
452 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
3848701 GAATTTACAAGCCATAAAAATGGTATTGGAACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
517 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
3848766 CCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA-G--TGCCCG--C-CC
582 CCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGGCGAATGCCCGCCCGCCCGCC
* * *
3848825 GCTCATTTCGTCGGTTGGCTTAGGCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
647 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACTGA
* * * * * ** * * * * * *
3848890 GGGTTTTGGTAGCTGGATCGACAGCGCAAAAAAAGGGGACTCGACTGATCCCTGGCTAGCGCATC
711 GGGTTGTGGCAGCAGGATCGGCAGCAC-GTAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCATC
* *
3848955 CCACCCCTCTGGCCGGTTGAGCACCCCCACGCTCGTTTTGTAGGTTGACTTAGGCATACGGAGTT
775 CCACCCCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTT
* * *
3849020 CATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGAACCG
840 CATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCG
** * ** * * *
3849075 AGGGTTGCTACAGCACGTGCTACGCTCGGGCATGTGTTGGTGTCGTATTTTTCTTCGTCGGGGCA
1 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGAATTTTTCTTCGTCCGGGCA
** * ** * *
3849140 CCATCGTCGGAGCATAGCCGGAGAACCTGACCAGTGGCATTGGGGTTCCGGCAATCGGGGGGGCC
66 CCATCACCGGAGCATCGCCGGAGAACCTGACCAGCAGCATTGGGGTTCCGACGATCGGGGGGGCC
*
3849205 GGGGGGTGTGCGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGG-CCCCTAT
131 GGGGGGTGT--GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
3849269 CCCTCATCAAACC-CTGAGAACTCACAC
194 CCCTCATCAAACCTC-GAGAACTCACAC
3849296 TTTTTTCAAA
Statistics
Matches: 1799, Mismatches: 187, Indels: 55
0.88 0.09 0.03
Matches are distributed among these distances:
891 88 0.05
892 218 0.12
893 109 0.06
895 10 0.01
896 396 0.22
897 297 0.17
898 232 0.13
899 288 0.16
900 160 0.09
901 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (894 bp):
AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGAATTTTTCTTCGTCCGGGCA
CCATCACCGGAGCATCGCCGGAGAACCTGACCAGCAGCATTGGGGTTCCGACGATCGGGGGGGCC
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTGTACCAAGTTTG
GGGCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAGTTTCAAAAATCATGAA
AAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGGCGAATGCCCGCCCGCCCGCCGCTC
GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGACTGAGGGTT
GTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCACCC
CTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCC
CAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
Found at i:3849044 original size:26 final size:26
Alignment explanation
Indices: 3849008--3849060 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3848998 GTTGACTTAG
3849008 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
3849034 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
3849060 G
1 G
3849061 ATCGGACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:3849712 original size:26 final size:26
Alignment explanation
Indices: 3849682--3849734 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
3849672 GTTGGCCTAG
*
3849682 GCATACGGAGTTCATTCCCAA-TCTAA
1 GCATACGAAGTTCATT-CCAAGTCTAA
*
3849708 GCATACGAAGTTGATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
3849734 G
1 G
3849735 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:3851453 original size:26 final size:26
Alignment explanation
Indices: 3851424--3851474 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3851414 TGACTTAGAA
*
3851424 ATACGGAGTTCATTCCCAGTCTAAGG
1 ATACCGAGTTCATTCCCAGTCTAAGG
3851450 ATACCGAGTTCATTCCCAGTCTAAG
1 ATACCGAGTTCATTCCCAGTCTAAG
3851475 ATCGAACCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACCGAGTTCATTCCCAGTCTAAGG
Found at i:3852356 original size:26 final size:26
Alignment explanation
Indices: 3852326--3852378 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3852316 GTTGACTTAG
3852326 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
3852352 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3852378 G
1 G
3852379 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3853037 original size:26 final size:26
Alignment explanation
Indices: 3853001--3853053 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3852991 GTTGACTTAG
* *
3853001 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
3853027 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
3853053 G
1 G
3853054 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:3854886 original size:26 final size:26
Alignment explanation
Indices: 3854856--3854908 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3854846 TTTGACTTAG
3854856 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3854882 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3854908 G
1 G
3854909 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3857875 original size:873 final size:873
Alignment explanation
Indices: 3855221--3859996 Score: 5907
Period size: 878 Copynumber: 5.4 Consensus size: 873
3855211 AAATGATCAC
* * * *
3855221 AAAAATTACAAGGATCCCGTCTACCAAGTTTGGGTCCAAAACTCCCTCCGAAAAAATTTTAAAAA
1 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
*** * * * *
3855286 ATCTAAAACCATAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGATTTGTCTTGCCATGAAAC
66 ATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
**
3855351 TTCACGTGAAGGCTTAAGGGACCATCATATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
131 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * * *
3855416 GAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCAACCCATCT
196 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * ** * * * * *
3855481 CTCTGGCCGACGTAGCGCCTGCCTGCCACCTACCCACTCATTTCATCAGTTGTCTTAGGCATACC
261 CTCTGGCCGACGTAGTGCCTGCC-CCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
* ** * ** ** * *
3855546 TAGTTCATTCTTAGTCTAAGATCAGACCGAATTGAGGGTTACGATAGCAGGATCGATAGTACGTA
325 GAGTTCATTCCCAGTCTAAGATCAGACCG-ATCGAGGGTTGTGATAGCAGGATCGGCAGCACGCA
* ** * * * * * *
3855611 GAGGGGGACCCGACTGATCCCCGGCTTAAGCATCCCACCCATCTGGCTGGTTGAACGCCCGTACG
389 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * *
3855676 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCCAATTTAAGATCGGATCAAACCGAG
454 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACCGAG
* * * *
3855740 AGATGCGACAGCAGA--CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACC
519 GGTTGCG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
* * * * **
3855803 ATCGTCGAAGCATCGCCAGAGAACCTGACCGGCGGCGTTGGGGTTCC---GAT-GA--TTG--GG
583 ATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAAGATCGAGGGGGCCGG
* * * *
3855860 GGGGTGTGCGGACATAATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGACCGCTATCCCT
648 GGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
** *
3855925 CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGT
713 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
3855990 AGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
778 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
3856055 GTTTTTAGCTGAATTTTTTTGTGCATGCCAA
843 GTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
3856086 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCTTTCCCAAAAAATTTTAAAAA
1 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
*** * * *
3856151 ATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTACCATGAAAA
66 ATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* ***
3856216 TTCACGTGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATA
131 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
**
3856281 GAAATATGAAGATGTGATTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
196 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* ** * * *
3856346 CTCTGG-CTAGCGTAGTGCCTGCCCGCC-CGCCTGCTGGCTCGTTTTATCGATTGGCTTGGGCAT
261 CTCTGGCCGA-CGTAGTGCCTGCCC-CCAC-CC-GCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
* **
3856409 ACGGAGTTCATTCCCAGTCTAAGATTAGACCGGATCGAGGGTTGTGGCAGCAGGATCGGCAGCAC
322 ACGGAGTTCATTCCCAGTCTAAGATCAGACC-GATCGAGGGTTGTGATAGCAGGATCGGCAGCAC
** * * *
3856474 GCAGAGGGGGACCCGACCGATCCCTAGCTTGCGCATCTCGCCCCTCTGGCCGACTGAGCGTCCGC
386 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* ** ** * *
3856539 ACACTCGTTTCGTGGGTTGACTTAGAAAGGCAGAGTTCATTCCCAATCTAAGATCGGACCAGACC
451 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACC
* * *
3856604 GAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCACTTTTCTTCGTCGGGGC
516 GAGGGTTGC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGC
* * * * * *
3856669 ACCATCGTTGGAACATCGCCGAAGAACCTGACCGGCGGCATTGGGGTTCTGATGATCG-GGGTGG
580 ACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAAGATCGAGGG-GG
* * * *
3856733 CTGGGGGGGTGTGCGCACATGATGTGCGATGGATACTGGTACTTGGCCCTTATATTGGCCCCCTA
644 C-CGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* **
3856798 TCCCTCATCAAACCTCACGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAATTTGCTG
708 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
3856863 CCAGTAACCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
773 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
3856928 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
838 TTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
3856964 CAAAAATTCAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATCCGAAAAAATTTTAAAAA
1 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * * *
3857029 ATCCCGAACCACAAAAAGTTTCGAAGATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
66 ATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
3857094 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCATGCA
131 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * *
3857159 GAAATAT-AATGATGTGCCTAAACTCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGCC
196 GAAATATGAA-GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
3857223 TCTCTGGCCGACATAGTGCCTGCCCCCTCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACG
260 TCTCTGGCCGACGTAGTGCCTGCCCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
* * * * * *
3857288 GAGTTCACTCTCAGTCTAAGATCAGACCAGACCGACGGTTGTGGTAGCAGGATCGGCAGCACGTA
325 GAGTTCATTCCCAGTCTAAGATCAGACC-GATCGAGGGTTGTGATAGCAGGATCGGCAGCACGCA
* * * *
3857353 GAGGGGGACCCGGCCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACG
389 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* *
3857418 CTCGTTCCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACCGAG
454 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACCGAG
* * ** *
3857483 GGTTACAGCAGCACATACTGGGCTCAAGCATGTGCTGGTGCCGTA-TTTTCTTCGCCGGGGCACC
519 GGTTGC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
* * * *
3857547 ATTGTCGGAGTATCGTCGGAGAACCTAACCGGCGGCATTAGGGTTCCGAAGATCGAGGGGGCCGG
583 ATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAAGATCGAGGGGGCCGG
** *
3857612 GGGG-GTGCTTACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCT
648 GGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
3857676 CATCAAACCTCAAGAATTCACACCCCCTTACAGAGCATTTGAGATTTTACAGGATTGCTGCCAGT
713 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
3857741 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTTGA
778 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
*
3857806 GTTTTTAGCTGAATTTTTTTATGCATGCCAA
843 GTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
3857837 AAAAAATACAAGGATCATGTCTACCTAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
1 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * *
3857902 ATCCCGAACCAGAAAAAGTTTCAAAAATCTTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
66 ATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
3857967 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCGTGCA
131 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* *
3858032 GAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCT
196 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * * * *
3858097 CTCTGGCCGGCGTAGTGCC--CGCCCGCCCGTCCACTCGTTTCGTCGGTTGGTTTAGGCATACGG
261 CTCTGGCCGACGTAGTGCCTGCCCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
* * **
3858160 AGTTCATTCCCAGTCTAAGATC-GAACCGGA-CTAAGG--GT--T-GC--GA----CAGCATACA
326 AGTTCATTCCCAGTCTAAGATCAG-ACC-GATCGAGGGTTGTGATAGCAGGATCGGCAGCACGCA
* * * *
3858212 GAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGTGCCCGCACG
389 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
*
3858277 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
454 CTCGTTTCGTGGGTTGACTTAGGCATACGGAG----TT--CA-T-T---C---C------CA---
* * *
3858342 TCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCACATGCTAGGCTCGGGCATGTGCTGGT
496 --A-TCTAAGATCGGATCAGACCGAGGGTTG-CGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * * *
3858407 GCTGCATTTTTCTTCGCTGGGGCACCATCGTTGGAGCATCGTCGGAGAACCTGACCGACAGTATT
557 GCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATT
* * * ** * *
3858472 GGTGTTCCTGCA-ATCGGGGGGGTTGGGGGGTGTGCACACATGATGTGGGATGGGTGCTGGTACT
622 GGGGTTCC-GAAGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACT
**
3858536 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCAT
686 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
*
3858601 TTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
751 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
*
3858666 ATGGTCACAAAATCTTGTACACCTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
816 ATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
3858724 ACAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCAAAAAAATTTTCAAAA
1 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
** ** *
3858789 ATCCCGAACTGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAATCGTCTTGCCATGAAAC
66 ATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
3858854 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
131 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* ** *
3858919 GAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATGAACGGCTTGTGCATCCCGTCT
196 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
** * * * * * * * *
3858984 CTCCAGCTGGCGTAGTGCCCGCCCACTCGCCGGCCCGTTCGTTTCATCGATTTGCTTAGGCATAC
261 CTCTGGCCGACGTAGTGCCTGCCC-C-CACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
* * * *
3859049 GGAGTTCATTCCTAGTCTAAGATCAGACCGAAAT-GA-GGTTGCGATAGCAGGATCGGTAGCATG
324 GGAGTTCATTCCCAGTCTAAGATCAGACCG--ATCGAGGGTTGTGATAGCAGGATCGGCAGCACG
** * *
3859112 CAGAGGGGGACCCGGTCGATCCCCGGCTTGCACATCCCGCCACTCTGGCCGGCTGAGCGCCCGCA
387 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
3859177 CGCTCATTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTAAT
452 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CC---C-AATC-TA---AG---A-
* * * **
3859242 TCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGATAGCACATGCGGGGCTCGAGCATGTGCCA
504 T--C-G-----GATCAGA-C---C-GAGGGTTGCG-CAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * * * *
3859307 GTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTTGGAGAACCTGATCGGCGACA
555 GTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCA
* * * *
3859372 TTGGGGTTCCGACGATCGAGGGGGCCGAGGAGGGCTGTGCGCAAATGATATGTGATGGGTGCTAG
620 TTGGGGTTCCGAAGATCGAGGGGGCCG-GG-GGG-TGTGCGCACATGATGTGTGATGGGTGCTGG
* * *
3859437 TACTTGGCCCTTATATAGGCCCCCTATCCCTCATTAAACCTCAAGAACTCACACCCGCTTAAAGA
682 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
*
3859502 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTT
747 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * * *
3859567 TCAAATGGTCACAAAATCTTGTAGATTTTGAGTTTTTAGCTAAATGTTTTTATGCATGCCAA
812 TCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * ** *
3859629 TAAAAATACAAGGATCATGTCTACCAAGTTCGAAGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
1 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * * ** * *
3859694 ATCCCCAATCGTAAAAAGTTTTGAAAATCATGAAAAAGAGAAAAAGAGTCGTCTTGCCATGAAAC
66 ATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* **
3859759 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCGGCACACA
131 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* *
3859824 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTT-AGCATCCCGTCT
196 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
** * * *
3859888 CTCTGGCCGGTGTAGTGCCCGCCCGACCACCCACCGGCTCGTTTCATCGGTTGGCTTAGGCATAC
261 CTCTGGCCGACGTAGTGCCTGCCC--CCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
* *
3859953 GGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGCTTGTG
324 GGAGTTCATTCCCAGTCTAAGATCAGAC-CGATCGAGGGTTGTG
3859997 GCAGCACATG
Statistics
Matches: 3379, Mismatches: 427, Indels: 170
0.85 0.11 0.04
Matches are distributed among these distances:
859 92 0.03
863 4 0.00
864 3 0.00
865 253 0.07
866 155 0.05
867 37 0.01
868 3 0.00
869 84 0.02
870 6 0.00
871 63 0.02
872 3 0.00
873 461 0.14
874 8 0.00
875 67 0.02
876 237 0.07
877 6 0.00
878 468 0.14
879 4 0.00
881 1 0.00
882 3 0.00
884 1 0.00
885 59 0.02
886 73 0.02
887 468 0.14
888 1 0.00
889 4 0.00
890 2 0.00
891 59 0.02
892 5 0.00
893 1 0.00
894 1 0.00
895 2 0.00
896 4 0.00
897 6 0.00
898 5 0.00
901 3 0.00
902 197 0.06
903 4 0.00
904 94 0.03
905 432 0.13
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (873 bp):
AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
ATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGGCCGACGTAGTGCCTGCCCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCGATCGAGGGTTGTGATAGCAGGATCGGCAGCACGCAGA
GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGGG
TTGCGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC
GTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAAGATCGAGGGGGCCGGGGG
GTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
CAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTT
TTTAGCTGAATTTTTTTGTGCATGCCAA
Found at i:3858329 original size:26 final size:26
Alignment explanation
Indices: 3858299--3858351 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3858289 GTTGACTTAG
3858299 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3858325 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3858351 G
1 G
3858352 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3858748 original size:887 final size:883
Alignment explanation
Indices: 3855222--3859980 Score: 5542
Period size: 887 Copynumber: 5.4 Consensus size: 883
3855212 AATGATCACA
* * *
3855222 AAAATTACAAGGATCCCGTCTACCAAGTTTGGGTCCAAAACTCCCTCCGAAAAAATTTTAAAAAA
1 AAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
*** * * * *
3855287 TCTAAAACCA-TAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGATTTGTCTTGCCATGAAAC
65 TCCCGAA-CAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
**
3855351 TTCACGTGAAGGCTTAAGGGACCATCATATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
129 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * * *
3855416 GAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCAACCCATCT
194 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * * * * * * *
3855481 CTCTGGCCGACGTAGCGCCTGCCTGCCACCTACCCACTCATTTCATCAGTTGTCTTAGGCATACC
259 CTCTGGCCGGCGTAGTGCCCGCCCGCC-CGT--CCGCTCGTTTCATCGGTTGGCTTAGGCATACG
* ** * * * * * * * **
3855546 TAGTTCATTCTTAGTCTAAGATCAGACCGAATTGAGGGTTACGATAGCAGGATCGATAGTACGTA
321 GAGTTCATTCCCAGTCTAAGATCAGACCGGACTCAAGGTGATG-TAGCA-GATC---AGCACACA
* ** * * * ** * *
3855611 GAGGGGGACCCGACTGATCCCCGGCTTAAGCATCCCACCCATCTGGCTGGTTGAACGCCCGTACG
381 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACG
* *
3855676 CTCATTTCGT-GG--G--TT--G---AC-----TT-AG--GCATACGGAGTTCA-TCCCAATTTA
446 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGATTCAGTTGCATACGGAGTTCATTCCCAATCTA
* * * * *
3855722 AGATCGGATCAAACCGAGAGATGCGACAGCAGA--CTGGGCTCGGGCATGTGCTGGTGCCGCATT
511 AGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * * * *
3855785 TTTCTTCACCGGGGCACCATCGTCGAAGCATCGCCAGAGAACCTGACCGGCGGCGTTGGGGTTCC
576 TTTCTTCGCTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC
* * * *
3855850 G-AT-GA----TTGGGGGGGTGTGCGGACATAATGTGTGATGGGTGCTGGTACTTGGCCCTTATA
641 GAATCGAGGGGGTCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATA
* * *
3855909 TTGGACCGCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
706 TTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
3855974 CAGGTTTGCTGTCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
771 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
3856039 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAC
836 ATCTTGTACACTT-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAC
* * *
3856087 AAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCTTTCCCAAAAAATTTTAAAAAA
1 -AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * * *
3856152 TCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTACCATGAAAAT
65 TCCCGAACAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* ***
3856217 TCACGTGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
130 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
**
3856282 AAATATGAAGATGTGATTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
195 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
** * * * * *
3856347 TCTGGCTAGCGTAGTGCCTGCCCGCCCGCCTGCTGGCTCGTTTTATCGATTGGCTTGGGCATACG
260 TCTGGCCGGCGTAGTGCCCGCCCGCCCG--T-C-CGCTCGTTTCATCGGTTGGCTTAGGCATACG
* * * *
3856412 GAGTTCATTCCCAGTCTAAGATTAGACCGGA-TCGAGGGTTG-TGGCAGCAGGATCGGCAGCACG
321 GAGTTCATTCCCAGTCTAAGATCAGACCGGACTC-AAGG-TGAT-GTAGCA-GAT---CAGCACA
** * *
3856475 CAGAGGGGGACCCGACCGATCCCTAGCTTGCGCATCTCGCCCCTCTGGCCGACTGAGCGTCCGCA
379 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCA
*
3856540 CACTCGTTTCGTGGGTTGAC-T-----TA--GA-A---AG--GC--A--GAGTTCATTCCCAATC
444 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGATTCAGTTGCATACGGAGTTCATTCCCAATC
* *
3856587 TAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCA
509 TAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * * *
3856652 CTTTTCTTCG-TCGGGGCACCATCGTTGGAACATCGCCGAAGAACCTGACCGGCGGCATTGGGGT
574 TTTTTCTTCGCT-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGT
* * * * *
3856716 TCTGATGATCG-GGGTGGCTGGGGGGGTGTGCGCACATGATGTGCGATGGATACTGGTACTTGGC
638 TCCGA--ATCGAGGG-GG-TCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGC
* *
3856780 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCACGAACTCACACCCCCTTAAAGAGCATTTGA
699 CCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGA
** *
3856845 GATTTTACAAATTTGCTGCCAGTAACCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
764 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
3856910 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAC
829 TCACAAAATCTTGTACACTT-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAC
* * *
3856965 AAAAATTCAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATCCGAAAAAATTTTAAAAAA
1 -AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * *
3857030 TCCCGAACCA-CAAAAAGTTTCGAAGATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
65 TCCCGAA-CAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
3857094 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCATGCA
129 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * *
3857159 GAAATAT-AATGATGTGCCTAAACTCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGCC
194 GAAATATGAA-GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * * *
3857223 TCTCTGGCCGACATAGTGCCTGCCCCCTCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACG
258 TCTCTGGCCGGCGTAGTGCC--CGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
* * * * *
3857288 GAGTTCACTCTCAGTCTAAGATCAGACCAGAC-CGACGGTTG-TGGTAGCAGGATCGGCAGCACG
321 GAGTTCATTCCCAGTCTAAGATCAGACCGGACTC-AAGG-TGAT-GTAGCA-GATCAGCA-CAC-
* * * * *
3857351 TAGAGGGGGACCCGGCCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCA
380 -AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCA
*
3857416 CGCTCGTTCCGTGGGTTG----A--C---C------T-AG--GCATACGGAGTTCATTCCCAATC
444 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGATTCAGTTGCATACGGAGTTCATTCCCAATC
* * * ** *
3857463 TAAGATCGGATCAGACCGAGGGTTACAGCAGCACATACTGGGCTCAAGCATGTGCTGGTGCCGTA
509 TAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * * *
3857528 -TTTTCTTCGCCGGGGCACCATTGTCGGAGTATCGTCGGAGAACCTAACCGGCGGCATTAGGGTT
574 TTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
* **
3857592 CCGAAGATCGAGGGGGCCGGGGGG-GTGCTTACATGATGTGTGATGGGTGCTGGTACTTGGCCCT
639 CCG-A-ATCGAGGGGGTCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCT
* * * *
3857656 TATATTGGGCCCCTATCCCTCATCAAACCTCAAGAATTCACACCCCCTTACAGAGCATTTGAGAT
702 TATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
*
3857721 TTTACAGGATTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
767 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
3857786 CAAAATCTTATACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAA
832 CAAAATCTTGTACAC-TTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAC
* *
3857839 AAAATACAAGGATCATGTCTACCTAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
1 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* *
3857904 CCCGAACCAG-AAAAAGTTTCAAAAATCTTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
66 CCCGAA-CAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
3857968 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCGTGCAG
130 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* *
3858033 AAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTC
195 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * *
3858098 TCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCACTCGTTTCGTCGGTTGGTTTAGGCATACGGAGT
260 TCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
*
3858163 TCATTCCCAGTCTAAGATC-GAACCGGACT-AAGG-G-T-T-GC-GA-CAGCATACAGAGGGGGA
325 TCATTCCCAGTCTAAGATCAG-ACCGGACTCAAGGTGATGTAGCAGATCAGCACACAGAGGGGGA
* * *
3858220 CCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGTGCCCGCACGCTCGTTTC
389 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTC
* * *
3858285 ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTA
454 GTGGGTTGACTTAGGCATACGGAG---ATT--CAGT-T--GCATACGGAGTTCATTCCCAATCTA
* * * *
3858350 AGATCGGATCGGACCGAGGGTTGTGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTGCATT
511 AGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * * *
3858415 TTTCTTCGCTGGGGCACCATCGTTGGAGCATCGTCGGAGAACCTGACCGACAGTATTGGTGTTCC
576 TTTCTTCGCTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC
* * * *
3858480 TGCAATCGGGGGGGTTGGGGGGTGTGCACACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTA
641 -G-AATCGAGGGGGTCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTA
*
3858545 TATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
704 TATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
3858610 TAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
769 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
3858675 AAATCTTGTACACCTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAC
834 AAATCTTGTACA-CTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAC
* * *
3858726 AAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCAAAAAAATTTTCAAAAAT
1 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* ** *
3858791 CCCGAACTGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAATCGTCTTGCCATGAAACTT
66 CCCGAACAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
3858856 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
131 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* ** *
3858921 AATATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATGAACGGCTTGTGCATCCCGTCTCT
196 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
** * * * * * *
3858986 CCAGCTGGCGTAGTGCCCGCCCACTCGCCGGCCCGTTCGTTTCATCGATTTGCTTAGGCATACGG
261 CTGGCCGGCGTAGTGCCCG--C-C-CGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
* * * * * **
3859051 AGTTCATTCCTAGTCTAAGATCAGACCGAAAT-GAGGTTG-CGATAGCAGGATCGGTAGCATGCA
322 AGTTCATTCCCAGTCTAAGATCAGACCGGACTCAAGG-TGATG-TAGCA-GATC---AGCACACA
** * * *
3859114 GAGGGGGACCCGGTCGATCCCCGGCTTGCACATCCCGCCACTCTGGCCGGCTGAGCGCCCGCACG
381 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACG
* * *
3859179 CTCATTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTAATTC
446 CTCGTTTCGTGGGTTGACTTAGGCATACGGAG---ATT--CAGT-T--GCATACGGAGTTCATTC
* * * * ** * * **
3859244 CCAGTCTAAGATCAGACCAGACTGAGGGTTGCGATAGCACATGCGGGGCTCGAGCATGTGCCAGT
503 CCAATCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * * *
3859309 GCCACATTTTTCTTCG-TCGGGGCACCATCGCCAGAGCATCGTTGGAGAACCTGATCGGCGACAT
568 GCCGCATTTTTCTTCGCT-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCAT
* * * *
3859373 TGGGGTTCCGACGATCGAGGGGGCCGAGGAGGGCTGTGCGCAAATGATATGTGATGGGTGCTAGT
632 TGGGGTTCCGA--ATCGAGGGGGTCG-GG-GGG-TGTGCGCACATGATGTGTGATGGGTGCTGGT
* * * *
3859438 ACTTGGCCCTTATATAGGCCCCCTATCCCTCATTAAACCTCAAGAACTCACACCCGCTTAAAGAG
692 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAG
*
3859503 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTT
757 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * * *
3859568 CAAATGGTCACAAAATCTTGTAGATTTTGAGTTTTTAGCTAAATGTTTTTATGCATGCCAATA-
822 CAAATGGTCACAAAATCTTGTACA-CTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AC
* * ** *
3859631 AAAATACAAGGATCATGTCTACCAAGTTCGAAGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT
1 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* ** * *
3859696 CCCCAATC-GTAAAAAGTTTTGAAAATCATGAAAAAGAGAAAAAGAGTCGTCTTGCCATGAAACT
66 CCCGAA-CAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* **
3859760 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCGGCACACAG
130 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* *
3859825 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTT-AGCATCCCGTCTC
195 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* **
3859889 TCTGGCCGGTGTAGTGCCCGCCCGACCACCCACCGGCTCGTTTCATCGGTTGGCTTAGGCATACG
260 TCTGGCCGGCGTAGTGCCCGCCCG--C-CCGTCC-GCTCGTTTCATCGGTTGGCTTAGGCATACG
3859954 GAGTTCATTCCCAGTCTAAGATCAGAC
321 GAGTTCATTCCCAGTCTAAGATCAGAC
3859981 TGGATCGAGG
Statistics
Matches: 3375, Mismatches: 401, Indels: 196
0.85 0.10 0.05
Matches are distributed among these distances:
859 72 0.02
861 2 0.00
862 4 0.00
863 3 0.00
864 2 0.00
865 250 0.07
866 138 0.04
867 40 0.01
868 4 0.00
869 86 0.03
870 10 0.00
871 64 0.02
872 6 0.00
873 459 0.14
874 15 0.00
875 63 0.02
876 219 0.06
877 4 0.00
878 464 0.14
879 1 0.00
880 9 0.00
885 76 0.02
886 73 0.02
887 467 0.14
888 1 0.00
889 1 0.00
890 1 0.00
891 62 0.02
892 1 0.00
893 1 0.00
895 1 0.00
896 2 0.00
898 2 0.00
899 1 0.00
900 3 0.00
901 3 0.00
902 250 0.07
903 5 0.00
904 84 0.02
905 424 0.13
906 2 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (883 bp):
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
CCCGAACAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCGGACTCAAGGTGATGTAGCAGATCAGCACACAGAGGGGGACC
CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGT
GGGTTGACTTAGGCATACGGAGATTCAGTTGCATACGGAGTTCATTCCCAATCTAAGATCGGATC
AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCT
GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAATCGAGGG
GGTCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
ATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAC
Found at i:3859237 original size:26 final size:26
Alignment explanation
Indices: 3859201--3859253 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3859191 GTTCACTTAG
*
3859201 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
3859227 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
3859253 G
1 G
3859254 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:3860850 original size:26 final size:26
Alignment explanation
Indices: 3860821--3860873 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3860811 GTTAACTTAG
*
3860821 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3860847 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3860873 G
1 G
3860874 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3861750 original size:26 final size:26
Alignment explanation
Indices: 3861713--3861765 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3861703 GTTGACTTAG
3861713 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
3861739 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3861765 G
1 G
3861766 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:3862640 original size:26 final size:26
Alignment explanation
Indices: 3862610--3862688 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
3862600 GTTGACTTAG
3862610 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3862636 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
3862662 GTATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3862688 G
1 G
3862689 ATCGGACCGC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3863562 original size:26 final size:26
Alignment explanation
Indices: 3863526--3863578 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3863516 CTTGACTTAG
*
3863526 GCATATGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
*
3863552 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
3863578 G
1 G
3863579 ATTGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:3864050 original size:902 final size:902
Alignment explanation
Indices: 3859947--3873254 Score: 16633
Period size: 902 Copynumber: 14.8 Consensus size: 902
3859937 GTTGGCTTAG
** * * *
3859947 GCATACGGAGTTCATTCCCAGTCTAAGATC-AGACTGGATCGAGGCTTGTGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * ** * * *
3860011 GCTCGAGCATATGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCACCAGAGCATCGCCAGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAG
* * * *
3860076 AACCTGACCAACGGCATTTGGGTTCTGACGATCGGGGTGGACGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGGC-GGGGGGTGTGCGCACATGATGT
** * * * * * * *
3860141 GCGATGGGTGCTTATATTTGGCACTTATATTGGCCCCCCATCCCTCATTATACCTCAAGAACTCG
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
3860206 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
3860271 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
* * * * *
3860336 ATGCATGCCAACAAAAATACAAGGATCACATCTACCATGCTTGGGGCCAAAACTTCTTTCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* ** * * *
3860401 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAGT-GATGAAAAATAAAAAAAGAGTCGTC
453 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCG-TGAAAAATAGAAAACGAGTCGTC
* * * * *
3860465 TTGCCATGAAGCGTCATGTGAAGGCTTATGGGACCATTGTATGAATTTACAGGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * * * * * *
3860530 CATTGGCACATAGAAATATAAAGATCTTCCTAACCCCACCCACCACCCCATTGATCCACGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
3860595 CGCATCCCGTCTCTCTGGCCGGGGCAGTG--C-CC-GCCCGCCCACCCGCTCGTTTCGTCGATTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * *** * *
3860656 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGATCAGATTGAGGGTTGTGGCAGCAGG
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGA-ACCAGACCAAGGGTTGCGGCAGTAGG
** * * * ** * *
3860720 ATCTACAGCATGTAGAGGGGGACCCGACCGATCCTTGGCTTGTGCATCCCGCCCCTCTGGCCGAC
776 ATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
3860785 TGAGCACCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTTATTCCCAGTCTAA
841 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
3860847 GCATATGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
3860912 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGG----A--A-C----CATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * ** * * * *
3860966 ACCTGACC-AGCGGCATCGAGGTTCCGGTGATCGGGGGGCCGGGGGGGTGTGCGCATAAGAGGTG
131 ACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGC-GGGGGGTGTGCGCACATGATGTG
* *
3861030 TGATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
3861095 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
3861160 GGGGACACTTTTTTCTATTGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTGTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
* * * * *
3861225 TGCATGCCAAAAAAAATACAAGGATCGCGTCTATCAAGTTTGGGGCCAAAACTCCATCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * * *
3861290 ATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
3861355 GCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
3861420 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * ** *
3861485 CATCCCGTCTTTCTGGCCGGCGTAGTTCTCGCCCGCCCGCCCGCTGGCTCGTTTCATCGGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * * * *
3861550 TTACGCATATGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCAAGGGTTACGGTAGTAGGATC
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCAAGGGTTGCGGCAGTAGGATC
* * * * *
3861615 GGCAGCATGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCAT-GCGACCCCTCTGGCCGACTG
779 GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCG-CCCCTCTGGCCGGCTG
* * * * * *
3861679 AGTGCCTGCTCGGTCGTTTCGTAGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
3861739 GCATACGGAGTTCGTTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
3861804 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCG-CTGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTC-GGAG
* * * * * *
3861868 AACCTGACCGGCGACATTAGGGTTCCGACGATCGGGGGGCCGAGGGGGGCTGTGCGCAAATGATA
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG--GCGGGGGG-TGTGCGCACATGATG
* *
3861933 TGTGATGGGTGCTGGTACTTGGCCCTTATATAGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
3861998 ACACCCGCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTACCATTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
3862063 ATGGGGACACTTTTTTCAAATGGTCACCAAATCTTGTACACTTCT-AGTTTTTAGCTGAATTGTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-TGAGTTTTTAGCTGAATTTTT
* * * *
3862127 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* * * * **
3862192 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAATACGAGTCAC
451 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * * *
3862257 CTTTCCATGAAACTTCGCGTGAAGGCTTAACGGACCACTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
3862322 GCATTGGCATGCAGAAAGATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
581 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * * *
3862387 GCGCATCTCATCTCTTTGGCTGGCATAGTGCCCGCCT--------GCCTGCTCGTTTTGTTGGTT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
*** * * * ** *
3862444 GGCTTAATTATAGGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCAGCAGTAGG
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCAAGGGTTGCGGCAGTAGG
* * * ** *
3862509 ATTGGTAGCACGCAGAGGGGGACTCGATCGATCCCCGATTTGCGCATCCCTCCCCTCTGGCCGGC
776 ATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
*
3862574 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
3862636 GCATACAGAGTTCATTCCCAGTCTAAGTATACGGAGTTCATTCCCTGTCTAAGATCGGACCGCGA
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-GA----A--------C------C--A----GA
* * * * *
3862701 CCGAGGGTTGTGGCAGCAC--G-TAGGCTCGGGCATGTGCTTG-GCCGTATTTTATCTTCGTCGA
39 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT-TCTTCGTCGG
* * **
3862762 GG------CACC--AGCATCGTCAGAGAACCCTGA-CGACGG-ATTAGGGTCTCCGACGATTTGG
103 GGCACCATCACCGGAGCATCGTCGGAGAA-CCTGACCGACGGCATTGGGGT-TCCGACGATCGGG
* * * *
3862817 GGGTCAGGGTGGTGCTGCGCA-ATGATGTTGTGATGGGTGCT-GTACTCGGCCCTTATATTGGCC
166 GGGGC-GGGGGGTG-TGCGCACATGATG-TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * *
3862880 CGCTATCCCT-ATCAAACCTTGAGAACTCACACCCCCTT-AA-AGCATTTGAGATTTTCAACA-A
228 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT--ACAGG
**
3862941 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGG
291 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* ** *
3863006 TGTACACTTTGAGTTTTTAGCTGAATTTCTTTGTGCCGGCCAAGAAAAATACAAGGATCACGTCT
356 TGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
*
3863071 ACCAAGTTTGGGGCCAAAACTCCTTTC-AAAACATTTTAAAAAATCTCGAACCGCAAAAAGTTTC
421 ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTC
* **
3863135 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGAATTAAGGGAC
486 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * *
3863200 CATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGCTGTGCCTAAA
551 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
*
3863265 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
616 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * * *
3863330 CTGCCCACCCGCCCGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGA
681 CTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * *
3863395 TTGAACCAGACCAAGGGTTGTGACAGTAGGATTGGCAGCACGCAGAAGGGGACCCGACCGATCCC
746 TTGAACCAGACCAAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCC
* * * *
3863460 CGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGCTTGACTTA
811 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* *
3863525 GGCATATGGAGTTCATTACCAGTCTAA
876 GGCATACGGAGTTCATTCCCAGTCTAA
*
3863552 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
3863617 CTCGGGCATGTGCTGGTGCCCCATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATTGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
*
3863682 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC-GGGGGGTGTGCGCACATGATGTGC
* *
3863747 GATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
3863812 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATA
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * ** * *
3863877 GGGACACTTTTTTCTAATGGTCGCAAAATGTTGTACGGTTTAAGTTTTTAGCTGATTTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
* * * *
3863942 GCAAGGCAGCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-AAAACA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
*
3864006 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
3864071 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
3864136 TGGCACACAGAAATATGAAGCTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
3864201 ATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCTGCCCGGCCGCCCGTTCGTTTCGTTGGTTGGCT
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * *
3864266 TAGGCATACGGAGTTCATTCCCAGTCTATGATCGAACCAGACCAAGGGTTGCGGCAGCAGGATTG
715 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCAAGGGTTGCGGCAGTAGGATCG
*** * * * *
3864331 GCAGCACGCAGAAATGGACTCGACCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAG
780 GCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * *
3864396 CGCCCACACGCTCCTTTCGTGGCTTGACTTAGGCATATGGAGTTCATTACCAGTCTAA
845 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
3864454 GCATATGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
3864519 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
*
3864584 ACCTGATCGACGGCATTGGGGTTCCGACGATC-GGGGGGCTGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC--GGGGGGTGTGCGCACATGATGTG
*
3864648 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
3864713 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * * * *
3864778 GGGGACACTTTTTTCTAATGGTCACAAAATTTTGGACAGTCTGATTTTTTAGCTGAATTTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
*
3864843 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTTCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* ** *
3864908 ATTTTAAGAAATCTCGAACCAAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGATTCGTCTT
454 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
3864973 GCCATGAAACTTCACGTGAAGG-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * *
3865037 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGCA
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
3865102 CATCCCGTCGCTCTGGCCTAGCATA-TGGCCCGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTG
649 CATCCCGTCTCTCTGGCC-GGCGTAGT-GCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
** * * * * * *
3865166 GCTTAGGCATACAAAGTTCATTCCCAG-CTAAGATCGGACC-GGCCTGAGGGTTGTGGCAGCAGG
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACC-AAGGGTTGCGGCAGTAGG
* * * * * *
3865229 ATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAGCTCGCCCCTCCGACCGGC
776 ATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
3865294 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTCAGGCATAC-AAGTTCGTTCCAAGTCTAA
841 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * *
3865355 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTACAGTAGCACATGCTGTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
3865420 CTCGAGCAGGTGCTGGTGCCGCATTTTTCTTCGTCGGGG------CA-C----CATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * * * * *
3865474 ACCTGACTGGCGGCATTGGGGTTCCAATGATCAGGGGGGTC-GGGGGTGTGCGCACATGATGTGA
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGGCGGGGGGTGTGCGCACATGATGTGC
* * *
3865538 GGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
3865603 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
3865668 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTATGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
* *
3865733 GTATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCTGAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAA
* * * * * *
3865797 CTTTTAAAAAATATCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAATGAGTCATCTT
454 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * **
3865862 GCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGTG
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * *
3865927 TTGGCACATAGACATATGAAGATGTGCCTAAACCCACCTACCACCTTATAGATCCACGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
3865992 CATCCCGTCTCTCTGGACGACGTAGTG--C-CC-GCCCGCCCGTCCGCTCGTTTCGTCAGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * *** * *
3866053 TTAGGCATACGGAGTTCATTCCGAG-CTAAGA-TCAGATCGGATTGAGGGTTGTGGCAGCAGGAT
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGA-ACCAGACCAAGGGTTGCGGCAGTAGGAT
* * * * * *
3866116 CAGCAGCACGTAGAGGGGGACCCGA-CTATCCCCGGCTTGCGTAGCCTGCCCCTCTGGCCGGCTG
778 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * *
3866180 AGCGCCCGTACGCTTGTTTTGTGGGTTGACTCAGGCATACGAAGTTCATTCCCAGTCTAA
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** ** *
3866240 GCATACGGACTTCATTCCCAGTCTAAGATCGGCCCAGACCGAGGGTAACAGG-AGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGC-GGCAGCACATGCTGG
* * ** * * *
3866304 GCTTGGG-ATTGTGCTGGTGCCACATTTTTCTTCCCCGAGGCACCATCGCTGGAGCATCGTCGGA
65 GCTCGGGCA-TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGA
* * *
3866368 GAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGCTGTCCGCACATGATGT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGG-TGTGCGCACATGATGT
* *
3866433 GCTATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
3866498 CACCCCCTTAAAGAGCAATTGAGATTTTATAGGTTTGCTACCAGTAG-CATTTGAAAAAAGTGTC
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TT----AAAGTGTC
*
3866562 TGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT
318 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT
* * * *
3866627 TTTTTATGCATGCCAAGAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
383 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
* * * * *
3866692 GAATAAATTTTAAAAATTC-CAAACCGGAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
448 GAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
*
3866756 CGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
513 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
3866821 ATGGCATTGGCATGCAGAAATGTGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCATGG
578 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
** * * * * * *
3866886 CTTATGCGTCCCGTCTCTCTGGCCGACGTAGTGCCC-ACTCGCCCACCCGCCCACTTGTTTCGTC
643 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCT-GCCCGCCCGCCCGCTCGTTTCGTC
* * *** * *
3866950 GGTTGGCTTAGGCACACGGAGTTCATTCCCAGTCTAAGATCCG-ACCAGATTGAGGGTTGCAGTA
707 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGAACCAGACCAAGGGTTGCGGCA
* * * * * *
3867014 GCAGAATCGACAGCACACAGAGGGGGACCC-AGTCGATCCTCGGCTTGTGCATCCCGCCCCTCTG
771 GTAGGATCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * *
3867078 GCCGGCTGAGCGCCCTCACGCTCATTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTC
835 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
3867143 TAA
900 TAA
* * * * * * * * * *
3867146 GCATACGAAGTTCTTTCTC-GATCTAAAATCGGATCGGATCGAGGGTTGCGACAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAG-TCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * ** *
3867210 GCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCACCAGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAG
* * * * * *
3867275 AACCTGATCGGCGGCATTGGGGTTCCGGCGATTGGGGGGTCCGGGGGGATGTGCGCAAATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-GCGGGGGG-TGTGCGCACATGATGT
* * * *
3867340 GCAATGGTTGCTGGCACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
3867405 CTCCCCCTTCAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCCATTAAAGTGTCCGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
3867470 TGGGGACACTATTTTCAAATGATCACAAAATCTTGTACACTTAGAGTTTTTCGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TTTTTT
* * *
3867535 TTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAACTCC-TTCTGAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAA
* * * *
3867599 AAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTTCGAAAATCATGAAAAATAGAAAACAAGTCG
451 AAAATTTTAAAAAATCTCGAACCGCAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
3867664 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
3867729 GGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
580 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * * * *
3867794 TACGCATCCCCTCTCTCTGGCAGGTGTAGTGCCCACCTGCCCGTCCGCCCGCTTGTTTTGTCAGT
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGT
* *** *
3867859 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATTGAGGGTTGCGGCAGCAG
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCAAGGGTTGCGGCAGTAG
* * * * * *
3867924 GATTGGCAGCGCACAGAGGGGGACCCGATCGATCCTCGACTTGCGTATCCCGCCCCTCTGGCCGG
775 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
3867989 CTGAGCACCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
840 CTGAGC-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
3868053 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTAAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** **
3868118 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATTGGAGCATCG-CTGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTC-GGAG
* * *
3868182 AACCTGACCGACGGCATTGGGGTT-C--CGA-C----GGTCAGGGGGTGTACGCACATGATGTGC
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGC
*
3868239 GATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
3868304 CCCCCTTAAAGA-CTATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
260 CCCCCTTAAAGAGC-ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
3868368 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
* *
3868433 TGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCC-TTC------
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * * * *
3868491 -----CAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCATTTT
454 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
3868551 GCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATATAAAA-GCC
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA-AAAATGGC
* * * *
3868615 ATTGGCACGTAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTAACTATCCACGGCTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * *
3868680 GCATCCCCTTTCTCTGGCCGACGTAGTGCCCGCCGGCTCGCCCG-TCGTTTCATTTCGTCGGTTG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCG-CTCGTTTCGTCGGTTG
* * *
3868744 GCTTACGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCAAGGG-T-------T---A
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCAAGGGTTGCGGCAGTAGGA
* * *
3868798 -CGGCAGCACACAGAGGGGGACCC-AGCTGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGC
777 TCGGCAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
3868861 TGAGCCCCCGCTCGCTCGTTTCATGGGTTGAC---GGCATACAGA-TGTCATTCCCAGTCGAA
841 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT-TCATTCCCAGTCTAA
* * * * * *
3868920 GCATATGGAGTTCTTTCCCAGTCTAGGATC-AGACCAGACTGAGGGTTACGGCAGAACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * ** * *
3868984 GCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCACCAGGGCACCATCATCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAG
* * * *
3869049 AACCTGACTGACGGTATTGGGGTTCCGATGAT--------CGGGGGGTGTGCGCACATGATGTTC
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGC
*
3869106 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
3869171 CCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CATTAAAGTGTCT-AACAT
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA-AT
*
3869234 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
* * * * *
3869299 TGCATGCCAAAAAAAATACAAGGATAACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * *
3869364 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
3869429 GCCATGAAACTTCATGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
3869494 TTAGCACGTAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * *
3869559 TATCCCCTCTCTCTGGTCAGTGTAGTGCCCGCCGGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * *
3869624 TTAGGCATACGAAGTTCATTCCCAGTCTAAGA-TCAGACCAAACCAAGGGTTACGGCAGTAGGAT
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGA-ACCAGACCAAGGGTTGCGGCAGTAGGAT
* * ** * * * * * *
3869688 CGACAGCACGTAGAGGGACACCCGGTCGATCCTCGGCTTGCACATCCCACCCTTCTGGGCGGCTG
778 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
3869753 AGTGCCCGCACGCTCGTTTCGTGCGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** * * * *
3869813 GCATACGGAGTTGATTCTCAGTCTAAGATCGGATCAGAATGATGGTTGCGGTAGAACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** **
3869878 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * *
3869943 ACCTGACCGACGGTATTGGGGTT-CTAGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGG-CGGGGGGTGTGCGCACATGATGTG
* * * *
3870007 TGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCAT
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
3870072 AGCCCCTTAAAAAGCATTTGAGATTTTGCAGGTTTGCTGCCAATAGCAATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*** *
3870137 GTTTACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
* * * ** * *
3870202 TGCATGCCAGCAAAAATACAAGGATCATGTCTAACAAGTTTGGGGCCAAAACAACTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * *
3870267 ATTTTAAAAATTCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
3870332 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
3870397 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCCATGACTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
3870462 CATCCTGTCTCTCTGACC-G-GTA-T---AG--TGCCCGCCCGCCCGCTCATTTCGTCCGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* *
3870519 TTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCAGACTGAA-GGTTGCGGCAGTAGGA
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGA-ACCAGAC-CAAGGGTTGCGGCAGTAGGA
* * ** * * * * **
3870582 TCGGCAGTATGCAGATAGGGACCCGATCGATCCCCGACTTACGCATCCCGCCCCTTTCGTTGGCT
777 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
*** * *
3870647 GAATACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
842 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ***
3870708 GCAAATGGAGTTCATGCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * ** *
3870773 CTCGGGCAAGTACTGGTTTCGCATTTTTCTTCGCCGGGGCACCATCGTCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * * * * * *
3870838 GCCTAATCGACGGCATTGAGGTTTCGACGATCGGGGGGGTCGGGGGGTGTGGGCACATGATGTAC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGTGTGCGCACATGATGTGC
3870903 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * **
3870968 CCCCCTTAAAGAGAATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTCCAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
3871033 GGGACACTTTTTTCATATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTAAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
* *
3871098 GCATGCCAA-TAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTT-GAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG-AAAAA
* * *
3871161 ATTTTAAAAAATCTCGAACTGTAAAAAGTTTCGAAAATCGTG-AAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
3871225 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
3871290 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
3871355 CATCCCGTCTCTCTGGCCGGCATAGTG-CC-CAT--CCG-CCG---ACTCGTTTCGTCCGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * ** * * * *
3871412 TTAGGCATACGGTGTTCATTCCCAGTCTAAGA-TCAGACTGGACCGAGGGTTACAGTAGTAGGAT
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGA-ACCAGACCAAGGGTTGCGGCAGTAGGAT
** * * * * * * * *
3871476 CGATAGCACACAAAAGGGGACCCGATC-AACCCCGACTTGCGCATCCCACCCCTCTGGTCGGATG
778 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
3871540 AGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTTATTCGCGGTCTAA
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
3871600 GCATACGGAGTTCATTCCCAGTCTAATATC-AGATCAGACCGAGGGTTGCAGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
3871664 GCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCCTGGGCACCATCACCGTAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAG
* * * *
3871729 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GAGGGGCGGGGGTTGTGCACACATGATGTCC
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGC
* *
3871793 GATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
3871858 CCCCCTTAAACAGCATTTGAGAGTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
3871923 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
3871988 GCATGCCAATAAAAATACAAGGATCATGTCTACCAGGTTTGGGGCCAAAACGCCTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
* * * ** * *
3872053 TTTTAAAAAATCCCAAACCGCAAAAAATTTCAAAAATCGAAAAAAATAGAAAACGAGTTGCCTTG
455 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
3872118 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
3872183 TGGCACGTAGAAATATGAAGATATGTCTAAACCCACCTACCACACTATCGATCCACGGCTTGCGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
*
3872248 ATCCCGTCTCTCAGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGTCCATCCGCTCGTTTCGTC
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCT----GCCCGCCCG--C--CCGCTCGTTTCGTC
* * * ** * *
3872313 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGA-TCAGA-CTGAACTGAGGGTTACGGT
707 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGA-ACCAG-ACCAAGGGTTGCGGC
* * * ** * ** * * * *
3872376 AGCAGGATTGGTAATATGCAGATAGGGACCCGGTTGATCCCTGGCTTGTGCATCCCGCCCCTCTG
770 AGTAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
** *
3872441 GATGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
835 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
3872506 TAA
900 TAA
* * * *** * *
3872509 GCATATGGAGCTCATGCCCAGTCTAAGATCGAATTGGATCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * **
3872574 CTCGGGCAAGTATTGGTTCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * * * * *
3872639 ACCTAACCGACGTCACTGGGGTTCCGACGATCGGGGGGTCGGGTGGTGTGGGCACATGATGTGCG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGCG
3872704 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * **
3872769 GCCCTTAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTCCAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
3872834 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAA-TTTTCTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
* *
3872898 CATGCCAACCAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
* * * ** *
3872963 TTTCAAAAATCTCGGATCGCAAAAAGTTTTTAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
456 TTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
3873028 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* ** * *
3873093 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTTTCACCCTATCGATCGAAGGCTTGCGCA
586 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* *
3873158 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCAC-GCCCGCCCGCCCGCTCGTTTCGTCGATCGGCT
651 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-CTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* *
3873222 TGGGCATACGGAGTTCCTTCCCAGTCTAAGATT
715 TAGGCATACGGAGTTCATTCCCAGTCTAAGATT
3873255 AGAGCATTTG
Statistics
Matches: 10889, Mismatches: 1274, Indels: 488
0.86 0.10 0.04
Matches are distributed among these distances:
865 2 0.00
866 133 0.01
867 286 0.03
868 2 0.00
870 28 0.00
871 58 0.01
872 1 0.00
877 5 0.00
878 269 0.02
879 3 0.00
882 3 0.00
883 236 0.02
884 95 0.01
885 203 0.02
886 5 0.00
887 1 0.00
888 455 0.04
889 401 0.04
890 444 0.04
891 92 0.01
892 695 0.06
893 428 0.04
894 87 0.01
895 543 0.05
896 120 0.01
897 516 0.05
898 12 0.00
899 29 0.00
900 353 0.03
901 353 0.03
902 1354 0.12
903 594 0.05
904 138 0.01
905 527 0.05
906 546 0.05
907 307 0.03
908 315 0.03
909 634 0.06
910 230 0.02
911 36 0.00
912 33 0.00
913 32 0.00
914 6 0.00
915 5 0.00
916 211 0.02
918 1 0.00
920 10 0.00
921 31 0.00
922 1 0.00
924 20 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
TTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCAAGGGTTGCGGCAGTAGGATCGG
CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:3864464 original size:26 final size:26
Alignment explanation
Indices: 3864428--3864480 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3864418 CTTGACTTAG
3864428 GCATATGGAGTTCATTACCAGTCTAA
1 GCATATGGAGTTCATTACCAGTCTAA
*
3864454 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTACCAGTCTAA
3864480 G
1 G
3864481 ATTGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTACCAGTCTAA
Found at i:3866243 original size:26 final size:26
Alignment explanation
Indices: 3866214--3866266 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3866204 GTTGACTCAG
*
3866214 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAACTTCATTCCCAGTCTAA
*
3866240 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGAACTTCATTCCCAGTCTAA
3866266 G
1 G
3866267 ATCGGCCCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAACTTCATTCCCAGTCTAA
Found at i:3868063 original size:26 final size:26
Alignment explanation
Indices: 3868027--3868079 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3868017 GTTGACTTAG
*
3868027 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3868053 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3868079 G
1 G
3868080 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3869824 original size:26 final size:26
Alignment explanation
Indices: 3869787--3869839 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3869777 GTTGACTTAG
3869787 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* * *
3869813 GCATACGGAGTTGATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3869839 G
1 G
3869840 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:3871603 original size:26 final size:26
Alignment explanation
Indices: 3871574--3871625 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
3871564 GTTGACTTAG
* * *
3871574 GCATACGGAGTTTATTCGCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3871600 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3871626 TATCAGATCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3872523 original size:26 final size:26
Alignment explanation
Indices: 3872483--3872535 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3872473 GTTGACTTAG
* *
3872483 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATGCCCAGTCTAA
*
3872509 GCATATGGAGCTCATGCCCAGTCTAA
1 GCATACGGAGCTCATGCCCAGTCTAA
3872535 G
1 G
3872536 ATCGAATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATGCCCAGTCTAA
Found at i:3873887 original size:26 final size:26
Alignment explanation
Indices: 3873851--3873903 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3873841 GTTGACTTAG
3873851 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
3873877 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3873903 G
1 G
3873904 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3874783 original size:26 final size:26
Alignment explanation
Indices: 3874754--3874806 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3874744 GTTGACTTAG
*
3874754 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
3874780 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
3874806 G
1 G
3874807 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:3875163 original size:902 final size:899
Alignment explanation
Indices: 3873255--3875532 Score: 3300
Period size: 902 Copynumber: 2.5 Consensus size: 899
3873245 GTCTAAGATT
* * *
3873255 AGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTCCAATGGGGACACTT
1 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATGGGGACACTT
* *
3873320 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATTTTCTGTGCATGCCAAC
65 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTCTGTGCATGCCAAC
* * * *
3873385 CAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTTGAAAAAAATTTTAAAAAA
130 CAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCG-AAAAAATTTTAAAAAT
* * ** **
3873450 TCCCGAACTGTAAAAGGTTCCAAAAATTGTG-AAAATAGAAAACGAGTCGTCTTGCCATGAAACT
194 TCCGGAAC-GTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
3873514 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAGTGGCACACAG
258 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAG
* * * *
3873579 AAATATGAAGATGTGACTGAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCTCGTCTC
323 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTACGCATCCCGTCTC
*
3873644 TCTGGCCGGCGTAGT-------GCTCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGG-ATACGG
388 TCTGGCCGGCGTAGTGCCCGCCGCTCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGG
* * *
3873701 AGTTCATTCCCAGTCTAAGATCGGA-CCAGACTGAGGGTTGTGACAGTAGGATCGACAGCACGTA
453 AGTTCATTCCCAGTCTAAGATCAGATCGAGACCGAGGGTTGTGACAGTAGGATCGACAGCACGTA
* * * *
3873765 GAGGGGGACCCGATCAATCCCCGGTTGCTCATCCCGCCCCTCTGGCCAGCTGAGCGCACGCACGC
518 GAGGGGGACCCGATCAATCCCCGGTTGCGCATCCCGCACCTCTGGCCAGATGAGCACACGCACGC
*
3873830 TCATTTCTTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
583 TCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * ** * *
3873895 CAGTCTAAGATCAGATCGGACCGAGGGTTGCAGCAGCACATCCTGGGCTCGAGAATGTGCTAGTG
648 CAATCTAAGATCAGACCAAACCGAGGGTTACAGCAGCACATCCTGGGCTCGAGAATGTGCTAGAG
* *
3873960 CCACATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTG
713 CCACATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTG
*
3874025 GGATTCTAGTGATCGAGGGGCCGGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
778 GGATTCGAGTGATCGAGGGGCCGGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
3874090 GGCCCCTATATTGGCCCCCTATCCCTCATTAAATCTCGAGAACTCACACCCCCTTAA
843 GGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTGAA
**
3874147 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAACAGCCATTAAAGTGTCTAACATGGGGACACTT
1 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA-ATGGGGACACTT
*
3874212 TTTTGAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTCTGTGCATGCCAAC
65 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTCTGTGCATGCCAAC
3874277 CAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTCAAAAA
130 CAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTT-AAAAA
* * * * *
3874342 TTTCGGATCGCAAAAAGTTTTTAAAATCATGAAAAATAGAAAACGAGTCGTCTTACCATGAAACT
193 TTCCGGAACGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
3874407 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAG
258 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAG
* *
3874472 AAATATGAAGATGTGCCTAAACCCACCTTCCACCCTATCGATCAAAC-GCTTGCGCATCCCGTCT
323 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC-AACGGCTTACGCATCCCGTCT
* * *
3874536 CTCTGGCCGGCGTAGTGCCCGCACGCCCGCCCGCCCGCTCGTTTCGTCGATCGGCTTGGGCATAC
387 CTCTGGCCGGCGTAGTGCCCGC-CGCTCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATAC
* * ***
3874601 GGAGTTCCTTCCCAGTCTAAGATTAGATCGA-ACCGAGGGTTGTGGTTGTAGGATCGACAGCACG
451 GGAGTTCATTCCCAGTCTAAGATCAGATCGAGACCGAGGGTTGTGACAGTAGGATCGACAGCACG
* * * *
3874665 TAGAGGGGGACCC-AGTCGATCCCCGGCTTGCGCATCCCGCACCTCTTGCCGGATGAGCACCCGC
516 TAGAGGGGGACCCGA-TCAATCCCCGG-TTGCGCATCCCGCACCTCTGGCCAGATGAGCACACGC
3874729 ACGCT-AGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
579 ACGCTCA-TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * *
3874793 ATTCCCAATCTAAGATCGGACCAAACCGAGGGTTAC-GACAGCACATGCTGGGCTTG-GCCATGT
643 ATTCCCAATCTAAGATCAGACCAAACCGAGGGTTACAG-CAGCACATCCTGGGCTCGAG-AATGT
* *** * *
3874856 GCTGGAGCCACATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGAT
706 GCTAGAGCCACATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGAC
* * * *
3874921 GGCATTAGGG-TTCCGA-TGATCGGGGGGGCCGGTGGG-GTGTGCGTACATGATGTGCGGTGGGT
771 GGCATT-GGGATT-CGAGTGATC-GAGGGGCCGGGGGGTGTGTGCGCACATGATGTGCGATGGGT
* * *
3874983 GCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCGAACCTCGAGAACTCACACCCTCTG
833 GCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTG
3875047 AA
898 AA
3875049 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
1 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATGGGGACACTT
* * *
3875114 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTTTTGTGCATGCCAAA
65 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTCTGTGCATGCCAAC
* * *
3875179 AAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAA
130 CAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAT
* * * *
3875244 TCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAAGT
194 TCCGGAA-CGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* **
3875309 TCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
258 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAG
* * * *
3875374 ACATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCGACGGCTTACACATCCCGTCTC
323 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTACGCATCCCGTCTC
* * * * * *
3875439 TCTGGCCGGCGTAGTGCCCGCCCGTTCGCCTGCGCGCTCGTTTCGTGGGTTGACTTAGGCATACG
388 TCTGGCCGGCGTAGTGCCCG-CCGCTCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACG
*
3875504 GAGTTCATTCCCAGTCTAATATCAGATCG
452 GAGTTCATTCCCAGTCTAAGATCAGATCG
3875533 GATCGAGCTT
Statistics
Matches: 1240, Mismatches: 118, Indels: 46
0.88 0.08 0.03
Matches are distributed among these distances:
891 1 0.00
892 189 0.15
893 178 0.14
894 2 0.00
901 44 0.04
902 545 0.44
903 264 0.21
904 17 0.01
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (899 bp):
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTCTGTGCATGCCAACC
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAATTC
CGGAACGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTACGCATCCCGTCTCTCT
GGCCGGCGTAGTGCCCGCCGCTCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCAGATCGAGACCGAGGGTTGTGACAGTAGGATCGACAGCACGTAGAG
GGGGACCCGATCAATCCCCGGTTGCGCATCCCGCACCTCTGGCCAGATGAGCACACGCACGCTCA
TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAA
TCTAAGATCAGACCAAACCGAGGGTTACAGCAGCACATCCTGGGCTCGAGAATGTGCTAGAGCCA
CATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGA
TTCGAGTGATCGAGGGGCCGGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
CCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTGAA
Found at i:3876160 original size:722 final size:709
Alignment explanation
Indices: 3874780--3876253 Score: 2072
Period size: 722 Copynumber: 2.1 Consensus size: 709
3874770 CCCAGTCTAA
* * * * ** ** * * *
3874780 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAAACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGCTTTACGGTAACACATTCTTGG
* * * * ** * ** *
3874845 CTTGGCCATGTGCTGGAGCCACATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGA
** * **
3874910 ACCTGACCGATGGCATTAGGGTTCCGATGATCGGGGGGGCCGGTGGGGTGTGCGTACATGATGTG
131 ACCTGACCGACAGCATTAGGGTTCCGATGATCGGAGGGGCCGGTGGGGTGTGCACACATGATGTG
* *
3874975 CGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCGAACCTCGAGAACTCACA
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
3875040 CCCTCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* ** *
3875105 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTTTTGTG
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACGTCAAGTTTTTAGCTGAATTTTTTGTG
*
3875170 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTTCGAAAAAAT
391 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAATTTAGGGCCAAAACTCCTTTCGAAAAAAT
* * ** * *
3875235 TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTTGTCTTGC
456 TTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGC
* *
3875300 CATGAAAGTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
3875365 GGCACGTAGACATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCGACGGCTTACACA
586 GGCACGCAGAAATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACACA
* *
3875430 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTTCGCCTGCGCGCTCGTTTCGTGGGTTGACTT
651 TCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC---CG--T-C-CGCTCATTTCGTCGGTTGACTT
3875495 AG
708 AG
* * *
3875497 GCATACGGAGTTCATTCCCAGTCTAATATCAGATCGGATCGAGCTTTACGGTAACACATTCTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGCTTTACGGTAACACATTCTTGG
* *
3875562 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATTACCGGAGCATCACCGGATA
66 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGA
* * * *
3875627 ACCTGATCGGCAGCATTAGGGTTCCGATGATTGGAGGGGCCGG-GGGGTGTGCACATATGATGTG
131 ACCTGACCGACAGCATTAGGGTTCCGATGATCGGAGGGGCCGGTGGGGTGTGCACACATGATGTG
3875691 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
3875756 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CATTTGAAAAAAGTGTCT
260 ACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TT----AAAGTGTCT
*
3875820 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACGTCAAGTTTTTAGCTGAATTT
320 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACGTCAAGTTTTTAGCTGAA-TT
* * * * * *
3875885 TTTTGTTCATGCCAATAAAAATACAGGGATCACGTCTACCAAATTTGGGGGCAAAACTCC-TTCT
384 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAATTTAGGGCCAAAACTCCTTTCG
* * * * *
3875949 AAAAAACTTTTTAAAAATCTCAAACTGCAAAAAGTTTCAAAAATCTTGAAAAATAGGAAACAAGT
449 AAAAAA-TTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGT
*
3876014 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAA
513 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
3876079 ATGGTATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
578 ATGGCATTGGCACGCAGAAATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * *
3876144 CTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCTGCCCGTCCGCTCATTTTGTCGGTTGGCTT
643 CTTACACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCTCATTTCGTCGGTTGACTT
3876209 AG
708 AG
3876211 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAG
3876254 GATTGTGGCA
Statistics
Matches: 667, Mismatches: 82, Indels: 19
0.87 0.11 0.02
Matches are distributed among these distances:
714 60 0.09
715 1 0.00
716 52 0.08
717 218 0.33
718 2 0.00
721 77 0.12
722 257 0.39
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (709 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGCTTTACGGTAACACATTCTTGG
CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGA
ACCTGACCGACAGCATTAGGGTTCCGATGATCGGAGGGGCCGGTGGGGTGTGCACACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACGTCAAGTTTTTAGCTGAATTTTTTGTG
CATGCCAAAAAAAATACAAGGATCACGTCTACCAAATTTAGGGCCAAAACTCCTTTCGAAAAAAT
TTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACACA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCTCATTTCGTCGGTTGACTTAG
Found at i:3876475 original size:159 final size:159
Alignment explanation
Indices: 3876200--3876555 Score: 595
Period size: 159 Copynumber: 2.2 Consensus size: 159
3876190 TCATTTTGTC
*
3876200 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGATTGTGGCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGATTGTGGCAG
* * * *
3876265 CAGGATCGGCAGGACACAGAGGGTGACCTGGTCGATCCCCAGCTTGTGCATCTCGCCCCTCTGGC
66 CAGGATCGACAGGACACAGAGGGTGACCTGGTCGATCCCCAGCTTGCGCATCCCACCCCTCTGGC
3876330 CGGCTAAGCACCCGTACGCTCGTTTCATG
131 CGGCTAAGCACCCGTACGCTCGTTTCATG
* *
3876359 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATTGAGGGTTGTGGCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGATTGTGGCAG
* * *
3876424 TAGGATCGATAGGACACAGAGGGTGACCTGGTCGATCCCCAGCTTGCGCATCCCACCCCTCTGGT
66 CAGGATCGACAGGACACAGAGGGTGACCTGGTCGATCCCCAGCTTGCGCATCCCACCCCTCTGGC
*
3876489 TGGCTAAGCACCCGTACGCTCGTTTCATG
131 CGGCTAAGCACCCGTACGCTCGTTTCATG
* *
3876518 GGTTGACTTAGGCATACGGAGTTCATTTCTAGTCTAAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
3876556 CAATACAAGA
Statistics
Matches: 184, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
159 184 1.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGATTGTGGCAG
CAGGATCGACAGGACACAGAGGGTGACCTGGTCGATCCCCAGCTTGCGCATCCCACCCCTCTGGC
CGGCTAAGCACCCGTACGCTCGTTTCATG
Found at i:3883609 original size:26 final size:26
Alignment explanation
Indices: 3883570--3883625 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
3883560 TGGGTTGACT
* *
3883570 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAATC
3883596 TAAGCATACAGAGTTCATTCCCAATC
1 TAAGCATACAGAGTTCATTCCCAATC
3883622 TAAG
1 TAAG
3883626 ATCGGACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAATC
Found at i:3884915 original size:26 final size:26
Alignment explanation
Indices: 3884885--3884937 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3884875 GTTGACTTAG
3884885 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3884911 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3884937 G
1 G
3884938 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3885483 original size:26 final size:26
Alignment explanation
Indices: 3885453--3885505 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3885443 GTTGACTTAG
3885453 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
*
3885479 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
3885505 G
1 G
3885506 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:3886393 original size:567 final size:564
Alignment explanation
Indices: 3884771--3886459 Score: 2704
Period size: 551 Copynumber: 3.0 Consensus size: 564
3884761 CGACCGAGGG
* * ** * *
3884771 TTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCAGTCGATCCTCGGCTTGCGCATCCCGC
1 TTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCAACCGATCCCCGACTTGCGCATCCCGC
* * *
3884836 CCCTCTAGCTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
66 CCCTCTGGCCGGCTGAGCGCCCGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
* * * * * * *
3884901 CCCAGTCTAAGCATACGGAGTTCATTGCCAGTCTAAGATCAGATCGGATCGAGGGTTTCAACAGC
131 ACCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGG-ATC-ACAGC
* ** ** * **
3884966 AAATACTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCACCGGAGCA
194 ACATA-TGGG-TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGAGCACCATCGTCGGAGCA
* * * * *
3885031 TCGTCGGAGAACCTTACCGACGGCATTGGGGTTCCGACGATCGGGAGGGCC-AGGGGGTGTGCGC
257 TCGTCGGAGAACCTGATCGACGGCATTGGGGTTCCGTCGATCGGGGGGGCCGGGGGGGTGTGCGC
* * * * * * * *
3885095 ACATGATGTGTGATGGATGCTAGTACTTGGCCCATATATTGGCCCCTTATCCCTCATCAAACCTC
322 ATATGATGTGCGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT
* *
3885160 AAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
387 GAGAACTCA-ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
3885225 TGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTG
451 TGTCTGAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTG
3885290 AATTTTTTTGTGCATGCCAATAAAAATACAAGTATGACGTCTACCAAGT
516 AATTTTTTTGTGCATGCCAATAAAAATACAAGTATGACGTCTACCAAGT
* *
3885339 TTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACTCGACCGATCCCCGACTTGCGCATCCCGC
1 TTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCAACCGATCCCCGACTTGCGCATCCCGC
*
3885404 CCCTCTGGCCGGCTGAGCGCCTGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
66 CCCTCTGGCCGGCTGAGCGCCCGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
3885469 ACCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGAT-AC-G-AC
131 ACCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGATCACAGCAC
* *
3885531 --A---G-C--ACA--TGCTGGTGCCGCATTTTTCTTCACCGGAGCACCATCGTCGGAGCATCGC
196 ATATGGGTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGAGCACCATCGTCGGAGCATCGT
* *
3885586 CGGAGAACCTGATCGACGGCATTGGGGTTCCGTCGATCGGGGGGGCCGGGGGGTTGTGCGTATAT
261 CGGAGAACCTGATCGACGGCATTGGGGTTCCGTCGATCGGGGGGGCCGGGGGGGTGTGCGCATAT
3885651 GATGTGCGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
326 GATGTGCGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
3885716 ACTCAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
391 ACTCAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
3885781 GAAATTGGGACAGTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTGAATTT
456 GAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTGAATTT
*
3885846 TTTTGTGCATGCCAATAAAAATACAAGTATCACGTCTACCAAGT
521 TTTTGTGCATGCCAATAAAAATACAAGTATGACGTCTACCAAGT
3885890 TTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCAACCGATCCCCGACTTGCGCATCCCGC
1 TTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCAACCGATCCCCGACTTGCGCATCCCGC
* * *
3885955 CCCTCTGGCCGGCTGAGCACCCGCACGTTCGTTTGATGGGTTGACTTAGGCAGACGGAGTTCATT
66 CCCTCTGGCCGGCTGAGCGCCCGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
3886020 ACCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGATGCGACAGC
131 ACCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGAT-C-ACAGC
3886085 ACATATTGGGTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGAGCACCATCGTCGGAGCAT
194 ACATA-TGGGTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGAGCACCATCGTCGGAGCAT
3886150 CGTCGGAGAACCTGATCGACGGCATTGGGGTTCCGTCGATCGGGGGGGCCGGGGGGGTGTGCGCA
258 CGTCGGAGAACCTGATCGACGGCATTGGGGTTCCGTCGATCGGGGGGGCCGGGGGGGTGTGCGCA
3886215 TATGATGTGCGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
323 TATGATGTGCGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
3886280 AGAACTCAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
388 AGAACTCAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
3886345 TCTGAAATGGGGACAGTTTTTTCAAATGGTTACAAAATCTTATACACTTCGAGCTTTTAGCTGAA
453 TCTGAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTGAA
*
3886410 TATTTTTGTGCATGCCAATAAAAATACAAGTATGACGTCTACCAAGT
518 TTTTTTTGTGCATGCCAATAAAAATACAAGTATGACGTCTACCAAGT
3886457 TTG
1 TTG
3886460 GGGCCAAAAC
Statistics
Matches: 1038, Mismatches: 66, Indels: 35
0.91 0.06 0.03
Matches are distributed among these distances:
551 429 0.41
552 75 0.07
553 2 0.00
554 2 0.00
555 2 0.00
556 2 0.00
557 1 0.00
558 1 0.00
561 1 0.00
562 1 0.00
563 2 0.00
564 1 0.00
565 4 0.00
567 348 0.34
568 167 0.16
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.26
Consensus pattern (564 bp):
TTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCAACCGATCCCCGACTTGCGCATCCCGC
CCCTCTGGCCGGCTGAGCGCCCGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
ACCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGATCACAGCAC
ATATGGGTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGAGCACCATCGTCGGAGCATCGT
CGGAGAACCTGATCGACGGCATTGGGGTTCCGTCGATCGGGGGGGCCGGGGGGGTGTGCGCATAT
GATGTGCGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
ACTCAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTGAATTT
TTTTGTGCATGCCAATAAAAATACAAGTATGACGTCTACCAAGT
Found at i:3886937 original size:26 final size:26
Alignment explanation
Indices: 3886899--3886949 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
3886889 TTGACTTAGG
*
3886899 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAATTCATTCCCAGTCTAAC
*
3886925 CATACGGAATTCATTCCTAGTCTAA
1 CATACGGAATTCATTCCCAGTCTAA
3886950 GATCGGATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACGGAATTCATTCCCAGTCTAAC
Found at i:3888123 original size:26 final size:26
Alignment explanation
Indices: 3888087--3888139 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3888077 GTTGACTTAG
3888087 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3888113 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3888139 G
1 G
3888140 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3889462 original size:26 final size:26
Alignment explanation
Indices: 3889426--3889478 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3889416 GTTGACTTAG
3889426 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3889452 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3889478 G
1 G
3889479 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3895275 original size:23 final size:23
Alignment explanation
Indices: 3895249--3895305 Score: 105
Period size: 23 Copynumber: 2.5 Consensus size: 23
3895239 GACGTGATCT
3895249 TTTGAAAAAAGATTTTGTGACCA
1 TTTGAAAAAAGATTTTGTGACCA
3895272 TTTGAAAAAAGATTTTGTGACCA
1 TTTGAAAAAAGATTTTGTGACCA
*
3895295 ATTGAAAAAAG
1 TTTGAAAAAAG
3895306 TGTCCCTATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.44, C:0.07, G:0.18, T:0.32
Consensus pattern (23 bp):
TTTGAAAAAAGATTTTGTGACCA
Found at i:3896826 original size:26 final size:26
Alignment explanation
Indices: 3896774--3896826 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3896764 ATTTTCGAAT
* *
3896774 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAAAGAACTCCGCATG
*
3896800 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGCATG
3896826 C
1 C
3896827 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGCATG
Found at i:3897712 original size:26 final size:26
Alignment explanation
Indices: 3897676--3897728 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3897666 TTGGTCCGAT
3897676 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTATGTATG
*
3897702 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTATGTATG
3897728 C
1 C
3897729 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTATGTATG
Found at i:3898587 original size:26 final size:26
Alignment explanation
Indices: 3898551--3898603 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3898541 CCGGTCCGAT
3898551 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
*
3898577 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
3898603 C
1 C
3898604 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:3900367 original size:26 final size:26
Alignment explanation
Indices: 3900338--3900390 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3900328 CTAGTCCAAT
*
3900338 CTTATAATGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
* *
3900364 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
3900390 C
1 C
3900391 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:3902050 original size:869 final size:870
Alignment explanation
Indices: 3896800--3902998 Score: 7125
Period size: 876 Copynumber: 7.0 Consensus size: 870
3896790 ACTCTGCATG
* * * *
3896800 CTTAGACTGGGAAAGAACTCCGTATGCCTAAGTTAACCCATG-AACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
3896864 CAGCCAGAGGGGTGGGATGCGAAAGCCGGGGATCGGTCGAGTCCCCCTCTGCGTGCTGCCAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
3896929 TGCTGCCGCAACCCTCGGTTTGGTCTGATCTTAGATTGGGATTGAACTCTGTATGCATAAGCCAA
131 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
3896994 CCAACGAAACGAGCAGACGAGCGGGCGGGCACTGCGCCGACCAGAGAGACAGGATGCGCAAGCCG
196 CCGACGAAACGAGC-GGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
3897059 TGGATCGATAGGGTAGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
3897124 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTATCATGGCAAGAATGA-
325 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG-ACGAC
* * * * *
3897188 TGCGTTTCCGATTTTTCATAAATTTTTGAAACCTTTTTGCAAGTTCGGGA--TTTTAAATTTTTT
389 T-CGTTTTCTATTTTTCAT-GATTTTTGAAA-CTTTTTGC-GGTTCGGGATTTTTTAAAATTTTT
** * * * *
3897251 TCGGAGGGAGTTTCGGGCCCAAAACTT-GTAGACATGATCCTTGGTACTTTTT-TTAGCATGCAC
450 T-GGAAAGAGTTT-TGGCCCCAAACTTGGTAGACGTGATCCTT-GTA-TTTTTGTTGGCATGCAC
** * *
3897314 AAAAAAATATCAGCTTTAAAAACTTAAAGTGTACAAGA-TTTGTGATCATTTGAAAACAGTGTTC
511 -AAAAAAT-TCAGC--TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG-TC
* *
3897378 CCCATTTCCCA-ACCCCACTTTAATGGCCCACTGGCAGCCAACCTGTTAAATATCTCAAATGCTC
571 CCCATTT--CAGA---CACTTTAATGG-CTACTGGCAGCAAACCTG-TAAA-ATCTCAAATGCTC
** * *
3897442 TTTAAACCAGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTA
628 TTT-AA-GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * *
3897507 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCTCCCGATCGTCGGAACCCCAATGC
691 CCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGC
*** * ** *
3897572 CATCGGTCAGG-T-T-------T--TCCGGCGATGGTGCCCCAACGAAGAAAAATATGGCACCAG
756 TGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAG
3897626 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTTGGTCCGATCTTAGACTGGGAATG
821 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC------G---G----T---CT-GG--T-
3897691 AACTATGTAT
866 --C--TG-AT
** *
3897701 GCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
3897766 TCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGGCCAGGTCCCCCTCTACGTGCTGTCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * ** * *
3897830 CTACTGCTGCAACCCTGGGTCCGGTCCAATCTTAGATTGGGAATGAACTCC--A----T-A---T
130 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * *
3897885 ACCGACGAAACGAGCGAGCGGGCGGGCGAGCACTACGTCGGGCTGAAAGACGAGG-TGCACAAGT
195 ACCGACGAAACGAGCG-GCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACG-GGATGCGCAAGC
* ***
3897949 CGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
3898014 TTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGA
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
3898079 CTCG-TTTCTATTTTTCACGATTTTTGAAACTTTTTACTGTTTGGGATTTTTTAAAATTTTTTCG
388 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT-G
* * ** * * * * *
3898143 GAAGGTGTTTTCTCCCCAAACTTGGTATACATGATCATTGTATTTTTTTTGGCACGCACAAAAAA
452 GAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * * *
3898208 TTTCAGCTAAAAATTCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCTCATTTTAG
517 -TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
3898273 ACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
581 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
3898338 CTCGATGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCA
646 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
** *
3898403 T-TGCGCACAAACCCCAGCCCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGG-T-T----C
711 TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGGC
* * *
3898461 --T--T-CGACGATGGTGCCCCGGCAAAGAAAAATGTGGCACCAACACATGCCCAAGCCCAGCAT
776 GATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
** *
3898521 GTGCTGCTTCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCCTAT
841 GTGCTGCCGCAA-CC-C--T-C-G---G----T---CT-GG--T---CT---GAT
* *
3898576 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * ** * * *
3898641 CCAGCTAGAGGGGTGGGATGCACAAGCCGAGGATCGACCGGTTCCCCCTCTGCATGCTACCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* ** ** * **
3898706 CTCCTGTCGCAACCCTCGGTCCAGTCTTATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
3898771 ACTGACGAAATGAGCGGACGGGCGGGTGGGCGGGCACTACGCCGACCAGATAGACAGGATGCGCA
195 ACCGACGAAACGAGCGG-CGGGC----GAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
3898836 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTGCTGCATTCCAATGCC
255 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
3898901 ATTTTTATGGCTTGGAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
320 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** *
3898966 CGACTCGTTTTTCTATTTTTCACGATTTTCCAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTT
385 CGACTCG-TTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * * * * ** *
3899031 TTCGAAAGGAGTTTTGACCCAAAAATTGGTAGACGTGATCCCTGTATCGTTGTTGGCATGCAAAA
449 TTGGAAA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACA
* ** *
3899096 AAAAATTCAGCTAAAAAGTC-AGAGTGTACAAAGATTTTACGACCATTTGAATAAAGTGTCCCCA
512 AAAAATTCAGCTAAAAACTCGA-AGTGTAC-AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
3899160 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTG
575 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* ** * * * * *
3899224 TGAGTTCTTGAGGAATGACGAGAGATAGGGGGCCAATATAAGGGCCAAATACAAGCCCCCATCAC
640 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAC
* * * *
3899289 ACATCATGTGCGCACACCCCCCCGACCCCCCC-ATCGTCGGAACCCGAATGCCGCCGATCAGGTT
705 ACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTT
* * * * * *
3899353 CTTC-TCGATGCTCC-AGCGATGGTGCCCTGGCGAAGAAAAATGTGACACCAACACAT-ACCGAG
769 CTCCGGCGATGCTCCGA-CGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAG
* * *
3899415 CCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCTGAT
833 CCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* *
3899453 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTAAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
3899518 CGACCAGAGGGGCGGGATGCGTAAGTCAGGGATCGGTCAGGTCCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
3899583 TACTACCACAACCCTCAGT-TCGGTCTGATCTTAGAGTGGGAATAAACTCTGTATGCCTAAGCCA
131 TGCTACCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
3899647 ACCAACGAAACGAGCGGGCGAGCGGGCAGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGG
195 ACCGACGAAACGA----GCG-GC--G--GGC----GAGCGGGCACTACGCCGGCCAGAGAGACGG
* *
3899712 GATGCGCAAGCCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTG
247 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
*
3899777 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCA
312 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* ** * *
3899842 TGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTCTGA
377 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTA
* * * *
3899907 AAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTCTTTTTGTTGGCA
442 AAATTTTTT-GGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
*
3899972 TGCACAAATAAATTCAGCTAAAAACTCGAAGGGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
506 TGCACAAA-AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* *
3900037 CCTCAATTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
570 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * *
3900102 GGGTGTGAGTTCTTGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCA
635 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* *
3900167 ATCACACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGTCGAAACCCCAATGCTGCCGGTCA
700 ATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCA
* *
3900232 GGTTCTACGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCT
765 GGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCC
* *
3900297 GAGCCCAGCATGTGCTGCCACAACCCTCGGTCTAGTCCAATCTTATAATGGGAATGAACTCCATA
830 GAGCCCAGCATGTGCTGCCGCAACCCTC-G----G-----TC------T-GG--T---CT---GA
3900362 T
870 T
* *
3900363 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGAGCGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * **
3900428 -CGGCCAGAGGGGCGGAATGCACAAGCCGGGGATCAATCGGGTCCCCCTCTGTGTGCTATCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
** *
3900492 CTGCTACCGCAACCCTCAATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
3900557 ACCGACGAAACGAGCGGGCGGGC-AGGCGGGCACTATGTCGGCCAGAGAGATGGGATGCACAAGT
195 ACCGACGAAACGAGC-GGCGGGCGA-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * * *
3900621 CGTAGATCGATAAGGTGGTAGGTTGGTTTAGGGATATCTTCATATTTCTGCACT-CCAATGCCAT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-TGCCAATGCCAT
* * *
3900685 TTTTATGGCTTCTAAGTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATG
322 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
3900750 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTGTAAAATTATTTC
387 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTG
* *
3900815 GAAAGGAGTTTT--CCCCAAACTTGGTGGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAAA
452 GAAA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
3900878 ATTTAGCT-AAAAGTCGAAGTGTACAAG-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
516 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
3900941 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAATTCTCAAATGCTTTTTAAGGGGGTGTGAGTT
581 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
3901006 CTCGAGGATT-ATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
646 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
* * * * * * * *
3901070 TGTGCGCACACCCCTCCGGCCCCCTCGATCGCCAGAACCCCAATGCCGTCGGACAGGTTCTCTGA
711 TGTGCGCACACCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGG
* * * ** *
3901135 CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAAGTCACACCAGCACATGCCTGAGCCCAGCA
775 CGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
* *
3901200 TGTACTGCCGGAACCCTCGGTCTGGTCTGAT
840 TGTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* *** * * * *
3901231 CTTAGACTTGGAATGAACTTTATATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCACTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
3901296 AGGCCAAAGGGGTGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCTTCTGCCTGCTGCCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
3901361 TGCTATCGCAACCCTTGGTCTGGCTCT-ATCTTAGATTGGGAATAAACTCCGTATGCCTAAGCCA
131 TGCTACCGCAACCCTCGGTCTGG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
3901425 ACCGATGAAACGAGC-GCGGGC-AGCGGGCACTACG-CGGCCAGAGAGATGGGATTCGTAAGCCG
195 ACCGACGAAACGAGCGGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * **
3901487 TGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATTTCTGTGTGCCAATGCCATTTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
*
3901552 TGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
325 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
3901617 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGTGATTTTTTTAAATTTTTTGGCA
390 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTGG-A
*
3901682 AAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAACAAT
454 AAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AAT
3901747 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
518 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
3901812 ACTTTAATGGCTACTTGG-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTAGTTC
583 ACTTTAATGGCTAC-TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
3901876 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAATTACCAGCACCAATCACACATCAT
647 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
* *
3901941 GTGCGCACACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCTGCCAGTCAGGTTCTCCGGCG
712 GTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGGCG
3902006 ATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
777 ATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
* *
3902071 TGCTGCCGCAACCCTCGGTCTAGTCCGAT
842 TGCTGCCGCAACCCTCGGTCTGGTCTGAT
* * * *
3902100 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
3902165 CGGCTAGAAGGGCGGGATGCGCAAGTCGGGGATC-GACTGGGTCCCCCTCTGTGTGCTGCTGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATC
* * ** *
3902229 CTGGTACCGTAACCCTCACTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
3902294 ACCGACGAAACAAGTGGACGGGCAGGAAGGCGAGCACTACGCCAGCCAGAGAGATGGGATGCGCA
195 ACCGACGAAACGAGCGG-CGGGC--G-A-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
3902359 AGCCGTAGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATATCTGCATGCCAATGCC
255 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
3902424 ATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
320 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
3902489 TGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCAGGATTTTGTAAAATTATT
385 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* * * *
3902554 TCGAAAGGAGTTTTGGCCCCAAACTTGGTGGACGTCATCCTTGTATTTTTTTTGGCATGCACAAA
450 TGGAAA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
3902619 AAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
514 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * * * *
3902684 AGGCACTTTAATGGCTACTTGCAGCAAACCTGTAAATTCTCAAATACTCTTAAAGGGGGTATGAG
579 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
3902749 TTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTA-CAGCACCTATCACACAT
644 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
** * * * * *
3902813 CATGTATGCACACCCCCCGGCCCCTCCAATCGTCGGAATCCCAATGCAG-CGGTCAGGTTTTCCT
709 CATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCC-
* *
3902877 GACGATGCTCCGATGATGGTGCCCCGGCGAAGAAAAATGTGGCA-CAGCACATGCCCGAGCCCCA
773 GGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAG-CCCA
** * * *
3902941 GCATGTGCTGCATACAACCCTCGATCTTGTCCGAT
837 GCATGTGCTGC-CGCAACCCTCGGTCTGGTCTGAT
* *
3902976 CTTTGAATGGGAATGAACTCCGT
1 CTTAGACTGGGAATGAACTCCGT
3902999 TTGCTTAGAC
Statistics
Matches: 4591, Mismatches: 574, Indels: 290
0.84 0.11 0.05
Matches are distributed among these distances:
863 1 0.00
864 203 0.04
865 14 0.00
866 54 0.01
867 65 0.01
868 143 0.03
869 397 0.09
870 68 0.01
871 7 0.00
873 1 0.00
874 28 0.01
875 340 0.07
876 539 0.12
877 261 0.06
878 17 0.00
879 5 0.00
880 23 0.01
881 11 0.00
882 106 0.02
883 232 0.05
884 222 0.05
885 56 0.01
886 41 0.01
887 23 0.01
888 30 0.01
889 49 0.01
890 165 0.04
891 10 0.00
892 408 0.09
893 350 0.08
894 29 0.01
895 13 0.00
896 47 0.01
897 4 0.00
898 215 0.05
899 1 0.00
900 3 0.00
901 2 0.00
902 135 0.03
903 81 0.02
904 2 0.00
906 4 0.00
907 3 0.00
910 122 0.03
911 61 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (870 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTGGAAA
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
GCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGGCGATGC
TCCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
GCCGCAACCCTCGGTCTGGTCTGAT
Found at i:3906140 original size:26 final size:26
Alignment explanation
Indices: 3906111--3906162 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
3906101 CTGGTCCGAT
*
3906111 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
3906137 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
3906163 TCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCTGTATG
Found at i:3907760 original size:902 final size:901
Alignment explanation
Indices: 3905301--3909414 Score: 5229
Period size: 895 Copynumber: 4.6 Consensus size: 901
3905291 CCGTATGGGT
* * * * * * *
3905301 GCTCAGCCGGCAAGAGGGGCAGGATGCACAAGCC-AGGGATCGATC-GGGTCCCCCTCTACGTGC
1 GCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGGTCTGGGTCCCCTTCTGCGTGC
** * * * ** *
3905364 TGCTGATCCTGCTG-CCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATG-ACTTCGTATG
65 TGCCAATCCTACTGATCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* * * *
3905427 CCTCAGCCAATCGACGAAATGA----GCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGAT
130 CCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
*
3905488 GCGCCAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATACTTT-TGCGTGCC
195 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTGCGTGCC
* ** *
3905552 AATGCCATTTTTATGGCTTGTAAATTCATACTATCATCCCTTAAGCCTTCACATGAAGTTTCATG
259 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
3905617 GCAAGACGACTCGTTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAA
324 GCAAGACGACTCG-TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAA
* * * * *
3905682 AATTTTTTCGAAAGGAGTTTTGGCACCAAACTTGGTATACGTGACCCTTGTATGTTTGTTGGCAT
388 AATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCAT
*
3905747 GCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
453 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
3905812 CCCATTTCAGACACTTTAATGGCTACT-GCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGG
518 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * *
3905876 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAAGTATCGGCACCCA
583 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * * *
3905941 TCGCACATCATGTGCGCACACCCCCCGGCCCTCCCGATCGTCGGAACCCTAATGTCGCCAGTAAG
648 TCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAG
* * ** * * * *
3906006 GTTCTCCGGTGATGCTTCGGTGATGGTGCTCCGATGAAGAAAAATACGACACTAACGCATGCCCG
713 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGACACCAACACATGCCCG
* * *
3906071 AGCCCAGCATGTGCTGCCACAACCATTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTAT
778 AGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * * *
3906136 GCTTAGACTGAGAATGAACTCTGTATGTCTAAGTCAACCAACAAAATGAGCGTGCGGGT
843 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGC
* * * * ** *
3906195 GCTCAGTCGGCCAGAGGGCCGGGATGCGCAAGCC-AGAGATC-GACTGGGTCCCCTTCTGTATGT
1 GCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGAG-GATCGGTCTGGGTCCCCTTCTGCGTGC
* * * * * * **
3906258 TGCCGATCCTCCTGCT-GCAACTCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTTGTATG
65 TGCCAATCCTACTGATCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* * * *
3906322 CCTAAGCCAACCAATGAAACGA----GTGGGCGGGCGGGCAGTACGCCGGCCAGAGAGACGGGAT
130 CCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* * *
3906383 GCACACA-TCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCC
195 GCGCA-AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
* *
3906447 AATGCCATTTTTATGGCTGGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATG
259 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * ** *
3906512 GCAAGACGACTCGTTCTCTATTTTTCATGATTTTTTAAACTTTTTGTGGTTCGGGATTTTTTAAA
324 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTT-AA
* * * *
3906577 AAATTTTTCGGAAGGAGTTCTGGGCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCAT
388 AATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCAT
* *
3906642 GCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTC
453 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
3906707 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GG
518 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
3906771 GGTGTGAGTTCTCGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGACAAGTACCAGCACCCA
583 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * ***
3906836 TCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACCGAAACCCTAATGCCGTTGGTCAG
648 TCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAG
* * *
3906901 GTTCTCAGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGACAGCAACACATGCCCG
713 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGACACCAACACATGCCCG
** * *
3906966 AGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCCAATCTTAGACTGGAAATGAACTCCGTAT
778 AGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
3907031 GCTTAGACTGGGAATGAACTC-GATATGCCTAAGTCAACCCACGGAACAAGCATGCAGGC
843 GCTTAGACTGGGAATGAACTCTG-TATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGC
* * * * * *
3907090 GCTCAGCCGACTAGAGGGGCAGAATGCGCAAGTCGAGGATCGGTC-GAGTCCTCC-TCTACGTGC
1 GCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCTGGGTCC-CCTTCTGCGTGC
** * * * * *
3907153 TATCAATCCT-GTGATCGCATCCCTCAGTTTAGTTCAATCTTAGACTGGGAATGAACTCCGTATG
65 TGCCAATCCTACTGATCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
3907217 CCTAAGCCGACCGACAAAATGAGCGGGCGGGCGGACGGGCGGGCCCCACGCCGGCCAGAGAGGCG
130 CCTAAGCCAACCGACGAAACGAGCGGGC--G-GG-CGGGCGGGCACTACGCCGGCCAGAGAGACG
* * * * *
3907282 GGATGCGCAAGCCGTGGATCGATTGTGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACAT
191 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGT
* *
3907347 GCCAATGCCATTTTTATGGGTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTC
256 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
** **
3907412 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAAATTTTACGGTTTGGGATTTTTT
321 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTT
* *
3907477 AAAATTTTTTTC-AAAGGAGTTTTGGCCCCAAACTTGGTAGATATGATCCTTGTATTTTTTTTGG
386 AAAA-TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGG
3907541 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
450 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * *
3907606 GTCCCCATTTCAAACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAA
515 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
3907671 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCAC
580 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * *
3907735 CCATCGTACATCATGTACGCACACCCCCCCAACCCCCCCGATCGCTGGAACCCCAATGCCGCCAA
645 CCATCGCACATCATGTGCGCACA-CCCCCCAGCCCCCCCGATCGCCGGAACCCCAATGCCGCCAG
* * * * * * * *
3907800 TTAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATGCGGCACCATCACAAG
709 TCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGACACCAACACATG
* * * * * *
3907865 CTCGAGCCTAGCATGTGCTGCCACAACCCTCGATCCGATCTGATCTT-GACTGGGAATGAA-TAC
774 CCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACT-C
* * * * *
3907928 CATATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCTACGAAACGAGCGTACGGGC
838 CGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGC
* * * * * * *
3907992 GTTCAG-CAAGCCAGAGGGGCGCGATACGCAAGCCGGGGATCGG-CTGGGACCCCCTCTGCGTGC
1 GCTCAGCCGA-CCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCTGGGTCCCCTTCTGCGTGC
** * * * * * * * *
3908055 TGTTAATCGTACTG-CCCCAACCATCGGTCTGGTTCGATCTTAGACTGGGAATGATCTCCGTATG
65 TGCCAATCCTACTGATCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* * * ** * * * *
3908119 CTTAAGCTAACTGGTGAAACGAGCGTGAGGGCGGGCGGGCACTACACCGGCTAGAGAGACGGGAT
130 CCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* *
3908184 GCGCAAGCTGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCA
195 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCA
* *
3908249 ATGCCATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGG
260 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* ** * ** *
3908314 CAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGATTCAGGATTTTTTTAAA
325 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAA
* ** * * * *
3908379 TTATTTC-AGAATTATTTTTGGCTCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATG
390 TTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATG
* *
3908443 CACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCC
454 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
3908508 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATTCTCTTTAAGGGG
519 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * *
3908573 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGTCCAATATAAGAGCCAAGTACCAGCACCCAT
584 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * *
3908638 CGCACATCAGGTGCGCACA-CCCCCAG-CCCCCCGATCCCCGGAACCCCAATGTCGCCGGTCAAG
649 CGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGG
* * * **
3908701 TTCTCCGGCGATGGTACC-A--A--G-G---C---GAAGAAAAATACGGCACCAGCACATGCTTG
714 TTCTCCGGCGATGCT-CCGACGATGGTGCCCCGGTGAAGAAAAATACGACACCAACACATGCCCG
* * * *
3908754 AGCCCAGCATGTGCTACCGCAACCCTC-GTATGGTTCGATC-TAGACTGGG-ATGAACTCCGTAT
778 AGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
*
3908816 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGC
843 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGC
* * * *
3908875 GCTCAACCGACTAGAGGGGCGGGATGCGTAAGCCGAGGATCGGTC-GGGTCCCCTTCTGTGTGCT
1 GCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCTGGGTCCCCTTCTGCGTGCT
* *
3908939 GCCTATCCTACT-A-CTGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
66 GCCAATCCTACTGATC-GCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
3909002 CCTAAACCAATCGACGAAAC-AGCGGGCAGGCGGGCGGGCACTATGCCGGCCAGAAAGATGGGAT
130 CCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
** * * *
3909066 AAGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTTTGTGTGCCA
195 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCA
* * * *
3909131 ATGCCATTTTTATGGCTTGTAAATTCTTACCATGGTCCCTTAAGCCTTTACGTGAAGTTTCGT-G
260 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * * *
3909195 CTAGGACAACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTTAA
325 C-AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAA
* *
3909260 ATTTTTTCGAAAGGAGTTTTGGCCCCCAACTTGGTAGACATCATCCTTGTATTTTTGTTGGCATG
389 ATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATG
* * * * * * *
3909325 CACAAAAAGATTCAGCAAAAAATTCAAAGTGTTCAAGATTTTGTGACCATTAGAAAAAGGTGTCC
454 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
3909390 CCATTTCAGACACTTTAATGGCTAC
519 CCATTTCAGACACTTTAATGGCTAC
3909415 CGGTCAGGTT
Statistics
Matches: 2785, Mismatches: 393, Indels: 96
0.85 0.12 0.03
Matches are distributed among these distances:
881 2 0.00
882 340 0.12
883 176 0.06
884 18 0.01
885 50 0.02
888 1 0.00
891 1 0.00
892 1 0.00
893 2 0.00
894 146 0.05
895 718 0.26
896 84 0.03
897 15 0.01
898 402 0.14
899 51 0.02
900 1 0.00
901 7 0.00
902 405 0.15
903 365 0.13
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.27
Consensus pattern (901 bp):
GCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCTGGGTCCCCTTCTGCGTGCT
GCCAATCCTACTGATCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
CTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAA
TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAAT
TTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
CACATCATGTGCGCACACCCCCCAGCCCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTT
CTCCGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGACACCAACACATGCCCGAGC
CCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGC
Found at i:3908828 original size:25 final size:26
Alignment explanation
Indices: 3908794--3908843 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3908784 TGGTTCGATC
3908794 TAGACTGGG-ATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
3908819 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
3908844 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:3910007 original size:26 final size:26
Alignment explanation
Indices: 3909970--3910020 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
3909960 CGATCCGATC
* *
3909970 TTAGACTAGGAATGAATTTCGTATGG
1 TTAGACTAGGAATGAACTCCGTATGG
*
3909996 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTAGGAATGAACTCCGTATG
3910021 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGG
Found at i:3910334 original size:445 final size:447
Alignment explanation
Indices: 3909468--3910369 Score: 1109
Period size: 445 Copynumber: 2.0 Consensus size: 447
3909458 GGCACGAGCA
* * *
3909468 CATGCCCGAGCCTAGCATGTGCTACCGCAACCCTCGGTCTAGTTCGATCTGAGACTGGGAATGAA
1 CATGCCCGAGCCTAGCATGTGCTACCGCAACCCTCGGTCGAGTCCGATCTGAGACTAGGAATGAA
* * **
3909533 CTCTGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGG
66 CTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACAAAACGAGCGTGCGG
* * * * * * *
3909598 GCCTCAGTCGGCCAGAAGGGCGGGATGCGTAAGCTGAGGATCGGCCTGGTCCTCCTCTGCGTGCT
131 GCCTCAGCCAGCCAGAAGGGCGGGATGCGCAAGCTGAGGATCAGCCGGGTCCCCCTCTACGTGCT
* * *
3909663 ATCAATCCTGGCTAACCGCAACCCTCAATCTGGTCCAATCTTAGACTGCGAATGAACTCTATATG
196 ACCAATCCTGGCTAACCGCAACCCTCAATCTGATCCAATCTTAGACTGCGAATGAACTCCATATG
* * *
3909728 CCTAAGCCAATCAACGAAACGTGCGGGCAAAGGGCGGAAGGGCACTACACCGGCCAGAGAGACGG
261 CCTAAGCCAATCAACGAAACGAGCGGGC--AGGGC---AGGGCACTACACCAGCCAGAGAGACAG
* ** * *
3909793 GATGTGCAAGCTGTGGATCCATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
321 GATGCGCAAGCCATAGATCCATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCT-CATG
* * * *
3909858 TCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTT
385 TCAATGCCATTTTTACGGCTTGTAAATTCATACAATGGTCCCATAAGCCTTCACGTAAAGTTT
* *** *
3909921 CATGCCTGAGCCTAGCATGTGCTGTTGCAACCCTCGGTCCGA-TCCGATCTTAGACTAGGAATGA
1 CATGCCCGAGCCTAGCATGTGCTACCGCAACCCTCGGT-CGAGTCCGATCTGAGACTAGGAATGA
* *
3909985 A-TTTCGTATGGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACAAAACGAGCGTGC
65 ACTCT-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACAAAACGAGCGTGC
* * *
3910049 GGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAG-TCGGGGATCAGTCGGGTCCCCCTCTACG
129 GGGC-CTCAGCCAGCCAGAAGGGCGGGATGCGCAAGCT-GAGGATCAGCCGGGTCCCCCTCTACG
* *** *** ** * * *
3910113 TGCTGCCAATCCT-GCT-GTTGCAACCCTTGGTCTGATCTGATCTTAGACTGGGAATGTACTCCG
192 TGCTACCAATCCTGGCTAACCGCAACCCTCAATCTGATCCAATCTTAGACTGCGAATGAACTCCA
** * * **
3910176 TATGCCTAAGCCAATTGATGAAACGAGCGGTC-GGGC-GGGCACTATGCCAGCCAGAGAGACAGG
257 TATGCCTAAGCCAATCAACGAAACGAGCGGGCAGGGCAGGGCACTACACCAGCCAGAGAGACAGG
*
3910239 ATGCGCAAGCCATAGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCT-ATGTG
322 ATGCGCAAGCCATAGATCCATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTCATGT-
*
3910303 CCAATGTCATTTTTACGGCTTGTAAATTCATACAATGGTCCCATAAGCCTTCACGTAAAGTTT
386 -CAATGCCATTTTTACGGCTTGTAAATTCATACAATGGTCCCATAAGCCTTCACGTAAAGTTT
3910366 CATG
1 CATG
3910370 GCAAGATGAC
Statistics
Matches: 384, Mismatches: 59, Indels: 20
0.83 0.13 0.04
Matches are distributed among these distances:
443 4 0.01
445 137 0.36
449 4 0.01
452 63 0.16
453 116 0.30
454 60 0.16
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (447 bp):
CATGCCCGAGCCTAGCATGTGCTACCGCAACCCTCGGTCGAGTCCGATCTGAGACTAGGAATGAA
CTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACAAAACGAGCGTGCGG
GCCTCAGCCAGCCAGAAGGGCGGGATGCGCAAGCTGAGGATCAGCCGGGTCCCCCTCTACGTGCT
ACCAATCCTGGCTAACCGCAACCCTCAATCTGATCCAATCTTAGACTGCGAATGAACTCCATATG
CCTAAGCCAATCAACGAAACGAGCGGGCAGGGCAGGGCACTACACCAGCCAGAGAGACAGGATGC
GCAAGCCATAGATCCATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTCATGTCAATG
CCATTTTTACGGCTTGTAAATTCATACAATGGTCCCATAAGCCTTCACGTAAAGTTT
Found at i:3910802 original size:14 final size:11
Alignment explanation
Indices: 3910762--3910794 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
3910752 CGATCAGGTT
3910762 CTCCGACGATG
1 CTCCGACGATG
3910773 CTCCGACGATG
1 CTCCGACGATG
3910784 CTCCGACGATG
1 CTCCGACGATG
3910795 GTGCTCCGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:3910914 original size:26 final size:26
Alignment explanation
Indices: 3910874--3910926 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3910864 CCGGTCCGAT
*
3910874 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3910900 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3910926 C
1 C
3910927 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3911455 original size:26 final size:26
Alignment explanation
Indices: 3911426--3911478 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3911416 CCGGTCTGAT
3911426 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3911452 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3911478 C
1 C
3911479 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3912033 original size:27 final size:26
Alignment explanation
Indices: 3911992--3912043 Score: 86
Period size: 27 Copynumber: 2.0 Consensus size: 26
3911982 CCGGTCTGAT
3911992 CTTAGACTGGCAATGAAACTCCGTATC
1 CTTAGACTGGCAATG-AACTCCGTATC
*
3912019 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGCAATGAACTCCGTAT
3912044 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 10 0.42
27 14 0.58
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATC
Found at i:3913333 original size:26 final size:26
Alignment explanation
Indices: 3913304--3913356 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3913294 CTGGTCCGAT
*
3913304 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3913330 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3913356 C
1 C
3913357 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3920589 original size:137 final size:137
Alignment explanation
Indices: 3920343--3920608 Score: 460
Period size: 137 Copynumber: 1.9 Consensus size: 137
3920333 TGAAATGAGC
* *
3920343 GTACGGGTGCTTAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATAGACCAGGTCACCCTCT
1 GTACGGGTGCTTAGCCGACCAGAGGGGCGGCATGCGCAAGCTGGGGATAGACCAGGTCACCCTCT
* *
3920408 GTGTCCTACCGATCCTACTGCCACAACCCTCGATTCGGTTTGATCTTAGACTGGGAATGAACTCA
66 GTGTCCTACCGATCCTACTGCCACAACCCTCGATTCGATCTGATCTTAGACTGGGAATGAACTCA
3920473 AACGAGT
131 AACGAGT
*
3920480 GTACGGGTGCTTAGCCGACCAGAGGGGCGGCATGCGCAAGCTGGGGATCGACCAGGTCACCCTCT
1 GTACGGGTGCTTAGCCGACCAGAGGGGCGGCATGCGCAAGCTGGGGATAGACCAGGTCACCCTCT
* * *
3920545 GTGTCCTGCCGATCCTGCTGCCACAATCCTCGATTCGATCTGATCTTAGACTGGGAATGAACTC
66 GTGTCCTACCGATCCTACTGCCACAACCCTCGATTCGATCTGATCTTAGACTGGGAATGAACTC
3920609 CGTATGCCTA
Statistics
Matches: 121, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
137 121 1.00
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (137 bp):
GTACGGGTGCTTAGCCGACCAGAGGGGCGGCATGCGCAAGCTGGGGATAGACCAGGTCACCCTCT
GTGTCCTACCGATCCTACTGCCACAACCCTCGATTCGATCTGATCTTAGACTGGGAATGAACTCA
AACGAGT
Found at i:3922046 original size:26 final size:26
Alignment explanation
Indices: 3922017--3922069 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3922007 TTGGTCCGAT
*
3922017 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3922043 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3922069 C
1 C
3922070 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3922940 original size:26 final size:26
Alignment explanation
Indices: 3922904--3922956 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3922894 TCGATCTGAT
3922904 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3922930 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3922956 C
1 C
3922957 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3923362 original size:889 final size:892
Alignment explanation
Indices: 3921294--3926990 Score: 6677
Period size: 889 Copynumber: 6.4 Consensus size: 892
3921284 CTCGATCCGA
* * *
3921294 TCTGATATTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGCGCAGGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GC-GG-G
* * * *
3921359 AACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGTGTAAGCCGTCGATCGATAGGGTGGTAG
60 --CGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * *
3921424 GTGGGTTTAGGCACGTCTTCATATGTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
123 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
3921489 CAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGA
188 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
** * *
3921554 TTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCTAAAC
253 TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * *
3921619 TTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAACTAAAAACTCAAAGTG
318 TTGGTAGACGTGATCCTTGTATTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
3921684 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
383 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * * * *
3921749 CAAACTTGTAAAATCTCAAATGCTCTTTCAGAGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAG
448 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
* *
3921814 GGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACAC-CCCACCGGCCC
513 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-CACACACCC-CCCGCCC
* * *
3921878 CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCC
576 CCCCGATCCTC-GAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
* * * * * * *
3921943 CGACGAAGAAAAATGTGGCTCCAGCACATGGCCAAGCCCAGCATGTGCTGCCGTAACCCTCGGTT
640 CGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * * *
3922008 TGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
705 CGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * ** * * ** *
3922073 AGTCAACCCACGAAACT-AGTGTGCGGGTGCTCATCCGGCAAGAGGTGCGGGATGCTTAAGCCGG
770 AGTCAACCCACGAAA-TGAGCGTGCGGGCGCTCAGCCAACCAGAGGGGCGGGATGCGCAAGCCAG
* * * * * *
3922137 GGATCG-GCTGGGTCCCCCTCTGTGTGCTGCCGATCCTACAACCGCAACCCTCAGTCTGA
834 GGATCGATC-GGGTCCCCCTCTGCGTACTACCGATCCTACTACCGCAACCCTCAGTCTGG
* * * * *
3922196 TCTAATCTTAGACTGGGAAGGAACTCCGTATGCCCAAGCCGATCGACGAAACGAGCGGGCGGGGG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC---GG
* * *
3922261 GCGGCGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG-C-TTGATCGATAGGGTGGAAGGTGG
63 GC-GAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
3922324 GTTTAGGCACATCTTCATATTTCT--GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
127 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
3922387 GGTCCCTTAAGCCTTCACGTGAAGTTTCAT---AAGACGACTCGTTTTCTATTTTTCATGATTTT
192 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
** * * * *
3922449 AAAAACTTTTTGC-GATC-CGATTTTTGAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
257 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * *
3922512 TAGACGTGATCCTTGTATTTTGGTTGGCATGCAC-AGAAAATTCAGCTAAAAACTCAAAGTGTAC
322 TAGACGTGATCCTTGTATTTT-ATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* **
3922576 AAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATGTT-AGACACTTTAATGGCTGTTGGCAGCA
386 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT-TTCAGACACTTTAATGGCTACTGGCAGCA
* * *
3922640 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTAATGAGGGATAGGG
450 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GG
*
3922705 GGCCAATAT-AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCGGCCCC
514 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-CACACACCCCCCGCCCCC
* * * * *
3922769 TCGATCACTAGAATCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCTG
578 CCGATC-CTCGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
* * * * * *
3922834 GTGAAGAAAAATGTGGCA-CAGCACATTCTCGAGCCCAGGATGTGCTGCTGCAACCCTCGGT-CG
642 GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
*
3922897 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAG
707 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *** * *
3922962 TCAACCCAAGAAATGAGCGTGCGTGCACTCAGCTGGCCAGAGGGGCGGGATGAGCAA-CCGGGGA
772 TCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCAACCAGAGGGGCGGGATGCGCAAGCCAGGGA
* * * * ** *
3923026 TTGATCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGTCACAACCCTCAGTCTGG
837 TCGATCGGGTCCCCCTCTGCGTACTACCGATCCTACTACCGCAACCCTCAGTCTGG
* *
3923082 TCTAATCTTAGACTGGGAATGAACTCCGTAT-CCTAAGCCAACCGATGAAACGAGCGGGCGGGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
* **
3923146 AGCACTACGCCGGCCAGAGAGACGAGATGCATAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
66 AGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
3923211 AGTCACATCTTCATATTTCTGTGTGCCACTGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
131 AGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
3923276 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTCACAATTTTTGAA
196 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * *
3923340 ACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTTC-AAAGGATTTTTCGCCCCAAACTTGGTAG
261 ACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
3923404 ACGTGATCCTTGTATTTTATTAGCATGCACAAAAAAATTTAGCTACAAACTCGAAGTGTACAAGA
325 ACGTGATCCTTGTATTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
** *
3923469 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTGGAGACACTTTAATGACTACTGGCAGCAAACCT
390 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
3923534 GAAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
455 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GGGGCCA
* **
3923598 ATATAAGGGCCAACAGTACCCAGCACCCATCGCACATCATGTGCCACACCACCACCTACCCCCAC
519 ATATAAGGGCC-A-AGTA-CCAGCACCCATCGCACATCATGTGCCACA-CACCCCCCGCCCCC-C
* * * * *
3923663 CGATCGTCGAACACCCCAGTGACATC-GTTAGGTTTCTCCGACGATGCTCCGACGATGGTGCCCC
579 CGATCCTCG-A-ACCCCAATGCCGTCGGTCAGG-TTCTCCGACGATGCTCCGACGATGGTGCCCC
* * * * * * *
3923727 GACGAAGAAAAATGCGGAACTAGTACTTGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGATCC
641 GGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* * * *
3923792 AAT-TCGATCTTAGACTGGGCATGAGCTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTA
706 GATCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* *
3923856 AGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCAACCAGAGGGGCGGGATGCCCAAGCCAGG
770 AGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCAACCAGAGGGGCGGGATGCGCAAGCCAGG
* * ** * * * * * * *
3923921 GATCAACCGGGTCCCTATCTGCATATTACCAATCCTGCTGCCGTAACCCTCAGT-TCAG
835 GATCGATCGGGTCCCCCTCTGCGTACTACCGATCCTACTACCGCAACCCTCAGTCT-GG
*
3923979 TCTGATCATAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGAGCACGAG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC---G--ACGA---A--ACGAG
* *
3924043 CGACGGCGGGCGGCGGCAGGTGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGAT
56 CG--GGC--G-GGC-G-A-----GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
3924108 CGATAGGGTGGTAGGTGGGTTTAGACATATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
109 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
* *
3924173 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGGCAACTCGTTT
174 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
** * *
3924238 TCTATTTTTTTCGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGCG
239 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * ** *
3924303 TTTTGGCCCCAAACCTGGTAGACATGATCCTCATATTTTTATTGGCATGCATAAAAAAATTCAGC
304 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTATTGGCATGCACAAAAAAATTCAGC
3924368 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
368 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
3924433 AATGGCTACTGGTAGCAAACCTGTAAACTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
433 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
*
3924498 TTTGATGAGGGATA-GGGCCAATGTAAGGGCCAAGTACCAGCACCCATCG-ACATCATGTGTGCA
498 TTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA--TGTGC-
* * * *
3924561 CACCCCCGCCCCCCCCCCCCCGAT-CTCGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGC
560 CACACAC-CCCCCGCCCCCCCGATCCTCGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGC
* ** * * *
3924625 TACGGTGATGGTGCCCAGGCGAAGAAAAATGCGACACCAGCACATGCCGGAGCCCAGCATGTGCT
624 TCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * * *
3924690 ACTGCAACCCTCGGTCCGATCTGATATTAGACTGGGAATGAACTCCGTATGCTTAGACCGCGAAT
689 GCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * *
3924755 AAACTCCGTACGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTCATCCGACCAGAGGGGCG
754 GAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCAACCAGAGGGGCG
* * * * * * * * * *
3924820 GGATGCGCAAGTC-GGGGTTGATCGGGTCCCCTTTTGTGTGCTATCGATCCTACTACTGTAACCC
819 GGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTGCGTACTACCGATCCTACTACCGCAACCC
* **
3924884 TCGGTCCAG
884 TCAGTCTGG
* * * **
3924893 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACGGACGAAATGAGTGGGCGGATG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
* * *
3924958 GGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTT
66 AGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
3925023 AGGCACATCTTCATATTTCTGCATGCCAATGCTATTTTTATGGCTTGTAAATTCATACAGTGGTC
131 AGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
3925088 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTA-TTTTCACGATTTTTGAA
196 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * *
3925152 ACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTTC-AAAGGAGTTTTGGCCCCAAACTTGGTAG
261 ACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
3925216 ATGTGATCCTTATATTTTATTGGCATGCACAAAAAAATTTAGCTACAAACTCGAAGTGTACAAGA
325 ACGTGATCCTTGTATTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * **
3925281 TTTTGTGACCATATCAAAAAAGTGTCCCCATTAGAGACACTTTAATGGCTACTGGCAGCAAACCT
390 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * **
3925346 GAAAAATCTCAAATTCTCTTTAAGGGGGAATGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
455 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GGGGCCA
*
3925411 ATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCC-CACACCCCCCGACCCCCCCGAT
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCCACACACCCCCCG-CCCCCCCGAT
* * * * * * * * *
3925475 CGTCGAAACCTCAATGTCGTCGATTAGGCTCTTCGACGATGCTCTGACGATGGTGCCCCGGTGAA
583 CCTCG-AACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAA
** * * * * * *
3925540 GAAAAATGCGAAACCAGTACTTACCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCAATCCG
647 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCTG
* * * * *
3925605 ATCTTAGACTGGGCATGGACTCCATTTGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAC
712 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * ** * * * * *
3925670 CCACGAAACGAGCGTGTGGGTACTTAGCCAACGAAAGGGGCGGGATGCGTAAGTCAGGGATCGAT
777 CCACGAAATGAGCGTGCGGGCGCTCAGCCAACCAGAGGGGCGGGATGCGCAAGCCAGGGATCGAT
** * * *
3925735 CGGGTCCCTATCTGCATACTGCCAATCCTACTACCGCAACCCTCAGTCTGG
842 CGGGTCCCCCTCTGCGTACTACCGATCCTACTACCGCAACCCTCAGTCTGG
* * *
3925786 TTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACGGACGAAATGAGCGGGGCGGGC
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGGCGGGC
* ** * * * * *
3925851 GGGCACTATACCGG-CAGAGAGACAAGGATGCGCCAGTCATGGATCGATTAGGGTGGTAGGAGGG
65 GAGCACTACGCCGGCCAGAGAGAC-GGGATGCGCAAGCCGTGGATCGA-TAGGGTGGTAGGTGGG
*
3925915 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCTATTTTTATGGCTTGTAAATTCAATACAA
128 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC-ATTTTTATGGCTTGTAAATTC-ATACAA
* * *
3925980 TGGTCCCTTAAGCCTTCACCGTGAAGTTTCATGGCAAGACGACTCATTTTTTATATTTCACGATT
191 TGGTCCCTTAAGCCTTCA-CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * * * *
3926045 TTGGAAACTTTTTACGGTTTGGGA-TTTTTACAACTTTTTCAGAAGGAGTTTTAGCCGCCAAA-T
255 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC-CCAAACT
* * *
3926108 TGGTAGAACGTGATCCTTGTATTTTTTTTTGGCATGCACAAAAAAAGTCAGCT-AAAACTCGCAG
319 TGGTAG-ACGTGATCCTTGTA--TTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
3926172 TGTACAAGATTTTGTGACCATTTGAAAAAAAATGT-CCCATTTCAGACACTTTAATTGCTACTGA
381 TGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
3926236 CAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGG-GT--G-TCTCAAGGTTTGATGAGGGA
445 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
* * * * *
3926297 TAGCGTCCAATATAAGGGCCAAGTACCAGCACCCATCACACATTATGT-CCGCACA--------C
510 TAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCCACACACCCCCCGCC
* * * * * * * *
3926353 CCCCCAATCATCGGAACCCCAACGTCGTCGGTCAAGTTCTCTGGCGATGCTTCGACGATGGTGCC
575 CCCCCGATCCTC-GAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
* * * *
3926418 CCGGTGAAGAAAAATACGGCACCAACACATGCCCGAG-CC--CA-GT-CTGCTG------TC-G-
639 CCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * *
3926470 -C-ATC---TCTCAG--T----TTG-A-TCCG-AT-CTTAAATTGGG-ATGAACTCCGTATGCCT
704 CCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * * * **
3926519 AAGTCAACCCACAAAACGAGCGTACGGGCGTTCAACCAGCCAGATGGGTGGGATGCTTAAGCCAG
769 AAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCAACCAGAGGGGCGGGATGCGCAAGCCAG
** * * * *
3926584 GGATC-AGTCGGGTCCCCCTCTATGTACTATCGATCCTGCTATCGCAACCCTCAAT-TCGG
834 GGATCGA-TCGGGTCCCCCTCTGCGTACTACCGATCCTACTACCGCAACCCTCAGTCT-GG
** ** * * * *
3926643 TCTGATCTTAGACTAAGAATGAACTAGGTATGCCTAAGACAACTGATGAAACGAGCGGGTAGGTG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG--CG-G
* * * * * *
3926708 GCAGGCAGGCGCTACGTCGACCAGAGAGATGGGTTGCGCAAGCCGTGGATCAATAGGGTGGTAGG
63 GC--G-A-GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
3926773 TGTGTTTAGGCACATCCTT-ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
124 TGGGTTTAGGCACAT-CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * *
3926837 CGATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAAATCGTTTTCTATTTTTCACGA
188 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* *** * *
3926902 TTTTCGAAACTTTTTACGGTTTTAGATTTTTTAAAATTTTTTCGGAGGGAGTTTTGGACCCAAAC
253 TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
3926967 -TGGTAGACG-GATCCTTGTAATTTT
318 TTGGTAGACGTGATCCTTGT-ATTTT
3926991 TGTGATCATT
Statistics
Matches: 4159, Mismatches: 527, Indels: 264
0.84 0.11 0.05
Matches are distributed among these distances:
856 9 0.00
857 167 0.04
858 13 0.00
859 77 0.02
860 51 0.01
861 23 0.01
862 48 0.01
863 27 0.01
864 8 0.00
866 1 0.00
868 5 0.00
871 3 0.00
872 1 0.00
874 1 0.00
875 2 0.00
881 36 0.01
882 7 0.00
883 46 0.01
885 94 0.02
886 164 0.04
887 128 0.03
888 111 0.03
889 498 0.12
890 52 0.01
891 214 0.05
892 318 0.08
893 322 0.08
894 170 0.04
895 130 0.03
896 212 0.05
897 105 0.03
898 96 0.02
899 49 0.01
900 93 0.02
901 37 0.01
902 49 0.01
903 3 0.00
905 6 0.00
907 8 0.00
909 3 0.00
910 4 0.00
911 1 0.00
912 4 0.00
913 1 0.00
914 55 0.01
915 228 0.05
916 13 0.00
917 16 0.00
918 16 0.00
919 183 0.04
920 90 0.02
921 129 0.03
922 32 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
AGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCCACACACCCCCCGCCCCCCCGATCCT
CGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAA
AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCTGATCT
TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAATGAGCGTGCGGGCGCTCAGCCAACCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCGGG
TCCCCCTCTGCGTACTACCGATCCTACTACCGCAACCCTCAGTCTGG
Found at i:3923829 original size:26 final size:26
Alignment explanation
Indices: 3923800--3923852 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3923790 CCAATTCGAT
* *
3923800 CTTAGACTGGGCATGAGCTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
3923826 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
3923852 C
1 C
3923853 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3927340 original size:26 final size:26
Alignment explanation
Indices: 3927304--3927356 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3927294 CCGATCCGAT
3927304 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
3927330 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
3927356 C
1 C
3927357 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3928657 original size:878 final size:879
Alignment explanation
Indices: 3926988--3931578 Score: 3725
Period size: 850 Copynumber: 5.2 Consensus size: 879
3926978 TCCTTGTAAT
* **
3926988 TTTTGTGATCATTTGAAAACAGTGTCCATATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
1 TTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
3927053 GTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCA
66 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-CAGGTTTGATGAGGGATAGGGGGCCA
* *
3927118 ATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGTGCAAACCCCCCCGGCCCCCCCGAT
130 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCCCGG-CCCCCCGAT
* * * * * *
3927183 CACCGGAACCCCAATGTCGCAGGTCAGGTTCTCCGACGATGGTGCCCCGACAAAGAGAAATGTGG
194 CATCGGAACCCCAATGTCGCCGGTCAGGTTCTCTGGCGATGGTGCCCCGGCAAAGAAAAATGT-G
* * *
3927248 CACCAGCACATGCCCGAGCCCAGAATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTG
258 CACCAGCACATGCCCAAGCCCAGAATGTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTG
* * * *
3927313 GGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCATGAAACGA
323 GGAATGAACTCCGTATGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* *
3927378 GCGTGCGGGCGCTCAACCGGCCAGAGGGGC-AGGATGCGCAAGACGGGGATCGACCGGGTTCCCC
388 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGATGATGCGCAAGAC------CGA---GG-TCCCC
** * * * * *
3927442 TCTGCGTGCTGTCGATG-TTGCTACCGTAACCCTTGGTCTGGTCCAATCTTAGACTGAGAATGAA
443 TCTGCGTGCTACCGATGCCTACTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAA
* * * * *
3927506 CTCTGTATTCCTAAGCCAACTGACGAAACGAGTGGGCGGGTGGGCGGGCGGGCACTACGCCGGCC
508 CTCCGTATGCCTAAGCCAACCGACGAAA--A-TGAGCGGGTGGGCAGGCGGGCACTACGCCGGCC
* * * * * * *
3927571 AAAAAGGCAGGATGAGTAAGCCTTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
570 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*
3927636 TTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
635 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* *
3927701 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAC-TTTTAGCGGTTT
700 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTA-CGGTTC
*
3927765 AGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGATCCAAACTTGGTAGACGTGATCCTTGTAT
764 AGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTAT
* *
3927830 TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGC
829 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
3927881 TTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTGCTGGCAGCAAACCT
1 TTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * *
3927946 GTAAAATCTCAAATGCTATTTAAGGGGGTGTGAGTTCTACAGGTTTGATAAGGGATAGGAGGCTA
66 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-CAGGTTTGATGAGGGATAGGGGGCCA
3928011 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCCCGG-CCCCCGATC
130 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCCCGGCCCCCCGATC
* *
3928075 GTCGGAACCCCAATGTCGTCGGTCAGGTTCTCTGGCGATGGTGCCCCGGCAAAGAAAAATGTGGC
195 ATCGGAACCCCAATGTCGCCGGTCAGGTTCTCTGGCGATGGTGCCCCGGCAAAGAAAAATGT-GC
*
3928140 ACCAGCACATGCCCAAGCCCAGAATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGG
259 ACCAGCACATGCCCAAGCCCAGAATGTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGG
* * *
3928205 GAATGAACTCCGTATGCTTTGACCGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAG
324 GAATGAACTCCGTATGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * *
3928270 CGTGTAGGGCGCTCAGTCGGCCAGAGGGGCGATGATGCGCAAG-CCGA-GT-CCCTCTACGTGCT
389 CGTG-CGGGCGCTCAGCCGGCCAGAGGGGCGATGATGCGCAAGACCGAGGTCCCCTCTGCGTGCT
* * ** * *
3928332 ACCGATGCCTACTGCCACAACCCTCGGTCCTGGTCTGATCTTAGACTGGGAATGAATTCCATATG
453 ACCGATGCCTACTACCGCAACCCTCGGT-CTGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* **
3928397 CCTAAGCCAACCGACGAAAA-GAGCGGGTGGGCAGGCAGGCACTGTGCCGGCCAGAGAGACGGGA
517 CCTAAGCCAACCGACGAAAATGAGCGGGTGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * *
3928461 TGCGCAAGCCGTGGATCGATAGGGTGGTCGATGGGTTTAGGCACATCTTCAGATTTCTGCATGCC
582 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
3928526 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
647 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * *
3928591 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAA
712 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAA
* *
3928656 ATATTTTT-GGAAGGAGTTTTGGACCCAAACTTCGTAGACATGATCCTTGTATTTTTGTTGGCAT
777 AT-TTTTTCGGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* *
3928720 GCACAAAACAATTC-GCTAAAAACCCGAAGTGTACAAGA
841 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * * *
3928758 TTTTGTGATCATTAGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGTTACTGGCAGCAAACTT
1 TTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
3928823 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTAGAGGTTTGATGAGGGGTAAGGGGGCC
66 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-CAGGTTTGATGAGGGAT-AGGGGGCC
* ** **** *
3928888 AATATAAGGGCCAAGTACCAGCACCCATCGCAAATCATGTGTACAAGA---TTTTGTG---ACC-
129 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAA-ACCCCCCCG-GCCCCCCG
* ** * ** ** *** * * *
3928946 AT--T-TGAA--AAAAGTGTCCCCATTTC--GAACTCT-TTAATGGTACTAGCC-GCAAACCTGT
192 ATCATCGGAACCCCAA-TGTCGCC-GGTCAGGTTCTCTGGCGATGGTGC--CCCGGCAAA---GA
* * * ** ** * * * ** *
3929002 AAAATCT-CA-AATGCTC-T--TTAAG----G-GGGTG-TG-AGT-TCTCGAGGTTTGAT--GAG
250 AAAATGTGCACCA-GCACATGCCCAAGCCCAGAATGTGCTGCCGTAACCCTCGGTCTGATCCGA-
*** * * ** * * * ** **
3929052 GGATAG--GGGGCCAATATAAGGGCCAAGTA--C-TAGCACCCATCGCACATCATGTGCGCACAC
313 TCTTAGACTGGG--AAT-GAA-CTCC--GTATGCTTAG-A-CC--GGGA-ATGAACT-C-CGTA-
* * * ** ** * * * * ** ***
3929112 TCCCT-CGACCCCCCCGATCGTCGAAAC-CTCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCC
364 TGCCTAAG-TCAACCC-A----CGAAACGAGC-GTGCGGGCGCTCA-G----CCGGCCA-G-AGG
* * *** * * * *
3929175 GACGATGGTGCCCCGACAAAGAAAAATGTGGCACCAACACATGCCCGAGC--CCAGCATG--TGC
415 GGCGATGATG---CG-C-AAGACCGA-G-GTC-CC--CTC-TG--CGTGCTACC-G-ATGCCTAC
** * * *
3929236 TGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATTAACTCCGTATGCTTAGACTAGGAA
465 TACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC-----CTA--AG
** * * *** * ** *
3929301 TGAACTTCGTATGCCTAAGTCAACTCA-CGAAACGAGC-GTGCGGGTGCT-CAACCGGCCAGAGA
523 CCAAC--CG-A---CGAA---AA-TGAGCG-GGTGGGCAG-GCGGGCACTAC-GCCGGCCAGAGA
* ** *
3929363 GACGGGATGCACAAGATGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
575 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* * * *
3929428 GCTTGCCAATTCCATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAG
640 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * *
3929493 TTTCATGGCAAGACGACTCATTTTCTATTTTTCATAATTTTCAAAAATTTTTACGGGTCAGGATT
705 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGGATT
* * * * * * * *
3929558 TTTTTAAATTTTTTCGTAAGGAATTTTTGCCCCAAGCTAGGTAGACGTGATCCTTGTATTTTTGG
770 TTTTAAAATTTTTTCGGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * *
3929623 TGGCATGCA-AAAAACAATTCAGCTAAAAACTAGAACTGTACATGA
835 TGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
3929668 TTTTGTGACCCTTTGAATAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
1 TTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
3929733 GTAAAATCTCAAATGCTCTTT-AGGGAGTGTGAGTTCTCGGAGGTTTGATGAGGGATTAGGGGGC
66 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC--AGGTTTGATGAGGGA-TAGGGGGC
* * * **
3929797 TAATATAAGGGCCAAGTACCAGCACCCATTGCAGCATCATGTGCGCAAACCCCCGACGATGGTGC
128 CAATATAAGGGCCAAGTACCAGCACCCATCGCA-CATCATGTGCGCAAACCCCC--C--CGGCCC
* **** * ** **
3929862 CCCG----GC-GAAAAGAAATGT----GG-CA----C-C-AGC-A-CATG-CCCGAGCCCAG---
188 CCCGATCATCGGAACCCCAATGTCGCCGGTCAGGTTCTCTGGCGATGGTGCCCCG-GCAAAGAAA
* ** * * * * * **
3929905 AATGTGCTGCC-GCA-A--CCCTCGGTCC-G---GT-CCGATCTTAGA--CTGGGAATGAACTCC
252 AATGTGC-ACCAGCACATGCCC-AAGCCCAGAATGTGCTG-CCGTA-ACCCTCGGTCTG-A-TCC
* *
3929959 ATATGCTTAGACTGGGAATGAA------A--C-T----C---T---------GTAT-CCTAAGTC
311 -GAT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTC
* * *
3929998 AACCCATGAAACGAGCCGTGCGGGTGCTCAGCCGGCCAGAGGGGC-AGGATGCGCAAGCCGGGGA
374 AACCCACGAAACGAG-CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGATGATGCGCAA------GA
* * * * * **
3930062 TCGATCGGGTCCCCTTCTGCATGCTAACCCGAT-CTTGCTACCGTAACCCCTC-GTCCAGTCCAA
432 CCGA---GGTCCCC-TCTGCGTGCT-A-CCGATGCCTACTACCGCAA-CCCTCGGTCTGGTCCAA
* * * * * * *
3930125 TTTTAGACTGAGAATGAACTCTGTATGCCTAAGCCAACTGACGAAACGAGTGGGCGTGTGGGCGG
490 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--A-TGAGCGGGTGGGCAG
* ** * *
3930190 GCGGGCACTACGCCGGCCAGGGAGGTGGGATGAGCAAGCCTTGGATCGATAGGGTGGTAGGTGGG
552 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
3930255 TTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATA
617 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
3930320 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTC
682 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTC
* * *
3930385 AAACCTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGACCCAAACCTGGT
747 AAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGACCCAAACTTGGT
* * *
3930450 AGACGTGATCTTTGTATTTTTTTTGGCGTGCA-AAAAAAATTTCAGCTAAAAACTCGAAGTGTAC
812 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAACTCGAAGTGTAC
*
3930514 ATGA
876 AAGA
* *
3930518 TTTTGTGA-CACTTTGAAAAAGGTGTCCCCATTTTGAGACACTTTAATGGCTACTGGCAGCAAAC
1 TTTTGTGATCA-TTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
3930582 CTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGATAGAGGGC
64 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-AGGTTTGATGAGGGATAGGGGGC
* * * ** * *
3930647 CAATATATGGGCCAAGTACTAGCACCCGTCATACATCATGTGCACACA-CCCCCCGGCCCCCCCG
128 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCCCGG-CCCCCCG
* * * * ** *
3930711 ATCATCGGAACCCCAACGCCACCGGTTAGGCTCTCTGGCAATGCTTTGGCGATGGTGCCCAAGCG
192 ATCATCGGAACCCCAATGTCGCCGGTCAGG---T-T--C--T-C--TGGCGATGGTGCCCCGGCA
* * * * * * *
3930776 AAGAAAAATGCAGCACCAACACATGCTCGAGCCCAGAATGTGCTGCCACT-ATCCTCGGTCTGGT
246 AAGAAAAATG-TGCACCAGCACATGCCCAAGCCCAGAATGTGCTGCC-GTAACCCTCGGTCTGAT
* * * **
3930840 TCGATCTTAGACTGGGAATGAACTCGGTATGCTTAGACTGGGAATGAACTCCGTATTTCTAAGTC
309 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTC
* * * *
3930905 AACCCACGGAACGAGAGTGCGGGTGCTCAACCGGCCA-AGGGGCGGGATG-TGCAAGCTGGGGAT
374 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC--GATGATGC--GC-----A-
* * * *
3930968 CGACCG-GGTCCCCCTCTGCGTGCTGCCGAT-CCTACTACCGCAACCCTCGATCTGGTCTAATCT
429 AGACCGAGGT-CCCCTCTGCGTGCTACCGATGCCTACTACCGCAACCCTCGGTCTGGTCCAATCT
* *
3931031 TAGACTGGGAATGAACTCCATATGCCTAAGCCAACTC-ACG-GAATGAGC-----GG-A--CGGG
493 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-CGACGAAAATGAGCGGGTGGGCAGGCGGG
* *
3931086 C-GT--GCTGG-C-G-G-G-CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
557 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
3931143 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCC
622 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * **
3931208 TTAAGCCTTCACGTGACGTTTCATGGCCAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAAC
687 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAC
* * * *
3931273 TTTTTACGGTTC-GAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGGCCCAAATTTGGTAGAC
752 TTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGACCCAAACTTGGTAGAC
* * *
3931337 GTGATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTTAGCTTAAAACTCGAAGTGTACAAGA
816 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
3931401 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA-TTTAATGGCTATTGGCAGCAAACCT
1 TTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
3931465 ATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCCTGAGGTTTGATGAGGGATAGGGGGCCA
66 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT-CTCAGGTTTGATGAGGGATAGGGGGCCA
* * *
3931530 ATATAAGGGCCAAGTAACTGCACCCATCGCACATCATGTGCGCACACCC
130 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCC
3931579 TCCGGTGACG
Statistics
Matches: 2957, Mismatches: 489, Indels: 515
0.75 0.12 0.13
Matches are distributed among these distances:
844 2 0.00
845 5 0.00
846 1 0.00
848 5 0.00
849 17 0.01
850 354 0.12
851 76 0.03
852 16 0.01
854 3 0.00
855 2 0.00
856 3 0.00
857 6 0.00
858 6 0.00
859 17 0.01
860 7 0.00
861 9 0.00
862 6 0.00
863 8 0.00
864 50 0.02
865 16 0.01
866 6 0.00
867 18 0.01
868 7 0.00
869 15 0.01
870 12 0.00
871 18 0.01
872 26 0.01
873 2 0.00
874 8 0.00
875 5 0.00
876 12 0.00
877 143 0.05
878 343 0.12
879 12 0.00
880 21 0.01
881 155 0.05
882 64 0.02
883 301 0.10
884 14 0.00
885 10 0.00
886 4 0.00
887 3 0.00
888 4 0.00
889 3 0.00
890 2 0.00
891 229 0.08
892 42 0.01
893 185 0.06
894 9 0.00
895 1 0.00
896 3 0.00
898 4 0.00
899 4 0.00
900 3 0.00
901 8 0.00
902 9 0.00
903 60 0.02
904 7 0.00
905 20 0.01
906 35 0.01
907 29 0.01
908 16 0.01
909 282 0.10
910 155 0.05
911 20 0.01
913 4 0.00
914 1 0.00
916 1 0.00
917 2 0.00
918 3 0.00
919 5 0.00
920 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (879 bp):
TTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCCCGGCCCCCCGATCA
TCGGAACCCCAATGTCGCCGGTCAGGTTCTCTGGCGATGGTGCCCCGGCAAAGAAAAATGTGCAC
CAGCACATGCCCAAGCCCAGAATGTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGA
ATGAACTCCGTATGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
TGCGGGCGCTCAGCCGGCCAGAGGGGCGATGATGCGCAAGACCGAGGTCCCCTCTGCGTGCTACC
GATGCCTACTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTA
AGCCAACCGACGAAAATGAGCGGGTGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
GACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTT
TTTCGGAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
Found at i:3929053 original size:177 final size:177
Alignment explanation
Indices: 3928748--3929104 Score: 590
Period size: 177 Copynumber: 2.0 Consensus size: 177
3928738 AAAACCCGAA
* *
3928748 GTGTACAAGATTTTGTGATCATTAGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGTTACTGG
1 GTGTACAAGATTTTGTGACCATTAGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGTTACTAG
* * *
3928813 CAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTAGAGGTTTGATGAGGGG
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGA
3928878 TAAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCAT
131 T-AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCAT
* * *
3928926 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGAACTCTTTAATGG-TACTAG
1 GTGTACAAGATTTTGTGACCATTAGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGTTACTAG
* *
3928990 CCGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGA
* *
3929055 TAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCAT
131 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCAT
3929102 GTG
1 GTG
3929105 CGCACACTCC
Statistics
Matches: 167, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
176 47 0.28
177 66 0.40
178 54 0.32
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (177 bp):
GTGTACAAGATTTTGTGACCATTAGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGTTACTAG
CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGA
TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCAT
Found at i:3929291 original size:26 final size:26
Alignment explanation
Indices: 3929262--3929314 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3929252 CTGGTCCGAT
* *
3929262 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
3929288 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3929314 C
1 C
3929315 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:3930881 original size:26 final size:26
Alignment explanation
Indices: 3930845--3930895 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3930835 CTGGTTCGAT
*
3930845 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3930871 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
3930896 TTCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3936015 original size:26 final size:26
Alignment explanation
Indices: 3935986--3936038 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3935976 GTTGACTTAG
*
3935986 GCATATGAAATTTATTCCCAGTCTAA
1 GCATATGAAATTCATTCCCAGTCTAA
* * *
3936012 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATATGAAATTCATTCCCAGTCTAA
3936038 G
1 G
3936039 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (26 bp):
GCATATGAAATTCATTCCCAGTCTAA
Found at i:3938482 original size:26 final size:26
Alignment explanation
Indices: 3938446--3938498 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3938436 GTTGACTTAG
* *
3938446 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATTCCCAGACTAA
3938472 GCATATGGAGTTCATTCCCAGACTAA
1 GCATATGGAGTTCATTCCCAGACTAA
3938498 G
1 G
3938499 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGACTAA
Found at i:3940865 original size:25 final size:26
Alignment explanation
Indices: 3940816--3940867 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
3940806 GTTGACTTAG
3940816 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3940842 GCATACGGGAG-TCA-TCCCAGTCTAA
1 GCATAC-GGAGTTCATTCCCAGTCTAA
3940867 G
1 G
3940868 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 12 0.48
26 9 0.36
27 4 0.16
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3945235 original size:26 final size:26
Alignment explanation
Indices: 3945199--3945251 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3945189 GTTGACTTAG
3945199 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
3945225 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3945251 G
1 G
3945252 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3947847 original size:26 final size:26
Alignment explanation
Indices: 3947816--3947868 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3947806 GTTGACTTAG
3947816 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
3947842 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3947868 G
1 G
3947869 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3948755 original size:26 final size:26
Alignment explanation
Indices: 3948719--3948770 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
3948709 TTGACTTAGC
*
3948719 CATACGGAGTTCATTCCGAATCTAAG
1 CATACGGAGTTCATTCCCAATCTAAG
*
3948745 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAATCTAAG
3948771 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAATCTAAG
Found at i:3950927 original size:886 final size:884
Alignment explanation
Indices: 3939079--3954427 Score: 15679
Period size: 902 Copynumber: 17.5 Consensus size: 884
3939069 GTGCGCGCCT
* * * * *
3939079 TTCCCAATCTAAGATCGGACTGAATCGAGGGTTGC-AGTAGCACATGCTGGGCTCGGGCATGTGC
1 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGC
* * * * * ** *
3939143 TGGTGCCACATTTTTCTTC-ACGGGGGCACCATCGCCTGAGCATCACCGGAAAAACCTAACCGGC
65 TGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCAT--CCTG-AGAACCCGACCGAC
* ** * * *
3939207 GGCATTGGGGTTCCGGTGA--GAGGGGGTCGAGGGGGTGTACGCACATGATGTGCGATGGGTGCT
126 GACATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* **
3939270 GGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAAGTTCGAGAACTCACACCCCCTTAAA
190 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
3939335 GAGCATTTGAGATTTTACATGTTTGCTGCCAGTAGCCATTAGAGTGTCTGAAATGGGGGCACTTT
255 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* ** *
3939400 CTTCAAATGGTCACAAAATCTTGTACACTTCCTGTTTTTAGCTGAATTTTTTTTTTGCATGCCAA
320 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAA
* * *
3939465 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
384 CAAAAATACAAGGATCACATCTACCAAGTTT-GGGCTAAAACTCCTTCCGAAAAAATTTTAAAAA
* * * * * * ** * * *
3939530 ATCCTGAACAGTAAAAAGTTTCT-AAAATAGTTAAAAATAGAAAATGAGTCATCCTACCAAGAAA
448 ATCCCGAACCGCAAAAAGTTT-TGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAA
*
3939594 CTTCACGTGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
512 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * * **
3939659 AGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCAATCCACAGCTTGCGCATCCTATC
577 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * * *
3939724 TCTCTGGCTGGCATAGTGCCCGCTCGCCCGTCTGCCTACTCATTTCGTCGGTTGGCTTAGGCATA
642 TTTCTGGCCGACGTAGTGCCCGC-CTCCCG-C--CC-GCTCGTTTCGTCGGTTGGCTTAGGCATA
* *
3939789 CGGAGTTCATTCCCAGTCTAAGATCGGA-CAGGACCGAGGGTTGCGGTAGCAGGATCGGCAACAC
702 CGGAGTTCATTCCCAGTCTAAGATCGGACCA-GACCGAGGGTT---GTGGCAGCA-C--C-ACA-
* * * * * * *
3939853 GTAGAGGGGGACCCGAGCGATCCCCAGGTTGCGCATCCCGCCCCTTTGGCCGGCTTAGCGCCCGT
758 --AGAGGGGGACCCGACCGATCCCGA-CTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * *
3939918 ACGTTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG-AT-C-G-G----
820 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * *
3939975 -----A--C-----T-GGACC--A---AGGGTTGCGGCAGCACATGTTGGGCTCGAGCATGTGCT
1 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
* * * * * *
3940022 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATTGCTGGAGAACCTGATCGACGGC
66 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCA-TCCT-GAGAACCCGACCGACGAC
* * *
3940087 ATTGGGGTTCCAACGTTCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
129 ATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
3940152 CTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
194 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
3940217 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTC
259 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
3940282 AATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCGTGCCAAAAAAA
324 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * *
3940347 ATACAAGGATCACGTCTACCAAGTTT-GGCTCAAAAAATCCTTCCAAAAAAATTTTAAAAAATCT
389 ATACAAGGATCACATCTACCAAGTTTGGGCT--AAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * ** *
3940411 CGAACAGCAAAAAGTCTTGAAAATCAAGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
452 CGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCA
* *
3940476 CGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCAGAAA
517 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * * * *
3940541 TACGAAGATATGCCTAAAACCACCTACCATCCTATCGATTCACGGCTTGCGCATCCCGTCTCTT-
582 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT-TTC
* * * * * *
3940605 TGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCTCATTTCATCGGTTGGCTTAGGCATAGGGAGTTC
646 TGGCCGACGTAGTGCCCG-CCTCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* *
3940670 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGAAGGATCAACAGCACATAGAGGGG
710 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGC---A-G--C-AC--CACA-AGAGGGG
* * * * * * * * * *
3940735 GATCC-AGCTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCGGCTAAGCACCCGTACGCTCAT
765 GACCCGA-CCGAT-CCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
3940799 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGGAG-TCA
828 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GGAGTTCA
* * *
3940856 -TCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCT
1 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
** * * * *
3940920 GGTGCCGCATTTTTCTTCACCGGCGCACCATCGCCGGAGCATTACCAGGGAA-CCGACCGACGGC
66 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCA-T-CCTGAGAACCCGACCGACGAC
* * *
3940984 GTTGTGG-TCCGACGATCGGTGGGGTC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
129 ATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
3941047 ACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCACACCCCCTTAAAGAG
193 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
3941112 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
258 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
3941177 GAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTT-TGCATGCCAACAAA
323 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
3941241 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCC
388 AATACAAGGATCACATCTACCAAGTTT-GGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * * * * * ** * * *
3941306 TGAACAGTAAAAAGTTTCT-AAAATAGTTAAAAATAGAAAATGAGTCATCCTACCAAGAAACTTC
452 CGAACCGCAAAAAGTTT-TGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTC
*
3941370 ACGTGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
516 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* * * * *
3941435 ATATGAAGATGTGCCCAAACCCACCTACCACCCTATCAATCCACAGCTTGCGCATCCTTGTCTAT
581 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC-CGTCTTT
* * * * *
3941500 CTGGCTGGCGTAGTGCCCGCCCGCCCGTCTGCCTACTCATTTCGTCGGTTGGCTTAGGCATACGG
645 CTGGCCGACGTAGTGCCCG-CCTCCCG-C--CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* *
3941565 AGTTCATTCCCAGTCTAAGATCGGA-CAGGACCGAGGGTTGCGGTAGCAGGATCGGCAACACGTA
705 AGTTCATTCCCAGTCTAAGATCGGACCA-GACCGAGGGTT---GTGGCAGCA-C--C-ACA---A
* * * * * * *
3941629 GAGGGGGACCCGAGCGATCCCCAGGTTGCGCATCCCGCCCCTTTGGCCGGCTTAGCGCCCGTACG
759 GAGGGGGACCCGACCGATCCCGA-CTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * *
3941694 TTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG-AT-C-G-G----
823 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * *
3941748 -----A--C-----T-GGACC--A---AGGGTTGCGGCAGCACATGTTGGGCTCGAGCATGTGCT
1 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
* * * * * *
3941795 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATTGCTGGAGAACCTGATCGACGGC
66 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCA-TCCT-GAGAACCCGACCGACGAC
* * *
3941860 ATTGGGGTTCCAACGTTCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
129 ATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
3941925 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAAAGC
194 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
3941990 ATTTGAGATTTTACAGGTTTGCTACCAGTGGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTC
259 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * ** * *
3942055 GAGTGGTCACAAAATCTTGAACACTTTTAGTTTTTAGCTTGAA-TTTTTAGTGCATGCCAAAAAA
324 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-TGAATTTTTTTGTGCATGCCAACAAA
* * *
3942119 AATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAAATTTTAAAAAATC
388 AATACAAGGATCACATCTACCAAGTTT-GGGCTAAAACTCCTTCCG-AAAAAATTTTAAAAAATC
* * ** * * * * *
3942183 CCGAACGGCAAAAAGATTCAAAAATCATGAAAAATGGAAAAGGAGTCGTCTTGCCAAGAAACTTC
451 CCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTC
* ** *
3942248 ACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAACA-CCTAGA
516 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC-AGA
** * * *
3942312 AATATGAAGATGTGATTAAACGCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCT
580 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTT
*** * * * *
3942377 CTAATCGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCATCGATTGGCTTAGGCATACGGAGTT
645 CTGGCCGACGTAGTGCCCG-CCTCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * *
3942442 CATTCCCAGTGTAAGATCGGATCGGACTGAGGGTTGCAGTAGCAGGATCTACAGCACGCAA-AGG
709 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT---GTGGCA-G--C-AC--CA--CAAGAGG
* ** * * *
3942506 GGGACCTGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCTCGCACGCTCG
763 GGGACCCGACCGATCC-CGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
3942571 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-C----C-TA---AG---A
827 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* *
3942617 TT----G-----GA-CTGGACC--A---AGGGTTGCGGA-AGCACATGCCGGGCTCGGGCATGTT
1 TTCCCAGTCTAAGATC-GGACCGGACCGAGGGTTGC-GACAGCACATGCTGGGCTCGGGCATGTG
* * * * *
3942666 CTTGTGCCGCATTTTTCTTCGTTGGGGCGCCAT---C---G--T-CGGAGAA-CCG---G-CGGC
64 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCCTGAGAACCCGACCGACGAC
*
3942717 ATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGCGTGTGCGCACATGATGTGCGATGGGTGCTGGT
129 ATTGGGGTTCCGACGATCGGGGGGCCGGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
3942782 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAG
193 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
3942847 CATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTT
258 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
3942912 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAGA-AA
323 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-ACAA
* * * * *
3942976 AAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAAATCCTTCTGGAAAAATTTTAAAAAAAT
387 AAATACAAGGATCACATCTACCAAGTTTGGGCT-AAAACTCCTTCCGAAAAAATTTT-AAAAAAT
* * ** * * *
3943041 TCCGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
450 CCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTT
* *
3943106 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGCCATGCAGA
515 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* * *
3943171 AATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCT
580 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTT
* * * *
3943236 CTGGCCGGCGTAGTGCCCG---CCCGCCCGCTCATTTCGTCGGTTGACTTAGGCATACAGAGTTC
645 CTGGCCGACGTAGTGCCCGCCTCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * * * *
3943298 ATTCCCAGTCTAAGATTGGATCAGACTGAGAGTTGCAGTAGCAGGATCAGCAGCACGTAGAGGGT
710 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT---GT----GG--CAGCACCAC-AAGAGGGG
* * * **
3943363 GACCCGATCGATCCTC-AGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTAAT
765 GACCCGACCGATCC-CGA-CTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
** * * * **
3943427 TTTATCGGTTGACTTAGGCATACAGAGTTCATTCTCAGTCTAAGCATATAGAGTTCA
828 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * ** * * *
3943484 TTCCCAGTCAAAGATCGGATCAGACCGAGGGTTGCGGTAGCACATGCTTGGCTCCGACATGTGCT
1 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
* ** * * * * ** * *
3943549 GGTGCCTCATTTTTCTTCACCGGGGCACTATCGTCGAAGCATCACCAGAGAACTTGACCGGCGGC
66 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCAT--CCTGAGAACCCGACCGACGAC
* * *
3943614 ATTGGGGTTCAGGCGATCAGGGGGGCC-GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGT
129 ATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
3943678 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGGG
193 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
3943743 CATTTGAGATTTTACTGGTTTGCTGGCAATAGCCATTAAAGTGTCTGAAATGGGGACTCTTTTTT
258 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
3943808 CAAATGGTCACAAAATCGTGTACACTTCGAGTTTTTAGTTGAATTTTTTTATGAATGCCAACAAA
323 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* *
3943873 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAACA-TTTAAAAAATC
388 AATACAAGGATCACATCTACCAAGTTT-GGGCTAAAACTCCTTCCGAAAAA-ATTTTAAAAAATC
* ** ** * * * *
3943937 CTGAACATCAAAAAGTTTCAAAAATTGTGGAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTC
451 CCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTC
* * *
3944002 ACGTGAAGGCTTAAGCGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCACGCA-AA
516 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* * * * * *
3944066 ATATAAAGATGTGCCTAAACCAACCTACCACCTTATCGATCCATGGCTTGCGCATCTCGTCTCTC
581 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTC
* * * ** * *
3944131 TGGCC-AGCGTAGTCCCCGCCCTTCCGCCTGCCAGATCGTTTAATCGGTTGGCTTAAGCATACAG
646 TGGCCGA-CGTAGTGCCCG-CC-T-C-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * * *
3944195 AGTTCATTCCCCGTCTAAGATCGGATCAGACTGAAGGTTGCGGCAGTAGGATCGATAGCACACAG
705 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGC---A-G--C---ACCACA-AG
* * * * * * *
3944260 A-GGGGACCCGATCGAACCCCGGCTGGCT-CATCCTGCCCCTTTGGCCGGCTGAGCGCTCGCACG
760 AGGGGGACCCGACCG-ATCCCGACTTG-TGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * *
3944323 CTCATTT--T--G-TG---T--G--T--TGA---C-TT---AG-----GCATACGAAGTTCA
823 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * *
3944359 TTCCCAATCTAAGATCGGACCGGACCAAGGGTT-CTGACAGCACATGCTGGGCTCGGACAAGTGC
1 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GACAGCACATGCTGGGCTCGGGCATGTGC
* * ** *
3944423 TGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCACAGCATCGCTGGAGAACCTGACC-AGCG
65 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-CT-GAGAACCCGACCGA-CG
* * ** * *
3944487 CCATTGGGGTTTCGACGATCGGAGGGGCCGAGGCAGGTGTACACACATGATGTGCGATGGGTGCT
127 ACATTGGGGTTCCGACGATCGG-GGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * *
3944552 GGTACTTGGCCCTTATATTGGCTCCCTATCCCTAATCAAACCTCGAGAACTCAAACCCCTTTAAA
190 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
3944617 GGGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
255 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
3944682 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTTGCATGCCAA
320 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAA
* * * * * *
3944747 AAAAAATATAAGGATCACGTCTACCCAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAA
384 CAAAAATACAAGGATCACATCTACCAAGTTT-GGGCTAAAACTCCTTCCGAAAAAATTTTAAAAA
** * * *
3944812 ATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
448 ATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAAC
3944877 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
513 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * * * * *
3944942 AAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATTCATGGCTTACACATCCCGTCT
578 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * *
3945007 CTCTGGCCGGCGTAGTACCCGCCCGCCCACCCGCCCGCTCGTTTTGTCGATTGGCTTAGGCATAC
643 TTCTGGCCGACGTAGT----GCCCG-CCTCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * * *** *
3945072 GGAGTTCATTCCCAGTCTAAGATTGAACCAGA---ATGGG-AGTTGCAGTA--GCAGGATTAGCA
703 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-GGGTTGTGGCAGCACCACAAGAGGGGGA
* * * * * * ** * *
3945131 -AC-A-C-A--CAGA--GGGGGA-CCCGGTCGATC--CCCGGCTGAGCACCCGCACGCTCGTTTC
767 CCCGACCGATCCCGACTTGTGCATCCC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* *
3945185 TTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
831 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * ** * *
3945239 TTTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTTTGCTTGGGCAAGTGCT
1 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
* * *
3945304 GGTGCCACATTTTTCTACGTCGGGGCACCATCG-CGGA--A-----A-AACCAGACCGAC-AGCA
66 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCCTGAGAACCCGACCGACGA-CA
* * * * *
3945359 TTGGGGTTTCGACGATCGGGGGGGCCGAGGGTGTGTACGCACATGATGTGCAAT-GGTGCTGGTA
130 TTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
3945423 CTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGC
194 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * * *
3945487 ATTTGAGATTTTACAGGTTTCCTGCCAGTA-CAATTAAAATGTCTGAAATGGGGACATTTTTTTC
259 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
3945551 AAATGGTGACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAA
324 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * *
3945616 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCATTCCGAAAAAATTTTAAAAAATCCC
389 ATACAAGGATCACATCTACCAAGTTT-GGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
** ** ** * * * *
3945681 GAACCATAAAAAGTTTCAAAAATCAAGAAAAATAAAAAACGAGTCGTCCTGCCATGAAACTTCAT
453 GAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCAC
* * *
3945746 GTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATGCAAAAAT
518 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* ** * *
3945811 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACAAATCCCATCTCTCTG
583 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTG
* * *** * *
3945876 GCCGACGTAGCGCCCGCCCGCCCATCCGCCCGCTCGTTTCGTTAATTTGCTTAGGCATACGAAGT
648 GCCGACGTAGTGCCCG--C-CTC--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * *
3945941 TCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGTAGTAGCAGGATCGACAGCACGTAGAGG
708 TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGT-G--GCA-G--C-AC--CAC-AAGAGG
* * * * * *
3946006 GGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAACACCCGCACGCTCG
763 GGGACCCGACCGAT-CCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* *
3946071 TTTCGTGGATTGACTTAGGCATACGAAGTTCATTCCCAG--T---C-TA---AG----
827 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
3946116 -----A-TC--AGATC--A---GACCGAGGGTTGC-AGCAGCACATGCTGGGCTCGGGCATGTGC
1 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGC
* * ** * **
3946167 TGGTCCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACTTGACCGAC-A
65 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC--CTGAGAACCCGACCGACGA
* *
3946231 GCATTGGGGTTCTGGCGATCGGGGGG-C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
128 -CATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
3946294 TACTTGGCCCTTATATTGGCCCCCGATCCCTCATCAAACCTCGAGAACTCACA-CCCCATAAAGA
192 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
3946358 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTT
257 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
3946423 TCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAACTGAAATTTTTTGTGCATGCCAACAA
322 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * ** * ***
3946488 AAATACAAGGACCACGTCTACCAAGTTTGGGACCAAAAAACTTTTAAAAAAAATTTTAAAAAATC
387 AAATACAAGGATCACATCTACCAAGTTTGGG-CTAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * * *
3946553 CCGAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAATTC
451 CCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTC
* * * * * *
3946618 ACGTGAAGGCTTAA-GGAGCCATTCTATAAATTGACAAGCCATAAAAATGGCATTGGCCTACAAA
516 ACGTGAAGGCTTAAGGGA-CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* * * *
3946682 AATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGACTTACGCATCCTGT-TTC
580 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTT-
* ***
3946746 TCTGGCCGACGTAGTGTCCG--T-CCGCCCGCTCGTTTCGTTAATTGGCTTAGGCATACGGAGTT
644 TCTGGCCGACGTAGTGCCCGCCTCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * *
3946808 CATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG-GGACAGCAGGATCAGTAGCACGCAGAGG
709 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGG-CAGC---A-C-----CAC-AAGAGG
** * * * * * * * *
3946872 GGGACTTGGCCGATACCTGGCTTGCGCATCCCGCCCTTCTGACCGGCTGAGCGCCCGCACACTTG
763 GGGACCCGACCGAT-CCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* *
3946937 TTTTGTGGGTTGACTTAGGCATACGAAGTTCA-T-----TC----C--A---AG-TC-
827 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * *
3946978 -T---A---T--GATCGGATCGGACCGAGGGTTGCAACAGCACATGCTGGGCTCAGGCCTGTGCT
1 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
** * * * * *
3947034 GGTGCCATATTTTTCTTC-ACCGAGCACCATCGCCGGAG-AACCT--G-A-CC-A--G-CGGCAT
66 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCCTGAGAACCCGACCGACGACAT
* * *
3947089 TGGGGTTCCGGCGAT-AGGGGG-CTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
131 TGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
3947152 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTGAAGAGCAT
196 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
3947217 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
261 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
*
3947282 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGTATGCCAACAAAAA
326 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAA
* *
3947347 TACAAGGATCACGTCTACCAAGTTTCGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
390 TACAAGGATCACATCTACCAAGTTT-GGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
* * * * * * *
3947412 AACAGCAAAAA-TTTTGAAAATCATGAAAAACAAAAAACAAGTCGTCTTGCCATGAAACTTCATG
454 AACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACG
3947476 TGAAGGCTTAAGGGACCATTGTATGAATTT--AAGCCATAAAAATGGCATTGGCCCAT--AGAAA
519 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG--CATGCAGAAA
* * *
3947537 TATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCTCGT-TTCTC
582 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTT-TC
* * ** *
3947601 TGGCC-AGCGTAATGCCCGCCCGTCCGCCCGCCCGCTTGTTTCGTCAATTGGCTTAGGCATACAG
646 TGGCCGA-CGTAGTGCCCG-CC-T---CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * *
3947665 AGTTCATTCCCAGTCCAAGATCAGACCGGACCGAGGGTTACGGTAGCAAG-ATCGGCAGCACGCA
705 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT---GTGGC-AGCA-C--CA-CA---A
* * * * * ** * *
3947729 GAGTGGGA-CCTAGCCGATCCCCAGCTTGCGCATCCCGCCCTTCTGGCTAGCTGAGCGCTCGCAT
759 GAGGGGGACCCGA-CCGATCCCGA-CTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
3947793 ACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
822 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * *
3947856 TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCACATGCTGGGCTGGGGCATGTGCT
1 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
* * * * * * * * *
3947921 GGTGCCGCATTTTTCTTCGCCGGGGCACAATCGCAGAATCATCGC-CAGAGACCTTGACCGGCGG
66 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-CTGAGA-ACC-CGACCGACGA
*
3947985 CATTGGGGTTCCGGCGATCGGGTGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
128 CATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* ** * *
3948049 TACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCATAGCCCCTTAAAGA
192 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * * *
3948114 GCATTTGAGATTTTATAGGTTTGCAG-CAGTAACCATTAAAGTGTCTGAAATGGGGACAGTTTTT
257 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * *
3948178 TGAAATGGTCACAAAATCTTCTACACTTTGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAAAA
322 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACA
* * * * * *
3948243 AAAATACAAGGATCACGTCTACAAAGTTTAGGGCT-AAACTTCTTTCAAAAAAATTTAAAAAAAT
386 AAAATACAAGGATCACATCTACCAAGTTT-GGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * ** * * *
3948307 CTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTT
450 CCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTT
* *
3948372 CACGTGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCATGCAGA
515 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* * * * *
3948437 AATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCTGCCTCT
580 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTT
* * * * * *
3948502 CTGGCCGACATAGTGCCCGCCCACCCGCCAGCCTGCTCATTCCATCGGTTGGCTTAGGCATACGA
645 CTGGCCGACGTAGTGCCCG-CCTCCCG-C--CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * ** * * * *
3948567 AGTTCATTCCCTGTCTAAGATCAGACTGGACCAAGGCTTGCGGTAGCAAGATCGGCAGCACGTAG
705 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGC---A-C--CA-CA---AG
* * ** *
3948632 AGGGGGACCC-AGTCGATCCTCGACTTGCGCATCCCGTGCCTCTGGCCGGCTGAGCGCCCGCACA
760 AGGGGGACCCGA-CCGATCC-CGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * *
3948696 CTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTCATTCCGAATCTAAGCATACGGAGTTCA
823 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * *
3948758 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCCGGGCTTGGGCATGTGCT
1 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
* ** * * *
3948823 GGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCGGAG-A-ACT-TG-A-CCG---G-CGGCAT
66 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCCTGAGAACCCGACCGACGACAT
* * * * **
3948879 TGGGGTTCCGACGATAGGGGGGTCGGGGGAGTGTGCGCACAAGATGTGAAATGGGTGCTGGTACT
131 TGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
3948944 TGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
196 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* ** *
3949009 TCGAGATTTTACAGGTTTGCTGCCAGTAAACATTAAAGTGTCTGAAATAGGGACACTTTTTTCAA
261 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * *
3949074 ATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTAAATTTTTTTATGCATGCCAACAAAAAT
326 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * *
3949139 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAGAAATCCCGA
391 ACAAGGATCACATCTACCAAGTTT-GGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
* * * *
3949204 ACCGTAAAAAG--TT-----T--TGAAAAATAGAAAACGAGTCGTCTTG-CACTAAAACTTCACA
455 ACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCA-TGAAACTTCACG
* ***
3949259 TGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
519 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * * *
3949324 TGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGACTTGCGCATCCAGTCTCTCTGG
584 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGG
* *
3949389 CCGGCGTAGT----G-CT--CGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
649 CCGACGTAGTGCCCGCCTCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * *
3949447 CCAGTCTAAGATTGGACC-GAACTGAGGGTTGTGGTAGTAGGATCGACAACATGTAGAGGAGGAC
714 CCAGTCTAAGATCGGACCAG-ACCGAGGGTTGT-G--GCA-G--C-ACCACA---AGAGGGGGAC
* * * ** * * * *
3949511 TCGGCCGATCCCCGGCTTACGCATCCCGCCCCTATGGCAGGCTGAGCGCCCG-A-ACAC---TC-
768 CCGACCGAT-CCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
*
3949570 ---G-T---TT---CAT---GAGTT-A-----ACT-TAAGCATACGGAGTTCA
832 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * *
3949603 TTCCCAGTCTATGATCGGACCAGACCGAGGGTTGTGACAGCACATGCTAGGCTCGGGCATGTGCT
1 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
* ** * * * * * * *
3949668 GGTGCCGCATTTTTCTTCGCCCTGGTACGATCACCAGAGCATCGTCGGAGAACCTGACCGACGGC
66 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC--CTGAGAACCCGACCGACGAC
* * * *
3949733 ATTGGGGTTCCGGCGATTGGGGGGGCCGAGGGAGTGTGCGCACATGATGTGCGATGGGTGCTGGT
129 ATTGGGGTTCCGACGA-TCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
3949798 ACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
193 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
3949862 CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
258 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* ** * * *
3949927 CAAATTGTCACAAAATCTTACACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAC
323 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * *
3949992 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTACCG-AAAAATTTTAAAAAAATC
388 AATACAAGGATCACATCTACCAAGTTT-GGGCTAAAACTCCTTCCGAAAAAATTTT-AAAAAATC
* ** * *
3950056 CCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACCTC
451 CCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTC
** *
3950121 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCATTGGCATGTAGAA
516 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* *
3950186 ATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCAATGGCTTGCGCATCCCGTCTTT
581 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC-ACGGCTTGCGCATCCCGTCTTT
* * * *
3950251 CTGACCGACATAGTGCCCGCCTACCCGCCCGCTCGTTTCGTTGGTTGGCATAGGCATACGGAGTT
645 CTGGCCGACGTAGTGCCCGCCT-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * ** *** *
3950316 CATTCCTAGCCTAAGATCAAATTGGACTGAGGGTTGTGGCAGCA-CA-AAGAGGGGGACCC-AGC
709 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACCACAAGAGGGGGACCCGA-C
* * * * * * *
3950378 CGATCTCGGCTTGCGCATCCCACCCCTATGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTT
773 CGATCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * *
3950443 GACTGAGGCATATGGAGTTCATTCCCAGTCTAAGCATGCAGAGTTCA
838 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* *
3950490 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGTACATGCTGGGCTCGGGCATGTGCT
1 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
* ** *
3950555 AGTGTTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACTGGAGAACCCGACTGACGAC
66 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-CT-GAGAACCCGACCGACGAC
3950620 ATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGC-ATTGGGTGCTGGT
129 ATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA-TGGGTGCTGGT
* * * *
3950683 ACTTGGCCCTTGTATTGGCCCCTTATCCATCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
193 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
3950748 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGTACACATTTTT
258 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
3950813 CAAGTGGTCACAAAATCTTGTAGACTTCGAGTGTTTAGCTGAAATTTTTTGTGCATGCCAACAAA
323 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
3950878 AATACAAGGATTACATCTACCAAGTTTGGTGCTAAAACTCCTTCCGAAAAAATTTAAAAAAATCT
388 AATACAAGGATCACATCTACCAAGTTTGG-GCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
** *
3950943 CGAACCTTAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCA
452 CGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCA
*
3951008 CGTGAAGGCTTAAGGGCCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
517 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * * * *
3951073 TATGAAGATTTTCCTAAACCAACCTACCACCCTATCAATGCACGGCTTGCGCATCCCGTCTCTT-
582 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT-TTC
* * * * * *
3951137 TGGACGGCGTCGTGCCCGCCTGCTCGCCCGCTTGCTCGTTTCGTCGATTGGCTTAGGCATACAGA
646 TGGCCGACGTAGTGCCCGCCT-CCCG-CC-C--GCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * *
3951202 GTTCATTCCTAGTCTAAGATCGGACCACACCAAGGGTTGCGGCAGCAGGATCAGCAGCACGCAAA
706 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGC---A-C--CA-CA---AGA
*
3951267 GGGGGACCCGACCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCT
761 GGGGGACCCGACCGAT-CCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* *
3951332 CGTTCCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
825 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * *
3951392 TTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCT
1 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
* * * * * *
3951457 GGTCCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCGAAGAATCTGACCGGCGAC
66 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-CTG-AGAACCCGACCGACGAC
* * *
3951522 ATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGTGTACACACATGATGTGCAATGGGTGCTGGT
129 ATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
3951585 ACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTTACACTCCCTTAAAGAG
193 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * *
3951650 CAGTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAACTGTCTGAAATGGGGACACTTTTTT
258 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
*
3951715 CAAATGGTCACAAAATCTTGTACACTTCGAGTGTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
323 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* *
3951780 AATACAAGGATTACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
388 AATACAAGGATCACATCTACCAAGTTT-GGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * * *
3951845 CGAACCTCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTTGTCCTGCCATGAAACTTCA
452 CGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCA
* * * ** *
3951910 CGTGAAGGCTTAAAGGACCATTGCATGAATTTGCAAGTAATAAAAATGGCATTGGCATGCAAAAA
517 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * * * *
3951975 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTCGCTCATCTCGTCTCTCT
582 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCT
* * *
3952040 GGCCGACGTAGTGCCCGCCCGTCCGGTTGCCCGATCCTTTCGTCGGTTGGCTTAGGCATACGGAG
647 GGCCGACGTAGTGCCCG-CC-TCC---CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * ** *
3952105 TTCATTCCCAGTCTAAGATCGAACC-GAATCGAGGGTTACGATCCCAAGATCGGTAGCACACAGA
707 TTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTT--G-TGGC-AG--C---ACCACA-AGA
* * * * * *
3952169 GGGGGAACCGATCGATCCCCGACTTATGCATCCCGCCCCTCTCGTCGGTTGAGCGCCCGCACGCT
761 GGGGGACCCGACCGAT-CCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * *
3952234 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTAA
825 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
** * * * * * *
3952294 TTCTTAGTCTAAGATTGGATCAGATCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATCTGCT
1 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
3952359 GGTGCCGCATTTTTCTTCGTCGGGG---CA----C----CAT-C---G---CCG---GACGACAT
66 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCCTGAGAACCCGACCGACGACAT
* * * * *
3952403 TGGGGTTTCGGCGATTGGGGCGGCCAGTGGGGGTGTGCGCACATGATCTGCGATGGGTGCTGGTA
131 TGGGGTTCCGACGATCGGGG-GGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
3952468 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCGTAAAAAGC
194 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
3952533 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-----A---T-T-AAATGGGGACACTTTTTTC
259 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
3952588 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTGTGCATGCCAACAAAA
324 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * *
3952653 ATACAAGGATCA-AGTCTACCAAGTTTGGGGTCAAAACTCCTTCTGAAAAAATTGTAAAAAATCC
389 ATACAAGGATCACA-TCTACCAAGTTTGGGCT-AAAACTCCTTCCGAAAAAATTTTAAAAAATCC
*
3952717 CGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTTCCATGAAACTTCA
452 CGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCA
* * * * ***
3952782 CGTGAAGGCTTAAGGAACCATTTTGTGAATTTACAAGCCATAAAAATGGCATTGTCACATAGAAA
517 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
*
3952847 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTT-
582 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT-TTC
* *
3952911 TGGCCGGCGTAGTGCCCGCCT---GCCCGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCA
646 TGGCCGACGTAGTGCCCGCCTCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * **
3952973 TTCCCAGTCTAAGATGGGACAAGACCGAGGGTTGTAGCAGCAGGATCAGCAGCACGCAGAGGGCC
711 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGT-G--GCA-G--CA-C--CAC-AAGAGGGGG
* * * * * *
3953038 ACTCGACCGATCCCGGCTTGTGCATCCCGCCCTTCTGGTCGGCTGAGCGCCCACACACTCGTTTC
766 ACCCGACCGATCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * *
3953103 GTGGGTTGACTTAGGCACACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCA
831 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * *
3953157 TTCCCAGTCTAAGAT-GAGATCGGACCGAGGGTTCCGGCAGCACATGCTGGGCTCAGGCATGTGC
1 TTCCCAGTCTAAGATCG-GACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGC
*
3953221 TGGTGCCACATTTTTCTTCGTCGGGGCACCAT--------CA---T-------CG---GACGACA
65 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCCTGAGAACCCGACCGACGACA
* * *
3953265 TTAGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTAG
130 TTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * * *
3953330 TTGGCGCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCTCGTAAAGAGCA
195 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
3953395 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTGTTTTCA
260 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * *
3953460 AATAGTCACAAAATCTTGTACACTTCAAGTTTTTAACTGAATTTTTTTGTGCATGCCAAAAAAAA
325 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC--AACAAA
** * *
3953525 AATACAAGGATCATGTCTACCAAGTTTGGGGTCAAAACTCCTTCTGAAAAAATTTTAAAAAATCC
388 AATACAAGGATCACATCTACCAAGTTTGGGCT-AAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* ** * *
3953590 CGAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCA
452 CGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCA
** ***
3953655 CGTGAAGGCTTAAGGGACCATTGTACAAATTTACAAGCCATAAAAATGGCATTGGCACAAAGAAA
517 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * *
3953720 GATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCT
582 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCT
* * ** *
3953785 GGCCGTCGTAGTGCCAGCCCTCTTGCCCGCTCGTTTCGTCGGTTGGCTAAGGCATACGGAGTTCA
647 GGCCGACGTAGTGCCCG-CCTCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * ** * *
3953850 TACCCAGCCTAAGTTTGGACTGGACCGAGGGATGCGGTAGCAGGATCACCAGCACGTAGAGGGGG
711 TTCCCAGTCTAAGATCGGACCAGACCGAGGG-T--TGTGGCA-G--CACCA-CA---AGAGGGGG
* * *** * *
3953915 ACCCGATCGACCCCCGACTTACACATCCCGCCCCTCTGG-CGG-TCGAGCGCCTGCACGCTCATT
766 ACCCGACCGA-TCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCT-GAGCGCCCGCACGCTCGTT
* * *
3953978 TCATTGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G----
829 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * *
3954026 -----A--C-----T-GGACC--A---AAGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCT
1 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
* * * ** ** *
3954073 GGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAAGAACTTGACCGGTGGC
66 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-CTG-AGAACCCGACCGACGAC
* * * * *
3954138 ATTAGGGTTCCAACGATCGGAGGGGCCGGGGGGGTGTTCGCTCATGATGTGCGGTGGGTGCTGGT
129 ATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
3954203 ACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAACTCATACCCCCTTAAAGTG
193 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
3954268 CATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAATGTCTAAAATGGGGTCACTTTTTT
258 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
3954333 CAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTACCTGAATTTTTTTATGCATGCCAACGAA
323 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
3954398 AATACAACGATGA-AGTCTAACAAGTTTGGG
388 AATACAAGGATCACA-TCTACCAAGTTTGGG
3954428 GCACCATCAC
Statistics
Matches: 12421, Mismatches: 1457, Indels: 1173
0.83 0.10 0.08
Matches are distributed among these distances:
845 107 0.01
846 3 0.00
849 1 0.00
850 1 0.00
851 65 0.01
852 8 0.00
853 103 0.01
854 130 0.01
855 371 0.03
856 346 0.03
857 106 0.01
858 263 0.02
859 205 0.02
860 16 0.00
861 337 0.03
862 39 0.00
863 210 0.02
864 499 0.04
865 232 0.02
866 302 0.02
867 71 0.01
868 26 0.00
869 44 0.00
870 19 0.00
871 201 0.02
872 358 0.03
873 790 0.06
874 449 0.04
875 469 0.04
876 45 0.00
877 880 0.07
878 734 0.06
879 159 0.01
880 118 0.01
881 62 0.00
882 129 0.01
883 175 0.01
884 6 0.00
885 95 0.01
886 379 0.03
887 212 0.02
888 21 0.00
889 73 0.01
890 62 0.00
891 193 0.02
892 122 0.01
893 9 0.00
894 76 0.01
895 355 0.03
896 519 0.04
897 60 0.00
898 97 0.01
899 77 0.01
900 370 0.03
901 200 0.02
902 1382 0.11
903 24 0.00
904 5 0.00
905 5 0.00
906 3 0.00
908 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (884 bp):
TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCCTGAGAACCCGACCGACGACAT
TGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
ACAAGGATCACATCTACCAAGTTTGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
CCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTG
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCC
GACGTAGTGCCCGCCTCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACCACAAGAGGGGGACCCGACCGATCCCG
ACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
Found at i:3951381 original size:26 final size:26
Alignment explanation
Indices: 3951352--3951404 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3951342 GTTGACTTAG
3951352 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
3951378 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3951404 G
1 G
3951405 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:3954733 original size:309 final size:309
Alignment explanation
Indices: 3954167--3954738 Score: 905
Period size: 309 Copynumber: 1.9 Consensus size: 309
3954157 GAGGGGCCGG
* * *
3954167 GGGGGTGTTCGCTCATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
1 GGGGGTGTGCGCTCATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * * *
3954232 TCAACAAACCTCGAGAACTCATACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGTCAG
66 TCAACAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
3954297 TAGCCATTAAAATGTCTAAAATGGGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
131 TAGCCATTAAAATGTCTAAAATGGGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
* ** * *
3954362 AGTTTTTACCTGAATTTTTTTATGCATGCCAACGAAAATACAACGATGAAGTCTAACAAGTTTGG
196 AGTTTTTACCTAAAGGTTTTTATGCATGCCAACAAAAATACAACGATCAAGTCTAACAAGTTTGG
3954427 GGCACCATCACCGGACGAGATTGGGGTTTCGACGATCGGGGCAGCCGAT
261 GGCACCATCACCGGACGAGATTGGGGTTTCGACGATCGGGGCAGCCGAT
*
3954476 GGGGGTGTGCG-TACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGGCCCCTATCC
1 GGGGGTGTGCGCT-CATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
3954540 TTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
65 CTCAACAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
3954605 GTAGCCATTAAAGTGTCTCAAAT-GGGTACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
130 GTAGCCATTAAAATGTCTAAAATGGGGT-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * * *
3954669 CAAGTTTTTAGCTAAAGGTTTTTGTGCATTCCAACAAAAATACAAGGATCATGTCTACCAAGTTT
194 CAAGTTTTTACCTAAAGGTTTTTATGCATGCCAACAAAAATACAACGATCAAGTCTAACAAGTTT
3954734 GGGGC
259 GGGGC
3954739 CAAAACTCCT
Statistics
Matches: 238, Mismatches: 23, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
308 5 0.02
309 233 0.98
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (309 bp):
GGGGGTGTGCGCTCATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCAACAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAATGTCTAAAATGGGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
AGTTTTTACCTAAAGGTTTTTATGCATGCCAACAAAAATACAACGATCAAGTCTAACAAGTTTGG
GGCACCATCACCGGACGAGATTGGGGTTTCGACGATCGGGGCAGCCGAT
Found at i:3955211 original size:26 final size:26
Alignment explanation
Indices: 3955181--3955233 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3955171 GTCGACTTAG
*
3955181 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
3955207 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
3955233 G
1 G
3955234 ATCGAATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:3956779 original size:706 final size:710
Alignment explanation
Indices: 3955277--3956925 Score: 2244
Period size: 706 Copynumber: 2.3 Consensus size: 710
3955267 CTGGGCTCGA
* ** *
3955277 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCACACAAAAACATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAG
*
3955342 GTGTGCCTAAACCCACCTACCACCCTATCGATGCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
66 ATGTGCCTAAACCCACCTACCACCCTATCGAT-CACGGCTTGCGCATCCCGTCTCTCTGGCC-GC
* * * * *
3955407 GTAATGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTC
129 G-AA--CCCG--CACCCGCCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGAAATTCATTC
* * * *
3955472 CCAATCTAAGATTCGACCATACCGAGGGTTGCGGCAGCAAATGCTGGGCTCGAGCTTGTACTGGT
189 CCAATCTAAGATTCGACCAGACCGAGGGTTGCGACAGCAAATGCTAGGCTCGAGCATGTACTGGT
* * * *
3955537 AGCATAATTTTCTTCACCGGGGCACCATCACCAGAGCATCTTCGGAGAACCTGACCGGCTGCATT
254 AGCATAATTTTCTTCACCAGGGCACAATCACCAGAGCATCGTCGGAGAACCTGACCGGCGGCATT
* * * ** **
3955602 GGGTTTTCGGTGATCGGGGGGCGGGGGGGTGTGTGCACATGATGTGCTATGGGTGCTGGTACTTG
319 GGGGTTCCAGCCATCGGGGGGCGGGGGGGTGTACGCACATGATGTGCTATGGGTGCTGGTACTTG
*
3955667 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCCTTAAAGAGTATTT
384 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCCTTAAAGAGCATTT
* *
3955732 GAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
449 GAGATTTTACAGGTTCGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * *
3955797 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAT
514 GGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTTATGCATGACAAAAAAAATAC
*** *
3955862 AAGGATCACGTCTACCAAGTTTGGGTTTAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCAAAC
579 AAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCCAAAAAATTTTAAAAAATCCCAAAC
3955927 CGCAAAAAGTTTCAAAAAATGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
644 CGCAAAAAGTTTCAAAAAATGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
3955992 AG
709 AG
* *
3955994 GCTTACGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAG
* * *
3956059 ATGTGCCAAAACCCACCTACCACCCTATCGATCTACGGCTTGC-CAATCCCGCCCCTCTGGCCG-
66 ATGTGCCTAAACCCACCTACCACCCTATCGATC-ACGGCTTGCGC-ATCCCGTCTCTCTGGCCGC
* * * *
3956122 G-A-CTG-A-GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCATTCCCAGT
129 GAACCCGCACCCGCCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGAAATTCATTCCCAAT
* * * * * * * *
3956183 CTAAGA-TCAGACTAGATCGAGGGTTGTGATAGCACATTCTAGGCTCGGGCATGTGCTGGT-GTC
194 CTAAGATTC-GACCAGACCGAGGGTTGCGACAGCAAATGCTAGGCTCGAGCATGTACTGGTAG-C
* * *
3956246 ATATTTTTCTTCGCCAGGGCACAATCGCCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
257 ATAATTTTCTTCACCAGGGCACAATCACCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
*
3956311 GTTCCAGCCATTGGGGGGCCGGGGGGGTGTACGCACATGATGTG-TGATGGGTGCTGGTACTTGG
322 GTTCCAGCCATCGGGGGG-CGGGGGGGTGTACGCACATGATGTGCT-ATGGGTGCTGGTACTTGG
* *
3956375 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTG
385 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCCTTAAAGAGCATTTG
** **
3956440 AGATTTTACAGGTTCGCTGCCAGTAGCTGTTAAAGTGTCTGAAATGGGGACGTTTTTTTCAAATG
450 AGATTTTACAGGTTCGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
3956505 GTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTTATGCATGACAAAAAAAATACA
515 GTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTTATGCATGACAAAAAAAATACA
* *
3956570 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAATTTTAAAAAATCCCGAACC
580 AGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCCAAAAAATTTTAAAAAATCCCAAACC
* ** * *
3956634 GTAAAAAGTTT-TGAGAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
645 GCAAAAAGTTTCAAAAAAT-GTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
3956698 AG
709 AG
*
3956700 GCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGCAAAAATATGAAG
1 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAG
*
3956765 ATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
66 ATGTGCCTAAACCCACCTACCACCCTATCGAT-CACGGCTTGCGCATCCCGTCTCTCTGGCCG-C
* * * * * * * * * *
3956830 GTAGTGCCTGC-CCGCCCTCCTGCCCGCTTGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATT
129 G-A--ACCCGCACC-CGC-CC-GCACGCTCGTTTCGTCGGTTGACTTAGGCATACGAAATTCATT
* *
3956894 CCCAGTCTAAGA-TCAGACCGGACCGAGGGTTG
188 CCCAATCTAAGATTC-GACCAGACCGAGGGTTG
3956926 TGATAGCAGG
Statistics
Matches: 820, Mismatches: 91, Indels: 42
0.86 0.10 0.04
Matches are distributed among these distances:
705 7 0.01
706 364 0.44
707 257 0.31
708 1 0.00
710 2 0.00
713 4 0.00
715 3 0.00
716 5 0.01
717 177 0.22
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (710 bp):
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCACGGCTTGCGCATCCCGTCTCTCTGGCCGCGA
ACCCGCACCCGCCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGAAATTCATTCCCAATCT
AAGATTCGACCAGACCGAGGGTTGCGACAGCAAATGCTAGGCTCGAGCATGTACTGGTAGCATAA
TTTTCTTCACCAGGGCACAATCACCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTC
CAGCCATCGGGGGGCGGGGGGGTGTACGCACATGATGTGCTATGGGTGCTGGTACTTGGCCCTTA
TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCCTTAAAGAGCATTTGAGATTT
TACAGGTTCGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
AAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTTATGCATGACAAAAAAAATACAAGGATC
ACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCCAAAAAATTTTAAAAAATCCCAAACCGCAAAA
AGTTTCAAAAAATGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
Found at i:3957623 original size:900 final size:899
Alignment explanation
Indices: 3956171--3958325 Score: 2939
Period size: 902 Copynumber: 2.4 Consensus size: 899
3956161 GCATACGAAA
* * * * *
3956171 TTCATTCCCAGTCTAAGATCAGACTAGATCGAGGGTTGTGATAGCACATTCTAGGCTCGGGCATG
1 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGTAGCACATGCTAGGCTCGGGCATG
* * *
3956236 TGCTGGTGTCATATTTTTCTTCGCCAGGGCACAATCGCCAGAGCATCGTCGGAGAACCTGACCGG
66 TGCTGGTGTCATATTTTTCTTCGCCAGGGCACCATCGCCAGAGCATC-CCGGAGAACCTGACCGA
* * * * * *
3956301 CGGCATTGGGGTTCCAGCCAT-TGGGGGGCCGGGGGGGTGTACGCACATGATGTGTGATGGGTGC
130 CGGCATTAGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
3956365 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAA
194 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * **
3956430 AGAGCATTTGAGATTTTACAGGTTCGCTGCCAGTAGCTGTTAAAGTGTCTGAAATGGGGACGTTT
259 AGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGC-ATTAAAGTGTCTGAAATGGGGACACTT
*
3956495 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTTATGCATGACAA
322 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTGTTATGCATGACAA
* * *
3956560 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAA
387 AAAAAATACAAAGATCACGGCTAACAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAA
* * *
3956625 TCCCGAACCGTAAAAAGTTTTGAGAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
452 TCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
3956690 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGCAA
517 TCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCAGAAAAATGGCATTGGCACGCAA
* *
3956755 AAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGCATCCCGTCTC
582 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC-TCCCATCTC
* * *
3956820 TCTGGCCGACGTAG-T-GCCTGCCCGCC-CTCCTGCCCGCTTGTTTCATCAGTTGGCTTAGGCAT
646 TCTGGCCGACGTAGTTCGCCTGCCCGCCGC-CC-GCCAGCTCGTTTCATCAGTTGGCCTAGGCAT
* * * * * **
3956882 ACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGTGATAGCAGGATTGGTAGCA
709 ACGGAGTTCATTCCCAGTCTAAGATC-GCACCGAACCGAGGGTTGCGACAGCAAGATCGACAGCA
* * * * * * *
3956946 TGCAGAGGGGGACCCGGCCGATTCCCGGCTTACGCATCCCGCCCCTCT-GACCG-GTCGGGCGCC
773 CGCAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCCACCCCTCTAG-CCGACT-GAGCGCC
* * ** *
3957009 CGCACGTTTGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTC-CTAGTCTAAGCAGATGGAG
836 CACACGCTCATTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCGC-AGTCTAAGCAGACGGAG
* * *
3957073 TTCATTCCCAATCTAAGATTGGACCAGACCAAGGGTTGTGGTAGCACATGCTAGGCTCGGGCATG
1 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGTAGCACATGCTAGGCTCGGGCATG
* * ** * *
3957138 TGCTGGTGTCGTATTTTTCTTC-CCCGGGCACCATCATCGGAGCATCACCGGAGAACCTGACTGA
66 TGCTGGTGTCATATTTTTCTTCGCCAGGGCACCATCGCCAGAGCATC-CCGGAGAACCTGACCGA
* * * * *
3957202 CGACATTTGGATTACGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
130 CGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
3957267 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCTCACCCCCTTAAA
195 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
3957332 GAGCATTTGAGATTTTACAGGTTTGCTGCAGTAGTCATTAAAGTGTCTGAAATGGGGACACTTTT
260 GAGCATTTGAGATTTTACAGGTTTGCTGCAGTAG-CATTAAAGTGTCTGAAATGGGGACACTTTT
* * * * *
3957397 TTCAAATGGTCACAAAATC-TGTACACTTCGAGTTTTTAGCTGAGTTTTGTTGTGCATGCCAACA
324 TTCAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTGTTATGCATGACAAAA
*
3957461 AAAATACAAAGATCACGGCTAACAAGTTTGGGTCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
389 AAAATACAAAGATCACGGCTAACAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAAT
* * * *
3957526 CCTGAACCGCAAAAA-TTTTCAAAAATTGTGAAAAATAGAAAATGAGTCGTCTTGCCATGGAACT
453 CCCGAACCGCAAAAAGTTTT-AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
3957590 TCACGTGAATGCTTAAGGGACCATCGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
517 TCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCAGAAAAATGGCATTGGCACGCAA
*
3957655 AAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCTCCCATCTCT
582 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCTCCCATCTCT
* * ** *
3957720 CTGGCCGTCGTAGTTACCGTCTGCCCGCCGCCCGCCAGCTCGTTTTGTCGGTTGGCCTAGGCATA
647 CTGGCCGACGTAGTT--CGCCTGCCCGCCGCCCGCCAGCTCGTTTCATCAGTTGGCCTAGGCATA
* * * *
3957785 CGGAGTTCTTTCCCAGTCTACGATCGCATCGAACCGAGGGTTGCGACAGTAAGATCGACAGCACG
710 CGGAGTTCATTCCCAGTCTAAGATCGCACCGAACCGAGGGTTGCGACAGCAAGATCGACAGCACG
* ** * *
3957850 TAGAGGGGGACCCGATTGATCCCCGACTTGCGCATCCCACCCCTCTAGTCGACTGAGCGCCCACA
775 CAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCCACCCCTCTAGCCGACTGAGCGCCCACA
** * * *
3957915 CGCTCATTTTTTGGGTTGACTTAGGCGTACGGAGTTCATTCGCAGTCTAAGCATACGGAG
840 CGCTCATTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCGCAGTCTAAGCAGACGGAG
* * *** *
3957975 TTCATTCCCAGTCTGAGATCGGACCGGACCGAGGGTTACAAG-AGCACATGCTGGGCTCGGGCAT
1 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT-GTGGTAGCACATGCTAGGCTCGGGCAT
* * ** * **
3958039 GTGCTGGTGCCACATTTTTCTTCTTCGGGGCACCATCGCCAGAGCATCCCAAAGAACCTGACCGA
65 GTGCTGGTGTCATATTTTTCTTCGCCAGGGCACCATCGCCAGAGCATCCCGGAGAACCTGACCGA
* * * *
3958104 CGGCACTAGGGTTCCGACGATCGGGGGGGCCGGGGAGGTTTGCGCACATGATGTACGATGGGTGC
130 CGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGC
*
3958169 TAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
194 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * *
3958234 AGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAGGTGTCTGAAATCGAGACACTT
259 AGAGCATTTGAGATTTTACAGGTTTGCT-GCAGTAG-CATTAAAGTGTCTGAAATGGGGACACTT
3958299 TTTTCAAATGGTCACAAAATCTTGTAC
322 TTTTCAAATGGTCACAAAATCTTGTAC
3958326 TTTTGGGTCC
Statistics
Matches: 1099, Mismatches: 136, Indels: 33
0.87 0.11 0.03
Matches are distributed among these distances:
899 107 0.10
900 234 0.21
901 171 0.16
902 376 0.34
903 153 0.14
904 53 0.05
905 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGTAGCACATGCTAGGCTCGGGCATG
TGCTGGTGTCATATTTTTCTTCGCCAGGGCACCATCGCCAGAGCATCCCGGAGAACCTGACCGAC
GGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCAGTAGCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTGTTATGCATGACAAAAAA
AATACAAAGATCACGGCTAACAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCC
GAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCAGAAAAATGGCATTGGCACGCAAAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCTCCCATCTCTCTGG
CCGACGTAGTTCGCCTGCCCGCCGCCCGCCAGCTCGTTTCATCAGTTGGCCTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCGCACCGAACCGAGGGTTGCGACAGCAAGATCGACAGCACGCAGAGG
GGGACCCGACCGATCCCCGACTTACGCATCCCACCCCTCTAGCCGACTGAGCGCCCACACGCTCA
TTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCGCAGTCTAAGCAGACGGAG
Found at i:3959689 original size:26 final size:26
Alignment explanation
Indices: 3959653--3959705 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3959643 GTTGACTTAG
3959653 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3959679 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3959705 G
1 G
3959706 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3960796 original size:902 final size:897
Alignment explanation
Indices: 3958780--3960792 Score: 2493
Period size: 902 Copynumber: 2.2 Consensus size: 897
3958770 TCATGCATTT
** * ** * *
3958780 GGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCTACAGCATATGCTGGGCACGGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGG
** * *
3958845 CATGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGC-CAGAGAACCTG
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACTGA-AGAACCTG
* * * * * * * * * *
3958909 ACCGACGGTATTGGGGTTCTGATGATCGGGGGAGCCGAGGGGGGTGTACGCACGTGATGTACAAT
130 ACTGGCTGCATTGGGGTTCCGACGATC--GGG-G--G-GGGGGGTGTGCGCACATGATGTGCGAT
*
3958974 GGATGCTGGTACTTGGCCCTTATATTG----GCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
189 GGGTGCTGGTACTTGGCCCTTATATTGCATTGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
3959035 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TCGAAA
254 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAAA
** * * * *
3959099 TAAGGACACTTTTTTCATATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTT
318 TGGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
3959164 GTGCACGCCAACAAAGATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACGCCTTCCGAAAA
383 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCGAAAA
* * * *
3959229 AATTTTAAAAAATCCTGAACCACAAAAAGTTTGGAAAAT-TTTAAACAAAAGAAAACGAGTCGTC
448 AATTTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATCGTGAAA-AATAGAAAACGAGTCGTC
* * *
3959293 TTGCCATGAAACTTCATGTGAAGGCTTAAGGCACCATGGTATGAATTTACAAGCCATAAAAATGG
512 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * *
3959358 CATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGGCTTG
577 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
3959423 CGCATCCCGTCTCTCTGGCTGACGTAATGCCCGCCCGTCCGCCCGCCCGCTCGTTTCATCAGTTG
642 CGCATCCCGTCTCTCTGGCCGACGT-A-G--TGCCCG-CCG-CCGCCCGCTCGTTTCATCGGTTG
* * * * * * *
3959488 GGTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGAACCGGACCAAGGGTTGCAGCAGCGGGA
701 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGA
* * *
3959553 TCGGTAGCACGCAGAGGGGAACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCGGCT
766 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
3959618 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
831 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
*
3959683 AT
896 AC
* * * * *
3959685 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCTGCACATGCTGGGCTAGGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGG
** *** ** * *
3959750 CATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCA--AAAATCGGAGCATTGCCGGAGAACCTGA
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACTGAAGAACCTGA
* * * *
3959813 CCGG-TGGCATTAGGGTTCCGACGATCGGGGGGGTCGGGGGGGAGTGCACACATGATGTGCGATG
131 CTGGCT-GCATTGGGGTTCCGACGATC---GGGG--GGGGGGGTGTGCGCACATGATGTGCGATG
* * ** *
3959877 GGTGCTGGCACTTGGCCCTTATA-T---TTGCCCCCTATCCCTCATAAAACCTATAGAGCTCACA
190 GGTGCTGGTACTTGGCCCTTATATTGCATTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
3959938 CCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
255 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
* * *
3960003 TGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGT
320 GGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
3960068 GCATGCCAAAAAAAATACAAGGATGACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
385 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAA
** * ** * * * *
3960133 TTTTAAAAAATCCTGAACCGTAGAAAGTTTCAAAAATCATGAAAAATAGAAGATGAGTCATCTTG
450 TTTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
3960198 CCATGAAACTTCACGTGAAGGCTTAAGGGTCCATTGTATGAATTTACAAGCCATAAAAATGGCAT
515 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
3960263 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATACACGGCTTACGC
580 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
3960328 ATCCGGTCTCTCTGGCCGACGTAGTGCCCG-C-CCGCCCGCTCGTTTCATCTGTTGGCTTAGGCA
645 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCA
* * *
3960391 TACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCA
710 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* * * *
3960456 CACAGAGGGGGACCCCG-CCGATCCCCGGCTTACGCATCCCGACCCTTTGGCCGGCT-AGGCGCC
775 CGCAGAGGGGGA-CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA-GCGCC
** * *
3960519 CGCACGCTCGTTAT-GTGGGTTGACTTAGGCATATAGAGATCATTCCCAGTCTAAGCAAAC
838 CGCACGCTCGTT-TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * * *
3960579 AGAGTTCATTCCCAGTCTAATATCAGACCGGATCGAGGGTTACGACAGCTCATGCTGGGCTCGGG
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGG
* * * ** *
3960644 CTTGTCCTGGTACCATATTTTTCTTCGTCGGGGCACCATCGTCGGATCATCACTGAAGAACCTGA
66 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACTGAAGAACCTGA
* *
3960709 CTGGCTGCATTGGGGTTCC-AGCGATC-GAGGGGGGGGTGTGCGCACATGATGTGCAATGGGTGC
131 CTGGCTGCATTGGGGTTCCGA-CGATCGGGGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
3960772 TGGTTCTTGGCCCTTATATTG
195 TGGTACTTGGCCCTTATATTG
3960793 GCCCACTATC
Statistics
Matches: 959, Mismatches: 133, Indels: 45
0.84 0.12 0.04
Matches are distributed among these distances:
890 47 0.05
891 1 0.00
892 2 0.00
893 1 0.00
894 272 0.28
895 6 0.01
896 41 0.04
897 1 0.00
898 5 0.01
900 1 0.00
901 2 0.00
902 441 0.46
903 48 0.05
904 5 0.01
905 86 0.09
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (897 bp):
GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGG
CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACTGAAGAACCTGA
CTGGCTGCATTGGGGTTCCGACGATCGGGGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGCATTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
CTTCTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAA
AAAATCCTGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGACGTAGTGCCCGCCGCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
Found at i:3961581 original size:184 final size:184
Alignment explanation
Indices: 3961226--3961627 Score: 522
Period size: 184 Copynumber: 2.2 Consensus size: 184
3961216 GTTGGCTTAG
* ** * *
3961226 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGTGGTAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCAAGGGTTGCGGCAGCAGGATCGGCA
* * * * * * *
3961291 GCACGCAGAGGGGGACCCGATCGATCCCCAGTTACACATCTTGATCTTCTAACTGGCTGAGCGCC
66 GCACGCAGAGGGAGACCCGACCGATCCCCAGTTACACATCCTGACCCTCTAACCGACTGAGCGCC
* * *
3961356 TGCACACTCGTCTCGTGTGTTGACTTAGGTAAACGGAGTTCATTCCCAGTCTAA
131 CGCACACTCGTCTCGTGGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTCTAA
* * *
3961410 GCATATGGAGTTCATTGCCAGTCTAAGATTGGA-TCAGACCAAGGGTTGCGGCAGGAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACT-AGACCAAGGGTTGCGGCAGCAGGATCGGC
* * * * **
3961474 AGCACGCAGAGGGAGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCG
65 AGCACGCAGAGGGAGACCCGACCGATCCCCAG-TTACACATCCTGACCCTCTAACCGACTGAGCG
* *
3961539 CCCGCACGCTCGT-TCCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAA
129 CCCGCACACTCGTCT-CGTGGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTCTAA
3961594 GCATACGGAGTTCATTCCCAGTCTAAGATTGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGAC
3961628 CGGACTGAGG
Statistics
Matches: 186, Mismatches: 28, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
183 1 0.01
184 134 0.72
185 51 0.27
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCAAGGGTTGCGGCAGCAGGATCGGCA
GCACGCAGAGGGAGACCCGACCGATCCCCAGTTACACATCCTGACCCTCTAACCGACTGAGCGCC
CGCACACTCGTCTCGTGGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTCTAA
Found at i:3961597 original size:25 final size:26
Alignment explanation
Indices: 3961569--3961620 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3961559 GTTGACTTAG
3961569 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3961594 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3961620 G
1 G
3961621 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3962512 original size:26 final size:26
Alignment explanation
Indices: 3962476--3962525 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
3962466 GACTTAGGCA
3962476 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGGAGTTCATTCCCAGTCTAAGCT
3962502 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
3962526 ATCAGACTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:3963411 original size:26 final size:26
Alignment explanation
Indices: 3963375--3963427 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3963365 GTTGACTTAG
*
3963375 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
3963401 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
3963427 G
1 G
3963428 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:3963566 original size:902 final size:899
Alignment explanation
Indices: 3961418--3964162 Score: 3964
Period size: 894 Copynumber: 3.1 Consensus size: 899
3961408 AAGCATATGG
* ** * *
3961418 AGTTCATTGCCAGTCTAAGATTGGATCAGACCAAGGGTTGCGGCAGGAGGATCGGCAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG
* * * * * * **
3961483 AGGGAGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGC
66 AGGGGGACCCGATCGATCCCCAGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTACACGC
* *
3961548 TCGTTCCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
131 TTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * *
3961612 CAGTCTAAGATTGGACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTG
196 CAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * * * * * *
3961677 CGGCATTTTTCTTTG-CCGAGGCAGCATCACCGGAGCATCACCGGAAAACCTGAC-AGGCGAAAT
261 CCGCATTTTTCTTCGTCAG-GGCACCATCGCTGGAGCATCGCCGGAGAACCTGACTA-GCGACAT
* *
3961740 TAGGGTTCCGACGATCGGGGGGTCCGGGTGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTAC
324 TGGGGTTCCGACGATCGGGGGG-CCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
3961805 TTGACCCTTATATTCACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
387 TTGGCCCTTATATTGA-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * * * *
3961870 TTTGAGATTTTACAGGTTTGCTGCCACTAGCCAATAAAGTGTTTGAAATGGGGACACTTTTTTCA
451 TTTGAGATTTTACAGGTTTGGTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTTCA
*
3961935 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
516 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGGCATGCCAAAAAAAA
* ** * * *
3962000 AACAAGGATCACGTCTACCAAGTTTGGGGATAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCA
581 TACAAGGATCACGTCTATTAAGTTTGGGGCTAAAACCCCTTCTGAAAAAATTTTAAAAAATCCCA
* * **
3962065 AACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTCCCGTGAAACTTCGTG
646 AACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * *
3962130 TGAAGGCTTAAGAGACAATTGTATGAATTTTCAAGCCATAAAAATGGCATTGGCACGT-AGAAAT
711 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC-TCAGAAAT
* * * * *
3962194 ATGAAAGATGTGCCTAAAACCAACTACCACCCTATCCATCCACAGCTTGCGCATCCCTTCTCTCT
775 ATG-AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * ** *
3962259 CGCTGGCGTAGTGCCC-CCCGGCCCGTCCGCCCGCTTGTTTCGTCGATTGGCTTAGGCATACGA
839 GGCCGGCGTAGTGCCCGCCC--CCCG-CCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGA
* ** * *
3962322 AGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTATGGCAGTAGGATCGGCAGCACGTAG
1 AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG
* * *
3962387 AGGGGGACCCGGTCGATCCCCAGCTAGTGCATCCCGCCCCTCTGGCTGGCTGAGCGCCTACACGC
66 AGGGGGACCCGATCGATCCCCAGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTACACGC
*
3962452 TTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTTACGGAGTTCATTCC
131 TTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * * *
3962517 CAGTCTAAGATCAGACTGAACCGAGGGTTGCGGCAGCACTTGCTGGGCTCAGGCATGTGCTGGTG
196 CAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * * *
3962582 CCGCATTTTTCTTCGTCGGGGCGCCATCG-TCGGAGCATCGCCAGAGAACCTGA-TCGGTGGCAT
261 CCGCATTTTTCTTCGTCAGGGCACCATCGCT-GGAGCATCGCCGGAGAACCTGACT-AGCGACAT
*
3962645 TGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
324 TGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
3962710 GGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATT
389 GGCCCTTATATTGACCCC-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
3962775 TGAGATTTTACAGGTTTGGTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTCTTTCAAA
453 TGAGATTTTACAGGTTTGGTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTTCAAA
* *
3962840 TGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGGGCATGCCAACAAAAATA
518 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGGCATGCCAAAAAAAATA
* * * * *
3962905 CAAGGATCACGTCTATTAAGTATGGGGCCAAAACCCCTTTTGAAAAAATTGTAAAAAATCCCGAA
583 CAAGGATCACGTCTATTAAGTTTGGGGCTAAAACCCCTTCTGAAAAAATTTTAAAAAATCCCAAA
** * * *
3962970 CCGCAGAAAGTTTTGAAAATCTTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
648 CCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * *
3963035 AAGGCATAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCACTCTGAAATATG
713 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTCAGAAATATG
* *
3963100 AGGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCC
778 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * *
3963165 GGCGTGGTGCCCGCCCACCCGCCTGCCCACTCATTTCGTCGGTCGGCTTAGGCATATGG
843 GGCGTAGTGCCCGCCC-CCCGCC-GCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGA
* * * *
3963224 AGTTCATTCCCAGTCTAAGATCAGA-CTGGACTGAGGGTTGCGACAACAGGATCGGCAGCACGCA
1 AGTTCATTCCCAGTCTAAGATCAGATC-AGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
*
3963288 GAGGGGGACCCGATCGATCCCCAGCTTGTGCATCCCGCCCCTCTGGCCGGCTGGGCGCCTACACG
65 GAGGGGGACCCGATCGATCCCCAGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTACACG
3963353 CTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
130 CTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* *
3963418 CAAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGGACATGCTGGGCTCGGGCATGTGCTGGT
195 CCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * *
3963483 GCTGCATTTTTCTTCGTCAGGGCACCATCGCTGGAGCATCGTCGGAGAACCTGACTAACGACATG
260 GCCGCATTTTTCTTCGTCAGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACTAGCGACATT
* *
3963548 GGGGTTCCGGCGAT--------CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAGTTG
325 GGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * *
3963605 GCCCTTATATTGTTCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGTGCATTT
390 GCCCTTATATTG-ACCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
3963670 GAGATTTTACAGGTTTGGTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTTCAAAT
454 GAGATTTTACAGGTTTGGTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTTCAAAT
3963735 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGGCATGCCAAAAAAAATAC
519 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGGCATGCCAAAAAAAATAC
*
3963800 AAGGATCACGTCTATTAAGTTTGGGGCTAAAACCCCTTCTGAAAAAATTTTAAAAAATCCTAAAC
584 AAGGATCACGTCTATTAAGTTTGGGGCTAAAACCCCTTCTGAAAAAATTTTAAAAAATCCCAAAC
3963865 CATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
649 CATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
*
3963930 AGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCA-TGCAGAAATATG
714 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACT-CAGAAATATG
* * * * * *
3963994 AAGATTTTCCTAAACCAACCTACCACCCTATCGGTCAACGGCTTGGGCATCCCGTCTCTCTGGCC
778 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
*
3964059 GGCGTAGTGCCCG-CCCGCG-CGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGA
843 GGCGTAGTGCCCGCCCCCCGCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGA
* *
3964114 AGTTCATTCCCAGTCTAAGATCTCGA-CTGAACCGAGGGTTGCGGCAGCA
1 AGTTCATTCCCAGTCTAAGATC-AGATCAG-ACCGAGGGTTGCGGCAGCA
3964163 CATTCCGGGC
Statistics
Matches: 1643, Mismatches: 182, Indels: 45
0.88 0.10 0.02
Matches are distributed among these distances:
890 54 0.03
891 20 0.01
892 3 0.00
893 3 0.00
894 471 0.29
895 4 0.00
901 3 0.00
902 402 0.24
903 386 0.23
904 140 0.09
905 155 0.09
906 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (899 bp):
AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG
AGGGGGACCCGATCGATCCCCAGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTACACGC
TTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
CAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
CCGCATTTTTCTTCGTCAGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACTAGCGACATTG
GGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
CCCTTATATTGACCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAGGTTTGGTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTTCAAATGG
TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGGCATGCCAAAAAAAATACAA
GGATCACGTCTATTAAGTTTGGGGCTAAAACCCCTTCTGAAAAAATTTTAAAAAATCCCAAACCA
TAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTCAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
GTAGTGCCCGCCCCCCGCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGA
Found at i:3965021 original size:26 final size:26
Alignment explanation
Indices: 3964985--3965037 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3964975 GTTGACTTAG
3964985 GCATACAGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
* *
3965011 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
3965037 G
1 G
3965038 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:3966777 original size:26 final size:26
Alignment explanation
Indices: 3966741--3966793 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3966731 GTTGACTTAG
3966741 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3966767 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3966793 G
1 G
3966794 ATCAAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3969185 original size:26 final size:26
Alignment explanation
Indices: 3969129--3969217 Score: 119
Period size: 26 Copynumber: 3.5 Consensus size: 26
3969119 CGATCGGGGG
* *
3969129 TTCATTCCCTGTCTAAGC--ACAGAC
1 TTCATTCCCAGTCTAAGCATACGGAC
3969153 TTCATTCCCAGTCTAAGCATACGGAC
1 TTCATTCCCAGTCTAAGCATACGGAC
* * *
3969179 TTCATTCCTAGTCTAAGCATATGGAG
1 TTCATTCCCAGTCTAAGCATACGGAC
3969205 TTCATTCCCAGTC
1 TTCATTCCCAGTC
3969218 CAAGATCAGA
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
24 17 0.30
26 40 0.70
ACGTcount: A:0.25, C:0.29, G:0.15, T:0.31
Consensus pattern (26 bp):
TTCATTCCCAGTCTAAGCATACGGAC
Found at i:3970954 original size:26 final size:26
Alignment explanation
Indices: 3970918--3970970 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3970908 GTTGACTTAG
*
3970918 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3970944 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3970970 G
1 G
3970971 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3971816 original size:26 final size:26
Alignment explanation
Indices: 3971787--3971839 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3971777 GTTGACTTAG
*
3971787 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
3971813 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3971839 G
1 G
3971840 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3972270 original size:893 final size:884
Alignment explanation
Indices: 3970529--3974390 Score: 4702
Period size: 893 Copynumber: 4.3 Consensus size: 884
3970519 ACCTTTCTGA
* * *
3970529 AAAAATGGAAAACGAGTCGTCTTGCCATGCAACTTCATGTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
3970594 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
3970659 ACCCTATCGATCCATGGCTTGCGCATCCCGCCTTTCTGGCCCG-CGTAGTGCCCACCCGTCTGCC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CCGAC---GT----A---G--TGCC
*
3970723 CGCCCGCTTGCCCGCTCTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGAT
183 CG-CC-C--GCCCG----TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * *
3970788 CGGACCAAACTGACGGTTGC-GATAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCC
240 CGGACCGAACTGAGGGTTGCAG-TAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCC
* * ** * ** * **
3970852 CGACTTGCACATCATGCCCCTCTGGCCAACTGAGTGCCCGCACGCTCGTTTCGTATGTTGACTTA
304 CGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * *
3970917 GGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGA
369 GGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGA
* *
3970982 CCGAGGGTTGCA-GCAGCACATGCTGGGCTCGGGCATGTGCTAGTGTCGTATTTTTC-T--TC--
434 CCGAGGGTTG-AGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCATCGG
*
3971041 -G--T-CGGAGCATCACCAGAGAACCTGACC-AGCGGCATTGGGGTTCCGGCGATC------G--
498 GGCATCCGGAGCATCACCAGAGAACCTAACCGA-CGGCATTGGGGTTCCGGCGATCGGGGGGGCC
* * *
3971093 GGGGGGTGTGCGTACATGATGTGCGATGGATGTTGGTACTTGGCCCTTATATTGGCCCCCTATCC
562 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
3971158 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
627 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
3971223 GTAGCCATTAAAGTGT-TCGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
692 GTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
3971287 TGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTT
756 CGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTT
* *
3971352 TGGGCCAAAACTCTTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAGTCAT
819 GGGGCCAAAACTCTTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
3971417 G
884 G
* * *
3971418 AAAAATAGAGAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTCAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * * *
3971483 ATTTACAAGCCATAAAAATGGTATTGGCATGCTGAAATATGAAGATATGACTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
3971548 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTTT
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTTT
* * *
3971613 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-TCAAGGGTTGT
196 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACT-GAGGGTTGC
* * * * * * *
3971677 GGTAGTAGGATTGGCAGCACATACAGGGGGACCTGACCGATCCCCGGCTTGTGCATCCCGCCCCT
260 AGTAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * *
3971742 CTAACCGGCTGAGCGCCTGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
325 CTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA
* * * * *
3971807 GTCTAAGCATACAGAGTTCATTCTCAGTCTAAGATCAGACTGGACCGAGGGTTTAGGCAGCACAT
390 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGAGGCAGCACAT
* *
3971872 GCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGC
455 GCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGG---CAT--CCGGAGCATCAC
* *
3971937 CGGAGAACCTAACCGACAGCATTGGGGTTCCGGCGATCGGGGGGGGCCGGGGTGGTGTGCGCACA
515 CAGAGAACCTAACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGGCCGGGG-GGTGTGCGCACA
*
3972002 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCGAG
578 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
3972067 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTGA-AGGTTTGCTGCCTGTAGCCATTAAAGTG
643 AACTCACACCCCCTTAAAGAGCATTTGAGATTTT-ACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
3972131 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAA
707 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * *
3972196 TTATTTTTTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCAATACTCCTT
772 TT-TTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTT
* * * * **
3972261 T-CGAAAAAATTTTAAAAAATCTCGAGCTGTAAAAAGTTTCAAAAATTGTG
834 TCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
* *
3972311 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCGTTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * *
3972376 ATTTCCAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCTTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * * *
3972441 ACCTTATCGATCCACGGCTTCCGCATCCCGCCTCTCTAGCTGGCGTAGTACCCGCCTGCCTGCCC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-C--CC-GCCC
* * * * *
3972506 GCACATTTCGTTGGTTGTCTTAGGCAGACGGAGTTCATTCCTAGTCTAAGATCAGACCGAACTGA
192 G----TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGA
* ** * *
3972571 GGATTGCAGTAGCCA-GATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGTGCATC
253 GGGTTGCAGTAG-CAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
* * * * *
3972635 CCGCCCCTCTTGCCGGCTGAGCGCCCGCACGCTCGTATCGTGAGTTGACTTGGGCATACGAAATT
317 CCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTT
* * * * *
3972700 CATTCCCAGTCTGAGCATACGTAGTTCATTCCCAGCCTAAGATTGGA-TCAGACCGAGGGTTGCG
382 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-AGACCGAGGGTTGAG
* * * *
3972764 GCAGTACATGTTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCTAGGGCACTATCGTCG
446 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTC-T---T------C-ATCG--G
* * * * * * ** *
3972829 GACTATCGCCGGAACATTACC-GAAGAACTTAACCAACGACATTGGGGTTCCTACGATTGGGGGG
498 GGC-AT--CCGGAGCATCACCAG-AGAACCTAACCGACGGCATTGGGGTTCCGGCGATCGGGGGG
* * * * *
3972893 GCCAGGGAGGTGTGCGCAAATGATGTACGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCTT
559 GCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * * *
3972958 ATCACTCATCAAACCTCAAGAACTCACACCTCCTTAAAGAGCATTTGACATTTTATAGGTTTGCT
623 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
3973023 GCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACA
688 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
3973088 CTTTGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAACAAAA-ACAAGGATCACGTCTACCAAGT
753 CTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGT
* * * *
3973152 TTGGGGCTAAAAATCTTTCCAAAAAAATTTTAAAAATTCCCGAACCATAAAAAGTTTTGAAAATC
817 TTGGGGCCAAAACTCTTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG--TT-----TC
3973217 ATGAAAATCATG
875 A--AAAATCATG
* **
3973229 AAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAACGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
3973294 ATTTACAAGCCATAAAAATGGCACTGGCACACAGAAATATGAGGATGTGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * *
3973359 ACCCTACCGATCCACAGCTTGCGCATCCTGTCTCTTTGGCTGGCGTAGTGCCCGCTCGCCCGTCC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-C-CGCCCG---
* * *
3973424 ACTCGCTCGTTTCGTCTGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACC-AG
189 ---C-C-CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-
* * * * * * ** *
3973488 ACTGAGGGGTGCAGCAGCAGGATTGGTAGCACACAGAGGGGGACTCGATCGATCGTCGGTTTGCG
248 ACTGAGGGTTGCAGTAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* *
3973553 CATCCCGCCCCTCTAGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAA
313 CATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA
* **
3973618 AGTTCATTCCCAATCTAAGCATACGGAGTTCATTATCAGTCTAAGATCGGAAC-AGACCGAGGGT
378 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG-ACTAGACCGAGGGT
* * * *
3973682 TGCGGTAGCAGATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCA-CC--
442 TGAGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCATCCGG
*** * ** *
3973744 -G--TCGTTAGAGAACCTGACCGACGGCATTGGGGTTCTAGCGATCGGGGGGGCCGGGGGGTGTT
507 AGCATCACCAGAGAACCTAACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTG
* * *
3973806 CACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAGAC
572 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
3973871 CTTGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTTGCTGCCAGTAGCCATT
637 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTGCTGCCAGTAGCCATT
3973936 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
701 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* *
3974001 GCTGAATCTTTTTGTGCATGCCAACAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAC
766 GCTGAAT-TTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
** * * * * * *
3974066 TCCGTCCGAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGCTTCAAAAATCCTG
830 TCTTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
*
3974121 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
3974186 ATTTACAAGCCATAAAAATGGCATTGGCAGGCAGAAATAGGAAGATGTGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
3974251 ACCCTATCGATCCACGGCTTGTGCATCCTGTCTCTCTGGCCGACGCAGTGCCCGCCCGCCCGCTC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C-C-C
* * * *
3974316 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGT
192 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGT
3974381 TGCAGTAGCA
257 TGCAGTAGCA
3974391 CATGCTGGGC
Statistics
Matches: 2571, Mismatches: 310, Indels: 189
0.84 0.10 0.06
Matches are distributed among these distances:
868 2 0.00
869 258 0.10
870 2 0.00
872 2 0.00
873 5 0.00
875 2 0.00
876 2 0.00
877 6 0.00
879 1 0.00
880 1 0.00
882 1 0.00
883 43 0.02
884 72 0.03
886 2 0.00
888 9 0.00
889 156 0.06
890 2 0.00
892 176 0.07
893 454 0.18
894 10 0.00
896 2 0.00
897 5 0.00
899 106 0.04
900 145 0.06
901 317 0.12
902 3 0.00
905 3 0.00
908 5 0.00
909 64 0.02
910 5 0.00
911 220 0.09
912 52 0.02
914 2 0.00
916 3 0.00
918 168 0.07
919 2 0.00
920 1 0.00
921 6 0.00
922 251 0.10
923 1 0.00
924 1 0.00
925 1 0.00
926 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (884 bp):
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTTT
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGCA
GTAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
TAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAG
TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGAGGCAGCACATG
CTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCATCCGGAGCATCACCAGAGA
ACCTAACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTG
CATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCAAAAAAATT
TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
Found at i:3975262 original size:25 final size:26
Alignment explanation
Indices: 3975211--3975262 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3975201 GTTGGCTTAG
3975211 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3975237 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3975262 G
1 G
3975263 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3976570 original size:883 final size:880
Alignment explanation
Indices: 3974335--3976862 Score: 3390
Period size: 901 Copynumber: 2.8 Consensus size: 880
3974325 GTTGGCTTAG
* *
3974335 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGG
* *
3974400 CTTGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCAGGGTACCATCGCCAGAGGATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCC-GGGGACCATCGCC---GGA-------AGA
* * * *
3974465 ACCTGATCGGCAGCATTGGGGTTCCGATGATCGGGGG-GGCCGAGGGGTGTGCACACATGATGTG
120 ACCTGA-CCGCGGCATTGGGGTTCCGATGATCGGGGGCGG-GGA-GGGTGTGCGCACATGATGTG
* *
3974529 CGATGGGTGCTGGTACTTGGCCCTTATATTCACCCCCTATCCCTCATCAAACCTCGAGGACTCAC
182 CGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
3974594 AGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
247 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
3974659 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-CTTTTTTG
312 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTG
**
3974723 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCTGAAAAA
377 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCAAAAAA
* * * * * * * *
3974788 GTTGTAAAAAATCCCAAACCGTAAAAAGTTTCCAAAATCGTGAAATATAAAAAATGAGTCGTCTT
442 ATTTTAAAAAAT-CCTAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
3974853 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTATAAGCCATAAAAATGGCA
506 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
3974918 TTGGCATGCACAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCG
571 TTGGCA-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
3974983 CATCCCATCTCTTTGGCCGGCGTAGTGCCCGCCGCCCGCTCGCCCGCCCACTCGTTTTGTCGGTT
635 CATCCCATCTCTCTGGCCGACGTAGTG--C-CCG--C-CT-GCCCG----CTCGTTTCGTCGGTT
* * ** *
3975048 GGCTTAGGCATACGGAGTTC---CCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGTAGCAAG
689 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTACGGCAGCAAG
* * ** * * * * *
3975110 ATCGGTAGCACGTAGAGGGGGAGCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGC
754 ATCAGCAGCACACAGAGGGGGACCCGACCAATCCCTGGCTTGAGCATCCCGCCCCTCTGGCCGAC
* * *
3975175 TGAGCGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
819 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
** * *
3975237 GCATACGGAGTTCATT-CCAGTCTAAGATCGGACCAGACCAAGGGTTGCAGCAGCACATCCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGG
* * * *
3975301 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGATCCATCGTCAGAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGA-CCA---TC---G---C-CGGAAGA
** * ** * *
3975366 ACCTGACCTGCGATATTAGGGTTTTGACGATCGAGGTGGCCGGG-GGGTGTGCGCACATGATGTG
120 ACCTGACC-GCGGCATTGGGGTTCCGATGATCG-GG-GGCGGGGAGGGTGTGCGCACATGATGTG
* * *
3975430 CGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
182 CGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
3975495 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAGGTGTCAGAAAT
247 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
3975560 -GGGACACTATTTTCAAATGGTCACAAAGTCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTG
312 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTG
* * * *
3975624 TGCATGCCAAAAAAAATACAGGGATCACGTCTACAAAGTTTGGGGCCAAAAATCCTTCCAAAAAA
377 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCAAAAAA
* * *
3975689 ATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGACTCATCTT
442 ATTTTAAAAAATCCT-AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
3975754 GCCATGAAACTTCACGTGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
506 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
**
3975819 TTTCCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
571 TTGGCA-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
3975884 CATCCCATCTCTCTGGCCGACATAGTGCCCGCCTGCTCGCTCGTTTCATCGGTTGGCTTAGGCAA
635 CATCCCATCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * *
3975949 ACGGAGTTCATTCCCAGTCTAAGATTGAACTAGAGCAAGGGTTACGGCAGCAGGATCAGCAGCAC
700 ACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTACGGCAGCAAGATCAGCAGCAC
*
3976014 ACAGAGGGGGACCC-AGCCAATCCCCT-GCTTGAGCATCCCGCCCCTCTGGCCGACTGAGCGCCT
765 ACAGAGGGGGACCCGA-CCAAT-CCCTGGCTTGAGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
* * *
3976077 GCACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCTAGTCTAA
828 GCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * *
3976130 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGCTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGG
*
3976195 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCGGAA-AACCTGACCGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGG-ACCATCGCCGGAAGAACCTGACCG-
* * *
3976259 CGGCATTGGGGTTGCGATGATCGGGGGTCGGGGAGGGTGTGCGCTCATGATGTGTGATGGGTGCT
129 CGGCATTGGGGTTCCGATGATCGGGGG-CGGGGAGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
3976324 GGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAA
193 GGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
3976388 GAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTT
258 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * *
3976453 TTTCAAATGGTCACAAAATCTTGTACACTTTAATTTTTTAGCTAATTTTTTTTGGGCATGCCAAA
323 TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAA
*
3976518 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCAAAAAAATTTTCAAAAA
388 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCAAAAAAATTTTAAAAAA
*
3976583 TCCCTAACCGTAAAAAGTTTGAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
453 T-CCTAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * ** *
3976648 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTAACAAGCCACAAATTTGGCATTGGTAGCCAG
517 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAG-CAG
*
3976713 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
581 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTC
* *
3976778 TCTGGCCGGA-GTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTAGCTTAGGCATACGGAG
646 TCTGGCC-GACGTAGT----GCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
*
3976842 TTCATTCCCAGTCTAAAATCG
706 TTCATTCCCAGTCTAAGATCG
3976863 GACCGGACTG
Statistics
Matches: 1434, Mismatches: 157, Indels: 85
0.86 0.09 0.05
Matches are distributed among these distances:
881 2 0.00
882 100 0.07
883 390 0.27
884 8 0.01
885 1 0.00
887 59 0.04
888 1 0.00
890 32 0.02
891 2 0.00
892 1 0.00
893 152 0.11
894 85 0.06
895 3 0.00
896 1 0.00
898 3 0.00
899 1 0.00
900 58 0.04
901 506 0.35
902 18 0.01
903 3 0.00
904 3 0.00
907 1 0.00
908 2 0.00
910 1 0.00
911 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (880 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGACCATCGCCGGAAGAACCTGACCGCG
GCATTGGGGTTCCGATGATCGGGGGCGGGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
TAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGCAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGG
CCGACGTAGTGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
GTCTAAGATCGAACCAGACCAAGGGTTACGGCAGCAAGATCAGCAGCACACAGAGGGGGACCCGA
CCAATCCCTGGCTTGAGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGG
TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:3976955 original size:11 final size:11
Alignment explanation
Indices: 3976939--3976971 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
3976929 GTCGAGGCAC
3976939 CATCGCCGGAG
1 CATCGCCGGAG
3976950 CATCGCCGGAG
1 CATCGCCGGAG
*
3976961 CGTCGCCGGAG
1 CATCGCCGGAG
3976972 AACCTAACTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.15, C:0.36, G:0.39, T:0.09
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:3979072 original size:59 final size:59
Alignment explanation
Indices: 3978823--3979237 Score: 404
Period size: 59 Copynumber: 7.0 Consensus size: 59
3978813 TGTTCTTGTG
* * * *
3978823 AGGAAAATGGATTACTTTCAACTTTT-TCAATAAAATA-TTTTTTTG-AAATTTTA-TTT-
1 AGGAAAATTGA-TACTTTCAACTTTTCCCCA-AAAATATTTTTTTTGAAAATTTGATTTTA
* *
3978879 AGG-AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTCTGGAAATTTTGATTTTTCCA
1 AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT-TTGAAAATTTGA-TTTT--A
* * ** * *
3978941 AGGAAAATTGATACTTTCAAGTTTTCCCTAAAAATATTTTTTGGGGAAATTTAATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTGA-TTTTA
*
3979001 AGGAAAATTGATACGTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTT-ATTTTCAA
1 AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTGATTTT--A
* * *
3979061 AGG-AAATTGATACTTTTAACTTTTCCTCAAAAATCCCTTTTTTTTTTG-AAATTT-ATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCCCAAAAA----TATTTTTTTTGAAAATTTGA-TTTTA
* * * *
3979122 AGGAAAATGGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTCGAAATTTTGATTTTCA
1 AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTGATTTT-A
* * *
3979181 AGGAAGATTGATACTTTCAACTTTTCCCC-AAAATATTTTTTTTGGAACTTTGATTTT
1 AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTGATTTT
3979238 TATTTGAAAG
Statistics
Matches: 302, Mismatches: 35, Indels: 41
0.80 0.09 0.11
Matches are distributed among these distances:
54 20 0.07
55 13 0.04
56 5 0.02
57 13 0.04
58 20 0.07
59 77 0.25
60 51 0.17
61 4 0.01
62 49 0.16
63 50 0.17
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.45
Consensus pattern (59 bp):
AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTGATTTTA
Found at i:3979144 original size:121 final size:117
Alignment explanation
Indices: 3978835--3979239 Score: 473
Period size: 121 Copynumber: 3.4 Consensus size: 117
3978825 GAAAATGGAT
* * *
3978835 TACTTTCAACTTTT-TCAATAAA-ATATTTTTTTGAAATTT-TATTT-AGG-AAATTGATACTTT
1 TACTTTCAACTTTTCCCAA-AAATATTTTTTTTTGAAATTTATTTTTAAGGAAAATTGATACTTT
*
3978895 CAACTTTTCCCCAAAAATATTTTTTCTGGAAATTTTGATTTTTCCAAGGAAAATTGA
65 CAACTTTTCCCCAAAAATATTTTTT-TCGAAATTTTGA-TTTT-CAAGG-AAATTGA
* *** *
3978952 TACTTTCAAGTTTTCCCTAAAAATATTTTTTGGGGAAATTTAATTTTTAAGGAAAATTGATACGT
1 TACTTTCAACTTTTCCC-AAAAATATTTTTTTTTGAAATTT-ATTTTTAAGGAAAATTGATACTT
* *
3979017 TCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTT-ATTTTCAAAGGAAATTGA
64 TCAACTTTTCCCCAAAAATATTTTTTTCGAAATTTTGATTTTC-AAGGAAATTGA
* * *
3979071 TACTTTTAACTTTTCCTCAAAAATCCCTTTTTTTTTTGAAATTTATTTTTAAGGAAAATGGATAC
1 TACTTTCAACTTTTCC-CAAAAAT---ATTTTTTTTTGAAATTTATTTTTAAGGAAAATTGATAC
*
3979136 TTTCAACTTTTCCCTAAAAATA-TTTTTTCGAAATTTTGATTTTCAAGGAAGATTGA
62 TTTCAACTTTTCCCCAAAAATATTTTTTTCGAAATTTTGATTTTCAAGGAA-ATTGA
* * *
3979192 TACTTTCAACTTTTCCCCAAAATATTTTTTTTGGAACTTTGATTTTTA
1 TACTTTCAACTTTTCCCAAAAATATTTTTTTTTGAAATTT-ATTTTTA
3979240 TTTGAAAGGA
Statistics
Matches: 247, Mismatches: 26, Indels: 29
0.82 0.09 0.10
Matches are distributed among these distances:
117 27 0.11
118 11 0.04
119 43 0.17
120 34 0.14
121 71 0.29
122 24 0.10
123 37 0.15
ACGTcount: A:0.32, C:0.13, G:0.09, T:0.46
Consensus pattern (117 bp):
TACTTTCAACTTTTCCCAAAAATATTTTTTTTTGAAATTTATTTTTAAGGAAAATTGATACTTTC
AACTTTTCCCCAAAAATATTTTTTTCGAAATTTTGATTTTCAAGGAAATTGA
Found at i:3979287 original size:28 final size:28
Alignment explanation
Indices: 3979244--3979300 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 28
3979234 TTTTTATTTG
3979244 AAAGGAAAATAGAATAATAAA-AAAATAA
1 AAAGGAAAATAGAATAA-AAATAAAATAA
3979272 AAAGTGAAAATA-AATAAAAATAAAATAA
1 AAAG-GAAAATAGAATAAAAATAAAATAA
3979300 A
1 A
3979301 GAAAAGTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
27 3 0.11
28 17 0.63
29 7 0.26
ACGTcount: A:0.75, C:0.00, G:0.09, T:0.16
Consensus pattern (28 bp):
AAAGGAAAATAGAATAAAAATAAAATAA
Found at i:3979324 original size:32 final size:31
Alignment explanation
Indices: 3979249--3979334 Score: 93
Period size: 32 Copynumber: 2.7 Consensus size: 31
3979239 ATTTGAAAGG
* *
3979249 AAAATAGAATAATAAAA-AAATAAAAAGTGAAAA
1 AAAATA-AA-AATAAAATAAA-GAAAAGTAAAAA
*
3979282 TAAATAAAAATAAAATAAAGAAAAGTAAAACA
1 AAAATAAAAATAAAATAAAGAAAAGTAAAA-A
*
3979314 AAAATAAAAATAAGATAAAGA
1 AAAATAAAAATAAAATAAAGA
3979335 TAAAAAATAT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
31 16 0.35
32 25 0.54
33 5 0.11
ACGTcount: A:0.76, C:0.01, G:0.08, T:0.15
Consensus pattern (31 bp):
AAAATAAAAATAAAATAAAGAAAAGTAAAAA
Found at i:3979348 original size:27 final size:27
Alignment explanation
Indices: 3979287--3979339 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
3979277 GAAAATAAAT
3979287 AAAAAT-AAAATAAAGAAAAGTAAAAC
1 AAAAATAAAAATAAAGAAAAGTAAAAC
3979313 AAAAATAAAAAT-AAGATAAAGATAAAA
1 AAAAATAAAAATAAAGA-AAAG-TAAAA
3979340 AATATTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 10 0.42
27 9 0.38
28 5 0.21
ACGTcount: A:0.77, C:0.02, G:0.08, T:0.13
Consensus pattern (27 bp):
AAAAATAAAAATAAAGAAAAGTAAAAC
Found at i:3979403 original size:21 final size:21
Alignment explanation
Indices: 3979366--3979410 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
3979356 TAATGCTAAT
3979366 AAATATAAAAAACAAATAAAA
1 AAATATAAAAAACAAATAAAA
*
3979387 AAATA-AAACAAATAAATAAAA
1 AAATATAAA-AAACAAATAAAA
3979408 AAA
1 AAA
3979411 AAACCTGGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 3 0.14
21 19 0.86
ACGTcount: A:0.82, C:0.04, G:0.00, T:0.13
Consensus pattern (21 bp):
AAATATAAAAAACAAATAAAA
Found at i:3979411 original size:17 final size:17
Alignment explanation
Indices: 3979363--3979411 Score: 73
Period size: 17 Copynumber: 2.9 Consensus size: 17
3979353 ACCTAATGCT
*
3979363 AATAAATATAAAAAACA
1 AATAAATAAAAAAAACA
3979380 AATAAA-AAAATAAAACA
1 AATAAATAAAA-AAAACA
3979397 AATAAATAAAAAAAA
1 AATAAATAAAAAAAA
3979412 AACCTGGAGC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 3 0.10
17 22 0.76
18 4 0.14
ACGTcount: A:0.82, C:0.04, G:0.00, T:0.14
Consensus pattern (17 bp):
AATAAATAAAAAAAACA
Found at i:3979762 original size:20 final size:20
Alignment explanation
Indices: 3979734--3979775 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
3979724 GAAGATTCAT
*
3979734 CGGATTCTGGGTTTTGTCAC
1 CGGAATCTGGGTTTTGTCAC
*
3979754 CGGAATCTGGGTTTTTTCAC
1 CGGAATCTGGGTTTTGTCAC
3979774 CG
1 CG
3979776 AAAGATCATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.12, C:0.21, G:0.29, T:0.38
Consensus pattern (20 bp):
CGGAATCTGGGTTTTGTCAC
Found at i:3980287 original size:21 final size:22
Alignment explanation
Indices: 3980251--3980292 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
3980241 AATTAGAGAA
*
3980251 GATAATAAAAAAAATATTATAG
1 GATAATAAAAAAAATAATATAG
*
3980273 GATAA-AAAAATAATAATATA
1 GATAATAAAAAAAATAATATA
3980293 TAATTAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (22 bp):
GATAATAAAAAAAATAATATAG
Found at i:3980322 original size:22 final size:22
Alignment explanation
Indices: 3980274--3980326 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
3980264 ATATTATAGG
* * * *
3980274 ATAAAAAAATAATAATATATAA
1 ATAAATAAATAAAAATACAAAA
*
3980296 TTAAATAAATAAAAATACAAAA
1 ATAAATAAATAAAAATACAAAA
3980318 ATAAATAAA
1 ATAAATAAA
3980327 ACAAAAAATA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.25
Consensus pattern (22 bp):
ATAAATAAATAAAAATACAAAA
Found at i:3980332 original size:15 final size:15
Alignment explanation
Indices: 3980302--3980342 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
3980292 ATAATTAAAT
*
3980302 AAATAAA-AATACAA
1 AAATAAATAAAACAA
3980316 AAATAAATAAAACAA
1 AAATAAATAAAACAA
3980331 AAA-ATAATAAAA
1 AAATA-AATAAAA
3980343 ATATATATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 8 0.33
15 16 0.67
ACGTcount: A:0.80, C:0.05, G:0.00, T:0.15
Consensus pattern (15 bp):
AAATAAATAAAACAA
Found at i:3980359 original size:52 final size:53
Alignment explanation
Indices: 3980276--3980376 Score: 127
Period size: 52 Copynumber: 1.9 Consensus size: 53
3980266 ATTATAGGAT
*
3980276 AAAAAAATAATAATATATAATTAAATAAATAA-AAATACAAAAATAAATAAAACA
1 AAAAAAATAAAAATATATAATT-AATAAATAATAAATA-AAAAATAAATAAAACA
* *
3980330 AAAAATAATAAAAATATAT-ATT-ATTAATAATAAATAAATAATAAATA
1 AAAAA-AATAAAAATATATAATTAATAAATAATAAATAAAAAATAAATA
3980377 CATAGGATAT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
52 17 0.40
53 5 0.12
54 8 0.19
55 12 0.29
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (53 bp):
AAAAAAATAAAAATATATAATTAATAAATAATAAATAAAAAATAAATAAAACA
Found at i:3980414 original size:6 final size:6
Alignment explanation
Indices: 3980391--3980425 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
3980381 GGATATACAT
3980391 AAAATA TAAAAT- AAAATA AAAATA AAAATA AAAAT
1 AAAATA -AAAATA AAAATA AAAATA AAAATA AAAAT
3980426 GACAAAGATA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.19
6 17 0.63
7 5 0.19
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
AAAATA
Found at i:3980597 original size:16 final size:15
Alignment explanation
Indices: 3980578--3980607 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
3980568 CTCAACTCAA
3980578 TGTTTTTATTTTTTTT
1 TGTTTTT-TTTTTTTT
3980594 TGTTTTTTTTTTTT
1 TGTTTTTTTTTTTT
3980608 ACCAAAGCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.03, C:0.00, G:0.07, T:0.90
Consensus pattern (15 bp):
TGTTTTTTTTTTTTT
Found at i:3980694 original size:8 final size:8
Alignment explanation
Indices: 3980681--3980718 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
3980671 AGAGGTAACT
3980681 TTTTTTTA
1 TTTTTTTA
3980689 TTTTTTTA
1 TTTTTTTA
*
3980697 CTTTTTTTG
1 -TTTTTTTA
3980706 TTTTTTT-
1 TTTTTTTA
3980713 TTTTTT
1 TTTTTT
3980719 AAATTGATCA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
7 6 0.21
8 15 0.54
9 7 0.25
ACGTcount: A:0.05, C:0.03, G:0.03, T:0.89
Consensus pattern (8 bp):
TTTTTTTA
Found at i:3980701 original size:18 final size:18
Alignment explanation
Indices: 3980678--3980713 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
3980668 AATAGAGGTA
3980678 ACTTTTTTT-TATTTTTTT
1 ACTTTTTTTGT-TTTTTTT
3980696 ACTTTTTTTGTTTTTTTT
1 ACTTTTTTTGTTTTTTTT
3980714 TTTTTAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 16 0.94
19 1 0.06
ACGTcount: A:0.08, C:0.06, G:0.03, T:0.83
Consensus pattern (18 bp):
ACTTTTTTTGTTTTTTTT
Done.