Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 29 of 129
Found at i:3980802 original size:1 final size:1
Alignment explanation
Indices: 3980796--3980837 Score: 57
Period size: 1 Copynumber: 42.0 Consensus size: 1
3980786 ATAAAGGTAA
* * *
3980796 TTTTTTTTTGTTTTTTTTTTGTTTTTTTGTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
3980838 AAATGATCAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
1 35 1.00
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (1 bp):
T
Found at i:3980812 original size:11 final size:11
Alignment explanation
Indices: 3980796--3980837 Score: 68
Period size: 11 Copynumber: 3.8 Consensus size: 11
3980786 ATAAAGGTAA
3980796 TTTTTTTTTGT
1 TTTTTTTTTGT
3980807 TTTTTTTTTGT
1 TTTTTTTTTGT
3980818 TTTTTTGTTT-T
1 TTTTTT-TTTGT
3980829 TTTTTTTTT
1 TTTTTTTTT
3980838 AAATGATCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
10 3 0.10
11 24 0.80
12 3 0.10
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (11 bp):
TTTTTTTTTGT
Found at i:3980822 original size:19 final size:19
Alignment explanation
Indices: 3980798--3980834 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
3980788 AAAGGTAATT
3980798 TTTTTTTGTTTTTTTTTTG
1 TTTTTTTGTTTTTTTTTTG
3980817 TTTTTTTGTTTTTTTTTT
1 TTTTTTTGTTTTTTTTTT
3980835 TTTAAATGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (19 bp):
TTTTTTTGTTTTTTTTTTG
Found at i:3980885 original size:118 final size:117
Alignment explanation
Indices: 3980580--3980931 Score: 477
Period size: 118 Copynumber: 3.1 Consensus size: 117
3980570 CAACTCAATG
* * * * *
3980580 TTTTTA-TTTTTTT-TTGTTTTTTTTTT---TT-ACCAAAGCTCCTTTAAACAAAGGCTCAACGA
1 TTTTTACTTTTTTTGTTTTTTTTTTTTTAAATTGATCAAAGCTCCTCTAAGCAAAGGCTCAATGA
*
3980639 CTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAGGTAACTTTTTTT-TATT
66 CTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAGGTAA-TTTTTTTGTTTT
* * *
3980691 TTTTTACTTTTTTTGTTTTTTTTTTTTTAAATTGATCAGAGCTCCTCTAAGCAGAGGTTCAATGA
1 TTTTTACTTTTTTTGTTTTTTTTTTTTTAAATTGATCAAAGCTCCTCTAAGCAAAGGCTCAATGA
* *
3980756 CTTTGAGAAACATAAACAAAGCTCCTCTAAATAAAGGTAATTTTTTTTTGTTTT
66 CTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAGGTAA--TTTTTTTGTTTT
**
3980810 TTTTTTGTTTTTTTGTTTTTTTTTTTTTAAA-TGATCAAAGCTCCTCTAAGCAAAGGCTCAATGA
1 TTTTTACTTTTTTTGTTTTTTTTTTTTTAAATTGATCAAAGCTCCTCTAAGCAAAGGCTCAATGA
* * *
3980874 CTTTGAGAAACATAAATGAAGCTCCTCTAAATAGAGGCAACTTTTTTGTTTT
66 CTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAGGTAATTTTTTTGTTTT
3980926 TTTTTA
1 TTTTTA
3980932 AAAGCTCCTC
Statistics
Matches: 210, Mismatches: 23, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
111 6 0.03
112 7 0.03
113 12 0.06
116 18 0.09
117 62 0.30
118 73 0.35
119 32 0.15
ACGTcount: A:0.28, C:0.13, G:0.12, T:0.47
Consensus pattern (117 bp):
TTTTTACTTTTTTTGTTTTTTTTTTTTTAAATTGATCAAAGCTCCTCTAAGCAAAGGCTCAATGA
CTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAGGTAATTTTTTTGTTTT
Found at i:3981024 original size:42 final size:42
Alignment explanation
Indices: 3980935--3981088 Score: 265
Period size: 42 Copynumber: 3.7 Consensus size: 42
3980925 TTTTTTAAAA
* * *
3980935 GCTCCTCTAAACAGAGGCTCGACGAC-TTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTAGAAAGTAAATT
3980976 GCTCCTCTAAACAGAGGCACCACGACTTTTAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTAGAAAGTAAATT
*
3981018 GCTCCTCTAAACAGAGGCACCACGACTTTTAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTAGAAAGTAAATT
3981060 GCTCCTCTAAACAGAGGCACCACGACTTT
1 GCTCCTCTAAACAGAGGCACCACGACTTT
3981089 CCCCTCTAAA
Statistics
Matches: 108, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
41 24 0.22
42 84 0.78
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTTAGAAAGTAAATT
Found at i:3981103 original size:28 final size:28
Alignment explanation
Indices: 3981063--3981116 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
3981053 GTAAATTGCT
* *
3981063 CCTCTAAACAGAGGCACCACGACTTTCC
1 CCTCTAAACAGAGGCAACACAACTTTCC
*
3981091 CCTCTAAATAGAGGCAACACAACTTT
1 CCTCTAAACAGAGGCAACACAACTTT
3981117 GGAAAGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.33, C:0.33, G:0.13, T:0.20
Consensus pattern (28 bp):
CCTCTAAACAGAGGCAACACAACTTTCC
Found at i:3981136 original size:41 final size:42
Alignment explanation
Indices: 3981091--3981175 Score: 145
Period size: 41 Copynumber: 2.0 Consensus size: 42
3981081 ACGACTTTCC
*
3981091 CCTCTAAATAGAGGCAACACAAC-TTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCAACACAACTTTTGGAAAGTAAATTGCT
*
3981132 CCTCTAAACAGAGGCACCACAACTTTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCAACACAACTTTTGGAAAGTAAATTGCT
3981174 CC
1 CC
3981176 CTGACAATCA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
41 21 0.51
42 20 0.49
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (42 bp):
CCTCTAAACAGAGGCAACACAACTTTTGGAAAGTAAATTGCT
Found at i:3981138 original size:69 final size:70
Alignment explanation
Indices: 3981021--3981157 Score: 213
Period size: 69 Copynumber: 2.0 Consensus size: 70
3981011 GTAAATTGCT
* * *
3981021 CCTCTAAACAGAGGCACCACGACTTTTAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
1 CCTCTAAACAGAGGCAACACAACTTTTAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACAAC
3981086 TTTCC
66 TTTCC
* **
3981091 CCTCTAAATAGAGGCAACACAAC-TTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACAAC
1 CCTCTAAACAGAGGCAACACAACTTTTAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACAAC
3981155 TTT
66 TTT
3981158 TGGAAAGTAA
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
69 41 0.67
70 20 0.33
ACGTcount: A:0.36, C:0.28, G:0.15, T:0.22
Consensus pattern (70 bp):
CCTCTAAACAGAGGCAACACAACTTTTAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACAAC
TTTCC
Found at i:3981481 original size:43 final size:42
Alignment explanation
Indices: 3981375--3981511 Score: 136
Period size: 43 Copynumber: 3.2 Consensus size: 42
3981365 TGAAAGATCC
** * *
3981375 TCATTTGAATTTTGGAGGCTCACATCCAAAAGTT-AAAGGTTCT
1 TCATTTGAATTTTGGA-ATTCACATCCAAAAATTCAAAGCTT-T
** *
3981418 T-ATTTGGCAAACTTGGAATTCATATCCAAAAA-TCTAAAGCTTT
1 TCATTT-G-AATTTTGGAATTCACATCCAAAAATTC-AAAGCTTT
3981461 TCATTTGAATTTTGGAAATTCACATCCAAAAATTCAAAGCTTT
1 TCATTTGAATTTTGG-AATTCACATCCAAAAATTCAAAGCTTT
3981504 TCATTTGA
1 TCATTTGA
3981512 GTTCAAAGGC
Statistics
Matches: 77, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
42 11 0.14
43 47 0.61
44 19 0.25
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.36
Consensus pattern (42 bp):
TCATTTGAATTTTGGAATTCACATCCAAAAATTCAAAGCTTT
Found at i:3981743 original size:22 final size:22
Alignment explanation
Indices: 3981695--3981753 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
3981685 GGTTTCACTC
3981695 CTCAAAGATTCTCATTTTGAAAT
1 CTCAAAGATTCTCA-TTTGAAAT
**
3981718 -TCAAAGATTCTCATTTGAGTT
1 CTCAAAGATTCTCATTTGAAAT
*
3981739 CTCAAAAATTCTCAT
1 CTCAAAGATTCTCAT
3981754 CAAAACATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.19
22 26 0.81
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.39
Consensus pattern (22 bp):
CTCAAAGATTCTCATTTGAAAT
Found at i:3982853 original size:18 final size:16
Alignment explanation
Indices: 3982819--3982851 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
3982809 TCAATTTGAA
3982819 TCTCTTTTTTTCATTT
1 TCTCTTTTTTTCATTT
3982835 TCTCATTTTTTTC-TTT
1 TCTC-TTTTTTTCATTT
3982851 T
1 T
3982852 TTTTCCTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (16 bp):
TCTCTTTTTTTCATTT
Found at i:3986968 original size:59 final size:58
Alignment explanation
Indices: 3986810--3987157 Score: 414
Period size: 59 Copynumber: 5.8 Consensus size: 58
3986800 TCTTGTGTAG
* *
3986810 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATACTTTTTTGGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAA-TTT-ATTTTCAA
* *
3986870 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTATTTTCAA
*
3986927 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTA-TTTCAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTGGAAATTTATTTTC-AA
* * * *
3986986 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTTTTTTTTGAAAATTTATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA--------TATTTTTTTGGAAATTTATTTTCA
3987051 A
58 A
* * **
3987052 GGAAAATGGATACTTTCAACTTTTCCCTAAAAATA-TTTTTCAGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAA-TTT-ATTTTCAA
*
3987111 GGAAGATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGGAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTGGAA
3987158 CTTTTGATTT
Statistics
Matches: 252, Mismatches: 20, Indels: 31
0.83 0.07 0.10
Matches are distributed among these distances:
57 49 0.19
58 10 0.04
59 98 0.39
60 35 0.14
61 8 0.03
66 48 0.19
67 4 0.02
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.44
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTATTTTCAA
Found at i:3987044 original size:66 final size:66
Alignment explanation
Indices: 3986962--3987085 Score: 205
Period size: 66 Copynumber: 1.9 Consensus size: 66
3986952 CCCAAAAATA
*
3986962 TTTTTTTTGAAAATTTATTTCAAAGGAAAATTGATACTTTCAACTTTT-CCTCAAAAATCCCTTT
1 TTTTTTTTGAAAATTTATTTCAAAGGAAAATGGATACTTTCAACTTTTCCCT-AAAAATCCCTTT
3987026 TT
65 TT
**
3987028 TTTTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCTAAAAAT
1 TTTTTTTTGAAAATTTATTTCAAAGGAAAATGGATACTTTCAACTTTTCCCTAAAAAT
3987086 ATTTTTCAGA
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
66 51 0.94
67 3 0.06
ACGTcount: A:0.33, C:0.13, G:0.07, T:0.47
Consensus pattern (66 bp):
TTTTTTTTGAAAATTTATTTCAAAGGAAAATGGATACTTTCAACTTTTCCCTAAAAATCCCTTTT
T
Found at i:3987070 original size:125 final size:125
Alignment explanation
Indices: 3986905--3987144 Score: 376
Period size: 125 Copynumber: 1.9 Consensus size: 125
3986895 CCTAAAAATA
* * **
3986905 TTTTTTGGAAATTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
1 TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATA-TTTTTCA
*
3986970 GAAAATTT-A-TTTCAAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTT
65 GAAAATTTGATTTTC-AAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATCCCTTTTTTT
*
3987030 TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCTAAAAATATTTTTCAG
1 TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATATTTTTCAG
* *
3987095 AAATTTTGATTTTCAAGGAAGATTGATACTTTCAACTTTTCCCCAAAAAT
66 AAAATTTGATTTTCAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAAT
3987145 ATTTTTTTTG
Statistics
Matches: 105, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
124 12 0.11
125 89 0.85
126 4 0.04
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (125 bp):
TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATATTTTTCAG
AAAATTTGATTTTCAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATCCCTTTTTTT
Found at i:3987210 original size:16 final size:15
Alignment explanation
Indices: 3987190--3987252 Score: 63
Period size: 16 Copynumber: 3.9 Consensus size: 15
3987180 AATAGAATAA
3987190 TAAAAAAAATAAAAG
1 TAAAAAAAATAAAAG
* *
3987205 TGAAAATAAATAAAAA
1 T-AAAAAAAATAAAAG
*
3987221 TAAAAATAAAGAAAAG
1 TAAAAA-AAATAAAAG
3987237 TAAAACAAAAATAAAA
1 T-AAA-AAAAATAAAA
3987253 ATAAGATAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
15 5 0.13
16 21 0.55
17 10 0.26
18 2 0.05
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (15 bp):
TAAAAAAAATAAAAG
Found at i:3987221 original size:6 final size:6
Alignment explanation
Indices: 3987185--3987270 Score: 54
Period size: 6 Copynumber: 14.3 Consensus size: 6
3987175 AAGAAAATAG
* *
3987185 AATAATA AA-AAA AATAAA AGTGAA AAT--A AATAAA AATAAA AATAAA
1 AATAA-A AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
* * * *
3987231 GAAAAGTAA AACAAA AATAAA AAT-AA GATAAA GATAAA AA
1 -AATA--AA AATAAA AATAAA AATAAA AATAAA AATAAA AA
3987271 ATATTAAATA
Statistics
Matches: 64, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
4 4 0.06
5 7 0.11
6 43 0.67
7 5 0.08
8 3 0.05
9 2 0.03
ACGTcount: A:0.77, C:0.01, G:0.07, T:0.15
Consensus pattern (6 bp):
AATAAA
Found at i:3987246 original size:27 final size:28
Alignment explanation
Indices: 3987216--3987269 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
3987206 GAAAATAAAT
3987216 AAAAATAAAAATAAAGA-AAAG-TAAAAC
1 AAAAATAAAAAT-AAGATAAAGATAAAAC
3987243 AAAAATAAAAATAAGATAAAGATAAAA
1 AAAAATAAAAATAAGATAAAGATAAAA
3987270 AATATTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 4 0.16
27 16 0.64
28 5 0.20
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.13
Consensus pattern (28 bp):
AAAAATAAAAATAAGATAAAGATAAAAC
Found at i:3987261 original size:11 final size:11
Alignment explanation
Indices: 3987194--3987269 Score: 59
Period size: 11 Copynumber: 6.9 Consensus size: 11
3987184 GAATAATAAA
3987194 AAAAATAAAAGT
1 AAAAATAAAA-T
*
3987206 GAAAAT-AAAT
1 AAAAATAAAAT
3987216 AAAAATAAAAAT
1 AAAAAT-AAAAT
* *
3987228 AAAGA-AAAGT
1 AAAAATAAAAT
3987238 AAAACA-AAAAT
1 AAAA-ATAAAAT
*
3987249 AAAAATAAGAT
1 AAAAATAAAAT
*
3987260 AAAGATAAAA
1 AAAAATAAAA
3987270 AATATTAAAT
Statistics
Matches: 51, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
10 14 0.27
11 24 0.47
12 13 0.25
ACGTcount: A:0.76, C:0.01, G:0.08, T:0.14
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:3987343 original size:12 final size:11
Alignment explanation
Indices: 3987207--3987346 Score: 57
Period size: 12 Copynumber: 11.7 Consensus size: 11
3987197 AATAAAAGTG
*
3987207 AAAATAAATAA
1 AAAAAAAATAA
3987218 AAATAAAAAT-A
1 AAA-AAAAATAA
* *
3987229 AAGAAAAGTAA
1 AAAAAAAATAA
*
3987240 AACAAAAATAA
1 AAAAAAAATAA
* *
3987251 AAATAAGATAA
1 AAAAAAAATAA
3987262 AGATAAAAAATATTA
1 A-A-AAAAAATA--A
**
3987277 AATAAAACCTAA
1 AA-AAAAAATAA
** *
3987289 TCTAATAAATATA
1 -AAAAAAAATA-A
*
3987302 AAAACAAATAA
1 AAAAAAAATAA
3987313 AATAAACAAATAA
1 AA-AAA-AAATAA
3987326 ATAAAAAAATTAA
1 A-AAAAAAA-TAA
3987339 AAAAAAAA
1 AAAAAAAA
3987347 CCTGGAGTGG
Statistics
Matches: 96, Mismatches: 21, Indels: 23
0.69 0.15 0.16
Matches are distributed among these distances:
10 5 0.05
11 28 0.29
12 31 0.32
13 21 0.22
14 9 0.09
15 2 0.02
ACGTcount: A:0.75, C:0.04, G:0.03, T:0.18
Consensus pattern (11 bp):
AAAAAAAATAA
Found at i:3987344 original size:13 final size:12
Alignment explanation
Indices: 3987295--3987346 Score: 50
Period size: 13 Copynumber: 4.2 Consensus size: 12
3987285 CTAATCTAAT
* *
3987295 AAATATAAAAAC
1 AAATAAAAAAAA
*
3987307 AAATAAAATAAAC
1 AAATAAAA-AAAA
3987320 AAATAAATAAAAA
1 AAATAAA-AAAAA
*
3987333 AATTAAAAAAAA
1 AAATAAAAAAAA
3987345 AA
1 AA
3987347 CCTGGAGTGG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
12 14 0.40
13 20 0.57
14 1 0.03
ACGTcount: A:0.81, C:0.04, G:0.00, T:0.15
Consensus pattern (12 bp):
AAATAAAAAAAA
Found at i:3987629 original size:20 final size:22
Alignment explanation
Indices: 3987593--3987634 Score: 70
Period size: 20 Copynumber: 2.0 Consensus size: 22
3987583 GACAGAAAGC
3987593 TCCTTTTCTCTCTCTCTCTTCT
1 TCCTTTTCTCTCTCTCTCTTCT
3987615 TCCTTTT-TC-CTCTCTCTTCT
1 TCCTTTTCTCTCTCTCTCTTCT
3987635 CTCTAAAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 11 0.55
21 2 0.10
22 7 0.35
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (22 bp):
TCCTTTTCTCTCTCTCTCTTCT
Found at i:3988200 original size:8 final size:8
Alignment explanation
Indices: 3988189--3988258 Score: 54
Period size: 8 Copynumber: 8.4 Consensus size: 8
3988179 ATATTATAGG
3988189 ATAAAAAA
1 ATAAAAAA
3988197 AT--AAAA
1 ATAAAAAA
3988203 ATAAAAATA
1 ATAAAAA-A
**
3988212 TATAATTAA
1 -ATAAAAAA
3988221 ATAAATAAAA
1 AT-AA-AAAA
*
3988231 ATAGAAAA
1 ATAAAAAA
3988239 ATAAATAAA
1 ATAAA-AAA
3988248 ATAAAAAA
1 ATAAAAAA
3988256 ATA
1 ATA
3988259 TATTATTAAT
Statistics
Matches: 49, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
6 6 0.12
8 21 0.43
9 13 0.27
10 9 0.18
ACGTcount: A:0.77, C:0.00, G:0.01, T:0.21
Consensus pattern (8 bp):
ATAAAAAA
Found at i:3988217 original size:45 final size:47
Alignment explanation
Indices: 3988191--3988283 Score: 118
Period size: 47 Copynumber: 2.0 Consensus size: 47
3988181 ATTATAGGAT
* *
3988191 AAAA-AAATAAAA-ATAAAAATATATAATTAAATAAATAAAAATAGA
1 AAAATAAATAAAATAAAAAAATATATAATTAAAAAAATAAAAATAGA
*
3988236 AAAATAAATAAAATAAAAAAATATATTATTAATAATAAATAATAAATA
1 AAAATAAATAAAATAAAAAAATATATAATTAA-AA-AAATAA-AAATA
3988284 CATAGGATAT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
45 4 0.10
46 8 0.20
47 16 0.40
48 1 0.03
49 6 0.15
50 5 0.12
ACGTcount: A:0.73, C:0.00, G:0.01, T:0.26
Consensus pattern (47 bp):
AAAATAAATAAAATAAAAAAATATATAATTAAAAAAATAAAAATAGA
Found at i:3988229 original size:22 final size:22
Alignment explanation
Indices: 3988201--3988283 Score: 76
Period size: 22 Copynumber: 3.5 Consensus size: 22
3988191 AAAAAAATAA
3988201 AAATAAAAATATATAATTAAAT
1 AAATAAAAATATATAATTAAAT
* * *
3988223 AAATAAAAATAGAAAAATAAAT
1 AAATAAAAATATATAATTAAAT
*
3988245 AAAATAAAAAAATATATTATTAATAAT
1 -AAAT--AAAAATATATAATT-A-AAT
3988272 AAATAATAAATA
1 AAATAA-AAATA
3988284 CATAGGATAT
Statistics
Matches: 48, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
22 19 0.40
23 4 0.08
24 2 0.04
25 15 0.31
26 5 0.10
27 3 0.06
ACGTcount: A:0.71, C:0.00, G:0.01, T:0.28
Consensus pattern (22 bp):
AAATAAAAATATATAATTAAAT
Found at i:3988250 original size:17 final size:18
Alignment explanation
Indices: 3988189--3988258 Score: 70
Period size: 17 Copynumber: 3.6 Consensus size: 18
3988179 ATATTATAGG
3988189 ATAAAAAAATAAAAATAAAA
1 ATAAAAAAAT--AAATAAAA
3988209 ATATATAATTAAATAAATAAAA
1 ATA-A-AA--AAATAAATAAAA
*
3988231 ATAGAAAAATAAAT-AAA
1 ATAAAAAAATAAATAAAA
3988248 ATAAAAAAATA
1 ATAAAAAAATA
3988259 TATTATTAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 11
0.77 0.04 0.19
Matches are distributed among these distances:
17 13 0.30
18 8 0.18
20 5 0.11
21 1 0.02
22 13 0.30
24 4 0.09
ACGTcount: A:0.77, C:0.00, G:0.01, T:0.21
Consensus pattern (18 bp):
ATAAAAAAATAAATAAAA
Found at i:3988699 original size:26 final size:26
Alignment explanation
Indices: 3988663--3988715 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3988653 GTTGACTTAG
3988663 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3988689 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3988715 G
1 G
3988716 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3992263 original size:25 final size:26
Alignment explanation
Indices: 3992233--3992282 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 26
3992223 GTTGGCTTAT
3992233 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3992258 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
3992283 GGATTGAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3992952 original size:748 final size:745
Alignment explanation
Indices: 3991512--3993006 Score: 2285
Period size: 748 Copynumber: 2.0 Consensus size: 745
3991502 GTTGGCTTAG
* *
3991512 GCATACGGACTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGACTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTGTGACAGCACATGCTGGG
* * * *
3991577 CTCGGGCATGTGCTGGTGCCGTAATTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGAAGA
66 CTCGGGCATGTGATGGTGCCGCAATTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGAAGA
* * * * * *
3991642 ACCTGACTGGCAGCATTGGGGTTCCGATGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCG
131 ACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTACGAACATGATGTGCG
* * * *
3991707 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTAGTACATAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* **
3991772 CCCCTTAAAGGGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTATTTGAAATAG
261 CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTAACAGTAGCCATTAAAGTATTTGAAATAG
*
3991837 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTA
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTGTTAGCTGAATTTTTTTGTA
3991902 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTCCGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTCCGAAAAAAT
* ** * * *
3991967 TTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
456 TTTAAAAAATCCCAAACCGCAAAAAGTTTCCAAAATCATGAAAAATAGAAAACAAGTCATCTTGC
* **
3992032 CATGAAAGTTCACGTGAAGGCTTAAGGGCCCATTGTATGAATTTACAAGCCATAAAAATGGCATT
521 CATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
3992097 GGCATGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
586 GGCA-GCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGACTTGCGCA
*
3992162 TCCCATCTCTATGGCTGGCATAGTGCCCGCCTGTCCGCCTGCCTGCCCACTCGTTTCATCGGTTG
650 TCCCATCTCTATGGCTGGCATAGTGCCCGCCCGTCCGCCTGCCTGCCCACTCGTTTCATCGGTTG
3992227 GCTTATGCATACGGAGTTCATCCCAGTCTAA
715 GCTTATGCATACGGAGTTCATCCCAGTCTAA
* * * *
3992258 GCATACGGAGTTCATTCCCAGTCTAGGATTGAACTGGACCGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGACTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTGTGACAGCACATGCTGGG
* * * * *
3992323 TTGGGGCATGTGATGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTTGGAGCATCGCCGGAA-
66 CTCGGGCATGTGATGGTGCCGCAATTTTCTTCATCGGGGCACCATCGTCGGAGCATCACC-GAAG
* * * *
3992387 AACTTGACCGACGGCATTGGGGTTTCGACGATTGGGGGGGCCGGGGTGGTGTACGAACATGATGT
130 AACCTGACCGACAGCATTGGGGTTCCGACGA-TCGGGGGGCCGGGG-GGTGTACGAACATGATGT
*
3992452 GCGATGGGTGCTATTACATAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTAGTACATAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
3992517 CACGCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTAACAGTAGCCATTAAAGTGTTTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTAACAGTAGCCATTAAAGTATTTGAAA
* *
3992582 TTGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTGTTAGCTGAATTTTTTT
323 TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTGTTAGCTGAATTTTTTT
* * * * *
3992647 GTGCATGCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAA
388 GTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTCCGAAAA
* ** *
3992712 AATTTTCAAAAATCCTGAACCGCAAAAAGTTTCCAGAATCATGAAAAATAGAAAACAAGTCATCT
453 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTCCAAAATCATGAAAAATAGAAAACAAGTCATCT
3992777 TGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * **
3992842 ATTGGCA-CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAATGGGTTG
583 ATTGGCAGCA-A-AAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGACTTG
* ** * *
3992906 CGCATCCCGTCTCTATGGCTGGTGTAGTGCCCGCCCG-CCTGCCTGCCTGTCCACTCGTTTCATT
646 CGCATCCCATCTCTATGGCTGGCATAGTGCCCGCCCGTCC-GCCTGCCTGCCCACTCGTTTCATC
3992970 GGTTGGCTTATGCATACGGAGTTCATCCCAGTCTAA
710 GGTTGGCTTATGCATACGGAGTTCATCCCAGTCTAA
3993006 G
1 G
3993007 ATCAGACCAG
Statistics
Matches: 674, Mismatches: 69, Indels: 10
0.90 0.09 0.01
Matches are distributed among these distances:
746 137 0.20
747 18 0.03
748 519 0.77
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (745 bp):
GCATACGGACTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTGTGACAGCACATGCTGGG
CTCGGGCATGTGATGGTGCCGCAATTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGAAGA
ACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTACGAACATGATGTGCG
ATGGGTGCTAGTACATAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTAACAGTAGCCATTAAAGTATTTGAAATAG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTGTTAGCTGAATTTTTTTGTA
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTCCGAAAAAAT
TTTAAAAAATCCCAAACCGCAAAAAGTTTCCAAAATCATGAAAAATAGAAAACAAGTCATCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCAGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGACTTGCGCAT
CCCATCTCTATGGCTGGCATAGTGCCCGCCCGTCCGCCTGCCTGCCCACTCGTTTCATCGGTTGG
CTTATGCATACGGAGTTCATCCCAGTCTAA
Found at i:3993178 original size:26 final size:26
Alignment explanation
Indices: 3993139--3993191 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3993129 GTTGACTTAG
3993139 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
* *
3993165 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
3993191 G
1 G
3993192 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:3995295 original size:876 final size:874
Alignment explanation
Indices: 3992258--3995812 Score: 4455
Period size: 876 Copynumber: 4.0 Consensus size: 874
3992248 CCCAGTCTAA
* * * ** *
3992258 GCATACGGAGTTCATTCCCAGTCTAGGATTGAACTGGACCGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * ** * * * ** *
3992323 TTGGGGCATGTGATGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTTGGAGCATCGCCGGAAA
66 CTCGGGCATGTGCTTGTGCCGCATTTTTCTTCGCCGGGGCACCATTGTCGAAGCATCATCGGAGA
* * * * * *
3992388 ACTTGACCGACGGCATTGGGGTTTCGACGATTGGGGGGGCCGGGGTGGTGTACGAACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGG-GGTGT-GGCACATGATGTG
** * * *
3992453 CGATGGGTGCTATTACATAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-GCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * ** *
3992518 ACGCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTAACAGTAGCCATTAAAGTGTTTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
3992583 TGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTGTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
3992648 TGCATGCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
3992713 ATTTTCAAAAATCCTGAACCGCAAAAAGTTTCCAGAATCATGAAAAATAGAAAACAAGTCATCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTT
*
3992778 GCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
3992843 TTGGCA--CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAATGGGTTG
583 TTGGCATGCA-A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTG
* * * * * * * * *
3992906 CGCATCCCGTCTCTATGGCTGGTGTAGTGCCCGCCCGCCTGCCTGCCTGTCCACTCGTTTCATTG
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCG-C--CC-GCCCGCCCGCTCATTTCATCG
* * * *
3992971 GTTGGCTTATGCATACGGAGTTCA-TCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGC
707 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTGCGGTAGC
* * ** * ** *
3993035 TGGATCGGCAGCACATAGAGGGGGACCCGATCGATCCTCGACTTGCACATCCTGCCCCTCTGGCC
772 AGCATCGGCAGCACGCAGAGGGGGACCCGACCGATCC-CGACTTGTGCATCCCGCCCCTCTGGCC
** * *
3993100 GGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
836 GACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAG
* *
3993139 GCATACGGAATTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTAGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG---ATCG-G---A----C---C-------AGACC-GA-
** * ** * *
3993204 CGAGAGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATAATTTTCTTCGTCGGGG
43 -G-G-GTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTTGTGCCGCATTTTTCTTCGCCGGGG
** * * * * * * *
3993269 CACCAACGCCGGAGCATCACCGGAGAACCTGACCGACAGCATTGGGGTTTCGGCGATCGGGGGGG
105 CACCATTGTCGAAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGG
* * * *
3993334 CC-GGGGGTGTACGCACATGATGTCCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTAT
170 CCGGGGGGTGT-GGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGC-CCTAT
* * *
3993398 CCCTCATCAAAACTCGAGAACTCACACCCTCTTAAAGAGAGCATTTGAGATTTTACAAGTTTGCT
233 CCCTCATCAAACCTCGAGAACTCACACCCCCTT-AA-AGAGCATTTGAGATTTTACAGGTTTGCT
* * *
3993463 GCCAGTAGCGATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATA
296 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
3993528 CTTCGAGTTTTTAGCTGAA-TTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCAACCAAG
361 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCCACCAAG
** *
3993592 TTTGCGGG-CAAAACTCCTTCCGAAAAAATTTTAAAAAATGTCGAACCGTAAAAAGTTTCAAAAA
426 TTTG-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
* *
3993656 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGCCCATTG
490 TCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
3993721 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCAC
555 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCAC
*
3993786 CTACCA-CCAGATCTATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCT-------
620 CTACCACCCA-ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGC
* * *
3993843 -TGCCTGCCCGTTCATTTCATCGGTT-GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAA
684 CCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAA
* * * *
3993906 ACCAGA-TCGAGGGTTGCGGCAGCAGCATCGGTAGCACGTAGAGGGGGACCCCG-CCGATCTTCG
749 ACCAGACT-GAGGGTTGCGGTAGCAGCATCGGCAGCACGCAGAGGGGGA-CCCGACCGATC--CC
* *
3993969 GA-TTGTGCATCCCGCCCCTCTGGTCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAG
810 GACTTGTGCATCCCGCCCCTCTGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAG
** *
3994033 GCATGTGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
3994098 CTCGGGCATGTG-TTGGTGTCGCATTTTTCTTCGCTGGGGCACCATTG-CCAGAGCATCTTCGGA
66 CTCGGGCATGTGCTT-GTGCCGCATTTTTCTTCGCCGGGGCACCATTGTCGA-AGCATCATCGGA
** *
3994161 GAACCTGACCGGTGGCATTGGGGTTCCGACGATCAGAGGGGCCGGGGGGGTGTGCGCACATGATG
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCC-GGGGGGTGTG-GCACATGATG
*
3994226 TGCGATGGGTGCTGGTACTTGGCCCTTATAATGGGCCCCTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGG-CCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
3994291 ACACCTCCTTAAAGAGCTTTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
3994356 ATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
3994420 TGTCCACGCCAAAAAAAATAAAAGGATCACGTCCACTAAGTTTGGGGCCAAAACTCCTTCCGAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
3994485 AAATTTTCAAAAATCCCCAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTC
451 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTC
3994550 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
3994615 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCTATCCATGGCTTG
581 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTG
*
3994680 CGCATCCTGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGCCCGCTCATTTCATCGGTT-
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTG
* *
3994744 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTGCGATAGTAGCA
711 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTGCGGTAGCAGCA
* *
3994809 TCGGCAGTATGCAGAGGGGGACCCGACCGATCTCCGACTTGTGCATCCCGCCCCTCTGGCCGACT
776 TCGGCAGCACGCAGAGGGGGACCCGACCGATC-CCGACTTGTGCATCCCGCCCCTCTGGCCGACT
* * * *
3994874 GAGCGCTCGCACGCTTGTTTCGTAGGTTGACTTAG
840 GAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAG
* * * *
3994909 GCATATGGAGTTTATTCCCAGTCGAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* *
3994974 CTCAGGCATGTGCTTGTGCCGCATTTTTCTTCGCCGGGGCACCATTGTCGAAGCATCGTCGGAGA
66 CTCGGGCATGTGCTTGTGCCGCATTTTTCTTCGCCGGGGCACCATTGTCGAAGCATCATCGGAGA
* *
3995039 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGATGGTATGGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCGGG-GGGTGTGGCACATGATGTGC
*
3995104 GATGGGTGCTGGTACTTGGCCCATATATTAGGGCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATT-GGGCCCTATCCCTCATCAAACCTCGAGAACTCACA
3995169 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
3995234 GGGGCACTTTTTTCTAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
** **
3995299 GCATGCCAACAAAAATACAAGGATCACG-CCTACCAAGTTTGCAGCCAAAACTCCTTTTGAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCC-ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * *
3995363 ATTTAAAAAAATACCGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTT
* * *
3995428 GCCATTAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * ** *
3995493 TTGGCACGTAGAAATATGAATATGTGCCTAAACCAACCTACCACCTTATCGATCCACGGCTTGTG
583 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCG
* * * * * * * * * *
3995558 CATCCCGTTTCTCTGGTCGGCATAATGC-CTGCCTGCCCGCCCGCCTGGTCGTTTCTTCGATTGG
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCTC-GCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGG
* * ** * * * *
3995622 CTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTATC-GTAGCAGGA
712 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTT-GCGGTAGCAGCA
* * * * * *
3995686 TCGGTAACATGCAGAGGGGGACCCGATCGATCCCTGACTTGTGCATTCTGCCCCTCTGGCC-AGC
776 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCC-GACTTGTGCATCCCGCCCCTCTGGCCGA-C
*
3995750 TGAGCGCCCACACGCTCGTTTTGTGGGTTGACTTAG
839 TGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAG
3995786 GCATACGGAGTTCATTCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
3995813 CATACGGAGT
Statistics
Matches: 2340, Mismatches: 265, Indels: 142
0.85 0.10 0.05
Matches are distributed among these distances:
867 6 0.00
868 472 0.20
869 6 0.00
870 85 0.04
871 1 0.00
872 2 0.00
873 5 0.00
875 198 0.08
876 608 0.26
877 166 0.07
878 1 0.00
880 1 0.00
881 25 0.01
883 1 0.00
884 3 0.00
887 1 0.00
888 1 0.00
890 1 0.00
891 3 0.00
892 1 0.00
893 19 0.01
894 157 0.07
895 6 0.00
896 1 0.00
902 4 0.00
903 2 0.00
904 2 0.00
905 82 0.04
906 266 0.11
907 212 0.09
908 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (874 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTTGTGCCGCATTTTTCTTCGCCGGGGCACCATTGTCGAAGCATCATCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTA
GGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTGCGGTAGCAGCATCGGC
AGCACGCAGAGGGGGACCCGACCGATCCCGACTTGTGCATCCCGCCCCTCTGGCCGACTGAGCGC
CCACACGCTCGTTTCGTGGGTTGACTTAG
Found at i:3995822 original size:26 final size:26
Alignment explanation
Indices: 3995786--3995864 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
3995776 GTTGACTTAG
3995786 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3995812 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
3995838 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3995864 G
1 G
3995865 ATCAGACCGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3996658 original size:26 final size:26
Alignment explanation
Indices: 3996629--3996706 Score: 147
Period size: 26 Copynumber: 3.0 Consensus size: 26
3996619 TTGACTTAGC
*
3996629 CATACGGAGTTTATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
3996655 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
3996681 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
3996707 ATCGGACTGG
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:3997574 original size:26 final size:26
Alignment explanation
Indices: 3997538--3997590 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3997528 GTTGACTTAG
3997538 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3997564 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3997590 G
1 G
3997591 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3998629 original size:26 final size:26
Alignment explanation
Indices: 3998585--3998637 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3998575 GTTGACTTAG
* *
3998585 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGGTCACTCCCAGTCTAA
3998611 GCATACGGAGGTCACTCCCAGTCTAA
1 GCATACGGAGGTCACTCCCAGTCTAA
3998637 G
1 G
3998638 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGGTCACTCCCAGTCTAA
Found at i:3998751 original size:173 final size:172
Alignment explanation
Indices: 3998312--3998841 Score: 636
Period size: 173 Copynumber: 3.1 Consensus size: 172
3998302 GCAGCAAGAT
* * * * * *
3998312 CGGTAGCACATAGAAGGGGACCCAATCGGTCCCCGGCTTGCGCATCCCGCCCCTCTGTCCGGCTG
1 CGGTAGCACACAGAAGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGACCGGTTG
* * **
3998377 AGCGCCCGC-CGCTCGTTTCGTGTGTTGACTTAGGCATACTGAGTTCATTCTTAGTCTAAGCATA
66 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * *
3998441 CGAAGTGT-ATTCCAGTATAAGATTGGACCGGACCGAGGGATGTTG
131 CGAAG-GTCATCCCAGTCTAAGATCGGACTGGACCGA-GG--GTTG
* * * * * * * *
3998486 TGGTAGCGCGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCACCCCTCTGGCTGGTTA
1 CGGTAGCACACAGAAGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGACCGGTTG
* * * *
3998551 AGAGCCCACATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
66 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* *
3998616 CGGAGGTCACTCCCAGTCTAAGATCGAACTGGACCGAGGGTTG
131 CGAAGGTCA-TCCCAGTCTAAGATCGGACTGGACCGAGGGTTG
3998659 CGGTAGCACACAGAAGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGACCGGTTG
1 CGGTAGCACACAGAAGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGACCGGTTG
* *
3998724 AGCGCCCGCACGCTTGTTTCATGGGTTGACTTTA-GCATACGGAGTTCATTCCCAGTCTAAGCAT
66 AGCGCCCGCACGCTCGTTTCGTGGGTTGAC-TTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * *
3998788 ATGCAGTTCATTCCCAATCTAAGATCGGA-TCGGATCGAGGGTTG
130 ACGAAGGTCA-TCCCAGTCTAAGATCGGACT-GGACCGAGGGTTG
*
3998832 CGGCAGCACA
1 CGGTAGCACA
3998842 TGCTGGGCTT
Statistics
Matches: 302, Mismatches: 49, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
172 1 0.00
173 159 0.53
174 64 0.21
175 56 0.19
176 22 0.07
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.23
Consensus pattern (172 bp):
CGGTAGCACACAGAAGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGACCGGTTG
AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
CGAAGGTCATCCCAGTCTAAGATCGGACTGGACCGAGGGTTG
Found at i:3998787 original size:26 final size:26
Alignment explanation
Indices: 3998757--3998810 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
3998747 GGTTGACTTT
* *
3998757 AGCATACGGAGTTCATTCCCAGTCTA
1 AGCATACGCAGTTCATTCCCAATCTA
*
3998783 AGCATATGCAGTTCATTCCCAATCTA
1 AGCATACGCAGTTCATTCCCAATCTA
3998809 AG
1 AG
3998811 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
AGCATACGCAGTTCATTCCCAATCTA
Found at i:3999814 original size:158 final size:158
Alignment explanation
Indices: 3999452--3999826 Score: 443
Period size: 158 Copynumber: 2.4 Consensus size: 158
3999442 AGTGCCTGCC
* *
3999452 CGCCCGCCCGCTCGTTTCGTCGGTT-AGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAG
1 CGCCCGCACGCTCGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAG
* * * * *
3999516 ACCAGACCAAGGGTTGCTGCAGTAGGATCGGCAGCACTCAGAGGGGACCCGATCGATCCCCGACT
65 ACCAGACCAACGGTTGCTGCAGCAGGATCGGCAGCACGCAGAGGGGACCCGACCGATCCCCGACA
*
3999581 TACGCATCCTGCCCCTCTGGCCGGCTGAG
130 TACGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
3999610 CGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATAAGGAGTTCATTCCCAATCTAAGATCGGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
* * * * * * *
3999675 -CTGACCCGACGTTTG-TGGCTGCAGGATTGG-AGCACGCAGAGGGGGACCCGACCGATCCTCGG
66 CCAGA-CCAACGGTTGCT-GCAGCAGGATCGGCAGCACGCAGA-GGGGACCCGACCGATCCCCGA
* * * *
3999737 CATGCGTATCCCGTCCCTTTGGCCGGCTGAG
128 CATACGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * *
3999768 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAATTCATTCCTAGTCTAAG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
3999827 CATACGAAGT
Statistics
Matches: 184, Mismatches: 29, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
157 13 0.07
158 170 0.92
159 1 0.01
ACGTcount: A:0.19, C:0.30, G:0.28, T:0.22
Consensus pattern (158 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
CCAGACCAACGGTTGCTGCAGCAGGATCGGCAGCACGCAGAGGGGACCCGACCGATCCCCGACAT
ACGCATCCCGCCCCTCTGGCCGGCTGAG
Found at i:3999839 original size:26 final size:26
Alignment explanation
Indices: 3999800--3999852 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3999790 GTTGACTTAG
*
3999800 GCATACGAAATTCATTCCTAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
*
3999826 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
3999852 G
1 G
3999853 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:4002062 original size:704 final size:712
Alignment explanation
Indices: 4000711--4002174 Score: 2176
Period size: 704 Copynumber: 2.1 Consensus size: 712
4000701 CCAGCATATG
* * ** *
4000711 GAGTTCATTCCTAGTCTAAGATCGGGCCAGACCGAGGGTTGCAGCAGCACTTGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACAAGCTGGGCTCAGGC
* *
4000776 ATGTGCTACTACCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATTGTCGGAGAACCTGAC
66 ATGTGCTACTACCGCATTTTTCTTCGCCGGGGCACCATCGCCGAAGCATCGTCGGAGAACCTGAC
* * *
4000841 CGACGGCATTGGGGTTCCGGTGATCGGGGGGGTCGGAGGGGGTGTGCGCACATGATGTGCGATGG
131 CGACGGCATTGGGGTTCCGATGATC-AGGGGGTCCGAGGGGGTGTGCGCACATGATGTGCGATGG
* *
4000906 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCT
195 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCAAGAACTCACACCCCT
*
4000971 CAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
260 CAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
4001036 CTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGATTTTTTTTGTGCATGC
325 CTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGC
* * **
4001101 CAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTGA
390 CAACAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAA
* *
4001166 AAAATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGC
455 AAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGA
* * *
4001231 AACATCACGCGAAGGCTTAAGGGACCATTATATGAATTTAAAAGCCATAAAAATGGCAATGGGAT
520 AACATCACGCGAAGGCTTAAGGGACCATTATATGAATTTAAAACCCATAAAAATGGCAATGGCAC
* * *
4001296 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTACGCATCCCG
585 GAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACAGCTTACGCATCCCA
* * *
4001361 TCTCTCTGGCCG-A-TG-T-A-G-TGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACA
650 TCTCTCTGGCCGAACAGTTCACGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACA
* * *
4001418 GAGTTCATTCCCAGTCCAAGATCGGACCGGACCGAGGGTTGCGGCAGCACAAGCTGGGCTCAGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACAAGCTGGGCTCAGGC
** * * * * *
4001483 ATGTGCTGGTGCCGTATTTTTCTTTGCCGGGGCACCATGGCCGGAGCATCGTCGGAGAACCTGAC
66 ATGTGCTACTACCGCATTTTTCTTCGCCGGGGCACCATCGCCGAAGCATCGTCGGAGAACCTGAC
4001548 CGACGGCATTGGGGTTCCGATGAT-AGGGGG-CCG-GGGGGTGTGCGCACATGATGTGCGATGGG
131 CGACGGCATTGGGGTTCCGATGATCAGGGGGTCCGAGGGGGTGTGCGCACATGATGTGCGATGGG
* *
4001610 TGCTGGTACTTGGCCCTTATATTGGCCCCTTAACCCTCATCATACCTCAAGAACTCACACCCCCT
196 TGCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCAAGAACTCACA-CCCCT
*
4001675 TAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
260 CAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
4001740 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGTGTTTTTAGCTGAATTTTTTTGTGCATGC
325 CTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGC
*
4001805 CAACAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCCTTTC-AAAACAATTTAA
390 CAACAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCCTTCCGAAAA-AATTTAA
* ** * * *
4001869 AAAAATCCCGAACTACAAAAAGTTTTGAAAATCATGAGAAATAGAAAATGAGTCGTCTTGCCATG
454 AAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATG
* * * * *
4001934 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTGGCA
519 AAACATCACGCGAAGGCTTAAGGGACCATTATATGAATTTAAAACCCATAAAAATGGCAATGGCA
* * *
4001999 CGAAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATAGATCCGC-GACTTGCGCATCC
584 CGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACAG-CTTACGCATCC
*
4002063 CATCTCTCTGGCCGACACAGTTCCCACCCGCCCGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGG
648 CATCTCTCTGGCCGA-ACAGTT--CA--CG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
*
4002128 CATACG
707 CATACA
* *
4002134 GAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGGGTTG
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
4002175 TGGTAGTAGG
Statistics
Matches: 675, Mismatches: 67, Indels: 21
0.88 0.09 0.03
Matches are distributed among these distances:
703 89 0.13
704 368 0.55
705 5 0.01
706 1 0.00
707 137 0.20
708 1 0.00
711 1 0.00
714 1 0.00
716 72 0.11
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (712 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACAAGCTGGGCTCAGGC
ATGTGCTACTACCGCATTTTTCTTCGCCGGGGCACCATCGCCGAAGCATCGTCGGAGAACCTGAC
CGACGGCATTGGGGTTCCGATGATCAGGGGGTCCGAGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCAAGAACTCACACCCCTC
AAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGCC
AACAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAA
AAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAA
ACATCACGCGAAGGCTTAAGGGACCATTATATGAATTTAAAACCCATAAAAATGGCAATGGCACG
AAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACAGCTTACGCATCCCAT
CTCTCTGGCCGAACAGTTCACGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACA
Found at i:4002799 original size:27 final size:26
Alignment explanation
Indices: 4002762--4002812 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
4002752 AACTCCATCC
*
4002762 AAAAAAATTTTAAAAAATCTTGAAACG
1 AAAAAAATTTT-AAAAATCGTGAAACG
* *
4002789 AAAAAAGTTTTGAAAATCGTGAAA
1 AAAAAAATTTTAAAAATCGTGAAA
4002813 AATAGAAAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 11 0.52
27 10 0.48
ACGTcount: A:0.57, C:0.06, G:0.12, T:0.25
Consensus pattern (26 bp):
AAAAAAATTTTAAAAATCGTGAAACG
Found at i:4003002 original size:8 final size:8
Alignment explanation
Indices: 4002989--4003013 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
4002979 TCGGCGTAGT
4002989 GCCCGCTC
1 GCCCGCTC
4002997 GCCCGCTC
1 GCCCGCTC
4003005 GCCCGCTC
1 GCCCGCTC
4003013 G
1 G
4003014 TTTCATCGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.60, G:0.28, T:0.12
Consensus pattern (8 bp):
GCCCGCTC
Found at i:4003472 original size:26 final size:26
Alignment explanation
Indices: 4003432--4003484 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4003422 TACTTGGCCC
* * *
4003432 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAATCTAA
4003458 GCATACAGAGATCATTCCCAATCTAA
1 GCATACAGAGATCATTCCCAATCTAA
4003484 G
1 G
4003485 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGATCATTCCCAATCTAA
Found at i:4003634 original size:242 final size:244
Alignment explanation
Indices: 4003190--4003675 Score: 563
Period size: 242 Copynumber: 2.0 Consensus size: 244
4003180 GTTGACTTAG
* * * * *
4003190 GCATACAGAGTTCATTGCCAGCATAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCGGAC
1 GCATACAGAGTTCATTCCCAGCATAAGCATACAAAGATCATTCCCAATCTAAGATCGAACCAGAC
* * * * * **
4003255 CGAGGTTTGCGGTAGCACATGCTCGGCTCGCGAATGTGGTAGTGCTGCATTTTTCTTTTTCGGGG
66 CGAGGGTTGCGGCAGAACATGCTCGGCTCGCGAATGTGCTAGTGCTGCAATTTTCTTCGTCGGGG
** * * * *
4003320 TGCCATCGATGGAGCATCGCAGGAGAACCTGACCAGCAGGACTGGGTTTTCGACCATCAGGGGGG
131 CACCATCGATAGAGCATCGCAGGAGAACCTGACCAGCAGGACTGGGGTTCCGACAATCAGGGGGG
*
4003385 CC-GGGGGG-GTGCACACATGTTATGCGATGGGTGCTGGTACTTGGCCC
196 CCGGGGGGGTGTGCACACATGATATGCGATGGGTGCTGGTACTTGGCCC
* *
4003432 GCATACGGAGTTCATTCCCAGTC-TAAGCATACAGAGATCATTCCCAATCTAAGATCGAACCAGA
1 GCATACAGAGTTCATTCCCAG-CATAAGCATACAAAGATCATTCCCAATCTAAGATCGAACCAGA
* * * * *
4003496 CCGAGGGTTGCGGCAGAACATGGTGGGCTCGGGCATGTGCTGGTGCTGCAATTTTCTTCGTCGGG
65 CCGAGGGTTGCGGCAGAACATGCTCGGCTCGCGAATGTGCTAGTGCTGCAATTTTCTTCGTCGGG
* * * * *
4003561 GCACCATTGCA-AGAGCATTGCCA-GAGAACCTGACC-G-ACGGCATTGGGGTTCCGGCAATCGG
130 GCACCATCG-ATAGAGCATCG-CAGGAGAACCTGACCAGCA-GG-ACTGGGGTTCCGACAATCAG
* * * *
4003622 GGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGTTACTTGGCCC
191 GGGGGCCGGGGGGGTGTGCACACATGATATGCGATGGGTGCTGGTACTTGGCCC
4003676 TTATATTGGC
Statistics
Matches: 202, Mismatches: 35, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
240 1 0.00
241 3 0.01
242 153 0.76
243 10 0.05
244 35 0.17
ACGTcount: A:0.21, C:0.24, G:0.33, T:0.23
Consensus pattern (244 bp):
GCATACAGAGTTCATTCCCAGCATAAGCATACAAAGATCATTCCCAATCTAAGATCGAACCAGAC
CGAGGGTTGCGGCAGAACATGCTCGGCTCGCGAATGTGCTAGTGCTGCAATTTTCTTCGTCGGGG
CACCATCGATAGAGCATCGCAGGAGAACCTGACCAGCAGGACTGGGGTTCCGACAATCAGGGGGG
CCGGGGGGGTGTGCACACATGATATGCGATGGGTGCTGGTACTTGGCCC
Found at i:4004365 original size:26 final size:25
Alignment explanation
Indices: 4004336--4004387 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
4004326 GTTGACTTAG
4004336 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATA-GAAGTTCATTCCCAGTCTAA
* *
4004362 GCATAGGAGTTCATTCCTAGTCTAA
1 GCATAGAAGTTCATTCCCAGTCTAA
4004387 G
1 G
4004388 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATAGAAGTTCATTCCCAGTCTAA
Found at i:4005770 original size:26 final size:26
Alignment explanation
Indices: 4005739--4005817 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
4005729 GTTGACTTAG
*
4005739 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
4005765 GCATACGAAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
4005791 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
4005817 G
1 G
4005818 ATCAGACCAG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:4007493 original size:877 final size:874
Alignment explanation
Indices: 4005791--4009091 Score: 4038
Period size: 877 Copynumber: 3.7 Consensus size: 874
4005781 TCCAGTCTAA
* * * *
4005791 GCATAC-GTAGTTCATTCCCAGTCTAAGATCAGACCAGACCTAGGGTTGCGGCAGCACATGCTGG
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
4005855 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCATCGGAGCATTGCCGGAG
65 GCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCAGAG
* ** **
4005920 AACCTGACCGAC-AGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGTAGGTGTGTGCACATGAT
130 AACCTGACCGGCGA-CATTGGGGTTCCGACGATCGGGGGGGCCGGGG--GGTGTGCACACATGAT
*
4005984 GTGCGATGGGTGCTGGTACTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* * *
4006049 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTAA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
4006114 AATCGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
4006179 TTTTGCATGCCAACAAAAATATAAGGATCACCTCTACCAAGTTTG-GCGCCCAAAAT-CTTTCTG
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAG-G-CCAAAATCCTTTC-G
* *
4006242 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTC
449 AAAAAATTTTAAAAAATCTCGAACCCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* * * * * *
4006307 GTTTTGCCATGAACCTCCATGTGAGGGCTTTAGGGACCATTGTATGAATTTACAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
4006372 TGGCACTAGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACAGC
579 TGGCATTAGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
4006437 TTGCGCATCCCGTCTCTCTGGCCGGCATAGT-CCCGGCCCGCCTGGCCGCCCGCTCGTTTCATCG
644 TTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCC-GCCCGCCCGCCCTCCCGCTCGTTTCGTCG
* *
4006501 ATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT-TGAAATGGACCGAGGGTTGTGGCAC
708 GTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCTG-ATTGGACCGAGGGTTGTGGCAC
* * * * * *
4006565 GGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCACCCTTCTGGCC
772 AGGATCGGCAGCACGCAGAGGGGGA-CCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
4006630 GGCTGAGCGCTCGCAAGCTCGTTTCGTGGGTTGACTTAG
836 GGCTGAGCACCCGCACGCTCGTTCCGTGGGTTGACTTAG
*
4006669 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * *
4006734 CTCAGGCATATGCTGGTGCCGTATTTTTTTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGA
66 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCAGAGA
* *
4006799 ACCTGACTGGCGACATTGGGGTTCCGACGATCCGGGGGGCCAGGGGGGTGTGCACACATGATGTG
131 ACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCACACATGATGTG
* * *
4006864 CGATGGGTGCTGGTACTTGGCCCTTATATGGGCCCCTTATCTCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *
4006929 ACCCCCTTAAAGAGCATTTGAGATGTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGTAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
4006994 GGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
4007059 TGCAAGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGAGGCCAAAACTCCTTTCG-AAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAA-TCCTTTCGAAAAA
*
4007123 ATTTTAAAAAATCTCGAGCCCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
4007188 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTCACAAGCCACAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
4007253 TTGGCATGCAGAAATATGAAGATGTGCGTAAACCCACCTACCACCTTATCGATCCACGGCTTACG
584 TTAGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * *
4007318 CATCTTGTCTCTCTAGTCGGCGTAGTGCCCGCCCGCCCGCCCTCCCACTCGTTTCGTCGGTTGGC
649 CATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGC
* * * * * *
4007383 TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCTGATTGGACTGAGGGTTGCGACAGCAGGATT
714 TTAGGCATACGGAGTTCATTCCTAGTCTAAGATCTGATTGGACCGAGGGTTGTGGCA-CAGGATC
4007448 GGCAGCACGCAGAGGGGGACCTGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
778 GGCAGCACGCAGAGGGGGACC-GGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
*
4007513 GCACCCGCACGCTCATTCCGTGGGTTGACTTAGGCATACGG
842 GCACCCGCACGCTCGTTCCGTGGGTTGAC-T-----TA--G
4007554 AGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTT
1 -G-------C-A---T-A-C--A--GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTT
* * * *
4007619 CCGACAGCACATGCTGGGCTCAGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGG---CA---
48 GCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCG
*
4007678 T-----CATCGCCAGAGAACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGG
113 TCGGAGCATCGCCAGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCC--GGGG
* *
4007738 GGTGTGCACACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTCTATTGGCCCCCTATCCCTCA
176 GGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * **
4007803 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTATCAGTAG
241 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
4007868 CCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
306 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * *
4007933 TTGTAGCTGAATTTTTTTGTGCATGCCAACAAAAATTCAAGGATCATGTCTACCAAGTTTGGGGC
371 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGGC
* * * * * *
4007998 CAAAACTCCTTCCGAAATAATTTTAAAAAATCTTGAACCGCAAAAGGTTTCAAAAATCATGTAAA
436 CAAAA-TCCTTTCGAAAAAATTTTAAAAAATCTCGAACCCCAAAAAGTTTCAAAAATCATGAAAA
* *
4008063 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGAGACCATTGTATGAATTT
500 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
4008128 ACAAGCCATAAAATTGGCATTAGCATGCAGAAATAGGAAGATGTGCCTAAACCCACCTACCACCC
565 ACAAGCCATAAAAATGGCATTAGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * *
4008193 TATTGATCCACGGCTTGCGCATCCCGTCTCTTTGGCTGGTGTAGTGCCCGCCTACCCGCCCGCCC
630 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCG----CCCGCCCGCCC
* *
4008258 GT-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGG
691 -TCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCTGATTGG
* * * * * *
4008322 ACCAAAGGTTGTGGCACCAGGATCGGCAGCACGTAGAGGGGGACCCGACTGATCCCCGGCTTGTG
755 ACCGAGGGTTGTGGCA-CAGGATCGGCAGCACGCAGAGGGGGACCGGTC-GATCCCCGGCTTGCG
** * * *
4008387 CATCTTGCCCCT-TGGCTGGCTGATCACCCGCACGCTCGTTCCGTGGGTTGGCTTAG
818 CATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTCCGTGGGTTGACTTAG
* *
4008443 GCATACGGAGTTCATTCCCTGTCTAAGCATACGGAGTTCATTCCCAGACTAAGATCGAACCAGAC
1 GCATACAGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A-T------C---G---G-ACC-GA-
* * ** * * * **
4008508 CGAATGTTGCGGCAGCACATGCAGGGCTTGGGCATGTGCTCGTGTCAAATTTTTCTTCGTTGGGG
43 -G--GGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGG
* * * * * * *
4008573 CACCATCGTTGGAGCATTGTC-GTAGTACCTGACTGGCGGCGTTGGGGTTCCGACGATCGGGGGG
105 CACCATCGTCGGAGCATCGCCAG-AGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGG
* * *
4008637 GCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGTTACTTGGCCCTTATATTGGCCCCCTA
169 GCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
4008702 TCACTCATCAAACCT-AGAGAAC-CGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
234 TCCCTCATCAAACCTCA-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
4008765 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTATACA
298 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
4008830 CTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAGTACAAAGATCACGGTCTACCAA
363 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC-GTCTACCAA
* *
4008895 GTTTGAGG-C---ATCC-TTCGAAAAAATTTTAAAATATC-CTG-ACCGCAAGAAAAAGTTTCAA
427 GTTTGAGGCCAAAATCCTTTCGAAAAAATTTTAAAAAATCTC-GAACC-C--CAAAAAGTTTCAA
* *
4008953 AAATCTATG-AAAATAAAAAACGAGT-GTCTTGCCATGAAACTTCACGTGAA-GCTTAATGGACC
488 AAATC-ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * *
4009015 ATTGAATGAA-TTA-AAGCC-TAAAAAT-GCA-TGGC-TACAGGAATATGAAGATGTGCCTAAAC
552 ATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCATGCAGAAATATGAAGATGTGCCTAAAC
4009074 CCA--TACCACCCTATCGAT
617 CCACCTACCACCCTATCGAT
4009092 ACAGGCATGC
Statistics
Matches: 2104, Mismatches: 230, Indels: 164
0.84 0.09 0.07
Matches are distributed among these distances:
871 19 0.01
872 2 0.00
873 1 0.00
874 1 0.00
875 2 0.00
876 287 0.14
877 330 0.16
878 156 0.07
879 7 0.00
880 1 0.00
881 1 0.00
883 2 0.00
885 2 0.00
886 1 0.00
888 2 0.00
889 1 0.00
891 3 0.00
892 67 0.03
893 258 0.12
894 233 0.11
895 4 0.00
896 4 0.00
897 94 0.04
898 135 0.06
899 8 0.00
900 43 0.02
901 29 0.01
902 32 0.02
903 93 0.04
905 149 0.07
906 92 0.04
907 1 0.00
908 44 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (874 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCAGAGA
ACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAATCCTTTCGAAAAAAT
TTTAAAAAATCTCGAACCCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
AGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCTAGTCTAAGATCTGATTGGACCGAGGGTTGTGGCACAGGATCGGC
AGCACGCAGAGGGGGACCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
CCGCACGCTCGTTCCGTGGGTTGACTTAG
Found at i:4007582 original size:26 final size:26
Alignment explanation
Indices: 4007546--4007598 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4007536 GTTGACTTAG
*
4007546 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4007572 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4007598 G
1 G
4007599 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4008494 original size:26 final size:26
Alignment explanation
Indices: 4008443--4008495 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4008433 GTTGGCTTAG
* *
4008443 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
4008469 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACGGAGTTCATTCCCAGACTAA
4008495 G
1 G
4008496 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:4008685 original size:894 final size:885
Alignment explanation
Indices: 4006669--4009091 Score: 3061
Period size: 893 Copynumber: 2.7 Consensus size: 885
4006659 GTTGACTTAG
* *
4006669 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
4006734 CTCAGGCATATGCTGGTGCCGTATTTTTTTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGA
66 CTCAGGCATGTGCTGGTGCCGAATTTTTCTTCGTCGGGGCACCATCGT-GGAGCAT-G-C-GAGA
* *
4006799 ACCTGACTGGCGACATTGGGGTTCCGACGATCCGGGGGGCCAGGGGGGTGTGCACACATGATGTG
127 ACCTGACTGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTG
* * * *
4006864 CGATGGGTGCTGGTACTTGGCCCTTATATGGGCCCCTTATCTCTCATCAAACCTCAAGAACTCAC
192 CGATGGGTGCT-G---TT---AC-T-T-T-GGCCCCCTATCACTCATCAAACCTCGAGAACTCAC
* * *
4006929 ACCCCCTTAAAGAGCATTTGAGATGTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGTAAT
246 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
4006994 GGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
311 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
4007059 TGCAAGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGAGGCCAAAACTCCTTTCGAAAAA
376 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCC-TTCGAAAAA
* * *
4007124 TTTTAAAAAATCTCGAGCCCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
440 TTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCATG-AAAATAGAAAACGAGTCGTCTTG
* * * *
4007189 CCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTCACAAGCCACAAAAATGGCAT
504 CCATGAAACTTCACGTGAAAGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
4007254 TGGCATGCAGAAATATGAAGATGTGCGTAAACCCACCTACCACCTTATCGATCCACGGCTTACGC
568 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGC
**
4007319 ATCTTGTCTCTCTAGTCGGCGTAGTGCCCGCCCGCCCGCCCTCCCACTCGTTTCGTCGGTTGGCT
633 ATCCCGTCTCTCTAGTCGGCGTAGTGCCCGCCCGCCCGCCCTCCCACTCGTTTCGTCGGTTGGCT
* * ** * * *
4007384 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCTGATTGGACTGAGGGTTGCGACAGCAGGATTG
698 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAAGGTTGCGACACCAGGATCG
* *
4007449 GCAGCACGCAGAGGGGGACCTGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
763 GCAGCACGCAGAGGGGGACCCGCTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
4007514 CACCCGCACGCTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
828 CACCCGCACGCTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* *
4007572 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTCCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
4007637 CTCAGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCATCATC---G-CCA---GAGAACCT
66 CTCAGGCATGTGCTGGTGCCGAATTTTTCTTCGTCGGGGCACCATCGTGGAGCATGCGAGAACCT
* *
4007695 GACCGGCGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGTGCACACATGATGTGCGA
131 GACTGGCGACATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCACACATGATGTGCGA
* *
4007760 TGGGTGCTGGCACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
195 TGGGTGCT-G----T-----TACT-TTGGCCCCCTATCACTCATCAAACCTCGAGAACTCACACC
* ** *
4007825 CCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTATCAGTAGCCATTAAAGTGTCTGAAATTGG
249 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
4007890 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATTTTTTTGTGC
314 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
4007955 ATGCCAACAAAAATTCAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAATAATT
379 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTT-CGAAA-AATT
*
4008020 TTAAAAAATCTTGAACCGCAAAAGGTTTCAAAAATCATGTAAAATAGAAAACGAGTCGTCTTGCC
442 TTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCATG-AAAATAGAAAACGAGTCGTCTTGCC
* *
4008085 ATGAAACTTCACGTGAAAGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAATTGGCATTA
506 ATGAAACTTCACGTGAAAGCTTAAG-GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
4008150 GCATGCAGAAATAGGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCAT
570 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCAT
* * * *
4008215 CCCGTCTCT-TTGGCTGGTGTAGTGCCCGCCTACCCGCCCGCCCGT-CCGCTCGTTTCGTCGGTT
635 CCCGTCTCTCTAGTC-GGCGTAGTGCCCG----CCCGCCCGCCC-TCCCACTCGTTTCGTCGGTT
* * * *
4008278 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCAAAGGTTGTGGCACCAGG
694 GGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAAGGTTGCGACACCAGG
* * ** *
4008343 ATCGGCAGCACGTAGAGGGGGACCCGACT-GATCCCCGGCTTGTGCATCTTGCCCCT-TGGCTGG
759 ATCGGCAGCACGCAGAGGGGGACCCG-CTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
4008406 CTGATCACCCGCACGCTCGTTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCT-GTCTAA
823 CTGAGCACCCGCACGCTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCTAGTCTAA
* * * * ** *
4008469 GCATACGGAGTTCATTCCCAGACTAAGATCGAACCAGACCGAATGTTGCGGCAGCACATGCAGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * * *
4008534 CTTGGGCATGTGCTCGTGTCAAATTTTTCTTCGTTGGGGCACCATCGTTGGAGCATTGTCGTAGT
66 CTCAGGCATGTGCTGGTGCCGAATTTTTCTTCGTCGGGGCACCATCG-TGGAGCA-TG-CG-AGA
* * *
4008599 ACCTGACTGGCGGCGTTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
127 ACCTGACTGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTG
* * *
4008663 TGATGGGTGCTGTTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTAGAGAAC-CGC
192 CGATGGGTGCTGTTA-------C---T-TTGGCCCCCTATCACTCATCAAACCTCGAGAACTCAC
4008727 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
246 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
4008792 GGGGACATTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTA
311 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
4008857 TGCATGCCAACAAAAGTACAAAGATCACGGTCTACCAAGTTTGAGG-C---A-TCCTTCGAAAAA
376 TGCATGCCAACAAAAATACAAGGATCAC-GTCTACCAAGTTTGAGGCCAAAACTCCTTCG-AAAA
* * *
4008917 ATTTTAAAATATCCTG-ACCGCAAGAAAAAGTTTCAAAAATCTATGAAAATAAAAAACGAGT-GT
439 ATTTTAAAAAATCTTGAACCGC---AAAAAGTTTCAAAAATC-ATGAAAATAGAAAACGAGTCGT
*
4008980 CTTGCCATGAAACTTCACGTG-AAGCTTAATGGACCATTGAATGAA-TTA-AAGCC-TAAAAAT-
500 CTTGCCATGAAACTTCACGTGAAAGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
4009040 GCA-TGGC-TACAGGAATATGAAGATGTGCCTAAACCCA--TACCACCCTATCGAT
564 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
4009092 ACAGGCATGC
Statistics
Matches: 1338, Mismatches: 136, Indels: 103
0.85 0.09 0.07
Matches are distributed among these distances:
892 58 0.04
893 246 0.18
894 229 0.17
895 6 0.00
896 5 0.00
897 160 0.12
898 140 0.10
899 12 0.01
900 38 0.03
901 34 0.03
902 34 0.03
903 105 0.08
905 150 0.11
906 81 0.06
907 1 0.00
908 39 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (885 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGAATTTTTCTTCGTCGGGGCACCATCGTGGAGCATGCGAGAACCT
GACTGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGAT
GGGTGCTGTTACTTTGGCCCCCTATCACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
ATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCGAAAAATTTTAAAAAATCTTGA
ACCGCAAAAAGTTTCAAAAATCATGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
AAAGCTTAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTAGTCG
GCGTAGTGCCCGCCCGCCCGCCCTCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCAT
TCCCAGTCTAAGATCAGATCGGACCAAAGGTTGCGACACCAGGATCGGCAGCACGCAGAGGGGGA
CCCGCTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTCC
GTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
Found at i:4010663 original size:26 final size:26
Alignment explanation
Indices: 4010627--4010679 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4010617 GTTGACTTAG
4010627 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4010653 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4010679 G
1 G
4010680 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4012087 original size:902 final size:900
Alignment explanation
Indices: 4010346--4014840 Score: 5377
Period size: 902 Copynumber: 5.0 Consensus size: 900
4010336 CAAGCCATAA
*
4010346 AAATTTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* *
4010411 TCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACG
66 TCTGGCCGACGTAGTGCCCGCCTGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
* * * * * *
4010476 AAGTTCATTCGCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAAGATCGACAGCACGCA
131 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACACA
* * ** *
4010541 GAGGGGGACCGGTCGATCCCTGGCTTGCGCATCCCGGCCCTCTGGTCGGTTGAGCGCCCGCACGC
196 GAGGGGGACCGGTCAATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCGCCCGCACGC
** *
4010606 TCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCC
261 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCC
* * * *
4010671 CAGTCTAAGATCGGACCAGACCGAGGGTTGCAGTAGCACATGCTGGGCTCGGGCATGAGCTGGTG
326 CAGTCTAAGATCGGACTAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTG
* * * * * *
4010736 CCACATTTTTCTTCCCCGAGGCACCATCG-TCGGAGCATCGCCAAAGAACCTGACCGGCGACATT
391 CCACATTTTTCTTCGCCGGGGCACCATCGCT-GGAGCATC-ACAGAGAACCTGACCGACGGCATT
* * * *
4010800 GGGGTTCCGGCGATCAGGGGGGTCGGGGGG-GTGTG----TG-TGTGCGATGGGTGATGGTACTT
454 GGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
4010859 GGCCCTTATATTGGGCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
519 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATT
4010924 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTCTTCAAA
584 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTCTTCAAA
*
4010989 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
649 TGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * * * *
4011054 CAGGGATCATGTTTACCAGGTTTGGGGCCAAATCTCCATCCGAAAAATTTTTAAAAATCCCGAAC
714 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAATTTTAAAAAATCCCGAAC
* *
4011119 CGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGACTCGTCTTGCCATGAAACTTCACGTGA
779 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * *** *
4011184 AGGCTTAAGGGACCATTGTATGAGTTTAAAAGCCATAAAAGTGGCATTGGCACACAA
844 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAG
4011241 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * *
4011306 TCTGGCCGACGTAGTGCCCGCCTGCCCACCCGTCCGCTTGTTTCGTCAGTTGGCTTAGGCATATG
66 TCTGGCCGACGTAGTGCCCGCCTGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
* ** ** * *
4011371 GGGTTCATTCCCAGTCTAAGATCAGACCATACCGAGGGTTTTGGCAGCAATATCGGTAGCACACA
131 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACACA
* * * *
4011436 GAGGGGGACCTGACAAACCCTCGGCTTGCGCATCCCACCCTTCTGGCCGGTTGAGCGCCCGCACG
196 GAGGGGGACCGGTCAATCCC-CGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCGCCCGCACG
* *
4011501 CTCG-TTCTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
260 CTCGTTTC-ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
*
4011565 CCCAGTCTAAGATCGGACTAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTAG
324 CCCAGTCTAAGATCGGACTAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGG
* * * * * * * *
4011630 TGCCATATTTTTCTTCGTCAGGGCACCATCGCTAGAGCATTACATGAGAACCTGACCGGCGACAA
389 TGCCACATTTTTCTTCGCCGGGGCACCATCGCTGGAGCATCACA-GAGAACCTGACCGACGGCAT
4011695 TGGGGTTCCGGCGATC-GGGGGGCCGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
453 TGGGGTTCCGGCGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
4011759 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAAAGTA
517 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCA
*
4011824 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTCTTCA
582 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTCTTCA
* * *
4011889 AATGGTCACAAAATCTTGTACACTTTGAATTTTTACCTGAATTTTTTTGTGCATACCAACAAAAA
647 AATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* ** * *
4011954 TACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTTATTCCGAAAAATTTTTAAAAATCCTGA
712 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAATTTTAAAAAATCCCGA
* ** *
4012019 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGTGATGAAACTTGACGT
777 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
4012084 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAG
842 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAG
* * * * *
4012143 AAATATGAAGATGTGCCTAAACCCCCCAACCACCCTATTGATCCACGGCTTTCGTATCCCGTCTC
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * *
4012208 TCCGGCCGACGTAGTG--C-CC-ACCCACCCGTCCC-CTCGTTTCATCAGTTGGCTTAGGCATAC
66 TCTGGCCGACGTAGTGCCCGCCTGCCCACCCG-CCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
* * * * *
4012268 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGTAGGATCGGTAGCACAC
130 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACAC
* ** * * * * * * * * *
4012333 AGAAGGGGACCCGGTTGATCCCCGACTTGCTCATCCCACCCTTCTGGCTGGCTGAGCACCTGTAT
195 AGAGGGGGA-CCGGTCAATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCGCCCGCAC
* *
4012398 GCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCAAGTCTAAGCATACAGAGTTCATT
259 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
* * * * * * * * *
4012463 CCCAGTCTAAGGTCAGACTGGACCGAGGTTTGCGGCATCACATGTTGGGGTC-AGGCATGTACTG
324 CCCAGTCTAAGATCGGACTAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGA-GCATGTGCTG
* * * * *
4012527 GTGTCACATTTTTGTTCGCTGGGGCACCATCG-TCGAAGCATCACCGGAGAACCTGACCGACGGC
388 GTGCCACATTTTTCTTCGCCGGGGCACCATCGCT-GGAGCATCA-CAGAGAACCTGACCGACGGC
* * * * *
4012591 ACTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATCATGTGCGATGGGTGCTAGTA
451 ATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
4012656 CTTGACCCTTATATTGGCCCCCTAT-CC-C-TC--A--T-C---A---A-A---CCTT-AAGAGC
516 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGC
* * *
4012702 ATTTGAGATTTTATAGGTTGGCTGCCA-TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
581 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTCTTC
* * * *
4012766 AAATGGTCACAAAATCTTGTACACTTTGAGATTTTACCTGAATTTTTTTATGCATGCCAACAAAT
646 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* ** * * * *
4012831 ATACAAGGATCATGTCTATGAAGTTTTGGGCCAAAACTGCTTACGAAAAAATTTTAAAAAATCCT
711 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAATTTTAAAAAATCCC
** * *
4012896 GAACCCCAAAAAGTTTCAAAAATCGTGAAAAAGAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
775 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
*
4012961 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
840 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAG
* * * * ** * *
4013022 AAATATGAAGATGTGCCTAAACCCACCTGCCATCCTATCAATCAACATCTTGTGCATCCCGTATC
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * *
4013087 TCTGGCCGACATAGTGCCCGACTGCCCGCCCGCCCTCTCGTTTCATTGGTTGGCTTAGGCATACG
66 TCTGGCCGACGTAGTGCCCGCCTGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
* * * * *
4013152 GAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGTAGCAGGATCGGCAGCACATA
131 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACACA
* * * * * * ** *
4013217 AAGGGGGACAC-GACTAT-CCCGACTTGCGTATCCCGCCCCTCTGGCCGACTGAGCGCCCGAACG
196 GAGGGGGAC-CGGTCAATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCGCCCGCACG
* * * *
4013280 CTTGTTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATTC
260 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTC
* *
4013345 CCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCTGATCAGACCGAGGTT-TACGATAGC
325 CCAGTCTAAG-AT-CG--G---------A--CT-AGA-C----C-GA--G-GGTTGCA-G-CAGC
* * * * * *
4013409 ACCTGTTGGACTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACTATCGTCT-GAGC
363 ACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCG-CTGGAGC
* * * * *
4013473 ATCGCCGAAGAACCTGACCGATGGCATTGGGGTTCCGGCAATCGGGGGGGCCGGGGGGGTGTTCG
427 ATCACAG-AGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCG
*
4013538 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCT
490 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
** * *
4013603 TGAGAACTCACACCCCTTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
555 CCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * * *
4013668 GTGTCTGAAATGGGGACACTTTTTTCACATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCT
620 GTGTCTGAAATGGGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT
* *
4013733 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATGACGTCTACAAAGTTT-GGGCCAAAACTC
685 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* *
4013797 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA-AGAAAA
750 CTTCCG-AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
*
4013861 CGAGTCGTCTTGCCATG-AACTTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
814 CGAGTCGTCTTGCCATGAAAC-TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
4013925 ATAAAAATGGCATTGGCATGTAG
878 ATAAAAATGGCATTGGCATGTAG
* * * * * *
4013948 AAATATGAAGATGTTCCTAAACCCACCTATCACCCTATCAATCCACGTCTTGTGCATCTCGTCTC
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* ** * *
4014013 T-TCGGTCGGTGTAGTG--C-CC-G---A-CCGCCCGCTGGTTTCGTCGGTTGGCTTAGGCATAC
66 TCT-GGCCGACGTAGTGCCCGCCTGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
* * * * *
4014069 GGAGTTCATTCTCAGTCTAAGAGT-GGACAGGACCGAGGGTTGCGACAGGAAGATCGGCAG--CA
130 GGAGTTCATTCCCAGTCTAAGA-TCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACA
* *
4014131 C---GGGGGACCCGGTCAATCCCCGGCTTGCACATCCCACCCCTCTGGCCGGTTGAGTGCCCGCA
194 CAGAGGGGGA-CCGGTCAATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCGCCCGCA
* *
4014193 GGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A-
258 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
*
4014250 --CC-G-----GAT-----T-GA--G-GGTTATG--GCAGCACATGCTGGGCTCG-GACATGTGC
323 TCCCAGTCTAAGATCGGACTAGACCGAGGGT-TGCAGCAGCACATGCTGGGCTCGAG-CATGTGC
* * * * * * * *
4014295 TGGTGCCATATTTTTCTTCGTCGGGGCTCCATCACCGGAACATCGCCAGAGAACCTGATCGACGG
386 TGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCTGGAGCATC-ACAGAGAACCTGACCGACGG
** * * * * *
4014360 CATTGGGGTTCCGAAGATTGGTGGGGCCGGGGGGGTGTGCACACATGATGTGCGATCGATGCTGG
450 CATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * * *
4014425 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCACTAGAACTCATACCGCCTTAAAGA
514 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGA
4014490 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT-T
579 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTCT
* * * *
4014554 TCCAAATGGTCACAAAATCTTGTACACTTCT-AGTTTTTAGCTGAAATCTTTTGTACATGCTAAC
644 T-CAAATGGTCACAAAATCTTGTACACTT-TGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * *
4014618 AAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCCAAAAAGATTTGAAAAA
707 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA-TTTTAAAAAA
* * * * *
4014683 TCCCAAACCGTAAAAAGTTTCAAAAACCATGAAAAATAGAAAAACAAGTTGTCTTTCCATGAAAC
771 TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG-AAAACGAGTCGTCTTGCCATGAAAC
* * * ** *
4014748 TTAATGTGAAGGCTTAAGGGACCATTGCATGAATTTGGAAGCCATAAAAATGGCATTGACATGTA
835 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTA
4014813 G
900 G
*
4014814 AAATACGAAGATGTGCCTAAACCCACC
1 AAATATGAAGATGTGCCTAAACCCACC
4014841 AGCACGCTCA
Statistics
Matches: 3123, Mismatches: 382, Indels: 219
0.84 0.10 0.06
Matches are distributed among these distances:
862 4 0.00
863 331 0.11
864 60 0.02
865 4 0.00
866 104 0.03
867 3 0.00
869 1 0.00
877 2 0.00
878 132 0.04
879 231 0.07
880 4 0.00
881 106 0.03
882 9 0.00
883 102 0.03
884 1 0.00
885 1 0.00
887 1 0.00
890 1 0.00
891 1 0.00
893 1 0.00
894 1 0.00
895 206 0.07
896 230 0.07
897 11 0.00
898 367 0.12
899 25 0.01
900 1 0.00
901 2 0.00
902 446 0.14
903 2 0.00
904 1 0.00
905 3 0.00
906 6 0.00
907 93 0.03
908 59 0.02
909 3 0.00
910 1 0.00
911 3 0.00
912 1 0.00
913 9 0.00
914 7 0.00
915 83 0.03
916 2 0.00
918 81 0.03
919 2 0.00
922 2 0.00
923 2 0.00
924 1 0.00
925 4 0.00
926 157 0.05
927 96 0.03
928 117 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGACGTAGTGCCCGCCTGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACACA
GAGGGGGACCGGTCAATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCGCCCGCACGC
TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCC
CAGTCTAAGATCGGACTAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTG
CCACATTTTTCTTCGCCGGGGCACCATCGCTGGAGCATCACAGAGAACCTGACCGACGGCATTGG
GGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTCTTCAAATG
GTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAATTTTAAAAAATCCCGAACCG
TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAG
Found at i:4013332 original size:26 final size:26
Alignment explanation
Indices: 4013302--4013380 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
4013292 GTTCACTTAG
*
4013302 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4013328 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
4013354 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4013380 G
1 G
4013381 ATCTGATCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4014906 original size:26 final size:26
Alignment explanation
Indices: 4014870--4014921 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
4014860 TTGACTTAGT
*
4014870 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
4014896 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
4014922 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:4015780 original size:26 final size:26
Alignment explanation
Indices: 4015750--4015802 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4015740 GTTAACTTAG
4015750 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
4015776 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
4015802 G
1 G
4015803 ATCGAACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:4016675 original size:26 final size:26
Alignment explanation
Indices: 4016638--4016690 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4016628 GTTGACTTAG
* **
4016638 GCATACGGAGTTCATTTTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
4016664 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
4016690 G
1 G
4016691 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:4017359 original size:26 final size:26
Alignment explanation
Indices: 4017319--4017371 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4017309 GTTGACTGAG
*
4017319 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
4017345 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
4017371 G
1 G
4017372 ATTAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:4018250 original size:26 final size:26
Alignment explanation
Indices: 4018221--4018273 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
4018211 GTTGACTTAG
4018221 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
** **
4018247 GCATATGGAGTTCATTCTGAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4018273 G
1 G
4018274 ATAGGAGCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4018988 original size:17 final size:17
Alignment explanation
Indices: 4018966--4019003 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
4018956 CGGCAGCACA
4018966 TGCTGGGCTCGGGCATG
1 TGCTGGGCTCGGGCATG
4018983 TGCTGGGCTCGGGCATG
1 TGCTGGGCTCGGGCATG
4019000 TGCT
1 TGCT
4019004 TGTGCCGTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.05, C:0.24, G:0.45, T:0.26
Consensus pattern (17 bp):
TGCTGGGCTCGGGCATG
Found at i:4020123 original size:718 final size:714
Alignment explanation
Indices: 4018294--4020371 Score: 2874
Period size: 718 Copynumber: 2.9 Consensus size: 714
4018284 TTTTCTTCGC
* * * *
4018294 CGGAGCAAT-GTCGGAGAACCTGATCGATGACATTGGGGTTTCGACGATCGGGGGGGTCGGGGGG
1 CGGAGC-ATCGTCGGAGAACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG
** *
4018358 GTGTGCGCACATGATGTGCGATGGCTGCTGGTACTAAGCCCCTATATTGGCCCCCTATCCCTCAT
65 GTGTGCGCACATGATGTGCGATGG-TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
4018423 CAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
129 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
4018488 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTT
194 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * *
4018553 TTTAGCTGAATTTTTTTGTGCATGCAAAAAAAAATGCAACGATCACGTCTGCCAAGTTTGGGGCC
259 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * * *
4018618 AAAAATCCTTCTGAAAAAATTTTAAAAAATC-CTGAACCGCAAAAAGTTTCAAAAATCATCAAAA
324 AAAACTCCTTCCGAAAAAA-TTTAAAAAATCTC-GAACTGCAAAAAGTTTCGAAAATCGTGAAAA
** * *
4018682 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCGTGTGAAGGCTTAAGGGACGATTGTATGAATTT
387 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTT
* * * *
4018747 ACAAGCAATAAAAATTGCATTTGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCC
452 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
4018812 TATCGATCCACAACTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCTCGCCCGCCCGCCCGACT
517 TATCGATCCACAACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CCG-C-
*
4018877 GCCTGCTCGCTCATTTCGTCGGTTGGCTTAGGCATACGGACTTCATTTCAAGTCTAAGATCAGAC
579 -CCT-CTCG----TTTCGTCGGTTGGCTTAGGCATACGGAGTTCA-TTCAAGTCTAAGATCAGAC
* * *
4018942 CATACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGGCTCGGGCATGTGCTTGT
637 CAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGGCTC-GGCATGTGCTTAT
* * *
4019007 GCCGTATTTTTCTTCGT
701 GCCGCA---TCCATCGT
* * * * **
4019024 CGGGGCACCATCACTGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGT
1 CGGAGCATCGT--C-GGAGAACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-
4019089 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
62 GGGGTGTGCGCACATGATGTGCGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
4019154 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTCGCTACCAGT
126 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
4019219 AGCCATTAAAGTGTCTGAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
191 AGCCATTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * * *
4019284 AGTTTTTAGCTG-ATTTTTTTTTGCATGCCAACAAAAACACAAGGATCACGTCTACCTAGCTTGG
255 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
* *
4019348 GGTCAAAACTCCTTTCGAAAAAATTTAAAAAAATCTTC-AACTGCAAAAAGTTTCGAAAATCGTG
320 GGCCAAAACTCCTTCCGAAAAAATTT-AAAAAATC-TCGAACTGCAAAAAGTTTCGAAAATCGTG
*
4019412 AAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGA
383 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGA
* *
4019477 ATTTGCAAGCCATAAAAATGGCATTGGCTTGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
448 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
** ** *
4019542 ACCCTATCGATCCACGGCTTGCGCATCCTATCTCTCTGGCC-AGCATAGTGCCCGCCCGCCCGTC
513 ACCCTATCGATCCACAACTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCG-C
* * * *
4019606 CGCCCTCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGG
576 CGCCCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CAAGTCTAAGATCAGACCAG
* * * *
4019671 ACCGAGGGTTGCAGCAGCACATGCTTGGCTCGGGCATGTGCTGGTG-T-TGCAATTTTCTTCATC
640 ACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGG-GCTCGGC-ATGTGCTT-AT-
**
4019734 GGGGCA-CCATCGT
701 GCCGCATCCATCGT
* * * *
4019747 CGGAGCATCGTCGGAGAACCTGACCGATGGTATTAGGGTTCCGACGATC-AGCGGGCCGGGGGGG
1 CGGAGCATCGTCGGAGAACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGG
*
4019811 TGTGAGCACATGATGTGCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
66 TGTGCGCACATGATGTGCGATG-GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
4019876 AAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTC
130 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * *
4019941 ATTAAAGCGTCTGAAATGGGGATACTTTTTTCAAATGATCACAAAATCTTGGACACTTCGAGTTT
195 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* ** *
4020006 TTAGCTGAATTTTTTTGTGTACACCAAAAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCA
260 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * *
4020071 AAACTCCATCCAAAAAAAGTTTAAAAAATCTCGAACTACAGAAAGCTTCGAAAATCGTGAAAAAT
325 AAACTCCTTCCGAAAAAA-TTTAAAAAATCTCGAACTGCAAAAAGTTTCGAAAATCGTGAAAAAT
*
4020136 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGACTTAAAGGACCATTGTATGAATTTAC
389 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTAC
4020201 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
454 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * *
4020266 TCGATCCATAACTTGCGCATCCCGTCTCTTTGGCCGACGTAGTGCCCACCCG--C-ACG----CT
519 TCGATCCACAACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCGCCCTCT
*
4020324 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTAGTCTAAGAT
584 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCAAGTCTAAGAT
4020372 TAGTTCGAAC
Statistics
Matches: 1206, Mismatches: 121, Indels: 63
0.87 0.09 0.05
Matches are distributed among these distances:
709 11 0.01
710 36 0.03
714 2 0.00
716 1 0.00
717 59 0.05
718 406 0.34
719 13 0.01
720 32 0.03
721 1 0.00
723 13 0.01
724 2 0.00
725 8 0.01
726 90 0.07
727 4 0.00
729 1 0.00
730 10 0.01
731 3 0.00
732 1 0.00
733 47 0.04
734 405 0.34
735 60 0.05
736 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (714 bp):
CGGAGCATCGTCGGAGAACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGG
TGTGCGCACATGATGTGCGATGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
AACTCCTTCCGAAAAAATTTAAAAAATCTCGAACTGCAAAAAGTTTCGAAAATCGTGAAAAATAG
AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
GATCCACAACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCGCCCTCTCG
TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCAAGTCTAAGATCAGACCAGACCGAGGGTTG
CAGCAGCACATGCTGGGCTCGGGCATGTGCTGGGCTCGGCATGTGCTTATGCCGCATCCATCGT
Found at i:4023837 original size:26 final size:26
Alignment explanation
Indices: 4023801--4023853 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4023791 GGTTGATTAG
*
4023801 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
*
4023827 GCATAAGGAGTTCATTGCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
4023853 G
1 G
4023854 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:4026052 original size:884 final size:880
Alignment explanation
Indices: 4021190--4026040 Score: 5648
Period size: 899 Copynumber: 5.5 Consensus size: 880
4021180 GTAGGCTTAG
* * *
4021190 GCATACGGAGTTCATTCCCCA-TCTAAGATTGGACTGGACCGAGGGTTACGGTAGCACATGCTGG
1 GCATACGGAGTTCATT-CCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGG
* * * *
4021254 GCTCGGGCATGTGCTTGTGCCACATTTTTCTTCGCCAGGGCACCATCGCCAGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC---G---C-TCGGAG
* * * * * *
4021319 AACCTGATCGGCAGCATTGGGGTTCCGATGATTGGGGGGGCC-GGGGGGTGTGCACACATGAGGT
123 AACCTGACCGGC-GCATTGGGCTTCCGACGATTCGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * * *
4021383 GTGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTTGAGGACTCA
187 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* **
4021448 CAGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAGTGTCAAAAA
252 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
4021512 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
317 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
4021577 GTGCATGCCAACAAAAATACAAAGGATCACGTCTACCAAGTTTGAGGCCAAAACACCATCCGAAA
382 GTGCATGCCAACAAAAATAC-AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCC----
* * *
4021642 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTTGTC
442 -AA---TAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC
4021707 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
503 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
4021772 CATTGGCA-AGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTGTCGATCCACGGCTT
568 CATTGGCACA-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
4021836 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCGCCCGCCCGCTCGTTTCGTCGATT
632 GCGCATCCCGTCTCTCTGGCCGGCGTAGT----G---C-CCGCCCGCCCGCTCGTTTCGTCGGTT
* * *
4021901 GGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATTA-GATCAGACCGAGGGTTACGGTAGCAG
689 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGA-TAGGACCAGACCGAGGGTTGCGGTAGCAG
* **
4021965 GATCGGCAGCA-TGCAGA---GG----GG--GA--CCCGACTTACGCATCTCGCCCCTCTGGTTG
753 GATCGGCAGCACT-CAGAGGGGGACCCGGCCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCG
* * * **
4022018 ACTGAGCGCCCGCACGCTCATTTCGTGGGTT-TCTTTAGGCATA-TAAGTTCATTCCCAGTCTAA
817 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-TTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
4022081 CCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGATTACGGCAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
4022146 CTCGAGCATGTGCTAGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG---GG-GAACCTGAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGCTCGGAGAACCTGAC
* * * * *
4022207 CGGCGGCATTGGGGTTCC-AGTGATTGGGGGGGCCGGGGGGGTTTGCGCACATGATGTGCAATGG
131 CGGC-GCATTGGGCTTCCGA-CGATTCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
* * *
4022271 GTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCT
194 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
4022336 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGAC
259 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
4022401 ACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-T---TG
324 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
** * * *
4022462 ----CATTAATACAAGGATCAC-TCTACCAAGTTTGGGTCCAAAACTCCTTTC-A-AAAAAAT-T
389 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCAATAAAAAATCT
** * * * * *
4022519 -TTA----AAAAA-TCTT-G--AACCGTAAAAAATTTTCG-AAA--A-TCATCTTGCCATGAAAC
454 CGAACCGCAAAAAGT-TTCGAAAATCATGAAAAA---TAGAAAACGAGTCGTCTTGCCATGAAAC
* * * **
4022571 TTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAACTAGCATTGGCACGCA
515 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATA
* * *
4022636 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCAACCCATCT
580 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
4022701 CACTGACCGGCGTAGTGCCCGCCCGCCACCCTACCCGCTCGTTTCGTCGGTTGTCTTAGGCATAC
645 CTCTGGCCGGCGTAGTGCCCGCCCG--------CCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* ** * * * * *
4022766 GGAGTTCATTCCTAGTCTAAGATAAGACTGGACCAAGGGTTACGGTAGCAGGATCAGCAGTACAC
702 GGAGTTCATTCCTAGTCTAAGATAGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACTC
* * *
4022831 -GAGGGGGACCCGGCCGATCCCCGACTTAAGCATCCCACCCCTCTGGCCGGCTGAGCTCCCGCAC
767 AGAGGGGGACCCGGCCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
4022895 TCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
832 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
4022944 GCATATGGAGTTCACTCCCAGTCTAAGATCGGATTGGACCGAGGGTTACGGTAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * ** ** * *
4023009 CTCGGGCATATGCTGGCGCCATATTTTTCTTCATCGGGGCACCATCGT---T-GGAGCATC-GA-
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGCTCGGAGAACCTGAC
* * **
4023068 C-G-GCATTAGGCTTTCGGTGA-TCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
131 CGGCGCATTGGGCTTCCGACGATTC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* ** *
4023130 TGCTGGTACTTGGCCCTTACATTTTCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
195 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
4023195 TAAAGAGCATTTGAGATTTT-CTAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
260 TAAAGAGCATTTGAGATTTTAC-AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
4023259 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATG
324 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
4023324 CCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCCATCCGAAAAAATTTTA
389 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCC-----AA---TA
* ** *
4023389 AAAAATCTCGAACCGTAAAAAGTTTCGAAAATTGTGAAAAATAGAAAACAAGTCGTCTTGCCATG
446 AAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
4023454 GAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
511 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * *
4023519 CATAGAAATATGAACATGTGCATAAACCCACCTACCACCCTATCGATCCACGCCTTACGTATCCC
576 CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
4023584 GTCTCTCTGGTCGGCGTAGTGCCCGTCCGCCCGCTCGCTCGTT-TTCATTGTTGGCTTAGGCATA
641 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCG-T--TTCGTC--GGTTGGCTTAGGCATA
* * * ** * * *
4023648 TGGAGTTCATTCCTAATCTAAGATTGGACTGGATCGAGGGTTGTC-GTAGTAGGACCGGCAGCAC
701 CGGAGTTCATTCCTAGTCTAAGATAGGACCAGACCGAGGGTTG-CGGTAGCAGGATCGGCAGCAC
* * ** ** ** *
4023712 GCAGAGGGGGACCTGGTTGATCCCCGACTTGTGCATCCCGCCCCTCTAACCGGCTGAGCGTCCGC
765 TCAGAGGGGGACCCGGCCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
4023777 ACGCTCGTTTCGTGGGTTGA-TTAGGCATACGGAGTTCATTCCCAGTCTAA
830 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
4023827 GCATAAGGAGTTCATTGCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
4023892 CTCGGGCATGTGCTGGTGCCGCACTTTTCTTCGTCAGGGCACCATCGTCGGAGCAACGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC---GC-TCG---GAGA
* * ** *
4023957 ACCTAACCGGTGACATTGAGG-TTCTAACGA-TCGGGGGGGCCGGGGGGGTGTGCGCACATGTTG
124 ACCTGACCGGCG-CATTG-GGCTTCCGACGATTC-GGGGGGCCGGGGGGGTGTGCGCACATGATG
* * *
4024020 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTACCCCTCATCAAACCTCGCGAACTC
186 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
4024085 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGTCAGTAGCCATTAAAGTGTCAGAA
251 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
4024150 ATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACAATTCAAGTTTTTAGCTGAATGTTTT
316 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
4024215 TGTGCATGCCGAA-AAAAATACAAGGATCTCGTCTACCAAGTCTGGGGCCAAAACTCCATCCGAA
381 TGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCC---
** * **
4024279 AAAATTCTAAAAAATCTCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCAA
442 --AA---TAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGT
*
4024344 CTTGCCATGAAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATG
502 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
4024408 GCATTGGCACGTAGAAATATGAAGATGTTCCAAAACCCACCTACCACGCTATCGATCCACGGCTT
567 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* ** * *
4024473 GCGCATCCTGTCTCTCTGGCCGGCGTAGT--------GCCCATTCGTTTCGTTGGTTGGTTTAGG
632 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * *
4024530 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCAGCAG
697 CATACGGAGTTCATTCCTAGTCTAAGATAGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAG
* * * ** *
4024595 CACAT-AGAGGGGGAGCCGACCTATCCCCGGTTTACGCATCCCGGCCCTCTGGCCGGCTGAGCGC
762 CAC-TCAGAGGGGGACCCGGCCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * * *
4024659 CCGCACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATTTCCATTCAAA
826 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * *
4024714 GCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGTGGGTTGCGGCAGCACTTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* *
4024779 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCA---TCGC-CGGAGAACCTGAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGCTCGGAGAACCTGAC
** * * *
4024840 AAGCGGAATT-GGCATTTC-AGCGATTGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATG
131 CGGC-GCATTGGGC-TTCCGA-CGATTCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
* * * *
4024902 GATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACACGCACCCC
193 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* **
4024967 CTTAAAGAGCATTTGAGATTTTACAGGCTTG-TCGCCAGTAGTTATTAAAGTGTCTGAAATGGGG
258 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
4025031 ACACTTTTTTGAAATGGTCACAAAATCTTATACACTTCGTGTTTCTAGCTGAATTTTTTTGTGCA
322 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
4025096 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
387 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATC-----CAA---
* * * * *
4025161 TAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATG-GATTGTCTTGGC
444 TAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAG-TCGTCTTGCC
4025225 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
508 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
4025290 GCACATAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
573 GCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * **
4025355 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGCCGGTTGTTTTAGGCATACG
638 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * * * *
4025420 GAGTTCATTCCCAGTCTAAGATAGGACCAGATCAAGGGTTGCAGCAGTAGGATTGGCAGCACTCA
703 GAGTTCATTCCTAGTCTAAGATAGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACTCA
* * *
4025485 GAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCTGCTGAACGCCCGCACG
768 GAGGGGGACCCGGCCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * *
4025550 CTCGTTTCGTGGGTTGACTTAGGCATGCGGGGTTAATTCCCAGTCTAA
833 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * **
4025598 GCATACGGAGATCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
4025663 CTCGAGCATGTGCTGGTGCTGCATTTTTCTTTGCCGGGGCACCATCGTCAGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC---GC-TCG---GAGA
* * * *
4025728 ACCTGACCGGTGCCGTTGGGCTTCCGACGA-TCGGGGGGTC-GGGGGGTGTGCACACATGATGTG
124 ACCTGACCGGCG-CATTGGGCTTCCGACGATTCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* ** *
4025791 TGATGGGTGCTGGTGGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
188 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
4025856 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
253 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
4025921 TGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTG
318 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
4025986 TACAAGCCAA-AAAAACTAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
383 TGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
4026041 TGCCAAAAAA
Statistics
Matches: 3407, Mismatches: 414, Indels: 275
0.83 0.10 0.07
Matches are distributed among these distances:
844 7 0.00
845 1 0.00
848 1 0.00
851 4 0.00
852 232 0.07
853 10 0.00
854 2 0.00
855 5 0.00
856 9 0.00
857 2 0.00
858 228 0.07
859 1 0.00
860 4 0.00
861 1 0.00
862 74 0.02
863 119 0.03
866 16 0.00
867 27 0.01
872 25 0.01
873 10 0.00
874 13 0.00
875 354 0.10
876 121 0.04
877 9 0.00
878 3 0.00
879 12 0.00
880 40 0.01
881 133 0.04
882 74 0.02
883 202 0.06
884 355 0.10
885 1 0.00
886 144 0.04
887 278 0.08
888 2 0.00
889 1 0.00
890 13 0.00
891 98 0.03
892 2 0.00
893 5 0.00
894 256 0.08
895 22 0.01
896 5 0.00
897 1 0.00
898 90 0.03
899 391 0.11
900 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (880 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGCTCGGAGAACCTGAC
CGGCGCATTGGGCTTCCGACGATTCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCAATAAAAAATCTCG
AACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTA
GTCTAAGATAGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACTCAGAGGGGGACCCGG
CCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:4026422 original size:26 final size:25
Alignment explanation
Indices: 4026366--4026422 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 25
4026356 GTGGGTTGAC
** *
4026366 TTAAGCATACGGAGTTCATTTCCAT
1 TTAAGCATACAAAGTTCATTCCCAT
4026391 TCTAAGCATACAAAGTTCATTCCCAGT
1 T-TAAGCATACAAAGTTCATTCCCA-T
4026418 TTAAG
1 TTAAG
4026423 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 1 0.04
26 24 0.89
27 2 0.07
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (25 bp):
TTAAGCATACAAAGTTCATTCCCAT
Found at i:4026900 original size:788 final size:792
Alignment explanation
Indices: 4025315--4026900 Score: 2197
Period size: 788 Copynumber: 2.0 Consensus size: 792
4025305 AAGATGTACC
*
4025315 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
1 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGC
* * * *
4025380 CCGCCCGCCCGCTCGTTTCGCCGGTTGTTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGG
66 CCGCCCGCCCACTCGTTTCACCAGTTGCTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGG
* * *
4025445 ACCAGATCAAGGGTTGCAGCAGTAGGATTGGCAGCACTCAGAGGGGGACCCGGCCGATCCCCGAC
131 ACCAGATCAAGGGTTGCAGCAGCAGGATCGGCAGCACTCAGAAGGGGACCCGGCCGATCCCCGAC
* *
4025510 TTGCGCATCCCGCCCCTCTGGCCTGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
196 TTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCA
* * ** *
4025575 TGCGGGGTTAATTCCCAGTCTAAGCATACGGAGATCATTCCCAGTCTAAGATCAGACCAGATCGA
261 TACGGAGTTAATTCCCAGTCTAAGCATACAAAGATCATTCCCAGTCTAAGATCAGACCAGACCGA
* * * *
4025640 GGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTTGCCGGGGCAC
326 GAGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTT------GCAC
* * * * *
4025705 CATCGTCAGAGCATCGCCAGAGAACCTGACCGGTGCCGTTGGGCTTCCGACGATCGGGGGGTCGG
385 CATAGGCA-ACCATCGCCAGAGAACCTGACCGGCGCCATTGGGCTTCCGACGATCGGGGGGTCGG
**
4025770 GGGGTGTGCACACATGATGTGTGATGGGTGCTGGTGGTTGGCCCTTATATTGGCCCCCTATCCCT
449 GGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
4025835 CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
514 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGCTTGCTGCCAGT
* *
4025900 AGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTTGA
579 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTATACACTTTGA
** *
4025965 GTTTTTAGCTGATTTTTTTTGTACAAGCCAAAAAAACTAAAAGGATCACGTCTACCAAGTTTGGG
644 GTTTCCAGCTGAATTTTTTTGTACAAGCCAAAAAAACTAAAAGGATCACGTCTACCAAGTTTGGG
**
4026030 GCCAAAACTCCTGCCAAAAAAATTTTAAAAAATCCTGAACTGTAAAAAGGTTCAAAAATCACAAA
709 GCCAAAACTCCTGCCAAAAAAATTTTAAAAAATCCTGAACCATAAAAAGGTTCAAAAATCACAAA
4026095 AAATAGAAAACGAGTCGTG
774 AAATAGAAAACGAGTCGTG
* *
4026114 TAAACCCACCTACCGCCCTATCGATCCACGGCTTGCGCATCCCATCTCTCT-GCCGGCGTAGTGC
1 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGC
* * *
4026178 CCGCCCGCCCACTTGTTTCATCAGTTGGCTTT-GGCATACGGAGTTCATTCCCAGTCTAAGATCG
66 CCGCCCGCCCACTCGTTTCACCAGTT-GCTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAG
* * * * * * *
4026242 GACCAG-GCTGAGGGTTGCGGTAGCAGGATCGGCAGCACGT-AGAAGGGGATCCGGCCTATCCTC
130 GACCAGATC-AAGGGTTGCAGCAGCAGGATCGGCAGCAC-TCAGAAGGGGACCCGGCCGATCCCC
* **
4026305 GGCTTGCGCATCCCTTCCCTCT-GCTCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTA
193 GACTTGCGCATCCCGCCCCTCTGGC-CGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * * * * * *
4026369 AGCATACGGAGTTCATTTCCATTCTAAGCATACAAAGTTCATTCCCAGTTTAAGATCGGATCGGA
257 AGCATACGGAGTTAATTCCCAGTCTAAGCATACAAAGATCATTCCCAGTCTAAGATCAGACCAGA
* *
4026434 CCGAGAGTTGCGACAGCACTTGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-TT-CACCA
322 CCGAGAGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTTGCACCA
* * *
4026497 -AGGC-ACCATCGCCGGAGAACCTGACCGGCGGCATT-GGCGTTCC-AGCGATTGGGGGGGTCGG
387 TAGGCAACCATCGCCAGAGAACCTGACCGGCGCCATTGGGC-TTCCGA-CGA-TCGGGGGGTCGG
*** * *
4026558 GGGGTGTTTGCACATGATGTGTGATGGGTGCTGGTACTTGGCCGTTATATTGGTCCCCTATCCCT
449 GGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
4026623 CATCAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAAGCTTGCTGCCAGT
514 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGCTTGCTGCCAGT
* * * *
4026688 AGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTATACACTTTGT
579 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTATACACTTTGA
* * *
4026753 GTTTCCAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGG
644 GTTTCCAGCTGAATTTTTTTGTACAAGCCAA-AAAAACTAAAAGGATCACGTCTACCAAGTTTGG
* * * ***
4026817 GGCCAAAACTCCTGCCGAAAAAATTTTAAAAAATCTTGAACCATAAAAAGTTTCAAAAATCGTGA
708 GGCCAAAACTCCTGCCAAAAAAATTTTAAAAAATCCTGAACCATAAAAAGGTTCAAAAATCACAA
*
4026882 AAAATAGAAAATGAGTCGT
773 AAAATAGAAAACGAGTCGT
4026901 CTTGGCATGA
Statistics
Matches: 695, Mismatches: 84, Indels: 27
0.86 0.10 0.03
Matches are distributed among these distances:
786 4 0.01
787 33 0.05
788 316 0.45
789 7 0.01
790 5 0.01
797 5 0.01
798 271 0.39
799 54 0.08
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.26
Consensus pattern (792 bp):
TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGC
CCGCCCGCCCACTCGTTTCACCAGTTGCTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGG
ACCAGATCAAGGGTTGCAGCAGCAGGATCGGCAGCACTCAGAAGGGGACCCGGCCGATCCCCGAC
TTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCA
TACGGAGTTAATTCCCAGTCTAAGCATACAAAGATCATTCCCAGTCTAAGATCAGACCAGACCGA
GAGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTTGCACCATAGG
CAACCATCGCCAGAGAACCTGACCGGCGCCATTGGGCTTCCGACGATCGGGGGGTCGGGGGGTGT
GCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGCTTGCTGCCAGTAGCCATT
AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTATACACTTTGAGTTTCCA
GCTGAATTTTTTTGTACAAGCCAAAAAAACTAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
CTCCTGCCAAAAAAATTTTAAAAAATCCTGAACCATAAAAAGGTTCAAAAATCACAAAAAATAGA
AAACGAGTCGTG
Found at i:4027909 original size:892 final size:892
Alignment explanation
Indices: 4026114--4030623 Score: 5728
Period size: 884 Copynumber: 5.1 Consensus size: 892
4026104 ACGAGTCGTG
*
4026114 TAAACCCACCTACCGCCCTATCGATCCACGGCTTGCGCATCCCATCTCTCT-GCCGGCGTAGTGC
1 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGC
* * * * *
4026178 CCGCCCGCCCACTTGTTTCATCAGTTGGCTTTGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
66 CCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * *
4026243 ACCAGGCTGAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAAGGGGATCCGGCCTATCCTCGGC
131 ACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGC
* * *
4026308 TTGCGCATCC-CTTCCCTCT-GCTCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAAG
196 TTGCGCATCCAC--CCCTCTGGC-CGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* * * * *
4026371 CATACGGAGTTCATTTCC-ATTCTAAGCATACAAAGTTCATTCCCAGTTTAAGATCGGA-TCGGA
258 CATACGGAGTTCA-TTCCTAGTCTAAGCATACGAAG-TCATTCCCAGTCTAAGATCAGACT-AGA
* * ** * *
4026434 CCGAGAGTTGCGACAGCACTTGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-T--T----
320 CAGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGG
* * * * **
4026492 -CACCA-AG--GCACCATCGCCGGAGAACCTGACCGGCGGCATTGGCGTTCC-AGCGATTGGGGG
385 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCAGGGG
* ** * * *
4026552 GGTCGGGGGGTGTTTGCACATGATGTGTGATGGGTGCTGGTACTTGGCCGTTATATTGGTCCCCT
449 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
4026617 ATCCCTCATCAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAAGCTTGCT
514 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
4026682 GCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTATACA
579 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * **
4026747 CTTTGTGTTTCCAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
644 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
** * **
4026812 TTTGGGGCCAAAACTCCTGCCGAAAAAATTTTAAAAAATCTTGAACCATAAAAAGTTTCAAAAAT
709 TTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAAT
* * *
4026877 CGTGAAAAATAGAAAATGAGTCGTCTTGGCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGT
774 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
4026942 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACC
839 ATGAATTTACAAGCCATAAAAATGGCATTGGCA-TCAGAAATATGAAGATGTGCC
*
4026997 T-AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
1 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGC
* *
4027061 CCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AG
66 CCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-
* * * * *
4027125 GACCAGATTGAGGGTTGCGGCAGAAGGATCGGCAGCAC-TCAGTGGGGGACCCGGCCGATCCCTG
130 GACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGT-AGAGGGGGACCCGGCCGATCCCCG
* **
4027189 GCTTGCGCATCC-CCCCTCTGGCCGGCTGAGTGCCCGCACGCTCATTTAATGGGTTGACTTAGGC
194 GCTTGCGCATCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGC
* * *
4027253 ATACGGGGTTAATTCCTAGTCTAAGCATACGAAGATCATTCCCAGTCTAAGATCAGACTGGACAG
259 ATACGGAGTTCATTCCTAGTCTAAGCATACGAAG-TCATTCCCAGTCTAAGATCAGACTAGACAG
* ** **** * *
4027318 AGGGCTGCGGTAGCACATGCTGGGCTCAAGCATGTGCTGGTATTGCATTTTTCTTTGTCGGGGTA
323 AGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCA
** * *
4027383 CCATCGTCGGAGCATCGCTAGAGAACCTGACCGGTGGCATTGGGCTTCCGACGATCAGGGGGGCC
388 CCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCC
* * * * * *
4027448 AGGGGGTGTGCACACAAGATGTGTGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTGTCC
453 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
4027513 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCA
518 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
4027578 GTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTAACAAAATCTCGTACACTTC
583 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
4027643 GAGTTTTTAGCTGATTTTTTTTGTACAAG-CAACAAAAATAAAAGGATCACGTCTACCAAGTTTG
648 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * *
4027707 GGGCTAAAACT-CTTGTCGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCAT
713 GGGCCAAAACTCCTT-TCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGT
*
4027771 GAAAAATAGAAAACGAGTCGTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
777 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
4027836 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
842 AATTTACAAGCCATAAAAATGGCATTGGCAT-CAGAAATATGAAGATGTGCC
* *
4027888 TAAACCCACCTACCGCCCTATCGATCCACGACTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGC
1 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTG-
* * *
4027953 CCGTTCGCCCTCTCGCCCGCTCGTTTCGTCGGTTAGCTTAGGCAAACGGAGTTCATTCCCAGTCT
65 CC---CG--C-C-CGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *
4028018 AAGATCAGACCAAACAGAGGGTTGTGGCAGTC-GGATCGGCAGCACATAGAGGGGGACCCGGCCG
123 AAGATCAGACCAGACTGAGGGTTGCGGTAG-CAGGATCGGCAGCACGTAGAGGGGGACCCGGCCG
*
4028082 ATCCCAGGCTTGCGCATTCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGT-GG--G
187 ATCCCCGGCTTGCGCA-TCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTG
* * * * *
4028144 ACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA-TAGAGTTCATTCCCAGTCTATGATCAA
251 ACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGA-AG-TCATTCCCAGTCTAAGATCAG
* * * * ** *
4028208 ACTAGACTA-AGGATTACGGTGGCA-GTTTTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT
314 ACTAGAC-AGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT
* ** * ** * **
4028271 CGTCAGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCAACGGCATTGGGGTTTCGGTGAT
378 CGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
* *
4028336 C-GGGAGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGAGCTGGTACTTGGCCCTTATATTG
443 CAGGG-GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
4028400 GCCCCCTATCCCTCATCAAATCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
507 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * *
4028465 GTTTGCTTCCAGTAGCCATTAAAGTGTCTAAAATGGGGAGACTTTTTTCAAATGGTCCCAAAATC
572 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
4028530 TTGTACACTTCGAGTTTTTAGATAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTG
637 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * *
4028595 TACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAACATCCCGAACCACAAAAATTTT
702 TACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTT
** * *
4028660 TGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGA
767 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
4028725 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTCAGAAATATGAAGATGTTCC
832 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TCAGAAATATGAAGATGTGCC
4028787 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGC
1 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGC
* * *
4028852 CCGCCCACCTGCCCGCTCATTTAATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGA
66 CCG--C-CC-GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * *
4028917 TCAGACCAGACTGAGGGTTGCGGTAGCAGGATTGGTAGCACGTAGAGGGGGACCCGACCGATCCC
127 TCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCC
* * * * * * *
4028982 CGACTTGCACATCCAATCGCTCTGGCAGGCTGAGTGCCCGCATGCTCGA-TTCGTGGGTTGACTT
192 CGGCTTGCGCATCC-ACCCCTCTGGCCGGCTGAGCGCCCGCACGCTC-ATTTCGTGGGTTGACTT
*
4029046 AGGCATATGGAGTTCATTCCTAGTCTAAG-AT-CG--G--------A--CT--G---AG-C----
255 AGGCATACGGAGTTCATTCCTAGTCTAAGCATACGAAGTCATTCCCAGTCTAAGATCAGACTAGA
** * * * * *
4029087 C-GAGGGTTGTAGCAGTACATGCTGGGCTTGAGCAAGTGCTGGTGCCACATTTTTCTTCGTCGTG
320 CAGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCG-G
* ** * * *
4029151 GCAACATCCCGGAGCATCGTCGGAGCATCGCTAGAGAACCTGATCGGCGACGTTGGGGTTCCGAC
384 G--GCA---C----CATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
* * * *
4029216 GATCGGGGGGGTCGGGGGCATGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
440 GATCAGGGGGGCCGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
4029281 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTA
504 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * *
4029346 CAGGTTTGCTGCTAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAA
569 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * *
4029411 ATCTTGTACACTTCGAGTTTTTGGGTGAATTTTTTTATGCATACCAACAAAAATACAAGTATCAC
634 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * *
4029476 ATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAG
699 GTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAG
*
4029541 TTTCAAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
764 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * *
4029606 AGACCATTGTATAAACTTACAAGCCATAAAAATGGCATTGTC-TCGCAGAAATATGAAGATGTGC
829 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT--CAGAAATATGAAGATGTGC
4029670 C
892 C
* * * * * * *
4029671 TAAAGCCACCTACCATCCTATCGATCCACAGTTTGCGTATCCCGTCTCTCTGGCCGACGTAGTGC
1 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTG-
* * *
4029736 CCACCCTTCCGCCCGTCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCT
65 -----C--CCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * ** **
4029801 AAGATCAGACCGGACCGAGGGTTACGATAGCAGGATCAGCAGCACACAGAGGGGGATGCGGCCGA
123 AAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCCGA
* * * * * *
4029866 TCCCCGACTTGCACATCCCGCCCCTCTGGCCAGCTGGGCGCCCGCACGCTCGTTTCGTGGGTTGA
188 TCCCCGGCTTGCGCAT-CCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGA
* *
4029931 CTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTCCATTCCCAGTCTAAGATC-GAA
252 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGAAGT-CATTCCCAGTCTAAGATCAG-A
* * *
4029995 CTAGACCA-AGGTTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTACATTTTTCTTC
315 CTAGA-CAGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC
** * * *
4030059 ACCGGGGCACCATCGTTGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGACGAT-
379 GTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
* * *
4030123 AGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGAAGGGTAC-GAGTACTTGGCCCTTATATTGG
444 AGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG-GTACTTGGCCCTTATATTGG
* *
4030187 CCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGG
508 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
4030252 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
573 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
4030317 TGTACACTTGGAGTGTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGAATCACGTCT
638 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
*
4030382 ACCAAGTTT-GGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAAT-CTCGAACCGAAAAAAGTTT
703 ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTT
*
4030445 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGA
767 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
4030510 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTTAGAAATATGAAGATGTGCC
832 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TCAGAAATATGAAGATGTGCC
* * * *
4030572 TAAACCCACCTACCACCCTATCGATCCACAGCTTGCGTATCTCGTCTCTCTG
1 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTG
4030624 ACTGGTGTTG
Statistics
Matches: 3150, Mismatches: 371, Indels: 194
0.85 0.10 0.05
Matches are distributed among these distances:
872 8 0.00
873 37 0.01
874 2 0.00
876 2 0.00
877 1 0.00
878 1 0.00
879 1 0.00
880 4 0.00
881 136 0.04
882 53 0.02
883 188 0.06
884 456 0.14
885 1 0.00
888 182 0.06
889 10 0.00
890 7 0.00
891 199 0.06
892 305 0.10
893 3 0.00
894 6 0.00
895 150 0.05
896 5 0.00
897 5 0.00
898 324 0.10
899 330 0.10
900 123 0.04
901 223 0.07
902 269 0.09
903 14 0.00
904 48 0.02
905 1 0.00
907 1 0.00
908 1 0.00
909 1 0.00
911 2 0.00
913 2 0.00
914 49 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGC
CCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGC
TTGCGCATCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
ACGGAGTTCATTCCTAGTCTAAGCATACGAAGTCATTCCCAGTCTAAGATCAGACTAGACAGAGG
GTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA
TCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCCGGG
GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
CCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAA
AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGGCATCAGAAATATGAAGATGTGCC
Found at i:4028180 original size:26 final size:26
Alignment explanation
Indices: 4028150--4028200 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
4028140 TGGGACTTAG
4028150 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
4028176 GCATATAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
4028201 TGATCAAACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4029977 original size:26 final size:26
Alignment explanation
Indices: 4029936--4029988 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4029926 GTTGACTTAG
* *
4029936 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTCCATTCCCAGTCTAA
*
4029962 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGAAGTCCATTCCCAGTCTAA
4029988 G
1 G
4029989 ATCGAACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTCCATTCCCAGTCTAA
Found at i:4031620 original size:26 final size:26
Alignment explanation
Indices: 4031591--4031667 Score: 118
Period size: 26 Copynumber: 3.0 Consensus size: 26
4031581 GTTAACTTAG
* *
4031591 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
4031617 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
4031643 GCATACCGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
4031668 GAATCAGACC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4032549 original size:26 final size:26
Alignment explanation
Indices: 4032520--4032570 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
4032510 TTGAATTAGG
4032520 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
4032546 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
4032571 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:4035134 original size:877 final size:878
Alignment explanation
Indices: 4031643--4038790 Score: 5314
Period size: 876 Copynumber: 7.9 Consensus size: 878
4031633 CCCAATCTAA
* * * * * *
4031643 GCATACCGAGTTCATTCCCAGTCT-AGAATCAGAC-CAGACCGAGGGTCGTGGCTGCGCATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACTGA-ACCGAGGGTTGCGGCAGCACATGCTG
* ** * * * ** * *
4031706 TGCTTGGGCATGTGCTGGTGCCGCATTTTGCATCGCCAAGGCACCATCGTCGGAGCATCGTCGGA
64 GGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCCTCGGAGCATCGCCGGA
* *
4031771 GAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCACACATGATG
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATG
* * *
4031835 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGACCTCTATCCCTCATCAAACCTCGTGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
4031900 AC-CCTCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGA
258 ACACC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
4031964 AATGGGGACACCTTTTTCAAATGGTCACAAAAT-TCTGTACACTTCGAGTTTTTAGCTGAATTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCT-TGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
4032028 TTTGTGCATGCCAATAAAAATACAAGGATCATGT-TACCAAGTTTGGGGCCAAAACTCCTTCTGA
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * * * *
4032092 AAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCC
451 AAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCG
* *
4032157 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGTGTCCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *** *
4032222 GGTATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCT
581 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCAATCCACAGCT
* * * * *
4032287 TGCGCATCCCGTCCCTCTGGCCA-ACGTAGTGCCCGCCCGCCCGCCAGCCCGCTAGTTTCATCGG
646 TGCGCATCCCGTCTCTCTGGCCAGACGTAGTGCCCGACCGCCCGCCCGACCGCTCGTTTCATCGG
* * * * **
4032351 TTGGCCTAGGCATACGGAGTCCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCA
711 TTGGCGTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTTGCGGCAGCA
* * * *
4032416 GGATCGACAGCACACAGACGGGGACCCGA-TCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCC
776 GGATCGGCAGCACGCAGAGGGGGACCCGACT-GATCCCTGGCTTGCACATCCCGCCCCTCTGGCC
* * *
4032480 GGCCGAGCGCCCGCACGCTCGTTTCATGGGTTGAATTAGGATACGGAGTTCATTCCCAG
840 AGCTGAGCACCCGCACGCTCGTTTCAT-GG--G---T----T---GA---C-TT---AG
* * * * *
4032539 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAATGGTTGCAGCAGCACATG
1 -----GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTGCGGCAGCACATG
* * * *
4032604 CTGGACTCAGGCATGTGCTGGGGCCGCATTTTTCTTCGCCGGGGCACCATCAC-CGGAGTATCGC
61 CTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATC-CTCGGAGCATCGC
* *
4032668 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGTGGGCCGGGGGGTGTGCGCACATG
125 CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATG
*
4032733 ATGTGGGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
190 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
4032797 CTCCCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCT
255 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
4032862 GAAATGGGGACACTTTTTTTAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCCGAATTT
320 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
4032927 TTTTGTGCATGCCAACAAAAATACAAGGATCACATC-AGCCAAGCTTGGGACCAAAACTCCTTCT
385 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CCAAGTTTGGGGCCAAAACTCCTTCC
* * * * * *
4032991 GAAAAAATTTTAAAAAATCCTTAAACCGAAAAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAG
449 GAAAAAATTTTAAAAAATCC-CAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAG
4033056 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
513 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
4033121 AATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCAATCCACA
578 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCAATCCACA
* * * * *
4033186 TCTTGTGCATCCTGTCTCTCTGGCCAGA-GTAGTGCCCGACCGCCTGCCCGACCGTTCGTTTCAT
643 GCTTGCGCATCCCGTCTCTCTGGCCAGACGTAGTGCCCGACCGCCCGCCCGACCGCTCGTTTCAT
* *
4033250 CGTTTGGCGTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA-CAGACTAAGGGTTGCGGTA
708 CGGTTGGCGTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTTGCGGCA
* *
4033314 GCAGGATCGGCAGCACGTAGAGGGGGACCCGACTGATCCTTGGCTTGCACATCCCGCCCCTCTGG
773 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACTGATCCCTGGCTTGCACATCCCGCCCCTCTGG
*
4033379 CCAGCTGAGCACCTGCACGCTCGTTTCATGGGTTGACTTAG
838 CCAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * *
4033420 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACTGAGGGTTGCGACAGCACCTGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTGCGGCAGCACATGCTGGG
* *
4033485 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCCTCGGAGCATCGCCGGAGA
* *
4033550 ACCTGACCGACAGCATTGGGGTTCC-AGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
4033614 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
4033679 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGGCA-TAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
4033743 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTACCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
4033808 TGCATGCCAAGAAATATACAAGGATCACGTCTACCAAGTTT-GGGCCTAAAACTGCTGCCGAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAAAA
** * *
4033872 AATTTTAAAAAATCCCGTACCATAAAAATTTTCAAAAATCATGAAAAA-AAGAAAACGAGTCGTC
454 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAA-AAAACGAGTCGTC
*
4033936 TTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*** * * * * *
4034001 CATTGGCATGTAGAAATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCACGGCCTG
583 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCAATCCACAGCTTG
* * * * *
4034066 CGCATCCCGTCTCTCTAGCC-GACCTAGTGCCTGCCCGCCCGCCCG-CTCGCTCGTTTCGTCGGT
648 CGCATCCCGTCTCTCTGGCCAGACGTAGTGCCCGACCGCCCGCCCGAC-CGCTCGTTTCATCGGT
* ** ** * * * *
4034129 TGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGATTGAGGGTTGTGGCAGTAG
712 TGGCGTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTTGCGGCAGCAG
* * * * ** **
4034194 GATGGGGAACACGCAGAGGGTGACCCGGTTGATCCCTGGCTTGTGCATCCCGCCCCTCTGGCCAG
777 GATCGGCAGCACGCAGAGGGGGACCCGACTGATCCCTGGCTTGCACATCCCGCCCCTCTGGCCAG
* * * *
4034259 TTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAG
842 CTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
* **
4034296 GCATACAGAGTTCATTCCCAGTCTAAGATTGGA-TCGAACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GAACCGAGGGTTGCGGCAGCACATGCTGG
* * *
4034360 GCTCGGGCATGTGCTAGTGCCACATTTTTCTTCGTCGGGGCACCATCACT-GGAGCATCGCCGGA
65 GCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATC-CTCGGAGCATCGCCGGA
* *
4034424 GAACCTAACCGACGGCGTTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTG-GCGCACATGATGT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* *
4034488 CCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
4034553 CACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
4034618 TGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
4034683 GTGCCTGCCAACAAAAATGCAAGGATCACGTCTACCATGTTTTGGGGGCAAAACTCCTTCCGAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCCGAAA
* * *
4034748 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGGGTCGTC
453 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTC
4034813 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
4034878 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCAATCCACATCTTG
583 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCAATCCACAGCTTG
* * * * **
4034943 TGCATCCTGTCTCTCTGGCCAGA-GTAGTGCCCGACCGCCTGCCCGACCGTTCGTTTCATCATTT
648 CGCATCCCGTCTCTCTGGCCAGACGTAGTGCCCGACCGCCCGCCCGACCGCTCGTTTCATCGGTT
* *
4035007 GGCGTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACTAAGGGTTGCGGTAGCAGG
713 GGCGTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTTGCGGCAGCAGG
* *
4035072 ATCGGCAGCACGTAGAGGGGGACCCGACTGATCCTTGGCTTGCACATCCCGCCCCTCTGGCCAGC
778 ATCGGCAGCACGCAGAGGGGGACCCGACTGATCCCTGGCTTGCACATCCCGCCCCTCTGGCCAGC
*
4035137 TGAGCACCTGCACGCTCGTTTCATGGGTTGACTTAG
843 TGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * *
4035173 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACTGAGGGTTGCGGTAGTAGGAT-C--G
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTGCGGCAGCA-CATGCTGG
* * ** ** * *** * **** * *
4035235 G-T-AGCACATAGAGGGGGACCCGC-TCGATCTCCGACTTACGCATCCCACCCCTC--TGC--CG
65 GCTCAG-GCAT-GTGCTGGTGCCACATTTTTCTTCG-CCGGGGCA--CCA-TCCTCGGAGCATCG
* * * * * * ** * * ** *** **
4035293 ACTGAGCACCCG--C-ACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GGAGTTCATTCCCAGTC
124 CCGGAGAACCTGACCGACG-GC-ATT-G-GGGTT--CCGACG-AT-CGGGGGGGC---CGGGGGG
* * ** * * * ** * ** * ** * * *
4035354 TAAGCATACGGAGTTCAT-TCCCAATCTAAGTTC-GG-ACCAGACCGAGTGT-TGTGGCAGCAC-
178 T--G--TGCGCACATGATGT-GCGA--TGGGTGCTGGTACTTGGCC-CTTATAT-TGGC-CCCCT
* *** ** **** * * *
4035414 ATGCGGCGCTCTAGCATGTGCT-G-GTGC-CACATTTTTCTTCACCAGGGCACCATCGCTGGAGC
233 AT-C--C-CTC-ATCA-AACCTCGAGAACTCACA-CCCCCTT-A--A-AG-AGCAT---TTGAG-
** * **** * ** * * * * * *
4035476 A--TCGCCGGAGACCTTGACC-G--GCGTATTAGGGT-TCCGATGATGGGGGGCCGAGGGGTGTG
282 ATTTTACAGGTTTGC-TG-CCAGTAGC-CATTAAAGTGTCTGA-AAT--GGGGAC-A---CTTTT
** * **** * * ** * ** * * ***
4035535 CGCACATGATGTGTGA-TGGGTGCTAGT--ACTTGGCCCTTATATTGGC--CCTCTATCCCT-CA
337 TTCA-A--ATG-GTCACAAAAT-CTTGTACACTTCG-AGTT-T-TTAGCTGAATTTTTTTGTGCA
* * * * *
4035594 T-CAAACCTCAAGAACTCACACCCCTTAAAGAGCATTTGA-GATTTTA-CAGGTTTGCTGCCAGT
394 TGCCAA---CAA-AA---ATA---C---AAG-G-A--TCACG--TCTACCAAGTTTG--G---G-
* * * * * *** * * *
4035656 AGCCATTAAAGT--GTCTGAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTATACACTTC
434 -GCCA--AAACTCCTTCCGAAA-----A-A--ATTTT-AAAAAATC-CCAAACCGTA-A-A----
* *** * * *
4035719 TAGTTTTTAGCTGAATTTTTTTGTGCTTGCCAACAAA-AATAAAAGGA-TCACGTC-TACCAAGT
480 AAG--TTT--C--AA-----AAAT-CATG--AA-AAATAA-AAAACGAGT--CGTCTTGCC-A--
** ** *** *** ** * ** *
4035781 TTGGGGCTAAAACTCCTTTCGAAAAAATTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCG
524 -T---G---AAACT--TCACGTGAAGGCTTAAGGGA-CC---ATTGTATGAA-TTT--ACAA---
** * * * * * *
4035846 TGAAAAATAGAAAATGAGTCCTCTTGC-CA-AGAAACT-TCACG-TGAAGGCTTAAGGTA-CCAT
570 -G--CCATA-AAAATG-G-CAT-TGGCACACAGAAA-TATGAAGATG--TGCCTAA---ACCCA-
** *** * ** * * * *** * * * *
4035906 TGTA-CAAATTAACAAGGTATAAAAATGGCATTG-GCATGCAG-AAATAT-G-AAGATGTACTGA
621 CCTACCACCCT-ACCA---ATCCACA--GC-TTGCGCATCCCGTCTCTCTGGCCAGACGTAGTG-
* * * ** * *
4035966 AACACACTTACCACCCTATCGATCCACGGCTTACGCATCCCGCCTC-TCTGGTCGGCATAGTGCC
678 --C-C-C-GACC-GCC---CG--CC-CGAC---CGC-T--CGTTTCATC-GGTTGGCGTA--G--
*** * * ** ** * * *
4036030 CGCGCGCTCGTTTTGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGG
720 -GCATAC-AG---AGTTCATT--CCCAGTC-TA---AG---A-T--CAGAC-CAGA-CT------
* * * * * *
4036095 ACCGAGGGTTGTGGCAGCAGGATCGACAGCCCGC-GAGAGGGACCCGA-TCGATCCCCGACTTGC
760 A---AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACT-GATCCCTGGCTTGC
* ** ** * *
4036158 GCATCCTACCCCTCTGGCTGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAG
821 ACATCCCGCCCCTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * * *
4036216 GCATACAGAGTTCATTCCCAGTCTAAGATCGGAC-CAGACTGAGGGCTGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGA-ACCGAGGGTTGCGGCAGCACATGCTGG
* * *** * * * * *
4036280 GCTCGGGCATGTGCTGATGGTGCATTTTTCTTCGCCAGGGCACAATCGTCGGAGCATCACCGAAG
65 GCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCCTCGGAGCATCGCCGGAG
* * * *
4036345 AACCTGACCGATGGCATTGGGGTTCCGGCAATCGGGGGTGCCGGGGAGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGTGTGCGCACATGATGT
4036410 GCGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
4036474 CACCCCCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
4036539 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
4036604 GTGCATGCCAAAAAAAATACAAGGATGACGTCTACCAAGTTTTGGACCAAAACTCCTTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
*** * * * *
4036669 AATTTTAAAAAATCTTGAACCATAAAAAGTTTCAAAATTCGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
*
4036734 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGG
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
4036799 ATTGGCACGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCAATCCACAGCTTGC
* ** ** * *** * *
4036864 GCATCCCGTCTCTCTGG-CTGGTGTAGTGCCCTTCCGCCTGCCTTCCCGTTCGTTTCGTCGGTTG
649 GCATCCCGTCTCTCTGGCCAGACGTAGTGCCCGACCGCCCGCCCGACCGCTCGTTTCATCGGTTG
* * * * * * * * ** *
4036928 GCTTCGGCATTCAGATTTCATTCCCAATCTAAGATCGGACCAAACTGAGGGTTGCAACAGCAAGA
714 GCGTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTTGCGGCAGCAGGA
* * * * *** * * * *
4036993 TTGCCAGCATGCAGAGGGGGACCCG-GTCGATCCCCAACTTGCGCATCCCGCCCCTCTGACCGGT
779 TCGGCAGCACGCAGAGGGGGACCCGACT-GATCCCTGGCTTGCACATCCCGCCCCTCTGGCCAGC
* * *
4037057 TTAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
843 TGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
*
4037093 GCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATTGGATCAGATC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG--------A--CT--GA----A-C----C
* * ** * * ** ** *
4037158 GAGGGTTGCGACAGCGCATGCTGGGCTTGGGCATGTGCTAGTGTCGTATTTTTCTTCATCGGGAC
41 GAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGC
* * ** * * ** *
4037223 ACCATCATCGAAGCATCATCGGAGAACCTGACCGACGGCATTAGGGTTTCGGTGATC-AGGGGGC
106 ACCATCCTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC
*
4037287 CGGGGGGGTGTGCGCACATGTTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
171 C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * **
4037352 CCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCAAC
235 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
4037416 CAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAGATGGTCACAAAATCTTGTACACT
300 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
4037481 TCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAATAACAATACAAGGATCACGTCTACCAAGTT
365 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * **
4037546 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAATATCCCGAACCGCAAAAAGGATCAAAAATCG
430 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATC-
* * *
4037611 TTGAAAAATAAAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGGCATAAGGGACCATTGTA
494 ATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* ** *
4037676 TGAATTCACAAGCCATAAATTTGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCT
559 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
*** * * * * * * *
4037741 ACCACCCTATTGATCTACGGATTGCGCATCACGTCTCTCTGGTC-GGCATAGTG--C--CCGCCC
624 ACCACCCTACCAATCCACAGCTTGCGCATCCCGTCTCTCTGGCCAGACGTAGTGCCCGACCGCCC
* * * * * *
4037801 GCCCGTCCGCTTGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGAC
689 GCCCGACCGCTCGTTTCATCGGTTGGCGTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
* * *** * * *
4037866 CGGA-TCGATTATTGCGGCAGCAGGATCGGCAGCAGGCAGAGGGGGACCCGACCGATCCCCGGCT
754 CAGACT-AAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTGATCCCTGGCT
*** * * * *
4037930 TATGCATCCCGCTCCTCTGGCC-GACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAG
818 TGCACATCCCGCCCCTCTGGCCAG-CTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
*
4037991 GCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A--C-----T-G-A----AC
* *
4038056 CGAGGGTTGCGGCAGCACATGCTGGGCTC-GAGCATGTGCTAGTGCCACATTTTTCTTCACCGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCACATTTTTCTTCGCCGGG
* ** * *
4038120 G---CA--CT------ATCGCCCGAGAACCTGACCGGTGGCATTTGGGTTCCGATGATCGGGGGG
104 GCACCATCCTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
*
4038174 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCCT
169 GCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * * *
4038239 GTCCCTCATCAAATCTTGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTATAGGTTTGCT
233 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
** * *
4038304 GCCAGTAGTTATTAAAGTGTCTGGAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACA
298 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
4038369 CTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCGACAAAAATACAAGGATCACGTCTACCAAG
363 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * *
4038433 TTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCAAACTGTAAAAAGTTTGAAAAAT
428 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAAT
* * * *
4038498 TATGAAAAATAGAAAATGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
493 CATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
** ** * *
4038563 ATGAATTTACAAGCCATAAAAATGGCATTTTCATGCAGAAATATGAAGATGTGTCTAAACCCAGC
558 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACC
* * * * * * * *
4038628 TGCCACCCCATCGATCCACGGCTTGCGCATCCCGTGTCTCTGGCCA-ACGTAGTGCCAGCCCG-C
623 TACCACCCTACCAATCCACAGCTTGCGCATCCCGTCTCTCTGGCCAGACGTAGTGCCCGACCGCC
* * * * ** *
4038691 CGTCCGCCCGCTCG-TTCTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCAG
688 CGCCCGACCGCTCGTTTC-ATCGGTTGGCGTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAG
** * * *
4038755 ACTGGACCGAA-GGTTGTGGCAGCAGGATTGGCAGCA
752 ACCAGA-CTAAGGGTTGCGGCAGCAGGATCGGCAGCA
4038791 GGATCGAGCT
Statistics
Matches: 4956, Mismatches: 932, Indels: 728
0.75 0.14 0.11
Matches are distributed among these distances:
871 3 0.00
872 2 0.00
873 3 0.00
874 24 0.00
875 379 0.08
876 721 0.15
877 641 0.13
878 21 0.00
879 2 0.00
881 6 0.00
883 1 0.00
884 2 0.00
885 4 0.00
886 16 0.00
887 13 0.00
888 200 0.04
889 192 0.04
890 118 0.02
891 89 0.02
892 9 0.00
893 4 0.00
894 3 0.00
895 2 0.00
896 8 0.00
897 13 0.00
898 206 0.04
899 74 0.01
900 212 0.04
901 568 0.11
902 564 0.11
903 7 0.00
904 10 0.00
905 4 0.00
906 8 0.00
907 10 0.00
908 22 0.00
909 8 0.00
910 1 0.00
911 2 0.00
912 1 0.00
914 1 0.00
915 3 0.00
917 1 0.00
918 3 0.00
919 1 0.00
920 3 0.00
921 8 0.00
922 6 0.00
923 5 0.00
924 4 0.00
925 8 0.00
926 3 0.00
927 11 0.00
928 9 0.00
930 8 0.00
931 6 0.00
932 3 0.00
933 9 0.00
934 10 0.00
935 7 0.00
936 7 0.00
937 4 0.00
938 7 0.00
939 1 0.00
940 1 0.00
942 3 0.00
944 5 0.00
945 5 0.00
946 3 0.00
948 3 0.00
949 10 0.00
950 2 0.00
951 5 0.00
954 1 0.00
955 1 0.00
956 3 0.00
957 1 0.00
958 5 0.00
959 11 0.00
960 10 0.00
961 12 0.00
962 4 0.00
963 1 0.00
964 3 0.00
965 1 0.00
966 1 0.00
969 5 0.00
970 2 0.00
971 10 0.00
972 3 0.00
974 3 0.00
975 5 0.00
976 5 0.00
978 3 0.00
980 1 0.00
981 1 0.00
982 6 0.00
983 4 0.00
984 7 0.00
985 8 0.00
986 10 0.00
987 11 0.00
988 3 0.00
989 6 0.00
990 10 0.00
992 11 0.00
993 10 0.00
994 3 0.00
995 7 0.00
996 4 0.00
997 2 0.00
998 4 0.00
999 12 0.00
1000 3 0.00
1001 1 0.00
1002 1 0.00
1003 4 0.00
1005 2 0.00
1006 4 0.00
1009 4 0.00
1010 1 0.00
1011 2 0.00
1012 16 0.00
1013 10 0.00
1014 11 0.00
1015 8 0.00
1016 4 0.00
1017 7 0.00
1018 1 0.00
1020 1 0.00
1021 13 0.00
1022 6 0.00
1023 17 0.00
1024 259 0.05
1025 262 0.05
1026 226 0.05
1027 223 0.04
1028 209 0.04
1029 176 0.04
1030 272 0.05
1031 250 0.05
1032 233 0.05
1033 305 0.06
1034 167 0.03
1035 149 0.03
1036 199 0.04
1037 335 0.07
1038 223 0.04
1039 182 0.04
1040 657 0.13
1041 237 0.05
1042 179 0.04
1043 276 0.06
1044 128 0.03
1045 417 0.08
1046 232 0.05
1047 135 0.03
1048 677 0.14
1049 646 0.13
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (878 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTGCGGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCCTCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCAATCCACAGCTTGCGC
ATCCCGTCTCTCTGGCCAGACGTAGTGCCCGACCGCCCGCCCGACCGCTCGTTTCATCGGTTGGC
GTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTTGCGGCAGCAGGATC
GGCAGCACGCAGAGGGGGACCCGACTGATCCCTGGCTTGCACATCCCGCCCCTCTGGCCAGCTGA
GCACCCGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:4035286 original size:159 final size:158
Alignment explanation
Indices: 4035011--4035357 Score: 504
Period size: 159 Copynumber: 2.2 Consensus size: 158
4035001 TCATTTGGCG
*
4035011 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACTAAGGGTTGCGGTAGCAGGATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTAAGGGTTGCGGTAGCAGGATCG
* * * * *
4035076 GCAGCACGTAGAGGGGGACCCGACTGATCCTTGGCTTGCACATCCCGCCCCTCTGGCC-AGCTGA
66 GCAGCACATAGAGGGGGACCCGACTGATCCTCGACTTACACATCCCACCCCTCT-GCCGA-CTGA
*
4035140 GCACCTGCACGCTCGTTTCATGGGTTGACT
129 GCACCCGCACGCTCGTTTCATGGGTTGACT
* * *
4035170 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGAACTGAGGGTTGCGGTAGTAGGATC
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAG-ACTAAGGGTTGCGGTAGCAGGATC
* *
4035234 GGTAGCACATAGAGGGGGACCCG-CTCGAT-CTCCGACTTACGCATCCCACCCCTCTGCCGACTG
65 GGCAGCACATAGAGGGGGACCCGACT-GATCCT-CGACTTACACATCCCACCCCTCTGCCGACTG
*
4035297 AGCACCCGCACGCTCGTTTCGTGGGTTGACT
128 AGCACCCGCACGCTCGTTTCATGGGTTGACT
4035328 TAGGCATACGGAGTTCATTCCCAGTCTAAG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAG
4035358 CATACGGAGT
Statistics
Matches: 171, Mismatches: 13, Indels: 9
0.89 0.07 0.05
Matches are distributed among these distances:
158 71 0.42
159 100 0.58
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (158 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTAAGGGTTGCGGTAGCAGGATCG
GCAGCACATAGAGGGGGACCCGACTGATCCTCGACTTACACATCCCACCCCTCTGCCGACTGAGC
ACCCGCACGCTCGTTTCATGGGTTGACT
Found at i:4035367 original size:26 final size:26
Alignment explanation
Indices: 4035331--4035383 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4035321 GTTGACTTAG
*
4035331 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
4035357 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
4035383 G
1 G
4035384 TTCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:4037144 original size:25 final size:26
Alignment explanation
Indices: 4037093--4037144 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4037083 GTTGACTTAG
*
4037093 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4037119 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4037144 G
1 G
4037145 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4038027 original size:26 final size:26
Alignment explanation
Indices: 4037991--4038043 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4037981 GTTGACTTAG
*
4037991 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4038017 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4038043 G
1 G
4038044 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4039102 original size:11 final size:11
Alignment explanation
Indices: 4039082--4039114 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
4039072 GCCGGGGCAC
4039082 CATCGTCGGAG
1 CATCGTCGGAG
*
4039093 CATTGTCGGAG
1 CATCGTCGGAG
4039104 CATCGTCGGAG
1 CATCGTCGGAG
4039115 AACCTGACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.18, C:0.24, G:0.36, T:0.21
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:4040792 original size:26 final size:26
Alignment explanation
Indices: 4040763--4040815 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4040753 GTTGACTTAG
*
4040763 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4040789 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4040815 G
1 G
4040816 ATTGAACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4040894 original size:902 final size:902
Alignment explanation
Indices: 4036216--4040924 Score: 3864
Period size: 902 Copynumber: 5.2 Consensus size: 902
4036206 GTTGACTTAG
* * * * *
4036216 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGCTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * *
4036281 CTCGGGCATGTGCT-GATGGTGCATTTTTCTTCGCCAGGGCACAATCG-TCGGAGCATCACC-GA
66 CTCGGGCATGTGCTAG-TGCCGCATTTTTCTTCACCGGGGCACCATCGCTCGGAGCATCGCCTG-
* * * * *
4036343 AGAACCTGACCGATGGCATTGGGGTTCCGGCAATCGGGGGTGCCGGGGAGGTGTGCGCACATGAT
129 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
4036408 GTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACT
194 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
4036472 CACACCCCCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGA
259 CACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
4036537 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
4036602 TTGTGCATGCCAAAAAAAATACAAGGATGACGTCTACCAAGTTTTGGACCAAAACTCCTTCCAAA
388 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
* * * *
4036667 AAAATTTTAAAAAATCTTGAACCATAAAAAGTTTCAAAATTCGTGAAAAATAGAAAACGAGTCGT
453 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
4036732 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
4036797 GGATTGGCACGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
583 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* ** * * *
4036862 GCGCATCCCGTCTCTCTGGCTGGTGTAGTGCCCTTCCGCCTGCCTTCCCGTTCGTTTCGTCGGTT
648 GCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTT
* * * * * ** * *** *
4036927 GGCTTCGGCATTCAGATTTCATTCCCAATCTAAGATCGGACCAAACTGAGGGTTGCAACAGCAAG
713 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGG
* * * * * * * *
4036992 ATTGCCAGCATGCAGAGGGGGACCCGGTCGATCCCCAACTTGCGCATCCCGCCCCTCTGACCGGT
778 ATTGGCAGCATGCAGAGGTGGACCCGG-CTATCCCCGACTTGTGCATCCTG-CCCTCTGGCCGGC
* *
4037057 TTAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
841 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
4037119 GCATACGGAGTTCATT-CCAGTCTAAGATTGGA-TCAGATCGAGGGTTGCGACAGCGCATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-AGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * * * ** *
4037182 GCTTGGGCATGTGCTAGTGTCGTATTTTTCTTCATCGGGACACCATC-ATCGAAGCATCATCGGA
65 GCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCACCGGGGCACCATCGCTCGGAGCATCGCCTGA
* * ** * *
4037246 GAACCTGACCGACGGCATTAGGGTTTCGGTGATC-AGGGGGCCGGGGGGGTGTGCGCACATGTTG
130 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
*
4037310 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
195 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* ** *
4037375 ACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCAACCAGTAGCCATTAAAGTGTTTGAAA
260 ACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
4037440 TGGGGACACTTTTTTCAGATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
4037505 GTGCATGCCAATAACAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
390 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * ** * * *
4037570 AATTTTAAAATATCCCGAACCGCAAAAAGGATCAAAAATCGTTGAAAAATAAAAAACTAGTCGTC
455 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC-ATGAAAAATAGAAAACGAGTCGTC
* * **
4037635 TTGCCATGAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTCACAAGCCATAAATTTGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
4037700 CATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATTGATCTACGGATTG
584 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
4037765 CGCATCACGTCTCTCTGG-TCGGCATAGTGCCCGCCCGCCCG---T-CCGCTTGTTTCGTCAGTT
649 CGCATCCCGTCTCTCTGGCT-GGCGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTT
* * *** *
4037825 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGGATCGATTATTGCGGCAGCAGG
713 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGG
* * * * * * * * *
4037890 ATCGGCAGCAGGCAGAGGGGGACCCGACCGATCCCCGGCTTATGCATCCCGCTCCTCTGGCCGAC
778 ATTGGCAGCATGCAGAGGTGGACCCG-GCTATCCCCGACTTGTGCATCCTGC-CCTCTGGCCGGC
* *
4037955 TGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
841 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
4038017 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
4038082 CTCGAGCATGTGCTAGTGCCACATTTTTCTTCACCGGGG---CA---CT------ATCGCCCGAG
66 CTCGGGCATGTGCTAGTGCCGCATTTTTCTTCACCGGGGCACCATCGCTCGGAGCATCGCCTGAG
** * *
4038135 AACCTGACCGGTGGCATTTGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
131 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * *
4038200 GCGATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAATCTTGAGAACTCA
196 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* ** *
4038265 CACCACCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGTTATTAAAGTGTCTGGAA
261 CACC-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
4038330 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
4038394 GTGCATGCCGACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
390 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * * *
4038459 AATTTTAAAAAATCTCAAACTGTAAAAAGTTTGAAAAATTATGAAAAATAGAAAATGAGTCGTCT
455 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
4038524 TGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * * * *
4038589 ATTTTCATGCAGAAATATGAAGATGTGTCTAAACCCAGCTGCCACCCCATCGATCCACGGCTTGC
585 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *** * * *
4038654 GCATCCCGTGTCTCTGGCCAACGTAGTGCCAGCCCG-CCGTCCGCCCGCTCG-TTCTGTCGGTTG
650 GCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTC-GTCGGTTG
** * * *
4038717 GCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAAGGTTGTGGCAGCAGGA
714 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGA
* * * * * * ** * ** * *
4038782 TTGGCAGCA-GGATCGAGCTGGACCAAGGGT-T--ACGAC-AGTATATGCTGGGCTCGGGCATGT
779 TTGGCAGCATGCA--GAGGTGGACC-CGGCTATCCCCGACTTGTGCATCCTGCCCTCTGGC-CG-
* * ** ** * * ** * * *
4038842 GTTG-GTG--C-CACTTTTTTCTTCGT-CGTGGCAC--AATCA-CCAGAG--CATTGCCAGAGAA
839 GCTGAGCGCCCGCACGCTCGT-TTCGTGGGTTG-ACTTAGGCATACGGAGTTCATT-CC-CAG--
*
4038897 CCTAA
898 TCTAA
* * ** * * *
4038902 -C-TGACGGCGTT-AGGGTT-CC-GGC---GATCGG--GGGGCCGGGGGGGTGTGC-GCACGCTC
1 GCAT-ACGGAGTTCA---TTCCCAGTCTAAGATCGGACTAGACC--GAGGGT-TGCGGCA-GCAC
* * * * * * * * ** ** * ** *
4038956 GTTTCGTGGG-T-TGACTTATGC-A-TACAAAGTTCATTCCCAGTCTAAAATCAGATCGAACCGA
58 -ATGC-TGGGCTCGGGCATGTGCTAGTGC--CG--CATT---TTTCT-TCA-CCG-GGGCACC-A
** * * * * * * ** * ****
4039017 GGGTTGCGGCAGTGCATGCTGGGCTTAG-GCATGCACTGGTGTCGAATTTTTCTTCGCCGGGGCA
110 TCGCT-CGG-A--GCAT-C--GCCTGAGAACCTG-ACCGACG--GCATTGGGGTT--CC---G-A
* ** * * * ** * * * * *
4039081 CCATCGTCGGAGCATTGTCGGAGCATCGTCGGAGAACCTGACCG-GCGACATTAGGGT-TTCGGT
159 CGATCGGGGGGGC--CG--GGGGGGT-GT--GCGCACATGA-TGTGCG--A-T-GGGTGCT-GGT
** * ***** * * *** ***** * ** * *
4039144 GATCGGGGGGCC-GGGGGTGTGCGCAC-ATGTTGTGCGATGGGTGCT-G-GTACTTGGC-CCTCA
211 -A-C-TTGGCCCTTATATTG-GCCCCCTAT-CCCT-C-ATCAAACCTCGAGAAC-TCACACCCCT
** *** * * * **** * * * * ** *
4039204 TATTG-GCCCCCT-ATCA-CTCATCAAACCT-CGAGAACTCA-CACCCGCTTAAAAAG-CATTTA
268 TAAAGAG-CATTTGA-GATTTTA-CAGGTTTGC-TG--C-CAGTAGCC-ATTAAAGTGTC--TGA
*** * * * * * * * ** * ** * * *** **
4039263 AGAT-TTCACAGGTTTGCTACCAGTAGCCATTAAA--GTGT-CTGAAATGGGGACACTTTTTTCA
323 A-ATGGGGACA-CTTT-TTTCAAATGGTCACAAAATCTTGTAC--ACTTCGAG-TTTTTAG--C-
* *** * **
4039324 AATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAA
379 --T-G------AAT-TT-T----TT--TGTGCAT-GC-CAA-------A---A--AAAA------
* * * *
4039389 TACAAGGATCCCCTCTACCCAA-TTCGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTG
407 TACAAGGATCACGTCTA-CCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTC
* ** * * *
4039453 GAACCGTAAAAAGTTTGAAAAATTGTGAAAAATAGAAAATGGGTCGTCTTGCCTTGAAACTTCAC
471 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
4039518 GTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGTCATGCAGAAAT
536 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
* * *
4039583 ATAAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCGTATCCCGTCTCTCTG
601 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * *
4039648 G-TCGACGTAGTGCCCGCTCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
666 GCT-GGCGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAG
* * ** * * * * **
4039712 TTCATTCCCAGTCTAAGATCGGACTGGATTGAGGGTTGTGGTAGCAAGATCGGTAGCACACAGA-
730 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATTGGCAGCATGCAGAG
* * * * * *
4039776 GTGGGGCCCAGCTGATCTCTGACTTGCGCAT-CTCGCCCCTCTGGCCGGCTGAGCGCCCGTACGC
795 GT-GGACCCGGCT-ATCCCCGACTTGTGCATCCT-G-CCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * * *
4039840 TCATTTCGTGAGTTGACTTAGGCATATGGATTTCATTGCCAGTCTAA
856 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
4039887 GCTTACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
* **
4039952 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCGCCTGAG
66 CTCGGGCATGTGCTAGTGCCGCATTTTTCTTCACCGGGGCACCATCGCTCGGAGCATCGCCTGAG
*
4040016 AACCTAACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGT-TGCGCACATGATGT
131 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
4040080 GCGATGGGTGCTAGTACTTGGCCCTTATATTGTCCCCCTAT-CCTCATCAAACCTCGAGAACTCA
196 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
4040144 CACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
261 CAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
4040209 TGGGGACATTTTTTTCAAATGGTCACAAAGTCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
4040274 GTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGCGCCAAAAATCCTTCCTAAAA
390 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* *
4040339 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
455 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
4040404 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
4040468 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCGCGGCTTAC
585 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
4040533 GCATCCCGTCTCTCTGGCTGGCGTAGCGCCCGCCCGCCCGCCCTCCCGCTCGTTTTCGTCAGTTG
650 GCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCTCCCGCTCG-TTTCGTCGGTTG
** * *
4040598 GCTTAGGCATACCTAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGA
714 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGA
* * * * *
4040663 TTGACAGCATGCAGAGGTAGACCCGGTCTCTCCCCGGCTTGTGCATCCTGCCCTTCTGGTCGGCT
779 TTGGCAGCATGCAGAGGTGGACCCGG-CTATCCCCGACTTGTGCATCCTGCCC-TCTGGCCGGCT
* * * *
4040728 CAACGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATGCGGAGTTCATTCCCAGTCTAA
842 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
4040789 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTAGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
4040854 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCAC-CAGAGCATCGTCAGAG
66 CTCGGGCATGTGCTAGTGCCGCATTTTTCTTCACCGGGGCACCATCGCTCGGAGCATCGCCTGAG
4040918 AACCTGA
131 AACCTGA
4040925 ATTTTTTAGT
Statistics
Matches: 2950, Mismatches: 634, Indels: 445
0.73 0.16 0.11
Matches are distributed among these distances:
879 4 0.00
880 2 0.00
881 18 0.01
882 13 0.00
883 11 0.00
884 21 0.01
885 14 0.00
886 10 0.00
887 12 0.00
888 206 0.07
889 199 0.07
890 114 0.04
891 77 0.03
892 8 0.00
893 2 0.00
894 2 0.00
896 2 0.00
897 2 0.00
898 189 0.06
899 73 0.02
900 1 0.00
901 386 0.13
902 748 0.25
903 23 0.01
907 2 0.00
908 3 0.00
909 3 0.00
910 11 0.00
912 7 0.00
913 1 0.00
914 2 0.00
917 1 0.00
918 9 0.00
920 3 0.00
921 2 0.00
922 7 0.00
923 2 0.00
924 2 0.00
925 10 0.00
926 1 0.00
927 1 0.00
928 2 0.00
929 9 0.00
930 9 0.00
931 14 0.00
932 14 0.00
933 7 0.00
934 13 0.00
935 8 0.00
936 10 0.00
937 13 0.00
939 1 0.00
940 1 0.00
942 12 0.00
943 10 0.00
944 9 0.00
945 13 0.00
946 9 0.00
947 5 0.00
948 19 0.01
949 12 0.00
950 1 0.00
951 8 0.00
952 3 0.00
953 1 0.00
954 1 0.00
955 10 0.00
956 2 0.00
957 1 0.00
958 3 0.00
959 6 0.00
960 1 0.00
961 1 0.00
963 10 0.00
964 1 0.00
967 2 0.00
969 6 0.00
970 1 0.00
971 9 0.00
972 4 0.00
973 1 0.00
974 4 0.00
976 1 0.00
977 5 0.00
978 259 0.09
979 93 0.03
980 8 0.00
981 9 0.00
982 7 0.00
983 9 0.00
984 10 0.00
985 13 0.00
986 21 0.01
987 9 0.00
988 14 0.00
989 18 0.01
990 2 0.00
991 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTAGTGCCGCATTTTTCTTCACCGGGGCACCATCGCTCGGAGCATCGCCTGAG
AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGC
TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATT
GGCAGCATGCAGAGGTGGACCCGGCTATCCCCGACTTGTGCATCCTGCCCTCTGGCCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:4041465 original size:26 final size:26
Alignment explanation
Indices: 4041426--4041476 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
4041416 TTGACTTAGG
* *
4041426 TATACGAAGTTCATTCCCTGTCTAAA
1 TATACGAAGCTCATTCCCAGTCTAAA
*
4041452 TATACGGAGCTCATTCCCAGTCTAA
1 TATACGAAGCTCATTCCCAGTCTAA
4041477 GATCAGACTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (26 bp):
TATACGAAGCTCATTCCCAGTCTAAA
Found at i:4041572 original size:662 final size:666
Alignment explanation
Indices: 4040255--4041586 Score: 1753
Period size: 662 Copynumber: 2.0 Consensus size: 666
4040245 ACACTTCGAG
4040255 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGCG
1 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGCG
* * *
4040320 CCAAAAATCCTTCCTAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAA
66 CCAAAAATCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATCAAA
* * *
4040385 AATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
131 AATAGAAAACGAGTCATCCTGCCATGAAACTTCACGTCAAGGCTTAAAGGACCATTGTATGAATT
*
4040450 TACAAGCCATAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
196 TACAAGCCATAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
4040515 TATTGATCCGCGGCTTACGCATCCCGTCTCTCTGGCTGGCGTAGCGCCCGCCCGCCCGCCCTCCC
261 TATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTA-----CG-CCGCCCGCCCTCCC
* * *
4040580 GCTCGTTTTCGTCAGTTGGCTTAGGCATACCTAGTTCATTCCCAATCTAAGATCAGACCAGACCG
320 GCTCGTTTTCGTCAGTTGGCTCAGGCATACCGAGTTCATTCCCAATCTAAGATCAGACCAGACCA
* ** * * ** * **
4040645 AGGGTTGTGGCAGCAGGATTGACAGCATGCAGAGGTAGACCCGGTCTCTCCCCGGCTTGTGCATC
385 AGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGAGACCCGGCCAATCCCCGACTTACGCATC
* * * * * * *
4040710 CTGCCCTTCTGGTCGGCTCAACGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATGCGGAGTT
450 CAGCCCCTCTGGTCAGCTCAACACCCGCACGCTCATTCCGTGGGTTGACTTAGGCATACGAAGTT
* * * *
4040775 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGAACTAGACCGAGGGTTACGG
515 CATTCCCAGTCTAAACATACGGAGCTCATTCCCAGTCTAAGATAGAACTAGACAGAGGGTTACGG
* *
4040840 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCAG
580 CAGCAAATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCAG
*
4040905 AGCATCGTCAGAGAACCTGAAT
645 AGCATCATCAGAGAACCTGAAT
* * ** *
4040927 TTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG
1 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGCG
* * * * *
4040992 CCAAAACTCTTTTCGAAAAAATTTAAAAAAATCTCGGACCGTAAAAAGTTTTC-AAAATCATCAA
66 CCAAAAATCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAG-TTTCAAAAATCATCAA
* * *
4041056 AAATAGAAAACGATTCGTCCTGTCATGAAACTTCACGTCAAGGCTTAAAGGACCATTGTATGAAT
130 AAATAGAAAACGAGTCATCCTGCCATGAAACTTCACGTCAAGGCTTAAAGGACCATTGTATGAAT
**
4041121 TTACAAGCCATAAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
195 TTACAAGCCAT-AAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * * * *
4041186 CCTATCGATCCACGGGTT-TGCATCTCGTCTCTCTTGCCGGCGTA-G-TGCCTG-CCTGCCGCTC
259 CCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTACGCCGCCCGCCCTCCCGCTC
** * * * *
4041247 G-TTTCGTC-GATTGGCTCAGGCATATGGAGTTCATTCCCAGTCTAAGATCCGACCGGGCCAAGG
324 GTTTTCGTCAG-TTGGCTCAGGCATACCGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGG
* * ** *
4041310 GTTGTGGTAGTAGGATCGGTAGCACACAGAGGGGGACCCGGCCAATCCCCGACTTACGCATCCAG
388 GTTGTGGCAGCAGGATCGACAGCACACAGAGGGAGACCCGGCCAATCCCCGACTTACGCATCCAG
* * * * *
4041375 CCCCTCTGGTCAGCTGAGCACCCGCATGCTCATTTCGTGGGTTGACTTAGGTATACGAAGTTCAT
453 CCCCTCTGGTCAGCTCAACACCCGCACGCTCATTCCGTGGGTTGACTTAGGCATACGAAGTTCAT
* * * *
4041440 TCCCTGTCTAAATATACGGAGCTCATTCCCAGTCTAAGATCAG-ACTAGATAGAGGGTTGCGGCA
518 TCCCAGTCTAAACATACGGAGCTCATTCCCAGTCTAAGAT-AGAACTAGACAGAGGGTTACGGCA
* * * *
4041504 GCAAATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCATCATCGGAG
582 GCAAATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCAGAG
* *
4041569 CATCATCGGAGAATCTGA
647 CATCATCAGAGAACCTGA
4041587 CCGGCGGCAT
Statistics
Matches: 571, Mismatches: 85, Indels: 18
0.85 0.13 0.03
Matches are distributed among these distances:
661 1 0.00
662 282 0.49
663 11 0.02
664 4 0.01
666 1 0.00
672 203 0.36
673 69 0.12
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (666 bp):
TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGCG
CCAAAAATCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATCAAA
AATAGAAAACGAGTCATCCTGCCATGAAACTTCACGTCAAGGCTTAAAGGACCATTGTATGAATT
TACAAGCCATAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTACGCCGCCCGCCCTCCCGCTCGT
TTTCGTCAGTTGGCTCAGGCATACCGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTT
GTGGCAGCAGGATCGACAGCACACAGAGGGAGACCCGGCCAATCCCCGACTTACGCATCCAGCCC
CTCTGGTCAGCTCAACACCCGCACGCTCATTCCGTGGGTTGACTTAGGCATACGAAGTTCATTCC
CAGTCTAAACATACGGAGCTCATTCCCAGTCTAAGATAGAACTAGACAGAGGGTTACGGCAGCAA
ATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCAGAGCATC
ATCAGAGAACCTGAAT
Found at i:4044107 original size:26 final size:26
Alignment explanation
Indices: 4044071--4044123 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4044061 GTTGACTTAG
4044071 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
*
4044097 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
4044123 G
1 G
4044124 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:4044277 original size:904 final size:899
Alignment explanation
Indices: 4042252--4045564 Score: 4340
Period size: 903 Copynumber: 3.7 Consensus size: 899
4042242 CGCTTGTTTC
* * *
4042252 GTGGGTTGACTTAGGCATTCGGAGTTCATTCCCAGTCTAACCATACGAAGTTCATTCCCAGTCTA
1 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * * * * *
4042317 AGTTCGGATCGGACCGAGGGTTACGG-CAGCACATACTGGGCTCAGGCAAGTGTTGGTGCCACAT
66 AGATCGGACCGGACCGAGGGTTGCGGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * *
4042381 TTTTCTTC-ACTGAGGCACCATCATCGGAGCATCGCCGGAGAACCTGATCGACGGCATTGGGGTT
131 TTTTCTTCGTC-GAGGCACCATCATCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTT
* * *
4042445 CCGACGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGTGATTGGTTCTGGTACTT-GCCCT
195 CCGACGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
4042509 TATATTGGCCCCCTATCTCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
260 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
*
4042574 TTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
325 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * ** *
4042639 CAAAATCTTGTACACTTTGAGTTTTAAGCTGAAGGTTTTTGTGCATGCCAACAAAAATAGAAGGA
390 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * *
4042704 TCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAA
455 TCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGCAA
* *
4042769 AAAGTTTCCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCATGTGAAGGCT
520 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCT
4042834 TAAGGGACCATTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT
585 TAAGGGACCA-TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT
* * *
4042899 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCAGTCTCTCTGGCCGACAT
649 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGT
*
4042964 TGTGCCCACCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
714 TGTGCCCGCCCGCCCGCCCGCCCGCT-GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* ** * *
4043029 AGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCAAGATCAACAGCACATAGATGGGGACCTG
778 AGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGC-AGATCAGCAGCACATAGA-GGGGACCCG
* * * * * * * *
4043094 GCCGATCCCTGGCTTGCGTATCCCACCCCTCTGGCCTGCTGAGCGCCTGCACGCTCGTTTT
841 GTCAATCCC-GACTTTCGCATCCCACCCCTCTGGCCAGCTGAGCGCCCGCACG-TCATTTT
** ** * ** *
4043155 GTGAATTGACTTAGGCATACAAAGTTCATTCCCAATCTAAGCATACGGAGTTTGTTCTCAGTCTA
1 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* ** * * * *
4043220 AGATCGGACTGGACCGAGGGTT-AAGACAGCACATGCTAGTCTCGGGCATGTGCTGGTGCTGTAT
66 AGATCGGACCGGACCGAGGGTTGCGGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * * *
4043284 TTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACTTGACCGGCGACATTGTGGTTC
131 TTTTCTTCGTCGAGGCACCATCATCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTC
* * *
4043349 CGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTT
196 CGACGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* *
4043414 ATATTGGCCCCCTATCCCTCATCAAACGTCGAGAACTCACACCCCGTTAAAGAGCATTTGAGATT
261 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
4043479 TTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAC
326 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * * *
4043544 AAAATCTTGTACACTTCCATTTTTTAGCCGAATTCTTTTGTGCATGCCAACAAAAATACAAGGAT
391 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * *
4043609 CGTATCTACCAACTTTGGGGCCAAAAATCCTT-TCGAAAAAATTTTAAAAAATCTCGAACCGCAG
456 CATGTCTACCAAGTTTGGGGCCAAAAATCCTTCT-GAAAAAATTTTAAAAAATCTCGAACCGCAA
* * ** *
4043673 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATTTGAACTCC
520 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCT
*
4043738 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATG
585 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG
* * * *
4043803 TGGCTAAACCCGCCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTC-CACCTGACCGGCGT
650 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTC-TCTGGCCGGCGT
* * * * * * *
4043867 AGTGCCCGCCCACCCGTCCACCCGCTGTTTTCGTCAGTTGGCTTAGGCATGCGGAGTTCATTCCC
714 TGTGCCCGCCCGCCCGCCCGCCCGCTG-TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * ** * *
4043932 AGTCTAAAATTGGACCAGACGGAGGGTTGCCACAGCAGATCAGTAGCACATAGAGGGGGACCCGA
778 AGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGATCAGCAGCACATAGA-GGGGACCCGG
* * * *
4043997 TCAATCCTCGACTTTCACATCCCTCCCCTCTGGCCGGTTGAGCGCCCGCACAGTCATTTT
842 TCAATCC-CGACTTTCGCATCCCACCCCTCTGGCCAGCTGAGCGCCCGCAC-GTCATTTT
*
4044057 GTGGGTTGACTTAGGCATACGGAGTTCATACCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
1 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * *
4044122 AGATTGGACCGGACCAAGGGTTGCGGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
66 AGATCGGACCGGACCGAGGGTTGCGGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * **
4044187 TTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGTTGAACCTGACCGGCGGCATTGGGGTTC
131 TTTTCTTCGTCGAGGCACCATCATCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTC
* * * * *
4044252 CGACGATCGAGGGGGCCGTGGGGGTGTTCGCACATGATGGGCGATGGGTGCTGGTACTTGGCACT
196 CGACGATCGGGGGGGCCG-GGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
4044317 TATATTGGCCCCCTGTCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
260 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
*
4044382 TTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
325 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
*
4044447 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT-CATGCCAACAAAAATACAAGGA
390 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
*
4044511 TCACT-TCTACCAAGTTTGGGGCCAAAACGT-CTTCTGAAAAAATTTTAAAAAATCTCGAACCGC
455 TCA-TGTCTACCAAGTTTGGGGCCAAAA-ATCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGC
** *
4044574 AAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
518 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGG
* * ***
4044639 CTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATAGCATTGGCATGTAGAAATATGAAGA
583 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGA
* * * * *
4044704 TGTGCCTAAACCCACCTAGCACCCTATCGATCCATGGCTTGCT-TATCTCGTCTCTCTGGCCAAC
648 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG-TGCATCCCGTCTCTCTGGCC--G
* * * * *
4044768 GCAGTTTTCGCCCGGCTGTCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTC
710 GC-GTTGT-GCCCGCCCGCCCGCCCGCCCGCT-GTTTCATCGGTTGGCTTAGGCATACGGAGTTC
* * ** * * **
4044833 ATTCCCAGTCTAAGATCGGATCGGATTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGG
772 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA-GATCAGCAGCACATAGAGGGG
* * * *
4044898 ACCCGGTCAATCCCCGACTTGT-GCATCCCACCCCTCTGGCCAGCTCAGTGCCCGTACG-CTTGT
836 ACCCGGTCAAT-CCCGACTT-TCGCATCCCACCCCTCTGGCCAGCTGAGCGCCCGCACGTCAT-T
4044961 TT
898 TT
* * * * * *
4044963 CATTGGTTGACTTAGGCAAACGGAGTTCATTTCCAGTCTAAGCGTACGGAGTTCATTCCCAGTCG
1 -GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * *
4045028 AAGATCAGATCGGACCGAGGGTTGC-GACAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCGTA
65 AAGATCGGACCGGACCGAGGGTTGCGGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * ** ** *
4045092 TTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCACCGGAGAACCTGATCGGTAGCATTGGAATA
130 TTTTTCTTCGTCGAGGCACCATCATCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTT
* *
4045157 CCGATGAT-GGGAGGGG-CTGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCC
195 CCGACGATCGGG-GGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGG-CC
* *
4045220 CTATATTGGCCCCTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCACACCCCTTTAAA
258 C-----T------TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
4045285 GAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
312 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * * *
4045350 TTTCAAATGGTCCCAAAATC-TGTACACTTCAATTTTTTAGCGGTATTTTTTTGTGCATGCCAAC
377 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
4045414 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-AAAAAATTTAAAAAAA
442 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAA
* ** * * * *
4045478 TC-CTAAAAGGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATTAAAC
507 TCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
**
4045542 TTCACATGAAGGCTTAAGGGACC
571 TTCATGTGAAGGCTTAAGGGACC
4045565 CACCTACCAC
Statistics
Matches: 2094, Mismatches: 274, Indels: 72
0.86 0.11 0.03
Matches are distributed among these distances:
902 147 0.07
903 751 0.36
904 555 0.27
905 9 0.00
906 106 0.05
907 205 0.10
908 16 0.01
910 1 0.00
914 1 0.00
915 121 0.06
916 182 0.09
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (899 bp):
GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
AGATCGGACCGGACCGAGGGTTGCGGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
TTTTCTTCGTCGAGGCACCATCATCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTC
CGACGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
CATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGCAAA
AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTT
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTTG
TGCCCGCCCGCCCGCCCGCCCGCTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
CTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGATCAGCAGCACATAGAGGGGACCCGGTCAA
TCCCGACTTTCGCATCCCACCCCTCTGGCCAGCTGAGCGCCCGCACGTCATTTT
Found at i:4045248 original size:13 final size:12
Alignment explanation
Indices: 4045213--4045244 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
4045203 GTGCTGGTAC
4045213 TTGGCCCCTATA
1 TTGGCCCCTATA
4045225 TTGGCCCCTATA
1 TTGGCCCCTATA
4045237 TTGGCCCC
1 TTGGCCCC
4045245 CTATCCCTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.12, C:0.38, G:0.19, T:0.31
Consensus pattern (12 bp):
TTGGCCCCTATA
Found at i:4045860 original size:26 final size:26
Alignment explanation
Indices: 4045824--4045875 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
4045814 TTGACTTAGT
4045824 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
* *
4045850 CATACGGAGTTCATTGCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
4045876 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:4047915 original size:58 final size:58
Alignment explanation
Indices: 4047642--4048043 Score: 504
Period size: 57 Copynumber: 6.8 Consensus size: 58
4047632 TCTTGTGTAG
* * ** *
4047642 GGAAAATTGATACTTTCAAATTTTCCCTAAAAATAAATTTTT-GAAATTTATTTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTATTTTTAA
* * *
4047699 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTGAAAATTTATTTTTAC
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTATTTTTAA
* *
4047756 GAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAA-TTT-ATTTTTAA
* *
4047816 GGAAAATTGATACTTTCAACTTTTTCCCTAAAAATA-ATTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAAC-TTTTCCCCAAAAATATTTTTTTGGAAATTTATTTTTAA
* * **
4047874 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTATTTCAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTATTTTTAA
* * *
4047932 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA-------TATTTTTTTGGAAATTTATTTTTAA
*
4047997 GGAAAATGGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGGAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTGGAA
4048044 CTTTTGATTT
Statistics
Matches: 300, Mismatches: 31, Indels: 26
0.84 0.09 0.07
Matches are distributed among these distances:
56 5 0.02
57 93 0.31
58 87 0.29
59 16 0.05
60 35 0.12
61 14 0.05
65 50 0.17
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.44
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTATTTTTAA
Found at i:4048061 original size:65 final size:62
Alignment explanation
Indices: 4047734--4048039 Score: 250
Period size: 58 Copynumber: 5.0 Consensus size: 62
4047724 CCTAAAAATA
* * *
4047734 TTTTTTGAAAATTTATTTTTACGAAAAATTGATACTTTCAACTTTTCCCCAAAAAT-A----TT
1 TTTTTTG--AATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATCATTTTTT
* * * *
4047793 TTTTTGGAAATTTTGATTTTCAAGGAAAATTGATACTTTCAACTTTTTCCCTAAAAAT-A-----
1 TTTTTTG-AA-TTT-ATTTTTAAGGAAAATGGATACTTTCAAC-TTTTCCCCAAAAATCATTTTT
*
4047852 A
62 T
* *
4047853 TTTTTGGAAATTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAAT-A----TT
1 TTTTTTG-AATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATCATTTTTT
* ** * * *
4047911 TTTTTTGAAAATTATTTCAAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTT
1 TTTTTTG-AATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAAT-CATTTTTT
4047975 TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAAT-ATTTTTT
1 TTTTTTG--AATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATCATTTTTT
4048038 TT
1 TT
4048040 GGAACTTTTG
Statistics
Matches: 215, Mismatches: 21, Indels: 18
0.85 0.08 0.07
Matches are distributed among these distances:
57 14 0.07
58 80 0.37
59 12 0.06
60 35 0.16
61 14 0.07
63 8 0.04
64 9 0.04
65 43 0.20
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.46
Consensus pattern (62 bp):
TTTTTTGAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATCATTTTTT
Found at i:4048096 original size:16 final size:15
Alignment explanation
Indices: 4048076--4048138 Score: 63
Period size: 16 Copynumber: 3.9 Consensus size: 15
4048066 AATAGAATAA
4048076 TAAAAAAAATAAAAG
1 TAAAAAAAATAAAAG
* *
4048091 TGAAAATAAATAAAAA
1 T-AAAAAAAATAAAAG
*
4048107 TAAAAATAAAGAAAAG
1 TAAAAA-AAATAAAAG
4048123 TAAAACAAAAATAAAA
1 T-AAA-AAAAATAAAA
4048139 ATAAGGTAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
15 5 0.13
16 21 0.55
17 10 0.26
18 2 0.05
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (15 bp):
TAAAAAAAATAAAAG
Found at i:4048149 original size:27 final size:28
Alignment explanation
Indices: 4048102--4048155 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
4048092 GAAAATAAAT
4048102 AAAAATAAAAATAAAGAAAAG-TAAAAC
1 AAAAATAAAAATAAAGAAAAGATAAAAC
* *
4048129 AAAAATAAAAATAAGGTAAAGATAAAA
1 AAAAATAAAAATAAAGAAAAGATAAAA
4048156 AATATTAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 19 0.79
28 5 0.21
ACGTcount: A:0.76, C:0.02, G:0.09, T:0.13
Consensus pattern (28 bp):
AAAAATAAAAATAAAGAAAAGATAAAAC
Found at i:4048154 original size:6 final size:6
Alignment explanation
Indices: 4048071--4048142 Score: 51
Period size: 6 Copynumber: 11.8 Consensus size: 6
4048061 AAGAAAATAG
* *
4048071 AATAATA AA-AAA AATAAA AGTGAA AAT--A AATAAA AATAAA AATAAA
1 AATAA-A AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
* *
4048117 GAAAAGTAA AACAAA AATAAA AATAA
1 -AATA--AA AATAAA AATAAA AATAA
4048143 GGTAAAGATA
Statistics
Matches: 53, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
4 4 0.08
5 3 0.06
6 36 0.68
7 5 0.09
8 3 0.06
9 2 0.04
ACGTcount: A:0.78, C:0.01, G:0.06, T:0.15
Consensus pattern (6 bp):
AATAAA
Found at i:4048185 original size:4 final size:4
Alignment explanation
Indices: 4048178--4048227 Score: 50
Period size: 4 Copynumber: 12.5 Consensus size: 4
4048168 AACCTAATCT
* *
4048178 AATA AATA TAA-A AACA AATAA AATA AA-A AATA AATA AACA AATA AATA
1 AATA AATA -AATA AATA AAT-A AATA AATA AATA AATA AATA AATA AATA
4048226 AA
1 AA
4048228 AAAAAAACCT
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
3 5 0.13
4 28 0.72
5 6 0.15
ACGTcount: A:0.78, C:0.04, G:0.00, T:0.18
Consensus pattern (4 bp):
AATA
Found at i:4048208 original size:12 final size:12
Alignment explanation
Indices: 4048079--4048234 Score: 60
Period size: 12 Copynumber: 12.9 Consensus size: 12
4048069 AGAATAATAA
4048079 AAAAAATAAAAGT
1 AAAAAATAAAA-T
*
4048092 -GAAAAT-AAAT
1 AAAAAATAAAAT
4048102 -AAAAATAAAAAT
1 AAAAAAT-AAAAT
4048114 AAAGAAAAGTAAAA-
1 -AA-AAAA-TAAAAT
*
4048128 CAAAAATAAAA-
1 AAAAAATAAAAT
* **
4048139 ATAAGGTAAAGAT
1 AAAAAATAAA-AT
4048152 AAAAAATATTAAAT
1 AAAAAATA--AAAT
** **
4048166 AAAACCTAATCT
1 AAAAAATAAAAT
*
4048178 AATAAATATAAA-
1 AAAAAATA-AAAT
*
4048190 AACAAATAAAAT
1 AAAAAATAAAAT
4048202 AAAAAAT-AAAT
1 AAAAAATAAAAT
4048213 AAACAAAT-AAAT
1 AAA-AAATAAAAT
4048225 AAAAAA-AAAA
1 AAAAAATAAAA
4048235 CCTAGAGCGG
Statistics
Matches: 108, Mismatches: 21, Indels: 30
0.68 0.13 0.19
Matches are distributed among these distances:
10 6 0.06
11 30 0.28
12 45 0.42
13 7 0.06
14 9 0.08
15 10 0.09
16 1 0.01
ACGTcount: A:0.74, C:0.04, G:0.04, T:0.17
Consensus pattern (12 bp):
AAAAAATAAAAT
Found at i:4048213 original size:28 final size:27
Alignment explanation
Indices: 4048178--4048234 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 27
4048168 AACCTAATCT
4048178 AATAAATATAA-AAACAAATAAAATAAAA
1 AATAAATA-AACAAACAAATAAAA-AAAA
*
4048206 AATAAATAAACAAATAAATAAAAAAAA
1 AATAAATAAACAAACAAATAAAAAAAA
4048233 AA
1 AA
4048235 CCTAGAGCGG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 8 0.30
28 19 0.70
ACGTcount: A:0.81, C:0.04, G:0.00, T:0.16
Consensus pattern (27 bp):
AATAAATAAACAAACAAATAAAAAAAA
Found at i:4048231 original size:24 final size:24
Alignment explanation
Indices: 4048181--4048230 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 24
4048171 CTAATCTAAT
4048181 AAATATAAAAACAAATAAAATAAA
1 AAATATAAAAACAAATAAAATAAA
4048205 AAATA-AATAAACAAAT-AAATAAA
1 AAATATAA-AAACAAATAAAATAAA
4048228 AAA
1 AAA
4048231 AAAACCTAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
23 12 0.48
24 13 0.52
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (24 bp):
AAATATAAAAACAAATAAAATAAA
Found at i:4049158 original size:18 final size:17
Alignment explanation
Indices: 4049137--4049184 Score: 64
Period size: 16 Copynumber: 2.9 Consensus size: 17
4049127 ATATATAATT
4049137 AAATAAATAAAAATACAA
1 AAATAAATAAAAATA-AA
*
4049155 AAATAAAT-AAAACAAA
1 AAATAAATAAAAATAAA
4049171 AAAT-AATAAAAATA
1 AAATAAATAAAAATA
4049185 TATATTATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 3 0.11
16 11 0.41
17 5 0.19
18 8 0.30
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.17
Consensus pattern (17 bp):
AAATAAATAAAAATAAA
Found at i:4049171 original size:15 final size:15
Alignment explanation
Indices: 4049141--4049181 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
4049131 ATAATTAAAT
*
4049141 AAATAAA-AATACAA
1 AAATAAATAAAACAA
4049155 AAATAAATAAAACAA
1 AAATAAATAAAACAA
4049170 AAA-ATAATAAAA
1 AAATA-AATAAAA
4049182 ATATATATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 8 0.33
15 16 0.67
ACGTcount: A:0.80, C:0.05, G:0.00, T:0.15
Consensus pattern (15 bp):
AAATAAATAAAACAA
Found at i:4049245 original size:12 final size:12
Alignment explanation
Indices: 4049228--4049262 Score: 56
Period size: 11 Copynumber: 3.1 Consensus size: 12
4049218 TAGGATATAC
4049228 ATAAAATATAAA
1 ATAAAATATAAA
4049240 ATAAAATA-AAA
1 ATAAAATATAAA
4049251 ATAAAA-ATAAA
1 ATAAAATATAAA
4049262 A
1 A
4049263 ATGACAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 13 0.59
12 8 0.36
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (12 bp):
ATAAAATATAAA
Found at i:4049253 original size:6 final size:6
Alignment explanation
Indices: 4049230--4049264 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
4049220 GGATATACAT
4049230 AAAATA TAAAAT- AAAATA AAAATA AAAATA AAAAT
1 AAAATA -AAAATA AAAATA AAAATA AAAATA AAAAT
4049265 GACAAAGATA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.19
6 17 0.63
7 5 0.19
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
AAAATA
Found at i:4049548 original size:19 final size:19
Alignment explanation
Indices: 4049523--4049567 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
4049513 ATAGAGGTAA
4049523 CTTTTTTTA-ATTTTTTTG
1 CTTTTTTTATATTTTTTTG
*
4049541 CTTTTTTTATTTTTTTTTG
1 CTTTTTTTATATTTTTTTG
4049560 CTTTTTTT
1 CTTTTTTT
4049568 TTTTAAATTG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 9 0.36
19 16 0.64
ACGTcount: A:0.07, C:0.07, G:0.04, T:0.82
Consensus pattern (19 bp):
CTTTTTTTATATTTTTTTG
Found at i:4049586 original size:126 final size:125
Alignment explanation
Indices: 4049419--4049656 Score: 325
Period size: 126 Copynumber: 1.9 Consensus size: 125
4049409 CAACTCAACA
** * *
4049419 TTTTCATTTTTTTTTGTTTTTTTGTTTTTTTTTACCAAAGCTCATTTAAACAGAGGCTCAACGAC
1 TTTTCATTTTTTTTTGTTTTTTTGTTTTAATTGACCAAAGCTCATCTAAACAGAGGCTCAACGAC
* * *
4049484 TTTTAGAAACATAAATAAAGCTCCTCTAAATAGAGGTAACTTTTTTTAATTTTTTTGCTT
66 TTTGAGAAACATAAACAAAGCTCCTCTAAATAGAGGCAACTTTTTTTAATTTTTTTGCTT
* * * * * *
4049544 TTTTTATTTTTTTTTGCTTTTTTT-TTTTAAATTGATCAAAGCTCCTCTAAGCAGAGGTTCAATG
1 TTTTCATTTTTTTTTG-TTTTTTTGTTTT-AATTGACCAAAGCTCATCTAAACAGAGGCTCAACG
*
4049608 ACTTTGAGAAACATAAACAAAGCTCCTCTAAATAGAGGCAATTTTTTTT
64 ACTTTGAGAAACATAAACAAAGCTCCTCTAAATAGAGGCAACTTTTTTT
4049657 TTAAATGATC
Statistics
Matches: 97, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
125 19 0.20
126 78 0.80
ACGTcount: A:0.28, C:0.14, G:0.11, T:0.47
Consensus pattern (125 bp):
TTTTCATTTTTTTTTGTTTTTTTGTTTTAATTGACCAAAGCTCATCTAAACAGAGGCTCAACGAC
TTTGAGAAACATAAACAAAGCTCCTCTAAATAGAGGCAACTTTTTTTAATTTTTTTGCTT
Found at i:4049645 original size:45 final size:44
Alignment explanation
Indices: 4049580--4049731 Score: 130
Period size: 45 Copynumber: 3.5 Consensus size: 44
4049570 TTAAATTGAT
*
4049580 CAAAGCTCCTCTAAGCAGAGGTTCAATGACTTTGAGAAACATAAA
1 CAAAGCTCCTCTAAACAGAGG-TCAATGACTTTGAGAAACATAAA
* ** **** * *
4049625 CAAAGCTCCTCTAAATAGAGG-CAAT-TTTTTTTTTAA-ATGAT
1 CAAAGCTCCTCTAAACAGAGGTCAATGACTTTGAGAAACATAAA
* *
4049666 CAAAGCTCCTCCAAGCAGAGGCTCAATGACTTTGAGAAACATAAA
1 CAAAGCTCCTCTAAACAGAGG-TCAATGACTTTGAGAAACATAAA
** *
4049711 TGAAGCTCCTCTAAATAGAGG
1 CAAAGCTCCTCTAAACAGAGG
4049732 CAACTTTTTT
Statistics
Matches: 77, Mismatches: 26, Indels: 8
0.69 0.23 0.07
Matches are distributed among these distances:
41 21 0.27
42 5 0.06
43 8 0.10
44 5 0.06
45 38 0.49
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.26
Consensus pattern (44 bp):
CAAAGCTCCTCTAAACAGAGGTCAATGACTTTGAGAAACATAAA
Found at i:4049666 original size:86 final size:88
Alignment explanation
Indices: 4049562--4049745 Score: 318
Period size: 86 Copynumber: 2.1 Consensus size: 88
4049552 TTTTTTTGCT
* *
4049562 TTTTTTTTTTAAATTGATCAAAGCTCCTCTAAGCAGAGGTTCAATGACTTTGAGAAACATAAACA
1 TTTTTTTTTTAAATTGATCAAAGCTCCTCCAAGCAGAGGCTCAATGACTTTGAGAAACATAAACA
4049627 AAGCTCCTCTAAATAGAGGCAA-
66 AAGCTCCTCTAAATAGAGGCAAC
**
4049649 TTTTTTTTTTAAA-TGATCAAAGCTCCTCCAAGCAGAGGCTCAATGACTTTGAGAAACATAAATG
1 TTTTTTTTTTAAATTGATCAAAGCTCCTCCAAGCAGAGGCTCAATGACTTTGAGAAACATAAACA
4049713 AAGCTCCTCTAAATAGAGGCAAC
66 AAGCTCCTCTAAATAGAGGCAAC
4049736 TTTTTTTTTT
1 TTTTTTTTTT
4049746 TTTTTTGTTT
Statistics
Matches: 92, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
86 69 0.75
87 23 0.25
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (88 bp):
TTTTTTTTTTAAATTGATCAAAGCTCCTCCAAGCAGAGGCTCAATGACTTTGAGAAACATAAACA
AAGCTCCTCTAAATAGAGGCAAC
Found at i:4049686 original size:41 final size:41
Alignment explanation
Indices: 4049562--4049687 Score: 108
Period size: 45 Copynumber: 3.0 Consensus size: 41
4049552 TTTTTTTGCT
4049562 TTTTTTTTTTAAATTGATCAAAGCTCCTCTAAGCAGAGGTTCAA
1 TTTTTTTTTTAAA-TGATCAAAGCTCCTCTAAGCAGAGG--CAA
** **** * * **
4049606 TGACTTTGAGAAACATAAACAAAGCTCCTCTAAATAGAGGCAA
1 T-TTTTTTTTTAA-ATGATCAAAGCTCCTCTAAGCAGAGGCAA
*
4049649 TTTTTTTTTTAAATGATCAAAGCTCCTCCAAGCAGAGGC
1 TTTTTTTTTTAAATGATCAAAGCTCCTCTAAGCAGAGGC
4049688 TCAATGACTT
Statistics
Matches: 59, Mismatches: 21, Indels: 7
0.68 0.24 0.08
Matches are distributed among these distances:
41 22 0.37
42 5 0.08
43 4 0.07
44 1 0.02
45 26 0.44
46 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33
Consensus pattern (41 bp):
TTTTTTTTTTAAATGATCAAAGCTCCTCTAAGCAGAGGCAA
Found at i:4049856 original size:42 final size:42
Alignment explanation
Indices: 4049766--4049961 Score: 313
Period size: 42 Copynumber: 4.7 Consensus size: 42
4049756 TTTTTTAAAA
* * * **
4049766 GCTCCTCTAAACAGAGGCTCGACGGC-TTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTAAAAAGTAAATT
4049807 GCTCCTCTAAACAGAGGCACCACGACTTTTAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTAAAAAGTAAATT
**
4049849 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTAAAAAGTAAATT
*
4049891 GCTCCTCTAAACAGAGGCACCACGACTTTTAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTAAAAAGTAAATT
4049933 GCTCCTCTAAACAGAGGCACCACGACTTT
1 GCTCCTCTAAACAGAGGCACCACGACTTT
4049962 CCCCTCTAAA
Statistics
Matches: 144, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
41 23 0.16
42 121 0.84
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTTAAAAAGTAAATT
Found at i:4049907 original size:84 final size:83
Alignment explanation
Indices: 4049766--4049961 Score: 347
Period size: 84 Copynumber: 2.3 Consensus size: 83
4049756 TTTTTTAAAA
* * *
4049766 GCTCCTCTAAACAGAGGCTCGACGGCTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
4049831 ACTTTTAAAAAGTAAATT
66 ACTTTTAAAAAGTAAATT
4049849 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
*
4049914 GACTTTTAGAAAGTAAATT
65 GACTTTTAAAAAGTAAATT
4049933 GCTCCTCTAAACAGAGGCACCACGACTTT
1 GCTCCTCTAAACAGAGGCACCACGACTTT
4049962 CCCCTCTAAA
Statistics
Matches: 108, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
83 28 0.26
84 80 0.74
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (83 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
ACTTTTAAAAAGTAAATT
Found at i:4049976 original size:28 final size:28
Alignment explanation
Indices: 4049936--4049989 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
4049926 GTAAATTGCT
4049936 CCTCTAAACAGAGGCACCACGACTTTCC
1 CCTCTAAACAGAGGCACCACGACTTTCC
*
4049964 CCTCTAAATAGAGGCACCACGACTTT
1 CCTCTAAACAGAGGCACCACGACTTT
4049990 AAAAAGTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.30, C:0.35, G:0.15, T:0.20
Consensus pattern (28 bp):
CCTCTAAACAGAGGCACCACGACTTTCC
Found at i:4050016 original size:69 final size:69
Alignment explanation
Indices: 4049894--4050099 Score: 367
Period size: 69 Copynumber: 3.0 Consensus size: 69
4049884 GTAAATTGCT
*
4049894 CCTCTAAACAGAGGCACCACGACTTTTAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
1 CCTCTAAATAGAGGCACCACGAC-TTTAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
4049959 TTTCC
65 TTTCC
* *
4049964 CCTCTAAATAGAGGCACCACGACTTTAAAAAGTAAATTGCTCCTCTAAACAGAGGCATCACGACT
1 CCTCTAAATAGAGGCACCACGACTTTAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
4050029 TTCC
66 TTCC
*
4050033 CCTCTAAATAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
1 CCTCTAAATAGAGGCACCACGACTTTAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
4050098 TT
66 TT
4050100 TGAAAAGTAA
Statistics
Matches: 130, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
69 108 0.83
70 22 0.17
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.22
Consensus pattern (69 bp):
CCTCTAAATAGAGGCACCACGACTTTAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
TTCC
Found at i:4050045 original size:28 final size:28
Alignment explanation
Indices: 4050005--4050058 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
4049995 GTAAATTGCT
*
4050005 CCTCTAAACAGAGGCATCACGACTTTCC
1 CCTCTAAACAGAGGCACCACGACTTTCC
*
4050033 CCTCTAAATAGAGGCACCACGACTTT
1 CCTCTAAACAGAGGCACCACGACTTT
4050059 GGAAAGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.30, C:0.33, G:0.15, T:0.22
Consensus pattern (28 bp):
CCTCTAAACAGAGGCACCACGACTTTCC
Found at i:4050078 original size:41 final size:42
Alignment explanation
Indices: 4050033--4050118 Score: 147
Period size: 41 Copynumber: 2.1 Consensus size: 42
4050023 ACGACTTTCC
* *
4050033 CCTCTAAATAGAGGCACCACGAC-TTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATTGCT
4050074 CCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATTGCT
4050116 CCT
1 CCT
4050119 AACAATCATG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
41 22 0.52
42 20 0.48
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.24
Consensus pattern (42 bp):
CCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATTGCT
Found at i:4050422 original size:43 final size:42
Alignment explanation
Indices: 4050316--4050452 Score: 152
Period size: 43 Copynumber: 3.2 Consensus size: 42
4050306 TGAAAGATCC
** * *
4050316 TCATTTGAATTTTGGAAGCTCACATCCAAAAGTTAAAGGTTCT
1 TCATTTGAATTTTGGAAATTCACATCCAAAAATTAAAGCTT-T
** *
4050359 T-ATTTGGCAAACTTGG-AATTCATATCCAAAAATCTAAAGCTTT
1 TCATTT-G-AATTTTGGAAATTCACATCCAAAAAT-TAAAGCTTT
4050402 TCATTTGAATTTTGGAAATTCACATCCAAAAATTCAAAGCTTT
1 TCATTTGAATTTTGGAAATTCACATCCAAAAATT-AAAGCTTT
4050445 TCATTTGA
1 TCATTTGA
4050453 GTTCAAAGGC
Statistics
Matches: 78, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
42 11 0.14
43 50 0.64
44 17 0.22
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.36
Consensus pattern (42 bp):
TCATTTGAATTTTGGAAATTCACATCCAAAAATTAAAGCTTT
Found at i:4050684 original size:22 final size:22
Alignment explanation
Indices: 4050636--4050694 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
4050626 GGTTTCACTC
4050636 CTCAAAGATTCTCATTTTGAAAT
1 CTCAAAGATTCTCA-TTTGAAAT
**
4050659 -TCAAAGATTCTCATTTGAGTT
1 CTCAAAGATTCTCATTTGAAAT
*
4050680 CTCAAAAATTCTCAT
1 CTCAAAGATTCTCAT
4050695 CAAAACATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.19
22 26 0.81
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.39
Consensus pattern (22 bp):
CTCAAAGATTCTCATTTGAAAT
Found at i:4051789 original size:11 final size:10
Alignment explanation
Indices: 4051765--4051818 Score: 55
Period size: 9 Copynumber: 5.8 Consensus size: 10
4051755 ATTTGAATCT
4051765 TTTTTTTTCA
1 TTTTTTTTCA
*
4051775 --TTTTCTCA
1 TTTTTTTTCA
4051783 -TTTTTTTC-
1 TTTTTTTTCA
4051791 TTTTTTTCTCA
1 TTTTTTT-TCA
4051802 TTTTTTTTC-
1 TTTTTTTTCA
4051811 TTTTTTTT
1 TTTTTTTT
4051819 TTCATCATCT
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
8 7 0.18
9 20 0.53
10 4 0.11
11 7 0.18
ACGTcount: A:0.06, C:0.13, G:0.00, T:0.81
Consensus pattern (10 bp):
TTTTTTTTCA
Found at i:4051810 original size:20 final size:19
Alignment explanation
Indices: 4051775--4051817 Score: 77
Period size: 20 Copynumber: 2.2 Consensus size: 19
4051765 TTTTTTTTCA
4051775 TTTTCTCATTTTTTTCTTT
1 TTTTCTCATTTTTTTCTTT
4051794 TTTTCTCATTTTTTTTCTTT
1 TTTTCTCA-TTTTTTTCTTT
4051814 TTTT
1 TTTT
4051818 TTTCATCATC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.81
Consensus pattern (19 bp):
TTTTCTCATTTTTTTCTTT
Found at i:4051814 original size:19 final size:19
Alignment explanation
Indices: 4051765--4051816 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 19
4051755 ATTTGAATCT
*
4051765 TTTTTTTTC-ATTTTCTCA
1 TTTTTTTTCTTTTTTCTCA
4051783 -TTTTTTTCTTTTTTTCTCA
1 TTTTTTTTC-TTTTTTCTCA
4051802 TTTTTTTTCTTTTTT
1 TTTTTTTTCTTTTTT
4051817 TTTTCATCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 8 0.27
19 14 0.47
20 8 0.27
ACGTcount: A:0.06, C:0.13, G:0.00, T:0.81
Consensus pattern (19 bp):
TTTTTTTTCTTTTTTCTCA
Found at i:4051817 original size:10 final size:10
Alignment explanation
Indices: 4051783--4051819 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
4051773 CATTTTCTCA
4051783 TTTTTTTCTT
1 TTTTTTTCTT
* *
4051793 TTTTTCTCAT
1 TTTTTTTCTT
4051803 TTTTTTTCTT
1 TTTTTTTCTT
4051813 TTTTTTT
1 TTTTTTT
4051820 TCATCATCTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.03, C:0.11, G:0.00, T:0.86
Consensus pattern (10 bp):
TTTTTTTCTT
Found at i:4053044 original size:20 final size:20
Alignment explanation
Indices: 4053005--4053054 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
4052995 GATTGATGAT
* *
4053005 TCATCGGAATTCTGGGTTTTG
1 TCATC-GAAATCTAGGTTTTG
*
4053026 TCATCGAAATCTAGGTTTTT
1 TCATCGAAATCTAGGTTTTG
*
4053046 TCGTCGAAA
1 TCATCGAAA
4053055 GTTCACCAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 20 0.80
21 5 0.20
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.40
Consensus pattern (20 bp):
TCATCGAAATCTAGGTTTTG
Found at i:4053597 original size:28 final size:27
Alignment explanation
Indices: 4053504--4053657 Score: 94
Period size: 28 Copynumber: 5.7 Consensus size: 27
4053494 AATAAAAATC
* *
4053504 AAATAAATAAAAAAATATTAGATAATT
1 AAATAAATAAAAAAATAATATATAATT
*
4053531 AGAA-AAGATAATAAAAA-AATATTATAGGATA
1 A-AATAA-ATAA-AAAAATAATA-TATA--ATT
*
4053562 AAAAAAATAAAAACAATAATATATAATT
1 AAATAAATAAAAA-AATAATATATAATT
* *
4053590 AAATAAATAAAAATATAA-ATTTTAA--
1 AAATAAATAAAAAAATAATA-TATAATT
4053615 AAATTAAATAAAAAAAT-ATAT-T-ATT
1 AAA-TAAATAAAAAAATAATATATAATT
*
4053640 -AAT-AATAAATAAATAATA
1 AAATAAATAAAAAAATAATA
4053658 AATACATAGG
Statistics
Matches: 103, Mismatches: 9, Indels: 34
0.71 0.06 0.23
Matches are distributed among these distances:
22 10 0.10
23 5 0.05
24 3 0.03
25 5 0.05
26 14 0.14
27 11 0.11
28 23 0.22
29 11 0.11
30 12 0.12
31 9 0.09
ACGTcount: A:0.68, C:0.01, G:0.03, T:0.29
Consensus pattern (27 bp):
AAATAAATAAAAAAATAATATATAATT
Found at i:4053648 original size:26 final size:25
Alignment explanation
Indices: 4053565--4053652 Score: 83
Period size: 26 Copynumber: 3.5 Consensus size: 25
4053555 TAGGATAAAA
* *
4053565 AAAATAAA-AACAATAATATATAATT
1 AAAATAAATAA-AAAAATATATTATT
* *
4053590 -AAATAAATAAAAATATAAATT-TT
1 AAAATAAATAAAAAAATATATTATT
4053613 AAAAATTAAATAAAAAAATATATTATT
1 -AAAA-TAAATAAAAAAATATATTATT
4053640 AATAATAAATAAA
1 AA-AATAAATAAA
4053653 TAATAAATAC
Statistics
Matches: 51, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
23 2 0.04
24 14 0.27
25 5 0.10
26 26 0.51
27 4 0.08
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.31
Consensus pattern (25 bp):
AAAATAAATAAAAAAATATATTATT
Found at i:4053691 original size:12 final size:12
Alignment explanation
Indices: 4053674--4053708 Score: 56
Period size: 11 Copynumber: 3.1 Consensus size: 12
4053664 TAGGATATAC
4053674 ATAAAATATAAA
1 ATAAAATATAAA
4053686 ATAAAATA-AAA
1 ATAAAATATAAA
4053697 ATAAAA-ATAAA
1 ATAAAATATAAA
4053708 A
1 A
4053709 ATGACAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 13 0.59
12 8 0.36
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (12 bp):
ATAAAATATAAA
Found at i:4053699 original size:6 final size:6
Alignment explanation
Indices: 4053676--4053710 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
4053666 GGATATACAT
4053676 AAAATA TAAAAT- AAAATA AAAATA AAAATA AAAAT
1 AAAATA -AAAATA AAAATA AAAATA AAAATA AAAAT
4053711 GACAAAGATA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.19
6 17 0.63
7 5 0.19
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
AAAATA
Found at i:4056042 original size:866 final size:869
Alignment explanation
Indices: 4054760--4059839 Score: 5790
Period size: 899 Copynumber: 5.8 Consensus size: 869
4054750 TAGGCATATG
* * * * * ** *
4054760 GAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTACGATAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGC
* *
4054825 ATGTGCTGGTGCCACATTTTTCTT--TACTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTG
66 ATGTGCTGGTGCCGCATTTTTCTTCGT-C-GGGGCACCATCGTCGGAGCATCATCGGAGAACCTG
* * * *
4054888 ATCGGA-GACATTGGGGTTCTGGCGATCAGGGGGGCGGGGGGGGGTGTGCGCACATGATGTGCGA
129 ATC-GACGGCATTGGGGTTCCGACGATC-GGGGGGC-CGGGGGGGTGTGCGCACATGATGTGCGA
*
4054952 TGGGTGCTGGTACTTGGCCAC-TATATTGGCACCCTATCCCTCATCTAACCTCGAGAACTCACAC
191 TGGGTGCTGGTACTTGGCC-CTTATATTGGC-CCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
4055016 CCCTTTAAAGAGCATTTGAGATTTTAAAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTG
254 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * * *
4055081 GGACACTTTTTTCAGATGGCCACAAAATCTTGCACACTTCGAGTTTTTAGCTGAATGTTTTTGTG
319 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTG
* * * *
4055146 CATACCAACAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCGAAACTCTTTCTAAAAAAAT
384 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTC-GAAAAAAT
* *
4055211 TTTAGAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
448 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
4055276 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATT
513 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
4055341 GGCATGCAGAAATATGAAGATGTGCCGAAACCCACCTACCACCCAATCGATCCATGGCTTGTGCA
578 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* **
4055406 TCGCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCTTGTTTCGTCGGTTGGCTTAGGCATATGGAG
643 TC-CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACAGAG
* ** * * * * * **
4055471 TTCATTCCCAATCTAAGATTGGACTGGACTGAGGTATACGGCAGCAGGATCAGCAGCACATAGAG
707 TTCATTCCCAGTCTAAGATCAGACCGGACAGAGGTATGCGGCAGTAGGATCGGCAGCACGCAGAG
* ** *
4055536 GGGGACTCGACCGATCCCCGGCTTGCGCACCCCGCCCCTCTGGCCGGCTGAGCGCTCGCACGCTC
772 GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCTCGCACGCTC
*
4055601 GTTTCGCGGGTTGACTTAGG-CA-A-A-T-G-A
837 GTTTCGTGGGTTGACTTAGGACATACACTAGAA
* * *
4055628 -AGTTCATTCCCAGTCTAAGAGCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGC
* * *
4055692 ATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCGCCATCGTCGGAGCATCGTCGGAGAACCTGA-
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGAT
* ** * *
4055756 CTGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGTGCACATGATGAGCGATGG
131 C-GACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
* * * *
4055821 GTGCTTGTACTTGGCCCTTATATGGGACCCCTATCCCTCATCAAACCTTGAGAACTCACACCTCC
194 GTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
4055886 TTAAAGAGCATTTGAGATTTTACAGCTTTGCTGCCAGTAGCTATTAAAGTGTCTGAATTGGGGAC
258 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
4055951 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATG
323 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATG
* *** *
4056016 CCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTTCTTAAAAAAAAATTTTT
388 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCTTTCGAAAAAATTTTA
* * ** * * *
4056081 AAAAATCCCGAACCGTAAAGAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTGGTCTTGCCTTG
452 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * * **
4056146 AAACTTCACGTGAAGCCTTAAGGGACCGTTCTATGAATTTACAAGCCATAAAAATGTAATTGGCA
517 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
4056211 TGCAGAAATATGAAGGTGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCT
582 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC-
* * *
4056276 GTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCCCTCTCGTTTCGTCAGTCGGCTTAGGCATAC
646 GTCTCTCTGGCCGGCGTAGTG--C--CCGCCCG--CT-T-GTTTCGTCGGTTGGCTTAGGCATAC
* * * * ** *
4056341 AGAGTTAATTCCCAGTCTAAGATCATACCAGACCAAAGGT-TGCGATAGTAGGATCGGCAACACG
703 AGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CAGAGGTATGCGGCAGTAGGATCGGCAGCACG
* * ** * * * *
4056405 CAGAGGAGGACCCGATCGATCCCCGGCTTATGCATCCCGCGCCTCTGGCCGACTGAGCGCCCGTA
767 CAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCTCGCA
*
4056470 CGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
832 CGCTCGTTTCGTGGGTTGACTTAGG---AC--A--T-A----CA--CT-AG-A-A
* *
4056525 CGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCACATGCTGGGCTTGG
1 --GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGG
* * * ** * *
4056590 GCAGGTGCTGGTCCCGCATTTCTCTTCCCCGGGGCACCATCGTCAGAGCATC-GCTGGAGAACCT
64 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATC-GGAGAACCT
* * * * * * *
4056654 GACCGACGGCACTGGGGTTCCGACGATCAGGGGGCCCGGGGGGTGTCCGCACATGATGTGTGATA
128 GATCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
*
4056719 GGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
193 GGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
4056784 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAATGTCTAAAATGGGGA
257 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
4056849 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCT-GATTTGTTTTATGCA
322 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTT-TTTTGTGCA
* *
4056913 TGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACT-TTCTCTGAAAAAATT
386 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTT-TC-GAAAAAATT
* * * * *
4056977 TTAAAAAATTTCGAATCGCAAAAATTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
449 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * * *
4057042 ATGAAACTACACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAGAAATGGTATTG
514 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
4057107 GTACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
579 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
4057172 CCCGTCTCCCTGGTCGGCGTAGTGCCCGCCGGCTCGTCGGCTCATTTCGTCGGTTGGCTTAGGCA
644 -CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCT--T--G----TTTCGTCGGTTGGCTTAGGCA
* ** * * * * *
4057237 TACATACATCATTCACAGTCTAAGATCAGACCGGACCGAAGGT-TGCAGCAGTAGCATCGGTAGC
700 TACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACAG-AGGTATGCGGCAGTAGGATCGGCAGC
* ** ** * *
4057301 ATGCAGAGGGGGACCCGGTCGATCCCTAGCTTGCGCATCCCGCCCCTCTGGCTAGCTGAGTGCTT
764 ACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCTC
4057366 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
829 GCACGCTCGTTTCGTGGGTTGACTTAGG---AC--A--T-A----CA--CT-AG-A-A
* * * * *
4057424 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTTGA
1 --GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGG
* * * * * * *
4057489 GCATGTGTTGGTGCCACATTTTTCTTCGTCAGGGCACCATC-ACCGAGAATCATCGAAGAACCTG
64 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTG
* *
4057553 ACCGACGGCATTGGGGTTCTGACGATCGGGAGGGCCGGGGGGTGGTGTGCGCACATGATGTGCGA
129 ATCGACGGCATTGGGGTTCCGACGATCGGG-GGGCC-GGGGG-GGTGTGCGCACATGATGTGCGA
*
4057618 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTCACACC
191 TGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCCCTCATCAAACCTCGAGAACTCACACC
*
4057683 CCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
255 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
4057748 GACA-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACAAAATTTTTTAT-T-
320 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTT-TGTG
* *
4057810 AATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTGC-TTCGAAAAAA
384 CATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCGAAAAAA
* * ** * *
4057874 TTTAAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAAATGAGTCGTCTTG
447 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
4057939 CCATGAAACTTCATGTGAAGGTTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCAT
512 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
4058004 TGGC-T-CATAGAAATATGAAGATGTACCTAAACCCAGCTACCATCCC-ATC--TCTC-TGGC--
577 TGGCATGC--AGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCCTATCGATC-CACGGCTT
** * * * ** * * *
4058061 -CG-A--CG--T-AGTGCCCGTC-CACCCGCCCG-CTGCTTGTTTCATCGGTTGCCTTAGGCATA
638 GCGCATCCGTCTCTCTGGCCGGCGTA-GTGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATA
* * * * * **
4058117 CAGAGTTCATTCCCAATCTAGGATCAGA-CGGAACCAAGAGG-ATTCCAGGTAGCAGGATCAACA
702 CAGAGTTCATTCCCAGTCTAAGATCAGACCGG-A-C-AGAGGTA-TGC-GGCAGTAGGATCGGCA
* * ** *
4058180 GCATGCAGAAGGGGACCCGGTCGATCCTTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGT
762 GCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
4058245 TTGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTATCAGTCTAAGCATA
827 TCGCACGCTCGTTTCGTGGGTTGAC-T-----TA-GGA---CA-TA-CA--CT-AG-A-A
* *
4058305 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGGTTGG
1 --GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGG
* * * * * *
4058370 GCATGTGCTGGTACTGCATTTTTCTTCG-CTGGGGCACCATCATCGGAGCATCACCAGAGAACTT
64 GCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCATCGGAGAACCT
* * * * * *
4058434 GATCGACGGCATTGGCGTTTCGACGATCGGGGGGTCGGGGCGGTGTGTGCACATGATATGCGATG
128 GATCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
** **
4058499 GGTGCCAGTACTTGGCCCTTATATTGGGCCCCTATCATTCATCAAACCTCGAGAACTCACACCCC
193 GGTGCTGGTACTTGGCCCTTATATT-GGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
4058564 CTTCAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
257 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
4058629 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
322 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCAT
* *
4058694 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTTCG-AAAAATTTA
387 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCTTTCGAAAAAATTTT
* *
4058758 AAAAAATCTCGAACCGTAAAAGGTTTCAAAAATCATGAATAATAGAAAACGAGTCGTCTTGCCAT
451 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
** *
4058823 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCTTTGGC
516 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
4058888 ATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCC
581 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-C
* * *
4058953 CGTCTCTCTGGCCGACGTGGTGCCCGCTCGCACGCCCGCCCGCTTGTTTCGTCAGTTGGCTTAGG
645 CGTCTCTCTGG-C--C---G-G--CG-TAG--TGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGG
* * * *
4059018 CATAC-GAAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTCAT--GGCAGTAGGATCGG
698 CATACAG-AGTTCATTCCCAGTCTAAGATCAGACCGGACAGA-GGT-ATGCGGCAGTAGGATCGG
* *
4059080 CAGCACGTAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
760 CAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
4059145 GCCCGCACGCTCATTTCGTGGGTTGACTTAGG-CAT--AC--G--
825 GCTCGCACGCTCGTTTCGTGGGTTGACTTAGGACATACACTAGAA
* * * * *
4059183 GAGTTCATTCTCAGTCTAAGATCCGACTAGACTGAAGGTTGCGGCAGCACATGCTGGGCTTGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGC
* *
4059248 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-ACTGGAGCATCATCGGAGAACTTGA
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCATCGGAGAACCTGA
* * *
4059312 TCGGCGGAATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGG
130 TCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
**
4059377 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACATTCCCT
195 TGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
4059442 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAGGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*** * *
4059507 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTTTGTTTTTAGCTAATTTTTTTTTTGCATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGC
* * ** ** *
4059572 CAACAAAAATAAAAGGATCACATCTAATAAGTTTGGACCCAAAACTCCTTACGAAAAAA---T--
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCGAAAAAATTTTAA
* * *
4059632 ----T-T-------T-AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATTA
453 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
4059684 AACTTCACGTGAAGGCTCAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
518 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
*
4059749 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGC-CATCCGT
583 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCGT
*
4059813 C-CTCTTGGCCGACTGTAGTGCCCGCCC
648 CTCTC-TGGCCGGC-GTAGTGCCCGCCC
4059840 CCGCCCGCTC
Statistics
Matches: 3622, Mismatches: 454, Indels: 294
0.83 0.10 0.07
Matches are distributed among these distances:
846 8 0.00
848 3 0.00
849 1 0.00
851 1 0.00
854 1 0.00
856 4 0.00
857 8 0.00
858 3 0.00
859 159 0.04
860 1 0.00
865 2 0.00
866 451 0.12
867 143 0.04
868 3 0.00
869 1 0.00
870 6 0.00
872 2 0.00
873 1 0.00
874 140 0.04
875 8 0.00
876 389 0.11
877 9 0.00
878 45 0.01
879 148 0.04
880 272 0.08
881 213 0.06
882 49 0.01
884 3 0.00
885 6 0.00
886 7 0.00
887 13 0.00
888 4 0.00
889 3 0.00
890 3 0.00
891 3 0.00
892 3 0.00
893 4 0.00
894 4 0.00
895 10 0.00
896 2 0.00
897 10 0.00
898 51 0.01
899 882 0.24
900 235 0.06
901 152 0.04
902 91 0.03
903 2 0.00
904 10 0.00
905 50 0.01
906 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (869 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGC
ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGAT
CGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCGAAAAAATTTTAAAAA
ATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCGTCTC
TCTGGCCGGCGTAGTGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCC
AGTCTAAGATCAGACCGGACAGAGGTATGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCG
GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTCGTGG
GTTGACTTAGGACATACACTAGAA
Found at i:4056523 original size:26 final size:26
Alignment explanation
Indices: 4056494--4056546 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4056484 GTTGACTTAG
4056494 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4056520 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4056546 G
1 G
4056547 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4057429 original size:26 final size:26
Alignment explanation
Indices: 4057393--4057445 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4057383 GTTGACTTAG
4057393 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4057419 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4057445 G
1 G
4057446 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.