Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 3 of 129
Found at i:419786 original size:6 final size:6
Alignment explanation
Indices: 419775--419801 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
419765 TATGTGTGGG
419775 AAAAGA AAAAGA AAAAGA AAAAGA AAA
1 AAAAGA AAAAGA AAAAGA AAAAGA AAA
419802 TGTAATTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:429116 original size:26 final size:27
Alignment explanation
Indices: 429085--429161 Score: 77
Period size: 26 Copynumber: 2.9 Consensus size: 27
429075 TTCGGTAGCT
429085 TTCTTC-ATCTTTCTTTTGGCAGCTTC
1 TTCTTCAATCTTTCTTTTGGCAGCTTC
** *
429111 TTCTTCTTTCTTTC-TTTGGCATCTTC
1 TTCTTCAATCTTTCTTTTGGCAGCTTC
* *
429137 CTCTCCAACCTCTTTCTTTTGGCAG
1 TTCTTCAA--TCTTTCTTTTGGCAG
429162 TAGCTTCTCT
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
26 21 0.52
27 6 0.15
28 6 0.15
29 7 0.17
ACGTcount: A:0.08, C:0.30, G:0.10, T:0.52
Consensus pattern (27 bp):
TTCTTCAATCTTTCTTTTGGCAGCTTC
Found at i:429880 original size:144 final size:144
Alignment explanation
Indices: 429693--429963 Score: 345
Period size: 143 Copynumber: 1.9 Consensus size: 144
429683 CAAAAAGGTG
* **
429693 AAATTATGAAAATAACTTTATATGGGGATTTTCATAATTTCACACTT-CTCGGGGTACT-TTTGT
1 AAATTATGAAAATAACTTTATATGGGGATTTTCATAATTTCACACTTCCT-GAGGTA-TGGCTGT
* **
429756 GATTTCAAATACA-TTAAAATTCATGAAATATTATGAAATTAAGATCACAAAAGTTTCATGAAAA
64 AATTT-AAATACACCAAAAATT-ATGAAATATTATGAAATTAAGATCACAAAAGTTTCATGAAAA
429820 TTTGAGCTCAAGAAAGTC
127 TTTGAGCTCAAGAAAGTC
* **
429838 AAATTATGAAAA-ACCTTTATA-GGGGTATTTTGGTAATTTCACACTTCCTGAGGTATGGCTGTA
1 AAATTATGAAAATAACTTTATATGGGG-ATTTTCATAATTTCACACTTCCTGAGGTATGGCTGTA
* ***
429901 ATTTAAATGCACCAAAAATTATGAAATATTATGAAATTAAGATTTGAAAAGTTTCATGAAAAT
65 ATTTAAATACACCAAAAATTATGAAATATTATGAAATTAAGATCACAAAAGTTTCATGAAAAT
429964 CCATTATTGG
Statistics
Matches: 109, Mismatches: 13, Indels: 10
0.83 0.10 0.08
Matches are distributed among these distances:
143 51 0.47
144 44 0.40
145 14 0.13
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (144 bp):
AAATTATGAAAATAACTTTATATGGGGATTTTCATAATTTCACACTTCCTGAGGTATGGCTGTAA
TTTAAATACACCAAAAATTATGAAATATTATGAAATTAAGATCACAAAAGTTTCATGAAAATTTG
AGCTCAAGAAAGTC
Found at i:432745 original size:23 final size:22
Alignment explanation
Indices: 432690--432751 Score: 76
Period size: 20 Copynumber: 2.9 Consensus size: 22
432680 TTATCGCTAT
432690 TTAAATAAATTTTT-ATTATACA
1 TTAAATAAATTTTTAATT-TACA
*
432712 TT--ATTAATTTTTAATTTACA
1 TTAAATAAATTTTTAATTTACA
432732 TTCAAATAAATTTTTAATTT
1 TT-AAATAAATTTTTAATTT
432752 TTAATTTATA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
20 15 0.44
21 3 0.09
22 2 0.06
23 14 0.41
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (22 bp):
TTAAATAAATTTTTAATTTACA
Found at i:432778 original size:30 final size:30
Alignment explanation
Indices: 432715--432800 Score: 104
Period size: 30 Copynumber: 2.9 Consensus size: 30
432705 TTATACATTA
* *
432715 TTAATTTTTAATTTACATTCAAATAAATTT
1 TTAATTTTTAATTTATATTCAAATAAATAT
**
432745 TTAATTTTTAATTTATATTCAAATATGTAT
1 TTAATTTTTAATTTATATTCAAATAAATAT
*
432775 TTAA-TTTGAATTTATACTT-AAATAAA
1 TTAATTTTTAATTTATA-TTCAAATAAA
432801 CTCATAATAT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
29 16 0.33
30 32 0.67
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.52
Consensus pattern (30 bp):
TTAATTTTTAATTTATATTCAAATAAATAT
Found at i:434588 original size:35 final size:35
Alignment explanation
Indices: 434518--434588 Score: 81
Period size: 35 Copynumber: 2.0 Consensus size: 35
434508 TAAATTATTA
* ** *
434518 ATAAATGAATAAATATAAATATCTTTATAATTAAT
1 ATAAATGAATAAATATAAATAACTAAATAAATAAT
*
434553 ATAAATTAACTAAA-ATAAATAACTAAATAAATAAT
1 ATAAATGAA-TAAATATAAATAACTAAATAAATAAT
434588 A
1 A
434589 AATAAAATAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
35 26 0.87
36 4 0.13
ACGTcount: A:0.61, C:0.04, G:0.01, T:0.34
Consensus pattern (35 bp):
ATAAATGAATAAATATAAATAACTAAATAAATAAT
Found at i:434598 original size:12 final size:12
Alignment explanation
Indices: 434553--434594 Score: 59
Period size: 12 Copynumber: 3.4 Consensus size: 12
434543 TATAATTAAT
434553 ATAAATTAACTAAA
1 ATAAA-TAACT-AA
434567 ATAAATAACTAA
1 ATAAATAACTAA
434579 ATAAATAA-TAA
1 ATAAATAACTAA
434590 ATAAA
1 ATAAA
434595 ATAAAACATT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.29
12 10 0.36
13 5 0.18
14 5 0.18
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (12 bp):
ATAAATAACTAA
Found at i:435472 original size:27 final size:26
Alignment explanation
Indices: 435423--435477 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 26
435413 AAATAAAATG
*
435423 ATATTATTTAATCTAATTTTATTCATA
1 ATATTATTTAATCTAATTCTATT-ATA
* * *
435450 ATATTATTTTATTTTATTCTATTATA
1 ATATTATTTAATCTAATTCTATTATA
435476 AT
1 AT
435478 TTTGTATACT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (26 bp):
ATATTATTTAATCTAATTCTATTATA
Found at i:435855 original size:28 final size:28
Alignment explanation
Indices: 435818--435876 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
435808 AGTTTTTTGG
* *
435818 ATTATTGAATCAAAATTAA-ATTTATAA
1 ATTATTGAATAAAAAATAATATTTATAA
*
435845 ATTATTTGAATAAAAAATAATATTTTTAA
1 ATTA-TTGAATAAAAAATAATATTTATAA
435874 ATT
1 ATT
435877 TAATAGTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 4 0.15
28 13 0.48
29 10 0.37
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.44
Consensus pattern (28 bp):
ATTATTGAATAAAAAATAATATTTATAA
Found at i:439365 original size:2 final size:2
Alignment explanation
Indices: 439358--439395 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
439348 ATTTGATTAT
439358 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
439396 GTTGAGGCTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:441194 original size:39 final size:39
Alignment explanation
Indices: 441151--441225 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 39
441141 TAACTATTTA
*
441151 GCATCTTATGCGTTGATCACTTGATCTTTAATATTGCTT
1 GCATCTTATGAGTTGATCACTTGATCTTTAATATTGCTT
*
441190 GCATCTTATGAGTTGTTCACTTGATCTTTAATATTG
1 GCATCTTATGAGTTGATCACTTGATCTTTAATATTG
441226 TTTCCATGTC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.21, C:0.16, G:0.16, T:0.47
Consensus pattern (39 bp):
GCATCTTATGAGTTGATCACTTGATCTTTAATATTGCTT
Found at i:441226 original size:21 final size:21
Alignment explanation
Indices: 441167--441227 Score: 53
Period size: 21 Copynumber: 3.0 Consensus size: 21
441157 TATGCGTTGA
441167 TCACTTGATCTTTAATATTG-
1 TCACTTGATCTTTAATATTGT
441187 ---CTTGCATC-TT-ATGAGTTGT
1 TCACTTG-ATCTTTAAT-A-TTGT
441206 TCACTTGATCTTTAATATTGT
1 TCACTTGATCTTTAATATTGT
441227 T
1 T
441228 TCCATGTCTG
Statistics
Matches: 32, Mismatches: 0, Indels: 17
0.65 0.00 0.35
Matches are distributed among these distances:
16 2 0.06
17 7 0.22
18 6 0.19
21 8 0.25
22 7 0.22
23 2 0.06
ACGTcount: A:0.21, C:0.15, G:0.13, T:0.51
Consensus pattern (21 bp):
TCACTTGATCTTTAATATTGT
Found at i:441359 original size:39 final size:39
Alignment explanation
Indices: 441289--441379 Score: 93
Period size: 39 Copynumber: 2.4 Consensus size: 39
441279 GCTTTTTACT
*
441289 TTATTTTATATTTT-ATATTTTATATAAAATATAAAATAA
1 TTATTTTATATTTTAATAATTTATATAAAATAT-AAATAA
* *
441328 TTATTTTATATTTTAATAAATTTA-A-ATAATATTAATAA
1 TTATTTTATATTTTAAT-AATTTATATAAAATATAAATAA
*
441366 TT-TATTAT-TTTTAA
1 TTATTTTATATTTTAA
441380 ATATATTATT
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
36 6 0.13
37 5 0.11
38 7 0.15
39 20 0.43
40 3 0.07
41 5 0.11
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (39 bp):
TTATTTTATATTTTAATAATTTATATAAAATATAAATAA
Found at i:441425 original size:23 final size:23
Alignment explanation
Indices: 441347--441423 Score: 91
Period size: 23 Copynumber: 3.1 Consensus size: 23
441337 ATTTTAATAA
*
441347 ATTTAAATAATATTAATAATTTATT
1 ATTTAAAT-ATATTAATAA-TAATT
*
441372 ATTTTTAAATATATTATTAATAATT
1 A--TTTAAATATATTAATAATAATT
441397 ATTTAAATATATTAATAATAATCT
1 ATTTAAATATATTAATAATAAT-T
441421 ATT
1 ATT
441424 AATAATAACT
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
23 20 0.43
24 4 0.09
25 6 0.13
26 9 0.20
27 7 0.15
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (23 bp):
ATTTAAATATATTAATAATAATT
Found at i:441431 original size:37 final size:37
Alignment explanation
Indices: 441379--441470 Score: 121
Period size: 37 Copynumber: 2.5 Consensus size: 37
441369 ATTATTTTTA
* *
441379 AATATATTATTAATAATTATTTAAATATATTAATAAT
1 AATATATTAATAATAATTATTTAAATATATTAACAAT
* * *
441416 AATCTATTAATAATAACTATTTAAATATGTTAACAAT
1 AATATATTAATAATAATTATTTAAATATATTAACAAT
**
441453 AATATAAAAATAATAATT
1 AATATATTAATAATAATT
441471 TTGTTTAATT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.42
Consensus pattern (37 bp):
AATATATTAATAATAATTATTTAAATATATTAACAAT
Found at i:441439 original size:14 final size:14
Alignment explanation
Indices: 441406--441436 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
441396 TATTTAAATA
441406 TATTAATAATAATC
1 TATTAATAATAATC
441420 TATTAATAATAA-C
1 TATTAATAATAATC
441433 TATT
1 TATT
441437 TAAATATGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (14 bp):
TATTAATAATAATC
Found at i:443527 original size:11 final size:11
Alignment explanation
Indices: 443511--443541 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
443501 GCAATATCTG
443511 ACAAATCTCAA
1 ACAAATCTCAA
443522 ACAAATCTCAA
1 ACAAATCTCAA
443533 ACAAATCTC
1 ACAAATCTC
443542 TTATGGGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.52, C:0.29, G:0.00, T:0.19
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:443886 original size:7 final size:7
Alignment explanation
Indices: 443876--443910 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
443866 AATGAATTTT
443876 AAATAAA
1 AAATAAA
443883 AAATAAA
1 AAATAAA
443890 AAAT-AA
1 AAATAAA
443896 AAAT-AA
1 AAATAAA
443902 AAATAAA
1 AAATAAA
443909 AA
1 AA
443911 GTTAGGGCGT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 12 0.44
7 15 0.56
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (7 bp):
AAATAAA
Found at i:443897 original size:6 final size:6
Alignment explanation
Indices: 443876--443910 Score: 52
Period size: 6 Copynumber: 5.5 Consensus size: 6
443866 AATGAATTTT
443876 AAATAAA AAATAAA AAATAA AAATAA AAATAA AAA
1 AAAT-AA AAAT-AA AAATAA AAATAA AAATAA AAA
443911 GTTAGGGCGT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 17 0.61
7 11 0.39
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAATAA
Found at i:443899 original size:13 final size:13
Alignment explanation
Indices: 443876--443910 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
443866 AATGAATTTT
443876 AAATAAAAAATAA
1 AAATAAAAAATAA
443889 AAA-ATAAAAATAA
1 AAATA-AAAAATAA
443902 AAATAAAAA
1 AAATAAAAA
443911 GTTAGGGCGT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
12 1 0.05
13 18 0.90
14 1 0.05
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (13 bp):
AAATAAAAAATAA
Found at i:446430 original size:19 final size:19
Alignment explanation
Indices: 446403--446522 Score: 118
Period size: 19 Copynumber: 6.2 Consensus size: 19
446393 AATATCAAGC
446403 AATATATAAATAATCATGCA
1 AATA-ATAAATAATCATGCA
* * * *
446423 ATTAATAATTAATTATACA
1 AATAATAAATAATCATGCA
* *
446442 AGTAAT-AATCAATCATGTA
1 AATAATAAAT-AATCATGCA
*
446461 AATAATAATTAATCATGCA
1 AATAATAAATAATCATGCA
446480 AATAATAAATAATCATGCA
1 AATAATAAATAATCATGCA
*
446499 AATATATTAAA-AGTCATGCA
1 AATA-A-TAAATAATCATGCA
446519 AATA
1 AATA
446523 TATTTACTAT
Statistics
Matches: 82, Mismatches: 14, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
18 2 0.02
19 58 0.71
20 18 0.22
21 4 0.05
ACGTcount: A:0.53, C:0.09, G:0.06, T:0.32
Consensus pattern (19 bp):
AATAATAAATAATCATGCA
Found at i:446456 original size:38 final size:38
Alignment explanation
Indices: 446403--446502 Score: 130
Period size: 38 Copynumber: 2.6 Consensus size: 38
446393 AATATCAAGC
* *
446403 AATATATAAATAATCATGCAATTAATAATTAATTATACA
1 AATA-ATAAATAATCATGCAAATAATAATTAATCATACA
* * *
446442 AGTAAT-AATCAATCATGTAAATAATAATTAATCATGCA
1 AATAATAAAT-AATCATGCAAATAATAATTAATCATACA
446480 AATAATAAATAATCATGCAAATA
1 AATAATAAATAATCATGCAAATA
446503 TATTAAAAGT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
37 3 0.06
38 43 0.83
39 6 0.12
ACGTcount: A:0.54, C:0.09, G:0.05, T:0.32
Consensus pattern (38 bp):
AATAATAAATAATCATGCAAATAATAATTAATCATACA
Found at i:447708 original size:18 final size:18
Alignment explanation
Indices: 447685--447757 Score: 67
Period size: 18 Copynumber: 4.1 Consensus size: 18
447675 ATTGACTTTT
* *
447685 AATTAAAAATAAAATCCA
1 AATTAAAATTAAAATCAA
* *
447703 AATTAATATTAAAATAAA
1 AATTAAAATTAAAATCAA
*
447721 AATTAACATTAAAATCAA
1 AATTAAAATTAAAATCAA
* * *
447739 AGTTCAAATCAAAAT-AA
1 AATTAAAATTAAAATCAA
447756 AA
1 AA
447758 AATTACAATC
Statistics
Matches: 44, Mismatches: 11, Indels: 1
0.79 0.20 0.02
Matches are distributed among these distances:
17 3 0.07
18 41 0.93
ACGTcount: A:0.64, C:0.08, G:0.01, T:0.26
Consensus pattern (18 bp):
AATTAAAATTAAAATCAA
Found at i:448107 original size:42 final size:42
Alignment explanation
Indices: 448027--448292 Score: 218
Period size: 42 Copynumber: 6.1 Consensus size: 42
448017 AATTTTTCAA
* *
448027 AAAAATAAAATGCTC-CCTTACAACTAAAGCACTAAAACTTTTG
1 AAAAATAAAATGCTCTCC--ACAACTGAGGCACTAAAACTTTTG
* * *
448070 AAAAATAAAATGCTCTCCACAACTAAGGCATTGAAACTTTTG
1 AAAAATAAAATGCTCTCCACAACTGAGGCACTAAAACTTTTG
* * **
448112 AAAAAAATAAAATACT-TCCTTACAATTGAGGCA-TTGAACTTTT-
1 --AAAAATAAAATGCTCTCC--ACAACTGAGGCACTAAAACTTTTG
* * * *
448155 AAATAATAAAATGCTCCTTCATAATTGAGGCATTAAAACTTTTG
1 AAA-AATAAAATGCT-CTCCACAACTGAGGCACTAAAACTTTTG
*
448199 AAAAAAAATAAAATGCTCCCCCACAACTGAGGCACTAAAACTTTTG
1 ---AAAAATAAAATGCT-CTCCACAACTGAGGCACTAAAACTTTTG
* * **
448245 AAAAATAAAATGCTCATTCA-AAATGAGGCACTGGAACTTTTG
1 AAAAATAAAATGCTC-TCCACAACTGAGGCACTAAAACTTTTG
448287 AAAAAT
1 AAAAAT
448293 GAGCTACTCC
Statistics
Matches: 186, Mismatches: 23, Indels: 29
0.78 0.10 0.12
Matches are distributed among these distances:
41 3 0.02
42 68 0.37
43 42 0.23
44 25 0.13
45 10 0.05
46 35 0.19
47 3 0.02
ACGTcount: A:0.45, C:0.17, G:0.11, T:0.27
Consensus pattern (42 bp):
AAAAATAAAATGCTCTCCACAACTGAGGCACTAAAACTTTTG
Found at i:448133 original size:87 final size:86
Alignment explanation
Indices: 448007--448291 Score: 331
Period size: 87 Copynumber: 3.3 Consensus size: 86
447997 TTCCTCAATA
* * * * *
448007 GAGGCTTTGAAATTTTTCAAAAAAATAAAATGCTCCCTTACAACTAAAGCACTAAAACTTTTGAA
1 GAGGCATTGAAACTTTTGAAAAAAATAAAATGCTCCCTTACAACTGAGGCACTAAAACTTTTGAA
* *
448072 AAATAAAATGCTCTCCACAACT
66 AAATAAAATGCTCTTCA-AAAT
* * * * **
448094 AAGGCATTGAAACTTTTGAAAAAAATAAAATACTTCCTTACAATTGAGGCA-TTGAACTTTT-AA
1 GAGGCATTGAAACTTTTGAAAAAAATAAAATGCTCCCTTACAACTGAGGCACTAAAACTTTTGAA
*
448157 ATAATAAAATGCTCCTTCATAATT
66 A-AATAAAATGCT-CTTCA-AAAT
* **
448181 GAGGCATTAAAACTTTTGAAAAAAAATAAAATGCTCCCCCACAACTGAGGCACTAAAACTTTTGA
1 GAGGCATTGAAACTTTTG-AAAAAAATAAAATGCTCCCTTACAACTGAGGCACTAAAACTTTTGA
448246 AAAATAAAATGCTCATTCAAAAT
65 AAAATAAAATGCTC-TTCAAAAT
* *
448269 GAGGCACTGGAACTTTTGAAAAA
1 GAGGCATTGAAACTTTTGAAAAA
448292 TGAGCTACTC
Statistics
Matches: 165, Mismatches: 27, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
85 3 0.02
86 19 0.12
87 70 0.42
88 47 0.28
89 23 0.14
90 3 0.02
ACGTcount: A:0.44, C:0.17, G:0.12, T:0.28
Consensus pattern (86 bp):
GAGGCATTGAAACTTTTGAAAAAAATAAAATGCTCCCTTACAACTGAGGCACTAAAACTTTTGAA
AAATAAAATGCTCTTCAAAAT
Found at i:454954 original size:22 final size:24
Alignment explanation
Indices: 454928--454973 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 24
454918 TGTAAGAACT
454928 AAAATTTAAA-GAAAAC-AAAATA
1 AAAATTTAAATGAAAACTAAAATA
454950 AAAATTTAAATTGAAAACTAAAAT
1 AAAATTTAAA-TGAAAACTAAAAT
454974 TGCATAACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 10 0.48
24 6 0.29
25 5 0.24
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.24
Consensus pattern (24 bp):
AAAATTTAAATGAAAACTAAAATA
Found at i:456227 original size:22 final size:22
Alignment explanation
Indices: 456176--456227 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
456166 GTTAACAGCT
*
456176 AAGAAAATGTAAAAAACAGTAA
1 AAGAAAATGCAAAAAACAGTAA
* *
456198 ATGTAAATGCAAGAAAACA-TAA
1 AAGAAAATGCAA-AAAACAGTAA
456220 AAGAAAAT
1 AAGAAAAT
456228 TTTAACTCCT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
22 18 0.75
23 6 0.25
ACGTcount: A:0.65, C:0.06, G:0.13, T:0.15
Consensus pattern (22 bp):
AAGAAAATGCAAAAAACAGTAA
Found at i:459698 original size:20 final size:20
Alignment explanation
Indices: 459632--459700 Score: 58
Period size: 20 Copynumber: 3.6 Consensus size: 20
459622 TTAGAGTAGC
*
459632 TTACATTTGCATAGGCTTTTA
1 TTACATTTGCATA-GCTTTAA
*
459653 TT-CATATG--T-GCTTTAA
1 TTACATTTGCATAGCTTTAA
*
459669 -TGCATGTTGCATAGCTTTAA
1 TTACAT-TTGCATAGCTTTAA
459689 TTACATTTGCAT
1 TTACATTTGCAT
459701 GTTTCATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 13
0.69 0.07 0.24
Matches are distributed among these distances:
15 1 0.03
16 9 0.24
17 2 0.05
18 1 0.03
19 1 0.03
20 18 0.47
21 6 0.16
ACGTcount: A:0.25, C:0.14, G:0.14, T:0.46
Consensus pattern (20 bp):
TTACATTTGCATAGCTTTAA
Found at i:459726 original size:27 final size:27
Alignment explanation
Indices: 459653--459727 Score: 65
Period size: 27 Copynumber: 2.9 Consensus size: 27
459643 TAGGCTTTTA
459653 TTCATATGTGCTTT-A---ATGCATGT
1 TTCATATGTGCTTTAATTCATGCATGT
*
459676 TGCATA---GCTTTAATTACATTTGCATGT
1 TTCATATGTGCTTTAATT-CA--TGCATGT
459703 TTCATATGTGCTTTAATTCATGCAT
1 TTCATATGTGCTTTAATTCATGCAT
459728 AGGCATCAAG
Statistics
Matches: 40, Mismatches: 2, Indels: 16
0.69 0.03 0.28
Matches are distributed among these distances:
20 5 0.12
21 1 0.03
23 5 0.12
25 1 0.03
27 17 0.43
29 2 0.05
30 9 0.22
ACGTcount: A:0.24, C:0.15, G:0.15, T:0.47
Consensus pattern (27 bp):
TTCATATGTGCTTTAATTCATGCATGT
Found at i:468200 original size:16 final size:16
Alignment explanation
Indices: 468161--468192 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
468151 AATCCCATCC
468161 TATTATTTTTATTATT
1 TATTATTTTTATTATT
468177 TATTATTTTTA-TATT
1 TATTATTTTTATTATT
468192 T
1 T
468193 TTTAATTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (16 bp):
TATTATTTTTATTATT
Found at i:477556 original size:3 final size:3
Alignment explanation
Indices: 477548--477606 Score: 118
Period size: 3 Copynumber: 19.7 Consensus size: 3
477538 AAATTTATGC
477548 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
477596 ATA ATA ATA AT
1 ATA ATA ATA AT
477607 GACAATGATG
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:478345 original size:24 final size:25
Alignment explanation
Indices: 478313--478360 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
478303 TAATAAATGA
*
478313 TTATCA-TTTACAAAGAGTGTTATT
1 TTATCATTTTACAAAGAATGTTATT
* *
478337 TTATTATTTTAGAAAGAATGTTAT
1 TTATCATTTTACAAAGAATGTTAT
478361 GATAAATCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 5 0.25
25 15 0.75
ACGTcount: A:0.35, C:0.04, G:0.12, T:0.48
Consensus pattern (25 bp):
TTATCATTTTACAAAGAATGTTATT
Found at i:485679 original size:41 final size:40
Alignment explanation
Indices: 485595--485689 Score: 104
Period size: 41 Copynumber: 2.3 Consensus size: 40
485585 TTTTTATTCC
***
485595 TTTTTTTATTTGTTTCTTTATTTTTGAAACTTATTATTTTT
1 TTTTTTTATTT-TTTCTTTATTTTTGAAACTTATTAAAATT
485636 TTTGTTTTATTTTTT-TTTAAGTTTTT-AAACTTATTAAAATT
1 TTT-TTTTATTTTTTCTTT-A-TTTTTGAAACTTATTAAAATT
*
485677 TTTTTTTGTTTTT
1 TTTTTTTATTTTT
485690 GAATAAAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
40 12 0.26
41 22 0.47
42 13 0.28
ACGTcount: A:0.19, C:0.03, G:0.05, T:0.73
Consensus pattern (40 bp):
TTTTTTTATTTTTTCTTTATTTTTGAAACTTATTAAAATT
Found at i:485741 original size:17 final size:16
Alignment explanation
Indices: 485721--485784 Score: 58
Period size: 17 Copynumber: 3.8 Consensus size: 16
485711 AATATGCAAT
485721 AAAAATAAATAATTAA
1 AAAAATAAATAATTAA
*
485737 GAAAAATCAAAAAATTGAA
1 -AAAAAT-AAATAATT-AA
*
485756 AAAAATAAATTAA-AAA
1 AAAAATAAA-TAATTAA
485772 TAAAAATAAATAA
1 -AAAAATAAATAA
485785 AATTAGAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
16 5 0.12
17 18 0.45
18 15 0.38
19 2 0.05
ACGTcount: A:0.75, C:0.02, G:0.03, T:0.20
Consensus pattern (16 bp):
AAAAATAAATAATTAA
Found at i:485752 original size:18 final size:17
Alignment explanation
Indices: 485721--485764 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
485711 AATATGCAAT
*
485721 AAAAATAAATAATT-AA
1 AAAAATAAAAAATTGAA
485737 GAAAAATCAAAAAATTGAA
1 -AAAAAT-AAAAAATTGAA
485756 AAAAATAAA
1 AAAAATAAA
485765 TTAAAAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 9 0.38
18 13 0.54
19 2 0.08
ACGTcount: A:0.75, C:0.02, G:0.05, T:0.18
Consensus pattern (17 bp):
AAAAATAAAAAATTGAA
Found at i:485770 original size:21 final size:23
Alignment explanation
Indices: 485746--485795 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 23
485736 AGAAAAATCA
*
485746 AAAAATTGAAAA-AAAT-AAATT
1 AAAAATTAAAAATAAATAAAATT
485767 AAAAA-TAAAAATAAATAAAATT
1 AAAAATTAAAAATAAATAAAATT
485789 AGAAAAT
1 A-AAAAT
485796 AGAAGGAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 5 0.21
21 9 0.38
22 6 0.25
23 4 0.17
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.22
Consensus pattern (23 bp):
AAAAATTAAAAATAAATAAAATT
Found at i:485787 original size:22 final size:21
Alignment explanation
Indices: 485754--485796 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
485744 CAAAAAATTG
485754 AAAAAAATAAATTA-AAAATA
1 AAAAAAATAAATTAGAAAATA
485774 AAAATAAATAAAATTAGAAAATA
1 AAAA-AAAT-AAATTAGAAAATA
485797 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.20
21 4 0.20
22 6 0.30
23 6 0.30
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (21 bp):
AAAAAAATAAATTAGAAAATA
Found at i:485794 original size:17 final size:17
Alignment explanation
Indices: 485756--485796 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
485746 AAAAATTGAA
485756 AAAAATAAATTAAAAAT
1 AAAAATAAATTAAAAAT
*
485773 AAAAATAAA-TAAAATT
1 AAAAATAAATTAAAAAT
485789 AGAAAATA
1 A-AAAATA
485797 GAAGGAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 7 0.32
17 15 0.68
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (17 bp):
AAAAATAAATTAAAAAT
Found at i:486640 original size:3 final size:3
Alignment explanation
Indices: 486634--486678 Score: 74
Period size: 3 Copynumber: 15.3 Consensus size: 3
486624 AAGAAAGGAA
*
486634 AAT AAT AAT AAT AAT AAC AAT AA- AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
486679 TGATATAATA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
2 2 0.05
3 37 0.95
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:486662 original size:20 final size:20
Alignment explanation
Indices: 486637--486676 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
486627 AAAGGAAAAT
486637 AATAATAATAATAACAATAA
1 AATAATAATAATAACAATAA
*
486657 AATAATAATAATAATAATAA
1 AATAATAATAATAACAATAA
486677 TATGATATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.28
Consensus pattern (20 bp):
AATAATAATAATAACAATAA
Found at i:486662 original size:23 final size:23
Alignment explanation
Indices: 486632--486678 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
486622 AGAAGAAAGG
486632 AAAATAATAATAATAATAACAAT
1 AAAATAATAATAATAATAACAAT
*
486655 AAAATAATAATAATAATAATAAT
1 AAAATAATAATAATAATAACAAT
486678 A
1 A
486679 TGATATAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (23 bp):
AAAATAATAATAATAATAACAAT
Found at i:487368 original size:341 final size:333
Alignment explanation
Indices: 486694--487700 Score: 998
Period size: 341 Copynumber: 3.0 Consensus size: 333
486684 TAATACTATA
* * * *
486694 TAATCGCTACGAACGGTAATCAATGAATAAACAATTATG--TAATAACAACAG-AAAAAAATTGA
1 TAATCACTACGAACGGTAATCAATGAATAAATAATTATGTATAATAATAACAGAAAAAAAATCGA
* * * ** *
486756 AAACTAAAAAAAACGTGGGGTGTAACACCATGACTTCCTAAGAGGTCACCCATCCTAGTACTACT
66 AAATTAAAAAGAACGTGGGGTGCAACATAAGGACTTCCTAAGAGGTCACCCATCCTAGTACTACT
* * * * * * * * * **
486821 TTTACCTAAGAATGTTTAACCACAGAGTTCTGATGGGATCTAATGCTTTAGTGCTAATATGATTG
131 CTTACCAAAGCACGCTTAACTACAGAGTTTTGAAGGGATCCAATGCTTTAGTGCTGGTATGATTG
* * ** * *
486886 CACCTATCATTTCTTGAATGAATTATATATCTGACCTTTCA-TTTCCTATACATTG-TGTGATAC
196 CACCCATCGTTTCTTGTGTGAATTATATATCTGACC-TTCATTTTCCAATGCATTGCT-TGATAC
* * * * *
486949 ATCACACGTAACCCCCCATCCC-TGTAATTTTACGCTATGCCAAAAAAGGGATCATCGATTTCTT
259 ATCACACGCAA-GCCCCGTCCCATG--ATTTTATGCTATGCCAAAAAA-GGTTCATCGATTTCTT
* *
487013 GATTCATTACTGAT
320 GAGTCATCACTGAT
* *
487027 TAATCACTACGAACGATAATCAATGAATAAATAATTATGTATATAGTAATAATTATGGAAAAAAA
1 TAATCACTACGAACGGTAATCAATGAATAAATAATTATGTATA-A-TAATAA-CA--GAAAAAAA
* * * *
487092 ATCAAAAATTAAAAAGAACGTGGGGTGCAACATGAGGACTTCCCAAGAGGTCACCCATCCTAGTT
61 ATCGAAAATTAAAAAGAACGTGGGGTGCAACATAAGGACTTCCTAAGAGGTCACCCATCCTAGTA
* * * *
487157 CTACTCTCATCC-AAGCACACTTAATTACAGAGTTTTGAAGGGATCCAATGCTTTAGTGTTGGTA
126 CTACTCTTA-CCAAAGCACGCTTAACTACAGAGTTTTGAAGGGATCCAATGCTTTAGTGCTGGTA
* *
487221 TGATTGCACCCATCGTTTCTTGTGCGAATTATATATCTGACTCTTCATTTTCC-ATGCGTTGCTT
190 TGATTGCACCCATCGTTTCTTGTGTGAATTATATATCTGAC-CTTCATTTTCCAATGCATTGCTT
*
487285 GATACATCACACGCAAGCCCTCGTCTCCATGATTTTGTGCTATGCCAAAAAATGGTTCATCGATT
254 GATACATCACACGCAAGCCC-CGTC-CCATGATTTTATGCTATGCCAAAAAA-GGTTCATCGATT
487350 TCTTGAGTCATCACTGAT
316 TCTTGAGTCATCACTGAT
** * * *
487368 TAATCTA-TAAAAACGGTATTCGACGAATAAATAATTATGTATACAATAATAACA-ACAAACAAA
1 TAATC-ACTACGAACGGTAATCAATGAATAAATAATTATGTAT--AATAATAACAGA-AAA-AAA
* * * * * * *
487431 AACTGAAACTTAAAAAGAACATGGGGTGCAACATAAGGACTTCCTAAAAGGTCACCCCTTCTAAT
61 ATC-GAAAATTAAAAAGAACGTGGGGTGCAACATAAGGACTTCCTAAGAGGTCACCCATCCTAGT
* * * * *
487496 ACTACTCTTACCAAACCACGCTTAACTAC-GAAATTTTGATA-GGATCCAGTGCTTTAATGCCGG
125 ACTACTCTTACCAAAGCACGCTTAACTACAG-AGTTTTGA-AGGGATCCAATGCTTTAGTGCTGG
* * *
487559 TATGATCGCACCCGTTGTTTCTTGTGTGAATTATATATCTGACCCTTC-TTTTCCAATGCATTGC
188 TATGATTGCACCCATCGTTTCTTGTGTGAATTATATATCTGA-CCTTCATTTTCCAATGCATTGC
* * * * *
487623 TCGATACATCACATGCGAGCCCCTGTCCCATCATTTTATGCTACAT-CGAAAAAAGGTTCATCGA
252 TTGATACATCACACGCAAGCCCC-GTCCCATGATTTTATGCT--ATGCCAAAAAAGGTTCATCGA
**
487687 TTTCTCAAGTCATC
314 TTTCTTGAGTCATC
487701 TTCGATTAAT
Statistics
Matches: 560, Mismatches: 85, Indels: 52
0.80 0.12 0.07
Matches are distributed among these distances:
333 36 0.06
335 2 0.00
336 1 0.00
337 6 0.01
338 4 0.01
339 50 0.09
340 182 0.32
341 263 0.47
342 13 0.02
343 3 0.01
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (333 bp):
TAATCACTACGAACGGTAATCAATGAATAAATAATTATGTATAATAATAACAGAAAAAAAATCGA
AAATTAAAAAGAACGTGGGGTGCAACATAAGGACTTCCTAAGAGGTCACCCATCCTAGTACTACT
CTTACCAAAGCACGCTTAACTACAGAGTTTTGAAGGGATCCAATGCTTTAGTGCTGGTATGATTG
CACCCATCGTTTCTTGTGTGAATTATATATCTGACCTTCATTTTCCAATGCATTGCTTGATACAT
CACACGCAAGCCCCGTCCCATGATTTTATGCTATGCCAAAAAAGGTTCATCGATTTCTTGAGTCA
TCACTGAT
Found at i:487717 original size:5 final size:5
Alignment explanation
Indices: 487707--487769 Score: 74
Period size: 5 Copynumber: 11.8 Consensus size: 5
487697 CATCTTCGAT
487707 TAATA TAATA TAATAA TAATA TAATAA TAATA CTATACTA TAATA TAATA
1 TAATA TAATA TAAT-A TAATA TAAT-A TAATA -TA-A-TA TAATA TAATA
487757 TAATA TAA-A TAAT
1 TAATA TAATA TAAT
487770 TAAACTCTAT
Statistics
Matches: 52, Mismatches: 0, Indels: 12
0.81 0.00 0.19
Matches are distributed among these distances:
4 4 0.08
5 30 0.58
6 13 0.25
7 3 0.06
8 2 0.04
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (5 bp):
TAATA
Found at i:487993 original size:130 final size:130
Alignment explanation
Indices: 487858--492048 Score: 2801
Period size: 130 Copynumber: 32.5 Consensus size: 130
487848 ATTACCTATT
* ** ** *
487858 TTATAATTATTTACTAAATAATCTACTACAAAATTATAAAAATACCCCTTCCATTATATGATAAG
1 TTATAATTATTTACTAAATAATCTCCTATGAAATTACCAAAATACCCTTTCCATTATATGATAAG
* * * * **
487923 AAGTTAACATGTGACTAAATTGACAATTATGCCCTTATACCATAAAAATGAAAATACCCTTTCTC
66 AAATTGACATGTGACCAAATTGACTATTATGCCCTTATACCATAATTATGAAAATACCCTTTCTC
* * * * * * * * *
487988 TTATAATTGTTAACTGAATAATCGCCTTTGAAATTACCAAAATGCCATTTTCGTTATATGATAAG
1 TTATAATTATTTACTAAATAATCTCCTATGAAATTACCAAAATACCCTTTCCATTATATGATAAG
* * * *
488053 ATATTGACATGTGACCAAATGGACTATTATACCC-T-T---AT-ATTA-CAAAAGTACCACTTT-
66 AAATTGACATGTGACCAAATTGACTATTATGCCCTTATACCATAATTATGAAAA-TACC-CTTTC
488110 T-
129 TC
* * * *
488111 TTATAATTATTTACTAAATAATC-CCATATAAAATTACTAAAATA-CCTTTTCAGTTATGTGATA
1 TTATAATTATTTACTAAATAATCTCC-TATGAAATTACCAAAATACCCTTTCCA-TTATATGATA
* ** * * * * * * * * * *
488174 ATAAGCTAACTTATG-GA-TATATTAAC-ATTGTGGCATCATACCATAAATAT-AAAATACCCCT
64 AGAAATTGAC--ATGTGACCAAATTGACTATTATGCCCTTATACCATAATTATGAAAATACCCTT
488235 TCTC
127 TCTC
** * * * *** *
488239 TTATAATTATTTACTAAATAAT-TGTTTATTAAATTACCAAAATTCCTTTTTTGTTATATGAGAA
1 TTATAATTATTTACTAAATAATCT-CCTATGAAATTACCAAAATACCCTTTCCATTATATGATAA
* * * **
488303 GAAATTGACATGTGACCAAATAT-AATATTACGCTC-TATTACCATAATTACCAAAATTACCC-T
65 GAAATTGACATGTGACCAAAT-TGACTATTATGCCCTTA-TACCATAATTATGAAAA-TACCCTT
* *
488365 CCAC
127 TCTC
* * * * * *
488369 TTATAATTGTTTACTAAATAATCTTCTATGAAATTACTAAAATATCCTTTGCATTAGATGATAAG
1 TTATAATTATTTACTAAATAATCTCCTATGAAATTACCAAAATACCCTTTCCATTATATGATAAG
* * * * *** *
488434 AAATTAACGTGT-AGCCAAATGGACTATTATGCCCTCATACCATAATTAACTAAACACCCTTTCT
66 AAATTGACATGTGA-CCAAATTGACTATTATGCCCTTATACCATAATTATGAAAATACCCTTTCT
488498 C
130 C
* ** * * * * * *
488499 TAATAATTATTTAGGAAATAATCCCCTAGGAAATTACGAAAATAACATTTTCATTATATGAT-AG
1 TTATAATTATTTACTAAATAATCTCCTATGAAATTACCAAAATACCCTTTCCATTATATGATAAG
* ** * * **
488563 AAAATTGATATGTG-CCAAAAGGAATATTATGCCCTTATACTAGT-ATT-TCGAAAATAATC-TT
66 -AAATTGACATGTGACCAAATTGACTATTATGCCCTTATACCA-TAATTAT-GAAAATACCCTTT
*
488624 CTT
128 CTC
* * ** *
488627 TTATAATTATTGAC-AAATAATC-CATTACAAAATTA-CAGAAATAGCCCTTTCCATTATATAAT
1 TTATAATTATTTACTAAATAATCTC-CTATGAAATTACCA-AAATA-CCCTTTCCATTATATGAT
* * * * ** *
488689 AAGAAGTT-ATCATGTGACTAAATTGACTATTATGCTC-T-TACCATAAATACAAAAATACCCAT
63 AAGAAATTGA-CATGTGACCAAATTGACTATTATGCCCTTATACCATAATTATGAAAATACCCTT
488751 TCTC
127 TCTC
* * * * *** *
488755 TTATAATTGTTAACTAAATAATCGCCTGTGAAATTACCAAAACGTCATTTCCATTATATGATAAG
1 TTATAATTATTTACTAAATAATCTCCTATGAAATTACCAAAATACCCTTTCCATTATATGATAAG
* * * * * * *
488820 AAATTGACATGTGGCCAAATTGACTATTATACCCTCATATCATAATTACGAAAATATCCATTT-G
66 AAATTGACATGTGACCAAATTGACTATTATGCCCTTATACCATAATTATGAAAATA-CCCTTTCT
488884 C
130 C
* ** * *** *
488885 TTATAATTATGTAAAAAATAATCTCCTATGAAATTATCAAAATATTGTTTCTATTATATGATAAG
1 TTATAATTATTTACTAAATAATCTCCTATGAAATTACCAAAATACCCTTTCCATTATATGATAAG
* * ** * * * * * * *
488950 AAGTTAACATACGGCTAAATTGACTATTGTGCCATCATACCATAAATATGAAAATACCCCTTCTT
66 AAATTGACATGTGACCAAATTGACTATTATGCCCTTATACCATAATTATGAAAATACCCTTTC-T
*
489015 T
130 C
* * * * * *
489016 TTATAATTATTTGCTAAATAATCACATATGAAATTACCAACATACCATTGT-CGTTATATGATAA
1 TTATAATTATTTACTAAATAATCTCCTATGAAATTACCAAAATACCCTT-TCCATTATATGATAA
* * * ** *
489080 GAAATTGAAATGTGGCCAAA-TGAACTATTATGCCCTCATACCATAATTACAAAAATACCCCTTC
65 GAAATTGACATGTGACCAAATTG-ACTATTATGCCCTTATACCATAATTATGAAAATACCCTTTC
*
489144 TT
129 TC
* * * ** * *
489146 TTACAATTAATTACTAAA-AATCTCCCACAAAATTACCAAAATAACCTTTCCAATATATGATAAG
1 TTATAATTATTTACTAAATAATCTCCTATGAAATTACCAAAATACCCTTTCCATTATATGATAAG
* * *
489210 AAATTGACATGTGACCAAA-TGAACTATTATGCCATTATACCATAATTATCAAAATA---TTCCT
66 AAATTGACATGTGACCAAATTG-ACTATTATGCCCTTATACCATAATTATGAAAATACCCTTTCT
489271 C
130 C
* * * *** *
489272 TTATAATTATTTACTAAATAATAC-CTTATCAAATTACCAAAATACCATTTTTGTTTTATGATAA
1 TTATAATTATTTACTAAATAAT-CTCCTATGAAATTACCAAAATACCCTTTCCATTATATGATAA
* * * * * ** *
489336 GAAGTTAACATGT-AGCCAAATTGACTATTATGTCTTTAGACCATAATTACAAAAATACCTTTTC
65 GAAATTGACATGTGA-CCAAATTGACTATTATGCCCTTATACCATAATTATGAAAATACCCTTTC
*
489400 TT
129 TC
* * * * *
489402 TTATAGTTATTTACT-AA-AATCACCTATAAAATTACTAAAATGCCCTTTCCATTATATGATAAG
1 TTATAATTATTTACTAAATAATCTCCTATGAAATTACCAAAATACCCTTTCCATTATATGATAAG
* * * *
489465 AAATTGACATGTGACAAAATGGACAATTATG-CCTCTATATCATAATTATGAAAATA-CCTCTTC
66 AAATTGACATGTGACCAAATTGACTATTATGCCCT-TATACCATAATTATGAAAATACCCT-TTC
489528 TC
129 TC
* * * * * ** * ** *
489530 TTAAAAATATTTACTAGATAATCACCTATGAAATTACAAAAATGGCTTTTCTGTTTTATGATAAG
1 TTATAATTATTTACTAAATAATCTCCTATGAAATTACCAAAATACCCTTTCCATTATATGATAAG
* * * * * *
489595 AAATTGAGATGTGGA-CAACTAGACAATTATG-CCTTCATATCATAATTATAAAAATACCCCTTT
66 AAATTGACATGT-GACCAAATTGACTATTATGCCCTT-ATACCATAATTATGAAAATA-CCCTTT
*
489658 -TA
128 CTC
* * * * * ** * * *
489660 TTCTAATTATTTGCTAAACAATTTCATATGAAATTACCAAAATACTATTTACATTATATGAAAAT
1 TTATAATTATTTACTAAATAATCTCCTATGAAATTACCAAAATACCCTTTCCATTATATGATAAG
* * * * * * * *
489725 AAGTTAACTTGTGACTAAATTAACTATTATGGCCTCA-ATCCATAAATATGAAAATACCCCTTT-
66 AAATTGACATGTGACCAAATTGACTATTATGCCCTTATA-CCATAATTATGAAAATA-CCCTTTC
489788 TC
129 TC
* ** * * * *
489790 TTATAATTATTTACAAAATAAT-TTTTATTAATTTACCAAAATGCCCTGTT-CGTTATATGATAA
1 TTATAATTATTTACTAAATAATCTCCTATGAAATTACCAAAATACCCT-TTCCATTATATGATAA
** * * * * *
489853 GAAATTGACAAATGGCCAAATGGACTATAATGCACTTATACCATAATTATGAAAATACCCATTCT
65 GAAATTGACATGTGACCAAATTGACTATTATGCCCTTATACCATAATTATGAAAATACCCTTTCT
489918 C
130 C
* * * * * * ** *
489919 TTACAATTATCTACTAATTAATC-CCTCAAGGAATTTCCAAAATGTCCTTTCCATTATATAATAA
1 TTATAATTATTTACTAAATAATCTCCT-ATGAAATTACCAAAATACCCTTTCCATTATATGATAA
* * * * * * ** *
489983 GAAACTGACAT-TTAGCTAAATGGACTATTTTGCCCTTTTGGCATAATTATGAAAATACCCATTC
65 GAAATTGACATGTGA-CCAAATTGACTATTATGCCCTTATACCATAATTATGAAAATACCCTTTC
490047 TC
129 TC
* * * *
490049 TTATAATTATTTACTAAATAATCACCTATAAAATTA-CAAAATACCATTTCCATTATATAATAAG
1 TTATAATTATTTACTAAATAATCTCCTATGAAATTACCAAAATACCCTTTCCATTATATGATAAG
* * * * ** *
490113 AAATTGATATGCT-ACCAAATGGTCTATTATG-CCTGCATATTATAATTACGAAAATA--C-TTC
66 AAATTGACATG-TGACCAAATTGACTATTATGCCCT-TATACCATAATTATGAAAATACCCTTTC
490173 TC
129 TC
* * * * * **
490175 GGTTATAACTATTTATTAAATAATC-CTTATGAAATTACCAAAAT-GCCTATTACATTATAAAAT
1 --TTATAATTATTTACTAAATAATCTCCTATGAAATTACCAAAATACCCT-TTCCATTATATGAT
* * * * * * *
490238 AAGAAATTGACATGTAACCAAATGGATTGTTATGCCCTTATATCATAATTACGAAAGTACCCATT
63 AAGAAATTGACATGTGACCAAATTGACTATTATGCCCTTATACCATAATTATGAAAATACCC-TT
490303 T-TC
127 TCTC
* * * *
490306 TTATAATTATTTACTAAATAAT-TCCCTATGAAATTACCAAAGTACGCTTTTCGTTATATGATAA
1 TTATAATTATTTACTAAATAATCT-CCTATGAAATTACCAAAATACCCTTTCCATTATATGATAA
* * * * * * *
490370 GAAATTGACATGTGGCCAAATTGACAATTATACCCTTATATCATAGTTACGAAAATA-CC-ATCT
65 GAAATTGACATGTGACCAAATTGACTATTATGCCCTTATACCATAATTATGAAAATACCCTTTCT
*
490433 T
130 C
* * * * * *
490434 TTATAATTATTTACAAAATAATC-CCTTGTGAATTTACCAAAATACCTTTTCAATTATGTGATAA
1 TTATAATTATTTACTAAATAATCTCC-TATGAAATTACCAAAATACCCTTTCCATTATATGATAA
* * * * * * ** * * *
490498 GAAGTTAACATGTGGCTAAATTAACTATTGTGCTATCATACCATAAATATGAAAATACCCCTTCT
65 GAAATTGACATGTGACCAAATTGACTATTATGCCCTTATACCATAATTATGAAAATACCCTTTCT
490563 C
130 C
** * * *** *
490564 TTATAATTATTTACTAAATAAT-TATTTATTAAATTACCAAAATTCCCTTTTTGTTATATGATCA
1 TTATAATTATTTACTAAATAATCT-CCTATGAAATTACCAAAATACCCTTTCCATTATATGATAA
* ** * * * *
490628 GAAATTGACATGTGACCATACGGATTATTATGCCC-TATTAACATAATTATCAAAATTGCCC--T
65 GAAATTGACATGTGACCAAATTGACTATTATGCCCTTA-TACCATAATTATGAAAA-TACCCTTT
490690 CATC
128 C-TC
* * * * ** *
490694 TTTTAATTATTTACTAAATAATC-CTTTATGAAATTACTAAACTACCCTTTGTATTATATCATAA
1 TTATAATTATTTACTAAATAATCTC-CTATGAAATTACCAAAATACCCTTTCCATTATATGATAA
* *** * * * ** *
490758 GAAATTGACATTTG-GTGAATGGACTATTATGCCCCTATACCATAATTACGTTAACACCCTTTTC
65 GAAATTGACATGTGACCAAATTGACTATTATGCCCTTATACCATAATTATGAAAATACCC-TTTC
490822 TC
129 TC
* * ** * *
490824 TAATAATTATCTAGGAAATAATCTCCT-TAGAAATTACCAAAATAACCTTTCCATTATATGGTAA
1 TTATAATTATTTACTAAATAATCTCCTAT-GAAATTACCAAAATACCCTTTCCATTATATGATAA
* * * * * *
490888 GAAATTGACATGTG-CCAAATGGAATATTATGCCCTCATACCATTATTACG-AAATAACC-TTCT
65 GAAATTGACATGTGACCAAATTGACTATTATGCCCTTATACCATAATTATGAAAATACCCTTTCT
*
490950 T
130 C
** * * *
490951 TTATAATTATTTACTAAATAATC-CACTACAAAATTACAAAAATTTCCCTTT-TATTATATGATA
1 TTATAATTATTTACTAAATAATCTC-CTATGAAATTACCAAAA-TACCCTTTCCATTATATGATA
* * * * * * * *
491014 AGAAGTT-ATCATGTGGCTAAATTGACAATTATGCCTTTATA-CATAAATATAAAAATACCCCTT
64 AGAAATTGA-CATGTGACCAAATTGACTATTATGCCCTTATACCATAATTATGAAAATACCCTTT
491077 CTC
128 CTC
* * * * * ** * *
491080 TTATAATTGTTAAATAAATAATCGCATGCGAAATTACCAAAATGCCAGTTT-CATTATATGATAA
1 TTATAATTATTTACTAAATAATCTCCTATGAAATTACCAAAATACC-CTTTCCATTATATGATAA
* * * * * *
491144 GAAATTGACATGTGGCCAAATTGATTATTATACCCTCATATCATAATTACGAAAATACCCTATT-
65 GAAATTGACATGTGACCAAATTGACTATTATGCCCTTATACCATAATTATGAAAATACCCT-TTC
*
491208 TT
129 TC
* * *
491210 TTATAATTATGTACCAAATAATCTCCTATGAAATTACCAAAATACCATTTCCATTATATGATAA-
1 TTATAATTATTTACTAAATAATCTCCTATGAAATTACCAAAATACCCTTTCCATTATATGATAAG
* * * *
491274 AAAGTTAACATGTGACCAAATTGACTATTATG-CCTTCATACCATAAATATGAAAATATCATTTC
66 AAA-TTGACATGTGACCAAATTGACTATTATGCCCTT-ATACCATAATTATGAAAATACCCTTTC
491338 TC
129 TC
* * ** * * *
491340 TTATAATTATTTACAAAATAATCTCCCAAAAAATTACCAAAATGCCC-TTCCTATTATACGATCA
1 TTATAATTATTTACTAAATAATCTCCTATGAAATTACCAAAATACCCTTTCC-ATTATATGATAA
* * * * * * *
491404 GAAATCGATATATGACCAAATGGACTATTATGCCCTCATACCATAACTA-CAAAA-ACACCTATT
65 GAAATTGACATGTGACCAAATTGACTATTATGCCCTTATACCATAATTATGAAAATAC-CCT-TT
491467 CT-
128 CTC
* * * * * * * *
491469 TTGATAATTATTTATTAAATAATC-CCTAAAGTAATTATCAAAATGTCCATTT-TATTATATAAT
1 TT-ATAATTATTTACTAAATAATCTCCT-ATGAAATTACCAAAAT-ACCCTTTCCATTATATGAT
* * * * * * *
491532 AAGAAATTAACATGTGGCCAAATAGATTATTATGCCCTCATACCATAATTATGATAATATCCTTT
63 AAGAAATTGACATGTGACCAAATTGACTATTATGCCCTTATACCATAATTATGAAAATACCCTTT
491597 -TC
128 CTC
* * * * * * * *
491599 TTATAATTATTTACTAAATAATC-CCTTATGAATTTACTAAAACATCATTTGCTTTATATGAAAA
1 TTATAATTATTTACTAAATAATCTCC-TATGAAATTACCAAAATACCCTTTCCATTATATGATAA
* * * * ** * * * * * *
491663 GAAATTTACA-GAAGGCCAAATTGACTAATATGTGCTCATATCACAATTACGAAAATACTCATTC
65 GAAATTGACATG-TGACCAAATTGACTATTATGCCCTTATACCATAATTATGAAAATACCCTTTC
*
491727 TT
129 TC
* * * * * * * ** *
491729 TTATAATTATTTGCTAAATTATCACTTGTGACATTATCAAAATACAATTTCCATTATATGGTAAG
1 TTATAATTATTTACTAAATAATCTCCTATGAAATTACCAAAATACCCTTTCCATTATATGATAAG
** * * *
491794 AAATTGACATGTGACCAAATAAACTATTATTCTCTTATTA-CAAAATTATGAAAATAACCC-TTC
66 AAATTGACATGTGACCAAATTGACTATTATGCCCTTA-TACCATAATTATGAAAAT-ACCCTTTC
491857 TC
129 TC
* * *
491859 TTATAGTTA-TTACTAAATAATC-CCTTATTAAATTACCAAAATACCCTTTTTCATTATATGATA
1 TTATAATTATTTACTAAATAATCTCC-TATGAAATTACCAAAATACCC-TTTCCATTATATGATA
* *** * * * * **
491922 AGAAGTT-ATCATGTGGTAAAATGGACTATTATTCCCTAATATCATAATTACAAAAATA-CCTTT
64 AGAAATTGA-CATGTGACCAAATTGACTATTATGCCCTTATACCATAATTATGAAAATACCCTTT
*
491985 ATC
128 CTC
* * *
491988 TTATAATTATTTACTAAA-AATC-CTCTATAAAATTACCAAAATACCTTTTCCGTTA-ATGATA
1 TTATAATTATTTACTAAATAATCTC-CTATGAAATTACCAAAATACCCTTTCCATTATATGATA
492049 TACATTAAAA
Statistics
Matches: 3144, Mismatches: 757, Indels: 323
0.74 0.18 0.08
Matches are distributed among these distances:
122 13 0.00
123 57 0.02
124 10 0.00
125 9 0.00
126 36 0.01
127 213 0.07
128 502 0.16
129 672 0.21
130 1468 0.47
131 155 0.05
132 9 0.00
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (130 bp):
TTATAATTATTTACTAAATAATCTCCTATGAAATTACCAAAATACCCTTTCCATTATATGATAAG
AAATTGACATGTGACCAAATTGACTATTATGCCCTTATACCATAATTATGAAAATACCCTTTCTC
Found at i:490319 original size:776 final size:769
Alignment explanation
Indices: 487833--492037 Score: 3649
Period size: 776 Copynumber: 5.4 Consensus size: 769
487823 GGGTGTGTAC
* * * * **
487833 ACCATTATTACGAAAATTACC-TATTTTATAATTATTTACTAAATAATCTACTACAAAATTATAA
1 ACCATAATTACGAAAATAACCTTCTTTTATAATTATTTACTAAATAATCCACTACAAAATTACCA
* * * * * *
487897 AAATACCCCTTCCATTATATGATAAGAAGTTAACATGTGACTAAATTGACAATTATGCCCTTATA
66 AAATGCCCTTTCCATTATATAATAAGAAATTATCATGTGACTAAATGGACAATTATGCCCTTATA
* * *
487962 CCATAAAAATGAAAATACCCTTTCTCTTATAATTGTTAACTGAATAATCGCCTTTGAAATTACCA
131 CCATAAATATGAAAATACCC-TTCTCTTATAATTGTTAACTAAATAATCGCCTATGAAATTACCA
* * *
488027 AAATGCCATTTTCGTTATATGATAAGATATTGACATGTGACCAAATGGACTATTATA-CC-C-T-
195 AAATGCC-TTTTCGTTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATACCCTCATA
* * * * *
488088 T-AT-ATTAC-AAAAGTACCACTTTT-TTATAATTATTTACTAAATAATCCCATATAAAATTACT
259 TCATAATTACGAAAA-TACCCCTTTTATTATAATTATTTACAAAATAATCTCATATGAAATTACC
* * * * *
488149 AAAATACCTTTTCAGTTATGTGATAATAAGCTAACTTATG-GA-TATATTAAC-ATTGTGGCATC
323 AAAATA-CTTTTCA-TTATATGATAAGAAGTTAAC--ATGTGACTAAATTAACTATTGT-GCCTC
*
488211 ATACCATAAATAT-AAAATACCCCTTCTCTTATAATTATTTACTAAATAATTGTTTATTAAATTA
383 ATACCATAAATATGAAAATACCCCTTTTCTTATAATTATTTACTAAATAATT-TTTATTAAATTA
* * * * ** * * *
488275 CCAAAATTCCTTTTTTGTTATATGAGAAGAAATTGACATGTGACCAAATATAATATTACGCTC-T
447 CCAAAATGCC-CTTTCGTTATATGATAAGAAATTGACATGTGACCAAATGGACTATTATGCCCTT
* * * * * *
488339 ATTACCATAATTACCAAAATTACCCTCCACTTATAATTGTTTACTAAATAAT-CTTCTATGAAAT
511 A-TACCATAATTA-CAAAAATACCCTTCTCTTATAATTATTTACTAAATAATCCCTC-AAGAAAT
* * * * * *
488403 TACTAAAATATCCTTTGCATTAGATGATAAGAAATTAACGTGTAGCCAAATGGACTATTATGCCC
573 TACCAAAATATCCTTTCCATTATATAATAAGAAATTGACATGT-GCCAAATGGACTATTATGCCC
* *** * * * ** * **
488468 TCATACCATAATTAACTAAACACCCTTTCTCTAATAATTATTTAGGAAATAATCCCCTAGGAAAT
637 TTATACCATAATTATGAAAATACCCATTCTCTTATAATTATTTACTAAATAATCACCTATAAAAT
* * * * * *
488533 TACGAAAATAACATTTTCATTATATGAT-AGAAAATTGATATGTGCCAAAAGGAATATTATGCCC
702 TACCAAAATACCATTTCCATTATATGATAAG-AAATTGACATGTACCAAATGGAATATTATGCCC
*
488597 TTAT
766 TCAT
* * * * *
488601 ACTAGT-ATTTCGAAAATAATCTTCTTTTATAATTATTGAC-AAATAATCCATTACAAAATTA-C
1 ACCA-TAATTACGAAAATAACCTTCTTTTATAATTATTTACTAAATAATCCACTACAAAATTACC
* * * *
488663 AGAAATAGCCCTTTCCATTATATAATAAGAAGTTATCATGTGACTAAATTGACTATTATGCTC-T
65 A-AAAT-GCCCTTTCCATTATATAATAAGAAATTATCATGTGACTAAATGGACAATTATGCCCTT
** *
488727 -TACCATAAATACAAAAATACCCATTCTCTTATAATTGTTAACTAAATAATCGCCTGTGAAATTA
128 ATACCATAAATATGAAAATACCC-TTCTCTTATAATTGTTAACTAAATAATCGCCTATGAAATTA
* * * *
488791 CCAAAACGTCATTTCCATTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATACCCTC
192 CCAAAATG-CCTTTTCGTTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATACCCTC
* * ** * * *
488856 ATATCATAATTACGAAAATATCCATTTGCTTATAATTATGTAAAAAATAATCTCCTATGAAATTA
256 ATATCATAATTACGAAAATACCCCTTTTATTATAATTATTTACAAAATAATCTCATATGAAATTA
* * ** * *
488921 TCAAAATATTGTTTCTATTATATGATAAGAAGTTAACATACGGCTAAATTGACTATTGTGCCATC
321 CCAAAATACT-TTTC-ATTATATGATAAGAAGTTAACATGTGACTAAATTAACTATTGTGCC-TC
* * *** *
488986 ATACCATAAATATGAAAATACCCCTTCTTTTTATAATTATTTGCTAAATAATCACATATGAAATT
383 ATACCATAAATATGAAAATACCCCTT-TTCTTATAATTATTTACTAAATAAT-TTTTATTAAATT
* * * * * *
489051 ACCAACATACCATTGTCGTTATATGATAAGAAATTGAAATGTGGCCAAATGAACTATTATGCCCT
446 ACCAAAATGCCCTT-TCGTTATATGATAAGAAATTGACATGTGACCAAATGGACTATTATGCCCT
* * * *
489116 CATACCATAATTACAAAAATACCCCTTCTTTTACAATTAATTACTAAA-AATCTCC-CACA-AAA
510 TATACCATAATTACAAAAATA-CCCTTCTCTTATAATTATTTACTAAATAATC-CCTCA-AGAAA
* * * *
489178 TTACCAAAATAACCTTTCCAATATATGATAAGAAATTGACATGTGACCAAATGAACTATTATGCC
572 TTACCAAAATATCCTTTCCATTATATAATAAGAAATTGACATGTG-CCAAATGGACTATTATGCC
* * *
489243 ATTATACCATAATTATCAAAAT----ATTCCTCTTATAATTATTTACTAAATAAT-ACCTTATCA
636 CTTATACCATAATTATGAAAATACCCATT-CTCTTATAATTATTTACTAAATAATCACC-TATAA
*** * * * * *
489303 AATTACCAAAATACCATTTTTGTTTTATGATAAGAAGTTAACATGTAGCCAAATTGACTATTATG
699 AATTACCAAAATACCATTTCCATTATATGATAAGAAATTGACATGTA-CCAAATGGAATATTATG
* * * *
489368 TCTTTAG
763 CCCTCAT
* * *
489375 ACCATAATTACAAAAAT-ACCTTTTCTTTTATAGTTATTTACT-AA-AAT-CACCTATAAAATTA
1 ACCATAATTACGAAAATAACC--TTCTTTTATAATTATTTACTAAATAATCCA-CTACAAAATTA
* * *
489436 CTAAAATGCCCTTTCCATTATATGATAAGAAATTGA-CATGTGACAAAATGGACAATTATG-CCT
63 CCAAAATGCCCTTTCCATTATATAATAAGAAATT-ATCATGTGACTAAATGGACAATTATGCCCT
* * * * * * * *
489499 CTATATCATAATTATGAAAATACCTCTTCTCTTAAAAATATTTACTAGATAATCACCTATGAAAT
127 -TATACCATAAATATGAAAATACC-CTTCTCTTATAATTGTTAACTAAATAATCGCCTATGAAAT
* * * * * * * * * *
489564 TACAAAAATGGCTTTTCTGTTTTATGATAAGAAATTGAGATGTGGACAACTAGACAATTATGCCT
190 TACCAAAATGCCTTTTC-GTTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATACCC
** * * * * *
489629 TCATATCATAATTATAAAAATACCCCTTTTATTCTAATTATTTGCTAAACAATTTCATATGAAAT
254 TCATATCATAATTACGAAAATACCCCTTTTATTATAATTATTTACAAAATAATCTCATATGAAAT
* * * *
489694 TACCAAAATACTATTTACATTATATGAAAATAAGTTAACTTGTGACTAAATTAACTATTATGGCC
319 TACCAAAATACT-TTT-CATTATATGATAAGAAGTTAACATGTGACTAAATTAACTATTGT-GCC
* *
489759 TCA-ATCCATAAATATGAAAATACCCCTTTTCTTATAATTATTTACAAAATAATTTTTATTAATT
381 TCATA-CCATAAATATGAAAATACCCCTTTTCTTATAATTATTTACTAAATAATTTTTATTAAAT
** * * *
489823 TACCAAAATGCCCTGTTCGTTATATGATAAGAAATTGACAAATGGCCAAATGGACTATAATGCAC
445 TACCAAAATGCCCT-TTCGTTATATGATAAGAAATTGACATGTGACCAAATGGACTATTATGCCC
** * * * *
489888 TTATACCATAATTATGAAAATACCCATTCTCTTACAATTATCTACTAATTAATCCCTCAAGGAAT
509 TTATACCATAATTACAAAAATACCC-TTCTCTTATAATTATTTACTAAATAATCCCTCAAGAAAT
* * * * * *
489953 TTCCAAAATGTCCTTTCCATTATATAATAAGAAACTGACATTTAGCTAAATGGACTATTTTGCCC
573 TACCAAAATATCCTTTCCATTATATAATAAGAAATTGACATGT-GCCAAATGGACTATTATGCCC
* **
490018 TTTTGGCATAATTATGAAAATACCCATTCTCTTATAATTATTTACTAAATAATCACCTATAAAAT
637 TTATACCATAATTATGAAAATACCCATTCTCTTATAATTATTTACTAAATAATCACCTATAAAAT
* * **
490083 TA-CAAAATACCATTTCCATTATATAATAAGAAATTGATATGCTACCAAATGGTCTATTATG-CC
702 TACCAAAATACCATTTCCATTATATGATAAGAAATTGACATG-TACCAAATGGAATATTATGCCC
490146 TGCAT
766 T-CAT
** * * * * **
490151 ATTATAATTACGAAAAT-A-CTTCTCGGTTATAACTATTTATTAAATAATCC-TTATGAAATTAC
1 ACCATAATTACGAAAATAACCTTCT--TTTATAATTATTTACTAAATAATCCACTACAAAATTAC
* * * * ***
490213 CAAAATG-CCTATTACATTATAAAATAAGAAATTGA-CATGTAACCAAATGGATTGTTATGCCCT
64 CAAAATGCCCT-TTCCATTATATAATAAGAAATT-ATCATGTGACTAAATGGACAATTATGCCCT
* * * * * * *
490276 TATATCATAATTACGAAAGTACCCATTTTCTTATAATTATTTACTAAATAATTC-CCTATGAAAT
127 TATACCATAAATATGAAAATACCC-TTCTCTTATAATTGTTAACTAAATAA-TCGCCTATGAAAT
* * *
490340 TACCAAAGTACGCTTTTCGTTATATGATAAGAAATTGACATGTGGCCAAATTGACAATTATACCC
190 TACCAAAATGC-CTTTTCGTTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATACCC
* * * * * * * *
490405 TTATATCATAGTTACGAAAATA-CCATCTT-TTATAATTATTTACAAAATAATCCCTTGTGAATT
254 TCATATCATAATTACGAAAATACCCCTTTTATTATAATTATTTACAAAATAATCTCATATGAAAT
* * *
490468 TACCAAAATACCTTTTCAATTATGTGATAAGAAGTTAACATGTGGCTAAATTAACTATTGTGCTA
319 TACCAAAATA-CTTTTC-ATTATATGATAAGAAGTTAACATGTGACTAAATTAACTATTGTGC-C
*
490533 TCATACCATAAATATGAAAATACCCCTTCTCTTATAATTATTTACTAAATAATTATTTATTAAAT
381 TCATACCATAAATATGAAAATACCCCTTTTCTTATAATTATTTACTAAATAATT-TTTATTAAAT
* * * * * *
490598 TACCAAAATTCCCTTTTTGTTATATGATCAGAAATTGACATGTGACCATACGGATTATTATGCCC
445 TACCAAAATGCCC-TTTCGTTATATGATAAGAAATTGACATGTGACCAAATGGACTATTATGCCC
* * * * * * *
490663 -TATTAACATAATTATCAAAATTGCCC-TCATCTTTTAATTATTTACTAAATAATCCTTTATGAA
509 TTA-TACCATAATTA-CAAAAATACCCTTC-TCTTATAATTATTTACTAAATAATCCCTCAAGAA
* * * ** * * ***
490726 ATTACTAAACTACCCTTTGTATTATATCATAAGAAATTGACATTTGGTGAATGGACTATTATGCC
571 ATTACCAAAATATCCTTTCCATTATATAATAAGAAATTGACATGTGCCAAATGGACTATTATGCC
* * ** * * * * ** *
490791 CCTATACCATAATTACGTTAACACCCTTTTCTCTAATAATTATCTAGGAAATAATCTCCT-TAGA
636 CTTATACCATAATTATGAAAATACCC-ATTCTCTTATAATTATTTACTAAATAATCACCTATA-A
* *
490855 AATTACCAAAATAACC-TTTCCATTATATGGTAAGAAATTGACATGTGCCAAATGGAATATTATG
699 AATTACCAAAAT-ACCATTTCCATTATATGATAAGAAATTGACATGTACCAAATGGAATATTATG
490919 CCCTCAT
763 CCCTCAT
* *
490926 ACCATTATTACG-AAATAACCTTCTTTTATAATTATTTACTAAATAATCCACTACAAAATTACAA
1 ACCATAATTACGAAAATAACCTTCTTTTATAATTATTTACTAAATAATCCACTACAAAATTACCA
* * * * * * *
490990 AAATTTCCCTTT-TATTATATGATAAGAAGTTATCATGTGGCTAAATTGACAATTATGCCTTTAT
66 AAA-TGCCCTTTCCATTATATAATAAGAAATTATCATGTGACTAAATGGACAATTATGCCCTTAT
* * * **
491054 A-CATAAATATAAAAATACCCCTTCTCTTATAATTGTTAAATAAATAATCGCATGCGAAATTACC
130 ACCATAAATATGAAAATA-CCCTTCTCTTATAATTGTTAACTAAATAATCGCCTATGAAATTACC
* * *
491118 AAAATGCCAGTTTCATTATATGATAAGAAATTGACATGTGGCCAAATTGATTATTATACCCTCAT
194 AAAATGCC-TTTTCGTTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATACCCTCAT
* * * *
491183 ATCATAATTACGAAAATA-CCCTATTTTTTATAATTATGTACCAAATAATCTCCTATGAAATTAC
258 ATCATAATTACGAAAATACCCCT-TTTATTATAATTATTTACAAAATAATCTCATATGAAATTAC
* * * * *
491247 CAAAATACCATTTCCATTATATGATAAAAAGTTAACATGTGACCAAATTGACTATTATGCCTTCA
322 CAAAATA-C-TTTTCATTATATGATAAGAAGTTAACATGTGACTAAATTAACTATTGTGCC-TCA
* * * *** **
491312 TACCATAAATATGAAAATA-TCATTTCTCTTATAATTATTTACAAAATAATCTCCCAAAAAATTA
384 TACCATAAATATGAAAATACCCCTTT-TCTTATAATTATTTACTAAATAAT-TTTTATTAAATTA
* * * * * * * *
491376 CCAAAATGCCCTTCCTATTATACGATCAGAAATCGATATATGACCAAATGGACTATTATGCCCTC
447 CCAAAATGCCCTTTC-GTTATATGATAAGAAATTGACATGTGACCAAATGGACTATTATGCCCTT
* * * * * *
491441 ATACCATAACTACAAAAACACCTATTCT-TTGATAATTATTTATTAAATAATCCCTAAAGTAATT
511 ATACCATAATTACAAAAATACC-CTTCTCTT-ATAATTATTTACTAAATAATCCCTCAAGAAATT
* * * * * *
491505 ATCAAAATGTCCATTT-TATTATATAATAAGAAATTAACATGTGGCCAAATAGATTATTATGCCC
574 ACCAAAATATCC-TTTCCATTATATAATAAGAAATTGACATGT-GCCAAATGGACTATTATGCCC
* * * * * *
491569 TCATACCATAATTATGATAATATCC-TTTTCTTATAATTATTTACTAAATAATC-CCTTATGAAT
637 TTATACCATAATTATGAAAATACCCATTCTCTTATAATTATTTACTAAATAATCACC-TATAAAA
* * * * * * * * * * * *
491632 TTACTAAAACATCATTTGCTTTATATGAAAAGAAATTTACA-GAAGGCCAAATTGACTAATATGT
701 TTACCAAAATACCATTTCCATTATATGATAAGAAATTGACATGTA--CCAAATGGAATATTATGC
*
491696 GCTCAT
764 CCTCAT
* * * * *** *
491702 ATCACAATTACGAAAAT-ACTCATTCTTTTATAATTATTTGCTAAATTAT-CACTTGTGACATTA
1 ACCATAATTACGAAAATAAC-C-TTCTTTTATAATTATTTACTAAATAATCCAC-TACAAAATTA
* * ** ** * ** * * *
491765 TCAAAATACAATTTCCATTATATGGTAAGAAATTGA-CATGTGACCAAATAAACTATTATTCTCT
63 CCAAAATGCCCTTTCCATTATATAATAAGAAATT-ATCATGTGACTAAATGGACAATTATGCCCT
* * *
491829 TATTA-CA-AAATTATGAAAATAACCCTTCTCTTATAGTTATT-ACTAAATAATC-CCTTATTAA
127 TA-TACCATAAA-TATGAAAAT-ACCCTTCTCTTATAATTGTTAACTAAATAATCGCC-TATGAA
* * * ** *
491890 ATTACCAAAATACCCTTTTTCATTATATGATAAGAAGTT-ATCATGTGGTAAAATGGACTATTAT
188 ATTACCAAAAT-GCC-TTTTCGTTATATGATAAGAAATTGA-CATGTGGCCAAATTGACTATTAT
* * * * *
491954 TCCCTAATATCATAATTACAAAAATA--CCTTTATCTTATAATTATTTACTAAA-AATCCTC-TA
250 ACCCTCATATCATAATTACGAAAATACCCCTTT-TATTATAATTATTTACAAAATAAT-CTCATA
*
492015 TAAAATTACCAAAATACCTTTTC
313 TGAAATTACCAAAATA-CTTTTC
492038 CGTTAATGAT
Statistics
Matches: 2782, Mismatches: 529, Indels: 244
0.78 0.15 0.07
Matches are distributed among these distances:
767 110 0.04
768 42 0.02
769 68 0.02
770 1 0.00
771 1 0.00
772 12 0.00
773 235 0.08
774 545 0.20
775 612 0.22
776 676 0.24
777 251 0.09
778 133 0.05
779 95 0.03
780 1 0.00
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (769 bp):
ACCATAATTACGAAAATAACCTTCTTTTATAATTATTTACTAAATAATCCACTACAAAATTACCA
AAATGCCCTTTCCATTATATAATAAGAAATTATCATGTGACTAAATGGACAATTATGCCCTTATA
CCATAAATATGAAAATACCCTTCTCTTATAATTGTTAACTAAATAATCGCCTATGAAATTACCAA
AATGCCTTTTCGTTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATACCCTCATATC
ATAATTACGAAAATACCCCTTTTATTATAATTATTTACAAAATAATCTCATATGAAATTACCAAA
ATACTTTTCATTATATGATAAGAAGTTAACATGTGACTAAATTAACTATTGTGCCTCATACCATA
AATATGAAAATACCCCTTTTCTTATAATTATTTACTAAATAATTTTTATTAAATTACCAAAATGC
CCTTTCGTTATATGATAAGAAATTGACATGTGACCAAATGGACTATTATGCCCTTATACCATAAT
TACAAAAATACCCTTCTCTTATAATTATTTACTAAATAATCCCTCAAGAAATTACCAAAATATCC
TTTCCATTATATAATAAGAAATTGACATGTGCCAAATGGACTATTATGCCCTTATACCATAATTA
TGAAAATACCCATTCTCTTATAATTATTTACTAAATAATCACCTATAAAATTACCAAAATACCAT
TTCCATTATATGATAAGAAATTGACATGTACCAAATGGAATATTATGCCCTCAT
Found at i:490447 original size:904 final size:892
Alignment explanation
Indices: 488209--492029 Score: 2457
Period size: 904 Copynumber: 4.2 Consensus size: 892
488199 CATTGTGGCA
* * * *** **
488209 TCATACCATAAATA-TAAAATACCCCTTCTCTTATAATTATTTACTAAATAATTGTTTATTAAAT
1 TCATACCATAATTACGAAAATA-CCCTTCTTTTATAATTATTTACTAAATAA-TCCCTACAAAAT
* *** * * ** * *
488273 TACCAAAATTCCTTTTTTGTTATATGAGAAGAAATTGACATGTGACCAAATATAATATTACG-CT
64 TA-CAAAATACC-TTTCCATTATATGATAAGAAATTGATATGTGACCAAATGGACTATTATGCCT
* * * * *
488337 CTATTACCATAATTACCAAAATTACCCTCCACTTATAATTGTTTACTAAATAATCTTCTATGAAA
127 -TA-TA-CATAATTA-CAAAA-TA--CTTCTCTTATAATTATTTAATAAATAATCCT-TATGAAA
* * * * * * *
488402 TTACTAAAATATCC--TTTGCATTAGATGATAAGAAATTAACGTGTAGCCAAATGGACTATTATG
184 TTACCAAAAT-GCCAGTTT-CATTATATGATAAGAAATTGACATGTAGCCAAATTGATTATTATG
* * * * * ** * *
488465 CCCTCATACCATAATTAAC-TAAACACCC-TTTCTCTAATAATTATTTAGGAAATAATCCCCTAG
247 CCCTTATATCATAATT-ACGAAAATACCCATTT-TCTTATAATTATTTACTAAATAATCACCTAT
* * * * **
488528 GAAATTACGAAAATAACATTTTCATTATATGAT-AGAAAATTGATATGTG-CCAAAAGGA-ATAT
310 GAAATTACCAAAAT-ACCTTTCCATTATATGATAAG-AAATTGACATGTGACCAAATTGACA-AT
* * * *
488590 TATGCCCTTATA-C-TAGTATT-TCGAAAATAATCTTCTTTTATAATTATTGAC-AAATAATCCA
372 TATG-CCTTATATCATA--ATTAT-GAAAAT-ACCATCTTTTATAATTATTTACAAAATAATCCC
** * * * * * * * * *
488651 TTACAAAATTACAGAAATAGCCCTTTCCATTATATAATAAGAAGTTATCATGTGACTAAATTGAC
432 TTATGAAATTACAAAAATA-CCTTTTCAATTATATGATAAGAAATTAACATGTGGC-AAACTAAC
* * * * * * * * **
488716 TATTATGC--TCTTACCATAAATACAAAAATACCCATTCTCTTATAATTGTTAACTAAATAATCG
495 AATTATGCTATCATACCATAAATATAAAAATACCCCTTCTATTATAATTATTTACTAAACAATTA
** * *** * * * * *
488779 CCTGTGAAATTACCAAAACGTCATTTCCATTATATGATAAGAAATTGACATGTGGCCAAATTG-A
560 TATATGAAATTACCAAAATACCATTTACATTATATGAAAAGAAATTAACATGTGACCAAA-CGAA
* * * * * * * * *
488843 CTATTATACCCTCATATCATAATTA-CGAAAATATCCAT-TTGCTTATAATTATGTAAAAAATAA
624 CTATTATGCCCTAATAACATAAATATC-AAAATACCCCTCAT-CTTATAATTATTTACAAAATAA
* * *** * * * * * *
488906 T-CTCCTATGAAATTATCAAAATATTGTTTCTATTATATGATAAGAAGTTAACATACGGCTAAAT
687 TCCT-TTATGAAATTACCAAAATACCCTTT-GATTATATCATAAGAAATTGACAAATGGC-AAAT
* ** * * * * * * * * * * *
488970 TGACTATTGTGC-CATCATACCATAAATATGAAAATACCC-CTTCTTTTTATAATTATTTGCTAA
749 GGACTATAATGCACCT-ATACCATAATTACGAAAACACCCTATTC-TCTAACAATTATCTACGAA
* * * * * * * *
489033 ATAATCACATATGAAATTACCAACAT-ACCATTGT-CGTTATATGATAAGAAATTGAAATGTGGC
812 ATAATCTCCTAAGAAATTACCAAAATAACC-TT-TCCATTATATAATAAGAAACTGACATGT-GC
489096 CAAAT-GAACTATTATGCCC
874 CAAATGGAA-TATTATGCCC
* * * *
489115 TCATACCATAATTACAAAAATACCCCTTCTTTTACAATTAATTACTAAA-AATCTCCCACAAAAT
1 TCATACCATAATTACGAAAATA-CCCTTCTTTTATAATTATTTACTAAATAATC-CCTACAAAAT
* * *
489179 TACCAAAATAACCTTTCCAATATATGATAAGAAATTGACATGTGACCAAATGAACTATTATGCCA
64 TA-CAAAAT-ACCTTTCCATTATATGATAAGAAATTGATATGTGACCAAATGGACTATTATGCC-
* *
489244 TTATACCATAATTATCAAAATA-TTCCTCTTATAATTATTTACTAAATAATACCTTATCAAATTA
126 TTATA-CATAATTA-CAAAATACTT-CTCTTATAATTATTTAATAAATAAT-CCTTATGAAATTA
* * ** * * * * * *
489308 CCAAAATACCATTTTTGTTTTATGATAAGAAGTTAACATGTAGCCAAATTGACTATTATGTCTTT
187 CCAAAATGCCAGTTTCATTATATGATAAGAAATTGACATGTAGCCAAATTGATTATTATGCCCTT
* * * * *
489373 AGACCATAATTACAAAAATA-CC-TTTTCTTTTATAGTTATTTACT-AA-AATCACCTATAAAAT
252 ATATCATAATTACGAAAATACCCATTTTC--TTATAATTATTTACTAAATAATCACCTATGAAAT
* * * *
489434 TACTAAAATGCCCTTTCCATTATATGATAAGAAATTGACATGTGACAAAATGGACAATTATGCCT
315 TACCAAAAT-ACCTTTCCATTATATGATAAGAAATTGACATGTGACCAAATTGACAATTATGCCT
* * * *
489499 CTATATCATAATTATGAAAATACC-TCTTCTCTTAAAAATATTTACTAGATAATCACC-TATGAA
379 -TATATCATAATTATGAAAATACCATC-T-T-TTATAATTATTTACAAAATAATC-CCTTATGAA
** ** * * *
489562 ATTACAAAAATGGCTTTTCTGTTTTATGATAAGAAATTGAGATGTGG-ACAACTAGACAATTATG
439 ATTACAAAAATACCTTTTCAATTATATGATAAGAAATTAACATGTGGCA-AACTA-ACAATTATG
* * * * *
489626 CCT-TCATATCATAATTATAAAAATACCCCTTTTATTCTAATTATTTGCTAAACAATT-TCATAT
502 -CTATCATACCATAAATATAAAAATACCCCTTCTATTATAATTATTTACTAAACAATTAT-ATAT
* * * * * **
489689 GAAATTACCAAAATACTATTTACATTATATGAAAATAAGTTAACTTGTGACTAAATTAACTATTA
565 GAAATTACCAAAATACCATTTACATTATATGAAAAGAAATTAACATGTGACCAAACGAACTATTA
* * * ** *
489754 TGGCCTCAAT-CCATAAATATGAAAATACCCCTTTTCTTATAATTATTTACAAAATAAT-TTTTA
630 TGCCCT-AATAACATAAATATCAAAATACCCCTCATCTTATAATTATTTACAAAATAATCCTTTA
* * * *
489817 TTAATTTACCAAAATGCCCTGTTCG-TTATATGATAAGAAATTGACAAATGGCCAAATGGACTAT
694 TGAAATTACCAAAATACCCT-TT-GATTATATCATAAGAAATTGACAAATGG-CAAATGGACTAT
* * * * * *
489881 AATGCACTTATACCATAATTATGAAAATACCC-ATTCTCTTACAATTATCTACTAATTAATC-CC
756 AATGCACCTATACCATAATTACGAAAACACCCTATTCTCTAACAATTATCTACGAAATAATCTCC
* * ** * * *
489944 TCAAGGAATTTCCAAAATGTCCTTTCCATTATATAATAAGAAACTGACATTTAGCTAAATGGACT
821 T-AAGAAATTACCAAAATAACCTTTCCATTATATAATAAGAAACTGACATGT-GCCAAATGGAAT
*
490009 ATTTTGCCC
884 ATTATGCCC
** ** * * *
490018 TTTTGGCATAATTATGAAAATACCCATTCTCTTATAATTATTTACTAAATAATCACCTATAAAAT
1 TCATACCATAATTACGAAAATACCC-TTCTTTTATAATTATTTACTAAATAATC-CCTACAAAAT
* *
490083 TACAAAATACCATTTCCATTATATAATAAGAAATTGATATGCT-ACCAAATGGTCTATTATGCCT
64 TACAAAATACC-TTTCCATTATATGATAAGAAATTGATATG-TGACCAAATGGACTATTATGCCT
* * * *
490147 GCATATTATAATTACGAAAATACTTCTCGGTTATAACTATTTATTAAATAATCCTTATGAAATTA
127 -TATA-CATAATTAC-AAAATACTTCTC--TTATAATTATTTAATAAATAATCCTTATGAAATTA
* ** * * *
490212 CCAAAATGCCTA-TTACATTATAAAATAAGAAATTGACATGTAACCAAATGGATTGTTATGCCCT
187 CCAAAATGCC-AGTTTCATTATATGATAAGAAATTGACATGTAGCCAAATTGATTATTATGCCCT
*
490276 TATATCATAATTACGAAAGTACCCATTTTCTTATAATTATTTACTAAATAATTC-CCTATGAAAT
251 TATATCATAATTACGAAAATACCCATTTTCTTATAATTATTTACTAAATAA-TCACCTATGAAAT
* * * * *
490340 TACCAAAGTACGCTTTTCGTTATATGATAAGAAATTGACATGTGGCCAAATTGACAATTATACCC
315 TACCAAAATAC-CTTTCCATTATATGATAAGAAATTGACATGTGACCAAATTGACAATTAT-GCC
* * * *
490405 TTATATCATAGTTACGAAAATACCATCTTTTATAATTATTTACAAAATAATCCCTTGTGAATTTA
378 TTATATCATAATTATGAAAATACCATCTTTTATAATTATTTACAAAATAATCCCTTATGAAATTA
* * * * * *
490470 CCAAAATACCTTTTCAATTATGTGATAAGAAGTTAACATGTGGCTAAATTAACTATTGTGCTATC
443 CAAAAATACCTTTTCAATTATATGATAAGAAATTAACATGTGGC-AAACTAACAATTATGCTATC
* * * * *
490535 ATACCATAAATATGAAAATACCCCTTCTCTTATAATTATTTACTAAATAATTATTTATTAAATTA
507 ATACCATAAATATAAAAATACCCCTTCTATTATAATTATTTACTAAACAATTATATATGAAATTA
* * *** ** * * * *
490600 CCAAAATTCCCTTTTTGTTATATGATCAGAAATTGACATGTGACCATACGGATTATTATGCCCTA
572 CCAAAATACCATTTACATTATATGAAAAGAAATTAACATGTGACCAAACGAACTATTATGCCCTA
* * ** * *
490665 TTAACATAATTATCAAAATTGCCCTCATCTTTTAATTATTTACTAAATAATCCTTTATGAAATTA
637 ATAACATAAATATCAAAATACCCCTCATCTTATAATTATTTACAAAATAATCCTTTATGAAATTA
* * ** ** * *
490730 CTAAACTACCCTTTGTATTATATCATAAGAAATTGACATTTGGTGAATGGACTATTATGCCCCTA
702 CCAAAATACCCTTTG-ATTATATCATAAGAAATTGACAAATGGCAAATGGACTATAATGCACCTA
** * * * *
490795 TACCATAATTACGTTAACACCCTTTTCTCTAATAATTATCTAGGAAATAATCTCCTTAGAAATTA
766 TACCATAATTACGAAAACACCCTATTCTCTAACAATTATCTACGAAATAATCTCCTAAGAAATTA
** *
490860 CCAAAATAACCTTTCCATTATATGGTAAGAAATTGACATGTGCCAAATGGAATATTATGCCC
831 CCAAAATAACCTTTCCATTATATAATAAGAAACTGACATGTGCCAAATGGAATATTATGCCC
* *
490922 TCATACCATTATTACG-AAATAACCTTCTTTTATAATTATTTACTAAATAATCCACTACAAAATT
1 TCATACCATAATTACGAAAATACCCTTCTTTTATAATTATTTACTAAATAATCC-CTACAAAATT
* * * * * * *
490986 ACAAAAATTTCCCTTT-TATTATATGATAAGAAGTT-ATCATGTGGCTAAATTGACAATTATGCC
65 AC-AAAA--TACCTTTCCATTATATGATAAGAAATTGAT-ATGTGACCAAATGGACTATTATGCC
* * * **
491049 TTTATACATAAATATA-AAAATACCCCTTCTCTTATAATTGTTAAATAAATAATCGCATGCGAAA
126 -TTATACAT-AAT-TACAAAATA---CTTCTCTTATAATTATTTAATAAATAATC-CTTATGAAA
* *
491113 TTACCAAAATGCCAGTTTCATTATATGATAAGAAATTGACATGTGGCCAAATTGATTATTATACC
184 TTACCAAAATGCCAGTTTCATTATATGATAAGAAATTGACATGTAGCCAAATTGATTATTATGCC
* * * *
491178 CTCATATCATAATTACGAAAATACCCTATTTT-TTATAATTATGTACCAAATAATCTCCTATGAA
249 CTTATATCATAATTACGAAAATACCC-ATTTTCTTATAATTATTTACTAAATAATCACCTATGAA
* *
491242 ATTACCAAAATACCATTTCCATTATATGATAA-AAAGTTAACATGTGACCAAATTGACTATTATG
313 ATTACCAAAATACC-TTTCCATTATATGATAAGAAA-TTGACATGTGACCAAATTGACAATTATG
* * * * * **
491306 CCTTCATACCATAAATATGAAAATATCATTTCTCTTATAATTATTTACAAAATAATCTCC-CAAA
376 CCTT-ATATCATAATTATGAAAATACCA--TCTTTTATAATTATTTACAAAATAATC-CCTTATG
* * * * * * * ** * * * * *
491370 AAATTACCAAAATGCCCTTCCTATTATACGATCAGAAATCGATATATGACCAAA-TGGACTATTA
437 AAATTACAAAAATACCTTTTCAATTATATGATAAGAAATTAACATGTG-GCAAACT-AACAATTA
** * * * ** * * **
491434 TGCCCTCATACCATAACTACAAAAACACCTATTCT-TTGATAATTATTTATTAAATAATCCCTA-
500 TGCTATCATACCATAAATATAAAAATACCCCTTCTATT-ATAATTATTTACTAAACAAT-TATAT
* * * * * * * *
491497 AAGTAATTATCAAAATGTCCATTT-TATTATAT-AATAAGAAATTAACATGTGGCCAAA-TAGAT
563 ATGAAATTACCAAAAT-ACCATTTACATTATATGAA-AAGAAATTAACATGTGACCAAACGA-AC
* * * * * * ** *
491559 TATTATGCCCTCATACCATAATTATGATAATA-TCCTTTTCTTATAATTATTTACTAAATAATCC
625 TATTATGCCCTAATAACATAAATATCAAAATACCCCTCATCTTATAATTATTTACAAAATAATCC
* * * * * * * * * * *
491623 CTTATGAATTTACTAAAACATCATTTGCTTTATATGAAAAGAAATTTACAGAA-GGCCAAATTGA
690 TTTATGAAATTACCAAAATACCCTTTG-ATTATATCATAAGAAATTGACA-AATGG-CAAATGGA
** * * * * * * * * * * *
491687 CTA-ATATG-TGCTCATATCACAATTACGAAAATACTC-ATTCTTTTATAATTATTTGCTAAATT
752 CTATA-ATGCACCT-ATACCATAATTACGAAAACACCCTATTCTCTAACAATTATCTACGAAATA
* * ** * * * ** *
491749 ATCACTTGTGACATTATCAAAAT-ACAATTTCCATTATATGGTAAGAAATTGACATGTGACCAAA
815 ATCTCCTAAGAAATTACCAAAATAAC-CTTTCCATTATATAATAAGAAACTGACATGTG-CCAAA
* * *
491813 T-AAACTATTATTCTC
878 TGGAA-TATTATGCCC
* * * * * **
491828 TTATTA-CAAAATTATGAAAATAACCCTTCTCTTATAGTTA-TTACTAAATAATCCCTTATTAAA
1 TCA-TACCATAATTACGAAAAT-ACCCTTCTTTTATAATTATTTACTAAATAATCCC-TACAAAA
* * ***
491891 TTACCAAAATACCCTTTTTCATTATATGATAAGAAGTT-ATCATGTGGTAAAATGGACTATTATT
63 TTA-CAAAATA-CC-TTTCCATTATATGATAAGAAATTGAT-ATGTGACCAAATGGACTATTA-T
* * * * *
491955 CCCTAATATCATAATTACAAAAATACCTTTATCTTATAATTATTTACTAAA-AATCCTCTATAAA
123 GCCTTATA-CATAATTAC-AAAATA-C-TTCTCTTATAATTATTTAATAAATAATCCT-TATGAA
492019 ATTACCAAAAT
183 ATTACCAAAAT
492030 ACCTTTTCCG
Statistics
Matches: 2312, Mismatches: 484, Indels: 237
0.76 0.16 0.08
Matches are distributed among these distances:
900 2 0.00
901 57 0.02
902 104 0.04
903 412 0.18
904 676 0.29
905 441 0.19
906 418 0.18
907 109 0.05
908 81 0.04
909 12 0.01
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (892 bp):
TCATACCATAATTACGAAAATACCCTTCTTTTATAATTATTTACTAAATAATCCCTACAAAATTA
CAAAATACCTTTCCATTATATGATAAGAAATTGATATGTGACCAAATGGACTATTATGCCTTATA
CATAATTACAAAATACTTCTCTTATAATTATTTAATAAATAATCCTTATGAAATTACCAAAATGC
CAGTTTCATTATATGATAAGAAATTGACATGTAGCCAAATTGATTATTATGCCCTTATATCATAA
TTACGAAAATACCCATTTTCTTATAATTATTTACTAAATAATCACCTATGAAATTACCAAAATAC
CTTTCCATTATATGATAAGAAATTGACATGTGACCAAATTGACAATTATGCCTTATATCATAATT
ATGAAAATACCATCTTTTATAATTATTTACAAAATAATCCCTTATGAAATTACAAAAATACCTTT
TCAATTATATGATAAGAAATTAACATGTGGCAAACTAACAATTATGCTATCATACCATAAATATA
AAAATACCCCTTCTATTATAATTATTTACTAAACAATTATATATGAAATTACCAAAATACCATTT
ACATTATATGAAAAGAAATTAACATGTGACCAAACGAACTATTATGCCCTAATAACATAAATATC
AAAATACCCCTCATCTTATAATTATTTACAAAATAATCCTTTATGAAATTACCAAAATACCCTTT
GATTATATCATAAGAAATTGACAAATGGCAAATGGACTATAATGCACCTATACCATAATTACGAA
AACACCCTATTCTCTAACAATTATCTACGAAATAATCTCCTAAGAAATTACCAAAATAACCTTTC
CATTATATAATAAGAAACTGACATGTGCCAAATGGAATATTATGCCC
Found at i:490586 original size:15 final size:15
Alignment explanation
Indices: 490566--490597 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
490556 CCCTTCTCTT
490566 ATAATTATTTACTAA
1 ATAATTATTTACTAA
*
490581 ATAATTATTTATTAA
1 ATAATTATTTACTAA
490596 AT
1 AT
490598 TACCAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (15 bp):
ATAATTATTTACTAA
Found at i:491994 original size:259 final size:257
Alignment explanation
Indices: 487839--492048 Score: 2855
Period size: 259 Copynumber: 16.3 Consensus size: 257
487829 GTACACCATT
* * ** **
487839 ATTACGAAAATTACCTATT-TTATAATTATTTACTAAATAATCTAC-TACAAAATTATAAAAATA
1 ATTAC-AAAAATACCTTTTCTTATAATTATTTACTAAATAATC-ACTTATGAAATTACCAAAATA
* * * * * *
487902 CCCCTTCCATTATATGATAAGAAGTTAACATGTGACTAAATTGACAATTATGCCCTTATACCATA
64 CCCTTTCCATTATATGATAAGAAATTGACATGTGACCAAATGGACTATTATG-CCTTATACCATA
** * * *
487967 AAAATGAAAAT-ACCCTTTCTCTTATAATTGTTAACTGAATAATCGCCTT-TGAAATTACCAAAA
128 ATTATGAAAATAACCC-TTCTCTTATAATTATTTACTAAATAATC-CCTTATGAAATTACCAAAA
* * * * *
488030 TGCCATTTTCGTTATATGATAAGATATTGACATGTGACCAAATGGACTATTAT-ACC-C-T-T-A
191 TACCCTTTTCGTTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATATCA
488090 T-
256 TA
* * * * *
488091 ATTACAAAAGTACCACTTTT-TTATAATTATTTACTAAATAATCCCATATAAAATTACTAAAATA
1 ATTACAAAAATA-C-CTTTTCTTATAATTATTTACTAAATAATCACTTATGAAATTACCAAAATA
* * * ** * * * ** * * *
488155 -CCTTTTCAGTTATGTGATAATAAGCTAACTTATG-GA-TATATTAAC-ATTGTGGCATCATACC
64 CCCTTTCCA-TTATATGATAAGAAATTGAC--ATGTGACCAAATGGACTATTAT-GCCTTATACC
* * *** *
488216 ATAAATAT-AAAATACCCCTTCTCTTATAATTATTTACTAAATAATTGTTTATTAAATTACCAAA
125 ATAATTATGAAAATAACCCTTCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAA
* * * * * ** * * * *
488280 ATTCCTTTTTTGTTATATGAGAAGAAATTGACATGTGACCAAATATAATATTACGCTCT-ATTAC
190 ATACCCTTTTCGTTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCA-TAT
488344 CATA
254 CATA
* *** * * *
488348 ATTACCAAAATTACCCTCCACTTATAATTGTTTACTAAATAATC-TTCTATGAAATTACTAAAAT
1 ATTA-CAAAAATA-CCTTTTCTTATAATTATTTACTAAATAATCACT-TATGAAATTACCAAAAT
* * * * * *
488412 ATCCTTTGCATTAGATGATAAGAAATTAACGTGT-AGCCAAATGGACTATTATGCCCTCATACCA
63 ACCCTTTCCATTATATGATAAGAAATTGACATGTGA-CCAAATGGACTATTATG-CCTTATACCA
*** * * ** * * *
488476 TAATTAACTAAA-CACCCTTTCTCTAATAATTATTTAGGAAATAATCCCCTAGGAAATTACGAAA
126 TAATTATGAAAATAACCC-TTCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAA
* * * * * * *
488540 ATAACATTTTCATTATATGAT-AGAAAATTGATATGT-GCCAAAAGGAATATTATGCCCTTATA-
190 ATACCCTTTTCGTTATATGATAAG-AAATTGACATGTGGCCAAATGGACTATTATGCCCTCATAT
488602 C-TA
254 CATA
* * * * **
488605 GTATTTCGAAAATAATCTTCTT-TTATAATTATTGAC-AAATAATC-CATTACAAAATTA-CAGA
1 --ATTACAAAAAT-ACCTT-TTCTTATAATTATTTACTAAATAATCAC-TTATGAAATTACCA-A
* * * *
488666 AATAGCCCTTTCCATTATATAATAAGAAGTT-ATCATGTGACTAAATTGACTATTATG-CTCT-T
60 AATA-CCCTTTCCATTATATGATAAGAAATTGA-CATGTGACCAAATGGACTATTATGCCT-TAT
* ** * * *
488728 ACCATAAATACAAAAAT-ACCCATTCTCTTATAATTGTTAACTAAATAATCGCC-TGTGAAATTA
122 ACCATAATTATGAAAATAACCC-TTCTCTTATAATTATTTACTAAATAATC-CCTTATGAAATTA
*** * * * * *
488791 CCAAAACGTCATTTCCATTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATACCCTC
185 CCAAAATACCCTTTTCGTTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTC
488856 ATATCATA
250 ATATCATA
* * * ** * * *
488864 ATTACGAAAATATCCATTTGCTTATAATTATGTAAAAAATAATCTCCTATGAAATTATCAAAATA
1 ATTACAAAAATA-CC-TTTTCTTATAATTATTTACTAAATAATCACTTATGAAATTACCAAAATA
*** * * * ** * * * * *
488929 TTGTTTCTATTATATGATAAGAAGTTAACATACGGCTAAATTGACTATTGTGCCATCATACCATA
64 CCCTTTCCATTATATGATAAGAAATTGACATGTGACCAAATGGACTATTATGCC-TTATACCATA
* * * * * * *
488994 AATATGAAAATACCCCTTCTTTTTATAATTATTTGCTAAATAATCACATATGAAATTACCAACAT
128 ATTATGAAAATAACCCTTC-TCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAAT
* * * * *
489059 ACCATTGTCGTTATATGATAAGAAATTGAAATGTGGCCAAATGAACTATTATGCCCTCATACCAT
192 ACCCTTTTCGTTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATATCAT
489124 A
257 A
* * * ** **
489125 ATTACAAAAATACCCCTTCTT-TTACAATTAATTACTAAA-AATCTCCCACAAAATTACCAAAAT
1 ATTACAAAAATA--CCTT-TTCTTATAATTATTTACTAAATAATCACTTATGAAATTACCAAAAT
* * *
489188 AACCTTTCCAATATATGATAAGAAATTGACATGTGACCAAATGAACTATTATGCCATTATACCAT
63 ACCCTTTCCATTATATGATAAGAAATTGACATGTGACCAAATGGACTATTATGCC-TTATACCAT
* * *
489253 AATTATCAAAAT-A---TTCCTCTTATAATTATTTACTAAATAATACCTTATCAAATTACCAAAA
127 AATTATGAAAATAACCCTT-CTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAA
* * * * * * * * * * * *
489314 TACCATTTTTGTTTTATGATAAGAAGTTAACATGTAGCCAAATTGACTATTATGTCTTTAGACCA
191 TACCCTTTTCGTTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATATCA
489379 TA
256 TA
* * * * *
489381 ATTACAAAAATACCTTTTCTTTTATAGTTATTTACT-AA-AATCACCTATAAAATTACTAAAATG
1 ATTACAAAAATACCTTTTC--TTATAATTATTTACTAAATAATCACTTATGAAATTACCAAAATA
* * *
489444 CCCTTTCCATTATATGATAAGAAATTGACATGTGACAAAATGGACAATTATGCCTCTATATCATA
64 CCCTTTCCATTATATGATAAGAAATTGACATGTGACCAAATGGACTATTATGCCT-TATACCATA
* * * *
489509 ATTATGAAAAT-ACCTCTTCTCTTAAAAATATTTACTAGATAATCACC-TATGAAATTACAAAAA
128 ATTATGAAAATAACC-CTTCTCTTATAATTATTTACTAAATAATC-CCTTATGAAATTACCAAAA
** * * * * * * *
489572 T-GGCTTTTCTGTTTTATGATAAGAAATTGAGATGTGGACAACTAGACAATTATGCCTTCATATC
191 TACCCTTTTC-GTTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATATC
489636 ATA
255 ATA
* * * * * ** *
489639 ATTATAAAAATACCCCTTTTATTCTAATTATTTGCTAAACAATTTCATATGAAATTACCAAAATA
1 ATTACAAAAATA--CCTTTTCTTATAATTATTTACTAAATAATCACTTATGAAATTACCAAAATA
** * * * * * * * ** *
489704 CTATTTACATTATATGAAAATAAGTTAACTTGTGACTAAATTAACTATTATGGCCTCA-ATCCAT
64 CCCTTTCCATTATATGATAAGAAATTGACATGTGACCAAATGGACTATTAT-GCCTTATA-CCAT
* * * * ** * *
489768 AAATATGAAAATACCCCTTTTCTTATAATTATTTACAAAATAAT-TTTTATTAATTTACCAAAAT
127 AATTATGAAAATAACCCTTCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAAT
* * ** * * * *
489832 GCCCTGTTCGTTATATGATAAGAAATTGACAAATGGCCAAATGGACTATAATGCACTTATACCAT
192 ACCCTTTTCGTTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATATCAT
489897 A
257 A
** * * * * * * * * * *
489898 ATTATGAAAATACCCATTCTCTTACAATTATCTACTAATTAATCCCTCAAGGAATTTCCAAAATG
1 ATTACAAAAATA-CC-TTTTCTTATAATTATTTACTAAATAATCACTTATGAAATTACCAAAATA
* * * * * * * **
489963 TCCTTTCCATTATATAATAAGAAACTGACAT-TTAGCTAAATGGACTATTTTGCCCTTTTGGCAT
64 CCCTTTCCATTATATGATAAGAAATTGACATGTGA-CCAAATGGACTATTATG-CCTTATACCAT
*
490027 AATTATGAAAAT-ACCCATTCTCTTATAATTATTTACTAAATAATCACC-TATAAAATTA-CAAA
127 AATTATGAAAATAACCC-TTCTCTTATAATTATTTACTAAATAATC-CCTTATGAAATTACCAAA
* * * * * * *
490089 ATACCATTTCCATTATATAATAAGAAATTGATATGCT-ACCAAATGGTCTATTATG-CCTGCATA
190 ATACCCTTTTCGTTATATGATAAGAAATTGACATG-TGGCCAAATGGACTATTATGCCCT-CATA
*
490152 TTATA
253 TCATA
* * * *
490157 ATTACGAAAATA-CTTCTCGGTTATAACTATTTATTAAATAATC-CTTATGAAATTACCAAAAT-
1 ATTACAAAAATACCTTTTC--TTATAATTATTTACTAAATAATCACTTATGAAATTACCAAAATA
* * ** * * * *
490219 GCCTATTACATTATAAAATAAGAAATTGACATGTAACCAAATGGATTGTTATGCCCTTATATCAT
64 CCCT-TTCCATTATATGATAAGAAATTGACATGTGACCAAATGGACTATTATG-CCTTATACCAT
* * *
490284 AATTACGAAAGT-ACCCATTTTCTTATAATTATTTACTAAATAATTCCC-TATGAAATTACCAAA
127 AATTATGAAAATAACCC-TTCTCTTATAATTATTTACTAAATAA-TCCCTTATGAAATTACCAAA
* * * * * *
490347 GTACGCTTTTCGTTATATGATAAGAAATTGACATGTGGCCAAATTGACAATTATACCCTTATATC
190 ATACCCTTTTCGTTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATATC
490412 ATA
255 ATA
* * * * * * *
490415 GTTACGAAAATACCATCTT-TTATAATTATTTACAAAATAATCCCTTGTGAATTTACCAAAATAC
1 ATTACAAAAATACC-TTTTCTTATAATTATTTACTAAATAATCACTTATGAAATTACCAAAATAC
* * * * * * * ** *
490479 CTTTTCAATTATGTGATAAGAAGTTAACATGTGGCTAAATTAACTATTGTG-CTATCATACCATA
65 CCTTTCCATTATATGATAAGAAATTGACATGTGACCAAATGGACTATTATGCCT-T-ATACCATA
* * *** * *
490543 AATATGAAAATACCCCTTCTCTTATAATTATTTACTAAATAATTATTTATTAAATTACCAAAATT
128 ATTATGAAAATAACCCTTCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATA
* * * * * * *
490608 CCCTTTTTGTTATATGATCAGAAATTGACATGTGACCATACGGATTATTATGCCCT-ATTAACAT
193 CCCTTTTCGTTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCA-TATCAT
490672 A
257 A
* * ** * * *
490673 ATTATCAAAATTGCCCTCATCTTTTAATTATTTACTAAATAATC-CTTTATGAAATTACTAAACT
1 ATTA-CAAAAAT-ACCTTTTCTTATAATTATTTACTAAATAATCAC-TTATGAAATTACCAAAAT
** * * *** *
490737 ACCCTTTGTATTATATCATAAGAAATTGACATTTG-GTGAATGGACTATTATGCCCCTATACCAT
63 ACCCTTTCCATTATATGATAAGAAATTGACATGTGACCAAATGGACTATTATG-CCTTATACCAT
* ** * * * **
490801 AATTACGTTAA-CACCCTTTTCTCTAATAATTATCTAGGAAATAATCTCCTTA-GAAATTACCAA
127 AATTATGAAAATAACCC--TTCTCTTATAATTATTTACTAAATAATC-CCTTATGAAATTACCAA
* * * * * *
490864 AATAACCTTTCCATTATATGGTAAGAAATTGACATGT-GCCAAATGGAATATTATGCCCTCATAC
189 AATACCCTTTTCGTTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATAT
*
490928 CATT
254 CATA
* ** *
490932 ATTAC-GAAATAACCTTCTT-TTATAATTATTTACTAAATAATCCAC-TACAAAATTACAAAAAT
1 ATTACAAAAAT-ACCTT-TTCTTATAATTATTTACTAAATAAT-CACTTATGAAATTACCAAAA-
* * * * * * *
490994 TTCCCTTT-TATTATATGATAAGAAGTT-ATCATGTGGCTAAATTGACAATTATGCCTTTATA-C
62 TACCCTTTCCATTATATGATAAGAAATTGA-CATGTGACCAAATGGACTATTATGCC-TTATACC
* * * * * * * * **
491056 ATAAATATAAAAATACCCCTTCTCTTATAATTGTTAAATAAATAATCGCATGCGAAATTACCAAA
125 ATAATTATGAAAATAACCCTTCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAA
* ** * * * *
491121 ATGCCAGTTTCATTATATGATAAGAAATTGACATGTGGCCAAATTGATTATTATACCCTCATATC
190 ATACCCTTTTCGTTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATATC
491186 ATA
255 ATA
* * * * * *
491189 ATTACGAAAATACCCTATTTTTTATAATTATGTACCAAATAATCTCCTATGAAATTACCAAAATA
1 ATTACAAAAATA-CCT-TTTCTTATAATTATTTACTAAATAATCACTTATGAAATTACCAAAATA
* * *
491254 CCATTTCCATTATATGATAA-AAAGTTAACATGTGACCAAATTGACTATTATGCCTTCATACCAT
64 CCCTTTCCATTATATGATAAGAAA-TTGACATGTGACCAAATGGACTATTATGCCTT-ATACCAT
* * ** * * **
491318 AAATATGAAAATATCATTTCTCTTATAATTATTTACAAAATAATCTCC-CAAAAAATTACCAAAA
127 AATTATGAAAATAACCCTTCTCTTATAATTATTTACTAAATAATC-CCTTATGAAATTACCAAAA
* * * * * * * * * *
491382 TGCCC-TTCCTATTATACGATCAGAAATCGATATATGACCAAATGGACTATTATGCCCTCATACC
191 TACCCTTTTC-GTTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATATC
491446 ATA
255 ATA
* * * * * * * * *
491449 ACTACAAAAACACCTATTCTTTGATAATTATTTATTAAATAATCCCTAAAGTAATTATCAAAATG
1 ATTACAAAAATACCTTTTC-TT-ATAATTATTTACTAAATAATCACTTATGAAATTACCAAAAT-
* * * * * * * * *
491514 TCCATTT-TATTATATAATAAGAAATTAACATGTGGCCAAATAGATTATTATGCCCTCATACCAT
63 ACCCTTTCCATTATATGATAAGAAATTGACATGTGACCAAATGGACTATTATG-CCTTATACCAT
* * * * * *
491578 AATTATGATAAT-ATCCTTTTCTTATAATTATTTACTAAATAATCCCTTATGAATTTACTAAAAC
127 AATTATGAAAATAACCCTTCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAAT
* * * * * * * * * **
491642 ATCATTTGCTTTATATGAAAAGAAATTTACA-GAAGGCCAAATTGACTAATATGTGCTCATATCA
192 ACCCTTTTCGTTATATGATAAGAAATTGACATG-TGGCCAAATGGACTATTATGCCCTCATATCA
*
491706 CA
256 TA
* * * * * *
491708 ATTACGAAAATACTCATTCTT-TTATAATTATTTGCTAAATTATCACTTGTGACATTATCAAAAT
1 ATTACAAAAATAC-C-TT-TTCTTATAATTATTTACTAAATAATCACTTATGAAATTACCAAAAT
** * ** *
491772 ACAATTTCCATTATATGGTAAGAAATTGACATGTGACCAAATAAACTATTATTCTCTTATTA-CA
63 ACCCTTTCCATTATATGATAAGAAATTGACATGTGACCAAATGGACTATTATGC-CTTA-TACCA
* * *
491836 AAATTATGAAAATAACCCTTCTCTTATAGTTA-TTACTAAATAATCCCTTATTAAATTACCAAAA
126 TAATTATGAAAATAACCCTTCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAA
* * ** * *
491900 TACCCTTTTTCATTATATGATAAGAAGTT-ATCATGTGGTAAAATGGACTATTATTCCCTAATAT
191 TACCC-TTTTCGTTATATGATAAGAAATTGA-CATGTGGCCAAATGGACTATTATGCCCTCATAT
491964 CATA
254 CATA
*
491968 ATTACAAAAATACCTTTATCTTATAATTATTTACTAAA-AATC-CTCTATAAAATTACCAAAATA
1 ATTACAAAAATACCTTT-TCTTATAATTATTTACTAAATAATCACT-TATGAAATTACCAAAATA
* *
492031 CCTTTTCCGTTA-ATGATA
64 CCCTTTCCATTATATGATA
492049 TACATTAAAA
Statistics
Matches: 3087, Mismatches: 712, Indels: 313
0.75 0.17 0.08
Matches are distributed among these distances:
250 2 0.00
251 92 0.03
252 35 0.01
253 69 0.02
254 8 0.00
255 95 0.03
256 281 0.09
257 321 0.10
258 639 0.21
259 701 0.23
260 694 0.22
261 145 0.05
262 5 0.00
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (257 bp):
ATTACAAAAATACCTTTTCTTATAATTATTTACTAAATAATCACTTATGAAATTACCAAAATACC
CTTTCCATTATATGATAAGAAATTGACATGTGACCAAATGGACTATTATGCCTTATACCATAATT
ATGAAAATAACCCTTCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCC
TTTTCGTTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATATCATA
Found at i:492343 original size:130 final size:128
Alignment explanation
Indices: 492169--493226 Score: 710
Period size: 130 Copynumber: 8.2 Consensus size: 128
492159 ATAACTATTT
* * ** * * *
492169 TCTTATAATTATTTACCATATAAT-CCCTCACAAAATTACAAAAATACACTTTCCATTGTAAGAT
1 TCTTATAATTATTTACTAAATAATCCCCT-ATGAAATTACCAAAATACACTTTCCATTATATGAT
* * * *
492233 AAGAAATTTACATATTGCCAAAATGACTTTTATGCCCTCATATCATAATTATGAAAAAACCCTTT
65 AAGAAATTGACAT-GTGCCAAAATGACTATTATGCCCTCATATCATAATTA-CAAAAAACCCTTT
492298 C
128 C
* * * * * *
492299 TTTTATAATTATTTACTAAATAGTCCCCTATGAAAATACCAAAAT-C-CCTTCCATTATATAACA
1 TCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACACTTTCCATTATATGATA
* * * * * * * * * * *
492362 AGAACTTGACATGTGGCTAAAGGTACTATTATGCCTTCACACCATAATTATGAAAATATCCATTC
66 AGAAATTGACATGTGCCAAAATG-ACTATTATGCCCTCATATCATAATTA-CAAAAAACCCTTTC
* * * * * * * * *
492427 ACTTATAGTTATTTACTAAATAAT-CACTCAAGAAATTACTAAAATGCATTTTCTATTATGTGAT
1 TCTTATAATTATTTACTAAATAATCCCCT-ATGAAATTACCAAAATACACTTTCCATTATATGAT
* * * * ** *
492491 AAGAAATTGACATGTGGCTAAATGAACTACTATGCCCTTATGCCATAATTACAAAAATACCCATT
65 AAGAAATTGACATGTGCCAAAATG-ACTATTATGCCCTCATATCATAATTACAAAAA-ACCCTTT
492556 C
128 C
* ** *
492557 TCTTATAATTATTTACTAAATAATCGCCTAAAAAATTACCAAAATGC-CATTTCCATTATATGAT
1 TCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACAC-TTTCCATTATATGAT
* * * **
492621 AAAAAATTTACATGTGACCAAATTGACTAAATT-T-CCCTCATATTGTAATTACAAAAAACCCCT
65 AAGAAATTGACATGTG-CCAAAATGACT--ATTATGCCCTCATATCATAATTACAAAAAA-CCCT
492684 TT-
126 TTC
* * * * * *
492686 GCTTATAATTATTTACTAAATAATCACTTATGAAATTACCAAAATACCCTTTCTATTACATGATA
1 TCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACACTTTCCATTATATGATA
* * * ** * *
492751 AGAAATTGACATGTGGCTAAATGGACAACAATTCCCTCAT-TCCATAATTACAAAAGTACCCTTT
66 AGAAATTGACATGTGCCAAAAT-GACTATTATGCCCTCATAT-CATAATTACAAAA-AACCCTTT
492815 C
128 C
* * * * * *
492816 TCTTATAATTATTTATTAAAAAAATTCCTTATGAAATTACCAAAATACA-TTATCAATTATA-CA
1 TCTTATAATTATTTACT-AAATAATCCCCTATGAAATTACCAAAATACACTT-TCCATTATATGA
* * * * * * * *
492879 GGAAGAAGTTGACATGTGTCCAAACA-GACTATTATACCCTTATATGATAATTATGAAAGAACAC
64 -TAAGAAATTGACATGTG-CCAAA-ATGACTATTATGCCCTCATATCATAATTA-CAAAAAACCC
* *
492943 ATAC
125 TTTC
* * * * * **
492947 CCTTATAATTATTTATTAAATAGTCCCTTATGATATTACCAAAATATC-CAGTCCATTATATGAT
1 TCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATA-CACTTTCCATTATATGAT
* * * * * *
493011 AAGAAGTTAACATGTAGCCAAATTCACTATTATGCCTTCATA-CGATAATTACAAAAATACCCCT
65 AAGAAATTGACATGT-GCCAAAATGACTATTATGCCCTCATATC-ATAATTACAAAAA-ACCCTT
493075 TC
127 TC
** ** * * * * *
493077 TCTTATAATTATTTACTAAATAATTGCCTATGAAATTTTCAAAATGCATTTTCCCTCATGTGATA
1 TCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACACTTTCCATTATATGATA
* * * * * ***
493142 AAAAATTGACACG-GCC-AAATAGACTATTATGCCCTAATA-CAATAATTATGAAAATATTGTTT
66 AGAAATTGACATGTGCCAAAAT-GACTATTATGCCCTCATATC-ATAATTA-CAAAAAACCCTTT
493204 C
128 C
* *
493205 TTTTATAATTATTTACAAAATA
1 TCTTATAATTATTTACTAAATA
493227 GTCCTCTAAC
Statistics
Matches: 721, Mismatches: 171, Indels: 74
0.75 0.18 0.08
Matches are distributed among these distances:
127 14 0.02
128 145 0.20
129 111 0.15
130 337 0.47
131 104 0.14
132 9 0.01
133 1 0.00
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.35
Consensus pattern (128 bp):
TCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACACTTTCCATTATATGATA
AGAAATTGACATGTGCCAAAATGACTATTATGCCCTCATATCATAATTACAAAAAACCCTTTC
Found at i:493451 original size:128 final size:131
Alignment explanation
Indices: 493239--493496 Score: 306
Period size: 129 Copynumber: 2.0 Consensus size: 131
493229 CCTCTAACAA
* * * * * *
493239 ATTACATGGTAAGAAATTGACATGTGGCCAAATGGACTATCATTCCTTTATTCTAAAATTACAAA
1 ATTACATGATAAGAAATTCACATGTGGCCAAATGGACTATCATGCCCTCATTCCAAAATTACAAA
* ** * * * * *
493304 AATATCTTTTCTCTTATAATTATTT-CTAAATAATCCATTATTAAATTATCAAAATA-CCTTTTC
66 AATACCCCTTCTCTTATAATTATTTACAAAAAAATCCACTATGAAATTAGCAAAATATCCTTTTC
493367 C
131 C
* * * * *
493368 ATTATATGATAAGAAATTCTCATGTTGCCAAATGGACTATTATGCCCTCA-TCCATAATTACAAA
1 ATTACATGATAAGAAATTCACATGTGGCCAAATGGACTATCATGCCCTCATTCCAAAATTACAAA
* *
493432 ATTACCCCTTCTCTTATAATTATTTACAAAAAAATCCCCTATGAAATTAGCAAAATATCCTTTTC
66 AATACCCCTTCTCTTATAATTATTTACAAAAAAATCCACTATGAAATTAGCAAAATATCCTTTTC
493497 GTTAATGATA
Statistics
Matches: 106, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
128 33 0.31
129 66 0.62
130 7 0.07
ACGTcount: A:0.37, C:0.19, G:0.07, T:0.37
Consensus pattern (131 bp):
ATTACATGATAAGAAATTCACATGTGGCCAAATGGACTATCATGCCCTCATTCCAAAATTACAAA
AATACCCCTTCTCTTATAATTATTTACAAAAAAATCCACTATGAAATTAGCAAAATATCCTTTTC
C
Found at i:493961 original size:114 final size:114
Alignment explanation
Indices: 493758--493966 Score: 294
Period size: 114 Copynumber: 1.8 Consensus size: 114
493748 ACCTCTCATC
* * * *
493758 TTATAATTATTTACTAAATAATCCCTTATGAAATTATCAAGATAAGCTTTCCATTATTTGATAAG
1 TTATAATTATTTACTAAATAATCCCTTAAGAAATTATCAAAATAACCTTTCCATTATATGATAAG
*
493823 GAATTGACATGACGCCAAAAGGATTATTATCATAATTATGAAAACTATT
66 AAATTGACATGACGCCAAAAGGATTATTATCATAATTATGAAAACTATT
* ** *
493872 TTATAATTATTTACTAAATAAT-CCTATAAGAAATTTTCAAAATGCCCTTTCCTTTATATGATAA
1 TTATAATTATTTACTAAATAATCCCT-TAAGAAATTATCAAAATAACCTTTCCATTATATGATAA
** *
493936 GAAATTGACATGTGGCCAAATGGATTATTAT
65 GAAATTGACATGACGCCAAAAGGATTATTAT
493967 GCCCTCAATC
Statistics
Matches: 82, Mismatches: 12, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
113 3 0.04
114 79 0.96
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (114 bp):
TTATAATTATTTACTAAATAATCCCTTAAGAAATTATCAAAATAACCTTTCCATTATATGATAAG
AAATTGACATGACGCCAAAAGGATTATTATCATAATTATGAAAACTATT
Found at i:494105 original size:52 final size:53
Alignment explanation
Indices: 493989--494105 Score: 123
Period size: 52 Copynumber: 2.2 Consensus size: 53
493979 TAATTATGAC
* ** * *
493989 AATACCCCTTCTTTTATAATTATTTACCAAATAATCCCTTATGAAATTCTCAA
1 AATACCCATTCTCCTATAATTAATTACCAAATAATCACTTATGAAATTCTCAA
* * *
494042 AGTGA-CTATTCTCCTATAATTAATTACTAAA-AATCACTTATGAAATTAC-CAA
1 AAT-ACCCATTCTCCTATAATTAATTACCAAATAATCACTTATGAAATT-CTCAA
494094 AATACCCATTCT
1 AATACCCATTCT
494106 ATTATATGAG
Statistics
Matches: 51, Mismatches: 10, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
51 1 0.02
52 26 0.51
53 23 0.45
54 1 0.02
ACGTcount: A:0.38, C:0.21, G:0.03, T:0.37
Consensus pattern (53 bp):
AATACCCATTCTCCTATAATTAATTACCAAATAATCACTTATGAAATTCTCAA
Found at i:494185 original size:182 final size:183
Alignment explanation
Indices: 493873--494212 Score: 447
Period size: 182 Copynumber: 1.9 Consensus size: 183
493863 AAAACTATTT
* ** * * *
493873 TATAATTATTTACTAAATAATCCTATAAGAAATTTTCAAAATGCCCTTTCCTTTATATGATAAGA
1 TATAATTAATTACTAAATAATCCTATAAGAAATTACCAAAATACCCATTCCTTTATATGAGAAGA
* * ** *
493938 AATTGACATGTGGCCAAATGGATTATTATGCCCTCAATCCATAATTATGACAATACCCCTTCTTT
66 AATTGACATATGGCCAAATGGACTATTATGCCCTCAATCCATAATTACAAAAATACCCCTTCTTT
494003 TATAATTATTTACCAAATAATCCCTTATGAAATTCTCAAAGTGACTATTCTCC
131 TATAATTATTTACCAAATAATCCCTTATGAAATTCTCAAAGTGACTATTCTCC
*
494056 TATAATTAATTACTAAA-AATCACT-TATGAAATTACCAAAATACCCATT-CTATTATATGAGAA
1 TATAATTAATTACTAAATAATC-CTATAAGAAATTACCAAAATACCCATTCCT-TTATATGAGAA
* * * * *
494118 GAAGA-TGGCATATGGCTAAATGGACTATTATGTCCTCAGA-CCATAATTACAAAAATACGCTTT
64 GAA-ATTGACATATGGCCAAATGGACTATTATGCCCTCA-ATCCATAATTACAAAAATACCCCTT
*
494181 CTTTTATAATTATTTACTAAATAATCCCTTAT
127 CTTTTATAATTATTTACCAAATAATCCCTTAT
494213 AATATTATCA
Statistics
Matches: 135, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
181 2 0.01
182 113 0.84
183 20 0.15
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.36
Consensus pattern (183 bp):
TATAATTAATTACTAAATAATCCTATAAGAAATTACCAAAATACCCATTCCTTTATATGAGAAGA
AATTGACATATGGCCAAATGGACTATTATGCCCTCAATCCATAATTACAAAAATACCCCTTCTTT
TATAATTATTTACCAAATAATCCCTTATGAAATTCTCAAAGTGACTATTCTCC
Found at i:494626 original size:130 final size:129
Alignment explanation
Indices: 494047--494889 Score: 503
Period size: 130 Copynumber: 6.6 Consensus size: 129
494037 CTCAAAGTGA
* * * * * * *
494047 CTATTCTCCTATAATTAATTACTAAA-AATCACTTATGAAATTACCAAAATACCCATTCTATTAT
1 CTATTCTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACTCTTTCCATTAT
* * * * * * * *
494111 ATGAGAAGAAGA-TG-GCATATGGCTAAATGGACTATTATGTCCTCAGACCATAATTACAAAAAT
66 ATGATAAGAA-ATTGTACATGTGCCAAAAT-GACTATTAT-CCCTCATATCATAATTACAAAAAT
494174 AC
128 AC
* * * * **
494176 GCT-TTCTTTTATAATTATTTACTAAATAATCCCTTAT-AATATTATCAAAATA-TCCATTGTAT
1 -CTATTCTCTTATAATTATTTACTAAATAATCCCCTATGAA-ATTACCAAAATACT-CTTTCCAT
* * * * * **
494238 TATATGAT-AG---TT-AACATGTAGCCAAATTGACTACTATGGCTTCATA-CTATAATTATGAA
63 TATATGATAAGAAATTGTACATGT-GCCAAAATGACTATTAT-CCCTCATATC-ATAATTACAAA
494297 AATACC
125 AATA-C
* * ** * * * *
494303 CT-TACTCTTATAATTATTTAGTAAATAATCATCTATGAAATTTCCCAAATGCT-TGCTCC-TTC
1 CTATTCTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACTCT-TTCCATT-
* * * * **
494365 ATATGATAAAAAATTG-ACTTGTGGCCCAAATGGACTATTATGCCCTAATA-CAATAATTATGAA
64 ATATGATAAGAAATTGTACATGT-GCCAAAAT-GACTATTAT-CCCTCATATC-ATAATTACAAA
494428 AATA-
125 AATAC
* * * * * * *
494432 CTCCTTCTTTTATAATTATTTGCTAAATAATCCTCTA-AAATATTACCAATATGC-CATTTCCAT
1 CT-ATTCTCTTATAATTATTTACTAAATAATCCCCTATGAA-ATTACCAAAATACTC-TTTCCAT
* *
494495 TATATGATAAGAAATT-TACATAGTGCCAAAATGA-TTTTCATACCCTCATATCATAACTACAAA
63 TATATGATAAGAAATTGTACAT-GTGCCAAAATGACTATT-AT-CCCTCATATCATAATTACAAA
494558 AATAC
125 AATAC
* * * *
494563 CTATTCTCTTATAATTATTTACTAAATAATCCCCTATGACATAACCAAAATACTCTTTTCATTAC
1 CTATTCTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACTCTTTCCATTAT
* * * ** *
494628 ATGGTAAGAAATTGATAAATG-GCC-AAATGGACTATTAT-TCTTTTATTCCAAAATTACAAAAG
66 ATGATAAGAAATTG-TACATGTGCCAAAAT-GACTATTATCCCTCATA-T-CATAATTACAAAA-
494690 CA-AC
126 -ATAC
* * * * *
494694 C--TTCTTTTATAACTA-TTACTAAATAATCCCTTATTAAATTACCAAAATACCCTTTCCATTAT
1 CTATTCTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACTCTTTCCATTAT
* * * *
494756 ATGATAAGAAGTTGT-CATGTGGCCAAATTGACTATTATGCCTGCATACCATAATTAC-AAAATA
66 ATGATAAGAAATTGTACATGT-GCCAAAATGACTATTATCCCT-CATATCATAATTACAAAAATA
494819 -
129 C
***
494819 CTCATTCTCTTATAATTATTTACTAAATAATCTTTTATGAAATTACCAAAATACAT-TTTCCATT
1 CT-ATTCTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATAC-TCTTTCCATT
494883 A-ATGATA
64 ATATGATA
494890 TACATTAATT
Statistics
Matches: 558, Mismatches: 105, Indels: 102
0.73 0.14 0.13
Matches are distributed among these distances:
125 5 0.01
126 82 0.15
127 14 0.03
128 94 0.17
129 92 0.16
130 154 0.28
131 107 0.19
132 10 0.02
ACGTcount: A:0.38, C:0.18, G:0.08, T:0.36
Consensus pattern (129 bp):
CTATTCTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACTCTTTCCATTAT
ATGATAAGAAATTGTACATGTGCCAAAATGACTATTATCCCTCATATCATAATTACAAAAATAC
Found at i:494872 original size:257 final size:250
Alignment explanation
Indices: 494049--494872 Score: 702
Period size: 257 Copynumber: 3.2 Consensus size: 250
494039 CAAAGTGACT
* * * *
494049 ATTCTCCTATAATTAATTACTAAA-AATCACTTATGAAATTACCAAAATAC-CCATTCTATTATA
1 ATTCTCTTATAATTATTTACTAAATAATCACCTATGAAATTACCAAAATACTCTATTC-ATTATA
* * * * *
494112 TGAG-AAGAAGATGGCATATGGCTAAATGGACTATTATGTCCTCAGA-CCATAATTACAAAAATA
65 TG-GTAAGAA-ATTG-ATATGGCCAAATGGACTATTAT-TCCTTA-ATCCAAAATTACAAAAACA
* * * **
494175 CGCTTTCTTTTATAATTATTTACTAAATAATCCCTTATAATATTATCAAAATATCCATTGTATTA
125 C-C-TTCTTTTATAATTATTTACTAAATAATCCCTTATAATATTACCAAAATACCCTTTCCATTA
* * * * *
494240 TATGAT----AGTTAACATGTAGCCAAATTGACTACTATGGCTTCATACTATAATTATGAAAATA
188 TATGATAAGAAGTT-TCATGT-GCCAAATTGACTATTAT-GCCTCATACCATAATTA-CAAAATA
494301 CC
249 CC
* * * * * * ** *
494303 CTTACTCTTATAATTATTTAGTAAATAATCATCTATGAAATTTCCCAAATGCT-TGCTCCTTCAT
1 ATT-CTCTTATAATTATTTACTAAATAATCACCTATGAAATTACCAAAATACTCTATTCATT-AT
* * * * * * *
494367 ATGATAAAAAATTGACTTGTGGCCCAAATGGACTATTATGCCCTAATACAATAATTATGAAAATA
64 ATGGTAAGAAATTGA--TATGG-CCAAATGGACTATTATTCCTTAATCCAA-AATTA-CAAAA-A
* * * * * *
494432 CTCCTTCTTTTATAATTATTTGCTAAATAAT-CCTCTAAAATATTACCAATATGCCATTTCCATT
123 CACCTTCTTTTATAATTATTTACTAAATAATCCCT-TATAATATTACCAAAATACCCTTTCCATT
* * * * * *
494496 ATATGATAAGAAATTTACATAGTGCCAAAATGA-TTTTCATACCCTCATATCATAACTACAAAAA
187 ATATGATAAGAAGTTT-CAT-GTGCCAAATTGACTATT-AT-GCCTCATACCATAATTAC-AAAA
494560 TACC
247 TACC
* * * * *
494564 TATTCTCTTATAATTATTTACTAAATAATCCCCTATGACATAACCAAAATACTCTTTTCATTACA
1 -ATTCTCTTATAATTATTTACTAAATAATCACCTATGAAATTACCAAAATACTCTATTCATTATA
* * *
494629 TGGTAAGAAATTGATAAATGGCCAAATGGACTATTATTCTTTTATTCCAAAATTACAAAAGCAAC
65 TGGTAAGAAATTGAT--ATGGCCAAATGGACTATTATTC-CTTAATCCAAAATTACAAAAAC-AC
*
494694 CTTCTTTTATAACTA-TTACTAAATAATCCCTTATTAA-ATTACCAAAATACCCTTTCCATTATA
126 CTTCTTTTATAATTATTTACTAAATAATCCCTTA-TAATATTACCAAAATACCCTTTCCATTATA
494757 TGATAAGAAGTTGTCATGTGGCCAAATTGACTATTATGCCTGCATACCATAATTACAAAATACTC
190 TGATAAGAAGTT-TCATGT-GCCAAATTGACTATTATGCCT-CATACCATAATTACAAAATAC-C
***
494822 ATTCTCTTATAATTATTTACTAAATAATCTTTTATGAAATTACCAAAATAC
1 ATTCTCTTATAATTATTTACTAAATAATCACCTATGAAATTACCAAAATAC
494873 ATTTTCCATT
Statistics
Matches: 447, Mismatches: 89, Indels: 65
0.74 0.15 0.11
Matches are distributed among these distances:
254 3 0.01
255 24 0.05
256 44 0.10
257 131 0.29
258 80 0.18
259 31 0.07
260 24 0.05
261 101 0.23
262 9 0.02
ACGTcount: A:0.38, C:0.18, G:0.08, T:0.36
Consensus pattern (250 bp):
ATTCTCTTATAATTATTTACTAAATAATCACCTATGAAATTACCAAAATACTCTATTCATTATAT
GGTAAGAAATTGATATGGCCAAATGGACTATTATTCCTTAATCCAAAATTACAAAAACACCTTCT
TTTATAATTATTTACTAAATAATCCCTTATAATATTACCAAAATACCCTTTCCATTATATGATAA
GAAGTTTCATGTGCCAAATTGACTATTATGCCTCATACCATAATTACAAAATACC
Found at i:495150 original size:131 final size:130
Alignment explanation
Indices: 494895--495281 Score: 394
Period size: 131 Copynumber: 3.0 Consensus size: 130
494885 TGATATACAT
* * *
494895 TAATTATGAAAATACCCTTTT-TCTTATCATTATTTACTATATAATC-CCTTAAAAAATTACAAA
1 TAATTATGAAAATACCCTTTTCTCTTATAATTA-TTACTAAATAATCTCC-TAAAAAATTACCAA
* * * * * * *
494958 AATACCCTTTTCATTATATGATAAAAAATT-TACATGTTGTCAAA-AGGACTTTTATACCTTCAT
64 AATACCATTTTCATTATATGATAAGAAATTAT-CATATGGCCAAATA-GACTATTATTCCTTCAT
*
495021 ACCA
127 AACA
* * *
495025 TAATTATGAAAATACCCTTTTCTCTCATAATTATATACTAAATAATCTCCTAAGAAATTGCCAAA
1 TAATTATGAAAATACCCTTTTCTCTTATAATTAT-TACTAAATAATCTCCTAAAAAATTACCAAA
* * *
495090 ATACCATTTTCATTGTTTGATAAGAAATTATCATATGGCCAAATAGACTATTATTTCTTCATAAC
65 ATACCATTTTCATTATATGATAAGAAATTATCATATGGCCAAATAGACTATTATTCCTTCATAAC
495155 A
130 A
* * * **
495156 TAGTTATGAAAATA--CTTCTTCTTTTATAATTATTACTAAATAATCTCTTATTAAATTACCAAA
1 TAATTATGAAAATACCCTT-TTCTCTTATAATTATTACTAAATAATCTCCTAAAAAATTACCAAA
** * * * *
495219 ATA-TGTTTTCCATTATATGATAAGAAGTTGA-CATATGGCCAAGTGGACTATTATTCCCTCATA
65 ATACCATTTT-CATTATATGATAAGAAATT-ATCATATGGCCAAATAGACTATTATTCCTTCATA
495282 TCAAAATACC
Statistics
Matches: 216, Mismatches: 33, Indels: 17
0.81 0.12 0.06
Matches are distributed among these distances:
128 4 0.02
129 76 0.35
130 36 0.17
131 96 0.44
132 4 0.02
ACGTcount: A:0.38, C:0.16, G:0.07, T:0.39
Consensus pattern (130 bp):
TAATTATGAAAATACCCTTTTCTCTTATAATTATTACTAAATAATCTCCTAAAAAATTACCAAAA
TACCATTTTCATTATATGATAAGAAATTATCATATGGCCAAATAGACTATTATTCCTTCATAACA
Found at i:495615 original size:129 final size:129
Alignment explanation
Indices: 495442--495894 Score: 371
Period size: 129 Copynumber: 3.5 Consensus size: 129
495432 TCCAAAGGTG
* * *
495442 CTATTATG-CCATTATATCATAATTACGAAAACACACCA--TCTCTTATAATTATTTACTAAATA
1 CTATTATGCCCA-CATAACATAATTAC-AAAA-AAACCACTTCTCTTATAATTATTTACTAAATA
* * ****
495504 ATCACCTATGAAATTACTAAAATGCCCTTTCCATTACACGATAAGAAATTGTTATGAGGCC-AAT
63 ATC-CCTAAGAAATTACTAAAATGCCCTTTCCATTACACGAAAAGAAATCCACATGAGGCCAAAT
495568 GGA
127 GGA
* * ** ** * * * *
495571 CTATTGTGGCTTCATAACATAATTATGAAAATACC-CTTTTTCTTATAATTATTTGCAAAATAAT
1 CTATTATGCCCACATAACATAATTACAAAAAAACCAC-TTCTCTTATAATTATTTACTAAATAAT
** * ** * * * *
495635 CTTTTAAGAAATTATTAAAATGCCCTTTAAATTATATGAAAAGAACTCCACATGTGGCCAAATGG
65 C-CCTAAGAAATTACTAAAATGCCCTTTCCATTACACGAAAAGAAATCCACATGAGGCCAAATGG
495700 A
129 A
* * *
495701 CTATTATGCCCACATACCGTAATTACAAAAAAACCACTTCTCTTATAATTATTAACTAAATAATC
1 CTATTATGCCCACATAACATAATTACAAAAAAACCACTTCTCTTATAATTATTTACTAAATAATC
* * * * * ** * *
495766 CCTAAGAGATTACCAAAATGCCCTTTCCATTATA-TAATAAAAAATTTACATGTGGCCAAATTGA
66 CCTAAGAAATTACTAAAATGCCCTTTCCATTACACGAA-AAGAAATCCACATGAGGCCAAATGGA
* * * * * *
495830 CTAATATACCCTCATATCATAATTACAAAAATA-CATCTTCTCTTATAATTATTCACTAAATAAT
1 CTATTATGCCCACATAACATAATTACAAAAAAACCA-CTTCTCTTATAATTATTTACTAAATAAT
495894 C
65 C
495895 TTGTATGAAA
Statistics
Matches: 256, Mismatches: 60, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
127 4 0.02
128 7 0.03
129 187 0.73
130 57 0.22
131 1 0.00
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.34
Consensus pattern (129 bp):
CTATTATGCCCACATAACATAATTACAAAAAAACCACTTCTCTTATAATTATTTACTAAATAATC
CCTAAGAAATTACTAAAATGCCCTTTCCATTACACGAAAAGAAATCCACATGAGGCCAAATGGA
Found at i:495926 original size:129 final size:128
Alignment explanation
Indices: 495459--496025 Score: 326
Period size: 129 Copynumber: 4.4 Consensus size: 128
495449 GCCATTATAT
* * * **
495459 CATAATTACGAAAACACACCA--TCTCTTATAATTATTTACTAAATAATCACCTATGAAATTACT
1 CATAATTAC-AAAA-AAACCACTTCTCTTATAATTATTAACTAAATAATC-CCTAAGAAATTAAA
* ** * ** * * * ** **
495522 AAAATGCCCTTTCCATTACACGATAAGAAATTGTTATGAGGCC-AATGGACTATTGTGGCTTCAT
63 AAAAT-CCCTTTCCATTATATAATAAAAAATTGACATGTGGCCAAATGGACTAATATACCCACAT
*
495586 AA
127 AC
** * * ** * ** **
495588 CATAATTATGAAAATACC-CTTTTTCTTATAATTATTTGCAAAATAATCTTTTAAGAAATTATTA
1 CATAATTACAAAAAAACCAC-TTCTCTTATAATTATTAACTAAATAATC-CCTAAGAAATTAAAA
** * * ** * *
495652 AAATGCCCTTTAAATTATATGAA-AAGAACTCCACATGTGGCCAAATGGACTATTATGCCCACAT
64 AAAT-CCCTTTCCATTATAT-AATAAAAAATTGACATGTGGCCAAATGGACTAATATACCCACAT
495716 AC
127 AC
* * **
495718 CGTAATTACAAAAAAACCACTTCTCTTATAATTATTAACTAAATAATCCCTAAGAGATTACCAAA
1 CATAATTACAAAAAAACCACTTCTCTTATAATTATTAACTAAATAATCCCTAAGAAATTAAAAAA
* * * *
495783 ATGCCCTTTCCATTATATAATAAAAAATTTACATGTGGCCAAATTGACTAATATACCCTCATAT
66 AT-CCCTTTCCATTATATAATAAAAAATTGACATGTGGCCAAATGGACTAATATACCCACATAC
* * ** *
495847 CATAATTACAAAAATA-CATCTTCTCTTATAATTATTCACTAAATAATCTTGTATGAAATTAAAA
1 CATAATTACAAAAAAACCA-CTTCTCTTATAATTATTAACTAAATAATC-CCTAAGAAATT-AAA
* * * * * * * * * * * * *
495911 AAAAT-CTTTTTCATTATGTGATAAGAAATTGACATATGGCTAAATGGAGTATTATTCTCTCATT
63 AAAATCCCTTTCCATTATATAATAAAAAATTGACATGTGGCCAAATGGACTAATATACCCACATA
495975 C
128 C
* * * *
495976 CATAATTATGAAAATAACC-CTTCTTTTATAGTTATT-A-TGAAATAATCCCT
1 CATAATTA-CAAAAAAACCACTTCTCTTATAATTATTAACT-AAATAATCCCT
496026 TATTAAAATA
Statistics
Matches: 343, Mismatches: 82, Indels: 28
0.76 0.18 0.06
Matches are distributed among these distances:
127 6 0.02
128 16 0.05
129 244 0.71
130 69 0.20
131 8 0.02
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (128 bp):
CATAATTACAAAAAAACCACTTCTCTTATAATTATTAACTAAATAATCCCTAAGAAATTAAAAAA
ATCCCTTTCCATTATATAATAAAAAATTGACATGTGGCCAAATGGACTAATATACCCACATAC
Found at i:496602 original size:822 final size:824
Alignment explanation
Indices: 494913--496613 Score: 1728
Period size: 822 Copynumber: 2.1 Consensus size: 824
494903 AAAATACCCT
* * * * * * *
494913 TTTTCTTATCATTATTTACTATATAATCCCTTAAAAAATTACAAAAATACCCTTTTCATTATATG
1 TTTTCTTATAATTATTTACTAAATAATCCC-TAAGAAATTACCAAAATGCCCTTTCCATTATATA
* * ** * ** *
494978 ATAAAAAATTTACATGTTGTCAAAAGGACTTTTATACCTTCATACCATAATTATGAAAATACCCT
65 ATAAAAAATTTACATGTGGCCAAAAGGACTAATATACCCTCATACCATAATTACAAAAATACCAT
* ** * * *
495043 TTTCTCTCATAATTATATACTAAATAATCTCCTAAGAAATTGCCAAAATACCATTTTCATTGTTT
130 CTTCTCTCATAATTATATACTAAATAATCTCCTAAGAAATTGAAAAAAAACCATTTTCATTATGT
* *
495108 GATAAGAAATTATCATATGGCCAAATAGACTATTATTTCTTCATAACATAGTTATGAAAATACTT
195 GATAAGAAATTATCATATGGCCAAATAGACTATTATTTCTTCATAACATAATTATGAAAATACTC
* * *** * *
495173 CTTCTTTTATAATTATTACTAAATAATCTCTTATTAAATTACCAAAATATGTTTTCCATTATATG
260 CTTCTTTTATAATTATTACTAAATAATCCCTTATTAAAATACCAAAATACCCTCTACATTATATG
* * * * * ** * * * ** *
495238 ATAAGAAGTTGACATATGGCCAAGTGGACTATTATTCCCTCATATCAAAATACCCCTTCTTTTAT
325 ACAAAAAGTTCACATATGGCCAAATGGACTATGACGCCCTCATACCAAAATAACACTTCACTTAC
** * * * * * * ** *
495303 AATCATTTATCAAATAATCTCATATGAAATTATCAAAATATTCTGTCCATTATATGATATATATT
390 AATCATTTAAAAAAAAAACCCATATAAAATTACCAAAATATTCTGTCAATTATACAATATACATT
* * ***
495368 AAAAGAATCCCTTACGAAATTACAAAACTGTGCATCCCATTATTTGATGAGAAAGTGACATGTGT
455 AAAAGAATCCCATACAAAATTACAAAACTACCCATCCCATTATTTGATGAGAAAGTGACATGTGT
** * * * * *
495433 CCAAAGGTGCTATTATGCCATTATATCATAATTACGAAAACACACCATCTCTTATAATTATTTAC
520 CCAAAGGCACTATTAAGCCATTATATCAAAACTACAAAAACACACCATATCTTATAATTATTTAC
* ** * * **
495498 TAAATAATCACCTATGAAATTACTAAAATGCCCTTTCCATTACACGATAAGAAATTGTTATGAGG
585 TAAATAATCACATAAAAAATTACCAAAATGCACTTTCCATTACACGATAAGAAATTGACATGAGG
* ** * ** ** * *
495563 CCAATGGACTATTGTGGCTTCATAACATAATTATGAAAATACCCTTTTTCTTATAATTATTTGCA
650 CCAATAGACTATTGTACCCTCATAACATAATTACAAAAATACCCAATTTCTTATAATTATATACA
** ** * * *
495628 AAATAATCTTTTAAGAAATTATTAAAATGCCCTTTAAATTATATGAAAAGAACTCCACATGTGGC
715 AAATAATCTCCTAAGAAATTACCAAAATACCCTTTAAATTATATGAAAAGAACTCAACATGTGAC
* *
495693 CAAATGGACTATTATGCCCACATACCGTAATTACAAAAAAACCAC
780 CAAATGGACTATTATGCCCACATACCATAAATACAAAAAAACCAC
* * *
495738 TTCTCTTATAATTATTAACTAAATAATCCCTAAGAGATTACCAAAATGCCCTTTCCATTATATAA
1 TTTTCTTATAATTATTTACTAAATAATCCCTAAGAAATTACCAAAATGCCCTTTCCATTATATAA
** *
495803 TAAAAAATTTACATGTGGCCAAATTGACTAATATACCCTCATATCATAATTACAAAAATA-CATC
66 TAAAAAATTTACATGTGGCCAAAAGGACTAATATACCCTCATACCATAATTACAAAAATACCATC
* ** * * *
495867 TTCTCTTATAATTAT-TCACTAAATAATCTTGTATGAAATT-AAAAAAAATCTTTTTCATTATGT
131 TTCTCTCATAATTATAT-ACTAAATAATCTCCTAAGAAATTGAAAAAAAACCATTTTCATTATGT
* * * **
495930 GATAAGAAATTGA-CATATGGCTAAATGGAGTATTA-TTCTCTCATTCCATAATTATGAAAATAA
195 GATAAGAAATT-ATCATATGGCCAAATAGACTATTATTTCT-TCATAACATAATTATGAAAAT-A
* **
495993 C-CCTTCTTTTATAGTTATTA-TGAAATAATCCCTTATTAAAATATTAAAATACCCTCTACATTA
257 CTCCTTCTTTTATAATTATTACT-AAATAATCCCTTATTAAAATACCAAAATACCCTCTACATTA
* * * *
496056 TATGACAAAAAGTTCACA-AGTTGCCAAATGGACTATGACGCTCTCATACCATAATTAAGACTTC
321 TATGACAAAAAGTTCACATA-TGGCCAAATGGACTATGACGCCCTCATACCA-AAATAACACTTC
* *
496120 ACTTACAATTATTTAGAAAAAAAAAACCCTTATAAAATTACCAAAATACCTT-T-TCAATTA-AC
384 ACTTACAATCATTT--AAAAAAAAAACCCATATAAAATTACCAAAATA--TTCTGTCAATTATAC
* * *
496182 AATATACATTAAAAGAATCCCATACAAAATTACAAGACTACCCATCCCATTATTTGATTAGCAAG
445 AATATACATTAAAAGAATCCCATACAAAATTACAAAACTACCCATCCCATTATTTGATGAGAAAG
* * * * * * *
496247 TGAGATGTTTCCAAATGCACTATTAAGCCCTTATATCAAAACTATAAAAATAC-CCTTATC-TAT
510 TGACATGTGTCCAAAGGCACTATTAAGCCATTATATCAAAACTACAAAAACACACCATATCTTAT
* ** * *
496310 AATTATTTCCTAAATAATC-CATAAAAAATTACCAAAATGCACTTTTTATTATATGATAAGAAAT
575 AATTATTTACTAAATAATCACATAAAAAATTACCAAAATGCACTTTCCATTACACGATAAGAAAT
* * * *
496374 TGACATGTGGCCAAATAGATTATTGTACCCTCTTATCATAATTACAAAAATACCCCAATTT-TTA
640 TGACATGAGGCC-AATAGACTATTGTACCCTCATAACATAATTACAAAAATA-CCCAATTTCTTA
* *** ** **
496438 TAATTATATATAAAATAAT-TCCTAATGAAATTACCAAAATATTGTTTCCATTATATGTTAAGAA
703 TAATTATATACAAAATAATCTCCTAA-GAAATTACCAAAATACCCTTTAAATTATATGAAAAGAA
* * * * * * * *
496502 GTTAACATGTGACCAAATTGACTATTGTG-CCATCATACCATAAATA-TAAAATATCTC
767 CTCAACATGTGACCAAATGGACTATTATGCCCA-CATACCATAAATACAAAAAAACCAC
* *
496559 TTTTCTTATAATTATTTACTAAATAATCGCCTATGAAATTACCAACATGCCCTTT
1 TTTTCTTATAATTATTTACTAAATAATC-CCTAAGAAATTACCAAAATGCCCTTT
496614 TTATTATTTG
Statistics
Matches: 702, Mismatches: 158, Indels: 35
0.78 0.18 0.04
Matches are distributed among these distances:
821 91 0.13
822 308 0.44
823 68 0.10
824 176 0.25
825 56 0.08
826 1 0.00
827 2 0.00
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (824 bp):
TTTTCTTATAATTATTTACTAAATAATCCCTAAGAAATTACCAAAATGCCCTTTCCATTATATAA
TAAAAAATTTACATGTGGCCAAAAGGACTAATATACCCTCATACCATAATTACAAAAATACCATC
TTCTCTCATAATTATATACTAAATAATCTCCTAAGAAATTGAAAAAAAACCATTTTCATTATGTG
ATAAGAAATTATCATATGGCCAAATAGACTATTATTTCTTCATAACATAATTATGAAAATACTCC
TTCTTTTATAATTATTACTAAATAATCCCTTATTAAAATACCAAAATACCCTCTACATTATATGA
CAAAAAGTTCACATATGGCCAAATGGACTATGACGCCCTCATACCAAAATAACACTTCACTTACA
ATCATTTAAAAAAAAAACCCATATAAAATTACCAAAATATTCTGTCAATTATACAATATACATTA
AAAGAATCCCATACAAAATTACAAAACTACCCATCCCATTATTTGATGAGAAAGTGACATGTGTC
CAAAGGCACTATTAAGCCATTATATCAAAACTACAAAAACACACCATATCTTATAATTATTTACT
AAATAATCACATAAAAAATTACCAAAATGCACTTTCCATTACACGATAAGAAATTGACATGAGGC
CAATAGACTATTGTACCCTCATAACATAATTACAAAAATACCCAATTTCTTATAATTATATACAA
AATAATCTCCTAAGAAATTACCAAAATACCCTTTAAATTATATGAAAAGAACTCAACATGTGACC
AAATGGACTATTATGCCCACATACCATAAATACAAAAAAACCAC
Found at i:496620 original size:129 final size:128
Alignment explanation
Indices: 496307--496673 Score: 343
Period size: 129 Copynumber: 2.8 Consensus size: 128
496297 TACCCTTATC
* * **
496307 TATAATTATTTCCTAAATAATCCATAAAAAATTACCAAAATGCACTTTTTATTATATGATAAGAA
1 TATAATTATTTACTAAATAATCCCTATGAAATTACCAAAATGCACTTTTTATTATATGATAAGAA
* * * * * * *
496372 ATTGACATGTGGCCAAATAGATTATTGTACCCTCTTATCATAATTACAAAAATACCCCAATTTT
66 ATTGACATGTGACCAAATTGACTATTGT-GCCTCATACCATAAATACAAAAATACCCCAATTTT
* * *
496436 TATAATTATATA-TAAAATAATTCCTAATGAAATTACCAAAAT--A-TTGTTTCCATTATATGTT
1 TATAATTATTTACT-AAATAATCCCT-ATGAAATTACCAAAATGCACTT-TTT--ATTATATGAT
* * * * * *
496497 AAGAAGTTAACATGTGACCAAATTGACTATTGTGCCATCATACCATAAATA-TAAAATATCTC-T
61 AAGAAATTGACATGTGACCAAATTGACTATTGTGCC-TCATACCATAAATACAAAAATACCCCAA
496560 TTTCT
125 TTT-T
* * *
496565 TATAATTATTTACTAAATAATCGCCTATGAAATTACCAACATGCCCTTTTTATTATTTGATAAGA
1 TATAATTATTTACTAAATAATC-CCTATGAAATTACCAAAATGCACTTTTTATTATATGATAAGA
* * * *
496630 AATTGACATATGA-CAAAATGAACTATTATGTTCTCATACCATAA
65 AATTGACATGTGACCAAATTG-ACTATTGTG-CCTCATACCATAA
496674 TTAAGAAAAT
Statistics
Matches: 192, Mismatches: 32, Indels: 28
0.76 0.13 0.11
Matches are distributed among these distances:
127 2 0.01
128 14 0.07
129 104 0.54
130 67 0.35
131 3 0.02
132 2 0.01
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.37
Consensus pattern (128 bp):
TATAATTATTTACTAAATAATCCCTATGAAATTACCAAAATGCACTTTTTATTATATGATAAGAA
ATTGACATGTGACCAAATTGACTATTGTGCCTCATACCATAAATACAAAAATACCCCAATTTT
Found at i:496852 original size:158 final size:157
Alignment explanation
Indices: 496564--496856 Score: 367
Period size: 158 Copynumber: 1.9 Consensus size: 157
496554 ATCTCTTTTC
* * * *
496564 TTATAATTATTTACTAAATAATCGCCTATGAAATTACCAACATGCCCTTTTTATTATTTGATAAG
1 TTATAATTATTTACTAAATAATCGCCTATGAAATTACCAAAATACCCTTTTTATTATTTAATAAA
* * * *
496629 AAATTGACATATGACAAAATGAACTATTATGTTCTCATACCATAATTAAGAAAATGCCTATTCTC
66 AAATTAACATATGACAAAATGAACAATTATGCTCTAATACCATAATTAAGAAAATGCCTATTCTC
496694 TTATATAAATAAGAAGATACCCATCTT
131 TTATATAAATAAGAAGATACCCATCTT
* *** *
496721 TTATAGTTATTTACTAAATAATCTTGTATGAAATTACCAAAATACCTTTTTTTATT-TTTCAATA
1 TTATAATTATTTACTAAATAATCGCCTATGAAATTACCAAAATACC-CTTTTTATTATTT-AATA
* * * * *
496785 AAAAATTAACATGTGGAC-AAATGGACAATTATGGCT-TAATATCATAATTACGAAAATGCCTTT
64 AAAAATTAACATAT-GACAAAATGAACAATTAT-GCTCTAATACCATAATTAAGAAAATGCCTAT
496848 TCTCTTATA
127 TCTCTTATA
496857 ATTATTTACT
Statistics
Matches: 114, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
157 43 0.38
158 66 0.58
159 5 0.04
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.38
Consensus pattern (157 bp):
TTATAATTATTTACTAAATAATCGCCTATGAAATTACCAAAATACCCTTTTTATTATTTAATAAA
AAATTAACATATGACAAAATGAACAATTATGCTCTAATACCATAATTAAGAAAATGCCTATTCTC
TTATATAAATAAGAAGATACCCATCTT
Found at i:496995 original size:130 final size:128
Alignment explanation
Indices: 496720--497671 Score: 620
Period size: 130 Copynumber: 7.3 Consensus size: 128
496710 ATACCCATCT
* ** ** * *
496720 TTTATAGTTATTTACTAAATAATCTTGTATGAAATTACCAAAATACCTTTTTTTATT-TTTCAAT
1 TTTATAATTATTTACTAAATAATC-CCTATGAAATTACCAAAATACC-TTTTCCATTATAT-GAT
* * * * * * * ** *
496784 AAAAAATTAACATGTGGAC-AAATGGACAATTATGGCTTAATATCATAATTACGAAAAT-GCCTT
63 AAGAAATTGACATGTGG-CTAAATGGACTATTATGCCATCATATCATAAATATAAAAATAGCC-A
496847 TTC
126 TTC
* *
496850 TCTTATAATTATTTACTAAATAATCCCTGATTAAATTACCAAAATACCTTTTTCATTATATGATA
1 T-TTATAATTATTTACTAAATAATCCCT-ATGAAATTACCAAAATACCTTTTCCATTATATGATA
* * * * * * * * * *
496915 ACAAGTTAACATGTGGCTGAATTGACTATTTTACCGTCATACCATAAATACAAAAATAGCCATTC
64 AGAAATTGACATGTGGCTAAATGGACTATTATGCCATCATATCATAAATATAAAAATAGCCATTC
*** * * ** *
496980 TTTAATAATTATTTACTAAATAATCACCTATGAAATTATTGAATTGCCCATTCCGTTATATGATA
1 TTT-ATAATTATTTACTAAATAATC-CCTATGAAATTACCAAAATACCTTTTCCATTATATGATA
* * * * * ** *
497045 AGAAATTGACATATAGCCAAATGGACTATTATGCCTTCATAGCATAGTTATAAGAAT-GCCACTT
64 AGAAATTGACATGTGGCTAAATGGACTATTATGCCATCATATCATAAATATAAAAATAGCCA-TT
497109 C
128 C
* * * * * * * *
497110 TCTTATAATTATTTACTAAATAATTTCTTAAGAAATTGCTAAAATATCGTTTCCATTGTATGATA
1 T-TTATAATTATTTACTAAATAA-TCCCTATGAAATTACCAAAATACCTTTTCCATTATATGATA
* * * * *
497175 AGAATTTGACATGTGG-TCAAATGGACTATTATGCTATCATATCATAATTATGAAAGTA-CCATT
64 AGAAATTGACATGTGGCT-AAATGGACTATTATGCCATCATATCATAAATATAAAAATAGCCA-T
*
497238 TT
127 TC
* * *
497240 TCTTATAATTATTTACTAAATAATCCCTATAAAATTACAAAAATAACCTTTT-CGTTATA-GATA
1 T-TTATAATTATTTACTAAATAATCCCTATGAAATTACCAAAAT-ACCTTTTCCATTATATGATA
* * * * *
497303 AAAAATTGACATGT-GATGAAATGGACAATTATGGCTTCATATCAT-AATCATAAAAAT-GCCCC
64 AGAAATTGACATGTGGCT-AAATGGACTATTATGCCATCATATCATAAAT-ATAAAAATAG--CC
497365 ATGTC
125 AT-TC
* * * * * *
497370 -TTATAATAATTTACTAGATAAACCCCCTATGGAATTACCAAAATGCGTTTTCCATTATATGATA
1 TTTATAATTATTTACTAAAT-AA-TCCCTATGAAATTACCAAAATACCTTTTCCATTATATGATA
* * * * ** *
497434 AGAAGTTAACATGTGGCTAAATTGACTATTTTGCCATCATATCAT-AATACGAAAATACCCATTC
64 AGAAATTGACATGTGGCTAAATGGACTATTATGCCATCATATCATAAATATAAAAATAGCCATTC
* * * * ** *
497498 TCTTATAGTTATTTACTAAATAATCGCTTATGAAATTAACAAAATTCCCGTTCCATTATATAATA
1 T-TTATAATTATTTACTAAATAATC-CCTATGAAATTACCAAAATACCTTTTCCATTATATGATA
* * * ** * * ** * * *
497563 AGAAATTGACATGCGAAC-AAATAGACTATTATGCTTTCATA-CCTAATTATGTAAATACCCCTC
64 AGAAATTGACATGTG-GCTAAATGGACTATTATGCCATCATATCATAAATATAAAAATAGCCATT
497626 C
128 C
* * * *
497627 TTTTATAATTATTTGCTTAATAATCCCTCAAGAAATTTCCAAAAT
1 -TTTATAATTATTTACTAAATAATCCCT-ATGAAATTACCAAAAT
497672 GCACTTTGCA
Statistics
Matches: 642, Mismatches: 148, Indels: 65
0.75 0.17 0.08
Matches are distributed among these distances:
127 3 0.00
128 70 0.11
129 150 0.23
130 326 0.51
131 91 0.14
132 2 0.00
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.37
Consensus pattern (128 bp):
TTTATAATTATTTACTAAATAATCCCTATGAAATTACCAAAATACCTTTTCCATTATATGATAAG
AAATTGACATGTGGCTAAATGGACTATTATGCCATCATATCATAAATATAAAAATAGCCATTC
Found at i:497189 original size:260 final size:256
Alignment explanation
Indices: 496802--497671 Score: 815
Period size: 260 Copynumber: 3.4 Consensus size: 256
496792 AACATGTGGA
* * **
496802 CAAATGGACAATTATGGCTTAATATCATAATTACGAAAATGCCTTTTCTCTTATAATTATTTACT
1 CAAATGGACAATTATGGCTTCATATCATAATTA-TAAAATGCCACTTCTCTTATAATTATTTACT
* * * * *
496867 AAATAATCCCTGATTAAATTACCAAAATACCTTTTTCATTATATGATAACAAGTTAACATGTGGC
65 AAATAATCCCTTATGAAATTACCAAAATACCGTTTCCATTATATGATAAGAAGTTAACATGTGGC
* * * * *
496932 TGAATTGACTATTTTACCGTCATACCATAAATACAAAAATAGCCATTCTTTAATAATTATTTACT
130 TAAATTGACTATTTTGCCATCATATCATAAATACGAAAATA-CCATTCTTT-ATAATTATTTACT
***
496997 AAATAATCACCTATGAAATTATTGAATTGCCCATTCCGTTATATGATAAGAAATTGACATAT-A-
193 AAATAATC-CCTATGAAATTACAAAATT-CCCATTCCGTTATATGATAAGAAATTGACATATGAT
497060 G
256 G
* * * *
497061 CCAAATGGACTATTATGCCTTCATAGCATAGTTATAAGAATGCCACTTCTCTTATAATTATTTAC
1 -CAAATGGACAATTATGGCTTCATATCATAATTATAA-AATGCCACTTCTCTTATAATTATTTAC
** * * * * * * *
497126 TAAATAATTTCTTAAGAAATTGCTAAAATATCGTTTCCATTGTATGATAAGAATTTGACATGTGG
64 TAAATAATCCCTTATGAAATTACCAAAATACCGTTTCCATTATATGATAAGAAGTTAACATGTGG
* * * * * * *
497191 -TCAAATGGACTATTATGCTATCATATCATAATTATGAAAGTACCATTTTTCTTATAATTATTTA
129 CT-AAATTGACTATTTTGCCATCATATCATAAATACGAAAATACCA-TTCT-TTATAATTATTTA
* ** * * * *
497255 CTAAATAATCCCTATAAAATTACAAAAATAACCTTTTCGTTATA-GATAAAAAATTGACATGTGA
191 CTAAATAATCCCTATGAAATTAC-AAAATTCCCATTCCGTTATATGATAAGAAATTGACATATGA
497319 TG
255 TG
* * * * *
497321 -AAATGGACAATTATGGCTTCATATCATAATCATAAAAATGCCCCATGTCTTATAATAATTTACT
1 CAAATGGACAATTATGGCTTCATATCATAATTAT-AAAATGCCACTTCTCTTATAATTATTTACT
* * * * *
497385 AGATAAACCCCCTATGGAATTACCAAAAT-GCGTTTTCCATTATATGATAAGAAGTTAACATGTG
65 AAAT-AATCCCTTATGAAATTACCAAAATACCG-TTTCCATTATATGATAAGAAGTTAACATGTG
*
497449 GCTAAATTGACTATTTTGCCATCATATCAT-AATACGAAAATACCCATTCTCTTATAGTTATTTA
128 GCTAAATTGACTATTTTGCCATCATATCATAAATACGAAAATA-CCATTCT-TTATAATTATTTA
* * * * **
497513 CTAAATAATCGCTTATGAAATTAACAAAATTCCCGTTCCATTATATAATAAGAAATTGACATGCG
191 CTAAATAATC-CCTATGAAATT-ACAAAATTCCCATTCCGTTATATGATAAGAAATTGACATATG
*
497578 A-A
254 ATG
* * * * * * * * *
497580 CAAATAGACTATTAT-GCTTTCATA-CCTAATTATGTAAATACCCCTCCTTTTATAATTATTTGC
1 CAAATGGACAATTATGGC-TTCATATCATAATTAT-AAAATGCCACTTCTCTTATAATTATTTAC
* * * *
497643 TTAATAATCCCTCAAGAAATTTCCAAAAT
64 TAAATAATCCCTTATGAAATTACCAAAAT
497672 GCACTTTGCA
Statistics
Matches: 487, Mismatches: 106, Indels: 36
0.77 0.17 0.06
Matches are distributed among these distances:
258 126 0.26
259 160 0.33
260 199 0.41
261 2 0.00
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.36
Consensus pattern (256 bp):
CAAATGGACAATTATGGCTTCATATCATAATTATAAAATGCCACTTCTCTTATAATTATTTACTA
AATAATCCCTTATGAAATTACCAAAATACCGTTTCCATTATATGATAAGAAGTTAACATGTGGCT
AAATTGACTATTTTGCCATCATATCATAAATACGAAAATACCATTCTTTATAATTATTTACTAAA
TAATCCCTATGAAATTACAAAATTCCCATTCCGTTATATGATAAGAAATTGACATATGATG
Found at i:499745 original size:126 final size:128
Alignment explanation
Indices: 499615--499941 Score: 306
Period size: 129 Copynumber: 2.6 Consensus size: 128
499605 GGTCTTATAT
* *
499615 CATAATTACAAAAATAC-CATTTCTCTTAT-A-ATTACCAAATCATC-CTTAACAAAATTACCAA
1 CATAATTACAAAAATACTC-CTTCTCTTATAATATTACCAAATAATCACTT-ACAAAATTACCAA
* *
499676 AATATCA-TTTCCATTATTTGATTAGAAATTGACATGTGGCCAACTAGTCTATTATTTCCTCATA
64 AATA-CACTTTCCATTATATGATAAGAAATTGACATGTGGCCAACTAGTCTATTATTTCCTCATA
499740 A
128 A
** * * **
499741 CATAATTACGGAAATACTCCTTCTTTTATAATTATTACTAAATAATCACTTATTAAATTACCAAA
1 CATAATTACAAAAATACTCCTTCTCTTATAA-TATTACCAAATAATCACTTACAAAATTACCAAA
* * *
499806 ATACACTTTCCATTATATGATAAGAAATTGACATGTGGCTAAAT-GAACTATTATTTCCT--T--
65 ATACACTTTCCATTATATGATAAGAAATTGACATGTGGCCAACTAG-TCTATTATTTCCTCATAA
* * * * *
499866 -AT-A-T-C-AAAATACTCCTTCTTTTATAATTATCTACTAAATAATCACATATAAAATTATCAA
1 CATAATTACAAAAATACTCCTTCTCTTATAA-TAT-TACCAAATAATCACTTACAAAATTACCAA
* *
499926 AAAACTCTTTCCATTA
64 AATACACTTTCCATTA
499942 CATAATATAT
Statistics
Matches: 174, Mismatches: 19, Indels: 21
0.81 0.09 0.10
Matches are distributed among these distances:
120 24 0.14
121 41 0.24
122 1 0.01
123 1 0.01
124 2 0.01
126 23 0.13
127 3 0.02
128 3 0.02
129 73 0.42
130 3 0.02
ACGTcount: A:0.40, C:0.18, G:0.05, T:0.37
Consensus pattern (128 bp):
CATAATTACAAAAATACTCCTTCTCTTATAATATTACCAAATAATCACTTACAAAATTACCAAAA
TACACTTTCCATTATATGATAAGAAATTGACATGTGGCCAACTAGTCTATTATTTCCTCATAA
Found at i:500461 original size:130 final size:129
Alignment explanation
Indices: 500086--501159 Score: 728
Period size: 130 Copynumber: 8.3 Consensus size: 129
500076 ACAAAAATAA
* * * * * *
500086 CTTATGAAATTACCAAAATACCCTTTCTACTACATGATAATAAATTGACATGGAGCCAAATGGAC
1 CTTATGAAATTACCAAAATACCCATTCCATTATATGATAAGAAATTGACAT-GTGCCAAATGGAC
* * * * * * * * * *
500151 CATTAT-TCTAT-ATTTCTATAATAACAAAAGTACCCCTTCCCTTATAATTATTTACTAAAAAAT
65 TATTATGCCT-TCA-TACCATAATTACAAAAATACACTTTCTCTTATAATTATTTACTAAATAAT
**
500214 TT
128 CC
* * *
500216 CTTTTGAAATTACCAAAATACCCATTCCATTATACGAGAAGAAGA-TGACATG-GCCAAATGGAC
1 CTTATGAAATTACCAAAATACCCATTCCATTATATGATAAGAA-ATTGACATGTGCCAAATGGAC
* * **
500279 TATTATGCCCTT-ATACCGTAATTACAAAAATACACTTTTTCAAATAATTATTTACTAAATAATC
65 TATTATG-CCTTCATACCATAATTACAAAAATACACTTTCTCTTATAATTATTTACTAAATAATC
500343 C
129 C
* * * * * *
500344 CTTATGATATTTCCAAAATATCAATTCCATTATATGATAAGAAGTTAACATGTAGCCAAACT-GA
1 CTTATGAAATTACCAAAATACCCATTCCATTATATGATAAGAAATTGACATGT-GCCAAA-TGGA
*
500408 CTACTATGCCTTCATACCATAATTACAAAAATA-ACTTTCCTCTTATAATTATTTACTAAATAAT
64 CTATTATGCCTTCATACCATAATTACAAAAATACACTTT-CTCTTATAATTATTTACTAAATAAT
*
500472 CG
128 CC
* * ** * *
500474 CTAATGAAATTACCAAAATGCCTTTTCC-TTCATATAATAAGAAATTGACTTGTGCCCAAATGGA
1 CTTATGAAATTACCAAAATACCCATTCCATT-ATATGATAAGAAATTGACATGTG-CCAAATGGA
* * * ** ** * * * *
500538 TTATTATGCCCTAATATAATAATTATGAATATACCCATTCTCTTATAATTATTTATTAAATAATC
64 CTATTATGCCTTCATACCATAATTACAAAAATACACTTTCTCTTATAATTATTTACTAAATAATC
500603 C
129 C
* * * * * * **
500604 CATAAGAAATTATCAAAATACCCTTTCTATTATACGATAAGAAATTGACATGTGGCCAAATAAAC
1 CTTATGAAATTACCAAAATACCCATTCCATTATATGATAAGAAATTGACATGT-GCCAAATGGAC
* * * ** * * * *
500669 TATTATGCCCTCATACCGTAGTTATGAAAATACCCCTTCTCCTATAATTATTTACTAAATAATTC
65 TATTATGCCTTCATACCATAATTACAAAAATACACTTTCTCTTATAATTATTTACTAAATAATCC
* * * * * * *
500734 CTTA-GAAAATTACCAAAATGCGCATTGCATTATATGATAAAAAATTTACATCGGGCCAAATTGA
1 CTTATG-AAATTACCAAAATACCCATTCCATTATATGATAAGAAATTGACAT-GTGCCAAATGGA
* * * *** * * *
500798 CTAATATGCAC-TCCTATCATAATTATGTAAAT--ACTGTTATTTTATAATTAATTACTAAATAA
64 CTATTATGC-CTTCATACCATAATTACAAAAATACACT-TTCTCTTATAATTATTTACTAAATAA
500860 TCC
127 TCC
* * * * * * * *
500863 CCTATGACATTACCAAAACAACCTTTCCATTACATGGTAAAAAATTGACATGTGACCAAATGGAC
1 CTTATGAAATTACCAAAATACCCATTCCATTATATGATAAGAAATTGACATGTG-CCAAATGGAC
* * *** * * * * * *
500928 TATTATTCCTTTATTTTAAAATTACAAAAAAAAACCCTTT-TCTTATTATTA-TTGCAAAATAAT
65 TATTATGCCTTCATACCATAATTAC--AAAAATACACTTTCTCTTATAATTATTTACTAAATAAT
*
500991 CT
128 CC
* * * * * * * *
500993 CTTATTAAATTACTAAAATACCC-TCGCCATTAAATAATAAGAAGTT-ATCATGTGGCTAAATTG
1 CTTATGAAATTACCAAAATACCCAT-TCCATTATATGATAAGAAATTGA-CATGT-GCCAAATGG
* * * * *
501056 ATTGTTATCCCTTCATACTATAATTACAAAAATATC-CCTTCTCTTATAATTATTTACTAAA-AA
63 ACTATTATGCCTTCATACCATAATTACAAAAATA-CACTTTCTCTTATAATTATTTACTAAATAA
501119 TCC
127 TCC
* * * * *
501122 CTTATGATACTACCAAAATTCCCTTTTCATTA-ATGATA
1 CTTATGAAATTACCAAAATACCCATTCCATTATATGATA
501160 TACATTAAAA
Statistics
Matches: 734, Mismatches: 177, Indels: 68
0.75 0.18 0.07
Matches are distributed among these distances:
128 114 0.16
129 143 0.19
130 450 0.61
131 23 0.03
132 2 0.00
133 2 0.00
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (129 bp):
CTTATGAAATTACCAAAATACCCATTCCATTATATGATAAGAAATTGACATGTGCCAAATGGACT
ATTATGCCTTCATACCATAATTACAAAAATACACTTTCTCTTATAATTATTTACTAAATAATCC
Found at i:501531 original size:130 final size:128
Alignment explanation
Indices: 501215--504160 Score: 2084
Period size: 130 Copynumber: 22.9 Consensus size: 128
501205 TTATTTAATG
* * ** * * *
501215 AGAAAGTGACATGTGTCCAAATATATTACTATGCAC-TCATACCATAATTATGAAAATACTTCTA
1 AGAAATTGACATGTGGCCAAATGGACTATTATGC-CTTCATACCATAATTATGAAAATAC-CCT-
* * * *
501279 T-TCTTATAATTATTTACTATATAAT-CCCTCACGAAATTACAAAAATACATTTCTC-TTATATG
63 TCTCTTATAATTATTTACTAAATAATCCCCT-ATGAAATTACCAAAATACCTTT-TCATTATATG
501341 ATA
126 ATA
* * * * * * *
501344 AGAAATTTAAATGTTGTCAAAAT-GATTTTTATGCCTTCATATCATAATTATGAAAATACCCATT
1 AGAAATTGACATG-TGGCCAAATGGACTATTATGCCTTCATACCATAATTATGAAAATACCC-TT
** * ** *
501408 CTCTTATAATTATTTACTAAATTGTCCCCAACAAAATTACCAAAATACTCTTTTCATTATTTGAT
64 CTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATAC-CTTTTCATTATATGAT
501473 A
128 A
* * * *
501474 AGAAATTGACATGTGGCCAAATGGATTATTATGCCTTCACACCATAATTATGAAAATACTCATTG
1 AGAAATTGACATGTGGCCAAATGGACTATTATGCCTTCATACCATAATTATGAAAATAC-CCTTC
* * ** *
501539 TCTTATAATTATTTACTAAATAATCCCATAAGAAATTTTCAAAATACCCTTTCCATTATATGATA
65 TCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATA-CCTTTTCATTATATGATA
* ** ** * * * *
501604 AGAAATTGACATATAACCAAATGGGTTATTATGCCCTCATATCATAATTATGAAAAAACCCATCT
1 AGAAATTGACATGTGGCCAAATGGACTATTATGCCTTCATACCATAATTATGAAAATACCCTTCT
* *
501669 CGTT-TAATTATTTACTAAATAATCTCCTATGAAATT-CTCAAAATGCCTTTAAT-ATTATATGA
66 C-TTATAATTATTTACTAAATAATCCCCTATGAAATTAC-CAAAATACCTTT--TCATTATATGA
501731 TA
127 TA
* * ** *** *
501733 AGAAATTGATATGTGGCCAAATGGACTATTATG-CTATCATATCATAATTACAAAAATATTTTTT
1 AGAAATTGACATGTGGCCAAATGGACTATTATGCCT-TCATACCATAATTATGAAAATACCCTTC
* * * * **
501797 TCTTATAATTATTTACTAAATTATCCCTTATAAAATTAGCAATTTACCTTTTTCATTATATGATA
65 TCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACC-TTTTCATTATATGATA
* * * * * * * *
501862 AGAAATTGACATGTGGCGAAAAGGACAATTATGGCTTCATATCATGATTATGAAAATGCCCCATC
1 AGAAATTGACATGTGGCCAAATGGACTATTATGCCTTCATACCATAATTATGAAAAT-ACCCTTC
* * * * * ** *
501927 TCTAATAATTAATTACTGAATCATCCCCTATTAAATTTTCAAAATACCTTTCCATTATATGATA
65 TCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACCTTTTCATTATATGATA
* * * * * * * * * **
501991 A-AAAGTTAACGTGTAGCTAAATTGACTATTTTGCCATCATATCATAAATATGAAAATACTTGTT
1 AGAAA-TTGACATGTGGCCAAATGGACTATTATGCCTTCATACCATAATTATGAAAATAC-CCTT
* * *
502055 CTCTTATAATTATTTACTAAATAATCACCTATGAAATTACCAAAATACCTATTCCGTTATATGAT
64 CTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACCT-TTTCATTATATGAT
502120 A
128 A
* * ** * * * *
502121 AAAAATTGACATGAGAACAAAGGGACTATCATGGCC-TCATACCATAATTATGTAAATATCCTTT
1 AGAAATTGACATGTGGCCAAATGGACTATTAT-GCCTTCATACCATAATTATGAAAATA-CCCTT
* * * * * * * * *
502185 CTCTTACAGTTTTTTGCTAAATAAT-CCTTCAAGAAATTTCCAAAATGCCATTTCAATTATATGA
64 CTCTTATAATTATTTACTAAATAATCCCCT-ATGAAATTACCAAAATACCTTTTC-ATTATATGA
502249 TA
127 TA
* ** * * * * * *
502251 CGAAATTGACATGTGGTGAATTGGACTATTAT-ACTCTCATTCCATAATTTTAAAAATAACGCTT
1 AGAAATTGACATGTGGCCAAATGGACTATTATGCCT-TCATACCATAATTATGAAAAT-ACCCTT
** * * * *
502315 CTCTTATAATTATTTACTAAATAATTTCGTATGAAATTACTAAAATACCATTTCTATTATACGAT
64 CTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACCTTTTC-ATTATATGAT
502380 A
128 A
* *
502381 AGAAATTGACATGTGGCCTAATGAACTATTATGGCC-TCATACCATAATTATGAAAATAACCCTT
1 AGAAATTGACATGTGGCCAAATGGACTATTAT-GCCTTCATACCATAATTATGAAAAT-ACCCTT
* * * * * * *
502445 CTCTTATAATTATTTACTAAATAATCACTTATGAAATTATCAACATTCCCCTTCCATTATATGAT
64 CTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAA-AATACCTTTTCATTATATGAT
502510 A
128 A
* * ** *
502511 AAAAATTGACATGCGAACAAATGGACTATTATG-CTCTCATACCATAATTATGCAAATATCCCTT
1 AGAAATTGACATGTGGCCAAATGGACTATTATGCCT-TCATACCATAATTATGAAAATA-CCCTT
* * * * * ** * *
502575 CTTTTATAATTATTTGCCAAATAATCCCTTAAGAAATTTTCAAAATGCACTTTTCATTATGTGAT
64 CTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATAC-CTTTTCATTATATGAT
502640 A
128 A
* * * * *
502641 AGAAATTGATAAGTGGCCAAATAGA-TAACTATGCCCTCCA-ACCATAATTAT--AAAT---CTT
1 AGAAATTGACATGTGGCCAAATGGACT-ATTATG-CCTTCATACCATAATTATGAAAATACCCTT
* * * * * * * *
502699 CTCTTATAATTATTTAATTAATAATTCTCTATGAAATTGCTAAAATACTTTTTCCATTATATAAT
64 CTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACCTTTT-CATTATATGAT
502764 A
128 A
* *** * *
502765 AGAAATTGACATGTCGCTTGATGGACTATT-TTCCTCTCATTCCATAATTATGAAAATACCCCTT
1 AGAAATTGACATGTGGCCAAATGGACTATTATGCCT-TCATACCATAATTATGAAAATA-CCCTT
* * * ** * * * * *
502829 TTGTTATAATTATTTGCTAAATAATTGCATCTAAAATTGCCAAAATACCCTTTTCATTATACGAT
64 CTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATA-CCTTTTCATTATATGAT
502894 A
128 A
* *
502895 AGAAATTGA-A--T-G-----T--ACTATTATGCCCTC--ACCATAATTAGGAAAATACCCCTTC
1 AGAAATTGACATGTGGCCAAATGGACTATTATGCCTTCATACCATAATTATGAAAATA-CCCTTC
* * * * * * * * * *
502947 ACTTATAGTTTTTTATTAAATAATCCCCCAAGAAATTACTAAAATGCATTTTCCATTATGTGATA
65 TCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACCTTTT-CATTATATGATA
* * * **
503012 AGAAATTGACATGTGGCCAAATGGACTATTAT-ACTATTATATCATAATTACAAAAATACCCCTT
1 AGAAATTGACATGTGGCCAAATGGACTATTATGCCT-TCATACCATAATTATGAAAATA-CCCTT
* * * * * * *
503076 TTTTTATAATTATTTACTAAATAATCCCTTAAGAAATTACCAAAATGCCATTTTAATAATATGAT
64 CTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACC-TTTTCATTATATGA-
503141 TA
127 TA
* ** * * * * * **
503143 AG-AATTTACATGTGGCCAAATTCACTAATATTCCCTCATATCGTAATTACAAAAATAGCCCTTC
1 AGAAATTGACATGTGGCCAAATGGACTATTATGCCTTCATACCATAATTATGAAAATA-CCCTTC
* * * * * * * * *
503207 TCTTACAGTTATTTACTATATCATCGCCAATCAAATTACCAAAATTCCTTTTCCATTACATGATA
65 TCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACCTTTT-CATTATATGATA
* * * * * *
503272 AGAAATT-AGCATGTGGCCAAATAGACTACTATTTCC-TCATTCCATAATTA-CAAAAGTATCCA
1 AGAAATTGA-CATGTGGCCAAATGGACTATTA-TGCCTTCATACCATAATTATGAAAA-TA-CCC
* * * ** * * * *
503334 TTCTTTTATAATTATTTATTAAAAAATCTACTATAAAATTACCAACATACCCTTTCCATTATACG
62 TTCTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATA-CCTTTTCATTATATG
503399 ATA
126 ATA
* ** * * * *
503402 AGAAGA-TGCCATGTGGCCAAATAAACTATTATGCCCTT-AAATCATAATTATGAAAATAAACTT
1 AGAA-ATTGACATGTGGCCAAATGGACTATTATG-CCTTCATACCATAATTATGAAAAT-ACCCT
* * * * * **** *
503465 TCCCATATAATTATTTACTAAATAATCCCTTATGATATTACGAAAATATCCACACCATTATATAA
63 TCTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATA-CCTTTTCATTATATGA
503530 TA
127 TA
* * * * * * * * *
503532 AGAAGTTAACATCTAGCCAAATTGACTACTATGTCTTCATACCATAATTACGAAAATACTCGTT-
1 AGAAATTGACATGTGGCCAAATGGACTATTATGCCTTCATACCATAATTATGAAAATAC-CCTTC
* ** ** * * * *
503596 TCTTACAATTATTTACTAAATAATCATCTACAAAATCACCAAAATGTCTTTTTTC-TTCATGTGA
65 TCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAAT-AC-CTTTTCATT-ATATGA
503660 TA
127 TA
* * * *
503662 AGAAATTTATATGTGGCCAAATGGACTATTATGCAC-TAATACAATAATTATGAAAATACCACTT
1 AGAAATTGACATGTGGCCAAATGGACTATTATGC-CTTCATACCATAATTATGAAAATACC-CTT
* * * * *
503726 CTCTTATAATTATTTACAAAATAAT-CCCTATAAAATTACCAAAATGCCCTTTTCGTTATACGAT
64 CTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAAT-ACCTTTTCATTATATGAT
503790 A
128 A
* * *
503791 AGAAATTGACATGTGGTCAAATGGACTATTA--CCCT-ATACCATAATTAAGAAAATATCCCTTC
1 AGAAATTGACATGTGGCCAAATGGACTATTATGCCTTCATACCATAATTATGAAAATA-CCCTTC
* * * * * *
503853 CCTTATAATTATTTACTAAATAAT-CTCTTTGAAAATTACCAAAATACCTGTTCAATTTTTTGAT
65 TCTTATAATTATTTACTAAATAATCCCCTATG-AAATTACCAAAATACCTTTTC-ATTATATGAT
503917 A
128 A
* * * * *
503918 AGAAGTTGTCATGTGGCAAAATGGACTATTATGACCTT-ATATCAAAATTATGAAAATAACCCTT
1 AGAAATTGACATGTGGCCAAATGGACTATTATG-CCTTCATACCATAATTATGAAAAT-ACCCTT
* * * * * * *
503982 CTTTTATAATTA-TTACTAAATAAGCCCTTATAAAATTATCGAAATACCCTTTCCATTATATGAT
64 CTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATA-CCTTTTCATTATATGAT
504046 A
128 A
* * * * * *
504047 AGAAGTT---ATGTGGCAAAATGGAATATTATGCCCTT-ATACTATAATTA-CAGAAATACCTAT
1 AGAAATTGACATGTGGCCAAATGGACTATTATG-CCTTCATACCATAATTATGA-AAATACC-CT
* * * * *
504107 TCTTTTATAATTATTTACTAAATAATCTCTTATGAAATTACCAAGACACCTTTT
63 TCTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACCTTTT
504161 TTTTAATGAT
Statistics
Matches: 2212, Mismatches: 497, Indels: 219
0.76 0.17 0.07
Matches are distributed among these distances:
116 5 0.00
117 71 0.03
118 1 0.00
119 8 0.00
120 4 0.00
121 2 0.00
122 3 0.00
123 7 0.00
124 78 0.04
125 5 0.00
126 119 0.05
127 80 0.04
128 31 0.01
129 523 0.24
130 1197 0.54
131 75 0.03
132 3 0.00
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.36
Consensus pattern (128 bp):
AGAAATTGACATGTGGCCAAATGGACTATTATGCCTTCATACCATAATTATGAAAATACCCTTCT
CTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACCTTTTCATTATATGATA
Found at i:505453 original size:129 final size:127
Alignment explanation
Indices: 505318--505689 Score: 318
Period size: 130 Copynumber: 2.9 Consensus size: 127
505308 TTATTTTTGA
* * * *
505318 AATTATGAGAATAAGCCTTCTTTTATAATTATTACTAAATGATCCTTTATTAAATTACCAAAATA
1 AATTATGAAAAT-ACCCTTCTTTTATAATTATTACAAAATAATCCTTTATTAAATTACCAAAATA
* *
505383 GCTGTTCCATTATATGATATGAAATTAACATGTAGCCAAATGGACTATTATGC-CTTCATACCAT
65 GCT-TTCCATTATATGATAAGAAATTAACATGTAGCCAAATGGACTATTATGCAC-TCATAACAT
* * ** ** *** ** *
505447 AGTTATGAAAATATCTCTTCACTTATAGA-TATTTACGGAATAATCCCACAAAAAATTACTAAAA
1 AATTATGAAAATA-CCCTTCTTTTATA-ATTA-TTACAAAATAATCCTTTATTAAATTACCAAAA
** * * * * * *
505511 T-GCCTTATTTATTATGTGATAAGAAATTTACATGTGGCTAAATGGACTAATATTCACTCATAAC
63 TAG-CTT-TCCATTATATGATAAGAAATTAACATGTAGCCAAATGGACTATTATGCACTCATAAC
505575 AT
126 AT
** * *
505577 AATTACAAAAATACCCATTCTTTTATAATTATTACAAAATAATCTTTTATTGAATTACCAAAATA
1 AATTATGAAAATACCC-TTCTTTTATAATTATTACAAAATAATCCTTTATTAAATTACCAAAATA
* * * * *
505642 TCCTTTCCATTAGATGATAAGAAGTTGACATGTTGCCAAATGGACTAT
65 -GCTTTCCATTATATGATAAGAAATTAACATGTAGCCAAATGGACTAT
505690 AATTCCCTTA
Statistics
Matches: 182, Mismatches: 51, Indels: 20
0.72 0.20 0.08
Matches are distributed among these distances:
128 1 0.01
129 83 0.46
130 97 0.53
131 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.36
Consensus pattern (127 bp):
AATTATGAAAATACCCTTCTTTTATAATTATTACAAAATAATCCTTTATTAAATTACCAAAATAG
CTTTCCATTATATGATAAGAAATTAACATGTAGCCAAATGGACTATTATGCACTCATAACAT
Found at i:505784 original size:2 final size:2
Alignment explanation
Indices: 505773--505814 Score: 52
Period size: 2 Copynumber: 21.5 Consensus size: 2
505763 CTCTCTCGAT
*
505773 TA TA TGA TA TA TA TA TA GA TA TA -A T- TA TA TA TA TA TA TA TA
1 TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
505814 T
1 T
505815 TAAAAGAATC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
1 2 0.06
2 31 0.89
3 2 0.06
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (2 bp):
TA
Found at i:506368 original size:129 final size:129
Alignment explanation
Indices: 505854--507008 Score: 987
Period size: 129 Copynumber: 9.0 Consensus size: 129
505844 TGCCCATCAT
* * * ** * * * * *
505854 ATTATTTGATAAAAAATTGGCATGTGTTCAAATGTATTATTATACCCTTATATCATAATTA-TAA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATATCATAATTACGAA
** * * * ***
505918 AATTATATCTTCTTTTATAATTATTTACTAAATAATCTCGTA-AGAAATTACCAAAAT-TTTTTT
66 AA-TA-CCCTTCTCTTATAATTATTTACTAAATAATCCCTTATA-AAATTACCAAAATACCCTTT
**
505981 TT
128 CC
* ** * * * * *
505983 GTTATATGATAAGAAATTGACATAAGGCCAAATTGACTACTATGCCCTTATACCATAATTATGAA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATATCATAATTACGAA
* ** * *
506048 AATTGCTTTTCTCTTATAATTATTTACTAAATAAT-CCTTA-AAAATTATCAAAATGCCCTTTCC
66 AA-TACCCTTCTCTTATAATTATTTACTAAATAATCCCTTATAAAATTACCAAAATACCCTTTCC
* * ** * ** * * * *
506111 ATTGTATGATAAGAAATTGAAATGTGGTTAAATGGACTACTATTTCGTCAAACCATAATAACGAA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATATCATAATTACGAA
* * * * * **
506176 AATATCCCTTGTCTTATAATTATTAACTTAATAATCCCTTAAAAAATTACCAAAATGCCCTTTTT
66 AATA-CCCTTCTCTTATAATTATTTACTAAATAATCCCTTATAAAATTACCAAAATACCCTTTCC
* * * * ** *
506241 AATATATGACAAGAAATTTACATGTGGCTAAATATACTAATATGCCCTCATATCATAATTACG-A
1 ATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATATCATAATTACGAA
* * * * * * *
506305 AATACCCATTATTTTGTAATTATTTATTAAATAATCCTTTATGAAATTACCAAAATACCCTTTTC
66 AATACCC-TTCTCTTATAATTATTTACTAAATAATCCCTTATAAAATTACCAAAATACCCTTTCC
* * * * * * *
506370 ATTACATGATAAGAAATTGATATGTGGCCAAAGGGACTATTATTCCTTCAT-TACATCATTATGA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATAT-CATAATTACGA
* *
506434 AAATAACCCTTCTCTTATAGTTA-TTAC-AATATAATCCCTTATTAAAA-TACTAAAATACCCTT
65 AAAT-ACCCTTCTCTTATAATTATTTACTAA-ATAATCCCTTA-TAAAATTACCAAAATACCCTT
506496 TCC
127 TCC
* * * **
506499 ATTATATGACAAGAAGTTCACATGTTACCAAATGGAAC-ATTATGCCCTCATATCATAATTACGA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATGG-ACTATTATGCCCTCATATCATAATTACGA
* * ** * *
506563 AAATACTCTT-TTTTATAATTATTTACTAAATAATCTTTTAGAAAATTACCAAAAT-CCCATTTG
65 AAATACCCTTCTCTTATAATTATTTACTAAATAATCCCTTATAAAATTACCAAAATACCC-TTTC
506626 C
129 C
* * * *
506627 ATTATATGATAAGAAATTTG-CATGTGACCAAA-GAGACTAATATGCCCGCATATCATAATTAAG
1 ATTATATGATAAGAAA-TTGACATGTGGCCAAATG-GACTATTATGCCCTCATATCATAATTACG
* * *
506690 AAAATACCCTTCTTTTATAATTATTTATTAAATAA-CTCTCTA-AAACATTACCAAAATACCCTT
64 AAAATACCCTTCTCTTATAATTATTTACTAAATAATCCCT-TATAAA-ATTACCAAAATACCCTT
506753 TCC
127 TCC
* * * * * * * * * *
506756 ATTACACGATAAGAAATTGACATATGACCAAATGGAATATTATTCCCTCATTTCAAAATTGCAAA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATATCATAATTACGAA
* * *
506821 AATAACCCTTCTCTTATAATTA-TTACTAAAAAATCCCTTATTAAATTACCAAAATACACTTTCC
66 AAT-ACCCTTCTCTTATAATTATTTACTAAATAATCCCTTATAAAATTACCAAAATACCCTTTCC
** * * * * * *
506885 ATTATATGACGAGGAGTTGACATGTGGCCAAATGGATTATTACGCCCTCATACCATAATTATGAA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATATCATAATTACGAA
* *
506950 AATACCCTTTCGCTTATAATTATTTACTAAATAATCCCCTATAAAATTACCAAAATACC
66 AATACCC-TTCTCTTATAATTATTTACTAAATAATCCCTTATAAAATTACCAAAATACC
507009 TTTTTTGTTA
Statistics
Matches: 824, Mismatches: 171, Indels: 61
0.78 0.16 0.06
Matches are distributed among these distances:
127 32 0.04
128 191 0.23
129 444 0.54
130 153 0.19
131 4 0.00
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (129 bp):
ATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCCTCATATCATAATTACGAA
AATACCCTTCTCTTATAATTATTTACTAAATAATCCCTTATAAAATTACCAAAATACCCTTTCC
Found at i:506610 original size:386 final size:385
Alignment explanation
Indices: 506162--507013 Score: 1091
Period size: 386 Copynumber: 2.2 Consensus size: 385
506152 ATTTCGTCAA
* * *
506162 ACCATAATAACGAAAATATCCCTTGTCTTATAATTATTAACTTAATAATCCCTTAAAAAATTACC
1 ACCATAATTACGAAAATA-CCCTT-TCTTATAATTATTTACTAAATAATCCCTTAAAAAATTACC
* * * * *
506227 AAAATGCCCTTTTTAATATATGACAAGAAATTTACATGTGGCTAAATATACTAATATGCCCTCAT
64 AAAAT-CCCTTTTTAATATATGACAAGAAATTTACATGTGACCAAAGAGACTAATATGCCCGCAT
* * * *
506292 ATCATAATTACG-AAATACCCATTATTTTGTAATTATTTATTAAATAA-TCCTTTATGAA-ATTA
128 ATCATAATTAAGAAAATACCC-TTATTTTATAATTATTTATTAAATAACT-CTCTA-AAACATTA
* * * * * * *
506354 CCAAAATACCCTTTTCATTACATGATAAGAAATTGATATGTGGCCAAAGGGACTATTATTCCTTC
190 CCAAAATACCCTTTCCATTACACGATAAGAAATTGACATATGACCAAAGGGAATATTATTCCCTC
** ** * *
506419 ATTACATCATTATGAAAATAACCCTTCTCTTATAGTTATTAC-AATATAATCCCTTATTAAAATA
255 ATTACAAAATTACAAAAATAACCCTTCTCTTATAATTATTACTAA-AAAATCCCTTATTAAAATA
* * * *
506483 CTAAAATACCCTTTCCATTATATGACAAGAAGTTCACATGTTACCAAATGGAACATTATGCCCTC
319 CCAAAATACACTTTCCATTATATGACAAGAAGTTCACATGTGACCAAATGGAACATTACGCCCTC
506548 AT
384 AT
* * * ** *
506550 ATCATAATTACGAAAATACTCTTTTTTATAATTATTTACTAAATAATCTTTTAGAAAATTACCAA
1 ACCATAATTACGAAAATACCCTTTCTTATAATTATTTACTAAATAATCCCTTAAAAAATTACCAA
** * * *
506615 AATCCCATTTGCATTATATGATAAGAAATTTGCATGTGACCAAAGAGACTAATATGCCCGCATAT
66 AATCCC-TTTTTAATATATGACAAGAAATTTACATGTGACCAAAGAGACTAATATGCCCGCATAT
*
506680 CATAATTAAGAAAATACCCTTCTTTTATAATTATTTATTAAATAACTCTCTAAAACATTACCAAA
130 CATAATTAAGAAAATACCCTTATTTTATAATTATTTATTAAATAACTCTCTAAAACATTACCAAA
* *
506745 ATACCCTTTCCATTACACGATAAGAAATTGACATATGACCAAATGGAATATTATTCCCTCATTTC
195 ATACCCTTTCCATTACACGATAAGAAATTGACATATGACCAAAGGGAATATTATTCCCTCATTAC
* *
506810 AAAATTGCAAAAATAACCCTTCTCTTATAATTATTACTAAAAAATCCCTTATTAAATTACCAAAA
260 AAAATTACAAAAATAACCCTTCTCTTATAATTATTACTAAAAAATCCCTTATTAAAATACCAAAA
* * * * **
506875 TACACTTTCCATTATATGACGAGGAGTTGACATGTGGCCAAATGGATTATTACGCCCTCAT
325 TACACTTTCCATTATATGACAAGAAGTTCACATGTGACCAAATGGAACATTACGCCCTCAT
* * *
506936 ACCATAATTATGAAAATACCCTTTCGCTTATAATTATTTACTAAATAATCCCCTATAAAATTACC
1 ACCATAATTACGAAAATACCCTTT--CTTATAATTATTTACTAAATAATCCCTTAAAAAATTACC
*
507001 AAAATACCTTTTT
64 AAAATCCCTTTTT
507014 TGTTAAATAT
Statistics
Matches: 395, Mismatches: 62, Indels: 15
0.84 0.13 0.03
Matches are distributed among these distances:
385 5 0.01
386 315 0.80
387 18 0.05
388 57 0.14
ACGTcount: A:0.39, C:0.19, G:0.08, T:0.35
Consensus pattern (385 bp):
ACCATAATTACGAAAATACCCTTTCTTATAATTATTTACTAAATAATCCCTTAAAAAATTACCAA
AATCCCTTTTTAATATATGACAAGAAATTTACATGTGACCAAAGAGACTAATATGCCCGCATATC
ATAATTAAGAAAATACCCTTATTTTATAATTATTTATTAAATAACTCTCTAAAACATTACCAAAA
TACCCTTTCCATTACACGATAAGAAATTGACATATGACCAAAGGGAATATTATTCCCTCATTACA
AAATTACAAAAATAACCCTTCTCTTATAATTATTACTAAAAAATCCCTTATTAAAATACCAAAAT
ACACTTTCCATTATATGACAAGAAGTTCACATGTGACCAAATGGAACATTACGCCCTCAT
Found at i:508064 original size:130 final size:126
Alignment explanation
Indices: 507825--508914 Score: 616
Period size: 130 Copynumber: 8.5 Consensus size: 126
507815 ATCATCTTTT
* * * * * * * **
507825 TTATAATTATTTACTAAATAATCTCTCATGAAATCACTAAAATGCCCTATGTATTATATGATAAG
1 TTATAATTATTAACTAAATAATCCCT-ATGAAATTACCAAAAT-ACTTTTCCATTATATGATAAG
* * *** * * *
507890 AAATTGAAATGTGGTCAAACT-GACTATTGTGCCTGAATACCATAATTACGAAAATAACCCTTCT
64 AAATTGACATGTGGCCAAA-TGGACTAACAT-CAT-CATATCATAATTACGAAAATAACCCTTCT
507954 C
126 C
* ** *
507955 TTATAATTATTAACTAAATAATTCCCTAGGAAATTATTAAAATGTCTTTTCCATTATATGATAAG
1 TTATAATTATTAACTAAATAA-TCCCTATGAAATTACCAAAAT-ACTTTTCCATTATATGATAAG
* * * * * * * * * * *
508020 GAATTTATATGTAGCGAAATTGACTAACATGGCATCATATCATAATTACGAAAACATCTCATCCC
64 AAATTGACATGTGGCCAAATGGACTAACAT--CATCATATCATAATTACGAAAATAACCCTTCTC
* * * * **
508085 TTGTAATTATTTACTAAATAATCACTTATGAAATTACAAAAATATCCTTTTCCATTACGTGATAA
1 TTATAATTATTAACTAAATAATC-CCTATGAAATTACCAAAATA--CTTTTCCATTATATGATAA
* * * * * *
508150 GAAATTGACATGTGACCAAGTGGACTATTAC-TCTTTCAT-TCCATAATTTCAAAAATAACCC-A
63 GAAATTGACATGTGGCCAAATGGACTA--ACATC-ATCATAT-CATAATTACGAAAATAACCCTT
*
508212 CTT
124 CTC
* *
508215 TTATAATTATT-ACCAAATAATCCCTTATTAAATTACCAAAATAACTTTTCCATTATATGATAAG
1 TTATAATTATTAACTAAATAATCCC-TATGAAATTACCAAAAT-ACTTTTCCATTATATGATAAG
** * * * *
508279 AAATTGACATGTGGCCAAATGGACTATTAT--TC-TCTCGT-A-T-C-AAAATACCCCTTGTC
64 AAATTGACATGTGGCCAAATGGACTAACATCATCATATCATAATTACGAAAATAACCCTTCTC
* * ** * * * * *
508335 TTATAATTATTTAGTAAATAATTTACTATGAAAATCCCAAAATGCTCTTTCCATTATACGATAAT
1 TTATAATTATTAACTAAATAA-TCCCTATGAAATTACCAAAATACT-TTTCCATTATATGATAAG
* * * ** ** * *
508400 AAATTAACATGAGGTCAAATGGACTATTATGCCCCTATACCATAATTACGAAAAT-ACCTTTCTC
64 AAATTGACATGTGGCCAAATGGACTAACAT-CATC-ATATCATAATTACGAAAATAACCCTTCTC
* * * * *
508464 TTATGATTATTAACTAAATAATCCCTTAGGAAATTACCAAAATGCTCTTTCCAATATATGATAAA
1 TTATAATTATTAACTAAATAATCCC-TATGAAATTACCAAAATACT-TTTCCATTATATGATAAG
* * * * * * * *
508529 AAATTTACATGTGGCCAAATTGACTAATAAGCCAACATATAATAATTACAAAAAT-ACATCTTCT
64 AAATTGACATGTGGCCAAATGGACTAA-CA-TCATCATATCATAATTACGAAAATAAC-CCTTCT
508593 C
126 C
* * * * * ** * *
508594 TCATAATTATTTACTCAATAATCTACTATGAAAATATAAAAATACCCTTTTCCACTACATGATAA
1 TTATAATTATTAACTAAATAATC-CCTATGAAATTACCAAAATA--CTTTTCCATTATATGATAA
* * * * * *
508659 GAAATTGACATGTGGTCAAATAGACT-ACTATTCCCTCAT-TCCATAATTATGAAAGTAACCCAT
63 GAAATTGACATGTGGCCAAATGGACTAAC-A-T-CATCATAT-CATAATTACGAAAATAACCCTT
508722 CTC
124 CTC
* *
508725 TTATAATTA-TAACTAAATAATCCCCTATTAAATTACCAAAATACCTTTTTCATTATATGATAAG
1 TTATAATTATTAACTAAATAAT-CCCTATGAAATTACCAAAATA-CTTTTCCATTATATGATAAG
* * * * ** * * * * *
508789 AAGTTGACATATTGTCAAATGGACTATTATGCCTTCATACCATAAATACGAAAAT-ACTCATTCC
64 AAATTGACATGTGGCCAAATGGACTAACAT--CATCATATCATAATTACGAAAATAAC-CCTTCT
508853 C
126 C
** * * * *
508854 TTATAATTATTTGCTAAAAAAACCACTATAAAATTACCAAAATATTCTTTCCATTA-ATGAT
1 TTATAATTATTAACTAAATAATCC-CTATGAAATTACCAAAATACT-TTTCCATTATATGAT
508915 GTATATTAAA
Statistics
Matches: 741, Mismatches: 173, Indels: 93
0.74 0.17 0.09
Matches are distributed among these distances:
119 9 0.01
120 15 0.02
121 65 0.09
122 3 0.00
123 3 0.00
124 4 0.01
126 3 0.00
127 2 0.00
128 49 0.07
129 205 0.28
130 247 0.33
131 129 0.17
132 5 0.01
133 2 0.00
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (126 bp):
TTATAATTATTAACTAAATAATCCCTATGAAATTACCAAAATACTTTTCCATTATATGATAAGAA
ATTGACATGTGGCCAAATGGACTAACATCATCATATCATAATTACGAAAATAACCCTTCTC
Found at i:508226 original size:260 final size:255
Alignment explanation
Indices: 507825--508914 Score: 885
Period size: 260 Copynumber: 4.2 Consensus size: 255
507815 ATCATCTTTT
* * ** * *
507825 TTATAATTATTTACTAAATAATCTCTCATG-AAATCACTAAAATGCCCTATGT--ATTATATGAT
1 TTATAATTATTTACTAAATAATCACT-ATGAAAAT-ACAAAAATATCCT-TTTCCATTACATGAT
* * * *
507887 AAGAAATTGAAATGTGGTCAAACT-GACTATTGTGCCTGAATACCATAATTACGAAAATAACCCT
63 AAGAAATTGACATGTGGTCAAA-TGGACTATTAT-CCT-CATTCCATAATTACGAAAATAACCC-
* ** *
507951 TCTCTTATAATTATTAACTAAATAATTCCC-TAGGAAATTATTAAAATGTCTTTTCCATTATATG
124 ACTCTTATAATTATTAACTAAATAA-TCCCTTAGGAAATTACCAAAAT-ACTTTTCCATTATATG
* * * * * * * * *
508015 ATAAGGAATTTATATGTAGCGAAATTGACTAACATGGCATCATATCATAATTACGAAAACATCTC
187 ATAAGAAATTGACATGTGGCCAAATGGACTAATATGCCATCATATCATAATTAC-AAAATATCTC
508080 ATCCC
251 ATCCC
* * *
508085 TTGTAATTATTTACTAAATAATCACTTATGAAATTACAAAAATATCCTTTTCCATTACGTGATAA
1 TTATAATTATTTACTAAATAATCAC-TATGAAAATACAAAAATATCCTTTTCCATTACATGATAA
** * * * * *
508150 GAAATTGACATGTGACCAAGTGGACTATTACTCTTTCATTCCATAATTTCAAAAATAACCCACTT
65 GAAATTGACATGTGGTCAAATGGACTATTA-TC-CTCATTCCATAATTACGAAAATAACCCACTC
* **
508215 TTATAATTATT-ACCAAATAATCCCTTATTAAATTACCAAAATAACTTTTCCATTATATGATAAG
128 TTATAATTATTAACTAAATAATCCCTTAGGAAATTACCAAAAT-ACTTTTCCATTATATGATAAG
* * * * * * **
508279 AAATTGACATGTGGCCAAATGGACTATTAT----TC-TCTCGT-A-T-CAAAATACCCCTTGTC
192 AAATTGACATGTGGCCAAATGGACTAATATGCCATCATATCATAATTACAAAATATCTCATCCC
* * ** * * *
508335 TTATAATTATTTAGTAAATAATTTACTATGAAAAT-CCCAAA-ATGCTCTTTCCATTATACGATA
1 TTATAATTATTTACTAAATAA-TCACTATGAAAATACAAAAATATCCT-TTTCCATTACATGATA
* * * * * **
508398 ATAAATTAACATGAGGTCAAATGGACTATTATGCCCCTATACCATAATTACGAAAAT-ACCTTTC
64 AGAAATTGACATGTGGTCAAATGGACTATTAT-CCTC-ATTCCATAATTACGAAAATAACC-CAC
* * *
508462 TCTTATGATTATTAACTAAATAATCCCTTAGGAAATTACCAAAATGCTCTTTCCAATATATGATA
126 TCTTATAATTATTAACTAAATAATCCCTTAGGAAATTACCAAAATACT-TTTCCATTATATGATA
* * * * * * *
508527 AAAAATTTACATGTGGCCAAATTGACTAATAAGCCAACATATAATAATTACAAAA-ATACATCTT
190 AGAAATTGACATGTGGCCAAATGGACTAATATGCCATCATATCATAATTACAAAATAT-C-TCAT
*
508591 CTC
253 CCC
* * * * *
508594 TCATAATTATTTACTCAATAATCTACTATGAAAATATAAAAATACCCTTTTCCACTACATGATAA
1 TTATAATTATTTACTAAATAATC-ACTATGAAAATACAAAAATATCCTTTTCCATTACATGATAA
* * * *
508659 GAAATTGACATGTGGTCAAATAGACTACTATTCCCTCATTCCATAATTATGAAAGTAACCCATCT
65 GAAATTGACATGTGGTCAAATGGACTATTA-T-CCTCATTCCATAATTACGAAAATAACCCA-CT
* ** *
508724 CTTATAATTA-TAACTAAATAATCCCCTATTAAATTACCAAAATACCTTTTTCATTATATGATAA
127 CTTATAATTATTAACTAAATAATCCCTTAGGAAATTACCAAAATA-CTTTTCCATTATATGATAA
* * * * * * * *
508788 GAAGTTGACATATTGTCAAATGGACTATTATGCCTTCATACCATAAATACGAAAATA-CTCATTC
191 GAAATTGACATGTGGCCAAATGGACTAATATGCCATCATATCATAATTAC-AAAATATCTCA-TC
508852 CC
254 CC
* * * * *
508854 TTATAATTATTTGCTAAAAAAACCACTAT-AAAATTACCAAAATATTC-TTTCCATTA-ATGAT
1 TTATAATTATTTACT-AAATAATCACTATGAAAA-TACAAAAATATCCTTTTCCATTACATGAT
508915 GTATATTAAA
Statistics
Matches: 650, Mismatches: 143, Indels: 76
0.75 0.16 0.09
Matches are distributed among these distances:
248 9 0.01
249 73 0.11
250 106 0.16
251 4 0.01
252 1 0.00
253 1 0.00
254 5 0.01
255 5 0.01
256 1 0.00
257 2 0.00
258 16 0.02
259 113 0.17
260 220 0.34
261 91 0.14
262 3 0.00
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (255 bp):
TTATAATTATTTACTAAATAATCACTATGAAAATACAAAAATATCCTTTTCCATTACATGATAAG
AAATTGACATGTGGTCAAATGGACTATTATCCTCATTCCATAATTACGAAAATAACCCACTCTTA
TAATTATTAACTAAATAATCCCTTAGGAAATTACCAAAATACTTTTCCATTATATGATAAGAAAT
TGACATGTGGCCAAATGGACTAATATGCCATCATATCATAATTACAAAATATCTCATCCC
Found at i:508513 original size:129 final size:130
Alignment explanation
Indices: 508333--508914 Score: 457
Period size: 129 Copynumber: 4.5 Consensus size: 130
508323 ATACCCCTTG
* * ** * * * *
508333 TCTTATAATTATTTAGTAAATAATTTAC-TATGAAAATCCCAAAATGCTCTTTCCATTATACGAT
1 TCTTATAATTATTAACTAAATAA-TCCCTTATGAAATTACCAAAATACTCTTTCCATTATATGAT
* *
508397 AATAAATTAACATGAGGTCAAATGGACTATTATGCCCCT-ATACCATAATTACGAAAATACCTTT
65 AAGAAATTGACATGAGGTCAAATGGACTATTATGCCCCTCATACCATAATTACGAAAATACCTTT
508461 C
130 C
* * * *
508462 TCTTATGATTATTAACTAAATAATCCCTTAGGAAATTACCAAAATGCTCTTTCCAATATATGATA
1 TCTTATAATTATTAACTAAATAATCCCTTATGAAATTACCAAAATACTCTTTCCATTATATGATA
* * * * * * * ** ** * *
508527 AAAAATTTACATGTGGCCAAATTGACTAATAAG-CCAACATATAATAATTACAAAAATACATCTT
66 AGAAATTGACATGAGGTCAAATGGACTATTATGCCCCTCATACCATAATTACGAAAATACCT-TT
508591 C
130 C
* * * * * ** * * *
508592 TCTCATAATTATTTACTCAATAATCTAC-TATGAAAATATAAAAATACCCTTTTCCACTACATGA
1 TCTTATAATTATTAACTAAATAATC-CCTTATGAAATTACCAAAATACTC-TTTCCATTATATGA
* * * * * * * *
508656 TAAGAAATTGACATGTGGTCAAATAGACTACTAT-TCCCTCATTCCATAATTATGAAAGTAACCC
64 TAAGAAATTGACATGAGGTCAAATGGACTATTATGCCCCTCATACCATAATTACGAAAAT-ACCT
*
508720 ATC
128 TTC
* * *
508723 TCTTATAATTA-TAACTAAATAATCCCCTATTAAATTACCAAAATAC-CTTTTTCATTATATGAT
1 TCTTATAATTATTAACTAAATAATCCCTTATGAAATTACCAAAATACTC-TTTCCATTATATGAT
* * * * *
508786 AAGAAGTTGACAT-ATTGTCAAATGGACTATTATG-CCTTCATACCATAAATACGAAAATACTCA
65 AAGAAATTGACATGA-GGTCAAATGGACTATTATGCCCCTCATACCATAATTACGAAAATAC-CT
508849 TTC
128 TTC
* ** * * * *
508852 CCTTATAATTATTTGCTAAAAAAACCAC-TATAAAATTACCAAAATATTCTTTCCATTA-ATGAT
1 TCTTATAATTATTAACTAAATAATCC-CTTATGAAATTACCAAAATACTCTTTCCATTATATGAT
508915 GTATATTAAA
Statistics
Matches: 355, Mismatches: 84, Indels: 28
0.76 0.18 0.06
Matches are distributed among these distances:
128 6 0.02
129 176 0.50
130 100 0.28
131 71 0.20
132 2 0.01
ACGTcount: A:0.40, C:0.18, G:0.07, T:0.34
Consensus pattern (130 bp):
TCTTATAATTATTAACTAAATAATCCCTTATGAAATTACCAAAATACTCTTTCCATTATATGATA
AGAAATTGACATGAGGTCAAATGGACTATTATGCCCCTCATACCATAATTACGAAAATACCTTTC
Found at i:508700 original size:509 final size:506
Alignment explanation
Indices: 507725--508821 Score: 1329
Period size: 509 Copynumber: 2.2 Consensus size: 506
507715 CTATTTACTG
* ** * * *
507725 AATAATTCCTTAAGAAATTACCAAAATGCCTTTTTCATTATATGATAAGAAATTGACATAAGGCT
1 AATAATCCCTTATTAAATTACCAAAATACCTTTTTCATTATATGATAAGAAATTGACATATGGCC
* *
507790 AAATGGACTATTATGCCCTCAAGAAATCATCTTTTTTATAATTATTTACTAAATAATCTCTCATG
66 AAATGGACTATTATGCCCTCAAGAAATCACCTTTCTTATAATTATTTACTAAATAATCTCTCATG
* ** * * *
507855 AAATCACTAAAATGCCCTATGTATTATATGATAAGAAATTGAAATGTGGTCAAACTGACTATTGT
131 AAATCACCAAAATGCCCTATCCATTATACGATAAGAAATTGAAATGAGGTCAAACTGACTATTAT
**
507920 GCCTGAATACCATAATTACGAAAATAACCCTTCTCTTATAATTATTAACTAAATAATTCCCTAGG
196 GCCCCAATACCATAATTACGAAAATAACCCTTCTCTTATAATTATTAACTAAATAATTCCCTAGG
** * ** * * *
507985 AAATTATTAAAATGTCTTTTCCATTATATGATAAGGAATTTATATGTAGCGAAATTGACTAACAT
261 AAATTACCAAAATGTCTTTTCCAATATATGATAAAAAATTTACATGTAGCCAAATTGACTAACAA
* * * **
508050 GGCATCATATCATAATTACGAAAACATCTCATCCCTTGTAATTATTTACTAAATAATCACTTATG
326 GCCAACATATAATAATTACGAAAACATCTCATCCCTCATAATTATTTACTAAATAATCACTTATG
* * * * * * *
508115 AAATTACAAAAATATCCTTTTCCATTACGTGATAAGAAATTGACATGTGACCAAGTGGACTATTA
391 AAAATACAAAAATACCCTTTTCCACTACATGATAAGAAATTGACATGTGACCAAATAGACTACTA
** * *
508180 CTCTTTCATTCCATAATT-TCAAAAATAACCCA-CTTTTATAATTATTACCA
456 CTCCCTCATTCCATAATTAT-AAAAATAACCCATCTCTTATAATTATAACCA
* * *
508230 AATAATCCCTTATTAAATTACCAAAATAACTTTTCCATTATATGATAAGAAATTGACATGTGGCC
1 AATAATCCCTTATTAAATTACCAAAATACCTTTTTCATTATATGATAAGAAATTGACATATGGCC
* * * * *
508295 AAATGGACTATTATTCTCTCGTATCA-AAATACCCCTTGTCTTATAATTATTTAGTAAATAATTT
66 AAATGGACTATTATGCCCTC--A--AGAAAT-CACCTT-TCTTATAATTATTTACTAAATAATCT
* * *
508359 ACT-ATGAAAATC-CCAAAATGCTCTTTCCATTATACGATAATAAATT-AACATGAGGTCAAA-T
125 -CTCATG-AAATCACCAAAATGCCCTATCCATTATACGATAAGAAATTGAA-ATGAGGTCAAACT
* * *
508420 GGACTATTATGCCCCTATACCATAATTACGAAAAT-ACCTTTCTCTTATGATTATTAACTAAATA
187 -GACTATTATGCCCCAATACCATAATTACGAAAATAACCCTTCTCTTATAATTATTAACTAAATA
*
508484 A-TCCCTTAGGAAATTACCAAAATG-CTCTTTCCAATATATGATAAAAAATTTACATGTGGCCAA
251 ATTCCC-TAGGAAATTACCAAAATGTCT-TTTCCAATATATGATAAAAAATTTACATGTAGCCAA
* * * *
508547 ATTGACTAATAAGCCAACATATAATAATTAC-AAAA-ATACATCTTCTCTCATAATTATTTACTC
314 ATTGACTAACAAGCCAACATATAATAATTACGAAAACAT-C-TCATCCCTCATAATTATTTACTA
* *
508610 AATAATCTAC-TATGAAAATATAAAAATACCCTTTTCCACTACATGATAAGAAATTGACATGTGG
377 AATAATC-ACTTATGAAAATACAAAAATACCCTTTTCCACTACATGATAAGAAATTGACATGTGA
* * * * *
508674 TCAAATAGACTACTATTCCCTCATTCCATAATTATGAAAGTAACCCATCTCTTATAATTATAACT
441 CCAAATAGACTACTACTCCCTCATTCCATAATTATAAAAATAACCCATCTCTTATAATTATAACC
508739 A
506 A
* * * *
508740 AATAATCCCCTATTAAATTACCAAAATACCTTTTTCATTATATGATAAGAAGTTGACATATTGTC
1 AATAATCCCTTATTAAATTACCAAAATACCTTTTTCATTATATGATAAGAAATTGACATATGGCC
508805 AAATGGACTATTATGCC
66 AAATGGACTATTATGCC
508822 TTCATACCAT
Statistics
Matches: 500, Mismatches: 75, Indels: 29
0.83 0.12 0.05
Matches are distributed among these distances:
505 74 0.15
507 3 0.01
508 15 0.03
509 217 0.43
510 184 0.37
511 7 0.01
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.35
Consensus pattern (506 bp):
AATAATCCCTTATTAAATTACCAAAATACCTTTTTCATTATATGATAAGAAATTGACATATGGCC
AAATGGACTATTATGCCCTCAAGAAATCACCTTTCTTATAATTATTTACTAAATAATCTCTCATG
AAATCACCAAAATGCCCTATCCATTATACGATAAGAAATTGAAATGAGGTCAAACTGACTATTAT
GCCCCAATACCATAATTACGAAAATAACCCTTCTCTTATAATTATTAACTAAATAATTCCCTAGG
AAATTACCAAAATGTCTTTTCCAATATATGATAAAAAATTTACATGTAGCCAAATTGACTAACAA
GCCAACATATAATAATTACGAAAACATCTCATCCCTCATAATTATTTACTAAATAATCACTTATG
AAAATACAAAAATACCCTTTTCCACTACATGATAAGAAATTGACATGTGACCAAATAGACTACTA
CTCCCTCATTCCATAATTATAAAAATAACCCATCTCTTATAATTATAACCA
Found at i:509400 original size:129 final size:129
Alignment explanation
Indices: 509022--510236 Score: 947
Period size: 129 Copynumber: 9.4 Consensus size: 129
509012 TAAAAATACA
* * * ** *
509022 AAAATACCACTTCTCTTATCATTATTTACTAAATAATACACTA-AAAATTATGAAAATTCCCTTT
1 AAAATACCCCTTCTCTTATAATTATTTACTAAATAAT-CCCTATAAAATTACCAAAATGCCCTTT
* * * * *
509086 CCATTATATGATAAGAAATTGAAATGTGGCCAAATTGACTATTAT--ACAC-T--CAT-ATTACG
65 CCATTATATGATAAGAAATTGACATGTGGCCAAATAGACTATTATGCCCTCATACCATAATTATG
* * * * * * * *
509145 AAAATACCACTTTTCTTATAATTGTGTACCAAATAATCTCCTCAGT--AGTTACCAAATTACCCT
1 AAAATACCCCTTCTCTTATAATTATTTACTAAATAATC-CCT-A-TAAAATTACCAAAATGCCCT
* * * * * * ** * *
509208 TTTCATTATATGATAAGAAATTGACATGTAGCTAAATGGATTATTGTGCTTTTATATCATAATTA
63 TTCCATTATATGATAAGAAATTGACATGTGGCCAAATAGACTATTATGCCCTCATACCATAATT-
509273 AT-
127 ATG
* * * *
509275 AAAATACCCCTTTTTTTATACTTATTTACTAAATAATCCCT-TAAAAATTATCAAAATGCCC-TT
1 AAAATACCCCTTCTCTTATAATTATTTACTAAATAATCCCTAT-AAAATTACCAAAATGCCCTTT
* * * * *
509338 CTCATTATATGATAA-AAAGTTGGCTTGTGGCCAAATAAACTACTATGCTCTCATACCATAATTA
65 C-CATTATATGATAAGAAA-TTGACATGTGGCCAAATAGACTATTATGCCCTCATACCATAATTA
**
509402 CA
128 TG
* * * *
509404 AAAATATCCCTTCTTTTATAACTATATTT--TAAATAATCTCTCA-AGAAATTA-CTAAA-GCAC
1 AAAATACCCCTTCTCTTATAA-T-TATTTACTAAATAATCCCT-ATA-AAATTACCAAAATGC-C
* * ** * * * *
509464 CATTTCTATTATATAATAAGAAATTGACATACGGCCCATTAGATTATTATGCCCCCATACCATAA
61 C-TTTCCATTATATGATAAGAAATTGACATGTGGCCAAATAGACTATTATGCCCTCATACCATAA
509529 TTATG
125 TTATG
* * * * * * *
509534 AAAATATCACTT-TTTTGATAATTATTAAATAAATAATCCCTAGAAAATTATCAAAATGCCCTTT
1 AAAATACCCCTTCTCTT-ATAATTATTTACTAAATAATCCCTATAAAATTACCAAAATGCCCTTT
* * * * *
509598 CCATTATATGATAAGAAATTCACAAGTGGCCAAA-ATGA-TAATATGCCTTCATATCATAATTAT
65 CCATTATATGATAAGAAATTGACATGTGGCCAAATA-GACTATTATGCCCTCATACCATAATTAT
509661 G
129 G
** * * * * * **
509662 AAAATAATCATTCTCTTATAATTA-TTACTAAATAATCCATTATTAAATTAACAAAATACATTTT
1 AAAATACCCCTTCTCTTATAATTATTTACTAAATAATCC-CTATAAAATTACCAAAATGCCCTTT
* *
509726 CCATTATATGATAAGAAATTAACATATGGCCAAAT-GAACTATTATGCCCTCATACCATAATTAT
65 CCATTATATGATAAGAAATTGACATGTGGCCAAATAG-ACTATTATGCCCTCATACCATAATTAT
509790 G
129 G
* * * * *
509791 AAAATGCCCCTTCTCTTATAAATATTTTCTAAATAATCTCCTACAAAATTACCAAAGTGCCCTTT
1 AAAATACCCCTTCTCTTATAATTATTTACTAAATAATC-CCTATAAAATTACCAAAATGCCCTTT
* ** ** ** * * * *
509856 GCATTATATGATAAGAAATTTTCATGCAGCCATGTTGTCTAATATGCCCTTACATA--ATAATAA
65 CCATTATATGATAAGAAATTGACATGTGGCCAAATAGACTATTATGCCC-T-CATACCATAATTA
509919 TG
128 TG
* * * * *
509921 -AATTGCCCCTTCTCTTATAATTATTTACTAAATAATTCACTATGAAATTACCAAAATACCCTTT
1 AAAATACCCCTTCTCTTATAATTATTTACTAAATAA-TCCCTATAAAATTACCAAAATGCCCTTT
* * * * * * *
509985 TCATTACATGATAAGAAATTGACATGTGGCCAAATGGACTATTATTCCCTTATTCCAAAATTATG
65 CCATTATATGATAAGAAATTGACATGTGGCCAAATAGACTATTATGCCCTCATACCATAATTATG
* * * * * * *
510050 AAAATAACCCTTCTTTTATAATT-GTTACCAAATATTCCCATATTAAATTACCAAAATACCCTTT
1 AAAATACCCCTTCTCTTATAATTATTTACTAAATAATCCC-TATAAAATTACCAAAATGCCCTTT
* * * * * *
510114 CCATTATATGATAAGAAGTTGACATGTGACCCAATGGGCTATTATGCCCTCATACTATAATTATG
65 CCATTATATGATAAGAAATTGACATGTGGCCAAATAGACTATTATGCCCTCATACCATAATTATG
* *
510179 AAAATACCCCTTCTCTTATAATTAGTTACAAAATAATCCCCTATGAAAA-TACCAAAAT
1 AAAATACCCCTTCTCTTATAATTATTTACTAAATAAT-CCCTAT-AAAATTACCAAAAT
510237 ACATTTTTTG
Statistics
Matches: 864, Mismatches: 177, Indels: 95
0.76 0.16 0.08
Matches are distributed among these distances:
122 1 0.00
123 34 0.04
124 53 0.06
126 1 0.00
127 16 0.02
128 104 0.12
129 391 0.45
130 237 0.27
131 23 0.03
132 4 0.00
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (129 bp):
AAAATACCCCTTCTCTTATAATTATTTACTAAATAATCCCTATAAAATTACCAAAATGCCCTTTC
CATTATATGATAAGAAATTGACATGTGGCCAAATAGACTATTATGCCCTCATACCATAATTATG
Found at i:510018 original size:259 final size:257
Alignment explanation
Indices: 508987--510243 Score: 823
Period size: 259 Copynumber: 4.9 Consensus size: 257
508977 TGCCAAGTGT
* * * * * ** * * *
508987 CCAAATGAACTATTATACCCTTATA-TAAAAATACAAAAAT-ACCACTTCTCTTATCATTATTTA
1 CCAAATGAACTATTATGCCCTCATACCATAATTATGAAAATAACC-CTTCTTTTATAAATATTTA
* ** * * * **
509050 CTAAATAATACACTA-AAAATTATGAAAATTCCCTTTCCATTATATGATAAGAAATTGAAATGTG
65 CTAAATAAT-CCCTACAAAATTACCAAAATGCCCTTTCCATTATATGATAAGAAATTCACATGCA
* * * * * * *
509114 GCCAAAT-TGACTATTAT--AC-AC-T-CAT-ATTACGAAAATACCACTTTTCTTATAATTGTGT
129 GCC--ATGTG-CTAATATGCCCTTCATACATAATTATGAAAATACCCCTTCTCTTATAATTAT-T
* * * * * * *
509172 ACCAAATAATCTC-CTCA-GTAGTTACCAAATTACCCTTTT-CATTATATGATAAGAAATTGACA
190 ACTAAATAATC-CACT-ATGAAATTACCAAAATACCATTTTCCATTACATGATAAGAAATTAACA
* *
509234 TGTAG
253 TATGG
* * * * ** * * * * **
509239 CTAAATGGATTATTGTGCTTTTATATCATAATTAAT-AAAATACCCCTTTTTTTATACTTATTTA
1 CCAAATGAACTATTATGCCCTCATACCATAATT-ATGAAAATAACCCTTCTTTTATAAATATTTA
* ** *
509303 CTAAATAATCCCTTA-AAAATTATCAAAATGCCC-TTCTCATTATATGATAA-AAAGTTGGCTTG
65 CTAAATAATCCC-TACAAAATTACCAAAATGCCCTTTC-CATTATATGATAAGAAA-TTCACATG
** *** * * ** * *
509365 TGGCCAAATAAACTACTATGCTC-TCATACCATAATTACAAAAATATCCCTTCTTTTATAACTAT
127 CAGCC--ATGTGCTAATATGCCCTTCATA-CATAATTATGAAAATACCCCTTCTCTTATAA-T-T
* * * * ** * * * *
509429 ATT-TTAAATAAT-CTCTCAAGAAATTACTAAAGCACCA-TTTCTATTATATAATAAGAAATTGA
187 ATTACTAAATAATCCACT-ATGAAATTACCAAAATACCATTTTCCATTACATGATAAGAAATTAA
*
509491 CATACGG
251 CATATGG
* * * * * * * *
509498 CC-CATTAGATTATTATGCCCCCATACCATAATTATGAAAATATCACTT-TTTTGATAATTATTA
1 CCAAATGA-ACTATTATGCCCTCATACCATAATTATGAAAATAACCCTTCTTTT-ATAAATATTT
* * * * **
509561 AATAAATAATCCCTAGAAAATTATCAAAATGCCCTTTCCATTATATGATAAGAAATTCACAAGTG
64 ACTAAATAATCCCTACAAAATTACCAAAATGCCCTTTCCATTATATGATAAGAAATTCACATGCA
** * ** *
509626 GCCAAAATGATAATATG-CCTTCATATCATAATTATGAAAATAATCATTCTCTTATAATTATTAC
129 GCC-ATGTGCTAATATGCCCTTCATA-CATAATTATGAAAATACCCCTTCTCTTATAATTATTAC
* * * *
509690 TAAATAATCCATTATTAAATTAACAAAATA-CATTTTCCATTATATGATAAGAAATTAACATATG
192 TAAATAATCCACTATGAAATTACCAAAATACCATTTTCCATTACATGATAAGAAATTAACATATG
509754 G
257 G
** * *
509755 CCAAATGAACTATTATGCCCTCATACCATAATTATGAAAATGCCCCTTCTCTTATAAATATTTTC
1 CCAAATGAACTATTATGCCCTCATACCATAATTATGAAAATAACCCTTCTTTTATAAATATTTAC
* * **
509820 TAAATAATCTCCTACAAAATTACCAAAGTGCCCTTTGCATTATATGATAAGAAATTTTCATGCAG
66 TAAATAATC-CCTACAAAATTACCAAAATGCCCTTTCCATTATATGATAAGAAATTCACATGCAG
* * *
509885 CCATGTTGTCTAATATGCCCTTACATA-ATAATAATG-AATTGCCCCTTCTCTTATAATTATTTA
130 CCATG-TG-CTAATATGCCCTT-CATACATAATTATGAAAATACCCCTTCTCTTATAATTA-TTA
* * * *
509948 CTAAATAATTCACTATGAAATTACCAAAATACCCTTTT-CATTACATGATAAGAAATTGACATGT
191 CTAAATAATCCACTATGAAATTACCAAAATACCATTTTCCATTACATGATAAGAAATTAACATAT
510012 GG
256 GG
* * * * *
510014 CCAAATGGACTATTATTCCCTTATTCCAAAATTATGAAAATAACCCTTCTTTTAT-AAT-TGTTA
1 CCAAATGAACTATTATGCCCTCATACCATAATTATGAAAATAACCCTTCTTTTATAAATAT-TTA
* * ** * * * *
510077 CCAAATATTCCCATATTAAATTACCAAAATACCCTTTCCATTATATGATAAGAAGTTGACATGTG
65 CTAAATAATCCC-TACAAAATTACCAAAATGCCCTTTCCATTATATGATAAGAAATTCACATG-C
* * *
510142 ACCCAATGGGCTATTATGCCC-TCATACTATAATTATGAAAATACCCCTTCTCTTATAATTAGTT
128 AGCC-ATGTGCTAATATGCCCTTCATAC-ATAATTATGAAAATACCCCTTCTCTTATAATTA-TT
* * *
510206 ACAAAATAATCCCCTATGAAAATACCAAAATA-CATTTT
190 ACTAAATAATCCACTATGAAATTACCAAAATACCATTTT
510244 TTGTTAATGG
Statistics
Matches: 800, Mismatches: 161, Indels: 82
0.77 0.15 0.08
Matches are distributed among these distances:
252 26 0.03
253 84 0.10
254 3 0.00
255 2 0.00
256 11 0.01
257 109 0.14
258 213 0.27
259 326 0.41
260 20 0.03
261 6 0.01
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (257 bp):
CCAAATGAACTATTATGCCCTCATACCATAATTATGAAAATAACCCTTCTTTTATAAATATTTAC
TAAATAATCCCTACAAAATTACCAAAATGCCCTTTCCATTATATGATAAGAAATTCACATGCAGC
CATGTGCTAATATGCCCTTCATACATAATTATGAAAATACCCCTTCTCTTATAATTATTACTAAA
TAATCCACTATGAAATTACCAAAATACCATTTTCCATTACATGATAAGAAATTAACATATGG
Found at i:510698 original size:128 final size:127
Alignment explanation
Indices: 510353--510737 Score: 391
Period size: 130 Copynumber: 3.0 Consensus size: 127
510343 GCATTTATAC
* * * *
510353 CATAATTATGAAAATA-TCTTTTTTTGATAATTATTTACTATATAATCCCTTATGAAATTACAAA
1 CATAATTATGAAAATACCCCTTTCTT-ATAATTATTTACTAAATAATCCCTTATGAAATTACAAA
* * * *
510417 AATACCTTTTCCATTATAAT-ATAAGAAAATCACATGTTGCCAAA-ATGACTTTTATGCCTTCAT
65 AATACC-TTTCCATTAT-ATGATAAGAAATTCACATG-TGCCAAATA-GACTATTATTCCCTCAT
*
510480 AT
126 AA
* * * * * **
510482 CATAATTATTAAAATACACCCTCTCTTACAATTATTTACTGAATAATCCCTTACGAAATTATTAA
1 CATAATTATGAAAATAC-CCCTTTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACAAA
* * *
510547 AATACCATTTCCATTATAGGATAAGAAATTTACATGTGATCAAATAGACTATTATTCCCTCATAA
65 AATACC-TTTCCATTATATGATAAGAAATTCACATGTG-CCAAATAGACTATTATTCCCTCATAA
* * * * * *
510612 CATAATTATGAAAATACCCCTTTGTTATTATTA-TTACTAAATAATCCTTTATTAAATTACCAAT
1 CATAATTATGAAAATACCCCTTTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACAAAA
* * * *
510676 ATACCTCTTCTATTATATGATAAGAAGTTGACATATGGCCAAATAGACTATTATTCCCTCAT
66 ATACCT-TTCCATTATATGATAAGAAATTCACATGT-GCCAAATAGACTATTATTCCCTCAT
510738 GTGAAAATAC
Statistics
Matches: 211, Mismatches: 38, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
127 1 0.00
128 76 0.36
129 31 0.15
130 97 0.46
131 6 0.03
ACGTcount: A:0.38, C:0.17, G:0.06, T:0.38
Consensus pattern (127 bp):
CATAATTATGAAAATACCCCTTTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACAAAA
ATACCTTTCCATTATATGATAAGAAATTCACATGTGCCAAATAGACTATTATTCCCTCATAA
Found at i:511253 original size:131 final size:126
Alignment explanation
Indices: 510900--511347 Score: 480
Period size: 131 Copynumber: 3.5 Consensus size: 126
510890 TCTAACTGTG
* * *
510900 CTATTTTGCCCTCATAACATAATTAC--AAAAATACACATTTTCTTATAATTATTTACTAAATAA
1 CTATTATGCCCTCATACCATAATTACGAAAAAATA-A-ATTCTCTTATAATTATTTACTAAATAA
* ** * *
510963 TCTCGCAAGAAATTACCAAAATGCC-TTTATACA--ATAAGAAATTGATGTGAGGCCATATGGA
64 TC-CGCAAGAAATTACCAAAATGCCTTTTATATATGATAAGAAATTGACATGTGGCCAAATGGA
* * * *
511024 CTATTAAGCCCTCATACCATAATTATG--AAAAT-ACTCCTCTTATAATTATTTACTAAATAATC
1 CTATTATGCCCTCATACCATAATTACGAAAAAATAAATTCTCTTATAATTATTTACTAAATAAT-
* *
511086 CCGCAAGAAATTACTAAAATGCCTTTTCTAATATATGATGAGAAATTGACATGTGGCCAAATGGA
65 CCGCAAGAAATTACCAAAATGCC-TTT-T-ATATATGATAAGAAATTGACATGTGGCCAAATGGA
511151 CTATTATGCCCTCATACCATAATTACGAAAAATATAAATTCTCTTATAATTATTTACTAAATAAT
1 CTATTATGCCCTCATACCATAATTACGAAAAA-ATAAATTCTCTTATAATTATTTACTAAATAAT
** * * * *
511216 CCATTAAAAAATTACCAAAATGCCCTTATTATTATATGATAAGAAATTTACATGTGACCAAATTG
65 CC-GCAAGAAATTACCAAAATG-CCTT-TTA-TATATGATAAGAAATTGACATGTGGCCAAATGG
511281 A
126 A
* * * * *** *
511282 CTAATATGCCCTCATACAATAGTTAAGAAAAAATCCCTTCTCTTATAATTATTTACTAAAAAATC
1 CTATTATGCCCTCATACCATAATTACGAAAAAATAAATTCTCTTATAATTATTTACTAAATAATC
511347 C
66 C
511348 TTATAAATTT
Statistics
Matches: 274, Mismatches: 34, Indels: 26
0.82 0.10 0.08
Matches are distributed among these distances:
121 46 0.17
122 2 0.01
123 2 0.01
124 28 0.10
125 4 0.01
127 48 0.18
129 3 0.01
130 35 0.13
131 103 0.38
132 3 0.01
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.33
Consensus pattern (126 bp):
CTATTATGCCCTCATACCATAATTACGAAAAAATAAATTCTCTTATAATTATTTACTAAATAATC
CGCAAGAAATTACCAAAATGCCTTTTATATATGATAAGAAATTGACATGTGGCCAAATGGA
Found at i:511677 original size:130 final size:130
Alignment explanation
Indices: 511456--511705 Score: 326
Period size: 130 Copynumber: 1.9 Consensus size: 130
511446 GTCAGGTGTC
* * * * * * * *
511456 CAAATGCACTATTATGTCTTTATATTAGAATTATGAAAATACCCCTTCTTTTATAATTATTTACT
1 CAAATGAACTATTATGCCTTCATACTAGAATTACGAAAATACCCATTCTCTTATAATTATTAACT
* * *
511521 AAATAATCTACTAAAAATTTAGCAAAATGCCCTTCTA-ATTATATGATAACAAATTGACTTGAGG
66 AAATAATCCACTAAAAATTTACCAAAATGCCCTT-TATATTATATGATAAAAAATTGACTTGAGG
511585 T
130 T
* *
511586 CAAATGAACTATTATGCCTTCATACTATAATTACGAAAATATCCATTCTCTTATAATTATTAACT
1 CAAATGAACTATTATGCCTTCATACTAGAATTACGAAAATACCCATTCTCTTATAATTATTAACT
*
511651 AAATAATCC-CATAATAAA-TTACCAAAATGCTCTTTATATTATATGATAAAAAATT
66 AAATAATCCAC-TAA-AAATTTACCAAAATGCCCTTTATATTATATGATAAAAAATT
511706 TACAAGTGGC
Statistics
Matches: 103, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
129 3 0.03
130 97 0.94
131 3 0.03
ACGTcount: A:0.41, C:0.15, G:0.06, T:0.38
Consensus pattern (130 bp):
CAAATGAACTATTATGCCTTCATACTAGAATTACGAAAATACCCATTCTCTTATAATTATTAACT
AAATAATCCACTAAAAATTTACCAAAATGCCCTTTATATTATATGATAAAAAATTGACTTGAGGT
Found at i:542561 original size:45 final size:45
Alignment explanation
Indices: 542480--542579 Score: 119
Period size: 45 Copynumber: 2.2 Consensus size: 45
542470 CACCATGTGC
* ** *
542480 CAATAGTGGTCGAGGCAAATGCTTGTACCAAGGGCTAGCTTATGT
1 CAATGGTGGTCGAGGCAAATGCCCGTACCAAAGGCTAGCTTATGT
* **
542525 CAATGGTGGTCGAGGCAAGTGCCCGTATGAAAGGCTAGCTTATGT
1 CAATGGTGGTCGAGGCAAATGCCCGTACCAAAGGCTAGCTTATGT
* *
542570 CGATGATGGT
1 CAATGGTGGT
542580 TAAGGCATGT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (45 bp):
CAATGGTGGTCGAGGCAAATGCCCGTACCAAAGGCTAGCTTATGT
Found at i:546007 original size:19 final size:19
Alignment explanation
Indices: 545979--546024 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
545969 TGAACGTAGG
*
545979 TTTTTCTTTTTC-AATTTT
1 TTTTTATTTTTCTAATTTT
545997 TTTTT-TATTTTCTAATTTT
1 TTTTTAT-TTTTCTAATTTT
546016 TTTTTATTT
1 TTTTTATTT
546025 ATTTATTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 1 0.04
18 10 0.40
19 13 0.52
20 1 0.04
ACGTcount: A:0.13, C:0.07, G:0.00, T:0.80
Consensus pattern (19 bp):
TTTTTATTTTTCTAATTTT
Found at i:556276 original size:61 final size:62
Alignment explanation
Indices: 556182--556302 Score: 181
Period size: 61 Copynumber: 2.0 Consensus size: 62
556172 TTTTCCAATA
* * * * *
556182 AAAAAAAAAAGAAAAAGGGTGAAATTGAAAACCCGAAAGGGCAGTTTTAACCA-AAAAAATT
1 AAAAAAAAAAGAAAAAAGGTCAAATTGAAAACCCAAAAGGGCAATTTAAACCACAAAAAATT
*
556243 AAAAAAAAAAGAAAAAAGGTCAAATTGAAAACCCAAAAGGGTAATTTAAACCACAAAAAA
1 AAAAAAAAAAGAAAAAAGGTCAAATTGAAAACCCAAAAGGGCAATTTAAACCACAAAAAA
556303 AGGGGCGATT
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
61 47 0.89
62 6 0.11
ACGTcount: A:0.61, C:0.11, G:0.15, T:0.13
Consensus pattern (62 bp):
AAAAAAAAAAGAAAAAAGGTCAAATTGAAAACCCAAAAGGGCAATTTAAACCACAAAAAATT
Found at i:556316 original size:24 final size:24
Alignment explanation
Indices: 556286--556331 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
556276 CAAAAGGGTA
556286 ATTTAAACCACAAAAAAAGGGGCG
1 ATTTAAACCACAAAAAAAGGGGCG
*
556310 ATTTAAACCACACAAAAAGGGG
1 ATTTAAACCACAAAAAAAGGGG
556332 GAGAAGTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.50, C:0.17, G:0.20, T:0.13
Consensus pattern (24 bp):
ATTTAAACCACAAAAAAAGGGGCG
Found at i:556341 original size:26 final size:24
Alignment explanation
Indices: 556288--556342 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
556278 AAAGGGTAAT
* *
556288 TTAAACCACAAAAAAAGGGGCGAT
1 TTAAACCACAAAAAAAGGGGAGAG
*
556312 TTAAACCACACAAAAAGGGGGAGAAG
1 TTAAACCACA-AAAAAAGGGGAG-AG
556338 TTAAA
1 TTAAA
556343 GTCGAAAACC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 10 0.38
25 10 0.38
26 6 0.23
ACGTcount: A:0.51, C:0.15, G:0.22, T:0.13
Consensus pattern (24 bp):
TTAAACCACAAAAAAAGGGGAGAG
Found at i:557769 original size:233 final size:231
Alignment explanation
Indices: 557132--558955 Score: 1384
Period size: 233 Copynumber: 7.8 Consensus size: 231
557122 TACATTTACA
* * * * * * * *
557132 TCATCTC-ACTCACTTGATCTTAGCTTAGTCTAGATCATTTTCTTATGATTCGTGGCTTAATCCA
1 TCATCTCGA-TCACCTGATCTTGGCTCAGTCCAGATCA-TTTC-T-TGATTCATGGTTTTATCCC
* * * * * **
557196 AATCATTTATTTTTTACCTTGACTCGATCCTGGTCACCTCATTTGACTCGTGGTTTCATCCCAGT
62 GATCATTTA-TTTTGACCTTAACTCGATCCTGGTCACTTCATTTGACTCATGGTTTCATCCTGGT
* * * * * * *
557261 CACTTGATCTTGGCTCAGTCTAGATCATTATCTCGATCCGTGGTTTAAT-CTCGATCATTTATTT
126 CACCTGATCTTGGCTCAGTCTAAATCATTTTCTTGATTCGTGGTTTCATCCT-GATCATCTATTT
* * *
557325 ATGACTTTAACTCGATCTTGGTCACTTCATTTGACTCTTGGTT
190 -TGACCTTAACTCGATCCTGGTCACTTCATTTGACTCATGGTT
* * * * * ** *
557368 TCACCCCGATCACCTGATCTTAGCTCAGTCTAGATCATTCTTCTTTATTTGTGGTTTTATCTCGA
1 TCATCTCGATCACCTGATCTTGGCTCAGTCCAGATCA-T-TTCTTGATTCATGGTTTTATCCCGA
* * * * ** * *
557433 TCA-TCATTTTTGACCTCAACTCGATCTTGGTCACTTTATTTTGACTTGTGGTTTTATCCCT-AT
64 TCATTTA-TTTTGACCTTAACTCGATCCTGGTCACTTCA-TTTGACTCATGGTTTCAT-CCTGGT
* * * *
557496 CATCTGATCTTGGCTTAGTCTAGAT--TGTTTCTTATGATTCATGGTTTCATCCTGATCATCTAT
126 CACCTGATCTTGGCTCAGTCTAAATCAT-TTTC-T-TGATTCGTGGTTTCATCCTGATCATCTAT
* * * * * **
557559 TTTTACCTTGACTTGACCCTGGTTACTTCATTTGACTCATGACT
188 TTTGACCTTAACTCGATCCTGGTCACTTCATTTGACTCATGGTT
* * * * * * **
557603 TCATTTCGATCACTTGGTCTTGGCTCAGTCCAAATCATTTCTTGATCCATGGTTTTGTATCGATC
1 TCATCTCGATCACCTGATCTTGGCTCAGTCCAGATCATTTCTTGATTCATGGTTTTATCCCGATC
* * *
557668 ATTTATTTGTGACCTTAACTCGATCTTAGTCACTTCATTTGACTCATGGCTTCATCCTGGTCACC
66 ATTTATTT-TGACCTTAACTCGATCCTGGTCACTTCATTTGACTCATGGTTTCATCCTGGTCACC
* * * * *
557733 TGGTCTTGGCTCAGTCCAAATCATTCTTCTTGATTCATGGTTTCATCTTGAACATCTATTTTGAC
130 TGATCTTGGCTCAGTCTAAATCATT-TTCTTGATTCGTGGTTTCATCCTGATCATCTATTTTGAC
* * * *
557798 ATTAACTCGATCCTAGTCACTTTATTTTGACTCATGATT
194 CTTAACTCGATCCTGGTCACTTCA-TTTGACTCATGGTT
* * * * * *
557837 TCATC-CCAGTCACCAGATCCTAGCTCAGTCCAGATCATTTCTTATGATTCATGGTTTCATCCCA
1 TCATCTCGA-TCACCTGATCTTGGCTCAGTCCAGATCATTTC-T-TGATTCATGGTTTTATCCCG
* ** * ** *
557901 ATCATCTATTTTGACCTCGACTCGGTATTGGTCACTTCATTTGACTCATTGTTTCATCCTGGTCA
63 ATCATTTATTTTGACCTTAACTCGATCCTGGTCACTTCATTTGACTCATGGTTTCATCCTGGTCA
* * * * * *
557966 CTTGGTCTTGGCTCAGTCCAAATTA-TTTCTTGATTTGTGGTTTCAT-CTCGATCATTTATTTGT
128 CCTGATCTTGGCTCAGTCTAAATCATTTTCTTGATTCGTGGTTTCATCCT-GATCATCTATTT-T
* *
558029 GACCCTGACTCGATCCTGGTCACTTCATTTGACTCATGGTT
191 GACCTTAACTCGATCCTGGTCACTTCATTTGACTCATGGTT
* * * * ** **
558070 TCGTTTCGATCACCTGATCTTGGCTTAGTCTAGATCATTTCTTATGATTTGTGGTTCCATCCCGA
1 TCATCTCGATCACCTGATCTTGGCTCAGTCCAGATCATTTC-T-TGATTCATGGTTTTATCCCGA
* * ** * * * *
558135 TCATTTATTTTGACC-AAGACTCGGTCCTGGTTGCTTTATTTGACTCCTAGTTTCAT-CTCCGTC
64 TCATTTATTTTGACCTTA-ACTCGATCCTGGTCACTTCATTTGACTCATGGTTTCATCCT-GGTC
* * * * * *
558198 A-TTGAGTCTTGGCTCAGTCTAGATCA-TTTCTTGATCCGTGATTTGAT-CTCGATCATTTATTT
127 ACCTGA-TCTTGGCTCAGTCTAAATCATTTTCTTGATTCGTGGTTTCATCCT-GATCATCTATTT
* * * * *
558260 GTCACCTTGACTTGGTCCCGGTCACTTCATTTGACTCATGGTT
190 -TGACCTTAACTCGATCCTGGTCACTTCATTTGACTCATGGTT
* * * *
558303 TCATCTCGATCACCTAATCTTGGCTCAGTCCAGATCAGTCTTCTTGATTCATGGTTATGTCCCAA
1 TCATCTCGATCACCTGATCTTGGCTCAGTCCAGATCA-T-TTCTTGATTCATGGTTTTATCCCGA
* * * * * * * * *
558368 TCATCTATTTTGACCCTGACTCGATCCTAGCCACTTTATTTTGACTCATGGTCTT-GTCTTGATC
64 TCATTTATTTTGACCTTAACTCGATCCTGGTCACTTCA-TTTGACTCATGGT-TTCATCCTGGTC
* * * *
558432 ACCTGATCTTGGCTCAGTCTAGATCA-TTTCTTATGATTCGTAGTTCCATCCCGATCATCTATTT
127 ACCTGATCTTGGCTCAGTCTAAATCATTTTC-T-TGATTCGTGGTTTCATCCTGATCATCTATTT
* * * **
558496 TAACCTCAACTC-AGTCCTGGTCACTTTATTTGACTTGTGGTT
190 TGACCTTAACTCGA-TCCTGGTCACTTCATTTGACTCATGGTT
* * * * * * * *
558538 TCATCTCGATCACTTGGTCTTAGCTAAATCCAAATCATTTCTTAATTCATGGTTTCATCCCGATC
1 TCATCTCGATCACCTGATCTTGGCTCAGTCCAGATCATTTCTTGATTCATGGTTTTATCCCGATC
* * * ** *
558603 ATTTATTTGTGACCTTGACTCGATCCTGGTCACTTTATTTGACTCGTGGTTTTGTCTTGGTCACC
66 ATTTATTT-TGACCTTAACTCGATCCTGGTCACTTCATTTGACTCATGGTTTCATCCTGGTCACC
* * * * * * * ** *
558668 TGATCTTCGCTTAGTCCATATCATTATTCTTGATTCATAGTTCCATCCCAAACATCTATTTTGAC
130 TGATCTTGGCTCAGTCTAAATCATT-TTCTTGATTCGTGGTTTCATCCTGATCATCTATTTTGAC
* * * *
558733 CTCAACTCGATCCTAGTCACTTTATTTTGACTCGTGGTT
194 CTTAACTCGATCCTGGTCACTTCA-TTTGACTCATGGTT
** * * * * *
558772 T-GGCCCGATCACCTGATCTTGGCTTAGTCCAGATCATTTCCTATGATTCGTGGTTCTATCCTGA
1 TCATCTCGATCACCTGATCTTGGCTCAGTCCAGATCATTT-CT-TGATTCATGGTTTTATCCCGA
* * * * ** * * *
558836 TCATCTATTTTGACCTCAACTCGATCCTAGTCACTTCATTTGACTCGTGGTTTTGT-TTCGATGA
64 TCATTTATTTTGACCTTAACTCGATCCTGGTCACTTCATTTGACTCATGGTTTCATCCT-GGTCA
* * * * *
558900 CTTGGTCTTGGCTTAGTCTAGATCA-TTTCTTATGATTCGTGGTTTCATCCTAATCA
128 CCTGATCTTGGCTCAGTCTAAATCATTTTC-T-TGATTCGTGGTTTCATCCTGATCA
558956 ATATTTTTGA
Statistics
Matches: 1290, Mismatches: 252, Indels: 94
0.79 0.15 0.06
Matches are distributed among these distances:
232 14 0.01
233 571 0.44
234 300 0.23
235 293 0.23
236 105 0.08
237 7 0.01
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.42
Consensus pattern (231 bp):
TCATCTCGATCACCTGATCTTGGCTCAGTCCAGATCATTTCTTGATTCATGGTTTTATCCCGATC
ATTTATTTTGACCTTAACTCGATCCTGGTCACTTCATTTGACTCATGGTTTCATCCTGGTCACCT
GATCTTGGCTCAGTCTAAATCATTTTCTTGATTCGTGGTTTCATCCTGATCATCTATTTTGACCT
TAACTCGATCCTGGTCACTTCATTTGACTCATGGTT
Found at i:557880 original size:351 final size:348
Alignment explanation
Indices: 557141--558998 Score: 1589
Period size: 351 Copynumber: 5.3 Consensus size: 348
557131 ATCATCTCAC
* * * * * **
557141 TCACTTGATCTTAGCTTAGTCTAGATCATTTTCTTATGATTCGTGGCTTAATCCAAATCATTTAT
1 TCACCTGATCTTAGCTCAGTCTAGATCA-TTTCTTATGATTCATGGTTTCATCCCGATCATTTA-
* * * * *
557206 TTTTTACCTTGACTCGATCCTGGTCACCTCATTTGACTCGTGGTTTCA-TCCCAGTCACTTGATC
64 TTTTGACCTTGACTCGATCCTGGTCACTTCATTTGACTCATGGTTTCATTTCGA-TCACTTGATC
* * * * * * *
557270 TTGGCTCAGTCTAGATCATTATCTCGATCCGTGGTTTAATCTCGATCATTTATTTATGACTTTAA
128 TTGGCTCAGTCCAAATCATT-TCTTGATTCATGGTTTCATCTCGATCATTTATTT-TGACCTTAA
* * * * ** * *
557335 CTCGATCTTGGTCACTTCATTTGACTCTTGGTTTCACCCCGATCACCTGATCTTAGCTCAGTCTA
191 CTCGATCCTAGTCACTTCATTTGACTCATGGCTTCGTCCTGATCACCTGATCTTGGCTCAGTCTA
* * * * *
557400 GATCATTCTTCTTTATTTGTGGTTTTATCTCGATCATC-ATTTTTGACCTCAACTCGATCTTGGT
256 GATCATTCTTCTTGATTCGTGGTTTCATCCCGATCATCTA-TTTTGACCTCAACTCGATCCTGGT
* * * *
557464 CACTTTATTTTGACTTGTGGTTTTATCCCTA
320 CACTTTA-TTTGACTCGTGATTTCATCCC-G
* * * ** * *
557495 TCATCTGATCTTGGCTTAGTCTAGATTGTTTCTTATGATTCATGGTTTCATCCTGATCATCTATT
1 TCACCTGATCTTAGCTCAGTCTAGATCATTTCTTATGATTCATGGTTTCATCCCGATCATTTATT
* * * * ** *
557560 TTTACCTTGACTTGACCCTGGTTACTTCATTTGACTCATGACTTCATTTCGATCACTTGGTCTTG
66 TTGACCTTGACTCGATCCTGGTCACTTCATTTGACTCATGGTTTCATTTCGATCACTTGATCTTG
* ** *
557625 GCTCAGTCCAAATCATTTCTTGATCCATGGTTTTGTATCGATCATTTATTTGTGACCTTAACTCG
131 GCTCAGTCCAAATCATTTCTTGATTCATGGTTTCATCTCGATCATTTATTT-TGACCTTAACTCG
* * * * * *
557690 ATCTTAGTCACTTCATTTGACTCATGGCTTCATCCTGGTCACCTGGTCTTGGCTCAGTCCAAATC
195 ATCCTAGTCACTTCATTTGACTCATGGCTTCGTCCTGATCACCTGATCTTGGCTCAGTCTAGATC
* ** * * * *
557755 ATTCTTCTTGATTCATGGTTTCATCTTGAACATCTATTTTGACATTAACTCGATCCTAGTCACTT
260 ATTCTTCTTGATTCGTGGTTTCATCCCGATCATCTATTTTGACCTCAACTCGATCCTGGTCACTT
*
557820 TATTTTGACTCATGATTTCATCCCAG
325 TA-TTTGACTCGTGATTTCATCCC-G
* * * * *
557846 TCACCAGATCCTAGCTCAGTCCAGATCATTTCTTATGATTCATGGTTTCATCCCAATCATCTATT
1 TCACCTGATCTTAGCTCAGTCTAGATCATTTCTTATGATTCATGGTTTCATCCCGATCATTTATT
* * ** * * * *
557911 TTGACCTCGACTCGGTATTGGTCACTTCATTTGACTCATTGTTTCA-TCCTGGTCACTTGGTCTT
66 TTGACCTTGACTCGATCCTGGTCACTTCATTTGACTCATGGTTTCATTTC-GATCACTTGATCTT
* ** * *
557975 GGCTCAGTCCAAATTATTTCTTGATTTGTGGTTTCATCTCGATCATTTATTTGTGACCCTGACTC
130 GGCTCAGTCCAAATCATTTCTTGATTCATGGTTTCATCTCGATCATTTATTT-TGACCTTAACTC
* * * *
558040 GATCCTGGTCACTTCATTTGACTCATGGTTTCGT-TTCGATCACCTGATCTTGGCTTAGTCTAGA
194 GATCCTAGTCACTTCATTTGACTCATGGCTTCGTCCT-GATCACCTGATCTTGGCTCAGTCTAGA
* * * * * * *
558104 TCATTTCTT-ATGATTTGTGGTTCCATCCCGATCATTTATTTTGACC-AAGACTCGGTCCTGGTT
258 TCA-TTCTTCTTGATTCGTGGTTTCATCCCGATCATCTATTTTGACCTCA-ACTCGATCCTGGTC
* *
558167 GCTTTATTTGACTCCT-AGTTTCATCTCCG
321 ACTTTATTTGACTCGTGA-TTTCATC-CCG
* * * * * * *
558196 TCA-TTGAGTCTTGGCTCAGTCTAGATCATTTC-T-TGATCCGTGATTTGATCTCGATCATTTAT
1 TCACCTGA-TCTTAGCTCAGTCTAGATCATTTCTTATGATTCATGGTTTCATCCCGATCATTTAT
* * * * * * *
558258 TTGTCACCTTGACTTGGTCCCGGTCACTTCATTTGACTCATGGTTTCATCTCGATCACCTAATCT
65 TT-TGACCTTGACTCGATCCTGGTCACTTCATTTGACTCATGGTTTCATTTCGATCACTTGATCT
* * * * * * *
558323 TGGCTCAGTCCAGATCAGTCTTCTTGATTCATGGTTAT-GTCCCAATCATCTATTTTGACCCTGA
129 TGGCTCAGTCCAAATCA-T-TTCTTGATTCATGGTT-TCATCTCGATCATTTATTTTGACCTTAA
* * *
558387 CTCGATCCTAGCCACTTTATTTTGACTCATGGTCTT-GTCTTGATCACCTGATCTTGGCTCAGTC
191 CTCGATCCTAGTCACTTCA-TTTGACTCATGG-CTTCGTCCTGATCACCTGATCTTGGCTCAGTC
* * * *
558451 TAGATCATTTCTT-ATGATTCGTAGTTCCATCCCGATCATCTATTTTAACCTCAACTC-AGTCCT
254 TAGATCA-TTCTTCTTGATTCGTGGTTTCATCCCGATCATCTATTTTGACCTCAACTCGA-TCCT
* * *
558514 GGTCACTTTATTTGACTTGTGGTTTCATCTCG
317 GGTCACTTTATTTGACTCGTGATTTCATCCCG
* * * * * *
558546 ATCACTTGGTCTTAGCTAAATCCAAATCATTTCTTA--ATTCATGGTTTCATCCCGATCATTTAT
1 -TCACCTGATCTTAGCTCAGTCTAGATCATTTCTTATGATTCATGGTTTCATCCCGATCATTTAT
* * ** * *
558609 TTGTGACCTTGACTCGATCCTGGTCACTTTATTTGACTCGTGGTTTTGTCTT-GGTCACCTGATC
65 TT-TGACCTTGACTCGATCCTGGTCACTTCATTTGACTCATGGTTTCAT-TTCGATCACTTGATC
* * * * * * * * * *
558673 TTCGCTTAGTCCATATCATTATTCTTGATTCATAGTTCCATCCCAAACATCTATTTTGACCTCAA
128 TTGGCTCAGTCCAAATCA-T-TTCTTGATTCATGGTTTCATCTCGATCATTTATTTTGACCTTAA
* * * * * * *
558738 CTCGATCCTAGTCACTTTATTTTGACTCGTGG-TTTGGCCCGATCACCTGATCTTGGCTTAGTCC
191 CTCGATCCTAGTCACTTCA-TTTGACTCATGGCTTCGTCCTGATCACCTGATCTTGGCTCAGTCT
* * *
558802 AGATCATT-TCCTATGATTCGTGG-TTCTATCCTGATCATCTATTTTGACCTCAACTCGATCCTA
255 AGATCATTCTTCT-TGATTCGTGGTTTC-ATCCCGATCATCTATTTTGACCTCAACTCGATCCTG
* * ** **
558865 GTCACTTCATTTGACTCGTGGTTTTGTTTCG
318 GTCACTTTATTTGACTCGTGATTTCATCCCG
* * * * * * ** *
558896 ATGACTTGGTCTTGGCTTAGTCTAGATCATTTCTTATGATTCGTGGTTTCATCCTAATCA-ATAT
1 -TCACCTGATCTTAGCTCAGTCTAGATCATTTCTTATGATTCATGGTTTCATCCCGATCATTTA-
* * * * * *
558960 TTTTGACTTTGACTTGGTCTTGATCGCTTCATTTGACTC
64 TTTTGACCTTGACTCGATCCTGGTCACTTCATTTGACTC
558999 GTGTTTTAAT
Statistics
Matches: 1237, Mismatches: 233, Indels: 71
0.80 0.15 0.05
Matches are distributed among these distances:
348 25 0.02
349 72 0.06
350 200 0.16
351 778 0.63
352 107 0.09
353 32 0.03
354 23 0.02
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.42
Consensus pattern (348 bp):
TCACCTGATCTTAGCTCAGTCTAGATCATTTCTTATGATTCATGGTTTCATCCCGATCATTTATT
TTGACCTTGACTCGATCCTGGTCACTTCATTTGACTCATGGTTTCATTTCGATCACTTGATCTTG
GCTCAGTCCAAATCATTTCTTGATTCATGGTTTCATCTCGATCATTTATTTTGACCTTAACTCGA
TCCTAGTCACTTCATTTGACTCATGGCTTCGTCCTGATCACCTGATCTTGGCTCAGTCTAGATCA
TTCTTCTTGATTCGTGGTTTCATCCCGATCATCTATTTTGACCTCAACTCGATCCTGGTCACTTT
ATTTGACTCGTGATTTCATCCCG
Found at i:558347 original size:584 final size:583
Alignment explanation
Indices: 557217--558881 Score: 1695
Period size: 584 Copynumber: 2.8 Consensus size: 583
557207 TTTTACCTTG
* * * * *
557217 ACTCGATCCTGGTCACCTCA-TTTGACTCGTGGTTTCATCCCAGTCACTTGATCTTGGCTCAGTC
1 ACTCGATCCTAGTCACTTTATTTTGACTCATGGTTTCATCCCAGTCACCTGATCTTGGCTCAGTC
* * * * * * * *
557281 TAGATCATTATC-T-CGATCCGTGGTTTAATCTCGATCATTTATTTATGACTTTAACTCGATCTT
66 TAGATCATT-TCTTATGATTCGTGGTTTCATCCCGATCATCTATTT-TGACCTCAACTCGGTCTT
* * * * * *
557344 GGTCACTTCATTTGACTCTTGGTTTCACCCCGATCACCTGATCTTAGCTCAGTCTAGATCATTCT
129 GGTCACTTCATTTGACTCTT-GTTTCATCCTGATCACTTGGTCTTAGCTCAGTCCAAATCA-T-T
* * * * * *
557409 TCTTTATTTGTGGTTTTATCTCGATCA-TCATTTTTGA-CCTCAACTCGATCTTGGTCACTTTAT
191 TCTTAATTTGTGGTTTCATCTCGATCATTTATTTGTGACCCT-GACTCGATCCTGGTCACTTTA-
* * ** * * **
557472 TTTGACTTGTGGTTTTATCCCTATCATCTGATCTTGGCTTAGTCTAGATTGTTTCTTATGATTCA
254 TTTGACTCGTGGTTTTGTTTCGATCACCTGATCTTGGCTTAGTCTAGATCATTTCTTATGATTCA
* * * ** *
557537 TGGTTTCATCCTGATCATCTATTTTTACCTTGACTTGACCCTGGTTACTTCATTTGACTCATGAC
319 TGGTTCCATCCCGATCATCTATTTTGACCAAGACTCGACCCTGGTTACTTCATTTGACTCATGAC
* *
557602 TTCATTTCGATCACTTGGTCTTGGCTCAGTCCAAATCATTTCTTGATCCATGGTTTTGTATCGAT
384 TTCATTCCGATCACTTGGTCTTGGCTCAGTCCAAATCATTTCTTGATCCATGGATTTGTATCGAT
* ** *
557667 CATTTATTTGTGACCTTAACTCGATCTTAGTCACTTCATTTGACTCATGGCTTCATCCTGGTCAC
449 CATTTATTTGTCACCTTAACTCGATCCCAGTCACTTCATTTGACTCATGGCTTCATCCTGATCAC
** * **
557732 CTGGTCTTGGCTCAGTCCAAATCATTCTTCTTGATTCATGGTT-TCATCTTGAA-CATCTATTTT
514 CTAATCTTGGCTCAGTCCAAATCAGTCTTCTTGATTCATGGTTATC-TC-CCAATCATCTATTTT
*
557795 GACATTA
577 GACACTA
* * * *
557802 ACTCGATCCTAGTCACTTTATTTTGACTCATGATTTCATCCCAGTCACCAGATCCTAGCTCAGTC
1 ACTCGATCCTAGTCACTTTATTTTGACTCATGGTTTCATCCCAGTCACCTGATCTTGGCTCAGTC
* * * * *
557867 CAGATCATTTCTTATGATTCATGGTTTCATCCCAATCATCTATTTTGACCTCGACTCGGTATTGG
66 TAGATCATTTCTTATGATTCGTGGTTTCATCCCGATCATCTATTTTGACCTCAACTCGGTCTTGG
* * *
557932 TCACTTCATTTGACTCATTGTTTCATCCTGGTCACTTGGTCTTGGCTCAGTCCAAATTATTTCTT
131 TCACTTCATTTGACTC-TTGTTTCATCCTGATCACTTGGTCTTAGCTCAGTCCAAATCATTTCTT
* *
557997 GATTTGTGGTTTCATCTCGATCATTTATTTGTGACCCTGACTCGATCCTGGTCACTTCATTTGAC
195 AATTTGTGGTTTCATCTCGATCATTTATTTGTGACCCTGACTCGATCCTGGTCACTTTATTTGAC
* * **
558062 TCATGGTTTCGTTTCGATCACCTGATCTTGGCTTAGTCTAGATCATTTCTTATGATTTGTGGTTC
260 TCGTGGTTTTGTTTCGATCACCTGATCTTGGCTTAGTCTAGATCATTTCTTATGATTCATGGTTC
* ** * * * *
558127 CATCCCGATCATTTATTTTGACCAAGACTCGGTCCTGGTTGCTTTATTTGACTCCT-AGTTTCAT
325 CATCCCGATCATCTATTTTGACCAAGACTCGACCCTGGTTACTTCATTTGACTCATGA-CTTCAT
* * * *
558191 CTCCG-TCA-TTGAGTCTTGGCTCAGTCTAGATCATTTCTTGATCCGT-GATTTGATCTCGATCA
389 -TCCGATCACTTG-GTCTTGGCTCAGTCCAAATCATTTCTTGATCCATGGATTTG-TATCGATCA
* * * * *
558253 TTTATTTGTCACCTTGACTTGGTCCCGGTCACTTCATTTGACTCATGGTTTCAT-CTCGATCACC
451 TTTATTTGTCACCTTAACTCGATCCCAGTCACTTCATTTGACTCATGGCTTCATCCT-GATCACC
* *
558317 TAATCTTGGCTCAGTCCAGATCAGTCTTCTTGATTCATGGTTATGTCCCAATCATCTATTTTGAC
515 TAATCTTGGCTCAGTCCAAATCAGTCTTCTTGATTCATGGTTATCTCCCAATCATCTATTTTGAC
* *
558382 CCTG
580 ACTA
* * **
558386 ACTCGATCCTAGCCACTTTATTTTGACTCATGGTCTT-GT-CTTGATCACCTGATCTTGGCTCAG
1 ACTCGATCCTAGTCACTTTATTTTGACTCATGGT-TTCATCCCAG-TCACCTGATCTTGGCTCAG
* * * * *
558449 TCTAGATCATTTCTTATGATTCGTAGTTCCATCCCGATCATCTATTTTAACCTCAACTCAGTCCT
64 TCTAGATCATTTCTTATGATTCGTGGTTTCATCCCGATCATCTATTTTGACCTCAACTCGGTCTT
* * *
558514 GGTCACTTTATTTGACT-TGTGGTTTCAT-CTCGATCACTTGGTCTTAGCTAAATCCAAATCATT
129 GGTCACTTCATTTGACTCT-T-GTTTCATCCT-GATCACTTGGTCTTAGCTCAGTCCAAATCATT
** * *
558577 TCTTAATTCATGGTTTCATCCCGATCATTTATTTGTGACCTTGACTCGATCCTGGTCACTTTATT
191 TCTTAATTTGTGGTTTCATCTCGATCATTTATTTGTGACCCTGACTCGATCCTGGTCACTTTATT
* * * *
558642 TGACTCGTGGTTTTGTCTT-GGTCACCTGATCTTCGCTTAGTCCATATCATTAT-TCT-TGATTC
256 TGACTCGTGGTTTTGT-TTCGATCACCTGATCTTGGCTTAGTCTAGATCATT-TCT-TATGATTC
* * * * * * * * *
558704 ATAGTTCCATCCCAAACATCTATTTTGACCTCA-ACTCGATCCTAGTCACTTTATTTTGACTCGT
318 ATGGTTCCATCCCGATCATCTATTTTGACC-AAGACTCGACCCTGGTTACTTCA-TTTGACTCAT
* **** * * * * * * *
558768 G-GTTTGGCCCGATCACCTGATCTTGGCTTAGTCCAGATCATTTCCTATGATTCGTGG--TTCTA
381 GACTTCATTCCGATCACTTGGTCTTGGCTCAGTCCAAATCATTT-CT-TGATCCATGGATTTGTA
* * * *
558830 TCCTGATCATCTATTT-TGACCTCAACTCGATCCTAGTCACTTCATTTGACTC
444 T-C-GATCATTTATTTGTCACCTTAACTCGATCCCAGTCACTTCATTTGACTC
558882 GTGGTTTTGT
Statistics
Matches: 893, Mismatches: 156, Indels: 62
0.80 0.14 0.06
Matches are distributed among these distances:
582 1 0.00
583 21 0.02
584 612 0.69
585 102 0.11
586 130 0.15
587 27 0.03
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.41
Consensus pattern (583 bp):
ACTCGATCCTAGTCACTTTATTTTGACTCATGGTTTCATCCCAGTCACCTGATCTTGGCTCAGTC
TAGATCATTTCTTATGATTCGTGGTTTCATCCCGATCATCTATTTTGACCTCAACTCGGTCTTGG
TCACTTCATTTGACTCTTGTTTCATCCTGATCACTTGGTCTTAGCTCAGTCCAAATCATTTCTTA
ATTTGTGGTTTCATCTCGATCATTTATTTGTGACCCTGACTCGATCCTGGTCACTTTATTTGACT
CGTGGTTTTGTTTCGATCACCTGATCTTGGCTTAGTCTAGATCATTTCTTATGATTCATGGTTCC
ATCCCGATCATCTATTTTGACCAAGACTCGACCCTGGTTACTTCATTTGACTCATGACTTCATTC
CGATCACTTGGTCTTGGCTCAGTCCAAATCATTTCTTGATCCATGGATTTGTATCGATCATTTAT
TTGTCACCTTAACTCGATCCCAGTCACTTCATTTGACTCATGGCTTCATCCTGATCACCTAATCT
TGGCTCAGTCCAAATCAGTCTTCTTGATTCATGGTTATCTCCCAATCATCTATTTTGACACTA
Found at i:558990 original size:117 final size:117
Alignment explanation
Indices: 557141--559005 Score: 1247
Period size: 117 Copynumber: 15.9 Consensus size: 117
557131 ATCATCTCAC
* * * * * * ** *
557141 TCACTTGATCTTAGCTTAGTCTAGATCATTTTCTTATGATTCGTGGCTTAATCCAAATCATTTAT
1 TCACCTGATCTTGGCTCAGTCCAGATCA-TTTCTTATGATTCGTGGTTTCATCCCGATCATCTA-
* * ** * *
557206 TTTTTACCTTGACTCGATCCTGGTCACCTCATTTGACTCGTGG-TTTCATCCCA
64 TTTTGACCTTGACTCGATCCTGGTCACTTCATTTGACTCGTGGTTTTGTTTCGA
* * * * * * *
557259 GTCACTTGATCTTGGCTCAGTCTAGATCATTATC-T-CGATCCGTGGTTTAATCTCGATCATTTA
1 -TCACCTGATCTTGGCTCAGTCCAGATCATT-TCTTATGATTCGTGGTTTCATCCCGATCATCTA
* * * * *****
557322 TTTATGACTTTAACTCGATCTTGGTCACTTCATTTGACTCTTGGTTTCACCCCGA
64 TTT-TGACCTTGACTCGATCCTGGTCACTTCATTTGACTCGTGGTTTTGTTTCGA
* * * * *
557377 TCACCTGATCTTAGCTCAGTCTAGATCATTCTTCTT-T-ATTTGTGGTTTTATCTCGATCATC-A
1 TCACCTGATCTTGGCTCAGTCCAGATCA-T-TTCTTATGATTCGTGGTTTCATCCCGATCATCTA
** * * * * ** *
557439 TTTTTGACCTCAACTCGATCTTGGTCACTTTATTTTGACTTGTGGTTTTATCCCTA
64 -TTTTGACCTTGACTCGATCCTGGTCACTTCA-TTTGACTCGTGGTTTTGTTTCGA
* * * ** * *
557495 TCATCTGATCTTGGCTTAGTCTAGATTGTTTCTTATGATTCATGGTTTCATCCTGATCATCTATT
1 TCACCTGATCTTGGCTCAGTCCAGATCATTTCTTATGATTCGTGGTTTCATCCCGATCATCTATT
* * * * * ** **
557560 TTTACCTTGACTTGACCCTGGTTACTTCATTTGACTCATGACTTCATTTCGA
66 TTGACCTTGACTCGATCCTGGTCACTTCATTTGACTCGTGGTTTTGTTTCGA
* * * * * ** ** *
557612 TCACTTGGTCTTGGCTCAGTCCAAATCATTTC-T-TGATCCATGGTTTTGTATCGATCATTTATT
1 TCACCTGATCTTGGCTCAGTCCAGATCATTTCTTATGATTCGTGGTTTCATCCCGATCATCTATT
* * * * * ** * *
557675 TGTGACCTTAACTCGATCTTAGTCACTTCATTTGACTCATGG-CTTCATCCTGG
66 T-TGACCTTGACTCGATCCTGGTCACTTCATTTGACTCGTGGTTTTGTTTC-GA
* * * * ** *
557728 TCACCTGGTCTTGGCTCAGTCCAAATCA-TTCTTCTTGATTCATGGTTTCATCTTGAACATCTAT
1 TCACCTGATCTTGGCTCAGTCCAGATCATTTCTT-ATGATTCGTGGTTTCATCCCGATCATCTAT
* * * * * * ** * *
557792 TTTGACATTAACTCGATCCTAGTCACTTTATTTTGACTCAT-GATTTCATCCCA
65 TTTGACCTTGACTCGATCCTGGTCACTTCA-TTTGACTCGTGGTTTTGTTTCGA
* * * * *
557845 GTCACCAGATCCTAGCTCAGTCCAGATCATTTCTTATGATTCATGGTTTCATCCCAATCATCTAT
1 -TCACCTGATCTTGGCTCAGTCCAGATCATTTCTTATGATTCGTGGTTTCATCCCGATCATCTAT
* * ** * * ** * *
557910 TTTGACCTCGACTCGGTATTGGTCACTTCATTTGACTCATTG-TTTCATCCTGG
65 TTTGACCTTGACTCGATCCTGGTCACTTCATTTGACTCGTGGTTTTGTTTC-GA
* * * * * * *
557963 TCACTTGGTCTTGGCTCAGTCCAAATTATTTC-T-TGATTTGTGGTTTCATCTCGATCATTTATT
1 TCACCTGATCTTGGCTCAGTCCAGATCATTTCTTATGATTCGTGGTTTCATCCCGATCATCTATT
* * *
558026 TGTGACCCTGACTCGATCCTGGTCACTTCATTTGACTCATGGTTTCGTTTCGA
66 T-TGACCTTGACTCGATCCTGGTCACTTCATTTGACTCGTGGTTTTGTTTCGA
* * * * *
558079 TCACCTGATCTTGGCTTAGTCTAGATCATTTCTTATGATTTGTGGTTCCATCCCGATCATTTATT
1 TCACCTGATCTTGGCTCAGTCCAGATCATTTCTTATGATTCGTGGTTTCATCCCGATCATCTATT
** * ** * * * ** *
558144 TTGACCAAGACTCGGTCCTGGTTGCTTTATTTGACTCCTAGTTTCATCTCCG-
66 TTGACCTTGACTCGATCCTGGTCACTTCATTTGACTCGTGGTTTTGT-TTCGA
* * * * * * *
558196 TCA-TTGAGTCTTGGCTCAGTCTAGATCATTTC-T-TGATCCGTGATTTGATCTCGATCATTTAT
1 TCACCTGA-TCTTGGCTCAGTCCAGATCATTTCTTATGATTCGTGGTTTCATCCCGATCATCTAT
* * * * * ** *
558258 TTGTCACCTTGACTTGGTCCCGGTCACTTCATTTGACTCATGGTTTCATCTCGA
65 TT-TGACCTTGACTCGATCCTGGTCACTTCATTTGACTCGTGGTTTTGTTTCGA
* * * *
558312 TCACCTAATCTTGGCTCAGTCCAGATCAGTCTTC-T-TGATTCATGGTTAT-GTCCCAATCATCT
1 TCACCTGATCTTGGCTCAGTCCAGATCA-T-TTCTTATGATTCGTGGTT-TCATCCCGATCATCT
* * * * * *
558374 ATTTTGACCCTGACTCGATCCTAGCCACTTTATTTTGACTCATGGTCTTGTCTT-GA
63 ATTTTGACCTTGACTCGATCCTGGTCACTTCA-TTTGACTCGTGGTTTTGT-TTCGA
* * *
558430 TCACCTGATCTTGGCTCAGTCTAGATCATTTCTTATGATTCGTAGTTCCATCCCGATCATCTATT
1 TCACCTGATCTTGGCTCAGTCCAGATCATTTCTTATGATTCGTGGTTTCATCCCGATCATCTATT
* ** * * ** *
558495 TTAACCTCAACTC-AGTCCTGGTCACTTTATTTGACTTGTGGTTTCATCTCGA
66 TTGACCTTGACTCGA-TCCTGGTCACTTCATTTGACTCGTGGTTTTGTTTCGA
* * * * * * * *
558547 TCACTTGGTCTTAGCTAAATCCAAATCATTTCTTA--ATTCATGGTTTCATCCCGATCATTTATT
1 TCACCTGATCTTGGCTCAGTCCAGATCATTTCTTATGATTCGTGGTTTCATCCCGATCATCTATT
* *
558610 TGTGACCTTGACTCGATCCTGGTCACTTTATTTGACTCGTGGTTTTGTCTT-GG
66 T-TGACCTTGACTCGATCCTGGTCACTTCATTTGACTCGTGGTTTTGT-TTCGA
* * * * * * * *
558663 TCACCTGATCTTCGCTTAGTCCATATCATTAT-TCT-TGATTCATAGTTCCATCCCAAACATCTA
1 TCACCTGATCTTGGCTCAGTCCAGATCATT-TCT-TATGATTCGTGGTTTCATCCCGATCATCTA
** * * ***
558726 TTTTGACCTCAACTCGATCCTAGTCACTTTATTTTGACTCGTGG-TTTGGCCCGA
64 TTTTGACCTTGACTCGATCCTGGTCACTTCA-TTTGACTCGTGGTTTTGTTTCGA
* * *
558780 TCACCTGATCTTGGCTTAGTCCAGATCATTTCCTATGATTCGTGG-TTCTATCCTGATCATCTAT
1 TCACCTGATCTTGGCTCAGTCCAGATCATTTCTTATGATTCGTGGTTTC-ATCCCGATCATCTAT
** *
558844 TTTGACCTCAACTCGATCCTAGTCACTTCATTTGACTCGTGGTTTTGTTTCGA
65 TTTGACCTTGACTCGATCCTGGTCACTTCATTTGACTCGTGGTTTTGTTTCGA
* * * * * ** *
558897 TGACTTGGTCTTGGCTTAGTCTAGATCATTTCTTATGATTCGTGGTTTCATCCTAATCA-ATATT
1 TCACCTGATCTTGGCTCAGTCCAGATCATTTCTTATGATTCGTGGTTTCATCCCGATCATCTA-T
* * * * * *
558961 TTTGACTTTGACTTGGTCTTGATCGCTTCATTTGACTCGT-GTTTT
65 TTTGACCTTGACTCGATCCTGGTCACTTCATTTGACTCGTGGTTTT
559006 AATCCCGGTC
Statistics
Matches: 1399, Mismatches: 291, Indels: 115
0.78 0.16 0.06
Matches are distributed among these distances:
115 108 0.08
116 285 0.20
117 554 0.40
118 414 0.30
119 38 0.03
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.42
Consensus pattern (117 bp):
TCACCTGATCTTGGCTCAGTCCAGATCATTTCTTATGATTCGTGGTTTCATCCCGATCATCTATT
TTGACCTTGACTCGATCCTGGTCACTTCATTTGACTCGTGGTTTTGTTTCGA
Found at i:564903 original size:21 final size:21
Alignment explanation
Indices: 564879--564935 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
564869 CCAATGTCCT
* *
564879 TGGTGCTCGAGCCTTAACCCC
1 TGGTGGTCGGGCCTTAACCCC
*
564900 TGGTGGTCGGGCCTTAACGCC
1 TGGTGGTCGGGCCTTAACCCC
564921 TGGTGGTCGGGCCTT
1 TGGTGGTCGGGCCTT
564936 TGCACCTATT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.09, C:0.30, G:0.35, T:0.26
Consensus pattern (21 bp):
TGGTGGTCGGGCCTTAACCCC
Found at i:570880 original size:216 final size:216
Alignment explanation
Indices: 570504--570937 Score: 789
Period size: 216 Copynumber: 2.0 Consensus size: 216
570494 AAAGGCCCCA
* *
570504 AAAAAGATGGTACGATCATGTAGGTGCAAAGGCTCTAGATAAGCTTCGACATAAGGCATGCGTAT
1 AAAAAGATGGTACGATCATGTAGGTGCAAAGGCTCTAGATAAGCTTCGACAAAAGGCAGGCGTAT
*
570569 AGGCATAAAACCTTCTCAAATAGTTATATATGAAATGGGTATGGTTATTGTAGCACCAGGCAAGA
66 AGGCATAAAACCTTCTCAAATAGTTAGATATGAAATGGGTATGGTTATTGTAGCACCAGGCAAGA
* *
570634 AAGTTTTTAGAAGGCTCAAGGTGTGGGCACTCTTCCAAAGAGCCTAGAACCTTTTGGACTTGGTG
131 AAGTTTTTAGAAGGCTCAAGGTGCGGGCACTCTTCCAAAGAGCCTAGAACCTTTTGGACTTAGTG
570699 CACCATAGAGTGTTTGGAACC
196 CACCATAGAGTGTTTGGAACC
* *
570720 AAAAAGATGGTGCGATCATGTAGGTGCAAAGGCTCT-GAATAAGCTTCGACAAAAGGTAGGCGTA
1 AAAAAGATGGTACGATCATGTAGGTGCAAAGGCTCTAG-ATAAGCTTCGACAAAAGGCAGGCGTA
570784 TAGGCATAAAACCTTCTCAAATAGTTAGATATGAAATGGGTATGGTTATTGTAGCACCAGGCAAG
65 TAGGCATAAAACCTTCTCAAATAGTTAGATATGAAATGGGTATGGTTATTGTAGCACCAGGCAAG
570849 AAAGTTTTTAGAAGGCTCAAGGTGCGGGCACTCTTCCAAAGAGCCTAGAACCTTTTGGACTTAGT
130 AAAGTTTTTAGAAGGCTCAAGGTGCGGGCACTCTTCCAAAGAGCCTAGAACCTTTTGGACTTAGT
570914 GCACCATAGAGTGTTTGGAACC
195 GCACCATAGAGTGTTTGGAACC
570936 AA
1 AA
570938 CACCTTTCTA
Statistics
Matches: 210, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
215 1 0.00
216 209 1.00
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (216 bp):
AAAAAGATGGTACGATCATGTAGGTGCAAAGGCTCTAGATAAGCTTCGACAAAAGGCAGGCGTAT
AGGCATAAAACCTTCTCAAATAGTTAGATATGAAATGGGTATGGTTATTGTAGCACCAGGCAAGA
AAGTTTTTAGAAGGCTCAAGGTGCGGGCACTCTTCCAAAGAGCCTAGAACCTTTTGGACTTAGTG
CACCATAGAGTGTTTGGAACC
Found at i:574759 original size:26 final size:26
Alignment explanation
Indices: 574722--574775 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
574712 TTATAATGCA
574722 AAATTGAGTTCAGCTGCACCATCACC
1 AAATTGAGTTCAGCTGCACCATCACC
* * *
574748 AAATTGATTTCAGTTTCACCATCACC
1 AAATTGAGTTCAGCTGCACCATCACC
574774 AA
1 AA
574776 GTCCTTAACT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.28, G:0.11, T:0.28
Consensus pattern (26 bp):
AAATTGAGTTCAGCTGCACCATCACC
Found at i:578394 original size:21 final size:21
Alignment explanation
Indices: 578370--578416 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
578360 GCTTGCCTTA
578370 ATGGCATCCTTATCAATGCCC
1 ATGGCATCCTTATCAATGCCC
578391 ATGGCATCCTTATCAATGCCC
1 ATGGCATCCTTATCAATGCCC
578412 ATGGC
1 ATGGC
578417 TCGAAAGTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.23, C:0.32, G:0.17, T:0.28
Consensus pattern (21 bp):
ATGGCATCCTTATCAATGCCC
Found at i:585527 original size:26 final size:25
Alignment explanation
Indices: 585493--585562 Score: 88
Period size: 26 Copynumber: 2.7 Consensus size: 25
585483 CCTTCACTTT
585493 GCCCACTATCACCTCCACTTTGGATA
1 GCCCACTATCACCTCCAC-TTGGATA
*
585519 GCCTC-CTATCACCTCTAACTTGGATA
1 GCC-CACTATCACCTC-CACTTGGATA
*
585545 GCCCACTATCACTTCCAC
1 GCCCACTATCACCTCCAC
585563 CTCGGACAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
25 3 0.08
26 32 0.84
27 3 0.08
ACGTcount: A:0.23, C:0.40, G:0.10, T:0.27
Consensus pattern (25 bp):
GCCCACTATCACCTCCACTTGGATA
Found at i:593699 original size:35 final size:36
Alignment explanation
Indices: 593649--593741 Score: 98
Period size: 35 Copynumber: 2.6 Consensus size: 36
593639 AATCACATCC
* * * *
593649 AACACCATTAGCAGATGCTAGCCTATTATTGTCTCA
1 AACACCATTACCAGATGCTAGCCCATTAGTGCCTCA
* * * *
593685 AA-ACCATTACCAGATGTTGGCCCCTTGGTGCCTCA
1 AACACCATTACCAGATGCTAGCCCATTAGTGCCTCA
*
593720 AACACCATTGCCAGATGCTAGC
1 AACACCATTACCAGATGCTAGC
593742 ACTTCCCTCG
Statistics
Matches: 45, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
35 27 0.60
36 18 0.40
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (36 bp):
AACACCATTACCAGATGCTAGCCCATTAGTGCCTCA
Found at i:632022 original size:44 final size:45
Alignment explanation
Indices: 631942--632028 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 45
631932 ACATGCCTTA
***
631942 CCAAGTGCCAGCATCTACCAAAAAGGTGTTTGAAGTAA-AACCCC
1 CCAAGTGCCAGCATCTACCAAAAAGGTGTCCAAAGTAACAACCCC
* * *
631986 CCAAGTGCTAGCATCTAGCAAAGAGGTGTCCAAAGTAACAACC
1 CCAAGTGCCAGCATCTACCAAAAAGGTGTCCAAAGTAACAACC
632029 TACAGCAAGG
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 32 0.89
45 4 0.11
ACGTcount: A:0.37, C:0.26, G:0.20, T:0.17
Consensus pattern (45 bp):
CCAAGTGCCAGCATCTACCAAAAAGGTGTCCAAAGTAACAACCCC
Found at i:642758 original size:45 final size:45
Alignment explanation
Indices: 642671--642759 Score: 115
Period size: 45 Copynumber: 2.0 Consensus size: 45
642661 CTCACTGAAG
* * * * **
642671 GCTAGCATGTGTTAATGGTGGTTGAGGTAGGTGCTTGTACTAAAA
1 GCTAGCATGTGTCAATAGTGGCTGAGGTAGGTGCGTACACTAAAA
*
642716 GCTAGCTTGTGTCAATAGTGGCTGAGGTAGGTGCGTACACTAAA
1 GCTAGCATGTGTCAATAGTGGCTGAGGTAGGTGCGTACACTAAA
642760 GGCCAAATTA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.25, C:0.12, G:0.33, T:0.30
Consensus pattern (45 bp):
GCTAGCATGTGTCAATAGTGGCTGAGGTAGGTGCGTACACTAAAA
Found at i:661647 original size:20 final size:19
Alignment explanation
Indices: 661619--661657 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
661609 TTGTACTATT
661619 TTTTATATTAATAAAAACAC
1 TTTTATATT-ATAAAAACAC
* *
661639 TTTTCTATTATGAAAACAC
1 TTTTATATTATAAAAACAC
661658 CAAAGGTTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.44, C:0.13, G:0.03, T:0.41
Consensus pattern (19 bp):
TTTTATATTATAAAAACAC
Found at i:676189 original size:23 final size:23
Alignment explanation
Indices: 676152--676225 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 23
676142 GATGGTCGAG
* * *
676152 GCATGCACCCACACCATGCACAA
1 GCATGCGCCCGCACCATGCACTA
** **
676175 GCATGCGTTCGCACCATGTGCTA
1 GCATGCGCCCGCACCATGCACTA
*
676198 GCATGTGCCCGCACCATGCACTA
1 GCATGCGCCCGCACCATGCACTA
676221 GCATG
1 GCATG
676226 TGATGATGAT
Statistics
Matches: 39, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.24, C:0.36, G:0.22, T:0.18
Consensus pattern (23 bp):
GCATGCGCCCGCACCATGCACTA
Found at i:681774 original size:24 final size:24
Alignment explanation
Indices: 681747--681793 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
681737 CGAGAACTCC
*
681747 TGGTCTACTGACCAACACAGCTTA
1 TGGTCTACTCACCAACACAGCTTA
*
681771 TGGTCTACTCACCAACGCAGCTT
1 TGGTCTACTCACCAACACAGCTT
681794 GTGGCTTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (24 bp):
TGGTCTACTCACCAACACAGCTTA
Found at i:693869 original size:37 final size:38
Alignment explanation
Indices: 693803--693878 Score: 109
Period size: 37 Copynumber: 2.0 Consensus size: 38
693793 CTTCATGTGC
*** *
693803 TTCAAGATGAGTTAGATGGGGAGCTTATAGGTT-ATGT
1 TTCAAGATGAGTTAGATGAAAAGCCTATAGGTTGATGT
693840 TTCAAGATGAGTTAGATGAAAAGCCTATAGGTTGATGT
1 TTCAAGATGAGTTAGATGAAAAGCCTATAGGTTGATGT
693878 T
1 T
693879 GAGAGCACGT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
37 29 0.85
38 5 0.15
ACGTcount: A:0.30, C:0.07, G:0.29, T:0.34
Consensus pattern (38 bp):
TTCAAGATGAGTTAGATGAAAAGCCTATAGGTTGATGT
Found at i:724909 original size:79 final size:79
Alignment explanation
Indices: 724768--724951 Score: 309
Period size: 79 Copynumber: 2.3 Consensus size: 79
724758 TTTGAGTAGT
*
724768 TCAGTGGA-CCTTAAGTACTAAATGGGTTGGTGAACCCTGAGATGGAACTAATCAAGAGACCTTA
1 TCAGTGGATCCTTAAGCACTAAATGGGTTGGTGAACCCTGAGATGGAACTAATCAAGAGACCTTA
724832 TGTCTAAAGTTGGA
66 TGTCTAAAGTTGGA
* *
724846 TCAGTGGATCTTTAAGCACTGAATGGGTTGGTGAACCCTGAGATGGAGA-TAATCAAGAGACCTT
1 TCAGTGGATCCTTAAGCACTAAATGGGTTGGTGAACCCTGAGATGGA-ACTAATCAAGAGACCTT
724910 ATGTCTAAAGTTGGA
65 ATGTCTAAAGTTGGA
*
724925 TCAGTGGATCCTTAAACACTAAATGGG
1 TCAGTGGATCCTTAAGCACTAAATGGG
724952 CTTTGAGATG
Statistics
Matches: 98, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
78 8 0.08
79 89 0.91
80 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (79 bp):
TCAGTGGATCCTTAAGCACTAAATGGGTTGGTGAACCCTGAGATGGAACTAATCAAGAGACCTTA
TGTCTAAAGTTGGA
Found at i:726389 original size:22 final size:24
Alignment explanation
Indices: 726367--726438 Score: 91
Period size: 22 Copynumber: 3.2 Consensus size: 24
726357 GTTACTCAAT
*
726367 AAATA-ATAAAAATTAGTAAAATA
1 AAATACATAAAAATTAATAAAATA
726390 AAATACAT-AAAA-TAATAAAATA
1 AAATACATAAAAATTAATAAAATA
726412 AAATACATAAAAA-TAA-AAAATCA
1 AAATACATAAAAATTAATAAAAT-A
726435 AAAT
1 AAAT
726439 GAAAAATAAA
Statistics
Matches: 45, Mismatches: 1, Indels: 6
0.87 0.02 0.12
Matches are distributed among these distances:
22 22 0.49
23 21 0.47
24 2 0.04
ACGTcount: A:0.72, C:0.04, G:0.01, T:0.22
Consensus pattern (24 bp):
AAATACATAAAAATTAATAAAATA
Found at i:726414 original size:13 final size:13
Alignment explanation
Indices: 726383--726454 Score: 69
Period size: 13 Copynumber: 5.4 Consensus size: 13
726373 TAAAAATTAG
726383 TAAAATAA-AATACA
1 TAAAATAATAA-A-A
726397 TAAAATAATAAAA
1 TAAAATAATAAAA
726410 TAAAATACATAAAAA
1 TAAAATA-AT-AAAA
726425 TAAAA-AATCAAAA
1 TAAAATAAT-AAAA
*
726438 TGAAA-AATAAAA
1 TAAAATAATAAAA
726450 TAAAA
1 TAAAA
726455 AAATTTGGGA
Statistics
Matches: 52, Mismatches: 3, Indels: 8
0.83 0.05 0.13
Matches are distributed among these distances:
12 8 0.15
13 21 0.40
14 12 0.23
15 11 0.21
ACGTcount: A:0.75, C:0.04, G:0.01, T:0.19
Consensus pattern (13 bp):
TAAAATAATAAAA
Found at i:726437 original size:23 final size:22
Alignment explanation
Indices: 726367--726456 Score: 85
Period size: 22 Copynumber: 3.9 Consensus size: 22
726357 GTTACTCAAT
*
726367 AAATA-ATAAAAATTAGTAAAATA
1 AAATACATAAAAA-TA-AAAAATA
726390 AAATACAT-AAAATAATAAAATA
1 AAATACATAAAAATAA-AAAATA
726412 AAATACATAAAAATAAAAAATCA
1 AAATACATAAAAATAAAAAAT-A
* *
726435 AAATGAAAAATAAAATAAAAAA
1 AAAT-ACATA-AAAATAAAAAA
726457 ATTTGGGACG
Statistics
Matches: 58, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
22 21 0.36
23 21 0.36
24 5 0.09
25 11 0.19
ACGTcount: A:0.74, C:0.03, G:0.02, T:0.20
Consensus pattern (22 bp):
AAATACATAAAAATAAAAAATA
Found at i:734761 original size:37 final size:37
Alignment explanation
Indices: 734720--734791 Score: 99
Period size: 37 Copynumber: 1.9 Consensus size: 37
734710 TGACCATCTC
* * *
734720 GATCACTGATGATGGATTGAGGAACTACCTAATACGT
1 GATCACTAATGATGGATTAAAGAACTACCTAATACGT
* *
734757 GATCACTAATGATTGATTAAAGAACTCCCTAATAC
1 GATCACTAATGATGGATTAAAGAACTACCTAATAC
734792 TTGACCACAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (37 bp):
GATCACTAATGATGGATTAAAGAACTACCTAATACGT
Found at i:746360 original size:26 final size:28
Alignment explanation
Indices: 746311--746369 Score: 77
Period size: 26 Copynumber: 2.2 Consensus size: 28
746301 AAACTCCTAA
* **
746311 AAAAATTTTTAAAAAAATCTTGAACCAT
1 AAAAATTTTTAAAAAAATCATGAAAAAT
746339 AAAAA-TTTT-AAAAAATCATGAAAAAT
1 AAAAATTTTTAAAAAAATCATGAAAAAT
746365 AAAAA
1 AAAAA
746370 ATTAGTCATC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 19 0.68
27 4 0.14
28 5 0.18
ACGTcount: A:0.63, C:0.07, G:0.03, T:0.27
Consensus pattern (28 bp):
AAAAATTTTTAAAAAAATCATGAAAAAT
Found at i:760331 original size:85 final size:86
Alignment explanation
Indices: 760168--760331 Score: 199
Period size: 85 Copynumber: 1.9 Consensus size: 86
760158 GGGTGCTCGA
* * * * * *
760168 GGCCACTGTGATGATCATTGGCTGATGAGATGATGGGAATTAGGTTCCTCCCTATTGAGTTTAGG
1 GGCCACTATGATGATCATTGGCTAATAAGATAATGGGAACTAGGTTCCTCCCTATCGAGTTTAGG
* *
760233 AATGTTGAGTTTGATGCTTGG
66 AATCTTAAGTTTGATGCTTGG
*
760254 GGCCACTATGATGATCA-TGGCTAATAAGATAATGGGAGCTAGGTTCCT-CCTAATCGAGTTT-G
1 GGCCACTATGATGATCATTGGCTAATAAGATAATGGGAACTAGGTTCCTCCCT-ATCGAGTTTAG
*
760316 GAAATCTTAATTTTGA
65 G-AATCTTAAGTTTGA
760332 CCCTATGAGG
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
84 5 0.08
85 45 0.68
86 16 0.24
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (86 bp):
GGCCACTATGATGATCATTGGCTAATAAGATAATGGGAACTAGGTTCCTCCCTATCGAGTTTAGG
AATCTTAAGTTTGATGCTTGG
Found at i:762946 original size:90 final size:90
Alignment explanation
Indices: 762789--762954 Score: 305
Period size: 90 Copynumber: 1.8 Consensus size: 90
762779 CCCAAACCAA
* * *
762789 AGGGCTAGCATCTACCAATGGTGTTGGATGCCATTGCTTGTATGAAGCAAGGGCCAAGTGTTGTT
1 AGGGCTAGCATCTACCAATGGTGTTGGATGCCATTGCTTGTATGAAGCAAAGGCCAAGTGCTATT
762854 GATGGCGTGCAGGCAGAATCGAGAC
66 GATGGCGTGCAGGCAGAATCGAGAC
762879 AGGGCTAGCATCTACCAATGGTGTTGGATGCCATTGCTTGTATGAAGCAAAGGCCAAGTGCTATT
1 AGGGCTAGCATCTACCAATGGTGTTGGATGCCATTGCTTGTATGAAGCAAAGGCCAAGTGCTATT
762944 GATGGCGTGCA
66 GATGGCGTGCA
762955 AGCAAAACTG
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
90 73 1.00
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (90 bp):
AGGGCTAGCATCTACCAATGGTGTTGGATGCCATTGCTTGTATGAAGCAAAGGCCAAGTGCTATT
GATGGCGTGCAGGCAGAATCGAGAC
Found at i:771379 original size:26 final size:27
Alignment explanation
Indices: 771338--771392 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 27
771328 CATGGGTTGA
*
771338 CTTAGGCATACGGAGTTCATTCCCAGT
1 CTTAGGCATACAGAGTTCATTCCCAGT
771365 CTTA-GCATACAGAGTTCATTCCCAGT
1 CTTAGGCATACAGAGTTCATTCCCAGT
771391 CT
1 CT
771393 AAGATTGGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (27 bp):
CTTAGGCATACAGAGTTCATTCCCAGT
Found at i:772863 original size:904 final size:899
Alignment explanation
Indices: 770988--773855 Score: 4261
Period size: 904 Copynumber: 3.2 Consensus size: 899
770978 GTGCTAATGA
770988 ATGAAACTTCACGTGAA-GCTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
1 ATGAAACTTCACGTGAAGGC-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* **
771052 GGCACGCAGAAATATAAAGATGTGCCTAAACCCATGTACCACCCTATCGATCCACGGCTTGCGCA
65 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * * * *
771117 TCCCATCTCTCTGGCCGACGTAGTGCCCACTCGCCTGCCCGCCTGCTCGTTTCATTGGTTGGCTT
130 TCCCGTCCCTCTGGCCGGCGTAGTGCCCGC-CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
*
771182 AGGCATACGGAGTTCA-TCCCTAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCG
194 AGGCATACGGAGTTCATTCCC-AGTCTAAGATTAGACCAGACCGAGGGTTGTGGCAGCAGGATCG
* * *
771246 ATAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAG
258 ATAGCATGCAGAGGGGGACCCGGCCAATCCCC-GCTTGCGCATCCCACCCCTCTGGCCGGCTGAG
* * * * *
771311 CACCCGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTTAGCATACA
322 TACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATA
* * * * *
771376 GAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGATTACAGCAGCACATGCTGGGCTCAGGC
387 GAGTTCATTCCCAGTCTAAGATCGGA-CCGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGC
* * * *
771441 ATGTGCTAGTGC-CATATTTTTCTTCCTCAGGGCACCATCG-CTGGAGCATCACCAGAGAACCTG
451 ATGTGCTGGTGCGC--ATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCACCGGAGAACCTG
* * *
771504 ACCGACGGCATTAGGG-TTCTAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATG
513 ACCGACGGCATTGGGGTTTCGA-CGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATG
* * *
771568 GGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTTATCAAACCTCGAGAACTCATACCCC
577 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * *
771633 CTTAAAGAGCATTTGAGAGTTTACATGTTTGCTGTCAGTAGCCATTAAAGTATCTGAAATGGGGA
642 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
771698 CATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTCTTTGTA-CA
707 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG-AGCA
*
771762 TGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGG-TAAAACCTCCTTCCGAAAAAATT
771 TGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-CTCCTTCCGAAAAAATT
* *
771826 TTAAAAAATCCCGAAGCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCC
835 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
*
771891 ATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
1 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
771956 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCAT
66 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
772021 CCCGTCCCTCTGGCCGGCGTAGTGCCCGCCAGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
131 CCCGTCCCTCTGGCCGGCGTAGTGCCCGCC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * *
772086 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAACAGGATCGAC
195 GGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGTGGCAGCAGGATCGAT
* ** * *
772151 AGCATGCAGAGGGGGACCAGGCCAATCCCCAGCTTATGCGTCCCACCCCTCTGGGCGGCTGAGTA
260 AGCATGCAGAGGGGGACCCGGCCAATCCCC-GCTTGCGCATCCCACCCCTCTGGCCGGCTGAGTA
* *
772216 CCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATAGA
324 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAGA
* ** *
772281 GTTCATTCCCAATCTAAGATCGGACCGATCCGAGGGTTGTGGCAGCAGATGCTGGGCTCGGGCAT
389 GTTCATTCCCAGTCTAAGATCGGACCGA-CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCAT
** *
772346 GTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGATTATCACCGGACAACCTGACCG
453 GTGCTGGTG-CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCG
* * *
772411 ACGACATTGGGGTTTCGACCATCGAGGGGGCCAGGGGGGTGTGCACACATGATGTGTGATGGGTG
517 ACGGCATTGGGGTTTCGACGATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGTGTGATGGGTG
*
772476 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCACACCCCCTTA
581 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
772541 AAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
646 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
772606 TTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGAGCATGCCA
711 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGAGCATGCCA
*
772671 ACAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
776 ACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
** *
772736 AATCTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
841 AATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
* ** *
772795 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGATATAAAAATTGCATTG
1 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
772860 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCAT
66 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * ** *
772925 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCACCCGTTCGCTCTTTTCGTCGGTTGGCTTA
131 CCCGTCCCTCTGGCCGGCGTAGTGCCCGCC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * *
772990 GGCATACGGAGTTCATTCCCAGTCTAAGATTAGATC-GCACTGAGGGTTGTGGCAGTAGGATCGG
195 GGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAG-ACCGAGGGTTGTGGCAGCAGGATCGA
* * ** *
773054 TAGCATACAGAGGGGGACCCGGGCAATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTAAGT
259 TAGCATGCAGAGGGGGACCCGGCCAATCCCCG-CTTGCGCATCCCACCCCTCTGGCCGGCTGAGT
* * * *
773119 GCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGG
323 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAG
* **
773184 AGTTCATTCCCAGTCTAAGATCGGACCGGGCCGAGGGTTACGTTAGCACATGCTGGGCTCGGGCA
388 AGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
* * *
773249 TATGCTGGTGCTGCATTTTTCTTCTGT-GGGGCACCATTGTCGGAGCATCGCCGGAGAACCTGAC
452 TGTGCTGGTGC-GCATTTTTCTTC-GTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
* * * *
773313 CGGCGGCATTGGGGTTCCGGCGATC-AGGGGGGCCGGGGGGTGTGCGCACGTGATGTGTGATGGG
515 CGACGGCATTGGGGTTTCGACGATCGA-GGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGG
* * * *
773377 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCCTCATCAAACCTAGAGAACACACAACCCG
579 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATC-CCTCATCAAACCTCGAGAACTCACACCCCC
773442 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
643 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
773507 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-ATGCAT
708 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGA-GCAT
* ** *
773571 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTCAGGGCCAAAACTCCTTCTG-AAAAATTTT
772 GCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* *
773635 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCC
837 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
773698 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
1 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * * * *
773763 GCATGCAGAAATATGAAGATGTGCCTAAACCCACGTACCACCCGACCGATCCCCTGCTTGCGTAT
66 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
773828 CCCG-CCCTTCTGGCCGGC-TGAGTGCCCG
131 CCCGTCCC-TCTGGCCGGCGT-AGTGCCCG
773856 TAAGCTCGTT
Statistics
Matches: 1779, Mismatches: 165, Indels: 42
0.90 0.08 0.02
Matches are distributed among these distances:
902 7 0.00
903 746 0.42
904 1018 0.57
905 8 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCCCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGTGGCAGCAGGATCGATA
GCATGCAGAGGGGGACCCGGCCAATCCCCGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGTACC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGT
TCATTCCCAGTCTAAGATCGGACCGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTG
CTGGTGCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGG
CATTGGGGTTTCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGAGCATGCCAACAAA
AATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
Found at i:773179 original size:26 final size:26
Alignment explanation
Indices: 773150--773202 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
773140 GTTGACTTAG
773150 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
773176 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
773202 G
1 G
773203 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:773918 original size:26 final size:26
Alignment explanation
Indices: 773882--773956 Score: 141
Period size: 26 Copynumber: 2.9 Consensus size: 26
773872 GTTATCTTAG
*
773882 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
773908 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
773934 GCATACGGAGTTCATTCCCAGTC
1 GCATACGGAGTTCATTCCCAGTC
773957 AAAGATTGGA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:774610 original size:756 final size:758
Alignment explanation
Indices: 773150--774611 Score: 2359
Period size: 756 Copynumber: 1.9 Consensus size: 758
773140 GTTGACTTAG
* * * *
773150 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCGGACCAGAC
** **
773215 CGAGGGTTACGTTAGCACATGCTGGGCTCGGGCATATGCTGGTGCTGCATTTTTCTTCTGTGGGG
66 CGAGGGTTACGGCAGCACATGCTGGGCTCGACCATATGCTGGTGCTGCATTTTTCTTCTGTGGGG
* * * *
773280 CACCATTGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCAGGGGGG
131 CACCATCGTCGGAGCATCACCGGAGAACCTGACAGGCGGCATTGGGGTTCCGACGATCAGGGGGG
* *
773345 CCGGGGGGTGTGCGCACGTGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
196 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
773410 CGCCTCATCAAACCTAGAGAACACACAACCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
261 CGCCTCATCAAACCTAGAGAACACACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
773475 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
326 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
773540 TTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
391 TTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTATACCAAGT
*
773605 TCAGGGCCAAAACTCCTTCTGAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
456 TCAGGGCCAAAACTCCTTCTGAAAAATTTCAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
773670 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
521 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* ** *
773735 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACGTA
586 GAATTTACAAGCCATAAAAATGACATTGAAATGCAGAAATATGAAGATGTGCCTAAACCAACGTA
* * *
773800 CCACCCGACCGATCCCCTGCTTGCGTATCCCGCCCTTCTGGCCGGCTGAGTGCCCGTAAGCTCGT
651 CCACCCGACCGATCCACGGCTTGCGTATCCCGCCCTTCTGGCCGACTGAGTGCCCGTAAGCTCGT
773865 TTCGTGGGTTATCTTAGGCATACAGAGTTCATTCCCAGTCTAA
716 TTCGTGGGTTATCTTAGGCATACAGAGTTCATTCCCAGTCTAA
*
773908 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATTGGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCGGACCAGAC
* * *
773973 CGAGGGTTACGGCAGCACATGCTGGGCTCGACCATGTGTTGGTGCTGTATTTTTCTTC-GCTGGG
66 CGAGGGTTACGGCAGCACATGCTGGGCTCGACCATATGCTGGTGCTGCATTTTTCTTCTG-TGGG
* * *
774037 GCACCATCGTCGGAGCATCACCGGAGAACCTGATAGGTGGCATTGGGGTTCCGACGAT-TGGGGG
130 GCACCATCGTCGGAGCATCACCGGAGAACCTGACAGGCGGCATTGGGGTTCCGACGATCAGGGGG
*
774101 GTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
195 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
774166 TC-CCTCATCAAAGCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
260 TCGCCTCATCAAACCTAGAGAACACACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
774230 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
325 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
774295 TTTCGAGTTTTTAGCTGAATTTTTTT-TAGCATGCCAACAAAAATACAAGGATCACGTATACCAA
390 CTTCGAGTTTTTAGCTGAATTTTTTTAT-GCATGCCAACAAAAATACAAGGATCACGTATACCAA
* *
774359 GTTC-GGGCCCAAAACTCCTT-TCGAAAAAATTTCAAAAAA-CCCGAATCGTAGAAAGTTTCAAA
454 GTTCAGGG-CCAAAACTCCTTCT-G-AAAAATTTCAAAAAATCCCGAACCGTAAAAAGTTTCAAA
* *
774421 AATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
516 AATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
774486 TGTATGAATTTACGAGCCATAAAAATGATATTGAAATGCAGAAATATGAAGATGTGCCTAAACCA
581 TGTATGAATTTACAAGCCATAAAAATGACATTGAAATGCAGAAATATGAAGATGTGCCTAAACCA
* * **
774551 A-GCTACCACCCTATCGATCCACGGCTTGCGTATCCC-ATCTCTCTGGCCGAC-GTAGTGCCCG
646 ACG-TACCACCCGACCGATCCACGGCTTGCGTATCCCGCCCT-TCTGGCCGACTG-AGTGCCCG
774612 CCCGCCTGCC
Statistics
Matches: 649, Mismatches: 47, Indels: 18
0.91 0.07 0.03
Matches are distributed among these distances:
755 9 0.01
756 389 0.60
757 84 0.13
758 167 0.26
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (758 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCGGACCAGAC
CGAGGGTTACGGCAGCACATGCTGGGCTCGACCATATGCTGGTGCTGCATTTTTCTTCTGTGGGG
CACCATCGTCGGAGCATCACCGGAGAACCTGACAGGCGGCATTGGGGTTCCGACGATCAGGGGGG
CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CGCCTCATCAAACCTAGAGAACACACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
TTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTATACCAAGT
TCAGGGCCAAAACTCCTTCTGAAAAATTTCAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGACATTGAAATGCAGAAATATGAAGATGTGCCTAAACCAACGTA
CCACCCGACCGATCCACGGCTTGCGTATCCCGCCCTTCTGGCCGACTGAGTGCCCGTAAGCTCGT
TTCGTGGGTTATCTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:775718 original size:26 final size:26
Alignment explanation
Indices: 775682--775734 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
775672 GTTAACTTAG
775682 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
775708 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
775734 G
1 G
775735 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:776619 original size:26 final size:26
Alignment explanation
Indices: 776583--776635 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
776573 GTTGACTTAG
776583 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
776609 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
776635 G
1 G
776636 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:777507 original size:26 final size:26
Alignment explanation
Indices: 777470--777548 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
777460 GTTGACTTAG
* *
777470 GCATACGGAGTTCATTCCCAGTGTGA
1 GCATACGAAGTTCATTCCCAGTGTAA
777496 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTGTAA
*
777522 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTGTAA
777548 G
1 G
777549 ATCAGACCGA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTGTAA
Found at i:779698 original size:903 final size:903
Alignment explanation
Indices: 774808--782552 Score: 9625
Period size: 903 Copynumber: 8.6 Consensus size: 903
774798 GTTCACTTAG
* * * * * *
774808 GCATAAGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTCCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * * *
774873 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCTGGGGTAGCATCGTCAGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* ** *
774938 ACCTGACCGGTGGCATTGGGGTTCCGACGATC-GGGGGG-C-GGGGGGTGCACGCACATGATGTT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
775000 CGATGGGTGCT-GTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
775064 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
**
775129 GGGGACACTTTTTTCAAACAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
775194 TGCACGCCACCAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** * *
775259 ATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATGGTGAAAAATAGAAAACGAGTCGTCTT
456 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * * *
775324 GCCATGAACCTTCACGTGAAGGCTTAAGCGACCTTTGTATGAATTTAAAAGACATAAAAATGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* ** *
775389 TTGGCACGCAGAAATATGAAGATGTACCTAAACTAACGTACCACCCTATCGATCCACGGCTTGCG
586 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * **
775454 CATCCCGTCTCTCTGGCCGGCGTAATGCCC-GCCTACCCGCATGCCCGCTCGTTTCATCGGTTGG
651 CATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGA-CCGCCCGCCCGCTCGTTTCATCGGTTGG
* ** * * *
775518 CTGAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCA-ATGGTTGCGACAGTAGGA
715 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CAGAGGGTTGCGGCAGCAGGA
* * * * *
775582 TCGGTAGCACGCAGAGGGGGACCTGACCGATCCCTGGCTTGTGCATCTCGCCCCTCTGGCCGGCT
779 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATC-CGCCCCTCTGGCCGGCT
* * *
775647 GAGCGCCCGCACCCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
843 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
775708 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
775773 CTCGGGCATGTGCTGGAGCCGTATTTTTCTTCATCGGGGCACTATCGTTGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
775838 ACCTGACCGGCGGCATTGGTGTTCTGGCGATC-GAGGGGCCGGGGGGAGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-GTGTGCGCACATGATGT
* * *
775902 CCGATGGGTGCTGGTACTTAGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
775967 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
776031 TGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
776096 GTGCATGCCAA-AAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGT-TTTCCAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCCGAAA
* * * * * * *
776159 AAAGTTTAAAAAATACCAAACC-AAAAAAGTTTCAAAAATCGTGAAATATAGAAAACGAGTCATC
454 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
776223 TTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
776288 CTTTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCAGGGCTTG
584 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** * * *
776353 CGCATCCCGTCTCTCTGGCCGGCATAGTGCCTGCCCGCCCGTCTGCCCGCTCGTTTCATCGGTTG
649 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGACCGCCCGCCCGCTCGTTTCATCGGTTG
** *
776418 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCAGCAGCAGGA
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCAGGA
* * ** ** * *
776483 TCGGTAGCACGCAAAGGGGGAATCGGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGTT
779 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGGCT
776548 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * **
776609 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGTTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
776674 CTCGGGAATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCACCGCCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * ***
776739 ACCTGACCGGCAGCATTGGGGTTTCGATGATCGGGGGTTTC-GGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
776803 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
776868 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGCAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
776933 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
776998 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAGAACTCCTTCCGAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
777063 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
456 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
777128 GTCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
777193 TTTGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACG
586 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
777258 AATCCCGTCTCTCTAGCC-AGCGTAGT----------------GTCCGCTCGTTTCGTCGGTTGG
651 CATCCCGTCTCTCTGGCCGA-CGTAGTGCCCACCCGACCGCCCGCCCGCTCGTTTCATCGGTTGG
* * * * * * *
777306 CTCAGGCACACGGAGTTCATTTCTAGTCTAAGATCAGACCGGACCAG-GGGTCGTGGTAGCAGGA
715 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CAGAGGGTTGCGGCAGCAGGA
* * * *
777370 TTGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCTGGCT
779 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC-GCCCCTCTGGCCGGCT
*
777435 GAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTGAGCAT
843 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT--C--------C--
777500 ACGAAGTTCATTCCCAGTGTAA
896 -C--AG-----T--C----TAA
* * * * * **
777522 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACAGAGGGTTACGGTAGCACATGCTATG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * ** *
777587 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGCCACCATCGTCGGAGCATCATCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGA
** * * *
777652 ACCTGACCGATGGCATTGGGGTTCCAACGATCGGGGGGGCCGGTGGGGGGTGTGCGCTCAAGATG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-G-GGGGGGTGTGCGCACATGATG
*
777717 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
777782 ACACCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
777847 ATGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTTGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* **
777912 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGCACCAAAACTCCTTCCGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
777977 AAATTTTAAAAAATCACGAA-CGAAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCCT
454 AAATTTTAAAAAATCCCGAACCG-TAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
778041 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATT
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* ** * *
778106 TCATTGAAACGTAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
583 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
778171 GCGCATCCCGTCTCTCTGGCC-AGCGTAGTGCCCGCCTG-CTCGCCCGACCGCTCATTTCGTCGG
648 GCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCACCCGAC-CGCCCGCCCGCTCGTTTCATCGG
** * * * *
778234 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGCCAGCA
711 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCA
* * * * * * * * *
778299 AGATCGACAACACACAGAGGGGGACCCGGTCGAACCCCGACTTGCGCATCCCGCCCTTCTAGCCG
776 GGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCG
* * *
778364 GCTGAGCGCTCGCACCCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
778428 GCATACGGAGTTCATTCCCAGTC-ACAGATCGAATCAGACTGAGGGTTACGGCAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTA-AGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGG
** * * * * **
778492 GCTCAAGCATATACTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCAAGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * *
778557 AACCTGACCGGTGGCATTGGGGTTCCGACGATCGAGGGGGCCGGAGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
778622 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
778687 CACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
778752 TGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
778817 GTGCATGCCAACAAAAATACAAGAATCGCGTCTACCAAGTTTGGGGCTAAAACTCCTACCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
778882 AATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
778947 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** *
779012 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCAAATCGATCCACGACTTGC
585 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
779077 ACATCCCGTCTCTCTGGTCGATGTAGTACCCACCCGACCGCCCGTCCGCTCGTTTCATCGGTTGG
650 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGACCGCCCGCCCGCTCGTTTCATCGGTTGG
* * * *
779142 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGATAGAGGGTTGTGGCAGCAGGAT
715 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCAGGAT
** * * * * * * **
779207 CGATAGCACACAGAGGGGGACCCGGTCGATTCCTGGCTTGTGCATCCACCCCTCTGGCCAACTGA
780 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCGCCCCTCTGGCCGGCTGA
* * * * * *
779272 GTGCCTGCACACTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCATTGCCAGTCCAA
845 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
779331 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * * *
779396 CTTGTGG-ATCTACTGGTGCTGTATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCAGGAG
66 CTCG-GGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * * * *
779460 AACCTAACTGGCGGCATTGGGGTTTCGGCCATCGGGGGGGCCGGGGGGGTTTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * * *
779525 GCAATGGGTGCTGGAACTTTGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
779590 CACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
779655 TGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGATTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* **
779720 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTGGCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
779785 AATTTGT-AAAAATCCCGAATCGGAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTC
455 AATTT-TAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
779849 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
779914 CATTCGCACGTAGAAATATGAAGATGTGCCTAAAGCCACCTACCACCTTATCAATCCACGGCTTG
584 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
779979 CGCATCCCGCCTCTCTAGCCGACGTAGTGCCCACCCG-CTCGCCCGCTCGCTCGTTTAATCGGTT
649 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGAC-CGCCCGCCCGCTCGTTTCATCGGTT
* ** *
780043 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGGAGGGTTATGGTAGCAGG
713 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCAGG
* * * * * * *
780108 ATCTGTAGCACGCAGAGGGAGACCCGATCGATCTCCGACTTGCGCATCCTGCCCCTTTGGCCAGC
778 ATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC-GCCCCTCTGGCCGGC
* * * * *
780173 TGAGCGCTCGTACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCACTCCCAGTCTAA
842 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
780235 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-CG--G---A----C---C---G----GA-C---C
* * * * **
780300 GGAGGGTTGCGGCAGCACATGCTCGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGG
41 -GAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
**
780365 CACCA---T-----CAT---CGGAGAACCTGACCGATGGCATTGGGGTTCCGACGATC--GGGGG
105 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
*
780417 CC--AGGGG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
170 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
780479 TACCTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
235 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
780544 CCAATAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACAC
300 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
780609 TTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGT
365 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
780674 TGGGGGGCAAAACTCCATT-CGAAAAAATTTTAAGAAATCCCGAACCGTAAAAAG-TTTAAAAAT
430 TTGGGGCCAAAACTCC-TTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAAT
* * *
780737 CATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTTAGGGACCATTGT
494 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
780802 ATGAATTTACAAGCCATAAAAATGGAATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
559 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
780867 TACCACCCTATCGATCCACGGCTTGAGCATCCCGTCTCTCTGGCTGGCATAGTGCCCGCCCGCCC
624 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT--------GCCC
* * * *
780932 ACCCGCCCGTCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAAGCATCCGGAGTTCATTCCCA
681 ACCCG-AC--CG--C-CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * * * * * * * *
780997 GTCTAAGATCGGACTGAACCGAGAGTTGCGACAGTAGAATCGACAACACGTAGAGGGGGACCCGG
740 GTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA
* * * *
781062 TCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTGGTGGG
805 TCGATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
781127 TTGAC-T-----TA--G-G--CA-T---A--C---
869 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
781142 G-A-A---A-TTCATTCCCAATCTAAGATCGGATCGGATCGAGGGTTACGGCAGCACATGCTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
** * * * * * *
781201 CTCGGGCATACGTTGGTGCCGCATTTTTTTTCATCGGGGCACCATTGTCGAAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * ** * *
781266 ACCTGACCGACGGCATTGGGGTTCTGGTGAT-TGGGGGGCCAGGGGGCGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGT
* * * *
781330 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATACCTCATCAAACCTTGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
781395 CACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGGCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
781460 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTTAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
781525 GTGCATGCCAACAAAAAATACAACGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTTCGAAA
390 GTGCATGCCAAC-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
*
781590 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTG-AAAATAGAAAACCAGTCGTC
454 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
781654 TTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTATATGAATTTACAAGCAATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
781719 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
584 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
781784 CGCATCCTGTCTCTCTGGCCGGCGTAGTG-CCA---GCCCGCCCGCCCGCTCGTTTCGTCGGTTG
649 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGACCGCCCGCCCGCTCGTTTCATCGGTTG
* * * * ** * **
781845 GGTTAGGCATATGGAGCTCATTTCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGATAGCAGGA
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCAGGA
* * * * * *
781910 TCGGCAGCGCGTAGAAGGGGACTCGATCGATCCCCGGCTTGCGCATCTCGCCCTTCTAGCCGGCT
779 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATC-CGCCCCTCTGGCCGGCT
* * *
781975 AAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAC-G-G---------AG--T--
843 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
782021 ---T-C--A-TTC--T--CAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * **
782075 CTCGGGCATGTGTTGGTGCTGCATTTTTCTTCACCGAGGCACCATTGTCGGAGTATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGA
** *
782140 ACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGTGGGGCC-GGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * **
782204 CGATGGGTGCTGGTACTTGGCCCTTATACTGGCCCGCTATCGATCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
** * *
782269 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTAAGTAGCCATTGAAGTGTCTAAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
782334 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGTTGAATTATTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
782399 TGCATGCCAACAAAAATACAAGGATCATGTCTACCATGTTGGGGGGCAAAACTCCTTTCGAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
782464 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAACAGAAAACGAGTCGTCTT
456 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
782529 ACCATGAAACTTGACGTGAAGGCT
521 GCCATGAAACTTCACGTGAAGGCT
782553 CGGGCATGTG
Statistics
Matches: 6005, Mismatches: 689, Indels: 329
0.86 0.10 0.05
Matches are distributed among these distances:
872 88 0.01
873 252 0.04
874 281 0.05
875 71 0.01
876 2 0.00
877 2 0.00
878 6 0.00
879 2 0.00
880 5 0.00
881 2 0.00
883 6 0.00
884 2 0.00
886 35 0.01
887 180 0.03
888 1 0.00
889 1 0.00
890 3 0.00
891 212 0.04
892 237 0.04
893 12 0.00
894 1 0.00
897 2 0.00
899 2 0.00
900 228 0.04
901 665 0.11
902 144 0.02
903 1138 0.19
904 731 0.12
905 8 0.00
906 148 0.02
907 2 0.00
908 1 0.00
909 1 0.00
910 2 0.00
911 1 0.00
912 2 0.00
913 320 0.05
914 278 0.05
915 9 0.00
916 471 0.08
917 9 0.00
918 2 0.00
919 32 0.01
921 12 0.00
922 4 0.00
923 1 0.00
924 3 0.00
925 2 0.00
926 3 0.00
927 147 0.02
928 2 0.00
929 3 0.00
930 59 0.01
931 2 0.00
932 168 0.03
933 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (903 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGACCGCCCGCCCGCTCGTTTCATCGGTTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCAGGATC
GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCGCCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:780238 original size:26 final size:25
Alignment explanation
Indices: 780209--780287 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 25
780199 GTTGACTTAG
*
780209 GCATACAGAGTTCACTCCCAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
780235 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
780261 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACG-AGTTCATTCCCAGTCTAA
780287 G
1 G
780288 ATCAGATCAG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
25 1 0.02
26 49 0.98
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:785146 original size:26 final size:26
Alignment explanation
Indices: 785116--785168 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
785106 GTTGACTTAG
*
785116 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
785142 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
785168 G
1 G
785169 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:786041 original size:26 final size:26
Alignment explanation
Indices: 786005--786057 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
785995 GTTGACTTAG
* *
786005 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
786031 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
786057 G
1 G
786058 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Done.