Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 30 of 129
Found at i:4058303 original size:26 final size:26
Alignment explanation
Indices: 4058274--4058326 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4058264 GTTGACTTAG
*
4058274 GCATACGGAGTTCATTATCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
*
4058300 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
4058326 G
1 G
4058327 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:4061583 original size:26 final size:26
Alignment explanation
Indices: 4061554--4061606 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4061544 GTTGACTTAG
*
4061554 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATAAGGAGTTAATTCCCAGTCTAA
*
4061580 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTAATTCCCAGTCTAA
4061606 G
1 G
4061607 ATCGCACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTAATTCCCAGTCTAA
Found at i:4062171 original size:26 final size:26
Alignment explanation
Indices: 4062135--4062187 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4062125 GTTGACTTAG
4062135 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
4062161 GCATCCGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
4062187 G
1 G
4062188 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:4063190 original size:400 final size:399
Alignment explanation
Indices: 4062450--4063228 Score: 1238
Period size: 400 Copynumber: 1.9 Consensus size: 399
4062440 GAGATTTTAC
* * *
4062450 AAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAA
1 AAGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* ** *
4062515 TCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAGTACAAGGATCATG
66 TCTTGTACACTTTGAGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAAAAAACAAGGATCACG
* ** * * *
4062580 TTTAACAATTTTGGTGCCAAAACGCCTTCCGAAAAAATTTTTAAAAATCCCGAACCGCAGAAAGT
131 TCTAACAATTGAGGTG-CAAAACGCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGT
* *
4062645 TTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
195 TTCAAAAATCATGAAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * *
4062710 GACCATTGTATGAATTTACAAGCCATAAAAATAGTATTGGCACGTAGAAATATGAAGATGTGCCT
260 GACCATTGTATGAATTTACAAGCCATAAAAATAGCAATGGCACGCAGAAATATGAAGATGTGCCT
* * *
4062775 AAACCCACCTACCACCTTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCATAGTGCC
325 AAACCCACCTACCACCCTATTGATACACGGCTTGCACATCCCGTCTCTCTGGCCAGCATAGTGCC
4062840 TGAGCAATTA
390 TGAGCAATTA
4062850 AAGTTTGCTGCCTA-TAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
1 AAGTTTGCTGCC-AGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
4062914 ATCTTGTACACTTTGAGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAAAAAACAAGGATCAC
65 ATCTTGTACACTTTGAGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAAAAAACAAGGATCAC
* * *
4062979 GTCTACCAAGTTCGAGGTG-AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAA
130 GTCTAACAA-TT-GAGGTGCAAAACGCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAA
*
4063043 GTTTCGAAAATCATGAAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
193 GTTTCAAAAATCATGAAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * * *
4063108 GGGATCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCATGCAGAAATATGAAGATGTGT
258 GGGACCATTGTATGAATTTACAAGCCATAAAAATAGCAATGGCACGCAGAAATATGAAGATGTGC
*
4063173 CTAAACCTACCTACCACCCTATTGATACACGGCTTGCACATCCCGTCTCTCTGGCC
323 CTAAACCCACCTACCACCCTATTGATACACGGCTTGCACATCCCGTCTCTCTGGCC
4063229 GATGTAGTGC
Statistics
Matches: 346, Mismatches: 30, Indels: 6
0.91 0.08 0.02
Matches are distributed among these distances:
400 339 0.98
401 3 0.01
402 4 0.01
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (399 bp):
AAGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAA
TCTTGTACACTTTGAGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAAAAAACAAGGATCACG
TCTAACAATTGAGGTGCAAAACGCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTT
TCAAAAATCATGAAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
ACCATTGTATGAATTTACAAGCCATAAAAATAGCAATGGCACGCAGAAATATGAAGATGTGCCTA
AACCCACCTACCACCCTATTGATACACGGCTTGCACATCCCGTCTCTCTGGCCAGCATAGTGCCT
GAGCAATTA
Found at i:4064166 original size:26 final size:26
Alignment explanation
Indices: 4064127--4064179 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4064117 GTTAACTTAG
*
4064127 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
*
4064153 GCATATGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
4064179 G
1 G
4064180 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:4065047 original size:26 final size:26
Alignment explanation
Indices: 4065018--4065074 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
4065008 TGGGTTGACT
*
4065018 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGAATACGGAGTTCATTCCCAGTC
4065044 TAAGAATACGGAGTTCATTCCCAGTC
1 TAAGAATACGGAGTTCATTCCCAGTC
4065070 TAAGA
1 TAAGA
4065075 TCACACGGGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
TAAGAATACGGAGTTCATTCCCAGTC
Found at i:4065276 original size:894 final size:895
Alignment explanation
Indices: 4063285--4065458 Score: 3101
Period size: 894 Copynumber: 2.4 Consensus size: 895
4063275 GAATTGGAGT
* * * **
4063285 GGACCGAGGGTTGCGGTAGCATATACTAGGG-TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
1 GGACAGAGGGTTGCGGTAGCACATGCT-GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAC
* * * * *
4063349 CGGGGCACCATTGTCGGAGCATCGTCAGAGAACCTGACCGACGGCATTAGGGTTCCTACGATCGA
65 CGGGGCACCATTGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG
*
4063414 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGTGTGCTGGTACTTGGCCCTTATATTGGCC
130 GGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * * *
4063479 CCCTATCCCTCATCAAAACTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
194 CCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGTGCATTTGAGATTTTACAGGTT
*
4063544 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTA
259 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC-CTTTTTTCAAATGGTCACAAAATCTTG
* * * *
4063609 TACACTTCGA-ATTGTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAGGGATCACGTCTAC
323 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACATCTAC
** * **
4063673 CAAGTTTGGGGCCAAAGCTGCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGA
388 CAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAA
* * *
4063738 AAATCGTGGAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCA
453 AAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * *
4063803 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCGCATAGAATTATGAAGATGTGCCGAAACC
518 TTGCATGAATTTACAAGCCATAAAAATGGCATTGGCGCA-AGAATTATGAAAATGTACCAAAACC
* * *
4063868 CACCTACCACCCTATCGATCCACGGCTTGCGAATCCCGTCTCTCTGGCCGGCGTGGTGCCCCGCC
582 CACCTACCACCCTATCGATCCACGGCTTGCGAATCCCGTCTCTCTGGCCAGCATAGT----CG-C
* *
4063933 TCCCGCCCGCCCGCTCGTTTTGTCTGTTGGCTTAGGCATACGGAGTTCATTTTCAGTCTAAGATC
642 -CCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATC
* *
4063998 AGACCGGACCGAGGGTTGCAGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGACCAATCCCCG
706 AGACCGCACCGAGGGTTGCAGCAGCAAGATCGACAGCACGCAGAGGAGGACCCGACCAATCCCCG
* * * *
4064063 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCTCGCACGCTCATTTCGTGGGTTAACTTAGG
771 GCTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTAACTTAAG
* * *
4064128 CATACGGAGTTCATTCCCAGTCTAAGCATATGGAATTCATTCCCAGTCTAAGATCAGACC
836 CATACGGAGTTCATTCCCAGTCTAAGAATACGGAATTCATTCCCAGTCTAAGATCACACC
* * * **
4064188 AGACCA-AGGGTTGCGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACAAATTTCTTCAC
1 GGA-CAGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAC
* * * ** * *
4064252 CGGGGCACCATTACCAGTGCATCACCGGAGAACTTGATCGACGGCATTGGGGTTCCGACGATCGG
65 CGGGGCACCATTGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG
* *
4064317 GGGGGCCGGGGGGTGTGCGCACATGATGTGAGATGGGTGCTGCTACTTGGCCCTTATATTGGCCC
130 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
4064382 CCTATCCCACATCAAACCTCGAGAACTCACAACCCCTTAAAGTGCATTTGAGATTTTACAGGTTT
195 CCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGTGCATTTGAGATTTTACAGGTTT
* *
4064447 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACCTTTTTTTCAAAAGGTCACAAAATCTTGT
260 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACC-TTTTTTCAAATGGTCACAAAATCTTGT
*
4064512 ACACTTCGAGTTTTTAGCTCAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACATCTACC
324 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACATCTACC
* * * *
4064577 ATGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATC-CTGAACTGTAAAAAGTTTCAA
389 AAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAA
* *
4064641 AAATCATGAAAAATAGAAAACGAGTCGTTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
453 AAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*
4064706 TTGCATGAATTTACAAGCCATAAAAATGGCATTTGCATGC-AGCAA-TATGAAAATGTACCAAAA
518 TTGCATGAATTTACAAGCCATAAAAATGGCATTGGC--GCAAG-AATTATGAAAATGTACCAAAA
* * *
4064769 CCCACCTACCACCGC-ATTGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCAGCATAGT-G-CC
580 CCCACCTACCACC-CTATCGATCCACGGCTTGCGAATCCCGTCTCTCTGGCCAGCATAGTCGCCC
* * *
4064831 CGCCCGCTCGCTCGTTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTC-CTAGTCTAAGATCGG
644 CGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCTC-AGTCTAAGATCAG
* * * * * * *
4064895 ACCGCACTGAGGGTTGCGGCAGTAGGATCGACAGCACGTAGAGGAGGACCCGACCGATCCTCGGC
708 ACCGCACCGAGGGTTGCAGCAGCAAGATCGACAGCACGCAGAGGAGGACCCGACCAATCCCCGGC
* * * * *
4064960 TTACGCAT-CCGTCCTTCTGGTCGACTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAAGCA
773 TTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTAACTTAAGCA
* *
4065024 TACGGAGTTCATTCCCAGTCTAAGAATACGGAGTTCATTCCCAGTCTAAGATCACACG
838 TACGGAGTTCATTCCCAGTCTAAGAATACGGAATTCATTCCCAGTCTAAGATCACACC
* * * * *
4065082 GGACAGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCCCC
1 GGACAGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACC
* * * * * *
4065147 GGGGCACTATCGCCGGGGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCAATCGGG
66 GGGGCACCATTGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
*
4065212 GGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
131 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
4065277 CTATCCCTCATCAAACCTCGTGAACTTACAACCCCTTAAAGTGCATTTGAGATTTTACAGGTTTG
196 CTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGTGCATTTGAGATTTTACAGGTTTG
* * *
4065342 CTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTA
261 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC-CTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
4065407 CACTTCAAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGG
325 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGG
4065459 GTCCGAACCG
Statistics
Matches: 1131, Mismatches: 128, Indels: 33
0.88 0.10 0.03
Matches are distributed among these distances:
893 2 0.00
894 438 0.39
895 122 0.11
898 1 0.00
901 1 0.00
902 187 0.17
903 374 0.33
904 4 0.00
905 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
GGACAGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACC
GGGGCACCATTGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGTGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACCTTTTTTCAAATGGTCACAAAATCTTGTAC
ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACATCTACCAA
GTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAA
TCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
CATGAATTTACAAGCCATAAAAATGGCATTGGCGCAAGAATTATGAAAATGTACCAAAACCCACC
TACCACCCTATCGATCCACGGCTTGCGAATCCCGTCTCTCTGGCCAGCATAGTCGCCCCGCCCGC
CCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGCACC
GAGGGTTGCAGCAGCAAGATCGACAGCACGCAGAGGAGGACCCGACCAATCCCCGGCTTACGCAT
CCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTAACTTAAGCATACGGAGT
TCATTCCCAGTCTAAGAATACGGAATTCATTCCCAGTCTAAGATCACACC
Found at i:4066254 original size:845 final size:841
Alignment explanation
Indices: 4064629--4066303 Score: 2479
Period size: 845 Copynumber: 2.0 Consensus size: 841
4064619 CCTGAACTGT
* *
4064629 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTTTTGCCATGAAACTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGG
* * *
4064694 CTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTTGCATGCAGCAATATGAAAA
66 CTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAAA
* ** *
4064759 TGTACCAAAACCCACCTACCACCGCATTGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCAGCA
131 TGTACCAAAACCCACCTACCACCGCATCGATCCACGGCTTGCAAATCCCGTCTCTCTGGCCAGCA
*
4064824 TAGTGCCCGCCCGCTCGCTCGTTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAA
196 TAGTGCCCGCCCGCTCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAA
* ** *
4064889 GATCGGACCGCACTGAGGGTTGCGGCAGTAGGATCGACAGCACGTAGAGGAGGACCCGACCGATC
261 GATCGGACCGCACTGAGGGTTGCAGCAACAGGATCGACAGCACGCAGAGGAGGACCCGACCGATC
* * * * * * *
4064954 CTCGGCTTACGCATCCGTCCTTCTGGTCGACTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTT
326 CACGACTTACGCATCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGCTTGACTT
* * *
4065019 AAGCATACGGAGTTCATTCCCAGTCTAAGAATACGGAGTTCATTCCCAGTCTAAGATCACACGGG
391 AAGCATACAGAGTTCATTCCCAGTCTAAGAATACGGAGCTCATTCCCAGTCTAAGATCAAACGGG
** * * * *
4065084 ACAGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCCCCGG
456 ACAGAGGGTTACGACAGCACATACTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCCCCGG
* * * * * *
4065149 GGCACTATCGCCGGGGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCAATCGGGGG
521 GACACCATCGCCGGAGCATCGCCGGAGAACCTAACCGGCGGCATTGGGGTTCCGACAATCGGGGG
*
4065214 GGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
586 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * ** *
4065279 ATCCCTCATCAAACCTCGTGAACTTACAACCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCT
651 ATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAACATTTGAGACTTTACAGGTTTGCT
* *
4065344 GCTAGTAGCCATTAAAGTGTCTAAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACA
716 GCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
4065409 CTTCAAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGGTCCGAACCGC
781 CTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGGTCCGAACCGC
* * *
4065470 AAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTTGTCTTGCCATAAAACTTCAGGTGAAGG
1 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGG
* *
4065535 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAG-AGAAATATGAAG
66 CTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCA-AGCAGAAATATGAAA
* *
4065599 ATGTGCCAAAACCCACCTACCACC-CTATCGATCCACGGCTTGCAAATCCCGTCTCTCTGGCCGG
130 ATGTACCAAAACCCACCTACCACCGC-ATCGATCCACGGCTTGCAAATCCCGTCTCTCTGGCCAG
*
4065663 CGTAGTGCCCCCCGCCCGC-CTGCTC-TTTTCGTCGGTTGG-TGTAGGCATACGGAGTTCATTCC
194 CATAGTG---CCCGCCCGCTC-GCTCGTTTT-GTCGGTTGGCT-TAGGCATACGGAGTTCATTCC
* * *
4065725 TAGTCTAAGATTGGACCAG-A-TCGAGGGTTGCAGCAACAGGATC-AGCAGCATGCAGAGGGGGA
253 TAGTCTAAGATCGGACC-GCACT-GAGGGTTGCAGCAACAGGATCGA-CAGCACGCAGAGGAGGA
* *
4065787 CCCGACCGATCCACGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTC
315 CCCGACCGATCCACGACTTACGCAT-CCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTC
* **
4065852 GTGGCTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCTTACGGAGCTCATTCCCAGTCTA
379 GTGGCTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGAATACGGAGCTCATTCCCAGTCTA
* * * * *
4065917 ATATCAAA-GCGGACCGAGGGTTACGATAGCACATACTAGGCTCGGGCATGTGCTGGTGCTGCAT
444 AGATCAAACG-GGACAGAGGGTTACGACAGCACATACTAGGCTCGAGCATGTGCTGGTGCCGCAT
** *
4065981 TTTTCTTCGTCGGGACACCATCGTCGGAGCATCGCCGGAGAACCTAACCGGCGGCATTGGGGTTC
508 TTTTCTTCCCCGGGACACCATCGCCGGAGCATCGCCGGAGAACCTAACCGGCGGCATTGGGGTTC
*
4066046 CGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
573 CGACAATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* *
4066111 ATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-ACCTTCTTAAAGAACATTTGAGAC
638 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACC-CCTTAAAGAACATTTGAGAC
*
4066175 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
702 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCA
*
4066240 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
767 CAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
4066304 ATCACGTCTA
Statistics
Matches: 745, Mismatches: 75, Indels: 24
0.88 0.09 0.03
Matches are distributed among these distances:
840 1 0.00
841 179 0.24
842 1 0.00
843 8 0.01
844 117 0.16
845 439 0.59
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (841 bp):
AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGG
CTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAAA
TGTACCAAAACCCACCTACCACCGCATCGATCCACGGCTTGCAAATCCCGTCTCTCTGGCCAGCA
TAGTGCCCGCCCGCTCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAA
GATCGGACCGCACTGAGGGTTGCAGCAACAGGATCGACAGCACGCAGAGGAGGACCCGACCGATC
CACGACTTACGCATCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGCTTGACTT
AAGCATACAGAGTTCATTCCCAGTCTAAGAATACGGAGCTCATTCCCAGTCTAAGATCAAACGGG
ACAGAGGGTTACGACAGCACATACTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCCCCGG
GACACCATCGCCGGAGCATCGCCGGAGAACCTAACCGGCGGCATTGGGGTTCCGACAATCGGGGG
GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
ATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAACATTTGAGACTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGGTCCGAACCGC
Found at i:4067283 original size:719 final size:710
Alignment explanation
Indices: 4065961--4067350 Score: 2158
Period size: 719 Copynumber: 1.9 Consensus size: 710
4065951 ACTAGGCTCG
*
4065961 GGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGACACCATCGTCGGAGCATCGCCGGAGAACCT
1 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCGTCGGAGCATCGCCGGAGAACCT
* * * * *
4066026 AACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
66 AACCGACGGCATTGGGGTTCCGACCATCGGGGGGGCCGGGGGGTGTGCACACATGAAGTGCGAAG
* * **
4066091 GGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTT
131 GATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
4066156 CTTAAAGAACATTTGAGACTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
196 CTTAAAGAACATTTGAGACTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
4066221 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
261 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
4066286 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCAAATCTCCTTCCGAAAAAATTTT
326 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCGAAAATCGCCTTCCGAAAAAATTTT
** * ** * *
4066351 AAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATTGAAAACGAGTCGTCTTGCCAT
391 AAAAAATCCCGAACCGGAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCAC
** **
4066416 GAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCGTTAAAAATGGCATTGGC
456 GAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
4066481 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCAACGGCTTGTGCATCC
521 ACGCAGAAATATGAAAATGTGCCTAAACCCACCTACCAACCTATCGATCAACGGCTTGCGCATCC
* *
4066546 CGTCTCTCTGGTCGGCATAGTGCCAGCCCGCCCGCCCGCCCGATTATTTCGTCGGTTCACTTAGC
586 CGTCTCTCTGGCCGGCATAGT----GCCCGCCCGCCCGCCCG----TTTCATCGGTTCACTTAGC
4066611 CATACAGAGTTCATTCCCAGTCTAAGATCAGATTGGACAGAGGATTGGGGCAGCACATGCTGGGT
643 CATACAGAGTTCATTCCCAGTCTAAGATCAGATTGGACAGAGGATTGGGGCAGCACATGCTGGGT
4066676 TCT
708 TCT
*
4066679 GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGCG-CACCATCGTCGGAGCATCGCCGGAGAACC
1 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG-GACACCATCGTCGGAGCATCGCCGGAGAACC
* * *
4066743 TGACCGATGGCATTGGGGTTCCGACCATC-GGGGGGCCGGGGGGGGTGTGCACACTTGAAGTGCG
65 TAACCGACGGCATTGGGGTTCCGACCATCGGGGGGGCC--GGGGGGTGTGCACACATGAAGTGCG
4066807 AAGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
128 AAGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
4066872 CCCCTTAAAGAGCATTTTAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
193 CCCCTTAAAGAACATTTGAGACTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
4066937 GGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTGTG
258 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
4067002 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTTGGGCGAAAAT-GCCTTCCTAAAAAA
323 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAG-TTTGGGCGAAAATCGCCTTCCGAAAAAA
*
4067066 TTTTAAAAAATCCCGAACCGGAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCATCTTG
387 TTTTAAAAAATCCCGAACCGGAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTG
4067131 CCACGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
452 CCACGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
4067196 TGGCACGTAGAAATATGAAAATGTTCCTAAACCGACCTA-CAACCATATCGATCCACGGCTTGCG
517 TGGCACGCAGAAATATGAAAATGTGCCTAAACCCACCTACCAACC-TATCGATCAACGGCTTGCG
* * * ** *
4067260 CATCCCGTCTCTTTGGCCGGCATAGTGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCAT
581 CATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGTTTCATCGGTTCACTTAGCCAT
*
4067325 ACGGAGTTCATTCCCAGTCTAAGATC
646 ACAGAGTTCATTCCCAGTCTAAGATC
4067351 GGACCGGACC
Statistics
Matches: 614, Mismatches: 53, Indels: 17
0.90 0.08 0.02
Matches are distributed among these distances:
711 43 0.07
715 15 0.02
717 8 0.01
718 90 0.15
719 447 0.73
720 11 0.02
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (710 bp):
GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCGTCGGAGCATCGCCGGAGAACCT
AACCGACGGCATTGGGGTTCCGACCATCGGGGGGGCCGGGGGGTGTGCACACATGAAGTGCGAAG
GATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAACATTTGAGACTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCGAAAATCGCCTTCCGAAAAAATTTT
AAAAAATCCCGAACCGGAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCAC
GAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACGCAGAAATATGAAAATGTGCCTAAACCCACCTACCAACCTATCGATCAACGGCTTGCGCATCC
CGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGTTTCATCGGTTCACTTAGCCATACAGA
GTTCATTCCCAGTCTAAGATCAGATTGGACAGAGGATTGGGGCAGCACATGCTGGGTTCT
Found at i:4067974 original size:825 final size:823
Alignment explanation
Indices: 4066736--4068328 Score: 2354
Period size: 825 Copynumber: 1.9 Consensus size: 823
4066726 AGCATCGCCG
* * **
4066736 GAGAACCTGACCGATGGCATTGGGGTTCCGACCATCGGGGGGCCGGGGGGGGTGTGCACACTTGA
1 GAGAACCTAACCAATGGCATTGGGGTTCCGACCATCGGGGGGCCGGGGGGGGTGTGCACAAATGA
* * *
4066801 AGTGCGAAGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
66 AGTGCGAAGGATGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTAGAGAAC
* *
4066866 TCACACCCCCTTAAAGAGCATTTTAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
131 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTATCTG
* *
4066931 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTT
196 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATT
**
4066996 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTTGGGCGAAAATGCCTTCCTA
261 TTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTTGGGCGAAAATGCCTTCCTA
* *
4067061 AAAAATTTTAAAAAATCCCGAACCGGAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCA
326 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCA
*
4067126 TCTTGCCACGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAAT
391 TCTTGCCACGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAACCCATAAAAAT
* * **
4067191 GGCATTGGCACGTAGAAATATGAAAATGTTCCTAAACCGACCTACAACCATATCGATCCACGGCT
456 GGCAGTGGCACGAAGAAATATGAAAATGTGACTAAACCGACCTACAACCATATCGATCCACGGCT
* *
4067256 TGCGCATCCCGTCTCTTTGGCCGGCATAGTGCCCGCCCGTCC-GCTCGTTTCATCGGTTGGCTTA
521 TGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCAGCCCG-CCTGCTCGTTTCATCGGTTGGCTTA
** *
4067320 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGTAGGATCGAC
585 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCAAGGGTTGCGACAGTAGGATCGAC
* * * * *
4067385 AACACGCAGAGGGGGACCTGATCGATCCTCGACTTATGCATTCCATCCCTCTGGCC-GACTGAGC
650 AACACACAGAGGGGGACCCGATCGATCCTCGACTTACGCATCCCACCCCTCTGGCCAG-CTGAGC
* * * *
4067449 GCCCGCACGCTCGTTTCATGGGTTGACATAGGCATATGGAGTTCATTTCGAGTCTAAGATTGGAC
714 CCCCGCACGCTCATTTCATGGGTTGACATAGGCATACGGAGTTCATTTCCAGTCTAAGATTGGAC
4067514 CGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATTACCA
779 CGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATTACCA
* * **
4067559 GAGAACCTAACCAATGGCATTGGGGTTCCGGCGATCGGGGGGGCCGTGGGGGGGTGTGTGCAAAT
1 GAGAACCTAACCAATGGCATTGGGGTTCCGACCATC-GGGGGGCCG-GGGGGGGTGTGCACAAAT
* *
4067624 GATA-TGCGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTAGAG
64 GA-AGTGCGAAGGATGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTAGAG
* * *
4067688 AACTCACACCCCCTTAAAGAGCATTTGAGTTTTTACAGGTTTGCTGCCAGTATCCATTAAAGTAT
128 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTAT
*
4067753 TTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
193 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* *
4067818 ATTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTAT-GGCTAAACCT-CCT
258 ATTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTT-TGGGCGAAA-ATGCCT
* * * *
4067881 T-CTGAAACAATTTTAAAAAATCCCGAACTGCAAAAAGGTTT-GAAAATCATGAAAAATAGAAAA
321 TCCT-AAAAAATTTTAAAAAATCCCGAACCGCAAAAA-GTTTCAAAAATCATGAAAAATAAAAAA
* *
4067944 CGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCA
384 CGAGTCATCTTGCCACGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAACCCA
* * * *
4068009 TAAAAATGGCAGTGGCACGAAGAAATATGAAGATGTGACTAAACCTACCTACCACCCTATCGATC
449 TAAAAATGGCAGTGGCACGAAGAAATATGAAAATGTGACTAAACCGACCTACAACCATATCGATC
* * * * *
4068074 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTTCTAGCCCGCCTGCTCGTTTCGTTGGTT
514 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCAGCCCGCCTGCTCGTTTCATCGGTT
* * ** * * *
4068139 TGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGTTCAAACCGAGGGTTGCTATAGTAGG
579 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCAAGGGTTGCGACAGTAGG
** * * * * * *
4068204 ATCGGTAGCACACAGAGGGGTACCCGGTTGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCAGC
644 ATCGACAACACACAGAGGGGGACCCGATCGATCCTCGACTTACGCATCCCACCCCTCTGGCCAGC
**
4068269 TGAGCCCCCGCACGCTCATTTCATGGGTTGAGTTAGGCATACGGAGTTCATTTCCAGTCT
709 TGAGCCCCCGCACGCTCATTTCATGGGTTGACATAGGCATACGGAGTTCATTTCCAGTCT
4068329 CAGCATATGC
Statistics
Matches: 683, Mismatches: 78, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
823 32 0.05
824 13 0.02
825 630 0.92
826 8 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (823 bp):
GAGAACCTAACCAATGGCATTGGGGTTCCGACCATCGGGGGGCCGGGGGGGGTGTGCACAAATGA
AGTGCGAAGGATGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTAGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTATCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATT
TTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTTGGGCGAAAATGCCTTCCTA
AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCA
TCTTGCCACGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAACCCATAAAAAT
GGCAGTGGCACGAAGAAATATGAAAATGTGACTAAACCGACCTACAACCATATCGATCCACGGCT
TGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCAGCCCGCCTGCTCGTTTCATCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCAAGGGTTGCGACAGTAGGATCGACA
ACACACAGAGGGGGACCCGATCGATCCTCGACTTACGCATCCCACCCCTCTGGCCAGCTGAGCCC
CCGCACGCTCATTTCATGGGTTGACATAGGCATACGGAGTTCATTTCCAGTCTAAGATTGGACCG
GACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATTACCA
Found at i:4068335 original size:26 final size:26
Alignment explanation
Indices: 4068305--4068354 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
4068295 GTTGAGTTAG
* *
4068305 GCATACGGAGTTCATTTCCAGTCTCA
1 GCATACGCAGTTCATTCCCAGTCTCA
*
4068331 GCATATGCAGTTCATTCCCAGTCT
1 GCATACGCAGTTCATTCCCAGTCT
4068355 AATATCGGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.22, C:0.28, G:0.18, T:0.32
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTCA
Found at i:4068837 original size:27 final size:27
Alignment explanation
Indices: 4068781--4068839 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
4068771 ATCCTTTCGA
* * *
4068781 AAAATTTTTAAAAAATCCTGAAACACG
1 AAAATTTTTAAAAAATCATGAAAAAAG
*
4068808 AAAATTTTT-GAAAATCATGAAAAATAG
1 AAAATTTTTAAAAAATCATGAAAAA-AG
4068835 AAAAT
1 AAAAT
4068840 GAGTCGTCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 12 0.44
27 15 0.56
ACGTcount: A:0.56, C:0.08, G:0.08, T:0.27
Consensus pattern (27 bp):
AAAATTTTTAAAAAATCATGAAAAAAG
Found at i:4069239 original size:26 final size:26
Alignment explanation
Indices: 4069203--4069255 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4069193 GTTGACTTAG
4069203 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
* *
4069229 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
4069255 G
1 G
4069256 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:4070380 original size:26 final size:26
Alignment explanation
Indices: 4070344--4070422 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
4070334 GTTGACTTAG
*
4070344 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4070370 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
4070396 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4070422 G
1 G
4070423 ATTGGATCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4071144 original size:26 final size:26
Alignment explanation
Indices: 4071115--4071165 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
4071105 GTTGGCTTAG
4071115 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4071141 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
4071166 TGATCGGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4071797 original size:743 final size:741
Alignment explanation
Indices: 4070370--4071880 Score: 2269
Period size: 743 Copynumber: 2.0 Consensus size: 741
4070360 CCTAGTCTAA
* * *
4070370 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGATCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * *
4070435 CGAGGGTTACGGCCACAGATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCATCGCGG
66 CGAGGGTTACGGCCACACATGCTGAGCTCGGGCATGTGCTGGTGCCGCAATTTTCTTCATCGCGG
* * * * * * * * **
4070500 CACCATTGTCGGAGCATCACCGGAAAACCTGACCGATGGCCTTGGGGTTTCGACGATCGGGGGGC
131 CACCATCGCCGGAGCATCACCGAAAAACCTGACCGACGGCATTGGCGTTCCGACAATCGGAAGGC
4070565 CGAGAGGGGTGTGAGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
196 CGAGAGGGGTGTGAGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
4070630 TCCCTCATCAAACCTTGAGATCTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
261 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
4070695 CCAGTAGCCATTAAAGTGTCCGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
326 CCAGTAGCCATTAAAGTGTCCGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * *
4070760 TTCGATTTTTTAGCTAAATTTTTTTGTGCATGACAACAAAAATACAAGGATCACGTCTATCAAGT
391 TTCAAGTTTTTAGCTAAATTTTTTTGTGAATGACAAAAAAAATACAAGGATCACGTCTACCAAGT
* * * * *
4070825 TTGGGGCCAAAAATCCTTTTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAACC
456 TTGGGGCCAAAAACCCCTTCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAACC
* * * *
4070890 ATGAAAAAAAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCTTTGTA
521 ATGAAAAAAAAAAAACGAGTCATCTTGCCATGAAACATAACGTGAAGGCTTAAGGGACCATTGTA
**
4070955 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCA
586 TGAATTTACAAGAAATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCA
* *
4071020 ACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
651 ACCACCCTATCGATCCACAGCTTACGCATCCCGTCTCTCTGGCAGACGTAGTGCCCGCCCGCCCG
*
4071085 TCCGCATGCTCATTTCGTGGGTTGGCTTAG
716 --C-C-TGCTCATTTCGTCGGTTGGCTTAG
*
4071115 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTATGATCGGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * *
4071180 CGAGGGTTGCGG-CAGCACATGCTGAGCTCGGGCATGTGCTGGTGCCGCAATTTTCTTCGTCGGG
66 CGAGGGTTACGGCCA-CACATGCTGAGCTCGGGCATGTGCTGGTGCCGCAATTTTCTTCATCGCG
** *
4071244 GCACCATCGCCGGAGCATCGTCGAAAAACCTGACCGACGGCATTGGCGTTCCGGCAATCCGGAAG
130 GCACCATCGCCGGAGCATCACCGAAAAACCTGACCGACGGCATTGGCGTTCCGACAAT-CGGAAG
* * * *
4071309 GTCG-G-GGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGTCCGTTATATTGGCCCCC
194 GCCGAGAGGGGTGTGAGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
4071372 TATCCCTCATCAAA-CTCGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGC
259 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
4071436 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
324 TGCCAGTAGCCATTAAAGTGTCCGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
4071501 ACTTCAAGTTTTTAGCTGAATTTTTTTGTGAATGCCAAAAAAAATACAAGTATCATGTCTACCAA
389 ACTTCAAGTTTTTAGCTAAATTTTTTTGTGAATGACAAAAAAAATACAAGGATCACGTCTACCAA
*
4071566 GTTTGGGGCC-AAAACCCCTTCGAACAAAATTTTAAAAAATCCCAAACCGCAAAAGGTTTCAAAA
454 GTTTGGGGCCAAAAACCCCTTCGAA-AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAA
* * * *
4071630 ATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACATAATGTGAAGGCTTCAA-GGACCAT
518 ACCATGAAAAAAAAAAAACGAGTCATCTTGCCATGAAACATAACGTGAAGGCTT-AAGGGACCAT
*
4071694 TGTATGAATTTAGAAGAAATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
582 TGTATGAATTTACAAGAAATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
** * * * *
4071759 ACGTACCACCCTATCGATTCACAGCTTGCGCATCCCGTCTCTCTGGCAGGCGTAGTGGCCGCCCG
647 ACCAACCACCCTATCGATCCACAGCTTACGCATCCCGTCTCTCTGGCAGACGTAGTGCCCGCCCG
* *
4071824 CCCGCCTGCTCGTTTTGTCGGTTGGCTTAG
712 CCCGCCTGCTCATTTCGTCGGTTGGCTTAG
4071854 GCATACGGAGTTCATTCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
4071881 ATCAGATCGG
Statistics
Matches: 691, Mismatches: 71, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
739 48 0.07
740 1 0.00
741 1 0.00
742 11 0.02
743 387 0.56
744 73 0.11
745 163 0.24
746 7 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (741 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
CGAGGGTTACGGCCACACATGCTGAGCTCGGGCATGTGCTGGTGCCGCAATTTTCTTCATCGCGG
CACCATCGCCGGAGCATCACCGAAAAACCTGACCGACGGCATTGGCGTTCCGACAATCGGAAGGC
CGAGAGGGGTGTGAGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
CCAGTAGCCATTAAAGTGTCCGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
TTCAAGTTTTTAGCTAAATTTTTTTGTGAATGACAAAAAAAATACAAGGATCACGTCTACCAAGT
TTGGGGCCAAAAACCCCTTCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAACC
ATGAAAAAAAAAAAACGAGTCATCTTGCCATGAAACATAACGTGAAGGCTTAAGGGACCATTGTA
TGAATTTACAAGAAATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCA
ACCACCCTATCGATCCACAGCTTACGCATCCCGTCTCTCTGGCAGACGTAGTGCCCGCCCGCCCG
CCTGCTCATTTCGTCGGTTGGCTTAG
Found at i:4072047 original size:26 final size:26
Alignment explanation
Indices: 4072015--4072065 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
4072005 TGACTTAGGG
4072015 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
4072041 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
4072066 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:4072344 original size:226 final size:226
Alignment explanation
Indices: 4071956--4072366 Score: 617
Period size: 226 Copynumber: 1.8 Consensus size: 226
4071946 CCGACTTACC
* *
4071956 CGTCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATTCGTTGACTTAGGGATACGG
1 CGTCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCATGCGTTGACTTAGGGATACGG
*
4072021 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTT
66 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTT
* * * * * * * *
4072086 GCGGCAGCACATGTTGGGCTCGATCGTGTGCTGGTGCTGCATTTTTCTTCACCGGAGCATCGTCG
131 GCGACAGCAAATGCTAGGCTCGAGCATGTGCTGCTACTGCATTTTTCTTCACCGGAGCATCGTCG
4072151 GAGAACCTGACTGACCGATCCTCGGCTTGTG
196 GAGAACCTGACTGACCGATCCTCGGCTTGTG
* * * * *
4072182 CGTCCCGCCCCTCTGGCCGACTGAGCACCTGCACGCTCGTTTCATGGGTTGACTTTGGGATATGG
1 CGTCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCATGCGTTGACTTAGGGATACGG
**
4072247 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTTAGTCTAAGAGT-GGACCAGACCAAGGGT
66 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCGGACCAGACCAAGGGT
* * *
4072311 TGCGACAGTAAATGCTAGGCTCGGGCATGTGCTGCTACTGCATTTTTCTTCGCCGG
130 TGCGACAGCAAATGCTAGGCTCGAGCATGTGCTGCTACTGCATTTTTCTTCACCGG
4072367 GCCACCATCA
Statistics
Matches: 163, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
226 162 0.99
227 1 0.01
ACGTcount: A:0.18, C:0.28, G:0.27, T:0.26
Consensus pattern (226 bp):
CGTCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCATGCGTTGACTTAGGGATACGG
AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTT
GCGACAGCAAATGCTAGGCTCGAGCATGTGCTGCTACTGCATTTTTCTTCACCGGAGCATCGTCG
GAGAACCTGACTGACCGATCCTCGGCTTGTG
Found at i:4073172 original size:26 final size:26
Alignment explanation
Indices: 4073136--4073188 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4073126 GTTGACTTAG
4073136 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
4073162 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
4073188 G
1 G
4073189 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:4074076 original size:26 final size:26
Alignment explanation
Indices: 4074039--4074091 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
4074029 GTTGACTGAG
*
4074039 GCATACAGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4074065 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
4074091 G
1 G
4074092 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4074978 original size:26 final size:26
Alignment explanation
Indices: 4074942--4074994 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4074932 CTTGACTTAG
4074942 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4074968 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4074994 G
1 G
4074995 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4075873 original size:26 final size:26
Alignment explanation
Indices: 4075844--4075896 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4075834 GTTGACTTAG
*
4075844 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4075870 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4075896 G
1 G
4075897 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4076250 original size:902 final size:900
Alignment explanation
Indices: 4072167--4077660 Score: 7198
Period size: 903 Copynumber: 6.1 Consensus size: 900
4072157 CTGACTGACC
* * * * * *
4072167 GATCCTCGGCTTGTGCGTCCCGCCCCTCTGGCCGACTGAGCACCTGCACGCTCGTTTCATGGGTT
1 GATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * **
4072232 GACTTTGGGATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTTAGTCTAAGAGT-G
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCG
* * * * * * *
4072296 GACCAGACCAAGGGTTGCGACAGTAAATGCTAGGCTCGGGCATGTGCTGCTACTGCATTTTTCTT
130 GACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * * * **
4072361 CGCCGGGCCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGACATTAGGGTTCCGGTGAT
195 CGTCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGAT
* * * *
4072426 CGGGGCGGTCGGGGGGGGTGTGCGCACATTATGTGCGATGGGTGCTGGTACTTGGCTCTTATAAT
260 CGGGG-GG-C-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * * *
4072491 GGCCTCCTATCCTTCATCAAACCTTGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACA
322 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
4072556 GGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAAT
387 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
*
4072621 CTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACAT
452 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACAT
* * * *
4072686 CTACCAAGTTTGGGGCCAATACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
517 CTACCAAGTTT-GGACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTT
** * *
4072751 TCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAAGCTTAAGGG
581 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
4072816 ACCATTGCATGAATTTACAAACCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTA
646 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTA
*
4072881 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC-TC-CTCT--CCGACCGATA-T--
711 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-GCG-TAGTGC
* * * * * * *
4072939 -AG--TGCCCACCCGCTCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTCCTTTCCCAGTCT
774 CCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* ** ** *
4073001 AAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCAGTAGCACGCAGAGGGGGACCCGGCT
839 AAGATCAGACCAGACTGAGGGTTACGATAGCAGGAT-AGTAGCACGCAGAGGGGGACCCGACT
* ** * * *
4073064 GATCCCTGGCTTAAGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGATCTTTTCGTGGGTT
1 GATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
4073129 GACTTAGGCATACGGAGTTCACTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * ** * * * * *
4073194 ACCGGACCGAGGGTTACGGTAGCAGATGCTGGGCTCTGGAATGTACTGGTGCCGTATTTTTCTTC
131 ACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * * *
4073259 GTCGGGGCACCATCACCGGAGCAACACCGAAGAACCTGATCGGCGGCATT-GAGGTTCCGGCGAT
196 GTCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTAG-GGTTCCGACGAT
* *
4073323 CGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGG
260 C-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
4073388 CCCCGTATCCCACATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
324 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
4073453 TTTGCTGCCAGTATCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
389 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
4073518 TGTACACTTCGAGTTTATAGCTGAATTTTTTTGTGCAGGCCAACAAAAATACAAGGATCACGTCT
454 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCT
* * * * *
4073583 ACCAAGTTTGGGGCGAAAGCTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCCTAAAAAGTTTC
519 ACCAAGTTT-GGACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTC
*
4073648 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGAC
583 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
**
4073713 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGCAATATGAAGATGTGCCTAAA
648 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAA
* * * * * *
4073778 CCCACCTACCACCCAATTGATCCACGGCTTGCGCATCCCGTCTCTTTGGTCGGCGTAGTGCCGGT
713 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* *
4073843 CCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTCAGA
778 CCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * ** * *
4073908 TCAGACCGGATTGAGGGTCACAAAAGCAGGATAGGCAGCACATAGAGGGGCACCCG-GT
843 TCAGACCAGACTGAGGGTTACGATAGCAGGATA-GTAGCACGCAGAGGGGGACCCGACT
* * * * * * *
4073966 CGATCCCTGGCTTGAGCATCCCGCCCCTCTGGCCGACTGTGTGCCCGCACGCTCGTTACATGGGT
1 -GATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * *
4074031 TGACTGAGGCATACAGAGTTCATTGCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCG
65 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* ** * * *
4074096 AACC-GAATTGAGGGTTGC-AGCAGCACATGTTGGGCTGGGGCATGTGCTGGTGCCACATTTTTC
130 GACCAG-ACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * *
4074159 TTCGTCGGGGCACCATCAACAGAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTTCCGACG
193 TTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACG
* *
4074224 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTGCTTGGCCCTTATATT
258 ATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
*
4074289 AGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
322 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
4074354 GGTTTGCTGGCCA-TAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
387 GGTTTGCT-GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
*
4074418 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACA
451 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACA
* * *
4074483 TCTACCAAGTTTGGAGCCAAAAGTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGT
516 TCTACCAAGTTTGGA-CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGT
** * * ** *
4074548 TTTGAAAATCGTGAAAAATA-AAAACCAAGTTATCTTGCCATGAAACTTCACGTGAAGGCTTAAC
580 TTCAAAAATCATGAAAAATAGAAAA-CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
*
4074612 GGACCATTGTATGAATTTCCAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCC
644 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCC
* * * * *
4074677 TAAACCCACCTACCACCCTATCAATCCACGGCTTACGCTTCCCGTCTCTCTGGTCGGGGTAGTGC
709 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* * *
4074742 TCGCCCGCCCGCCCGCTCGCTCGTTTCGACGGTTGGCTTAGGCATGCGGAGTTCATTCCCAGTCT
774 CCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * ** * * ** * *
4074807 AAGATTAGACTAGACTGAGGGTTGTGGTAGCAGGATCGGTAGCACATAGAGGGGGACCCGGCC
839 AAGATCAGACCAGACTGAGGGTTACGATAGCAGGAT-AGTAGCACGCAGAGGGGGACCCGACT
* * * * * *
4074870 GATCCACGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTTGTTGCTT
1 GATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
4074935 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* *
4075000 ACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTT
131 ACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
** * * * * * *
4075065 G-CTGGGGCACCATTGTCGGAGTATCGCCGGAGAACCTGGCCGACGACAATGGGGTTCCGACGAT
196 GTC-GGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGAT
* *
4075129 CTGGGGGGTCGGGGGGGCTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATT
260 C-GGGGGG-CCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * * *** *
4075194 GGCCCCTTATCCCTCATCAAACCTTGAGAACACACGGTCCCTTAAAGAGCATTTGAGATTTTATA
322 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
4075259 GGTTTGTTG-CTGTAGCCATTAAAGTGTCT-AGAATGGGGACACTTTTTTCAAATGGTCACAAAA
387 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
4075322 TCTTGTACACTTTGAGTTTGTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
451 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACA
* * *
4075387 TCTACCAAGTTTGGCACTAAAACTCCTTCCAAAAAAAGTTTAAAAAATCTCGAACCATAAAAAGT
516 TCTACCAAGTTTGG-ACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGT
* * * * * *
4075452 TTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGTCATGAAACTGCACGTGAAGGCTTACGG
580 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * * *
4075517 GACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATATACCT
645 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCT
* * * ** * *
4075582 AAACACACCAACCACCCTATCGATCAACGGCTTGCGCATCCCACCTCTTTGGCCGACGTAGTGCC
710 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* * * *
4075647 CGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAATCTA
775 CGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * ** * * *
4075712 AGATCGGACCAAAC-CA-AGTTACGGCAGCAGGATTGTTAGCACGGAGAGGGGGACCTGACT
840 AGATCAGACCAGACTGAGGGTTACGATAGCAGGATAG-TAGCACGCAGAGGGGGACCCGACT
* *
4075772 GATCCCCGGCTTGTGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
4075837 GACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * * * **
4075902 ACCAAACCGAGGGTTGTGGCAGCTCATGCTGGGCTCGGGCATATGCTGGCGCCAAATTTTTCTTC
131 ACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * *
4075967 GTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATC
196 GTCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATC
* * * * *
4076032 GGGAGGGCCAGGGGGGTGGGCGGAGATGATGTGCGATGGCTGCTGGTGCTTGGCCCTTATATTGG
261 GGG-GGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
*
4076097 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAGAGG
324 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
4076162 TTTGCTGCTAGTAGCCATTAAAGTGT-TCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
389 TTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * *
4076226 TTATATACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-ACAAAACACAAGGATCACAT
453 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA-AAAATACAAGGATCACAT
* * * *
4076290 CTACCCAGTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCTAACCGTAAAAAGTTT
517 CTACCAAGTTTGGACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTT
* *
4076355 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGTCTTAAGGGA
582 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*** *
4076420 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAGAAATATGAAGATGTGCCTAA
647 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAA
*
4076485 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCG
712 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * * * *
4076550 CCCGTCCGTCCGCCTGCCCGCTCGATCCTTTCATCGGTTGGCTTAGGCATATGGATTTCATTCCC
777 --C--CCG--C-CC-GCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * ** *
4076615 AGTCTAAGATCGGACCTGACCAAGGGTTACGATAGCAGGATCAGTAGCACGCAGA-TGGG----G
834 AGTCTAAGATCAGACCAGACTGAGGGTTACGATAGCAGGAT-AGTAGCACGCAGAGGGGGACCCG
4076675 AC-
898 ACT
* * * *
4076677 --T---CAGCTTATGCATCCCGTCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * *
4076737 GACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * *
4076802 ACCGGACCGAGTGTTGCAACAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
131 ACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
** * * *
4076867 ACCGGGGCA-C--CAT-----CAT---CGGAGAACCTGACCAGCGGCATTAGGGTTTCGACGATA
196 GTCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATC
*
4076921 GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTC
261 GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * *
4076986 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCGTAATGAGCATTTGAGATTTTACAGGTT
326 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
4077051 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTG
391 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * ***
4077116 TACACTTCGATTTTTTAGCTGAATTTTTTTGGGCATGCCAA-AAAAATACAAGGATCTTGTCTAC
456 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTAC
* * **
4077180 CATGTTTGGAGCCAAAACTCCTT-CAGAAAAAATTTTAAAAAATCTCAAACTATAAAAAGTTTCA
521 CAAGTTTGGA-CCAAAACTCCTTCCA-AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCA
* *
4077244 AAAATCATGAAAAATAGAAAATGAGTCTTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
584 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* ** *
4077309 ATTGTATGAATTTACAAGCCATAAAAGTGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
649 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAAC
* * * *
4077374 CCACCTACCACCCTATCGATCCACGGCTTGCACATCCCATCTCTCTGGCCGGCGTAGTGCTCGTC
714 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * * * * * * *
4077439 CGTCCACCTGTTCGCTCGTTTCATCGGTTGGCTTAGGCGTACGGAGTTGATTCCCAGTCTTAGAT
779 CGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
** * * * *
4077504 TGGACCAGACTGAGGGTTACAATAGCAGGATTGACAGCACGCAGAGGGAGACCCGA-T
844 CAGACCAGACTGAGGGTTACGATAGCAGGATAG-TAGCACGCAGAGGGGGACCCGACT
* * * *
4077561 CGATCCCTGGCTTGTGCATCTCGCCCCTCTGGCCGGCTGAGCACCCGCACCCTCGTTTCGTGGGT
1 -GATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
4077626 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
65 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
4077661 ATCGGATCAG
Statistics
Matches: 4035, Mismatches: 495, Indels: 141
0.86 0.11 0.03
Matches are distributed among these distances:
878 1 0.00
879 86 0.02
880 4 0.00
883 3 0.00
884 2 0.00
886 26 0.01
887 441 0.11
888 6 0.00
889 36 0.01
890 83 0.02
892 3 0.00
895 450 0.11
896 5 0.00
897 223 0.06
898 7 0.00
899 3 0.00
900 173 0.04
901 334 0.08
902 402 0.10
903 1118 0.28
904 415 0.10
905 118 0.03
906 3 0.00
907 1 0.00
908 2 0.00
909 61 0.02
910 4 0.00
911 24 0.01
912 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
ACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
GTCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATC
GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTAC
CAAGTTTGGACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAA
AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCC
ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
CCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
GACCAGACTGAGGGTTACGATAGCAGGATAGTAGCACGCAGAGGGGGACCCGACT
Found at i:4076780 original size:26 final size:26
Alignment explanation
Indices: 4076744--4076796 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4076734 GTTGACTTAG
4076744 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
4076770 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
4076796 G
1 G
4076797 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:4079490 original size:26 final size:26
Alignment explanation
Indices: 4079461--4079511 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
4079451 GTTGACTTAG
4079461 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4079487 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
4079512 TGATCGGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4080218 original size:26 final size:26
Alignment explanation
Indices: 4080189--4080239 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4080179 GTTGACTTAG
4080189 GCATACGGAGTTCAATACCAGTCTAA
1 GCATACGGAGTTCAATACCAGTCTAA
* *
4080215 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCAATACCAGTCTA
4080240 TGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAATACCAGTCTAA
Found at i:4080459 original size:728 final size:732
Alignment explanation
Indices: 4078745--4081632 Score: 4506
Period size: 728 Copynumber: 3.9 Consensus size: 732
4078735 GACTTAGGCC
* * * * * *
4078745 TACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGACGGTTGCAGCCA-CAGATGCTGGGCT
1 TACGGAGTTCATTCCCAGTCTATGATCGGACCAGACCGAGGGTTGC-GGCAGCACATGCTGAGCT
* * * *
4078809 CGGGCATGTGCTGGTGTCACATTTTTCTTCGTCTGGGCACCATTGTTGGAGCATCGCCGGAGAAC
65 CGGGAATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCA-C----------CATCGCCGGAGAAC
* ** * * * *
4078874 CTGA-TCGGTGGCATTGGGGTTCTGGTGATCGGGGGGCCGAGAGGGGTGTGCGCACATGATGTGC
119 TTGACTCGACGGCATTGGGGTTCCGGTAATCGGGGGGTCG-GGGGGGTGTGCGCACATGATGTGC
** * * * *
4078938 GGCGGGTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTTGAGATCTCACA
183 GATGGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTCGAGAACTCACA
* * *
4079003 CCCCTTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
247 CCCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
4079068 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTAAATTTTTTTGT
312 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGT
* *
4079133 GCATGCCAACAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAAATACTGTCGAAAAAA
377 GCATGCCAACAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAAATCCTGTCAAAAAAA
* *
4079198 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAAC-AGGTCGTCTT
442 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGA-GTCGTCTT
*
4079262 GCCATGAAACTTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCA
506 GCCATGAAACTTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
4079327 TTGGCACGTAGAAATATGAAGATGAGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTACG
571 TTGGCACGTAGAAATATGAAGATGTGCCTAAA-CCACCAACCACCCTATCGATCCACGGCTTACG
4079392 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGTCCGCATGCTCGTTTCGTGGGTTGAC
635 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGTCCGCATGCTCGTTTCGTGGGTTGAC
4079457 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
700 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
4079490 TACGGAGTTCATTCCCAGTCTATGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGAGCTC
1 TACGGAGTTCATTCCCAGTCTATGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGAGCTC
* *
4079555 AGGAATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGCCGGAGAACTTGAC-CGACGG
66 GGGAATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCGCCGGAGAACTTGACTCGACGG
*
4079619 CATTGGGGTTCTGGTAATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
131 CATTGGGGTTCCGGTAATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
4079684 ACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACTCGAGAACTCACACCCCCTTAAAGAGC
196 ACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACTCGAGAACTCACACCCCCTTAAAGAGC
*
4079749 ACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGGGACACTTTTTTC
261 ACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
4079814 AAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
326 AAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* *
4079879 ATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAAATGCTGTCAAAAAAATTTTAAAAAATCTC
391 ATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAAATCCTGTCAAAAAAATTTTAAAAAATCCC
*
4079944 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAAACG-GTCGTCTTGCCATGAAACTTCA
456 GAACCGCAAAAAGTTTCAAAAATCATGAAAAAT-AAAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
4080008 TGTGAACGCTTAAGGGACCATTGTATGAATTTACGAGCCATAAAAATGGCATTGGCACGTAGAAA
520 CGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAA
4080073 TATGAAGATGTGCCTAAA-C-CC-ACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTG
585 TATGAAGATGTGCCTAAACCACCAACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTG
4080135 GCCGACGTAGTGCCCGCCCGCCTGTCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
650 GCCGACGTAGTGCCCGCCCGCCTGTCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* *
4080200 TCAATACCAGTCTAAGCA
715 TCATTCCCAGTCTAAGCA
4080218 TACGGAGTTCATTCCCAGTCTATGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGAGCTC
1 TACGGAGTTCATTCCCAGTCTATGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGAGCTC
4080283 GGGAATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCGCCGGAGAACTTGACT-GACGG
66 GGGAATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCGCCGGAGAACTTGACTCGACGG
*
4080347 CATTGGGGTTCCGGTAATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGGGATGGGTGCTGGT
131 CATTGGGGTTCCGGTAATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
4080412 ACTTGTCCCTTATATTGGCCCCCTATCCCACATCAAACTTGAGAACTCACACCCCCTTAAAGAGC
196 ACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACTCGAGAACTCACACCCCCTTAAAGAGC
*
4080477 ACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGGGACACTTTTTTC
261 ACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
4080542 AAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
326 AAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * *
4080607 ATACAAGGATCATGTCTATCAAGTTTGGGGCCAAAAACTCCTTTCAAAAAAATTTTAGAAAATCC
391 ATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAAA-TCCTGTCAAAAAAATTTTAAAAAATCC
* *
4080672 CGAACCGCAAAAAGTTTCAAAAAACATGAAAAATAAAAAACGAGTCCTCTTGCCATGAAACTTCA
455 CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCA
*
4080737 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAA
520 CGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAA
4080802 TATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCT
585 TATGAAGATGTGCCTAAA-CCACCAACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCT
* * * *
4080867 GGCTGACGTAGTGCCCGCCTGCCCGTCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAA
649 GGCCGACGTAGTGCCCGCCCGCCTGTCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
4080932 TTCATTCCCAGTCTAAGCA
714 TTCATTCCCAGTCTAAGCA
*
4080951 TACGGAGTTCATTCCCAGTCTATGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGAGCTC
1 TACGGAGTTCATTCCCAGTCTATGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGAGCTC
*
4081016 GGGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCACCAGAGAATT
66 GGGAATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCGCCGGAG-A--A-C-------T
* * * * *
4081081 TG-TTCGACGGCATTGAGGTTCCGGCAATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
120 TGACTCGACGGCATTGGGGTTCCGGTAATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGA
* * *
4081145 TAGGTGCTGGTACTTGTCCCTTATATTGGCCCCTTATCCCTTATCAAACTCGAGAACTCACACCC
185 TGGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACTCGAGAACTCACACCC
* * * *
4081210 CCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCTAGTAGCCATTAAAGTGTCTAAAATGGGG
250 CCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
4081275 ACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCA
315 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCA
* * * * **
4081340 AGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTAGGGCCAAAACCCCT-TCGAAAAAAATT
380 TGCCAACAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAAATCCTGTC-AAAAAAATT
* * * *
4081404 TTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATATTGCC
444 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCC
* * * **
4081469 ATGAAACTTCATGTGAAGGCTTCAA-GGACCATTGTATGAATTTAGAAGAAATAAAAATGGCATT
509 ATGAAACTTCACGTGAACGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * *
4081533 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGA-TC
573 GGCACGTAGAAATATGAAGATGTGCCTAAA-CCACCAACCACCCTATCGATCCACGGCTT-ACGC
* *
4081597 ATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCC
636 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
4081633 CGCCTGCTCG
Statistics
Matches: 2012, Mismatches: 105, Indels: 54
0.93 0.05 0.02
Matches are distributed among these distances:
728 548 0.27
729 158 0.08
730 1 0.00
731 1 0.00
732 350 0.17
733 307 0.15
734 48 0.02
736 1 0.00
737 1 0.00
742 2 0.00
743 218 0.11
744 290 0.14
745 87 0.04
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (732 bp):
TACGGAGTTCATTCCCAGTCTATGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGAGCTC
GGGAATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCGCCGGAGAACTTGACTCGACGG
CATTGGGGTTCCGGTAATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACTCGAGAACTCACACCCCCTTAAAGAGC
ACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
ATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAAATCCTGTCAAAAAAATTTTAAAAAATCCC
GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
ATGAAGATGTGCCTAAACCACCAACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGG
CCGACGTAGTGCCCGCCCGCCTGTCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
CATTCCCAGTCTAAGCA
Found at i:4080951 original size:26 final size:26
Alignment explanation
Indices: 4080922--4080972 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
4080912 GTTGACTTAG
4080922 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
*
4080948 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAATTCATTCCCAGTCTA
4080973 TGATCAGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:4081858 original size:26 final size:26
Alignment explanation
Indices: 4081822--4081872 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4081812 TGACTTAGGG
* *
4081822 ATACGGGGTTCATTCCTAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
4081848 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
4081873 ATCAGACGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:4082079 original size:26 final size:26
Alignment explanation
Indices: 4082049--4082099 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4082039 TGACTTTGGG
4082049 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
**
4082075 ATACGGAGTTCATTCTTAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
4082100 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:4082269 original size:226 final size:226
Alignment explanation
Indices: 4081747--4082400 Score: 867
Period size: 226 Copynumber: 2.9 Consensus size: 226
4081737 GGGACCCGAT
* * * * * * *
4081747 CGATCCCCGACTTACACGTCCCGCCCCTCTGACCGGTTGAGCGCCCGCACGCTCATTTCATTCGC
1 CGATCCCCGAATTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATTGGT
* * *
4081812 TGACTTAGGGATACGGGGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
66 TGACTTTGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * *
4081877 GACGGGACCAAGGGTTGCGGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCT
131 GACCGGACCAAGGGTTGC-GGCAGCACATGCTGGGCTCGGACATGTGCTGGTGCTGCATTTTTCT
* * * *
4081942 TCATCAGAACATCATCGGAGAACTTGACTGGC
195 TCACCGGAACATCATCGAAGAACCTGACTGGC
* ** ** *** * *
4081974 CGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGGATGCACGCTCGTTTCATGGGT
1 CGATCCCCGAATTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATTGGT
**
4082039 TGACTTTGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTTAGTCTAAGATCA
66 TGACTTTGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * *
4082104 GACCGGACCAAGGGTTGCGGTAGCACATGTTGGGCTCGGACATGTGCTGGTGTTGCATTTTTCTT
131 GACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGACATGTGCTGGTGCTGCATTTTTCTT
* *
4082169 CACCGGAGCATCATTGAAGAACCTGACTGGC
196 CACCGGAACATCATCGAAGAACCTGACTGGC
* **
4082200 TGATCCCCGAATTACGCATCTTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATTGGT
1 CGATCCCCGAATTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATTGGT
* *
4082265 TGACTTTGGGAAACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
66 TGACTTTGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
** * * * *
4082330 GACCGGACCAAGGGTTGCAACAGCACATGCTAGGCTTGGCCATGTGCTGCTGCTGCATTTTTCTT
131 GACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGACATGTGCTGGTGCTGCATTTTTCTT
*
4082395 CGCCGG
196 CACCGG
4082401 GCCACCATCA
Statistics
Matches: 366, Mismatches: 61, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
226 239 0.65
227 127 0.35
ACGTcount: A:0.19, C:0.28, G:0.27, T:0.26
Consensus pattern (226 bp):
CGATCCCCGAATTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATTGGT
TGACTTTGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
GACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGACATGTGCTGGTGCTGCATTTTTCTT
CACCGGAACATCATCGAAGAACCTGACTGGC
Found at i:4083194 original size:26 final size:26
Alignment explanation
Indices: 4083163--4083215 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4083153 GTTGACTTAG
4083163 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
* *
4083189 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
4083215 G
1 G
4083216 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:4084200 original size:905 final size:902
Alignment explanation
Indices: 4082222--4085793 Score: 4556
Period size: 890 Copynumber: 4.0 Consensus size: 902
4082212 TACGCATCTT
* * * * *
4082222 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATTGGTTGACTTTGGGAAACGGAGTTCA
1 GCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCA
* * *
4082287 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCAACA
66 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCA
* * * * ** * *
4082352 GCACATGCTAGGCTTGGCCATGTGCTGCTGCTGCATTTTTCTTCG-CCGGGCCACCATC-ACTGG
131 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGG-CACCATCGTCTGG
* ** * * ** * *
4082415 AGCATCGTCGGAGAACCTGATCGGTGGCATTGGGGTTCCAAAGATCGGGGCTGTCGGGGGGGTGT
195 AGCATCATCGGAGAACCTGA-CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGAGGGGTGT
* * * * * *
4082480 GCGCACATGACGTGTGATGGGTGCTGGTACTTGGCTCTTATAATGGCCTCCTATCCTTCATCAAA
259 GCGCACAAGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
4082545 CCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACT
324 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
4082610 AAAGCGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTTGAGTTTTTA
389 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* *
4082675 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAACGATCACGTCTACCAAGTTTGGGGCCAATA
454 GCTGAAATTTTTTGTGCATGCCAAAAAAAATACAACGATCACGTCTACCAAGTTTGGGGCCAAAA
* * *
4082740 CTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
519 CTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
* * *
4082805 AAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAA
584 AAACGAGTCGTCTTGCCATGAAACTTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
4082870 CCAT--AAA----ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
649 CCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * * *
4082929 ATCCACGGCTTGCGCATCCC-TC-CTCT--CC-G-GTCG-GTATAGTGCCCACCCGCCCGCTCAT
714 ATCCACGGCTTACGCATCCCGTCTCTCTGGCCAGCGTAGTGCA-ACTGCCGACCCGCCCGCTCGT
* * * * *
4082987 TTCGTCGGTTGGCTTAGGCATATGGAGTTGATTCCCAGTCTAAGATCAGACCAGA-TCGAGTGTT
778 TTCGACGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-AAGGGTT
* ** * * * *
4083051 GCGGCAGCAGGATCGGTAGCACCCAGAGGGGGACCCGGCTGATCC-CTGGCTTACGCATCCC
842 GCGGCAGCAGGATCGGCAGCACGTAGAGGGGAACCCGACCGATCCAC-GGCTTGCGCATCCC
* ** * *
4083112 GCCCCTCTGGCCGACTGAGCGTCCGCATACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
1 GCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCA
* * * ** *
4083177 CTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTA
66 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCA
** * * * ** *
4083242 GCACATGCTGGGCTCTAGAATGTACTGGTGTC-GTTTCTTTCCTCGTCAGGGCACCATCGTC-GG
131 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATT-TTTCTTCGTCAGGGCACCATCGTCTGG
* * * **
4083305 AGCATCATCGGAGAATCTGACAGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGAGACGTGT
195 AGCATCATCGGAGAACCTGAC-GACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGAGGGGTGT
* * * *
4083370 GTGCACAAGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCCCACATCAAA
259 GCGCACAAGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
*
4083435 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTATCCATT
324 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
4083500 AAAGTGTCTGAAATGGGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
389 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* *
4083565 GCTGAAATTTTTTGTGCATGCCAGAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAA
454 GCTGAAATTTTTTGTGCATGCCA-AAAAAAATACAACGATCACGTCTACCAAGTTTGGGGCCAAA
*
4083630 ACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAG
518 ACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
* *
4083695 AAAACGAGTCGTCTTGCCATGAAACTTCACGGGAAGGCTTAGGGGACAATTGTATGAATTTACAA
583 AAAACGAGTCGTCTTGCCATGAAACTTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *
4083760 GCCATAAAAATGGCATTGGCACACAGCAATATGAAGATGGGCCTAAACCCACCTACCACCCTATC
648 GCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* *
4083825 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCAACTGCCGGCCCGCCCGCTC
713 GATCCACGGCTTACGCATCCCGTCTCTCTGGCCAGCGTAGTG--CAACTGCCGACCCGCCCGCTC
* * * * * ** * *
4083890 GTTTCAACGGTTGGCTTAGCCATACGGAGTTTATTCCTAGTCTAAGATCGGACTGGATTGAGGGT
776 GTTTCGACGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGT
* * *
4083955 TGCGGCAGTAGGATCGGTAGCACGTAGAGGGGGACCCGACCGATCCACGGCTTGCGCATCCC
841 TGCGGCAGCAGGATCGGCAGCACGTAGAGGGGAACCCGACCGATCCACGGCTTGCGCATCCC
* * * *
4084017 GGCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATTGGTTGACTTAGTCATATGGAGTTCA
1 GCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCA
* *
4084082 TTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
66 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCA
* * * * * * *
4084147 GCACATGCTGGGTTCGGGCATGTGCTGGTTCCATATTTTTCTTTGTTAGGGCACCATCATC-AGA
131 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGTCTGGA
** * * *
4084211 GCATCGCCGGAGAACCTGGTCGATGGCATTGGGGTTCCGACGATCTGGGGGGCCGGAGGGGGTGT
196 GCATCATCGGAGAACCT-GACGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGA-GGGGTGT
* * *
4084276 GCGCACATGGTGTGTGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
259 GCGCACAAGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * ** * *
4084341 CGTTGAGAACTCATGCTCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
324 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
4084406 AAAGTGTTTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
389 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * *
4084471 GCTG-AATATTTTTGTGCATGCCAACAAAAATACAACGATCAAGTCCACCAAGTTTGGGGCC-AA
454 GCTGAAAT-TTTTTGTGCATGCCAAAAAAAATACAACGATCACGTCTACCAAGTTTGGGGCCAAA
* *
4084534 ACTCCTTCCGAAAAAATTTAAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
518 ACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
* *
4084599 AAAACGAGTCGTCTTGCCATGAAACTTCA-GGTGAAGGCTTAACGGACCATTGTATGAATTTCCA
583 AAAACGAGTCGTCTTGCCATGAAACTTCACGG-GAAGGCTTAAGGGACCATTGTATGAATTTACA
**
4084663 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
647 AGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * *
4084728 CGATCCACGGCTTACGCATCCTGTCTCTCTGGCCGGTGTAGTG---C--CCG-GCCGCCAGCTCG
712 CGATCCACGGCTTACGCATCCCGTCTCTCTGGCCAGCGTAGTGCAACTGCCGACCCGCCCGCTCG
*
4084787 TTTCGACGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTT
777 TTTCGACGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTT
* * * *
4084852 GTGGCAGCAGGATCGGCAGCATGTAGAGGGGAACCCGGCCGATCCACGGCTTGCGCATCTC
842 GCGGCAGCAGGATCGGCAGCACGTAGAGGGGAACCCGACCGATCCACGGCTTGCGCATCCC
* *
4084913 GCCCCTCTGGTCGACTGAGCGCCCGCATGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCA
1 GCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCA
4084978 TT--C---C----C--AC-----TC--T---A---T-A-ATCGGACCAGACCGAGGGTTGCAGCA
66 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCA
* *
4085017 GCACATGCT-GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC-ACCGAGGCACCATCG-CTGG
131 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAG-GGCACCATCGTCTGG
* * * *
4085079 AGCATCATCGGAGAACCTGACCTACGGCATTGGGGTTCTGGCGATCAGGGGGGCCGG-GGGGTGT
195 AGCATCATCGGAGAACCTGA-CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGAGGGGTGT
* * * *
4085143 GCACACATGATGTGTGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAA
259 GCGCACAAGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
4085208 -CTCGAGAACTCACA-CCCCTTAAAG-GCATTTGCGATTTTACAGGTTTGCTGCCAGTAGCCAAT
324 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
4085270 AAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
389 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * * * * *
4085335 GCTGAATTTTTTTTTGCATGCCAAACAAAATATAAGGATCACATCTACCAGGTTTGGGGCCAAAA
454 GCTGAAATTTTTTGTGCATGCCAAAAAAAATACAACGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * ** *
4085400 ATCCTTTCGAAAAAATTTTAAAAAAT-TCTGAACCGTAAAATGTTTTGAAAATTGTGAAAAATAG
519 CTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
* * * * *
4085464 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGAATGAATATCCAA
583 AAAACGAGTCGTCTTGCCATGAAACTTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* ** * *
4085529 GCCATAGAAATGGCATTGGCATGCAGACATATGAATATGTGCCTAAACCCACCTACCACCCTATC
648 GCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * *
4085594 GATCCATGGCTTACGCATCCTGTCTCTCTGGCTAACGTAGTGC--CCGCCCGTCAACCCGCCCGC
713 GATCCACGGCTTACGCATCCCGTCTCTCTGGCCAGCGTAGTGCAACTG-CCG---ACCCGCCCGC
** * * **
4085657 TTTTTTCGATGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTAAGG
774 TCGTTTCGACGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGG
* * ** **
4085722 GTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGTAACCCGATTGATCCACGGCTTGCGCATCTT
839 GTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGAACCCGACCGATCCACGGCTTGCGCATCCC
4085786 GCCCCTCT
1 GCCCCTCT
4085794 ACGTGCTGCA
Statistics
Matches: 2362, Mismatches: 278, Indels: 101
0.86 0.10 0.04
Matches are distributed among these distances:
864 150 0.06
865 223 0.09
866 12 0.01
867 67 0.03
868 3 0.00
869 90 0.04
870 34 0.01
871 1 0.00
872 1 0.00
873 129 0.05
875 1 0.00
878 1 0.00
880 2 0.00
885 2 0.00
887 1 0.00
889 3 0.00
890 403 0.17
891 170 0.07
893 3 0.00
894 1 0.00
896 180 0.08
897 73 0.03
898 2 0.00
899 5 0.00
901 2 0.00
902 1 0.00
903 5 0.00
904 222 0.09
905 366 0.15
906 209 0.09
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (902 bp):
GCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCA
GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGTCTGGA
GCATCATCGGAGAACCTGACGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGAGGGGTGTGC
GCACAAGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAAATTTTTTGTGCATGCCAAAAAAAATACAACGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
ACGAGTCGTCTTGCCATGAAACTTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTACGCATCCCGTCTCTCTGGCCAGCGTAGTGCAACTGCCGACCCGCCCGCTCGTTTC
GACGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTTGCGG
CAGCAGGATCGGCAGCACGTAGAGGGGAACCCGACCGATCCACGGCTTGCGCATCCC
Found at i:4086656 original size:26 final size:26
Alignment explanation
Indices: 4086620--4086670 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
4086610 GTTGACTTAG
4086620 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4086646 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
4086671 TGATTGGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4088047 original size:27 final size:26
Alignment explanation
Indices: 4087990--4088047 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
4087980 CTCCTTCCAA
**
4087990 AAAAAGTTTAAAAAATCTGAAACCGT
1 AAAAAGTTTAAAAAATCTGAAACAAT
*
4088016 AAAAAGTTTCAAAAATCATGAAA-AAT
1 AAAAAGTTTAAAAAATC-TGAAACAAT
4088042 AGAAAA
1 A-AAAA
4088048 CGAGTCGTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 18 0.67
27 9 0.33
ACGTcount: A:0.60, C:0.09, G:0.10, T:0.21
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCTGAAACAAT
Found at i:4088246 original size:12 final size:12
Alignment explanation
Indices: 4088214--4088249 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
4088204 GTCGGCATAG
*
4088214 TGCCCGCCAGCC
1 TGCCCGCCCGCC
4088226 TGCCCGCCCGCC
1 TGCCCGCCCGCC
4088238 TGCCCGCCCGCC
1 TGCCCGCCCGCC
4088250 CGCTCATTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.03, C:0.64, G:0.25, T:0.08
Consensus pattern (12 bp):
TGCCCGCCCGCC
Found at i:4088466 original size:26 final size:26
Alignment explanation
Indices: 4088430--4088480 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
4088420 GTGGACTTAG
4088430 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4088456 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
4088481 TGATCGGATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4090409 original size:901 final size:899
Alignment explanation
Indices: 4085801--4092705 Score: 8939
Period size: 905 Copynumber: 7.7 Consensus size: 899
4085791 TCTACGTGCT
* *
4085801 GCAGGACATACTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT--TGCTGGGGCACCATCGT
1 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCAT-C-GGGGCACCATCGT
* * * * *
4085864 CGGAGCATCGCCGGAGAACCTGGCCGGCGACATT-GGGATTCCGATGATCTGGGGAGCCGGGGGG
64 CGGAGCATCGCCGGAGAACCTGACCGACGGCATTAGGG-TTCCGACGATC-GGGGGGCCGGGGGG
*
4085928 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCAT
127 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * * * * *
4085993 CAAACCTCAACAACTCACGCTCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGC
192 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
4086058 CATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
257 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
*
4086123 TTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
322 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * * * *
4086188 -AAACTCTTTCCAAAAAAATTTTAAAAAATCTCTAATCGCAAAAAGTTTTGAAAATTCGTGAAAA
387 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAA
*
4086252 ATAGAAAACGAGTCGTCTTGCCCTGAAACTTCACGTGAAGGCTT-AGCGGACCATTGTATGAATT
451 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG-GGACCATTGTATGAATT
* * *
4086316 TCCAAGCCATAAAAATGGCATTAGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
515 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * *
4086381 CCATCGATTCACGGCTTACGCATCCTGTCTCTCTGGCCGGCATAGTG--C--CCGCCCGCCCGCT
580 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCATCCGCCCGCCCGCT
* * * *
4086442 CGTTTCGACAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-AACAAACTGAGGG
645 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGG
* * * ** * * *
4086506 TTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCGGCCGATCCACGACTTGTGCATCCCGC
710 TTGCAGCAGCAGGATTGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGC
* *
4086571 CCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATT
775 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * *
4086636 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTATGATTGGACCAGATCGAGGGTTGCG
840 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
* * *
4086696 GCAGCACATGCTGGGCTCAGGCATGTGGTGGTGCCACATTTTTCTTCACCGGGG---CA----C-
1 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCG
* * * * * *
4086753 ---CATCGCCGGACAACCTGACTGACAGCATTGGGGTT-CTAGCGATCGGGGGGGCC-AGGGGGT
66 GAGCATCGCCGGAGAACCTGACCGACGGCATTAGGGTTCCGA-CGATC-GGGGGGCCGGGGGGGT
* * *
4086813 GTGCGCACATGATGTGCAATAGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
129 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
4086878 AACCTCGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
194 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
4086943 ATAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
259 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
4087008 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATATAAGGATCATGTCTACCAAGTTTGGGGCCAA
324 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
** * * * **
4087073 AAAGCCTTTCGAAAAAATTTTAAAAAAT-TCTGAACCGTAAAATGTTTTAAAAATTATGAAAAAT
389 AACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
* *
4087137 AGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTGAC
453 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * *
4087202 AAGGCATAAAAATGGCATTGGAATGCTGAAATATGAAGATGTGCCTAAACGCACCTACCACCCTA
518 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * ** * *
4087267 TCGATCCACGGCTTGCGCATACTGTCTCTCTGGCCGGTGTAGTACCC-GCCTGCCCGCCCGTTCG
583 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCATCC-GCCCG-CC---CG
* * * * * * *
4087331 CTCATTTCGTCGGATGGCTTCGGCATACAGAGTTCATTCTCAGTCTAAGATCGGA-CAGGACCGA
643 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACTGA
* * * * * * * * * *
4087395 GGGTTACGGTAGTAGGATTGACAGCATGCAGAGAGGTACCCGGTCGATCCTCGACTTGCGCATCC
707 GGGTTGCAGCAGCAGGATTGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
** * * * *
4087460 CGCCCCTCTGGCCGGCTGAGCGTTCGTACGCTTGTTTCGTGGGTGGACTTAGGCATACAGAGTTC
772 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* *
4087525 ATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG
837 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
** * *
4087588 ATAGGACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTT--TGCTGGGGCACCATCGT
1 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCAT-C-GGGGCACCATCGT
* ** * *
4087651 CGGAGCATCGCCGGAGAACCTGGCCGACGGCATCGGGGTTCCGACGATCTGGGGGGCTGAGAGGG
64 CGGAGCATCGCCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATC-GGGGGGCCG-GGGGG
* *
4087716 GTGTGCGCACATGATGTGCAATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCAT
127 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
4087781 CAAACCTCGAGAACTCACTCTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
192 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
4087846 CATTAAAGTGTTTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
257 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
*
4087911 TTTAGATGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCGG-
322 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG-GGC
* * *
4087975 CAAAACTCCTTCCAAAAAAAGTTTAAAAAATCT-GAAACCGTAAAAAGTTTCAAAAATCATGAAA
386 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCG-AACCGTAAAAAGTTTCAAAAATCGTGAAA
* **
4088039 AATAGAAAACGAGTCGTCTTGCCATGAAACTGCACGTGAAGGCTTAAGGGACCATTGTACAAATT
450 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * *
4088104 TACAAGCTATAAAAATGGCATTGGCACGTAGAAATAT-AAGGATGTGCCTAAACCCACCAACCAC
515 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA-GATGTGCCTAAACCCACCTACCAC
* *
4088168 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGGCATAGTGCCCGCCAGCCTGCCCGC
579 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTG--C-CCA----------
* * *
4088233 CCGCCTGCCCGCCCGCCCGCTCATTTCGTCGGTTAGCTTAGGCATACAGAGTTCATTCCCAGTCT
631 -----T--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* ** * * *
4088298 AAGATCAGACCAAACTGA--GTTGTGGTAGCAGGA-TCAGCAGCACACAGAGGGGGACCCGATCG
689 AAGATCAGACCAGACTGAGGGTTGCAGCAGCAGGATTGA-CAGCACGCAGAGGGGGACCCGATCG
* * * * * *
4088360 ATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGGGTCCGTAC-CTTGTTTCGTGGGTGG
753 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
*
4088424 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTATGATCGGA
818 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * **
4088489 TCTGTTCGAGGGTTGCG
883 CCAGACCGAGGGTTGCG
**
4088506 GCAGCACATGCTGGGCTTAGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCG
1 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCG
* * * * *
4088571 GAGCATCACCGGAGTACCTGACCGACGGTAATAGGGTTCCGACGATCGGGGGGCCAGGGGGGTGT
66 GAGCATCGCCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGGTGT
4088636 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
131 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
*
4088701 CCTTGAGAACTCAC-CCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
196 CCTCGAGAACTCACACCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
4088765 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAGATCTTGTATACTTCGAGTTTT
260 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA-ATCTTGTACACTTCGAGTTTT
* *
4088830 TAGCTGATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
324 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * * * **
4088895 AACCCCTTCCGAAAAAAATTTAAAAAATCCCCAACTGTAAAAAGTTTTGAAAATCGTGAAAAATA
389 AACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
* * *
4088960 GAAAACAAGTCGTCTTGCCATGAGACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACA
454 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
4089025 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA-CTGACCACCCTA
519 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT-ACCACCCTA
* * * *
4089089 -CTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATGGAGCCCACCCCCTCGTCCGCCCG
583 TC-GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCA---TC-CGCCCGCCCG
*
4089153 CTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAG
643 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAG
* * * * * * *
4089218 GGTTGC-GACAGTAGGA-TCAGCAGCACGTAGAGGGGGACCAGGTCGATCCTCGGCTTGTGCATC
708 GGTTGCAG-CAGCAGGATTGA-CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATC
* * ** * * *
4089281 CCACCCCTTTGGTTGGCTGAGCCCCCGCTCGCTCGTTTCGTGGGTTGACTTTGGCATACGGAGTT
771 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * ** *
4089346 CATTCCCAGTCGAAGCATACGGAGTTCATTCCCATTCTAAGATTGGACTGGACCAAGGGTTGCG
836 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
* * ** *
4089410 GCAGCAAATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCCCCGGGGCACCATCGCCG
1 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCG
** * *** * * **
4089475 GAGCATCATCGGAGAACTTGACCGGTAGCATTAGGGTTACGATGATCGGTGGGGCC-GGCAGGTG
66 GAGCATCGCCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGG-GGGGCCGGGGGGGTG
*
4089539 TGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
130 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
4089604 ACCTCAAGAACTCACACCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
195 ACCTCGAGAACTCACA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
4089669 TTAAAGTGTCTAAAATAGGGACACTTTTTTCATATGGTCACAAAATCTTGTACACTTCGAGTTTT
259 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
4089734 TAGCTGAATTTTTTTGTGCACGCCAA-AAATAATACAAGGATCATGTCTACCATGTTTAGGGCCA
324 TAGCTGAATTTTTTTGTGCATGCCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * *
4089798 AAAATCCTTCCGAAAAAATTTTAAAAAAAGCACGAATCGTAAAAAGTTTCAAAAATCGTGAAAAA
388 AAACTCCTTCCGAAAAAATTTT-AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
* *
4089863 TAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGCCTTAAGGGACCATTGTATGAATTTA
452 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
4089928 CAAGCCATAAAAATGGCATTGGCATGCAGCAATATGAAGATGTGCCTAAACCCACCAACCACCCT
517 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* ** * *
4089993 ATCCATCCACAACTTGCGCATGCCGTCTCTCTGGCCGG-AGTAGTGCCCATCCGTCCGCCCGCTC
582 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCA-TAGTGCCCATCCGCCCGCCCGCTC
* * * *
4090057 G-TTCTGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGCCCGAGGG
646 GTTTC-GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGG
* * * *
4090121 TTGCAGCATG-AAGATTGACAGCACACAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCA
710 TTGCAGCA-GCAGGATTGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCG
* * * * *
4090185 TCCCTCTAGTCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
774 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* ** * * * *
4090250 TCCTAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCGGATCAGATCAAGGGTTGTG
839 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
* * * * * **
4090311 ACAGTAGATGTTGGGCTCGGGCATGTGCCGGTGCTGCATTTTTCTTCATCGGGGCACCATCGTCG
1 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCG
* * *
4090376 GAGCATCGCCAGAGAACCTAACCGACGGCATTAGGGTTCCGACGATCGCGGGGGCCGGGGTAGGT
66 GAGCATCGCCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCG-GGGGGCCGGGG-GGGT
* * * *
4090441 GTGTGCACATGATATACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCA
129 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
4090506 AACCTCGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
194 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
4090571 TTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
259 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
4090636 TAGCTGAATTTTTTTGTGCATGCCAATAAAAATACGAGGATCACATCTACCAAGTTTGGGG-CAA
324 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
*
4090700 AACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
389 AACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
*
4090765 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACA
454 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * * *
4090830 AGCCAAAAAAATGGCATTGGAATGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTAT
519 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * ** *
4090895 CGATCTATGGCTTGCGCATCACGTCTCCCTGGCCGGTGTAGTGCCCGCTCGCCCGCCCGCCCGCT
584 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCC-AT---CCGCCCGCCCGCT
* * *
4090960 CGTTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACTGAGGG
645 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGG
* * * * * * *
4091025 TTGCGGCAGTAGGA-TCAGCAACTCGTAGAGGGGG-CCC-AGTCGATCCCCGGCTTACGCATCCC
710 TTGCAGCAGCAGGATTGA-CAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCC
* * *
4091087 GCCCTTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATAC-G-G----
773 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
4091146 -----AG--T-----T-C--A-TTC-TT---AGTCTAAGATCGGATCAGACCGAGGGTTACG
838 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
* * * ** * *
4091188 GCAGCAGATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCCCCGAGGCACCATCGCCG
1 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCG
* * * * * *
4091253 GAGCATCGTCGGAGAACCTAACCGGCGGCATT-GAGGTTTCGACGAT-AGGGGACCGGGGGGGTG
66 GAGCATCGCCGGAGAACCTGACCGACGGCATTAG-GGTTCCGACGATCGGGGGGCCGGGGGGGTG
* *
4091316 TGCGCACATGATGTTCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
130 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
4091381 ACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
195 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
4091446 TAAAGTATCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
260 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * **
4091511 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACTAAGTTTGGGGAAAAA
325 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * * * *
4091576 AATCCCTCCGAAAAAATTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAGCATGAAAAATAA
390 ACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
* * *
4091641 AAAACGAGTCGTCTTCCCATGAAACTTGATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
455 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * * *
4091706 GCCATAAAAATGGCATTGGTAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATT
520 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * ** *
4091771 TATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCATAGTGTCCGCCCGCCCGCCCGCTTGTTT
585 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCATCCGCCCGCCCGCTCGTTT
* * * * *
4091836 CGTCGGTTGGCTTATGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTA
650 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCA
* * ** * *
4091901 GTAGCAGGATTGGCAGCACGCAGAGGGGGACCCTTTCGATCCCCAGCTTGCGCATCCTGCCCCTC
715 GCAGCAGGATTGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * * *
4091966 TGGCCGTCTGAGTGCCCGTACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCGCAG
780 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * *
4092031 TCTAAGCATACGGAGTTCGTTCCCAGTCTAAGATCAGACCAGAACGAGTGTTGCG
845 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
* * ** ** *
4092086 ACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTTGTCGGGGCACCATCGCCG
1 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCG
* ** *
4092151 GAGCATCGCCTGAGAACCTGACCGACGGCATTAGGGTTCCGGTGATCGTGGGTGCC-GGGGGGTG
66 GAGCATCGCCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCG-GGGGGCCGGGGGGGTG
* * * *
4092215 TGCGAACATGATGTGCGATGGGTACAGGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAA
130 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
4092280 ACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAAGTTTG-TCGCCAGTAGCCT
195 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCCA
* *
4092344 TTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGACTTTT
259 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
4092409 TAGCTGAATTTTTTTGTGCACGCCAA-AAAAATACAAGGATCAAGTCTAACAAGTTTAGGGCCAA
324 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
** * * **
4092473 AACTCCTTTTGAAAAAATTTTAATAAAATCTCGAACCGCAAAAATTTTTGAAAATCGTGAAAAAT
389 AACTCCTTCCGAAAAAATTTTAA-AAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
* * *
4092538 AAAAAACGAGTCATCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
453 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
4092603 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACTAGCCTA
518 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
4092668 TCGATCCACAGCTTGTGCATCCCGTCTCTCTAGCCGGC
583 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
4092706 GTAGCCTATC
Statistics
Matches: 5265, Mismatches: 610, Indels: 266
0.86 0.10 0.04
Matches are distributed among these distances:
871 93 0.02
872 75 0.01
873 1 0.00
874 245 0.05
875 226 0.04
876 1 0.00
877 122 0.02
880 2 0.00
881 3 0.00
882 1 0.00
883 422 0.08
884 71 0.01
885 6 0.00
886 2 0.00
887 5 0.00
888 3 0.00
890 2 0.00
891 51 0.01
892 222 0.04
893 1 0.00
894 3 0.00
895 50 0.01
896 1 0.00
898 170 0.03
899 400 0.08
900 207 0.04
901 415 0.08
902 173 0.03
903 274 0.05
904 454 0.09
905 740 0.14
906 10 0.00
907 1 0.00
908 2 0.00
914 3 0.00
915 5 0.00
916 173 0.03
917 293 0.06
918 191 0.04
919 78 0.01
920 1 0.00
921 56 0.01
922 2 0.00
924 2 0.00
925 5 0.00
926 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (899 bp):
GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCG
GAGCATCGCCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGGTGT
GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
CTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCATCCGCCCGCCCGCTCGTTTC
GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAG
CAGCAGGATTGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCT
GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
Found at i:4092039 original size:26 final size:26
Alignment explanation
Indices: 4092010--4092062 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4092000 GTTGACTTAG
*
4092010 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
4092036 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4092062 G
1 G
4092063 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4094330 original size:26 final size:26
Alignment explanation
Indices: 4094300--4094352 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4094290 GTTAACTTAG
4094300 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
4094326 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4094352 G
1 G
4094353 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4095227 original size:26 final size:26
Alignment explanation
Indices: 4095198--4095250 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4095188 GTTGACTTAG
**
4095198 GCATACGGAGTTCATTCGTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
4095224 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4095250 G
1 G
4095251 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4096133 original size:26 final size:26
Alignment explanation
Indices: 4096097--4096149 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4096087 GTTGACGTAG
4096097 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
4096123 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4096149 G
1 G
4096150 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4096665 original size:905 final size:898
Alignment explanation
Indices: 4093442--4096890 Score: 4668
Period size: 898 Copynumber: 3.8 Consensus size: 898
4093432 GTTGTCTTAG
* * * *
4093442 GCATACGGAGTTCATTCTCAGTATAAGATC-GGACCGGACTGAGGGTTGCGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
4093506 GCTCAGGCATGTGCTGGTGCCACATTTTTCTTCTTCGGGGCACCAT--C---G--T---CGGAGA
66 GCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCGCCGGAGA
* ** *
4093561 ACCTGACCGAC-GACATTGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGA-ATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
4093625 AATGGGTGCTCGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAAAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * * *
4093690 CCCCCTTTAATAGCATTTGAGATTTTACAGGTTTGCTGCCACTAGGCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
4093755 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * ** *
4093820 GCATGCCAATAAAAATATAAGGATCACGTCTACCAAGTTTGGGCCCAAAACAACTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * *
4093885 TTTTAAAAAATCCCAAACCGCAAAAAGTTTCCAAAATCATGAAAAATGGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
4093950 CCATGAAACGTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAAGCCATAAAAAGGGCA
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC-AAGCCATAAAAATGGCA
* * * * *
4094015 TTGGCATGCAGAAATATGAAGATGTACCCAAGCCCACCTACCACCCTACCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
* * * * *
4094080 CATCCCGTCTCTTTGGCCGACGTAGTGCCCGCCCGCCCG----CTCGTTTCATCGGTTGGCTTAG
649 CATCCCGTCTCTCTGGCTGACATAGTGCCCGCCCGCCCGCCCACTCATTTCGTCGGTTGGCTTAG
* ** * * * * *
4094141 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACTAGAAGAAGGGTTACAGCAGCAAGATCGGTA
714 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATGGAGGGTTGCAGTAGCAGGATCGGTA
* * * *
4094206 GCACGCAGAGGGGGACCCAACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGC
779 GCACGCAGAGGGGGACCCAACCGATCCCTAGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGCGC
* * *
4094271 CCGCACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
844 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
4094326 GCATACGGAGTTCATTCCCGGTCTAAGATC-GGACCGGACCGAGGGTTGTGGCAGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
4094390 GCTCGGGCATGTTCTTGTGCATCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCTGGAG
66 GCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATCGC-GGAGCATCGCCGGAG
* * * *
4094455 AACTTGACCGGCGAAATTGGGGTTCCGGAGATCGGGGGGCTGGGGTGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGAATTGGGGTTCCGGTGATCGGGGGGCCGGGG-GGTGTGCGCACATGATGTG
* * * * *
4094520 CGATGGGTGCTGGGACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAACCCTCGAGAACTCGC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *
4094585 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTTTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
4094650 GGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTGTTTAGTTGAA-TTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * **
4094714 TGCATGCCAAAAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * * * *
4094779 ATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTAAAAAACAGAAAATGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
4094844 GCCATGAAACTTGATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
4094909 TTGGTAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCTATCCACGACTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
* * *
4094974 CATCCCGTCTCTCTGGCTGGCATAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAA
649 CATCCCGTCTCTCTGGCTGACATAGTGCCCGCCCGCCCGCCCACTCATTTCGTCGGTTGGCTTAG
* *
4095039 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGTAGTAGCAGGATCGGTA
714 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATGGAGGGTTGCAGTAGCAGGATCGGTA
*** *
4095104 GCACGCAGAGGGGGACCCTTTC-ATTCACC-AGCTTGCGCATCCTGCCCCTCTGACC-GTCTGAG
779 GCACGCAGAGGGGGACCCAACCGA-TC-CCTAGCTTGCGCATCCTGCCCCTCTGGCCGGT-TGAG
** * * **
4095166 TTCCCGTACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCGTAGTCTAA
841 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * **
4095224 GCATACGGAGTTCGTTCCCAGTCTAAGATCA-GACCAGAACGAGTGTTGCGATAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
4095288 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGTGCACCATCGCCGGAGCATCACCGGAG
66 GCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGCCGGAG
* * * * *
4095353 AACCTGACCGACGGCATTAGGGTTCCGGTGATTGTGGGTGCCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGAATTGGGGTTCCGGTGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * * *
4095418 TGATGGGTGCTGATACTTGGCCCTTGTATTGGCCCCCTATCCCTCATCGAACCTCTAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *
4095483 ACCCCCTTAAATAGCATTTGAGCTTTTACAGGTTTGGTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
4095548 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** * * * **
4095613 TGCATCCCAACAAAAATACAAGGATCGTGTCTACCAAGTTTAGGGCCAAAAATCTTTTTAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * *
4095678 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATGGAAAACGAGCCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
4095743 GCCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGGATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
4095808 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGACTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
* * * *
4095873 CATCCCGTCTCTCTAGCTGACGTAGTGCCCGCCCGCCCGTCCACTCGTTTCGTCGGTTGGCTTAG
649 CATCCCGTCTCTCTGGCTGACATAGTGCCCGCCCGCCCGCCCACTCATTTCGTCGGTTGGCTTAG
* * * * **
4095938 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATGGAGGGTTGCGGTAGTAGGATTGACA
714 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATGGAGGGTTGCAGTAGCAGGATCGGTA
* * *
4096003 GCACGCAGAGGGGGACCCGACCGATCCCTAGCTTGCGCTTCCTGCACCTCTGGCCGGTTGAGCGC
779 GCACGCAGAGGGGGACCCAACCGATCCCTAGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGCGC
* *
4096068 TCGCACGCTCGTTTCGTGGGTTGACGTAGGCATACGGAGTTCATTCCCAGTCTAA
844 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
4096123 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATTGGACCGGACCTG-GGGTTACGGCATCACAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATC--A--GGACCGGACC-GAGGGTTGCGGCAGCACAT
* * * * * *
4096187 GCCGAGCTCGGGCATGTGCTGGTGCCTCATTTTTCCTCGTTGGGGCACCATCGTCAGAGTATCGC
61 GCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGC
* * *
4096252 CGGAGAACCTGACCGGTGGAATTGGGGTTCCAGTGATCGGGGGGTCGGGTGGGGTGTGCGCACAT
125 CGGAGAACCTGACCGGCGGAATTGGGGTTCCGGTGATCGGGGGG-CCGG-GGGGTGTGCGCACAT
*
4096317 GATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
188 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
* * *
4096382 ACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTA-CCTACTAAAGTGT
253 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-ATTAAAGTGT
* * * *
4096446 CTGAAATGGGGACACTTTTTTCAAATGGTGACAAAATCTTGAACACTTCGAGTTTCTAGCTAAAT
317 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * *
4096511 TTTTTTGTACATGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTC
382 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * *
4096576 CAAAAAAATTTTAAAACATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAG
447 CAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* * *
4096641 TCATCTTGGCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
512 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
4096706 AATGGCATTGGCA--CACGAAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTATCGATCCA
577 AATGGCATTGGCATGCA-G-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * *
4096769 CGGCTT-CGCATCCCATCTCTCTGGC-CAGCATAATGCCTGCCCACCCGCCCGCCCACTCATTTT
640 CGACTTGCGCATCCCGTCTCTCTGGCTGA-CAT-A-G--TGCCCGCCCGCCCGCCCACTCATTTC
* * *
4096832 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGG
700 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATGGAGGG
4096891 AAGCAGGGAG
Statistics
Matches: 2236, Mismatches: 286, Indels: 62
0.87 0.11 0.02
Matches are distributed among these distances:
884 97 0.04
886 1 0.00
890 1 0.00
892 1 0.00
894 107 0.05
895 205 0.09
896 188 0.08
897 2 0.00
898 496 0.22
899 492 0.22
900 3 0.00
901 1 0.00
903 6 0.00
904 130 0.06
905 428 0.19
906 1 0.00
908 77 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
GCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCGCCGGAGA
ACCTGACCGGCGGAATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
TCCCGTCTCTCTGGCTGACATAGTGCCCGCCCGCCCGCCCACTCATTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATGGAGGGTTGCAGTAGCAGGATCGGTAGC
ACGCAGAGGGGGACCCAACCGATCCCTAGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:4098347 original size:26 final size:27
Alignment explanation
Indices: 4098311--4098364 Score: 101
Period size: 26 Copynumber: 2.0 Consensus size: 27
4098301 ATTGACTTAG
4098311 GCATACGGAGTTCA-TTCCCAGTCTAA
1 GCATACGGAGTTCATTTCCCAGTCTAA
4098337 GCATACGGAGTTCATTTCCCAGTCTAA
1 GCATACGGAGTTCATTTCCCAGTCTAA
4098364 G
1 G
4098365 ATTGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 14 0.52
27 13 0.48
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (27 bp):
GCATACGGAGTTCATTTCCCAGTCTAA
Found at i:4099006 original size:906 final size:882
Alignment explanation
Indices: 4096987--4099032 Score: 2605
Period size: 885 Copynumber: 2.3 Consensus size: 882
4096977 GTACTTGGCC
* * * **
4096987 CCAAAACTCCTTACGAAAAAATTTTAAAAAATCCTGAACCACAAAAGGTTTCAAAAATCGTGAAA
1 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAA
* * *
4097052 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAAGGACCATTGTATGAATT
66 AATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * * *
4097117 TACAAGCCAAAAAAATGGCATTGGCACGTAGCAATATGAGGATGTGGCTAAACCCACGTACCATC
131 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCATC
* * * *
4097182 CTATCAATCCATGACTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCTGTTCGTT
196 CTATCAATCCATGACTTGCGCATCCCGTCTCTCTAGCCGGCATAGTGCCCGCCCGTCTGCTCGTT
* * *
4097247 CGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATAGGATGGAGGGTTGTG
261 CGTCGGTTGGCTGAGGCATACAGAGTTCATTCCAAGTCTAAGATCAGACAGGATGGAGGGTTGTG
* * * * *
4097312 CCAGCAGGATCAGTAGCACATAGAGGGGTACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTC
326 ACAGCAGGATCAGTAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTC
* * *
4097377 TGGTCGGTAGAGCGCCCGCAAGCTCGTTTCGTGAGTTGACTCAGGCATACGAAGTTCATTCCCAG
391 TGGCCGGTAGAGCGCCCACAAGCTCGTTTAGTGAGTTGACTCAGGCATACGAAGTTCATTCCCAG
* * *
4097442 TCTAAGCATATGGAGTTCATTCCCAGTCGAAGATGGGATCGGACCGAGGGTTGGGCCAGCACATG
456 TCTAAGCATACGGAGTTCATTCCCAGTCGAAGATGGGATCGGACCAAGGGTTCGGCCAGCACATG
* * * *
4097507 TTGGGCTTGGGCATGTGCCGGTGCCGCATTTTTCATCGTCGGGGCACCATCACCGGAGCATCGCC
521 CTGGGCTCGGGCATGTGCCGGTGCCGCATTTTTCATCGTCGGGGCACCATCACCGAAGCATCACC
**
4097572 GGAGAACCTGACCAACGACATTGGGGTTCCGACGATCGGGGGGGCGTTCGCACATGATGCGCAAT
586 GGAGAACCTG--CAACGAC--TGGCATTCCGACGATCGGGGGGGCGTTCGCACATGATGCGCAAT
* * *
4097637 GGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCATAGCC
647 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
* * **
4097702 CCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
712 CCTTAAAGAGCATTTGAGATTTTACAAGTTAGCTGCCAGTAGCAATTAAAACGTCTGAAATGGGG
*
4097767 ACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGCTCA
777 ACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATTTTTTTGCTCA
* * * *
4097832 AGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
842 ACCCAAAAAAAAAACAAGGATCACGTCTACCAAGTTTGGGA
* * * * * *
4097873 CCAAAAATTCTTCC-AAAAAACTTAAAAAAATCCTGCATCGCAAAACA-TTTTGAAAATCGTGAA
1 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAA-AGTTTTGAAAATCGTGAA
* *
4097936 AAACAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGCAT
65 AAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * * * *
4098001 TTACAAGCCATAAAAATGGCATTGGCACGTATAAATATGAAGCTGTGCGTAAACCCACCTATCAC
130 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAT
*
4098066 CCTAT-AGATCCATGACTTGCGCATCCCGTCTCTCTAGTCGGCATAGTGCCCACCCGCCCGTC-G
195 CCTATCA-ATCCATGACTTGCGCATCCCGTCTCTCTAGCCGGCATAGTG----CCCGCCCGTCTG
* *
4098129 ACTCGTTTCGTCGGTTGGCTGAGGTATACGGAGTTCATTCCAAGTCTAAGATCAGACCA-GACT-
255 -CTCG-TTCGTCGGTTGGCTGAGGCATACAGAGTTCATTCCAAGTCTAAGATCAGA-CAGGA-TG
* * * * *
4098192 GAGGGTTGTGACAGTAGGATCGGTAGCACACAGAGGGGGACCCGATCGATCCCCTGCTTGCGCTT
316 GAGGGTTGTGACAGCAGGATCAGTAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
* * * *
4098257 CCCACCCCTCTGGCCGGCT-GAGCGCCCACAGGCTCGTTTTATTGA-TTGACTTAGGCATACGGA
381 CCCACCCCTCTGGCCGG-TAGAGCGCCCACAAGCTCG-TTTAGTGAGTTGACTCAGGCATACGAA
* * *
4098320 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCCAGTCTAAGATTGGATCGGACTAAGGGTT
444 GTTCATTCCCAGTCTAAGCATACGGAGTTCA-TTCCCAGTCGAAGATGGGATCGGACCAAGGGTT
* *
4098385 ACGGCCAGCACCATGGCTGGG-TCGGGCATG-GCTGGTGCCGCA-TTTTCTTTCGTCGGGGCCAA
508 -CGGCCAGCA-CAT-GCTGGGCTCGGGCATGTGCCGGTGCCGCATTTTTC-ATCGTCGGGG-C-A
** * *
4098447 CCATCGGTCGAAGCATCACGCGGAGAACCTG-ATCGGC-GGCCATTCCGACGAATCGGGGGGGGC
567 CCATC-ACCGAAGCATCAC-CGGAGAACCTGCAACGACTGG-CATTCCGACG-ATC--GGGGGG-
* *
4098510 TGACGGGGTGTGCGGCACATGGATGTGCGATGGGTGCTGGTACTTGGTCCC-TATATTGGCCCCC
625 -G-C---GT-T-C-GCACAT-GATGCGCAATGGGTGCTGGTACTTGG-CCCTTATATTGGCCCCC
** * *
4098574 TATCCCTCATCAAACCTTGAGAACTTACACCCCCTTAAAGAGCATTTTAGATTTTACAAGTTAGC
680 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTAGC
4098639 TGCCAGTAGCAATTAAAACGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTAC
745 TGCCAGTAGCAATTAAAACGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTAC
** *
4098704 ACTTTGAGTTTTTAGCTAAATTGTTTTATG-T-ATCCCAAAAAAAAAAACAAGGATCACGTCTAC
810 ACTTCAAGTTTTTAGCTAAATT-TTTT-TGCTCAACCC-AAAAAAAAAACAAGGATCACGTCTAC
4098767 CAAGTTTGGGA
872 CAAGTTTGGGA
* *
4098778 CCAAAACTCCTTCCGAACAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATTGTGAAA
1 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAA
* *
4098843 AATAGAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATT
66 AATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
** * *
4098908 TACAAGCCATAAAAATGGCATTGGTTCATAGAAATATGAAGATATGCCTAAACCCACCTACCATC
131 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCATC
* ** * * ** *
4098973 CTATCAATCCA-CAGCTTATGCATCCCATCTCTCTGGCCGGTGTAATGCCCGCCCGTCTGC
196 CTATCAATCCATGA-CTTGCGCATCCCGTCTCTCTAGCCGGCATAGTGCCCGCCCGTCTGC
4099033 CTGCTCTGGC
Statistics
Matches: 994, Mismatches: 122, Indels: 72
0.84 0.10 0.06
Matches are distributed among these distances:
884 1 0.00
885 197 0.20
886 11 0.01
888 1 0.00
889 13 0.01
890 182 0.18
891 51 0.05
892 31 0.03
893 16 0.02
894 17 0.02
895 9 0.01
896 12 0.01
897 1 0.00
900 2 0.00
901 1 0.00
902 12 0.01
903 7 0.01
904 178 0.18
905 56 0.06
906 195 0.20
907 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (882 bp):
CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAA
AATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCATC
CTATCAATCCATGACTTGCGCATCCCGTCTCTCTAGCCGGCATAGTGCCCGCCCGTCTGCTCGTT
CGTCGGTTGGCTGAGGCATACAGAGTTCATTCCAAGTCTAAGATCAGACAGGATGGAGGGTTGTG
ACAGCAGGATCAGTAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTC
TGGCCGGTAGAGCGCCCACAAGCTCGTTTAGTGAGTTGACTCAGGCATACGAAGTTCATTCCCAG
TCTAAGCATACGGAGTTCATTCCCAGTCGAAGATGGGATCGGACCAAGGGTTCGGCCAGCACATG
CTGGGCTCGGGCATGTGCCGGTGCCGCATTTTTCATCGTCGGGGCACCATCACCGAAGCATCACC
GGAGAACCTGCAACGACTGGCATTCCGACGATCGGGGGGGCGTTCGCACATGATGCGCAATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAAGTTAGCTGCCAGTAGCAATTAAAACGTCTGAAATGGGGACAC
CTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATTTTTTTGCTCAACCC
AAAAAAAAAACAAGGATCACGTCTACCAAGTTTGGGA
Found at i:4099061 original size:20 final size:20
Alignment explanation
Indices: 4099036--4099075 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
4099026 CGTCTGCCTG
*
4099036 CTCTGGCCCGTTGAGTGCCC
1 CTCTGGCCCGCTGAGTGCCC
4099056 CTCTGGCCCGCTGAGTGCCC
1 CTCTGGCCCGCTGAGTGCCC
4099076 GCACGCTCGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.05, C:0.42, G:0.30, T:0.23
Consensus pattern (20 bp):
CTCTGGCCCGCTGAGTGCCC
Found at i:4100773 original size:26 final size:26
Alignment explanation
Indices: 4100739--4100791 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4100729 GTTGACTTAG
*
4100739 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
4100765 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4100791 G
1 G
4100792 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4102460 original size:876 final size:881
Alignment explanation
Indices: 4099882--4104194 Score: 5378
Period size: 900 Copynumber: 4.8 Consensus size: 881
4099872 AGCTTACGAG
* * * **
4099882 GTTCATTCCCAGTCT-A-AG-A-TCG-GACCAGACCGAGGGTTGCGGTTGCACATGCTGGGCTCG
1 GTTCATTCCCAGTCTAAGAGTATTCGAGATCAGACCAAGGGTTGTGGCAGCACATGCTGGGCTCG
* * * * **
4099942 GGCATATGCTGGTGTCGTATTTTTCTTCGTCTGGGCACCATCGTCGGAGCATCACCGGAGAACCT
66 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
* ** * * *
4100007 GACCGACGGCATTGGGGTTCCGA-CGAT-AAGGGGTC-GGGGGGTGTGCGCATATGATGTGTGAT
131 GACCGGCGGCATTGGGGTTCCGATCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* *
4100069 GGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCT
196 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
4100134 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGG
261 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
4100199 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACGTCGAGTGTTTAGCTGAATTTTTTTGTGCA
326 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
4100264 TGCCAAAAAAAATACAAGGATCACGTCTTCCAAG-TTCGGGACTAAAACTCTTTCCGAAAAAATT
391 TGCCAACAAAAATACAAGGATCACATCTACCAAGTTTCGGGAC-AAAACTCCTTCCGAAAAAATT
4100328 TTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
455 TTAAAAAATCC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
4100393 ATGAAACTTCACGTGAAGGCTTTAGGGACCATTGTAGGAATTTACAAGCCATAAAAATGGCATTG
519 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
4100458 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACAACCACCCTCTCGATCAACGGCTTGCG
584 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCT---ACCACCCTATCGATCCACGGCTTGCG
*
4100523 CATCCCGTCTCACTGGTCGGCGTAGT--------G-C--CCGCCCGCTCGTTTCGTCGGTTGGCT
646 CATCCCGTCTCTCTGGTCGGCGTAGTGCCCACCCGCCGTCCGCCCGCTCGTTTCGTCGGTTGGCT
* ** * *** * * *
4100577 TAGACATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGATTGAGGGTTACGGTAGTAGGATCG
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAGCAGGATCG
* * * * *
4100642 ACAGCACGCAGAGGGGGACCCGA-TCGATCACCGACTTGCACTTCCCGCCCCTCTAGCCGGTTGA
776 ACAGCACGCAGAGGGGGACCCGACT-GATCCCCGACTTACGCATCCCGCCCCTCTAGCCGGCTGA
*
4100706 GCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
840 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
* *
4100748 GTTCATTCCTAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCGGATCGGACAGAGGGTTG
1 GTTCATTCCCAGTCT-A--A----GAG-T-ATT--C-G----AGATCAGA-C---CA-AGGGTTG
* * * * * * * **
4100813 TGGCCGCACATGCTGCGCTCAGGCATGTGCTGGTGTCGCATTTCTCTTTGTCAGGGCACCATCAC
45 TGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
*
4100878 CGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCAAGGGGGCC-GGGGG
110 CGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATCGATC-GGGGGGCCGGGGGG
*
4100941 GTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
174 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
4101006 CAAACCTCGAGAACTCTCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
239 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
4101071 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
304 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * *
4101136 TTTTGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGA-CTACCAAGTTT-GGGG
369 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA-CATCTACCAAGTTTCGGGA
* * * *
4101199 CAAAACTCCTTCTGAAAAAATTATAAAAAATCTCGAACCGCAAAAAGTTTTAAAAATCAT-AAAA
433 CAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CGAACCGTAAAAAGTTTCAAAAATCATGAAAA
* * *
4101263 A-AAAAGAACGAGTCGTCTTGCCATAAAACTTCATGTGAAGGCTTAAGTGG-CCATTGTATGAAT
497 ATAGAA-AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG-GGACCATTGTATGAAT
* * *
4101326 TTACAAGCGATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCTTAAACCCTCCTACCAC
560 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
4101391 CCTATCGATCCACGGCTTCCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCTGTCCGC
625 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCACCCGCC-GTCCGC
* *
4101456 CCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AGAC
689 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-AC
* ** * *
4101520 CGAGGGTTGCGGCAGCAGGATCGGTAGCACGGAGAGGGGGACCCGACCGATCCCCGACTTACGCA
753 CAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACTGATCCCCGACTTACGCA
* * * ** * * *
4101585 TCTCGCCCCTCTAGCCGGCTGGGTGCCTTCACGCTCATTTCGTCGGTTGACTTAGGCATACGGA
818 TCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
* *
4101649 GTTCATTCCAAGTCT-A-AG-ATT-G-GATCAGACCAAGGGTTGTGGCAGCACATGCTGGGATCG
1 GTTCATTCCCAGTCTAAGAGTATTCGAGATCAGACCAAGGGTTGTGGCAGCACATGCTGGGCTCG
* *
4101709 GGCATGTG-TCGGTGCCGCATTTTTCTTCGT-TGGGCACGATCG-CTGGAGCATCGTCGGAGAAC
66 GGCATGTGCT-GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGTCGGAGAAC
* *
4101771 CTGACTGGTGGCATTGGGGTTCC-ATCGATCGGGGGGGCCAGGGGGGGTGTGCGCACATGATGTG
129 CTGACCGGCGGCATTGGGGTTCCGATCGATC-GGGGGGCC-GGGGGGGTGTGCGCACATGATGTG
*
4101835 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGGGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
4101899 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
**
4101964 GGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG-TTCATTGTTTTT
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTT
* * * ** *
4102027 GTGCATTCCAACAAAAATACAAGGATCATATCTACCAGGTTTCGGTTCAAAACTCCTTCTGAAAA
386 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTCGGGACAAAACTCCTTCCGAAAA
*
4102092 AATTTTAAAAAATCCGAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
451 AATTTTAAAAAATCCG-AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
4102157 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
4102222 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
580 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** *
4102287 GCATCTCGTCTCTCTAATCGACGTAGTGCCCACCCGTCCGTCCGCCCGCTCGTTTCGTCGGTTGG
645 GCATCCCGTCTCTCTGGTCGGCGTAGTGCCCACCCG-CCGTCCGCCCGCTCGTTTCGTCGGTTGG
* * ** * *
4102352 CTTAGGCATACGTAGTTAATTCCCAGTCTAAGATTGGACCGAACCAAAGGTTGCGGCAGTAGGAT
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAGCAGGAT
* * * *
4102417 CGACAGCACGCAGAGGGGTACCCGACTGATCCCCAACTTACGCATCCCGCCCCTCTGGCCGGTTG
774 CGACAGCACGCAGAGGGGGACCCGACTGATCCCCGACTTACGCATCCCGCCCCTCTAGCCGGCTG
4102482 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
839 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
* *
4102525 GTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCAAGTCTAAGATCAGACTGGATCGAGTGTTG
1 GTTCATTCCCAG--T---C-TA-AGAG-T-ATT-C--G----AGATCAGAC-----CAAGGGTTG
* * *
4102590 TGGCAACACATGCTAGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGT
45 TGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
* * *
4102655 CGGAGCATTGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGT-GATCGGGGGGGCCGGGGGT
110 CGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATCGATC-GGGGGGCCGGGGG-
* *
4102719 GGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA-TGGGCCCCTATCCCTCA
173 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * * *
4102783 TCAAACCTCAAGAACTCACACCCCCTTAAATAGCTTTTGAGATTTTACAGGTTTGCTACCAGTAG
238 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * * * * *
4102848 CCAATAAAGTGTCTGAAATGGGGTCACTTTTTTTAAATGATCACAATATCTTGTACACTTTGAGT
303 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * *
4102913 TTTTAGTTGAATTTTTTTGTGCATGCC-ACAAAAATACAAGGATCAAATCTACCAAGTTTGGGGC
368 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTCGGGA
* *
4102977 CAAAACTCCTTGCGAAAAAATTTTAAAAAATCCAAAACCGTAAAAAGTTTCAAAAATCATGAAAA
433 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCC-GAACCGTAAAAAGTTTCAAAAATCATGAAAA
* * * *
4103042 ATAGAAAAAGAATCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTTTGAATTT
497 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
4103107 ACAA---ACAAAAATAGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCT
562 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * * *
4103169 TATCGATCCATGGCTTACGCATCCCGTCTCACTGGTCAGCGTACTGCCCGCCCGCC-TACCCGCG
627 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCACCCGCCGT--CCGCC
* * * *
4103233 TGCTCGTTTCGTCGGTTAGTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCA
690 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCA
* * ** * * **
4103298 AGGGTTGCGGTAGCAGGAAT-GATAGCACATAGAGGGGGACCCGACTAATCCCCGCCTTGTGCAT
755 AGGGTTGCGGCAGCAGG-ATCGACAGCACGCAGAGGGGGACCCGACTGATCCCCGACTTACGCAT
* * * * *
4103362 CTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTCGGCATACAGA
819 CCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
*
4103425 GTTCCTTCCCAGTCTAAGCATACAGAGTTCATTCTCAGTCTAAGATCAGACCGGACCTAGGGTTG
1 GTTCATTCCCAG--T---C-TA-AGAG-T-A-T-TC-G----AGATCAGACC--A---AGGGTTG
* * * ** * *
4103490 CGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTACATTTTTCTTTGCCGGGGCACCATCGT
45 TGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
* * *
4103555 CGGAGCATCGTCGAAGAACCTGACCGGCGGCATTGGGGTTCCGAT-GATCGGGTGGTCGGTGGGG
110 CGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATCGATCGGGGGGCCGG-GGGG
* *
4103619 GTGTGCACACATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
174 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* ** *
4103684 CAAACCTCAAGAACTCACACCCCCTTAAAGAGTGTTTGAGATTTTACAAGTTTGCTGCCAGTAGC
239 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * * * * * * * *
4103749 TATTAAAGTGTCTAAAATGGGGTCATTTTTTTTAAATGATAACAAAATCTTGTACACTTTGTGTT
304 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * ** *
4103814 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAAAAAGTTTGGGGAC
369 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTCGGGAC
*
4103879 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCTTAAAAAGTTTCAAAAATCATGAAAAA
434 AAAACTCCTTCCGAAAAAATTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
*
4103944 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGCAGGCTTAAGGGACCATTGTATGAATTTA
498 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
*
4104009 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCAC
563 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT---ACCAC
* * *
4104074 CCTATCGATCCACGGCTTGCGCATCCCATCTCTCTAGTCGGCGTAGTGCCCGCCCGCCCGCTCGC
625 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCACCCG-CCG-T---
* * *
4104139 CCGCCCGCTCGTTTCGTCTGTCGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAG
685 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
4104195 CATACGGAGT
Statistics
Matches: 3028, Mismatches: 299, Indels: 195
0.86 0.08 0.06
Matches are distributed among these distances:
866 14 0.00
870 1 0.00
873 7 0.00
874 147 0.05
875 211 0.07
876 406 0.13
877 6 0.00
878 2 0.00
879 2 0.00
880 6 0.00
881 2 0.00
882 2 0.00
884 1 0.00
885 3 0.00
887 5 0.00
888 4 0.00
889 49 0.02
891 4 0.00
892 218 0.07
893 54 0.02
894 251 0.08
895 3 0.00
897 10 0.00
898 2 0.00
899 56 0.02
900 584 0.19
901 339 0.11
902 63 0.02
903 364 0.12
904 102 0.03
905 4 0.00
907 53 0.02
908 2 0.00
910 1 0.00
911 50 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (881 bp):
GTTCATTCCCAGTCTAAGAGTATTCGAGATCAGACCAAGGGTTGTGGCAGCACATGCTGGGCTCG
GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
GACCGGCGGCATTGGGGTTCCGATCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACATCTACCAAGTTTCGGGACAAAACTCCTTCCGAAAAAATTT
TAAAAAATCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGTCGGCGTAGTGCCCACCCGCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAGCAGGATCGACAGC
ACGCAGAGGGGGACCCGACTGATCCCCGACTTACGCATCCCGCCCCTCTAGCCGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
Found at i:4102546 original size:26 final size:26
Alignment explanation
Indices: 4102516--4102568 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4102506 GTTGACTTAG
* *
4102516 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
4102542 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
4102568 G
1 G
4102569 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:4103452 original size:26 final size:26
Alignment explanation
Indices: 4103416--4103468 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4103406 GTTGACTTCG
*
4103416 GCATACAGAGTTCCTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
4103442 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4103468 G
1 G
4103469 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4104141 original size:12 final size:12
Alignment explanation
Indices: 4104124--4104149 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
4104114 GCGTAGTGCC
4104124 CGCCCGCCCGCT
1 CGCCCGCCCGCT
4104136 CGCCCGCCCGCT
1 CGCCCGCCCGCT
4104148 CG
1 CG
4104150 TTTCGTCTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.65, G:0.27, T:0.08
Consensus pattern (12 bp):
CGCCCGCCCGCT
Found at i:4104204 original size:26 final size:26
Alignment explanation
Indices: 4104168--4104220 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4104158 GTCGGCTTAG
*
4104168 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4104194 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4104220 G
1 G
4104221 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4104832 original size:752 final size:725
Alignment explanation
Indices: 4103392--4107084 Score: 4105
Period size: 711 Copynumber: 5.1 Consensus size: 725
4103382 AGCGCCCGCA
* * * * * *
4103392 CGCTCGTTTCGTGGGTTGACTTCGGCATACAGAGTTCCTTCCCAGTCTAAGCATACAGAGTTCAT
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA-TTC--
* * * * *
4103457 TCTCAGTCTAAGATCAGACCGGACCTAGGGTTGCGGTAGCACATGCTGGGCTCAGGCATGTGCTG
63 T-TCAGTCTAAGATC-GA-C-GA-CGA-GGTTGTGGCAGCACATTCTGGGCTCGGGCATGTGCTG
* * * *
4103522 GTGCTACATTTTTCTTTGCCGGGGCACCATCGTCGGAGCATCGTCGAAGAACCTGACCGGCGGCA
122 GTGCCACATTTTTCTTCGCC-GGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCTGCA
* * * * *
4103587 TTGGGGTTCCGATGATCGGGTGGTCGGTGGGGGTGTGCACACATGATGTGCGGTGGGTGCTGGTA
186 ATGGGGTTCCGACGATCGGGGGGCCGG-GGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTA
* *
4103652 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGT
250 CTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * * * * *
4103717 GTTTGAGATTTTACAAGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAATGGGGTCATTTTTTTT
314 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
* * * *
4103782 AAATGATAACAAAATCTTGTACACTTTGTGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
379 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
** * *
4103847 ATACAAGGATCACGTCTAAAAAGTTTGGGGACAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
444 ATACAAGGATCACGTCTACCAAG-TTGGGG-CAAAAATCCTTCCGAAAAAATTTTAAAAAATCCT
*
4103912 GAACCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
507 GAACCGTAAAAAGTTTC-AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
*
4103977 GTGCAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
571 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
4104042 ATGAAGATGTGCCTAAACCCACCTACCACCACCCTATCGATCCACGGCTTGCGCATCCCA-TCTC
636 ATGAAGATGTGCCTAAACCCACCT---ACCACCCTATCGATCCACGGCTTGCGCAT-CCAGTCTC
* *
4104106 TCTAGTCGGCGTAGTGCCCGCCCGCCCGCTCGCCCGCC
697 TCCAGTCGGCGTAGT----GCCCG-CCGCT----CGCT
* * *
4104144 CGCTCGTTTCGTCTGTCGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCAT
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA-TTC-T
*
4104209 TCCCAGTCTAAGATCAGATCGAATCGAGTGTTGTGGCAGCAGATGT-TGGGCTCGGGCATGTGCT
64 T--CAGTCTAAGATC-GA-CG-A-CGAG-GTTGTGGCAGCACAT-TCTGGGCTCGGGCATGTGCT
* * * * * * *
4104273 GGTGCTACATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATTGTCGGAGAACCGGACTGACGGC
121 GGTGCCACATTTTTCTTCGCCG-GGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCTGC
* * ** * * *
4104338 ATTGGGGGTTTCGGTGATCGGGGGGTCAGGGGTGGTGTGCACACATGATGTGTGATGGGTGCTGG
185 AAT-GGGGTTCCGACGATCGGGGGG-CCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGG
4104403 TACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
248 TACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
4104468 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
313 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
* * * * *
4104533 GAAATGGTCAC-AAATCTTGTACACTTCAAGCTTTTAGCTGAATTGTTTTGTGCATGCCAACAAA
378 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* * * *
4104597 AATACAAGCATCACGT-TCACCAAG-TGGGGTAAAAATCTTTCCGACAAACATTTTAAAAAGATC
443 AATACAAGGATCACGTCT-ACCAAGTTGGGGCAAAAATCCTTCCGA-AAAAATTTTAAAAA-ATC
* *
4104660 CTGAGCCGTAAAAAGTTTCAAAATTCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTC
505 CTGAACCGTAAAAAGTTTCAAAA-TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
*
4104725 ACGTGAAGGCTTAAGGGACCATT-CATGAATTTAC-AGCCATAAAAATGGCATTGGCACGCAGAA
569 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* * *
4104788 GTA-GAAGATGTCCCACTAAA-CCACCGATCACGCTGGCACCTATCGA-CCATCCCGGCCTCAGC
634 ATATGAAGATGT-GC-CTAAACCCACC--T-AC-C--AC-CCTATCGATCCA---CGG-CT----
* ** * * *
4104850 TCGCGCAATCCAGT-TCTTCCAGTCCGGCGTAGTTCCC-AAGATTGCA
682 T-GCGC-ATCCAGTCTC-TCCAGT-CGGCGTAGTGCCCGCCGCTCGCT
* *
4104896 CGCT-GTTT-GTCGGCTTGAGCTTCTGG--TACGACAGTTCAATTCTTCCAGTCTAAG-AT-CGG
1 CGCTCGTTTCGTCGG-TTG-GCTT-AGGCATACG-GAGTTC-ATTC--CCAGTCTAAGCATACGG
4104955 A-----C---C--AGA-C--CGA-G-GGTTGTGG-ATGCACATTCTGGGCTCGGGCATGT-CTGG
59 ATTCTTCAGTCTAAGATCGACGACGAGGTTGTGGCA-GCACATTCTGGGCTCGGGCATGTGCTGG
* * * * *
4105003 -GCCCCA--ATTC-TCG--GGGCACCGATC--CAGAGCATCGTCTGGAGAACCTGACACGACTGA
123 TGCCACATTTTTCTTCGCCGGGCACC-ATCGTCGGAGCATCGTC-GGAGAACCTGAC-CGGCTGC
* * * *
4105060 AATGGGGTT-CGACGA-CCGGAGGCC---GGAGTGTGACGCACATGATGTGCGATGGGTGCTGGG
185 AATGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTG-CACACATGATGTGCGATGGGTGCT-GG
* * *
4105120 AACTTGGCCCTTATCTTGGCCCCCTATCCATCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
248 TACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
4105185 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGTACACTTTTT
312 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
* *
4105250 TCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTTGCATGCCAAAA
377 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAAAA
* * ** * * * *
4105315 AAACTACAAGGATCAGGTCTACCAAGTTTAGGACCAAAAATCGTTCTGAAAAATTTTTTAAAAAT
441 AAAATACAAGGATCACGTCTACCAAG-TT-GGGGCAAAAATCCTTCCGAAAAAATTTTAAAAAAT
** ** *
4105380 CCTGAACCACAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTT
504 CCTGAACCGTAAAAAGTTTC-AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
4105445 CATGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
568 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
*
4105510 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCAGTCTCT
633 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCAGTCTCT
* * *
4105575 CCGGTTGGCGTAGTTCCCG-C-CT-GCT
698 CCAGTCGGCGTAGTGCCCGCCGCTCGCT
* * * *
4105600 CGCTTGTTTCGTCGGTTGGGTTACGCATACGCAGTTCATTCCCAGTCTAAG-AT-CGGA--C-T-
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGATTCTTC
*
4105659 -G-----GA-C--CGA-G-GGTTGTGGCAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCGCAT
66 AGTCTAAGATCGACGACGAGGTTGTGGCAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCACAT
* * * *
4105713 TTTTCTTCACCGGGACACCATCGCCGGAGCATCGTCGGACAACCTGACCGGCTGCAATGAGGTTC
131 TTTTCTTCGCCGGG-CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCTGCAATGGGGTTC
**
4105778 CGACGATCGGGAGGGCCGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
195 CGACGATCGGG-GGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
4105843 TATATTGGCCCACTATCCCACATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
259 TATATTGGCCC-CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * *
4105908 TTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAGAATGGGGACACTTTTTTCAAATGCTCA
323 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCA
* * * *
4105973 CAAAATCTTGTACACTTCGAGTTTTCAGCTGATTTTTTTTGTGCTTGCCAACAAAAATACAAGGA
388 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGA
* * *
4106038 TCACGTCGACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CTCGAACCGTG
453 TCACGTCTACCAAG-TTGGGGC-AAAAATCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGTA
* * *
4106102 AAAAGTTTTGAAAATCATGAAAAATAGAAAAGGAGTTGTCTTGCCATGAAACTTCACGTGAAGGC
515 AAAAG-TTTCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
*
4106167 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
579 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
* *
4106232 GTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCAGTCTCTCC-GGCTGGCG
644 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCAGTCTCTCCAGTC-GGCG
*
4106296 TAGTTCCCG-C-CT-GCT
708 TAGTGCCCGCCGCTCGCT
* * * *
4106311 CGCTTGTTTCGTCGGTTGGGTTACGCATACGCAGTTCATTCCCAGTCTAAG-AT-CGGA--C-T-
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGATTCTTC
4106370 -G-----GA-C--CGA-G-GGTTGTGGCAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCACAT
66 AGTCTAAGATCGACGACGAGGTTGTGGCAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCACAT
* * * *
4106424 TTTTCTTCACCGGGACACCATCGTCGGAGCATCGTTGGACAACCTGACCGGCTGCAATGAGGTTC
131 TTTTCTTCGCCGGG-CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCTGCAATGGGGTTC
* ** *
4106489 CGACGATCGGGAGGGCCGGGGGGGCGTGTGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCT
195 CGACGATCGGG-GGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
4106554 TATATTGGCCCACTATCCCACATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
259 TATATTGGCCC-CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
4106619 TTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAATTGGTCA
323 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCA
* * *
4106684 CAAAATCTTGTATACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGA
388 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGA
* * *
4106749 TCGCGT-TGACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT-CTCGAACCGT
453 TCACGTCT-ACCAAG-TTGGGG-CAAAAATCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGT
* * * *
4106812 GAAAAGTTATGAAAATCATGAAAAATAGAAAAGGAGTCATCTTGCCATGAAACTTCACGTGAAGG
514 AAAAAGTT-TCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
**
4106877 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGA
578 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* * **
4106942 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGTCGGCG
643 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCAGTCTCTCCAGTCGGCG
*
4107007 TAATGCCCGCCCGCCCGCCTGCCCGCT
708 T-A-G--TGCCCG-CCG-CT---CGCT
* * *
4107034 TGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCACTCCCAGTCTAAG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
4107085 ATCAAACCAG
Statistics
Matches: 2599, Mismatches: 235, Indels: 243
0.84 0.08 0.08
Matches are distributed among these distances:
701 54 0.02
702 5 0.00
703 10 0.00
704 15 0.01
705 15 0.01
706 19 0.01
707 12 0.00
708 24 0.01
709 22 0.01
710 22 0.01
711 929 0.36
712 166 0.06
713 26 0.01
714 10 0.00
715 10 0.00
716 30 0.01
717 24 0.01
718 119 0.05
719 37 0.01
720 54 0.02
721 102 0.04
722 41 0.02
723 97 0.04
724 11 0.00
725 3 0.00
727 4 0.00
728 6 0.00
729 27 0.01
730 1 0.00
731 1 0.00
733 1 0.00
734 2 0.00
738 1 0.00
739 3 0.00
741 1 0.00
744 1 0.00
747 8 0.00
748 52 0.02
749 38 0.01
750 88 0.03
751 84 0.03
752 295 0.11
753 79 0.03
754 7 0.00
755 11 0.00
756 2 0.00
758 3 0.00
759 1 0.00
760 9 0.00
761 8 0.00
762 9 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (725 bp):
CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGATTCTTC
AGTCTAAGATCGACGACGAGGTTGTGGCAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCACAT
TTTTCTTCGCCGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCTGCAATGGGGTTCC
GACGATCGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
TATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAA
AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
CGTCTACCAAGTTGGGGCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGT
TTCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCAGTCTCTCCAGTCGGCGTAGTGCCC
GCCGCTCGCT
Found at i:4107259 original size:26 final size:26
Alignment explanation
Indices: 4107217--4107269 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
4107207 GTTGACTTAG
* * *
4107217 GCATACGGAGTTGATTCCTAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
4107243 GCATACGGAGCTCATTCCCAGTGTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
4107269 G
1 G
4107270 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:4108966 original size:878 final size:881
Alignment explanation
Indices: 4106335--4109456 Score: 3960
Period size: 906 Copynumber: 3.5 Consensus size: 881
4106325 GTTGGGTTAC
* * ** *
4106335 GCATACGCAGTTCATTCCCAGTCTAAG-AT-CG-G-ACTG-GAC-CGAGGGTTGTGGCAGCACAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAGCATTGAGACTCGAGGGTTACGGTAGCACAT
* ** * * *
4106394 TCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGACACCATCGTCGGAGCATCGT
66 GCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCAT
* * * *
4106459 TGGACAACCTGACCGGCTG-CAATGAGGTTCCGACGATCGGGAGGGCCGGGGGGGCGTGTGCACA
131 CGGACAACCTGACCGAC-GACAATGAGGTTCCGACGATCGGGAGGGCC-GGGGGGTGTGCGCACA
* * *
4106523 TGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCACATCAAACCTAGAG
194 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCGAG
*
4106588 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGT
259 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * *
4106653 CTAAAATGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTATACTTTGAGTTTTTAGCTGAAT
324 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
*
4106718 TTTTTTGTGCATGCCAAAAAAAATAAAAGGATCGCGT-TGACCAAGTTTGGGGCCAAAACTCCTT
389 TTTTTTGTGCATGCCAAAAAAAATAAAAGGATCACGTCT-ACCAAGTTTGGGGCCAAAACTCCTT
4106782 CCAAAAAAATTTTAAAAAATCTCGAACCGTGAAAAGTTATGAAAATCATGAAAAATAGAAAAGGA
453 CCAAAAAAATTTTAAAAAATCTCGAACCGTGAAAAGTT-TGAAAATCATGAAAAATAGAAAAGGA
*
4106847 GTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
517 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
**
4106912 AAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
582 AAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
4106977 GGCTTGCACATCCCGTCTCTCTGGTCGGCGTAATGCCCGCCCGCCCG-CCTGCCCGCTTGCTCGT
647 GGCTTGCGCATCCCGTCTCTC-GGTCGGCGTAGTGCCCGCCCGCCCGTCC-GCCC-C-T-CTCGT
* * * * *
4107041 TTCATCGGTTGGCTTAGGCATACGGAGTTCACTCCCAGTCTAAGATCAAACCAGATCGAGGGTTA
707 TTCATCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTG
* * **
4107106 CGGCAGCAGGATCAGCAGTACAT-AGAGGGGGACTCGGTTGATCCCCGGCTTGCGCAT-CTCGCC
772 CGGCAGCAGGATCGGCAG--CATGAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCT-GCC
*
4107169 CCTCTGGCCGGCTGAGCGCCCGCACACTCG-TTCCGTGGGTTGACTTAG
834 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCC-TGGGTTGACTTAG
* *
4107217 GCATACGGAGTTGATTCCTAGTCTAAGCATACGGAGCTCATTCCCAGTGTAAGATCGGATCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAG--CA-T-----TG--AGA-C---T-----
* ** *
4107282 CGAGGGTTACGATAGCACATGAAGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCG-CTGGG
46 CGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGG
* * * *
4107346 GCACCATCGCCGGAGCATCGTCGAACAACCTGACCGGCTACAATGAGGTTCCGACGATCGGGAGG
110 GCACCATCGCCGGAGCATCATCGGACAACCTGACCGACGACAATGAGGTTCCGACGATCGGGAGG
*
4107411 GCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTA
175 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTA
* * *
4107476 TCCCGCATCAAACCTTGAGAACTCACA-CCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
240 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
4107540 TCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
305 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
4107605 TTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCGACCAAGT
370 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGT
* *
4107670 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAATTCTCGAACCGTGAAAAGTTTTGAAAATC
435 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTGAAAAG-TTTGAAAATC
4107735 ATGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
499 ATGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
4107800 TGAATTTACAAGCCATAAAAATGGCATTGGAATGTAGAAATATGAAGATGTGCCTAAACCCACCT
564 TGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCT
* *
4107865 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGATCGGCGTAGTGCCCGCCCGCCTG
629 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC-GGTCGGCGTAGTGCCCGCCCGCCCG
* **
4107930 -CC-CACCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCAT-AGTCTAAGATTGG
693 TCCGCCCCT-CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC-TCAGTCTAAGATCAG
** * * * *
4107992 ACCAGACCGAGGGTTGCGATAGCAGGATCGGCAGCACGTAGAGGAGGACCCGACCGATCCCTGGC
756 ACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCATG-AGAGGGGGACCCGGCCGATCCCCGGC
* * * *
4108057 TTGCACATCCCGCCCCTCTGGTCGGCTGAGCGCCCGTACGCTCGTTTCCTGGGTTGACTTAG
820 TTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCCTGGGTTGACTTAG
* *
4108119 GCATACGGAGTTGATTCCCAGTCTAAG-AT-C-AG-A-TG-GACT-GAGGGTTGCGGTAGCACAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAGCATTGAGACTCGAGGGTTACGGTAGCACAT
** ** * *
4108177 GCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTTAGGGTACCATCGCCGGAGCATCAC
66 GCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCAT
* ** * * * * * * *
4108242 CGGAGAACCTGACTAAAGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGATGTGTGCACAT
131 CGGACAACCTGACCGACGACAATGAGGTTCCGACGATCGGGAGGGCCGGGGGG-TGTGCGCACAT
* * *
4108307 GATGTGTGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
195 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCGAGA
* *
4108372 ACTCACACCCCCTTCAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
260 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* ** * * ** *
4108437 CGAAATGGGGACACTTTTTTCAAACAGTCACAAAATCTTATACAATTTAAGTTTTTAGCCGAATT
325 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * ** *
4108502 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCTTGTTTGGGAG-AAAAACTCCTTC
390 TTTTTGTGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGG-GCCAAAACTCCTTC
* ** * * * *
4108566 CAAAAAAATTTTAAAAAAATCCCGAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAAAAAATGA
454 CAAAAAAATTTT-AAAAAATCTCGAACCGTGAAAAGTTT-GAAAATCATGAAAAATAGAAAAGGA
* * *
4108631 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGCGACCATTGTACGAATTTACAAGCCATAA
517 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * *
4108696 AAGTGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCAC
582 AAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * *
4108761 GGCTTGCGCATCACGTCTCTGGGGCTGGCGTAGTGCCCGCCCGCCCGTTCGCCCCT-TCGGTTCG
647 GGCTTGCGCATCCCGTCTCTCGGTC-GGCGTAGTGCCCGCCCGCCCGTCCGCCCCTCTCGTTTCA
* * * * *
4108825 TCGGTTGCCTTAGGCATGCGAAGTTCATTCTCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGC
711 TCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGC
* * * * *
4108890 AGTAGGATCGGCAGCATGCATAGGGGGACCCGGCCAATCCCCGGCTCGCGCATCCTGCCCCCCTG
776 AGCAGGATCGGCAGCATG-AGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTG
* * *
4108955 GCCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAG
840 GCCGGCTGAGCGCCCGCACGCTCGTTTCCTGGGTTGACTTAG
*
4108997 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAATTTAAAGTCCGACTGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAG-------C--A-TT---G--AGACT----
* * * * *
4109062 CGAGGGTTACGGTAGCACATGCCGAGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGG
46 CGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
* * * * * * * *
4109127 AACTATCACCGGAGCATCATCGGAGAACCTGACCGATGACATTTG-GGTTCAGACGAT-GGGGGG
111 CACCATCGCCGGAGCATCATCGGACAACCTGACCGACGACA-ATGAGGTTCCGACGATCGGGAGG
* * *
4109190 GCCGAGGGGGTGTGCGCATAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
175 GCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACT
*
4109255 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCT
239 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
4109320 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCTCAAAATCTTGTACA
304 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
4109385 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGCCTACCAAG
369 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAG
*
4109450 TTCGGGG
434 TTTGGGG
4109457 ACAATCGTGA
Statistics
Matches: 1952, Mismatches: 214, Indels: 127
0.85 0.09 0.06
Matches are distributed among these distances:
875 111 0.06
876 77 0.04
877 181 0.09
878 379 0.19
879 3 0.00
880 5 0.00
881 1 0.00
882 26 0.01
883 2 0.00
884 2 0.00
885 3 0.00
886 1 0.00
888 2 0.00
889 1 0.00
892 1 0.00
894 1 0.00
895 3 0.00
897 1 0.00
898 4 0.00
899 1 0.00
900 7 0.00
901 2 0.00
902 175 0.09
903 7 0.00
904 244 0.12
905 104 0.05
906 407 0.21
907 87 0.04
908 114 0.06
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (881 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGAGCATTGAGACTCGAGGGTTACGGTAGCACAT
GCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCAT
CGGACAACCTGACCGACGACAATGAGGTTCCGACGATCGGGAGGGCCGGGGGGTGTGCGCACATG
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
TTTTGTGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
AAAAAATTTTAAAAAATCTCGAACCGTGAAAAGTTTGAAAATCATGAAAAATAGAAAAGGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
TGCGCATCCCGTCTCTCGGTCGGCGTAGTGCCCGCCCGCCCGTCCGCCCCTCTCGTTTCATCGGT
TGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAG
GATCGGCAGCATGAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGC
TGAGCGCCCGCACGCTCGTTTCCTGGGTTGACTTAG
Found at i:4109875 original size:26 final size:26
Alignment explanation
Indices: 4109839--4109891 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4109829 GTTGACTTAG
*
4109839 GCATATGGAGTCCATTCCTAGTCTAA
1 GCATATGGAGTCCATTCCCAGTCTAA
*
4109865 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTCCATTCCCAGTCTAA
4109891 G
1 G
4109892 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTCCATTCCCAGTCTAA
Found at i:4110751 original size:26 final size:26
Alignment explanation
Indices: 4110714--4110766 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4110704 GTTGACTTAG
*
4110714 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
4110740 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
4110766 G
1 G
4110767 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:4112736 original size:903 final size:892
Alignment explanation
Indices: 4109459--4112984 Score: 3928
Period size: 903 Copynumber: 4.0 Consensus size: 892
4109449 GTTCGGGGAC
** * * *
4109459 AATCGTGAAAAATAGAAAAATAGTCATCTTGCCATGAAACTTCTCATGAAGGCTTAAGGGACCAT
1 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * * * *
4109524 TGTATGAATTTACAAGTCATAAAAAGGGCAGTGGCATGCAAAAATATGAAGTTGTGCCTAAACCC
66 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCC
* * * * *
4109589 ACCTACCACCTTATCGATCCACGGCTTGCGCTTCCCGTTTTTCTGGCCGACGTAGTG--C--CCG
131 ACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGACCG
* * * * ** *
4109650 TCTGCCCG--C-TCGTTTCGTCGGATGGCTTAGGCATACGGAGTTCATTCCTAGCCTAAGATCAG
196 CCCGCCCGCCCATCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAG
* * ** ***** * * * * * *
4109712 ACCGAACCGAGGGTTACCACAACAGGATCGGCAAG-ACGCAGAGGGGGACCCGACCGATCCCCGA
261 -GCGGATTGAGGGTTGTGGTAGCAGGATCGAC-AGCATGCAGAGGGGGACACGGCCGATCCCCGG
* * * * * * * **
4109776 CTTGTGCAT-CCAGCCCCTCTGGCCGGTTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGG
324 CTTGCGCATCCCA-CCCTTCTGGCTGGCTGAGCGCCCGCAC-TTCGTTTTATGGGTTGACTTAGG
* * * * * **
4109840 CATATGGAGTCCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-C
387 CATACGGAGTTCATTCC-AGTCTAAGCATACGGAGTTAATTCCCAGTCTAAGATCGGATCAAATC
* * *** * * *
4109904 TGAGGGTTGCAGCATCACATGCTGGGCTCAGGCAGGTGCTGGTGCCGCAT-TTTTCTTCGTCGGG
451 -GAGGGTTGCGGCAGCACATGCTGGG-TC-GGGTTGTGC-GAT-TC-CATATTTTCTTCATCGGG
**
4109968 GCACCAT---C---G----TC--G-----G---ACGGCATTGGGGTTCCAACGATCGGGGGGG-C
510 GCACCATCGCCGAAGATCATCGAGAACCTGACAACGGCATTGGGGTTCTGACGATCGGGGGGGCC
* * *
4110012 GGGGGTGTGTGCGCACATGATGTGCGATGGGTACTGGTTCATGGCCCTTATATTGGCCCCCTATC
575 GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * * *
4110077 CCTCATCAAACCTCTAGAACTCACACCCCCTTAAAAAGCATTTGATATTTTACAGCTTTGCTGCC
639 CCTCATCAAACCTCGAGAACTCACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * * * *
4110142 AGTAGCTATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTATACACTT
704 AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
4110207 CAAGTTTTTAGCTGAATTTTTTTGCGCATGCCAA-AAAAATACAAGGATCATGTCTACCAAGTTT
769 CAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGGTT
* * * * * * **
4110271 GGGGCTAAAACTCCATCCAAAAAAATTTTAAAAAA-CCCTGAAACACAAAAAGTTTCCAA
834 GGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTC-GAACCATAAAAAGTTTTGAA
* *
4110330 AATCGTGAAATATAGAAAACGAGTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCAT
1 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
4110395 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCT
66 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCC
* * * *
4110460 ACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCG
131 ACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGACCG
* * * *
4110525 CCCGCCCG--C-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTTAGATCAG
196 CCCGCCCGCCCATCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAG
* * * * * * * * *
4110587 ACCGGATTGAGGGTTTTGGCAGTAGGATTGGCAGCATGCAGAGGAGGACACGGTCGATCCCCAGC
261 -GCGGATTGAGGGTTGTGGTAGCAGGATCGACAGCATGCAGAGGGGGACACGGCCGATCCCCGGC
* * ** *
4110652 TTGCGAATCCCGCCCTTCTGGCTGGCTGAGCGCCCGCACTCTCGTTTCGTAGGTTGACTTAGGCA
325 TTGCGCATCCCACCCTTCTGGCTGGCTGAGCGCCCGCACT-TCGTTTTATGGGTTGACTTAGGCA
* * * * * * *
4110717 TACGGAGTTCATTCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGACCGA
389 TACGGAGTTCATT-CCAGTCTAAGCATACGGAGTTAATTCCCAGTCTAAGATCGGATCAAATCGA
*
4110782 GGGTTGCGGCAGCACA-------T---GTTG-GC-A--CCGTATTTTTCTTCATCGGGGCACCAT
453 GGGTTGCGGCAGCACATGCTGGGTCGGGTTGTGCGATTCCATA-TTTTCTTCATCGGGGCACCAT
* *
4110833 CGCCG--G---AT----AACCTGACAAGCGGCATTGGGGTTCAGACGATCAGGGGGGCCGGGGGG
517 CGCCGAAGATCATCGAGAACCTGACAA-CGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGG
*
4110889 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATC
581 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * *
4110954 AAACCTCGAGAACTGACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCC
646 AAACCTCGAGAACTCACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
4111019 ATTAAAATGTCTAAAATGGGGACACTCTTTTTCAAATTGTCACAAAATCTTGTACACTTCAAGTT
711 ATTAAAGTGTCTAAAATGGGGACACT-TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTT
* * * ** * *
4111084 TTTACCTGAATATTTTTGTGCACGTTAACAAAAATACGAGGATCATGTCTACCAAGGTTGGGGCC
775 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGGTTGGGGCC
** * * * *
4111149 AAAGCTCCCTCCAAAAAAATTTAAAAAAATCTCAAACCATAAAACGTTTTGAA
840 AAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTTGAA
* * * *
4111202 TATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGAGCAT
1 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
** *
4111267 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCATAAACCC
66 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCC
* * * * *
4111332 ACCTACCACCCTATCGATTCACGACTTGTGCTTCTCGTTTCTCTGGCCGACGTAGTGCCC-A---
131 ACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGACCG
* *
4111393 ACCG-CC-CAC-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATT-G
196 CCCGCCCGCCCATCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAG
* *
4111454 GACCGGATCGAGGGTTGTGGCTA-CAGGATCGACAGCATGCAGA-GGGGACCCGGCCGATCCCCG
261 G--CGGATTGAGGGTTGTGG-TAGCAGGATCGACAGCATGCAGAGGGGGACACGGCCGATCCCCG
* **
4111517 GCTTGCGCATCCCACCCCTCTGGCCAGCTGAGCGCCCGTACAC-TCGTTTTATGGGTTGACTTAG
323 GCTTGCGCATCCCACCCTTCTGGCTGGCTGAGCGCCCG--CACTTCGTTTTATGGGTTGACTTAG
* **
4111581 GCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTAATTCCCAGTC-AACGATCGGACTGGA
386 GCATACGGAGTTCATTCC-AGTCTAAGCATACGGAGTTAATTCCCAGTCTAA-GATCGGA-TCAA
* * * * * *
4111645 CT-GAGGGTTGTGGCAGCAAATGCTGGGGTCGGGCATGTGCTGGTATCGCAT-TTTTCTTCGTCG
448 ATCGAGGGTTGCGGCAGCACATGCT-GGGTCGGG-TTGTGC-GAT-TC-CATATTTTCTTCATCG
** **
4111708 GGGCACCATCGATGAAGCATCGCCGGAGAACCTGACCAACGGCATTGGGGTT-TCGACGATCGGG
508 GGGCACCATCGCCGAAG-ATCATC-GAGAACCTGA-CAACGGCATTGGGGTTCT-GACGATCGGG
* *
4111772 GGGGCCGGGGGGGTTTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCC
569 GGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
4111837 CCTATCCCTCATCAAACCTTGAGAACTCACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTT
633 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
4111902 GTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGT
698 GCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
** * *
4111967 ACACTTTGACTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACC
763 ACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* *
4112032 AAGGTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAA
828 AAGGTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTTGAA
* *
4112097 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTGAAGGGACCAT
1 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
4112162 TGTATGAATTTACAAGCCATAAAAATGACATTGGCATGTAGAAATATGAAGATGTGCCCAAACCC
66 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCC
* *
4112227 GCCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGACCG
131 ACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGACCG
** *
4112292 CCCGCCCGCCCATTCGTTTCGTCGGTTGGCTTAGGTTTACGGAGTTCATTCCCAATCTAAGCTTA
196 CCCGCCCGCCCA-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTA
*** * * * * *
4112357 GGTTAATTGAGGGTTGCGGTAGCAGGATCGACAACATGCAGAGGGGGACTCGGCCGATCCCTGGT
260 GGCGGATTGAGGGTTGTGGTAGCAGGATCGACAGCATGCAGAGGGGGACACGGCCGATCCCCGGC
* * *
4112422 TTGCGCATCCCACCCTTTTGGCTGGCTGAGCGCCCGCACGTTCATTTTATGGGTTAACTTAGGCA
325 TTGCGCATCCCACCCTTCTGGCTGGCTGAGCGCCCGCAC-TTCGTTTTATGGGTTGACTTAGGCA
* *
4112487 TACGGAGTTCATTCTCAGTCTAAGCAAACGGAGTTTATTCCCAGTCTAAGATCGGATCAAATCGA
389 TACGGAGTTCATTC-CAGTCTAAGCATACGGAGTTAATTCCCAGTCTAAGATCGGATCAAATCGA
* *
4112552 GGGTTGCGACAGCACATGCTGGGCTCGGGTTTGTGCGATTGCCATATGTTTCTTCATCGGGGTAC
453 GGGTTGCGGCAGCACATGCTGGG-TCGGG-TTGTGCGATT-CCATAT-TTTCTTCATCGGGGCAC
* * *
4112617 CATCGCCGAAGAATCATCGAAGAACCTGATCGACGACATTGGGGTTCTGGCGATCGGGGGGGCCG
514 CATCGCCGAAG-ATCATCG-AGAACCTGA-CAACGGCATTGGGGTTCTGACGATCGGGGGGGCCG
* * *
4112682 GGTGGGTGTGCGCACATGATGTGTGATGGTTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCC
576 GG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
4112747 CTGATCAAACCTCAAGAACTCACACCCCCA-TAAAGAGCATTTGAGATTTTACAGGTTTGCTTCC
640 CTCATCAAACCTCGAGAACTCACA-CCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *** *
4112811 AGTAGCCATTAAAGTGTCCAAAATGGCGACAAGGTTTTCAAAAGGTCACAAAATCTTGTACACTT
704 AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * * *
4112876 CGAGTTTTTAGCTGAATTTTTTTATGCAAGCCAACAAAAATACAATGATCACATCTACCAAGTTT
769 CAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-GT
*** * *
4112941 TGGGGCCAAAAATCCTTTTGAAAAAATTTTAAAAAGTCACGAAC
833 TGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAAC
4112985 GCCCGTTCGT
Statistics
Matches: 2263, Mismatches: 295, Indels: 161
0.83 0.11 0.06
Matches are distributed among these distances:
856 2 0.00
857 1 0.00
858 20 0.01
861 1 0.00
862 3 0.00
863 2 0.00
866 5 0.00
867 135 0.06
868 83 0.04
869 5 0.00
870 168 0.07
871 232 0.10
872 244 0.11
873 3 0.00
874 2 0.00
875 224 0.10
876 5 0.00
878 1 0.00
879 2 0.00
880 2 0.00
884 23 0.01
885 1 0.00
886 3 0.00
895 342 0.15
896 155 0.07
899 3 0.00
900 2 0.00
901 11 0.00
902 45 0.02
903 486 0.21
904 52 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCC
ACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGACCG
CCCGCCCGCCCATCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAG
GCGGATTGAGGGTTGTGGTAGCAGGATCGACAGCATGCAGAGGGGGACACGGCCGATCCCCGGCT
TGCGCATCCCACCCTTCTGGCTGGCTGAGCGCCCGCACTTCGTTTTATGGGTTGACTTAGGCATA
CGGAGTTCATTCCAGTCTAAGCATACGGAGTTAATTCCCAGTCTAAGATCGGATCAAATCGAGGG
TTGCGGCAGCACATGCTGGGTCGGGTTGTGCGATTCCATATTTTCTTCATCGGGGCACCATCGCC
GAAGATCATCGAGAACCTGACAACGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGC
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGC
TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGGTTGGGGCCAAAAAT
CCTTCCAAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTTGAA
Found at i:4113989 original size:26 final size:26
Alignment explanation
Indices: 4113960--4114012 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
4113950 GTAGACTTAG
* *
4113960 GCATACGGACTTCATTCCTAGTCTAA
1 GCATACGGACTTCACTCCCAGTCTAA
* *
4113986 GCATATGGAGTTCACTCCCAGTCTAA
1 GCATACGGACTTCACTCCCAGTCTAA
4114012 G
1 G
4114013 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGACTTCACTCCCAGTCTAA
Found at i:4114172 original size:12 final size:12
Alignment explanation
Indices: 4114155--4114185 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
4114145 GAGATTTTAC
4114155 TTGGCCCTTATA
1 TTGGCCCTTATA
4114167 TTGGCCCTTATA
1 TTGGCCCTTATA
4114179 TTGGCCC
1 TTGGCCC
4114186 CATATCCCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.29, G:0.19, T:0.39
Consensus pattern (12 bp):
TTGGCCCTTATA
Found at i:4114868 original size:26 final size:26
Alignment explanation
Indices: 4114830--4114883 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
4114820 TGGGTTGACT
*
4114830 TAGGCATATGAAGTTCATTCCCAGTC
1 TAGGCATACGAAGTTCATTCCCAGTC
*
4114856 TAGGCATACGAAGTTCATTCCTAGTC
1 TAGGCATACGAAGTTCATTCCCAGTC
4114882 TA
1 TA
4114884 AGATCAGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (26 bp):
TAGGCATACGAAGTTCATTCCCAGTC
Found at i:4116323 original size:891 final size:893
Alignment explanation
Indices: 4113299--4122300 Score: 11077
Period size: 894 Copynumber: 10.1 Consensus size: 893
4113289 CATCATTGGC
* **
4113299 ACTTGACCCTTATATT-GGCCCCTTATCCCTCATCAAACCTCGAGAACTCATGCCCCCTTAAAGA
1 ACTTGGCCCTTATATTGGGCCCC-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
4113363 GCATTTAAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
65 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
* *
4113428 TCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAA
130 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAA
*
4113493 AAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
194 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* *
4113558 CCGAACCGTAAAAAGTTTAAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
259 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* *
4113623 ACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
324 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
*
4113688 ATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTC
389 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * *
4113753 TGGTCGGC--A-T-AG--AGCCCG-CC-T--GCCCGCTCGTTTCGTCGATTGGCTTAGGCATACG
454 TGGCCGGCGTAGTGCGCCAGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * ** ** * *
4113808 GTGTTAATACCCAGTCTAAGATC-AGACCGGATTGAGGGTTG-GAATAGCAGGATTAGCAGCATG
519 GAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGTG-GCAGCAGGATTGGCAGCACG
* * * * * * ** * * *
4113871 TAGAAGAGGACCAG-GCTGATCCCCAGCTTGTACATCCCGCCCCTTTGGTCGGCTGAGCGCCCGT
582 CAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG-CCGC
* * *
4113935 ACGCTCGTTTCGTGGGTAGACTTAGGCATACGGACTTCATTCCTAGTCTAAGCATAT-GGAGTTC
645 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT-TCGGAGTTC
* * * * * * * *
4113999 ACTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGTAGCACATTCTAGGCTCGGGCATGGGC
709 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* * ** *
4114064 TGGTGCCGCATTTCTCTT---C--G-----TC-G----GG-GAACCTGACCGGTGGCATTAGGGT
774 TGGTGCAGCATTTTTCTTCGCCGGGCACCATCGGCATCGGAGAACCTGACCGACGGCATTGGGGT
* ** *
4114113 TCCGACGATC-GGGGGC-------TGTGCGCACATGATGTGAGAT-TTTACTTGGCCCTT
839 TCCGACGATCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC-TGG----T
* *
4114164 ATATTGGCCCTTATATT-GGCCCCATATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
1 A-CTTGGCCCTTATATTGGGCCCC-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
4114228 AGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
64 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTT
* *
4114293 TTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCTTGCCAACA
129 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACA
*
4114358 AAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTAAAAAAT
193 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * *
4114422 CTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
258 CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
4114487 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCACGTAGA
323 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* * * *
4114552 AATATGAAGGTGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGTGCATCCTGTCTCT
388 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * * *
4114617 CTGGCCAGCGCAGT--GCCTGCCCGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
453 CTGGCCGGCGTAGTGCGCCAGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * *
4114680 GGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGTGTTGTGGCAGCATGATTGGCAGCATGC
518 GGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCAGGATTGGCAGCACGC
* ** * * * *
4114745 AGAGGGGGACCCG-GCTGATCCATGGCTTCCCCATCCCGCCCCTCTGGCCGACTGAGCACCCGCA
583 AGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC-GCCGCA
* * * * * *
4114809 CGCTCATTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAGGCATACGAAGTTCAT
646 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATTCGGAGTTCAT
* * * * * *
4114874 TCCTAGTCTAAGATCAGACCAGACCGAGTGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTG
711 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * *
4114939 GTGCCA-CATTTTTCTTCGTCGAGGCACCATCACAGGAGCATCGTCAGATAACCTGATCGACAGC
776 GTG-CAGCATTTTTCTTCGCCG-GGCACCAT--C--G-GCATCG---GAGAACCTGACCGACGGC
* * *
4115003 ATTGGTGTTCCGACGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTCGT
831 ATTGGGGTTCCGACGATCGG-GGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * *
4115068 ACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAG
1 ACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
4115133 CATTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
66 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
* * *** *
4115198 CAAATGGTCACAAAAT-TTGTACACCTCGAGTTTTTAGCTGAATTTTTTTGCGCATAATAAAAAA
131 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAA
* * *
4115262 AATACGAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCC
195 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * *
4115327 CAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTC-
260 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * *
4115391 CTGTGAAGACTTAAGGGAACATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCA-AA
325 C-GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
*
4115455 ATTTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
389 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
4115520 TGGCCGGCGTAGTGCCCGCCAGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
454 TGGCCGGCGTAGTG--CGCCAGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * *
4115585 CGGAGTTCATTTCCAGTCTAAGACCGAACCCGACCGAGGGTTGTGCCAGCATGATTGGCAGCACG
517 CGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCAGGATTGGCAGCACG
* * * * * * * *
4115650 CAGAGGGGGACCCGATCGATCCTCGGCTTGCACATCTCGCCCCTCTAGACGGCTAAGTG-CGCAT
582 CAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCGCAC
**
4115714 GCTTTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATTCGGAGTTCATT
647 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATTCGGAGTTCATT
* ** * **
4115779 CCCAGTCGAAGATCGGGTCGGACCGAGGGTTGCGGCAGCACATACTGGGCTCAAGCATGTGCTGG
712 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
*
4115844 TGCAGCATTTTTCTTCGCCGGGCACCATC-GC-T-GGAGAACCTGACCGACGGCGTTGGGGTTCC
777 TGCAGCATTTTTCTTCGCCGGGCACCATCGGCATCGGAGAACCTGACCGACGGCATTGGGGTTCC
* * * *
4115906 GGCGATCGGGGGGCTGGGGGGTGTGCGAAAATGATGTGCGATGGGTGCTGGT
842 GACGATCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
4115958 ACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAG
1 ACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * *
4116023 CATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCCAAAATGGCGACACTTTTTT
66 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
* *
4116088 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTTTGCATGCAAACAAA
131 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAA
*
4116153 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCC
195 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * *
4116218 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCGTGAACCTTCA
260 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
4116283 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAGA
325 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* *
4116348 TATGAAGATGTGCCT-AACCCACCTACCACCCTATCGATACACGGCTTGCGCATCCCGTCTCTTT
390 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* *
4116412 GGCCGGCATAGTGC-CC-GCCCGCCCGT--------TGGTTTCGTCGGTTGGCTTAGGCATACGG
455 GGCCGGCGTAGTGCGCCAGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * ** * * * ** *
4116467 AGTTCATTCCCAGTCTAAGAAT-GGACTGGACTGAGGGTTACGACAGTAGGATCGATAGCACGTA
520 AGTTCATTCCCAGTCTAAG-ATCGAACCGGACCGAGGGTTGTGGCAGCAGGATTGGCAGCACGCA
* * *
4116531 GAGGGGG-CCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCAGG
584 GAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG-CCGCACG
*
4116595 CTCGTTTCATGGGTTGAC-T-----TA--G-G--------CA---T----A--CGGAGTTCATTC
648 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATTCGGAGTTCATTC
4116634 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
713 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * *
4116699 GCCGCATTTTTCTTTGCCGGGGCACCATCGTCGGAGCATTGTCGGAGAACCTGATCGGCGGCTTT
778 GCAGCATTTTTCTTCGCC-GGGCACCA---TC-G-GCA---TCGGAGAACCTGACCGACGGCATT
* * *
4116764 GGGGTTCTGACGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATCGATGCTGGT
834 GGGGTTCCGACGATC-GGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * *
4116826 A-TTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCGCCTTAAAGAG
1 ACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * *
4116890 CATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTC
66 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
*** *
4116955 CAAATGGTCACAAAATCTTGTACACTTTTCGTTTTTAGCTGAAATTTTTGGTGCATGCCAACAAA
131 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTGTGCATGCCAACAAA
* * * * *
4117020 AATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTGCTTCCCAAAAAATTTTGAAAAATCT
195 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * * * * *
4117085 CAAACGGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTTGTCTTGCCATGAAACTTAA
260 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * ***
4117150 TGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCATATAGAAA
325 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* * * *
4117215 TATGAAGATTTGCCTAAACCCACCTACCACCCTGTCGATCCACGGCTTGTGCATCCTGTCTCTCT
390 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
4117280 GGCTGACGTAGTGCCCGCCCGCCTGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
455 GGCCGGCGTAGTG--CGCCAGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * *
4117345 GGAGTTCATTTCCAGTCTAAGATCAAACCGGACCGAGGGTTGTGCCAGCAGGATTGGCAGCACGC
518 GGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCAGGATTGGCAGCACGC
* * *
4117410 AGAGGGGGACCCGATCAGATCCTCGGCTTGCGCATCCCG-CCCTCTGGTCGGCTTAGCGCGCGCA
583 AGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC-CGCA
* ** *
4117474 TGCTTTTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATTCGGAGTTCAT
646 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATTCGGAGTTCAT
* * * * *
4117539 TCCCAGTCGAAGATCGGACCAGACCGAGGGTTCCGGTAGCACATACTGGGCTCGGGCATGTGCTG
711 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * *
4117604 GTGCAGCATTTTTCTTCGTCGGGCACCATC-AC-T-GGAGAACCTGACCGACGGCGTTGGGGTTC
776 GTGCAGCATTTTTCTTCGCCGGGCACCATCGGCATCGGAGAACCTGACCGACGGCATTGGGGTTC
* * * *
4117666 TGGCGATCGGGGGGCCGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGT
841 CGACGATCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
4117719 ACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
1 ACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * *
4117784 CATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCCAAAATGGCGACACTTTTTT
66 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
* *
4117849 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTTTGCATGCAAACAAA
131 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAA
*
4117914 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCC
195 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * * *
4117979 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCGTGAACCTTCA
260 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
4118044 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATGGCATTGGCACGCAGAGA
325 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* *
4118109 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTTT
390 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * *
4118174 AGCCGGCCTAGT--G--A--CCG--C--CCGCCCGTTGGTTTCGTCGGTTGGCTTAGGCATACAG
455 GGCCGGCGTAGTGCGCCAGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * ** ** * * **
4118229 AGTTCATTCCTAGTCTAAAATCGGACCGGACTAAGGGTTGCAGCAGCAGCATCGGCAGCAAACAG
520 AGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCAGGATTGGCAGCACGCAG
* * * * *
4118294 AGGGGGACCC-AGCCGATCCCCGGCTTGCGCATCTCGTCCCTCTGGCCGGCTGAGCACCAGCACA
585 AGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC-GCACG
* * * **
4118358 CTCATTTCGTGGGTTAACTTAGGCATACGGAGTTAATTCCTTGTCTAAGCATAT-GGAGTTCATT
648 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT-TCGGAGTTCATT
* * *
4118422 CCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGG
712 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
** *
4118487 TGCTA-CATTTTTCTTCATCGGGGACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
777 TGC-AGCATTTTTCTTCGCCGGGCACCA---TC-G-GCA---TCGGAGAACCTGACCGACGGCAT
* * *
4118551 TGGGGTTCCGATGATCGGGGGGCCGGGGGGGTGTGCGCACAAGATGTGCAATGGGTGCTGGT
833 TGGGGTTCCGACGATCGGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* ** *
4118613 GCTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCACCTTAAAGAG
1 ACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* ** *
4118678 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCCGAAATGGGGAAACTTTTTT
66 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
* * * *
4118743 CAAATGGCCACAAATTCTTGTACACTTTGAGTTTTTAGCTGAATTATTTTGTGTATGCCAACAAA
131 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAA
* * *
4118808 AATACAAGGATCACGTCTACCAAGTTTGGCGCCAAAACTACTTCCGAAAAAATTTAAAAAAATCC
195 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * * * * * *
4118873 TGAACCGCAAAAAGTTTCAAAAATCATGAAAAATACAAAATGAGTCATCTTGCCATGAAACTTCT
260 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * *
4118938 CGTGAAGGCTTAAGGAACCATTGTATGAATTTAGAAGCTATAAAAATGGCATTGGCACACAGAAA
325 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
*
4119003 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTT
390 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * **
4119068 GGCCGGCATAGTGC-CC-GCCCGCCCG-CTCGCCCGCTCGTTTCATCAGTTGACTTAGGCATATA
455 GGCCGGCGTAGTGCGCCAGCCCGCCCGTC-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * * *
4119130 GAGTTCATTCCCAGTCTAAGATC-AGACCGGATCGGGGGTTGAGGTAGCAAGATTGGCAGCACAC
519 GAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGTGGCAGCAGGATTGGCAGCACGC
* * * *
4119194 AGAGGGGGATCTGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCAC
583 AGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG-CCGCAC
* * * * * *
4119259 CCTCGTTTCCTGGATTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
647 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATTCGGAGTTCATT
* * * ** *
4119324 TCCAGTCTAAGATCGGACCGGACCGAGTGTAGCGGCAGCACATGCTACGCTTGGGCATGTGCTGG
712 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
*
4119389 TGCCA-CATTTTTCTTCGTCGGGGCACCATC-G--TCGGAGAACCTGACCTG-CGGCATTGGGGT
777 TG-CAGCATTTTTCTTCG-CCGGGCACCATCGGCATCGGAGAACCTGACC-GACGGCATTGGGGT
* * *
4119449 TTCGACGATCGGGGGGCCGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGAT
839 TCCGACGATCGGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
4119505 ACTTGGCCCTTATATT-GGCCTCCTATCCCTCATCAAACCTCGAGAACTCAAACCCCCTTAAAGA
1 ACTTGGCCCTTATATTGGGCC-CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
4119569 GCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
65 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
* *
4119634 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTGCATGCCAATAA
130 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAA
* * ** *
4119699 AAATACAAGGATCATGTCTACCAAGCTCAGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
194 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* *
4119764 CCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAACTTC
259 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
4119829 ACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCACACAAAA
324 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* * * *
4119893 ATATGAAGATGTGCCTAAACCCACTTACCACCATATCGATCCACGGCATGCGCATCCCGCCTCTC
389 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * *
4119958 TGGCCGACGTAGTGC-CC-GCCCGTCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
454 TGGCCGGCGTAGTGCGCCAGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* ** ** ** * * * * *
4120021 GAGTTCATTCCCAGTCTAAGAT-TAGACCATATTGAGGGTTACGGTAGTAGGATCGGTAGCACGT
519 GAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGTGGCAGCAGGATTGGCAGCACGC
* ** * *
4120085 AGAAGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTAGCTAAGTGCCCGCAC
583 AGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG-CCGCAC
** *
4120150 GCTCGTTTAATGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGCATAT-GGAGTTCAT
647 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT-TCGGAGTTCAT
* * * * *
4120214 TCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCACATACTGGGCTTGGGCATGTGCTG
711 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* ** *
4120279 GTGCCGCATTTTTCTTCGTTGAGGCACCATCGTCGGAGCATCATCGAAGAACCTGACCGACGGCA
776 GTGCAGCATTTTTCTTCGCCG-GGCACCA---TC-G-G---CATCGGAGAACCTGACCGACGGCA
* * * * * * *
4120344 TTGGGGTTCTGGCAACCAGGGGGCCGGGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGAT
832 TTGGGGTTCCGACGATC-GGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * * *
4120407 AGTTGGCCCTTATATT-GGCCCCGTATCTCTCATCAAACCTCCAAAACTCACACCCCTTTAAAGA
1 ACTTGGCCCTTATATTGGGCCCC-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
4120471 GCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTCAAGTGTCTAAAATGGGGACACTTTTT
65 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
*
4120536 TCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
130 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAA
* * * *
4120601 AAGTACAAGGATCATGTCTACCAAGTTTGGGTCCAAAACTCCTTCC-AGAAAATTTTTAAAAAAT
194 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA-AAAAATTTTAAAAAAT
* ** * *
4120665 CTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAATT
258 CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
4120730 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
323 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* * * *
4120795 AAAATGAAAATGTGCCTAAACCCACCTACCACCCTATCAATCCACGTCTTGCGCATCCCGTCTCT
388 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* *
4120860 TTGGCCGACGTAGTGC-CCA-CCCG--C--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
453 CTGGCCGGCGTAGTGCGCCAGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * *** * * *
4120919 GGAGTTCATTCCCAGTCTATGATC-AGACCAGACCGAGGGTTACAGCAGCAAGATCGGTAGCACG
518 GGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGTGGCAGCAGGATTGGCAGCACG
* * * *
4120983 CAGAGGGGGACCCGA-CTGATCCTCAGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGC
582 CAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG-CCGC
** * * * * *
4121047 ACGCTTTTTTCATGGGTTTACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAATTCA
645 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATTCGGAGTTCA
* * * * * *
4121112 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTTGGTCATTTGCT
710 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * *
4121177 GGTGCCA-CATTTTTCTTCACCAGGGCACCATCACCGGAGCATCGTCAGAGAACTTGACCGGCGG
775 GGTG-CAGCATTTTTCTTCGCC-GGGCACCAT---C-G-GCATCG---GAGAACCTGACCGACGG
* *
4121241 CATTGGGGTTCCTG-TGATCGGGGGGTC-GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGG
830 CATTGGGGTTCC-GACGATCGGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
4121304 T
893 T
*
4121305 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
1 ACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
4121370 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTT
66 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
4121435 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATCTTTTTGTGCATGCCAACAAA
131 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAAA
* * *
4121500 AATACAACGATCACGTCTACCAAGTTTGGGG-CTAAACTCCTTCCGAAAAAATTTTAAAAAATCT
195 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* *
4121564 CGAATCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
260 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
4121629 TGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAA
325 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* *
4121694 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCATT-TGCATCCTGTCTCTC
390 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC-TTGCGCATCCCGTCTCTC
* * * * * *
4121758 TGGCTGGTCGTAGTGC-CC-GCCTGCCCGT----CCGCTTGTTTCGTCGGTTGGCTTACGCTTAT
454 TGGCCGG-CGTAGTGCGCCAGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* *
4121817 GGAGTTCATTGCCAGTCTAAGATCGAACCCGACCGAGGGTTGTGGCAGC---A-T----GCA-G-
518 GGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCAGGATTGGCAGCACGC
* * * * * * *
4121872 AGA--GGGACCC-AGCCTATCCCCGACTTGTGCATCCCGCCCCTCTAGCTGGCTGAGAGCCCGCA
583 AGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG-CCGCA
* * * * *
4121934 TGCTCATTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
646 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATTCGGAGTTCAT
* * * * *
4121999 TCCCAATCTAAGATCAGACCGGATCGAGGGTTACGGCAGCACATGCTAGGCTCGGGCATGTGCTG
711 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * *
4122064 GTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGATAACCTGACCGACGGCA
776 GTGCAGCATTTTTCTTCG-CCGGGCACCAT---C-G-GCAT---CGGAGAACCTGACCGACGGCA
* * * *
4122129 TTGGGGTTCTGGCGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGA
832 TTGGGGTTCCGACGATC-GGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
4122192 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGGG
1 ACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
4122257 CATTTGAGATTTTACACGTTTGCTGCCAGTAGCCATTAAAGTGT
66 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
4122301 ATGAATTTAC
Statistics
Matches: 7088, Mismatches: 829, Indels: 418
0.85 0.10 0.05
Matches are distributed among these distances:
854 87 0.01
855 8 0.00
856 1 0.00
858 2 0.00
860 1 0.00
861 2 0.00
863 2 0.00
865 201 0.03
866 262 0.04
867 367 0.05
868 94 0.01
869 5 0.00
870 3 0.00
871 3 0.00
872 10 0.00
873 247 0.03
874 4 0.00
876 1 0.00
878 40 0.01
879 86 0.01
880 105 0.01
881 65 0.01
882 273 0.04
883 2 0.00
884 2 0.00
885 5 0.00
886 223 0.03
887 162 0.02
888 6 0.00
889 5 0.00
890 180 0.03
891 656 0.09
892 452 0.06
893 82 0.01
894 888 0.13
895 35 0.00
896 8 0.00
897 215 0.03
898 359 0.05
899 315 0.04
900 12 0.00
901 8 0.00
902 815 0.11
903 385 0.05
904 138 0.02
905 1 0.00
906 154 0.02
907 88 0.01
908 21 0.00
909 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (893 bp):
ACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGGCGTAGTGCGCCAGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCAGGATTGGCAGCACGCAGA
GGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATTCGGAGTTCATTCCCA
GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCA
GCATTTTTCTTCGCCGGGCACCATCGGCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
ATCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
Found at i:4118416 original size:26 final size:26
Alignment explanation
Indices: 4118380--4118432 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
4118370 GTTAACTTAG
**
4118380 GCATACGGAGTTAATTCCTTGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
* *
4118406 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
4118432 G
1 G
4118433 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:4119319 original size:26 final size:26
Alignment explanation
Indices: 4119282--4119334 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
4119272 ATTGACTTAG
4119282 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
4119308 GCATAC-AGAGTTCATTTCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
4119334 G
1 G
4119335 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:4120209 original size:26 final size:26
Alignment explanation
Indices: 4120173--4120225 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4120163 GTTGACTTAC
4120173 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
4120199 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4120225 G
1 G
4120226 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4121102 original size:26 final size:26
Alignment explanation
Indices: 4121072--4121124 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4121062 GTTTACTTAG
*
4121072 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
*
4121098 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
4121124 G
1 G
4121125 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:4121987 original size:26 final size:26
Alignment explanation
Indices: 4121958--4122010 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4121948 GTTGACTTAG
* *
4121958 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
4121984 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
4122010 G
1 G
4122011 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:4124711 original size:900 final size:901
Alignment explanation
Indices: 4122625--4129295 Score: 9026
Period size: 900 Copynumber: 7.4 Consensus size: 901
4122615 ACTTAGGCAT
*
4122625 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * *
4122690 AGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAA-CT
66 AGCATGTGCTGGTGCCGCATTTTTCTTCGCAGGGGCACCATCGTCGGAGCATCACCGGAGAACCT
* * *
4122754 AGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCCAAGGGGGTGTGCGCACATAATGTGCGA
131 -GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGA
* *
4122819 TGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACC
194 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
4122884 CCCTTAAAGAGCATTTGAGACTTTACAGGTTTGCTGCCAGTAGCCATTTAAGTGTCTGGAATGGG
259 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
4122949 GACACTTTTTTCAAATGGTCACAGAATCTTGTACACTTCGAGTTTTTACCTGAATTATTTTGTGC
324 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
4123014 ATGCCAACAAAAATACAAGGATGACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATT
389 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * *
4123079 TTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
454 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
4123144 ATGAAACTTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
519 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
4123209 TCATGCAAAAATATGAAAATGTGCCTAAACCCACCTA-CAACCTATCGATCCACGGCTTGCGCAT
584 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
4123273 CTCGTCTCTCTGGCCGGTGTAGTGCCCGACCGCCC-ACCT--GCTCGTTTCGTCGGTTGGCATAG
649 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCCCTCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
4123335 GCATACAGAGCTCATTC-CTAGTCTAAGATCAGATCGGACTGAGGGTTGTAGCAGCAGGATCGAC
714 GCATACAGAGTTCATTCAC-AGTCTAAGAT-TGACCGGACCGAGGGTTGTAGCAGCAGGATCGGC
* * * * * *
4123399 AGCACCCAGAGAGGGACCCGATCGATCCCTGACTTGCGCATCCTGCCCCTCTGGCTGACTGAGCG
777 AGCACGCAGAGAGGGACCCGATCGATCCCCGGCTTGCGCATCC-CCCCCTCTGGCCGGCTGAGCG
* *
4123464 CCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGAAG-TTCATTCCCAGTCTAAGCATA
841 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGATTCATTCCCAGTCTAAGCA-A
* * *
4123525 A-GTAGTTCATTCCCAGTCTAAGATCAGACCGGACGGAGGGTTGCGGCAGCACATGCTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
*
4123589 AGCATGTGCTGGTGCCGCATTTTTCTTCGCCA-GGGCACCATCGTCGGAGCATCGCCGGAGAACC
66 AGCATGTGCTGGTGCCGCATTTTTCTTCG-CAGGGGCACCATCGTCGGAGCATCACCGGAGAACC
* * *
4123653 TGACCGACGGCATTGGGGTTCCGGCAATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGGT
130 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
*
4123718 GGGTGCTGGCACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
195 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
4123782 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTTAAGTGTCTGAAATGGGG
260 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
4123847 ACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTCTTTTGTGCA
325 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
4123912 TGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAGATTT
390 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* *
4123977 TGAAAAATCCCGAGCCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
455 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
4124042 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATACAAATGGCATTGG
520 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
4124107 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
585 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
4124172 CCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCTCTCTCCCGCTCGTTTCATCAGTTGGCTTAG
650 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCCCT-CCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
4124237 GCATACAGAGTTCATTCACAGTCTAAGATTGACCGGACCGAGGGTTGTGGCAGTAGGATCAGTAT
714 GCATACAGAGTTCATTCACAGTCTAAGATTGACCGGACCGAGGGTTGTAGCAGCAGGATCGGCAG
* * * *
4124302 TACACAGAGAGGGACCCGATCGATCCCCGGCTTGCGCATCCCCCCTTCTGGCCAGCTGAGCGCCC
779 CACGCAGAGAGGGACCCGATCGATCCCCGGCTTGCGCATCCCCCCCTCTGGCCGGCTGAGCGCCC
* * * *
4124367 GCAAGCTCGTTTCGTGGGTTGAATTAGGTATACGGAGATT-ATTCCCAATCTAAGCAA
844 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGATTCATTCCCAGTCTAAGCAA
* * * * **
4124424 ATGGAGTTCATTCTCAGTCTAAGATCGGACCAGACCGATGGTTGCAACAGCACATGCTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * * **
4124489 AGCATGTGCTGATGTCGCATTTTTCTTCGTAGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
66 AGCATGTGCTGGTGCCGCATTTTTCTTCGCAGGGGCACCATCGTCGGAGCATCACCGGAGAACCT
* * *
4124554 GACCGACGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGGTG
131 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
4124619 GGTGCTGGTACTTGG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
196 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
4124683 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTTAAGTGTCTGAAATGGGGA
261 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
4124748 CATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTCTTTTGTGCAT
326 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
*
4124813 GCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
391 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* **
4124878 GAAAAATCCC-AAGCCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
456 AAAAAATCCCGAA-CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
4124942 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATACAAATGGCATTGG
520 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
4125007 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTTGCGCATC
585 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * *
4125072 CCGTCTCTTTGGTCGGCGTAGTGCCCGCCCGTCCTCTCGCACGCTCGTTTCGTCAGTTGGCTTAG
650 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCCCTC-CGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
4125137 GCATACGGAGTTCATTCACAGTCTAAGATTGGACTGGACCGAGGGTTGTGGCAGCAGGATCTGTA
714 GCATACAGAGTTCATTCACAGTCTAAGATT-GACCGGACCGAGGGTTGTAGCAGCAGGATCGGCA
* * ** *
4125202 GCATGCAGAGAGGGACCCGATCAATCCCCGGCTTGCGCATCCCCACTTTCTGGTCGGCTGAGCGC
778 GCACGCAGAGAGGGACCCGATCGATCCCCGGCTTGCGCATCCCC-CCCTCTGGCCGGCTGAGCGC
*
4125267 CCGCACGCTCGTTTCGTGGGTTGACTTAGGTATACGGAGA-TCATTCCCAGTCTAAGCAA
842 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGATTCATTCCCAGTCTAAGCAA
*
4125326 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTC
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC-TC
** * *
4125391 -AGCATGTGCTAATGTCGCATTTTTCTTCGCAGGGGCACCATCGCCGGAGCATCACCGGAGAACC
65 GAGCATGTGCTGGTGCCGCATTTTTCTTCGCAGGGGCACCATCGTCGGAGCATCACCGGAGAACC
* * *
4125455 TGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGTCGGGGGGTGTGCGCACATGAAGTGCGAT
130 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* * *
4125520 GCGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTTGAGAACTCACACCC
195 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
4125585 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCATTAAAGTGTCTGGAATGGGG
260 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
4125650 ACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
325 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
4125715 TGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAATTTT
390 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
** * * * *
4125780 TAAAATTTCTCGAGCCGT-AAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTAGCCA
455 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
4125844 TGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATGTACAAGCCATAAAAATGGCATTGG
520 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
4125909 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACTAGCCTATCGATCCACGACTTTCGCATC
585 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * *
4125974 CCGTCTCTCGGGTCGGCGTAGTGCCCTCCCGTCCTCCCGCCCGCTCGTTTCGTCGGTTAGCTTAG
650 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCCC-TCCGCTCGTTTCGTCGGTTGGCTTAG
* * ** * * * *
4126039 GCATACGGAGTTCATTCACAGTCTAAGATCGACCAAACCGAGGGTTGTGGCACCAGGATTGGTAG
714 GCATACAGAGTTCATTCACAGTCTAAGATTGACCGGACCGAGGGTTGTAGCAGCAGGATCGGCAG
* * * ** *
4126104 CACGCGGGGAGGGACCCGATCAATCCCCGGCTTGCGCATCCCCCTTTCTGGCCGACTGAGCGCCC
779 CACGCAGAGAGGGACCCGATCGATCCCCGGCTTGCGCATCCCCCCCTCTGGCCGGCTGAGCGCCC
* * *
4126169 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGA-TCATTCACAGTCTAAGCAT
844 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGATTCATTCCCAGTCTAAGCAA
4126226 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * * ** * *
4126291 AGCATGTACTGGTGCCGCATTTTTCTTCGCAGGGGCACCATCGCCAGAGCATCGTCGAAGAACCA
66 AGCATGTGCTGGTGCCGCATTTTTCTTCGCAGGGGCACCATCGTCGGAGCATCACCGGAGAACCT
* * ** *
4126356 GACTGAAGGCATTGGGGTTCCGGTGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
131 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
*
4126421 GGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
196 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
4126486 CATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCATTAAAGTGTCTGAAATGGGGA
261 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
4126551 CACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGTGCAT
326 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
*
4126616 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACT-CTT--GAAAAAATTTT
391 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* ** * *
4126678 AAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAAAAGAAAACGAGTCATCTTGCCAT
456 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
4126743 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
521 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*
4126808 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCACGGCTTGCGCATCC
586 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * * *
4126872 CGTCTCTCTTGCCGGCGTAGTGCCCACACGCTCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGG
651 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCCC-TCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * * * * * * ** * *
4126937 CATGCGGAATTAATTCCCAATCTAAAATTGGACTGAACCAAGGGTTGCAGTTGCAGGATCGACTG
715 CATACAGAGTTCATTCACAGTCTAAGATT-GACCGGACCGAGGGTTGTAGCAGCAGGATCGGCAG
* * ** * *
4127002 CACGTAGAGGGGGAATCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGTCGGCTGAGCGCC
779 CACGCAGAGAGGGACCCGATCGATCCCCGGCTTGCGCATCCC-CCCCTCTGGCCGGCTGAGCGCC
* * *
4127067 CGTACGCTCAG-TTCGTGGGTTGACTTAGGCATACGGAG-TTCATTACCAGTCTAAGCAT
843 CGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGATTCATTCCCAGTCTAAGCAA
* * * * * *
4127125 ACGGAGTTCATTCACAGTCTAAGATCAGATCAGACCGAGGGTTACGGTAGCACATGCTAGGCTTG
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * * * *
4127190 GGCATGTGCTGGTGCTGCATTTTTCTTCATC-GAGGCACCATCGCCGGAGCATCACCGGAGAACC
66 AGCATGTGCTGGTGCCGCATTTTTCTTC-GCAGGGGCACCATCGTCGGAGCATCACCGGAGAACC
* * ** * *
4127254 TAACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CTAGGGGTGTGAGCACATGATGTACGAT
130 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* * *
4127318 GGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAACTCACACCC
195 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
** * * * * * *
4127383 TTTTAAGGAGCATTTGAGATTTTATAGGTTTGCTTCTAGTGGCCATTAAAGTGTCTCAAATGGGG
260 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
4127448 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCA
325 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * * * * *
4127513 TGCCAAGAAAAATAGAAGGATCATGTCTACCAGGTTTGGGACCAAAACCCCTTTCAAAAAAATTT
390 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * *
4127578 TAAAAAATCCTGAACCGAAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
455 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
4127643 TCAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATATAAAATGGCATTG
520 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA-AAAATGGCATTG
*
4127708 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCAT
584 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
4127773 CCTGTCTCTCTGGCCGACGTAGTGCCCGACCG-CC-CGCT-CGCTCGTTTCGTCGGTTGGCTTAG
649 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCCCTCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * * *
4127835 GCATAC-GAAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTCGCAGCAGTAGGATTGGC
714 GCATACAG-AGTTCATTCACAGTCTAAGAT-TGACCGGACCGAGGGTTGTAGCAGCAGGATCGGC
* * * * * * *
4127899 AGCACGTAGAGGGGGACCCAAACGATCCTCGGCTTGAGCATCCCGCCCCTCTGGCCGACTGAGCG
777 AGCACGCAGAGAGGGACCCGATCGATCCCCGGCTTGCGCATCCC-CCCCTCTGGCCGGCTGAGCG
* *
4127964 CCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAG-----TT--CA-T-T------
841 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGATTCATTCCCAGTCTAAGCAA
* * * * * **
4128010 -C------CA-----AGTCTAAGATTAGACCGGACAGAGGTTTACAACAGCACATGCTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* **
4128063 GGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGTGCCATCGTCGGAGCATCACCGGAGAACC
66 AGCATGTGCTGGTGCCGCATTTTTCTTCG-CAGGGGCACCATCGTCGGAGCATCACCGGAGAACC
* * * * * * *
4128127 TGATCGATGGCATTGAGGTTCC-AGTGGTC-GGGGGGCCGGGGGGCTGTGCCCACATGATGTCCG
130 TGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGG-TGTGCGCACATGATGTGCG
** * * *
4128190 ATGGGTGCTGGTACTTATCCCTTATATTGACCCCCTATCCCTCATCAAACCTCAAGAAATCACAC
193 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
4128255 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
4128320 GGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
4128385 CATGCCAATAAAAATACAAGAATCATGTCTACCAAGTTTGGGGACAAAACTCCATT-CGAAAAAA
388 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAAAAA
* * *
4128449 TTTTAAAAAATCCCGAACCGCAAAATGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTG
452 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
4128514 CCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*** ** *
4128579 TGGCACATAGAAATATGAAGATGTGGTTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGT
582 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
4128644 ATCCCGTCTCTCTGGCCGGCGTGGTGCCCGCCCG-CC-CGCT-CGCTCGTTTCGTCGGTTGGCTT
647 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCCCTCCGCTCGTTTCGTCGGTTGGCTT
* * * ** * *
4128706 AGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGATGGAGGGTTGCAGCAGCAGGATTGG
712 AGGCATACAGAGTTCATTCACAGTCTAAGAT-TGACCGGACCGAGGGTTGTAGCAGCAGGATCGG
* * * * * ** **
4128771 CAGCACGTAAAGGGGGAACC-AGCCGATCCCCGGCTTATGCATCCCACCCCTCTCACCGGCTGAG
776 CAGCACGCAGAGAGGGACCCGA-TCGATCCCCGGCTTGCGCATCCC-CCCCTCTGGCCGGCTGAG
* * *
4128835 CACCTGCACGCTCGTTTCGTGGGTTGACTTACGCATAC--AGACTTCATTCCCAGTC-AAGCAA
839 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGA-TTCATTCCCAGTCTAAGCAA
* * * * * *
4128896 ACGGAGTTCATTCCCAGTCTAAGATCGGACCTGATCGAGGGTTGTGGCAGCCCATGTTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * * * * *
4128961 GGCATGTGTTGGTGCCGCATTTTT-TAAT-GCCGGGGCACCATCGTCGGGGCAATAATCGGAGAA
66 AGCATGTGCTGGTGCCGCATTTTTCT--TCGCAGGGGCACCATCGTCGGAGC-ATCACCGGAGAA
* * * * * *
4129024 CCTGACCGGCAGCA-TAGGGTT-CGACGATCAGGAGGGCGGGGGGTTGGTGTGCGCACATGAATG
128 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC-CGGGG--GGTGTGCGCACATG-ATG
* *
4129087 TGCGAT-GGTGCCTGGTACTTTGGGCCCTTACATT-GCCTCCTAT-CCTCATCAAACCTCGAGAA
189 TGCGATGGGTG-CTGGTAC-TT-GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
4129149 CTCACACCCCGTGGTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCCATTAAAGTG
251 CTCACACCCCCT--TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CCATTAAAGTG
* *
4129214 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAA
313 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
*
4129279 TTCTTTTGTGCATGCCA
378 TTTTTTTGTGCATGCCA
4129296 GTCTAAGCAT
Statistics
Matches: 5174, Mismatches: 510, Indels: 170
0.88 0.09 0.03
Matches are distributed among these distances:
871 2 0.00
872 8 0.00
873 391 0.08
874 359 0.07
875 2 0.00
877 2 0.00
878 2 0.00
879 2 0.00
880 1 0.00
884 1 0.00
887 1 0.00
891 1 0.00
892 1 0.00
893 4 0.00
895 2 0.00
897 516 0.10
898 626 0.12
899 559 0.11
900 1274 0.25
901 372 0.07
902 619 0.12
903 340 0.07
904 89 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
AGCATGTGCTGGTGCCGCATTTTTCTTCGCAGGGGCACCATCGTCGGAGCATCACCGGAGAACCT
GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCCCTCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACAGAGTTCATTCACAGTCTAAGATTGACCGGACCGAGGGTTGTAGCAGCAGGATCGGCAGCA
CGCAGAGAGGGACCCGATCGATCCCCGGCTTGCGCATCCCCCCCTCTGGCCGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGATTCATTCCCAGTCTAAGCAA
Found at i:4126225 original size:26 final size:26
Alignment explanation
Indices: 4126196--4126248 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4126186 GTTGACTTAG
4126196 GCATACGGAGATCATTCACAGTCTAA
1 GCATACGGAGATCATTCACAGTCTAA
* *
4126222 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCACAGTCTAA
4126248 G
1 G
4126249 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATTCACAGTCTAA
Found at i:4127125 original size:26 final size:26
Alignment explanation
Indices: 4127095--4127147 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
4127085 GTTGACTTAG
4127095 GCATACGGAGTTCATT-ACCAGTCTAA
1 GCATACGGAGTTCATTCA-CAGTCTAA
4127121 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
4127147 G
1 G
4127148 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:4129667 original size:404 final size:405
Alignment explanation
Indices: 4128884--4129699 Score: 1111
Period size: 410 Copynumber: 2.0 Consensus size: 405
4128874 GACTTCATTC
* * * * *
4128884 CCAGTCAAGCAAACGGAGTTCATTCCCAGTCTAAGATCGGACCTGATCGAGGGTTGTGGCAGCCC
1 CCAGTCAAGCAAACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTGGGGCAGCAC
* * * ** *
4128949 ATGTTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTTAATGCCGGGGCACCATCGTCGGGGCAAT
66 ATGCTGGGCTCGGGCAAGTGCTGGTGCCGCATTTTTTAAT-CCGGGGCACCATCACCGGAGCAAT
* * * *
4129014 AATCGGAGAACCTGACCGGCAGCATAGGGTTCGACGATCAGGAGGGCGGGGGGTTGGTGTGCGCA
130 AACCGGAGAACCTGACCGACAGCATAGGGTTCCACAATCAGGAGGGC-GGGGG-TGGTGTGCGCA
*
4129079 CATGAATGTGCGATGGTGCCTGGTACTTTGGGCCCTTACATTGCCTCCTATCCTCATCAAACCTC
193 CATGAATGTGCGATGGTGCCTGGTACTTTGGGCCCTTACATTGCCCCCTATCCTCATCAAACCTC
*
4129144 GAGAACTCACACCCCGTGGTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCCATTA
258 GAGAACTCACACCCCCT-GTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCCATTA
4129209 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAG
322 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAG
*
4129274 TTGAATTCTTTTGTGCATG
387 CTGAATTCTTTTGTGCATG
* * *
4129293 CCAGTCTAAGCATACGAAGTTCATTTCCAGTCTAAGAT-GGTACCGGA-CTAAGGGTTGGGGTAG
1 CCAGTC-AAGCAAACGAAGTTCATTCCCAGTCTAAGATCGG-ACCGGATC-AAGGGTTGGGGCAG
* *
4129356 CACATGCTGGGCTCGGGCAAGTGCTGGTGCTGCATTTTTCTTCAT-CGGGGCACCATCACCGGAG
63 CACATGCTGGGCTCGGGCAAGTGCTGGTGCCGCA-TTTT-TTAATCCGGGGCACCATCACCGGAG
* * *
4129420 C-ATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCAGCAATC-GAGAGGGTC-GGGG-GGTG
126 CAATAACCGGAGAACCTGACCGACAGCA-TAGGGTTCCA-CAATCAG-GAGGG-CGGGGGTGGTG
* *
4129481 TGCGGACATG-ATGTGCGATGGGTG-CTGGTAC-TT-GGCCCTTATATTGGCCCCCTATCCCTCA
187 TGCGCACATGAATGTGCGAT-GGTGCCTGGTACTTTGGGCCCTTACATT-GCCCCCTAT-CCTCA
*
4129542 TCAAACCTCGAGAACTCACACCCCCT-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTA
249 TCAAACCTCGAGAACTCACACCCCCTGTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
4129606 G-CCATTAAAGTGTCTGAAATGGGGACA-TGTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
314 GCCCATTAAAGTGTCTGAAATGGGGACACT-TTTTTCAAATGGTCACAAAATCTTGTACACTTTG
*
4129669 AGTTTTTAGCTGAATTGTTTTGTGCATG
378 AGTTTTTAGCTGAATTCTTTTGTGCATG
4129697 CCA
1 CCA
4129700 ACAAAAATAC
Statistics
Matches: 364, Mismatches: 30, Indels: 31
0.86 0.07 0.07
Matches are distributed among these distances:
403 1 0.00
404 89 0.24
405 49 0.13
406 10 0.03
407 46 0.13
408 17 0.05
409 31 0.09
410 103 0.28
411 13 0.04
412 5 0.01
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (405 bp):
CCAGTCAAGCAAACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTGGGGCAGCAC
ATGCTGGGCTCGGGCAAGTGCTGGTGCCGCATTTTTTAATCCGGGGCACCATCACCGGAGCAATA
ACCGGAGAACCTGACCGACAGCATAGGGTTCCACAATCAGGAGGGCGGGGGTGGTGTGCGCACAT
GAATGTGCGATGGTGCCTGGTACTTTGGGCCCTTACATTGCCCCCTATCCTCATCAAACCTCGAG
AACTCACACCCCCTGTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCCATTAAAGT
GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGA
ATTCTTTTGTGCATG
Found at i:4134730 original size:707 final size:709
Alignment explanation
Indices: 4132340--4135036 Score: 4038
Period size: 716 Copynumber: 3.8 Consensus size: 709
4132330 GCGGGGGTGT
* ** *
4132340 GTACTTGGCCCTTATATTGACCTTCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAG
1 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
4132405 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGTGGACACTTTT
66 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
4132470 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTAGCTGAATTTTTTTGTGCATGCCAAT
131 TTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAATTTTTTTGTGCATGCCAAT
* * *
4132535 AAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAGAAAATTTTAAAAAA
195 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
* * * *
4132600 TCTGGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAATAGGAGTCGTCTTGCCTTGAAACT
260 TCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
* * * *
4132665 TCATGTGAAGGCTTAAGGGACCATTGTGTGAATTTACATGCCATAAGAATGGCATTGGCATGCAG
325 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
4132730 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
390 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * *
4132795 TCTGGCCCACGTAGTGCCCGCCCGCCTACCCGTTCGTTTCGTAGGTTGGCTTAGGCTTACGGAGT
455 TCTGGCCCACGTAGTGCCCGCCCG-C--CCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGT
* *
4132860 TCATTCCCAGTCTAAGATCGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTG
517 TCATTCCCAGTCTAAGATCGATCGGACGGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
*
4132925 CTGGT-CTTGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGAAGCCTGACCTG
582 CTGGTGC-TGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGAA-CCTGACCGG
* * *
4132989 CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGAGTGCGAACATGATGTGCGATGGGTGCT
645 CGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT-GGTGCT
4133054 G
709 G
* * *
4133055 GTACTTGGCCCATATATTGTCCCCCTGTCCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
1 GTACTTGGCCCTTATATTGGCCCCCTAT-CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
4133120 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-ACATGCGGACACTTT
65 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
4133184 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAT
130 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAT
4133249 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
195 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
* * *
4133314 T-TTGAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCTTGAAAC
260 TCTTG-AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
* * * *
4133378 TGCACGTGAAGGCTTAAGGGACCATTGTGTGAATTGACATGCCATAAAAATGGCATTGGCATGCA
324 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
*
4133443 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGCTTGCGCATCCCGTCT
389 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
4133508 CTCTGGCCCACGTAGTGCCCGCCCGTCCGCTCGCTCGTTT-GTTTCGTCAGTTGGCTTAGGCATA
454 CTCTGGCCCACGTAGTGCCCGCCCG-CC-C-CGCTCGTTTCG--TCG--A-TTGGCTTAGGCATA
4133572 CGGAGTTCATTCCCAGTCTAAGATCGA-CTGGA-GCGAGGGTTGCGGCAGCACATGCTGGGCTCG
511 CGGAGTTCATTCCCAGTCTAAGATCGATC-GGACG-GAGGGTTGCGGCAGCACATGCTGGGCTCG
*
4133635 GGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATTGCCAGAGCATCGCCGGAGAACCT
574 GGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCT
* * * *
4133700 GACTGGTGGCATTGGGG-TTCTGTCGATCGGGGGGGCCGGCGGGTGTGCGCACATGATGTGCGAT
639 GACCGGCGGCATTGGGGTTTC-GGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
4133764 GCGTGCTG
703 G-GTGCTG
* *
4133772 GTACTTGGCCCTTATATTGGCCTCCTATACCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
1 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * * **
4133837 AGCATTTGAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTTTGATTTGGGGACACTTTT
66 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
4133902 TTCAAATGGTCACAAAATGTTGTACACTTTGAGTTTTTAACTG-ATTTTTTTGTGCATGCCAACA
131 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATA
* ** * * *
4133966 AAAATACGAGGATCATATCTACCAAGTTTTGGGCCAAAACACCTTTCAAAAAAATTTTAAAAAAT
196 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
** * * * *
4134031 CCCGAACTGTAAAAAGTTTCGAAAATCATGAAAAATATAAAATGACTCGTCTTGCCATGAAACTT
261 CTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
* *
4134096 CACATGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
326 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
*
4134161 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCT
391 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
** * *
4134226 CTGGCCGGCATAGTGCCCGCCCG-CCCGCTCGTTTCGTCGATTGGCTTAGGCATATGGAGTTCAT
456 CTGGCCCACGTAGTGCCCGCCCGCCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCAT
* * *
4134290 TCCCAATCTAAGATCAGATTGGACGGAGGGTTGCGGCAGCACATGCTGGGCTCGGACATGTGCTG
521 TCCCAGTCTAAGATC-GATCGGACGGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * * * *
4134355 GTGCCGTATTTTTCTTC-ACTGGGGCGCCATCGTCGGAGCATTGCCGGAGAACCTGACCGGCGGC
585 GTGCTGCATTTTTCTTCGTC-GGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCGGCGGC
4134419 ATTGGGGTTTCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGTGCTG
649 ATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGTGCTG
* * *
4134479 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCGCACCCCTTTAAAG
1 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
4134544 AGCATTTGAAATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
66 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
4134609 TTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAAAA
131 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATA
* * **
4134673 AAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAAAATTTTAAAAAAT
196 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
** * *
4134738 CTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
261 CTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
* * *
4134803 CATGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCAT-AAAATGTCATTGGCATGCAGA
326 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* * *
4134867 AATATAAAGATGTGCCTAAACCCACCTATCACTCTATCGATCCACGGCTTGCGCATCCCGTCTCT
391 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * *
4134932 CTGGCCGACGTAGTGCCCGCCCG-CCCACTCGTTTCGTCGGTTGGCTTAGGTATACGGGGTTCAT
456 CTGGCCCACGTAGTGCCCGCCCGCCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCAT
* *
4134996 TCCCAGTCTAAGATTGGATCGGATC-GAGGGTTGCGGTAGCA
521 TCCCAGTCTAAGA-TCGATCGGA-CGGAGGGTTGCGGCAGCA
4135037 GGATCGACAG
Statistics
Matches: 1806, Mismatches: 151, Indels: 59
0.90 0.07 0.03
Matches are distributed among these distances:
706 171 0.09
707 334 0.18
708 74 0.04
709 110 0.06
710 4 0.00
711 3 0.00
712 10 0.01
713 6 0.00
714 308 0.17
715 72 0.04
716 442 0.24
717 141 0.08
718 130 0.07
719 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (709 bp):
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
CTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCCACGTAGTGCCCGCCCGCCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCGATCGGACGGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
TGCTGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCGGCGGCAT
TGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGTGCTG
Found at i:4135251 original size:159 final size:159
Alignment explanation
Indices: 4134959--4135251 Score: 347
Period size: 159 Copynumber: 1.8 Consensus size: 159
4134949 CGCCCGCCCA
* * * *** *
4134959 CTCGTTTCGTCGGTTGGCTTAGGTATACGGGGTTCATTCCCAGTCTAAGATTGGATCGGATCGAG
1 CTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGACCGAG
*** * *
4135024 GGTTGCGGTAGCAGGATCGACAGCACGCAAAGGGGGACCTGGTCGATCCCCGACTCGCGCATCTC
66 GGTTGCGGTAGCAGGATCGACAGCACGCAAAGGGGGACCCCATCGAACCCCGACTCGCGCATCCC
4135089 ACCCATCTGGCAAGCTGAGATCCAGCACC
131 ACCCATCTGGCAAGCTGAGATCCAGCACC
*
4135118 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAA-CTGGACCGA
1 CTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAATC-GGACCGA
* * * ** * * * * *
4135182 GGGTTGCGGTTGTAGTA-CAGGTAGCACGCAGAGGGGGACCCCATCGAACCTCGGCTTGCGTATC
65 GGGTTGCGGTAGCAGGATC-GACAGCACGCAAAGGGGGACCCCATCGAACCCCGACTCGCGCATC
4135246 CCACCC
129 CCACCC
4135252 CTCTAGTCGG
Statistics
Matches: 109, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
158 2 0.02
159 107 0.98
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
CTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGACCGAG
GGTTGCGGTAGCAGGATCGACAGCACGCAAAGGGGGACCCCATCGAACCCCGACTCGCGCATCCC
ACCCATCTGGCAAGCTGAGATCCAGCACC
Found at i:4135330 original size:26 final size:26
Alignment explanation
Indices: 4135299--4135351 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4135289 GTTGACTTAG
4135299 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
4135325 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
4135351 G
1 G
4135352 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:4136254 original size:26 final size:26
Alignment explanation
Indices: 4136204--4136256 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4136194 GTTGACTTAG
**
4136204 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
4136230 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
4136256 G
1 G
4136257 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:4137146 original size:25 final size:26
Alignment explanation
Indices: 4137112--4137161 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
4137102 TTGACTTAGG
4137112 CATACGGAGTTCATT-CCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
*
4137137 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
4137162 GATCGGATTG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:4137784 original size:901 final size:901
Alignment explanation
Indices: 4135118--4138057 Score: 3999
Period size: 907 Copynumber: 3.3 Consensus size: 901
4135108 ATCCAGCACC
* * * * *
4135118 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAG
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAG
* * * * * * * * *
4135183 GGTTGCGGTTGTAGTACAGGTAGCACGCAGAGGGGGACCCCATCGAACCTCGGCTTGCGTATCCC
66 GGTTGCGG-TGCAGGACTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* * * * * * * *
4135248 ACCCCTCTAGTCGGTTGAACGCCCACAGGATTGTTTCATTGGTTGACTTAGGCATACAGAGTTCA
130 ACCCCTCTAGCCGGTTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * *
4135313 TTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TCGAGGGTTGCGAT
195 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCAAC
* * **
4135377 AGCACATGCTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCAAA
259 AGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGA
* * * *
4135442 GTATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGC
324 GCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAAGGGGTGTGC
*
4135507 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTAATCAAACC
389 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACC
* ** *
4135572 TCGAGAACTCACACCCCCTTAAAGAGCCTTCGAGATTTTACAGGTTCACTGCCAGTAGCCATTAA
454 TCGAGAACTCACACCCCCTTAAAGAGCCTTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAA
* *
4135637 AGTGTCTGAAAAGGGGACACTTTTTCCAAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAG
519 AGTGTCTGAAATGGGGACACTTTTTCC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* *
4135702 CTGAATGTTATTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
583 CTAAAT-TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * *
4135767 TCCTTCCGAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATGGA
647 CCCTTTCG-AAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
* * *
4135832 GAACGAGTTGTCTTGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAG
711 AAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*
4135897 CCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
776 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * * ** *
4135962 ATCCACGGGTTGCGCATCCCGTCTCTCTGG-CCGACGTAGAGCCTGCTTGCCCGTCCGCCCG
841 ATCCACGGCTTGCGCATCCCGCCTCTCTGGCCCG-TGTAGTGCCCGCCCGCCCGCCCGCCCG
* * ** *
4136023 CTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAG
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAG
* ** * * **
4136088 GGTTGCGACTGCAGGA-TCGGCAATACGCAGAGGGGGACACGACCGATCCCTGGCTTGCATATCC
66 GGTTGCG-GTGCAGGACT-GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC
* *
4136152 CACCCCTCTAGCCGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
129 CACCCCTCTAGCCGGTTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * ** * *
4136217 ATTCCCGGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGTAGC
194 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAAC
* * * *
4136282 AGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCAACGCCGGA
259 AGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGA
* * **
4136347 GCATCACCGGAGATCCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGTGGGGT
324 GCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC----AAGGGGT
* * *
4136412 GTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATGA
385 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCA
*
4136477 AACCTCGAGAACTCCCACCCCCTTAAAGAGCCTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCT
450 AACCTCGAGAACTCACACCCCCTTAAAGAGCCTTTGAGATTTTACAGGTTTGCTGCCAGTAG-CT
* * * *
4136542 -GTAAAGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTATAGACATCGAGTTT
514 ATTAAAGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * * * *
4136606 TTAGCTGAATTTTTTTATGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCAA
579 TTAGCT-AAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
** *
4136671 AAACGTCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
643 AAACCCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
* * *
4136736 A-AAAAGCGGGTCGTCTTGCCATAAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTA
708 AGAAAA-CGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
4136800 CAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
772 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * ***
4136865 ATCGATCCACGACTTGCGCATCCCGCCTCTCTGGCCCGTGTAGTGCCCACCCGTTTGCCCGCCCG
837 ATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCCGTGTAGTGCCCGCCCGCCCGCCCGCCCG
* *
4136930 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAG
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAG
* * * * * * *
4136995 GGGTGCGGTAGCAGGATTGGCAGCATGCAGAGGGGGACTCGATCGATCCCCGGCTTACGCATCCT
66 GGTTGCGGT-GCAGGACTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* **
4137060 GCCCCTCTAGCCGCCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
130 ACCCCTCTAGCCGGTTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * ** *
4137125 TT-CCAGTCTAAACATATGGAGTTCATTCCCAGTCTAAGATCGGATTGGACTGGGGGTTGCAACA
195 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAACA
* * *
4137189 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGTACCATCGTCGGAG
260 GCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAG
* * *
4137254 CATCACCGGAGAA-CTCGACTGGCGGCATTGGGGTTTCGGCGATCGGGGGGGCCAAGGGGTGTGC
325 CATCACCGGAGAACCT-GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAAGGGGTGTGC
* * * *
4137318 GCACATGATGTGCGGTGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACC
389 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACC
* * * * *
4137383 TTGGGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGAAGCTATTAA
454 TCGAGAACTCACACCCCCTTAAAGAGCCTTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAA
* * * *
4137448 AGTGTCTGAAATGGAGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAAC
519 AGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
4137512 TAAAATTTTTTGTGCATGCCAAAAAAAATACAACGATCAGGTCTACCAAGTTTGGGGCCAAAACC
584 T-AAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACC
** * **
4137577 CCTTTCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAA
648 CCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
*
4137642 ATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
713 ACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
4137707 ATAAAAATGGCATTGGCATGCAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGAT
778 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
*
4137772 TCACGGCTTGCGCATCCCGCCTCTCTGGCCCGTGTAGTGCCCGCCCGCCCGCCCGCCCG
843 CCACGGCTTGCGCATCCCGCCTCTCTGGCCCGTGTAGTGCCCGCCCGCCCGCCCGCCCG
* *
4137831 CTCTTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-G---AA-
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAG
* * * * * * **
4137891 --CTGACGGT---TGACTGGCAGCATGTAGAGGGGGACCCGACCGATCCCCGACATGCGCATCTT
66 GGTTG-CGGTGCAGGACTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* * * * *
4137951 GCCCTTTTGGCCGGTTGAGCGCCCACACGCTCGTTTCGTGGGTTGATTTAGGCATACGGAGTTCA
130 ACCCCTCTAGCCGGTTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
*
4138016 TTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
195 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
4138058 GAACCAGATC
Statistics
Matches: 1790, Mismatches: 227, Indels: 49
0.87 0.11 0.02
Matches are distributed among these distances:
891 104 0.06
892 38 0.02
894 2 0.00
895 4 0.00
897 2 0.00
900 1 0.00
901 346 0.19
902 178 0.10
905 323 0.18
906 156 0.09
907 384 0.21
908 96 0.05
909 155 0.09
910 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (901 bp):
CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAG
GGTTGCGGTGCAGGACTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCA
CCCCTCTAGCCGGTTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAACAG
CACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGC
ATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAAGGGGTGTGCGC
ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCCTTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAG
TGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTA
AATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCT
TTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
AGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
CGGCTTGCGCATCCCGCCTCTCTGGCCCGTGTAGTGCCCGCCCGCCCGCCCGCCCG
Found at i:4138038 original size:26 final size:26
Alignment explanation
Indices: 4138002--4138054 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4137992 GTTGATTTAG
4138002 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
4138028 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4138054 G
1 G
4138055 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4138164 original size:174 final size:174
Alignment explanation
Indices: 4137914--4138232 Score: 476
Period size: 174 Copynumber: 1.8 Consensus size: 174
4137904 GGCAGCATGT
* * ** * * *
4137914 AGAGGGGGACCCGACCGATCCCCGACATGCGCATCTTGCCCTTTTGGCCGGTTGAGCGCCCACAC
1 AGAGGAGGACCCGACCGATCCCCGACATACGCATCCCGCCCCTCTGGCCGGTTGAGCACCCACAC
* * * * *
4137979 GCTCGTTTCGTGGGTTGATTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT
66 ACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
*
4138044 CCCAGTCTAAGATCGAACCAGATCGAGCATGATCAACAGCACAC
131 CCCAATCTAAGATCGAACCAGATCGAGCATGATCAACAGCACAC
* * * * *
4138088 AGAGGAGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCTGTTTGAGCACCCGCAC
1 AGAGGAGGACCCGACCGATCCCCGACATACGCATCCCGCCCCTCTGGCCGGTTGAGCACCCACAC
4138153 ACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
66 ACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
4138218 CCCAATCTAAGATCG
131 CCCAATCTAAGATCG
4138233 GACCGAACCA
Statistics
Matches: 127, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
174 127 1.00
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.23
Consensus pattern (174 bp):
AGAGGAGGACCCGACCGATCCCCGACATACGCATCCCGCCCCTCTGGCCGGTTGAGCACCCACAC
ACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
CCCAATCTAAGATCGAACCAGATCGAGCATGATCAACAGCACAC
Found at i:4138212 original size:26 final size:26
Alignment explanation
Indices: 4138176--4138228 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4138166 GTTGACTTAG
*
4138176 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
4138202 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
4138228 G
1 G
4138229 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:4139117 original size:26 final size:26
Alignment explanation
Indices: 4139078--4139130 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4139068 GTTGACTTAG
4139078 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
*
4139104 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
4139130 G
1 G
4139131 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:4140897 original size:25 final size:25
Alignment explanation
Indices: 4140863--4140910 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
4140853 GTTGACTTAG
4140863 GCATACGGAGTTCATTCATAGTCAT
1 GCATACGGAGTTCATTCATAGTCAT
*
4140888 GCATACGGAGTTCATTCCTAGTC
1 GCATACGGAGTTCATTCATAGTC
4140911 TAAGATCAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCATAGTCAT
Found at i:4141066 original size:26 final size:26
Alignment explanation
Indices: 4141036--4141088 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4141026 GTTGACTTAG
*
4141036 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4141062 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4141088 G
1 G
4141089 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4141963 original size:26 final size:26
Alignment explanation
Indices: 4141934--4141986 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
4141924 GTTGACTTAG
* * *
4141934 GCATGCGAAGTTTATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
4141960 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
4141986 G
1 G
4141987 ATCGGACCAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:4143855 original size:26 final size:26
Alignment explanation
Indices: 4143819--4143871 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4143809 GTAAACTTAG
4143819 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
4143845 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4143871 G
1 G
4143872 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4145083 original size:887 final size:895
Alignment explanation
Indices: 4143351--4145168 Score: 2328
Period size: 887 Copynumber: 2.0 Consensus size: 895
4143341 CAATCTAAGC
* * * *
4143351 ATACAAGGATCACGTTTACCAAGTTTGGGGCCAAAATTCCTTCCGAAAAGATTTTAAAAAATCTC
1 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCTC
* *
4143416 GAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAATGAGTCATCTTGCCATGAAACTTCAC
66 GAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCATCTTGCCATAAAACTTCAC
*
4143481 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
131 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
* *
4143546 ATGAAGATGTCCCTAAACCCACCTACGACCCATCGATACACGGCTTGCGCATCCCGTCTCTTTGG
196 ATGAAGATGTCCCTAAACCCACCTACCACCCATCGATACACGGCTTGCGCATCCCGTCTCTCTGG
* * *
4143611 CCGGCGTAGTGGCCGTCCGCCTGCCCTCTCATTTCGTCGGTTGCCTTAGGCATACGGAGTTAATT
261 CCGGCGAAGTCGCCG-CCGCCT-CCCACTCATTTCG-CGGTTGCCTTAGGCATACGGAGTTAATT
* * * * *
4143676 ACCAGTCTAAGATTAGACCGAACTAAAGGTTGCGGTAGCAGGATCGGCAGCATGTAGAGGGGCAC
323 A-CAGTCTAAGATTAGACAGAACTAAAGGTTGCAGTAGCAGGATCAGCAGCACGCAGAGGGGCAC
* * * * * *
4143741 TCGACCGATCCTCGACTTGCGCATCCTGCCCCGCTGGCCGACTGAGCACCCGCACGCTCATTTCG
387 CCGACCGATCCCCGACTTACGCATCCCGCCCCGCTGGCCGACTGAGCACACGCACGCTCATTTCA
*
4143806 TGGGTAAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
452 TGGGTAAACTTAGGCACACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* *
4143871 GATCGGATCGGACCGAGTGTTACGACAGCACATGCTAGGCTCGAGCATGAGTTGGTGCAGCATTT
517 GATCGGATCGGACCGAGGGTTACGACAGAACATGCTAGGCTCGAGCATGAGTTGGTGCAGCATTT
*** * * *
4143936 TTCTTCATTGGGGTACCATCATCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCA
582 TTCTTCACCAGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCAACGGCATTGGGGTTCCA
* * * *
4144001 ACGATCGGGGGGTCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
647 ACGATCAGGGGGTCC-AGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTCGGCACTT
* *
4144066 ATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCATTAAAGAGTCTTTGAGATT
711 ACATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCATTAAAGAGTCTTTGAGATT
**
4144131 TTACAGGTTTGCTGTTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
776 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
4144196 AAAGTCTTGTTCACTTCGAGTTTTTGGCTGAATTGTTTTGTGCATGCCAAAAAAA
841 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAA
*
4144251 ATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCTC
1 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCTC
* * * **
4144316 GAATCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCTT
66 GAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCATCTTGCCATAAAACTTCAC
*
4144381 GTGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCTATTGGCACGCAG-AA
131 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC-ATTGGCACGCAGAAA
** *
4144445 TATGAAGAGTGT-GGT-AACCCACCTACCACCCTATC-ATCCAC-GCTTGCGCATCCCGTCTCTC
195 TATGAAGA-TGTCCCTAAACCCACCTACCACCC-ATCGATACACGGCTTGCGCATCCCGTCTCTC
* * * *
4144506 TGG-TGGCGAAG-CGCC-CC-CCT-CCAC-CGTTGTCG-GGTTGGCTTAGGCATACGGAGTTCAT
258 TGGCCGGCGAAGTCGCCGCCGCCTCCCACTCATT-TCGCGGTTGCCTTAGGCATACGGAGTTAAT
* * * * * *
4144564 CT-CAGTCTAAGA-TCGCATCAG-ACTGAGGGTTGTAGTAGCAGGATTAGTAGCACGCAGAGGGG
322 -TACAGTCTAAGATTAG-A-CAGAACTAAAGGTTGCAGTAGCAGGATCAGCAGCACGCAGAGGGG
* * * * * *
4144626 GACCC-AGCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCTGGCTGAGC-CAC-CACGCTCGT
384 CACCCGA-CCGATCCCCGACTTACGCATCCCGCCCCGCTGGCCGACTGAGCACACGCACGCTCAT
* *
4144688 TTCATGGGT-GACTTCGGCACAC-GAGTTCATTTCCCAG-CTAAGC-TACGGTGAGTTCATT-CC
448 TTCATGGGTAAACTTAGGCACACAGAGTTCA-TTCCCAGTCTAAGCATAC-G-GAGTTCATTCCC
* * * * * *
4144748 AGTGTAAGATCGGATCGGACCGAGGGTTGCGGTACA-AACATGCTGGGCTCGGGCAATGTGTTGT
510 AGTCTAAGATCGGATCGGACCGAGGGTTAC-G-ACAGAACATGCTAGGCTCGAGC-ATGAGTTGG
* * *
4144812 TGCCA-CATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCG-CTGGAGAACCTGGACACAAGT
572 TG-CAGCATTTTTCTTCACCAGGGCACCATCACCGGAGCATCGTC-GGAGAACCT-GAC-CAA-C
* *
4144875 GGCATTGGGGCTT-CGACGCATCAGGGGG-CC-GGGGGGTGTGCGCACATGATGTGTGATGGGTG
632 GGCATTGGGG-TTCCAACG-ATCAGGGGGTCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
4144937 CTAGTACTCGGCACTTACATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
695 CTAGTACTCGGCACTTACATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCATTA
*
4145002 AAGAG-CATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
760 AAGAGTC-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * **
4145066 TTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGGT
824 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCC
*
4145131 AACAAAA
889 AAAAAAA
* * * * *
4145138 ATATAGGGATCACATGTACCAAGTTTTGGGC
1 ATACAAGGATCACGTCTACCAAGTTTGGGGC
4145169 TCGGGCATGA
Statistics
Matches: 800, Mismatches: 96, Indels: 57
0.84 0.10 0.06
Matches are distributed among these distances:
883 3 0.00
884 43 0.05
885 43 0.05
886 68 0.09
887 247 0.31
888 84 0.10
889 42 0.05
890 14 0.02
891 6 0.01
893 3 0.00
894 2 0.00
896 3 0.00
897 6 0.01
898 22 0.03
899 20 0.03
900 180 0.22
901 14 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCTC
GAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCATCTTGCCATAAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
ATGAAGATGTCCCTAAACCCACCTACCACCCATCGATACACGGCTTGCGCATCCCGTCTCTCTGG
CCGGCGAAGTCGCCGCCGCCTCCCACTCATTTCGCGGTTGCCTTAGGCATACGGAGTTAATTACA
GTCTAAGATTAGACAGAACTAAAGGTTGCAGTAGCAGGATCAGCAGCACGCAGAGGGGCACCCGA
CCGATCCCCGACTTACGCATCCCGCCCCGCTGGCCGACTGAGCACACGCACGCTCATTTCATGGG
TAAACTTAGGCACACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
GGATCGGACCGAGGGTTACGACAGAACATGCTAGGCTCGAGCATGAGTTGGTGCAGCATTTTTCT
TCACCAGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCAACGGCATTGGGGTTCCAACGA
TCAGGGGGTCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTCGGCACTTACATT
GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCATTAAAGAGTCTTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAA
Found at i:4146864 original size:26 final size:26
Alignment explanation
Indices: 4146821--4146873 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4146811 GTTGACTTTG
* * *
4146821 GCATATGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
4146847 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
4146873 G
1 G
4146874 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:4147769 original size:26 final size:27
Alignment explanation
Indices: 4147718--4147771 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
4147708 GTTAACTGAG
4147718 GCATACAGAGTTCATTTCCCAGTCTAA
1 GCATACAGAGTTCATTTCCCAGTCTAA
4147745 GCATACAGAGTTCA-TTCCCAGTCTAA
1 GCATACAGAGTTCATTTCCCAGTCTAA
4147771 G
1 G
4147772 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 13 0.48
27 14 0.52
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (27 bp):
GCATACAGAGTTCATTTCCCAGTCTAA
Found at i:4150492 original size:876 final size:860
Alignment explanation
Indices: 4147955--4150634 Score: 3414
Period size: 876 Copynumber: 3.1 Consensus size: 860
4147945 GGCCCTTATA
* **
4147955 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTGGAAAAT
1 TTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAAT
4148019 CATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
65 CATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
4148084 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
130 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * *
4148149 TACCACCATATCGATCCACGGTTTGCGCATCCCGTCTCTCTGGCCAGCGTAATGCC-T--G--CC
195 TACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGTCCGCCCC
* * *
4148209 CGCCTGCTCGTTTCGTCGGTTGGCTTAGACATACGGAATTCATTCCCAGTCTAAGATAAGACCAG
260 CGCCTGCTCTTTTCGTCGGTTGGCTTAG-CATACGGAGTTAATTCCCAGTCTAAGAT-AGACCAG
* * * * * *
4148274 ATCGAGGGTTGCAGCAACAGGATC-AGCAGCACGCAGAGGGGGACCCTATC-AATCCCCGACTTA
323 ATCGAGGGTTGCGGTAGCAGGATCGA-CAGCACGCAGAGGGGGA-CC-AGCTGATCCCCGACTTG
* * * *
4148337 TGCATCCCGCCCCTTTGGCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
385 CGCATCCCGCCCCTCTGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
* * * * *** * **
4148402 GAGTTCATTCCCAGTCTAAGATTGGACCGGATTGAGGGTTGCGACAAAACATGCTGGGCTAGGGC
450 GAGTTCATTCCCAGTCTAACATCGAATCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTAGGGC
4148467 ATGTGCTGGTG-TCGCATTTTTCTTCACTGGGGCACCATCG--T---CGGAGAACCTGACCGGCA
515 ATGTGCTGGTGCT-GCATTTTTCTTCACTGGGGCACCATCGCATCGCCGGAGAACCTGACCGGCA
*
4148526 GCATTGGGGTTTCGACGATCGGGGGGGCTGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
579 GCATTGGGGTTTCGACGATC-GGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
4148591 ACTTGGCCCTTATATTGGCCCCTTTTACCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
643 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
4148656 CATTTGAGATTTTACAAGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
708 CATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
4148721 CAAATGGTCACAAAATCTTGTACACTTCATGTTTCTAGCTGAATTTTTTTGTGCATGCCAACAAA
773 AAAATGGTCACAAAATCTTGTACACTTTA-GTTT-TAGCTGAATTTTTTTGTGCATGCCAACAAA
4148786 AATACAAGGATCACGTCTACCAAGT
836 AATACAAGGATCACGTCTACCAAGT
** * *
4148811 TTGGGGTAAAAAATCCTTT-CGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAAT
1 TTGGGGCCAAAACT-CTTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAAT
* **
4148875 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAATATTGT
65 CATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
4148940 ATGAATTTACAAGCCATAAAAATGCCATTGGCATGCAGAAATATGAAGATATGCATAAACCCACC
130 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * *
4149005 TACCACCCTATCGATCCATGCCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
195 TACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGTCCG-CC
*
4149070 GCCCGCCCGTCCGCTCTTTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATT
258 -CCCG-CC-T--GCTCTTTTCGTCGGTTGGCTTA-GCATACGGAGTTAATTCCCAGTCTAAGA-T
* * * * * * *
4149135 GGACCGGACCGAGGGTTGCGATAGCAGGATCGACAGCACGCGGAGGGGGACCCGGTCGATCCCC-
316 AGACCAGATCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCAGCT-GATCCCCG
***
4149199 AGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCTAAACGCTCGTTTCATGGGTTGACTTA-
380 A-CTTGCGCATCCCGCCCCTCT-GCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
* *
4149263 TCTATATGGAGTTCATTCCCAGTCTAAGCAAACGGAGTTCATTCCCAGTCTCAGATCGGACCGAA
443 GC-ATACGGAGTTCATTCCCAGTCT------A---A---CA-T--C-G----A-ATCGGACC--A
* * * *
4149328 CTGAGGGTTGCGGCAGCACATGCTGGACTGGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGG
484 ---AGGGTTGCGGCAGCACATGCTGGGCTAGGGCATGTGCTGGTGCTGCATTTTTCTTCACTGGG
* ** * * *
4149393 G---CA-C-CATCGCCGGAGAACCTGATCGGCATTATTGGGGTTCCGGCGATCGGGGGAGCCGAG
546 GCACCATCGCATCGCCGGAGAACCTGACCGGCAGCATTGGGGTTTCGACGATCGGGGG-G-CGGG
*
4149453 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTC
609 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * * *
4149518 ATCAAACCTCAAGAACTCACACCCCCTTAATGAGTAATTGAGATTTTACAAGTTTGCTGCTAGTA
674 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTA
*
4149583 GCCATTAAGGTGTCTGAAATGGGGACACTTTTTTAAAATGGTCACAAAATCTTGTACACTTTGAG
739 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTAAAATGGTCACAAAATCTTGTACACTTT-AG
* *
4149648 TTCTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCATGT
803 TT-TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* *
4149707 TTGGGGCCAAAACTCTTTCCGAAAAAA-TTTAAAAATTCCTGAACCGCAAAAAGTTTCAAAAATC
1 TTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATC
* *
4149771 ATGAAAAATAGAAAACGGGTCATCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
66 ATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * * * * *
4149836 TGAATTTACAAACCCTAAAAATGGCATTGGCATACAAAAATATAAAGATGTGCCTAAACTCACCT
131 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
4149901 ACCACCTTATCGATCCACGGCTTACGCATCCCATCTCTCTGGCCGGTGTAGTGCTCGTCCGCCCA
196 ACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC-CGTCCGCCC-
* *
4149966 TCCGCCTGCTCTTTTCATCGGTTGGCTTATGCATACGGAGTTAATTTCCAGTCTAAGAGTAGACC
259 -CCGCCTGCTCTTTTCGTCGGTTGGCTTA-GCATACGGAGTTAATTCCCAGTCTAAGA-TAGACC
* *
4150031 AGATCGAGGGTTACGGTAGCAAGATCGACAGCACGCAGAGGGGGACCAAGCTGATCCCCGACTTG
321 AGATCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACC-AGCTGATCCCCGACTTG
* * * * *
4150096 CGGATCTCGCCCCTCTGCCCGACTAAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
385 CGCATCCCGCCCCTCTG-CCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
* *
4150161 GGAGTTTATTCCCAGTCTAACATCGAATCGGACCAAGGGTTGTGGCAGCACATGCTGGGCTCAGG
449 GGAGTTCATTCCCAGTCTAACATCGAATCGGACCAAGGGTTGCGGCAGCACATGCTGGGCT-AGG
*
4150226 G-ATGTGCTGGTGCTGTATTTTTCTTCACTGGGGCACCATTGCCGGAGCATCGCCGGAGAACCTG
513 GCATGTGCTGGTGCTGCATTTTTCTTCACTGGGGCACCA-T--C---GCATCGCCGGAGAACCTG
* * * *
4150290 ACCGACAGCATCGGGTTTTCGACGATCGGTGTGGCGGGGGGGTGTGCGCACATGATGTGCGATGG
572 ACCGGCAGCATTGGGGTTTCGACGATCGG-GGGGC-GGGGGGTGTGCGCACATGATGTGCGATGG
* *
4150355 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCA
635 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
4150420 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGAC
700 TTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
4150485 ACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTGTTTTGTGCATG
765 ACTTTTTTAAAATGGTCACAAAATCTTGTACACTT-TAG-TTTTAGCTGAATTTTTTTGTGCATG
4150550 CCAACAAAAATACAAGGATCACGTCTACCAAGT
828 CCAACAAAAATACAAGGATCACGTCTACCAAGT
4150583 TTGGGGCCAAAACATC-TTCCGAAAAAATTTTAAAAAAT-CTCGAACCGTAAAA
1 TTGGGGCCAAAAC-TCTTTCCGAAAAAATTTTAAAAAATCCT-GAACCGTAAAA
4150635 TGGTTTGACT
Statistics
Matches: 1568, Mismatches: 171, Indels: 149
0.83 0.09 0.08
Matches are distributed among these distances:
856 220 0.14
857 6 0.00
860 1 0.00
864 4 0.00
865 55 0.04
866 4 0.00
867 3 0.00
868 113 0.07
869 60 0.04
870 8 0.01
871 1 0.00
872 1 0.00
875 3 0.00
876 302 0.19
877 26 0.02
878 2 0.00
879 2 0.00
881 1 0.00
882 2 0.00
885 2 0.00
890 6 0.00
891 173 0.11
892 7 0.00
893 2 0.00
894 10 0.01
895 297 0.19
896 255 0.16
897 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (860 bp):
TTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATC
ATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
ACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGTCCGCCCCC
GCCTGCTCTTTTCGTCGGTTGGCTTAGCATACGGAGTTAATTCCCAGTCTAAGATAGACCAGATC
GAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCAGCTGATCCCCGACTTGCGCATC
CCGCCCCTCTGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAACATCGAATCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTAGGGCATGTGC
TGGTGCTGCATTTTTCTTCACTGGGGCACCATCGCATCGCCGGAGAACCTGACCGGCAGCATTGG
GGTTTCGACGATCGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
ATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTAAAATGGT
CACAAAATCTTGTACACTTTAGTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
TCACGTCTACCAAGT
Found at i:4151135 original size:517 final size:518
Alignment explanation
Indices: 4150155--4151142 Score: 1529
Period size: 517 Copynumber: 1.9 Consensus size: 518
4150145 GTTGACTTAG
* ** *
4150155 GCATACGGAGTTTATTCCCAGTCTAACATCGAATCGGACCAAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAACATCGAATCGGACCAAGGGTTACGGCAGCACATGCTGGA
* * * **
4150220 CTCAGGGATGTGCTGGTGCTGTATTTTTCTTCACTGGGGCACCATTGCCGGAGCATCGCCGGAGA
66 CTCAGGGATGTGCTCGTGCCGCATTTTTCTTCACTGGGGCACCATCACCGGAGCATCGCCGGAGA
* * * * *
4150285 ACCTGACCGACAGCATCGGGTTTTCGACGATCGGTGTGGCGGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACAGCATCGGGGTTCCGACGATCGGTGGGGCCGGGGGGTGTGCGCACATAATGTGC
*
4150350 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAACTCACA
* *
4150415 CCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATG
261 CCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATG
* * * *
4150480 GGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTGTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCAGAATTGTTTTGT
* *
4150545 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACATCTTCCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACATCATCCGAAAAAA
*
4150610 TTTTAAAAAATCTCGAACCGTAAAATGGTTTGACTTAGGCATATGAAGTTCATTCAAATCTAA
456 TATTAAAAAATCTCGAACCGTAAAATGGTTTGACTTAGGCATATGAAGTTCATTCAAATCTAA
* * ** *
4150673 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACTGAGGGTTACGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAACATCGAATC-GGACCAAGGGTTACGGCAGCACATGCTGG
* * *
4150737 ACTC-GGGCATGTGTTCGTGCCGCATTTTTCTTC-GTCGGGGCACTATCACCGGAGCATCGCCGG
65 ACTCAGGG-ATGTGCTCGTGCCGCATTTTTCTTCACT-GGGGCACCATCACCGGAGCATCGCCGG
* * ** *
4150800 AGAACCTGACGGACAGCATTGGGGTTCCGGTGATCGG-GGGGCCGGGGGGTGTTCGCACATAATG
128 AGAACCTGACCGACAGCATCGGGGTTCCGACGATCGGTGGGGCCGGGGGGTGTGCGCACATAATG
4150864 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAACTC
*
4150929 ACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAA
258 ACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAA
4150994 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCAGAATT-TTA
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCAGAATTGTT-
* *
4151058 TTGTGCATGCCAAGAAAAATACAAGGATCACGTCAACCAAGTTTGGTGCCAAAAC-TCCATCCGA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACAT-CATCCGA
4151122 AAAAATATTAAAAAATCTCGA
451 AAAAATATTAAAAAATCTCGA
4151143 CCACAAAAAG
Statistics
Matches: 425, Mismatches: 40, Indels: 11
0.89 0.08 0.02
Matches are distributed among these distances:
516 3 0.01
517 289 0.68
518 133 0.31
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.27
Consensus pattern (518 bp):
GCATACGGAGTTCATTCCCAGTCTAACATCGAATCGGACCAAGGGTTACGGCAGCACATGCTGGA
CTCAGGGATGTGCTCGTGCCGCATTTTTCTTCACTGGGGCACCATCACCGGAGCATCGCCGGAGA
ACCTGACCGACAGCATCGGGGTTCCGACGATCGGTGGGGCCGGGGGGTGTGCGCACATAATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAACTCACA
CCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCAGAATTGTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACATCATCCGAAAAAA
TATTAAAAAATCTCGAACCGTAAAATGGTTTGACTTAGGCATATGAAGTTCATTCAAATCTAA
Found at i:4153326 original size:26 final size:26
Alignment explanation
Indices: 4153296--4153348 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4153286 GTTGACTTAG
* *
4153296 GCATACGGAGTTCATTCCTAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
4153322 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4153348 G
1 G
4153349 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4153797 original size:887 final size:880
Alignment explanation
Indices: 4151546--4153910 Score: 3155
Period size: 887 Copynumber: 2.7 Consensus size: 880
4151536 GTTGACTTAG
* *
4151546 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAAATGCTGCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGCG
* * * *
4151611 CTTGGGTATGTGCTGGTGACACATTTTTCTTTGCCGAGGCATCATCGTCGAAGCATCGCCGGAGA
66 CTTGGGCATGTGCTGGTGACGCATTTTTCTTTGTCG-GG-------GTCG-ACCATCGCCGGAGA
* *
4151676 AACTGATCAGCGGCATTGGGGTTCCGACGATC---GGG-GGGGT-GTG-CGCACATGATGTGCGA
122 ACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGCGGGGTGGTGTCGCACATGATGTGCGA
* * *
4151735 TGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
187 TGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACC
* * *
4151800 CCCTTAAAGAGCCTTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
252 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
4151865 GACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGGC
317 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
4151930 ATGCCAACAAAAATACAAGCATCAAGTCTACCAAGTTTGGGGTCAAAAATCCTTCCGAAAAAG--
382 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAGTT
* * * * *
4151993 T-----TCCCGAACTGCAAAAAATTTCAGAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
447 TAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
4152053 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATAGCATTGGC
512 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
4152118 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGTACATCT
577 ACGCAGAAATATGAAGATATCCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCACATCT
* * * *
4152183 CGTCTCTGTGGCCGACGTAGTGCCCGCCCGCCCGCTCCTTTCGTAGGTTGGCTTAGGCATACAGG
642 CGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCTCATTTCGTAGGTTGGCTTAGGCATACAGA
* * * *
4152248 GTTCATTCCCAGTCTAAGATCAGATCATACCGAGGGTTGCTGTAGCAGGATCGGTAGCATACAGA
707 GTTCATTCCCAGTCTAAGATCAGATCA-ACCGAGGGTTGCGGCAGCAAGATCGATAG-ATACAGA
* * * * *
4152313 GGGGGATCGGACCAATCCCCGGCTTGCGCATCCCACCCCTCTGGTCGACTGAGCACCCGCACGCT
770 GGGGGACCGGACCAAGCCCCGACTTACACATCCCACCCCTCTGGTCGACTGAGCACCCGCACGCT
* *
4152378 CGATTCATGGGTTGACTTAGGTATATGGAGTTCATTCTAAGTCTAA
835 CGATTCATGGGTTGACTTAGGCATACGGAGTTCATTCTAAGTCTAA
* * * * * * *
4152424 GTAGACAGAGTTCATTCCCAGTCTAAGATCGGGCCAGACCGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGCG
** * * * * * *
4152489 CTCAGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGATCATCACCGGAGA
66 CTTGGGCATGTGCTGGTGACGCATTTTTCTTTGTCGGGG-----T---C-GACCATCGCCGGAGA
*
4152554 ACCTGACCAGCGGCATTGGGGTTCCGACGATCGTGGGGGCTAGGG-GGTGTGCGCACATGATGTG
122 ACCTGACCAGCGGCATTGGGGTTCCGACGATCG-GGGGGC-GGGGTGGTGT-CGCACATGATGTG
4152618 CGATGGGT-TCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AAGAACTC
184 CGATGGGTGT-TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAA-AACTC
*
4152681 ACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
247 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
4152746 ATGGGGACATTTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTGTTTAGCTGAATTTTT
312 ATGGGGACA-CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* ** *
4152811 TTGTCCATGCCAACAAAAATACAAGGATCACGTCTAAAAAGTTTGGGGCCAAAACTCCTTCCCAA
376 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * *
4152876 AAACTTTTCAAAAATCCCAAACCGTAAAAAGTTTTAAAAAACGTGAAAAATAGAAAACGAGTCGT
441 AAA-GTTT-AAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
*
4152941 CTTGCCATTAAACTTCACGTGAAGGCTT-AGGGACCATTGTATGAATTTACAAGCCATAAAAATG
504 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
4153005 GCATTGGCACACAGAAATATGAAGATATCCCTAAACTCACCTACCACCCTATCGATCTACGGCTT
569 GCATTGGCACGCAGAAATATGAAGATATCCCTAAACCCACCTACCACCATATCGATCCACGGCTT
* * * *
4153070 GCGCATC-CTGTCTCTCTGGTCGGCATAGTGCCTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGC
634 GCACATCTC-GTCTCTCTGGCCGACATA--G--TGCCCGCCCGCCCGCTCATTTCGTAGGTTGGC
* *
4153134 TTAGGTATACAGAGTTCATTCCCAGTGTAAGATCAGACTGC-ACCG-GGGTTGCGGCAGCAAGAT
694 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA-T-CAACCGAGGGTTGCGGCAGCAAGAT
*** ** *
4153197 CGATAG-TACGTAGAGGGGGACCCGG-TGGAGCCCCGACTTACACATCCTGCCCCTCTGG-CTGG
757 CGATAGATAC--AGAGGGGGA-CCGGACCAAGCCCCGACTTACACATCCCACCCCTCTGGTC-GA
* *
4153259 CTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCT-AGTTTAA
818 CTGAGCACCCGCACGCTCGATTCATGGGTTGACTTAGGCATACGGAGTTCATT-CTAAGTCTAA
* *
4153322 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCACATGCTGCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGCG
** *
4153387 CTTGGGCATGTGCTGGTGTTGCATTTTTCTTTGTCGGGGT-G-CCATCGCCGGAGAACCTGACCG
66 CTTGGGCATGTGCTGGTGACGCATTTTTCTTTGTCGGGGTCGACCATCGCCGGAGAACCTGACCA
* *
4153450 GCGGCATTGGGGTTTC-AGCGATCGGGGGGGCCGGGGTGGTGTCCGCACATGATGTGTGATGGGT
131 GCGGCATTGGGGTTCCGA-CGATC-GGGGGG-CGGGGTGGTGT-CGCACATGATGTGCGATGGGT
* *
4153514 GTTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAAGTCACACCCCCTT
192 GTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCCCTT
* *
4153579 AAAGAGCATTTGAGACTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACAC
257 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
4153644 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCC
322 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
*
4153709 AACAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAGGTTTAAA
387 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA-GTTT-AA
* *
4153774 AAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAA
450 AAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
4153839 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
515 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
4153904 CAGAAAT
580 CAGAAAT
4153911 CAAACCGTCG
Statistics
Matches: 1298, Mismatches: 140, Indels: 88
0.85 0.09 0.06
Matches are distributed among these distances:
870 1 0.00
875 1 0.00
877 2 0.00
878 126 0.10
879 1 0.00
882 3 0.00
884 6 0.00
885 1 0.00
886 141 0.11
887 351 0.27
888 200 0.15
889 3 0.00
890 1 0.00
893 1 0.00
894 1 0.00
895 112 0.09
896 72 0.06
897 2 0.00
898 198 0.15
899 73 0.06
900 1 0.00
901 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (880 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGCG
CTTGGGCATGTGCTGGTGACGCATTTTTCTTTGTCGGGGTCGACCATCGCCGGAGAACCTGACCA
GCGGCATTGGGGTTCCGACGATCGGGGGGCGGGGTGGTGTCGCACATGATGTGCGATGGGTGTTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAGTTTAAAAATCC
CGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
TATGAAGATATCCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCACATCTCGTCTCTCT
GGCCGACATAGTGCCCGCCCGCCCGCTCATTTCGTAGGTTGGCTTAGGCATACAGAGTTCATTCC
CAGTCTAAGATCAGATCAACCGAGGGTTGCGGCAGCAAGATCGATAGATACAGAGGGGGACCGGA
CCAAGCCCCGACTTACACATCCCACCCCTCTGGTCGACTGAGCACCCGCACGCTCGATTCATGGG
TTGACTTAGGCATACGGAGTTCATTCTAAGTCTAA
Found at i:4156023 original size:897 final size:898
Alignment explanation
Indices: 4154208--4156743 Score: 3687
Period size: 897 Copynumber: 2.8 Consensus size: 898
4154198 ATCAAATGAT
* * * *
4154208 ATATGAAGATGTGCCTAAACCCACCTACCACCCTTTCGATCCATGGCATGTGCATCCCGTCTCTC
1 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* *
4154273 TGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
66 TGGCCGGTGTAGTGCCCGCCTTCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
* * * *
4154338 ATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCAGCAGCAGGATCGACAGCACATAGAGAGG
131 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACATAGAGGGG
* * *
4154403 GACCTGACTGATCCCCGGCTTGTGCATCCAGCCCCTCTGGTCGGCTGAGCACCCGCACGCTCGTT
196 GACCTGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGCACCCGCACGCTCGTT
* * *
4154468 TTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATATGGAGTTCATTCCCAGTC
261 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* **
4154533 TCAGATCGGATCAGACTGAGGGTTGTGGCAGCACATGTTGGGCTC-AGGCATGTGTTGGTGCCAC
326 TCAGATCGGATCA-ACCGAGGGTTGCAGCAGCACATGTTGGGCTCGA-GCATGTGTTGGTGCCAC
* *
4154597 ATTTTTCTTCGTCGGGGTACCATC-ACTGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGG
389 ATTTTTCTTCGTC-GGG-ACCATCGTC-GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* * * *
4154661 TTCCGACGATCGGGGGGGCGGGGGTGGTGTGCGCACATGATGTGCGATGGGTACCGGTACCTGGC
451 TTCCGACGATCGGGGGGGCCGGGGTGGTGCGCGCACATGATGTGCGATGGGTGCTGGTACCTGGC
4154726 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
516 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
4154791 GGTTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGG
581 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
*
4154856 TCACAAAATCTTGTATACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAATACAA
646 TCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
4154920 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-TCAAAAAAATTTAAAAAAATCCCAAGCC
711 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTCAAAAAAATTTAAAAAAATCCCAAGCC
*
4154984 ACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTACCATGAAACTTCACGTGAA
776 ACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTACCATGAAACTTCACGTGAA
* * *
4155049 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
841 GGCTTAAGGGACCACTGTATGAATTTACAAGACAGAAAAATGGCATTGGCACACAGAA
*
4155107 AAATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
1 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* *
4155172 TGGCCGGTGTAGTTCCCGCCTTCCCGCCCGCTTGTTTCATCAGTTGGCTTAGGCATACGGAGTTC
66 TGGCCGGTGTAGTGCCCGCCTTCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
* * * ** *
4155237 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGTAGGATCGGTAGCACAAAGAGGGG
131 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACATAGAGGGG
* * *
4155302 GACCTGGCCGATCCCCGGCTTGCGCATCCTGCCCTTCTGGGT-GGCTAAGCACCCGCACGCTCGT
196 GACCTGACCGATCCCCGGCTTGCGCATCCTGCCCCTCT-GGTCGGCTGAGCACCCGCACGCTCGT
**
4155366 TTCGTGGGTTGACTT-GGCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
260 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * ** * *
4155430 CTAAGATCGGATCTAACCAAGCATTGCAGTAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCAC
325 CTCAGATCGGATC-AACCGAGGGTTGCAGCAGCACATGTTGGGCTCGAGCATGTGTTGGTGCCAC
* * * *
4155495 ATTTTTCTTTGTCGGCGCACCATCGTCGGAGCATCGCCGGAGAACCTGATCGGCGACATTGGGGT
389 ATTTTTCTTCGTCGG-G-ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGT
* * * *
4155560 TTCGACGATCGGGGGGGCCGGGG-GGTGCGCACACATGATGTGCGACGGGTGCTGGTACTTGG-C
452 TCCGACGATCGGGGGGGCCGGGGTGGTGCGCGCACATGATGTGCGATGGGTGCTGGTACCTGGCC
* * *
4155623 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACACACGCCCCCTGAAAGAGCATTTGAG
517 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
4155688 ATTTTACAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGT
582 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
4155753 CACAAAATCTTGTATACTTCGAGTTTTTAGCTAAATTTTTTTGTACATGCCAAAAAAAATACAAG
647 CACAAAATCTTGTATACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
** * *
4155818 GATCACGTCTACCAAGTTTGGGGTGAAAACTCCTTCT-AAAAAAATTTTAAAAAATCCCGAGCCA
712 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTCAAAAAAATTTAAAAAAATCCCAAGCCA
* *
4155882 CAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAG
777 CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTACCATGAAACTTCACGTGAAG
* **
4155947 GCTTAAGGGACCACTGTATGAATTTACAAGACAGAAAAATGGCATTTGCAGGCAGAA
842 GCTTAAGGGACCACTGTATGAATTTACAAGACAGAAAAATGGCATTGGCACACAGAA
* * *
4156004 ATATAAAGATGTGCCTAAACCCACCTACCGCCTTATCGATCCACGGCTTGCGCATCCCGTCTCTC
1 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * ** *
4156069 TGGCCGATGTAGTGCCCGCCCGT-CCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGAAGTT
66 TGGCCGGTGTAGTGCCCG-CCTTCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTT
** * * * *
4156133 CATTCCCAGTCTAAGATTGGACC-GAATCGAGGGTTGCGACAACAGGATCGACAGCACGTAGAGG
130 CATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGACAGCACATAGAGG
* * * *
4156197 AGGACCCGATC-ATCCCCGGCTTGCGCAT-CTAGCCCCTCTGGTCGACTGAGCACCCGCACGCTC
194 GGGACCTGACCGATCCCCGGCTTGCGCATCCT-GCCCCTCTGGTCGGCTGAGCACCCGCACGCTC
* * *
4156260 GTTTCGAGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTA
258 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
** * *
4156325 GTCTCAGATCACACCGGACCGAGGGTTGCAGCAGCACATGTTGGGCTCGAGCATGTGTTGGTGCC
323 GTCTCAGATCGGATC-AACCGAGGGTTGCAGCAGCACATGTTGGGCTCGAGCATGTGTTGGTGCC
* * *
4156390 ACATTTTTCTTCATCGGG------GT--G-CCATCGTCGGAGAACCTGACCGACGGCATTGGGGT
387 ACATTTTTCTTCGTCGGGACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGT
* * *
4156446 TCCGACGAT-TGGGGGGCCGGGGGGTGGTGCGTGCACATGATGTGCGATGGATGCTGGTACCTGG
452 TCCGACGATCGGGGGGGCC--GGGGTGGTGCGCGCACATGATGTGCGATGGGTGCTGGTACCTGG
* **
4156510 CCCTTATATTGGCCCCCTATCCCTCATCAAACGTTGAGAACTCACACCCCCTTAAAGAGCATTTG
515 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTG
* * *
4156575 AGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGACACTTTTTTCAAATG
580 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * * *
4156640 GTCACAAAATCTTGTACACTACGAGTTTTTAGCTGAATTTTTTTTTGGATGCCAACAAAAATACA
645 GTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* *
4156705 AGGATCATGTTTACCAAGTTTGGGGCCAAAACTCCTTCT
710 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT
4156744 TCATTCCTAG
Statistics
Matches: 1461, Mismatches: 160, Indels: 42
0.88 0.10 0.03
Matches are distributed among these distances:
885 8 0.01
886 38 0.03
887 5 0.00
888 34 0.02
889 213 0.15
895 5 0.00
896 231 0.16
897 502 0.34
898 175 0.12
899 247 0.17
900 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGGTGTAGTGCCCGCCTTCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACATAGAGGGG
GACCTGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGCACCCGCACGCTCGTT
TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
TCAGATCGGATCAACCGAGGGTTGCAGCAGCACATGTTGGGCTCGAGCATGTGTTGGTGCCACAT
TTTTCTTCGTCGGGACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCG
ACGATCGGGGGGGCCGGGGTGGTGCGCGCACATGATGTGCGATGGGTGCTGGTACCTGGCCCTTA
TATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
AAATCTTGTATACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTCAAAAAAATTTAAAAAAATCCCAAGCCACAAA
AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTACCATGAAACTTCACGTGAAGGCTT
AAGGGACCACTGTATGAATTTACAAGACAGAAAAATGGCATTGGCACACAGAA
Found at i:4156315 original size:26 final size:26
Alignment explanation
Indices: 4156279--4156328 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
4156269 TTTGACTTAG
4156279 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
4156305 GCATACGGAGTTCATTCCTAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
4156329 CAGATCACAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4156922 original size:26 final size:26
Alignment explanation
Indices: 4156892--4156944 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
4156882 GTTGACTTAG
*
4156892 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCACAGTCTAA
*
4156918 GCATACGAAGTTCATTCACAGTGTAA
1 GCATACGAAGTTCATTCACAGTCTAA
4156944 G
1 G
4156945 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCACAGTCTAA
Found at i:4157210 original size:172 final size:172
Alignment explanation
Indices: 4156918--4157228 Score: 450
Period size: 172 Copynumber: 1.8 Consensus size: 172
4156908 CCCAGTCTAA
* * *
4156918 GCATACGAAGTTCATTCACAGTGTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTAGG
1 GCATACGAAGTTCATTCACAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCACATGCTAGG
* *
4156983 CTCGGGCATGTGTTGGTGCCGCATCTTTCTTCTCCGAGGCACCATCGCTGGAGCATCGTC-GAAG
66 CTCGGGCACGTGTTGGTGCCGCATCTTTCTTCTCCGAGGCACCATCGCTGGAGCATCGCCAG-AG
4157047 AACCTGACCGGGGTTATTGGGGTTCCAGCGATCGGGTGGGTGT
130 AACCTGACCGGGGTTATTGGGGTTCCAGCGATCGGGTGGGTGT
* * *
4157090 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACCGAGGGTTACGGTAGCACATGCTGG
1 GCATACGAAGTTCATTCACAGTCTAAGATCAGACCAG-ACCGAGGGTTACGGTAGCACATGCTAG
* * * *
4157154 GCTCGGGCACGTGTTGGTGCCGTATTTTTCTTCGT-CGGGGCACCATC-ATCGGAGCATCGCCAG
65 GCTCGGGCACGTGTTGGTGCCGCATCTTTCTTC-TCCGAGGCACCATCGCT-GGAGCATCGCCAG
4157217 AGAACCTGACCG
128 AGAACCTGACCG
4157229 AAGGCATTGG
Statistics
Matches: 123, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
171 2 0.02
172 119 0.97
173 2 0.02
ACGTcount: A:0.20, C:0.25, G:0.32, T:0.23
Consensus pattern (172 bp):
GCATACGAAGTTCATTCACAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCACATGCTAGG
CTCGGGCACGTGTTGGTGCCGCATCTTTCTTCTCCGAGGCACCATCGCTGGAGCATCGCCAGAGA
ACCTGACCGGGGTTATTGGGGTTCCAGCGATCGGGTGGGTGT
Found at i:4157353 original size:132 final size:132
Alignment explanation
Indices: 4157129--4157383 Score: 379
Period size: 132 Copynumber: 1.9 Consensus size: 132
4157119 CAGACCGAAC
* *
4157129 CGAGGGTTACGGTAGCACATGCTGGGCTCGGGCACGTGTTGGTGCCGTATTTTTCTTCGTCGGGG
1 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCACGTGTTGGTGCCGCATTTTTCTTCGTCGGGG
4157194 CACCATCATCGGAGCATCGCCAGAGAACCTGACCGA-AGGCATTGGGGTTCTGACGATCAAACCA
66 CACCATCATCGGAGCATCGCCAGAGAACCTGACCGAGA-GCATTGGGGTTCTGACGATCAAACCA
4157258 GAT
130 GAT
*
4157261 CGAGGGTTGA-GGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGG
1 CGAGGGTT-ACGGCAGCACATGCTGGGCTCGGGCACGTGTTGGTGCCGCATTTTTCTTCGTCGGG
* * * * * * * *
4157325 GCACCATCGTTGGAGCATTGCCGGAGAACCTGATCGGGAGTATTGGGGTTCTGGCGATC
65 GCACCATCATCGGAGCATCGCCAGAGAACCTGACCGAGAGCATTGGGGTTCTGACGATC
4157384 GGGGGTGCCG
Statistics
Matches: 110, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
132 108 0.98
133 2 0.02
ACGTcount: A:0.18, C:0.24, G:0.35, T:0.24
Consensus pattern (132 bp):
CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCACGTGTTGGTGCCGCATTTTTCTTCGTCGGGG
CACCATCATCGGAGCATCGCCAGAGAACCTGACCGAGAGCATTGGGGTTCTGACGATCAAACCAG
AT
Found at i:4158200 original size:159 final size:159
Alignment explanation
Indices: 4157936--4158285 Score: 477
Period size: 159 Copynumber: 2.2 Consensus size: 159
4157926 TGTCGATTGG
* * * ** *
4157936 CTTAGGCATACGAAGTTCATTCCCATTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAAGGTTGCAGCAACAGGAT
* * * **
4158001 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCTTGCCCC-TCTGGCCGGTT
66 CGACAGCACGCAGAGGGGGACACGACCGATCCCCGGCTTGCACATCCTGCCCCATC-GGCCGACT
4158065 GAGCACCCGCACGCTCATTTCATGGGTTGA
130 GAGCACCCGCACGCTCATTTCATGGGTTGA
* * *
4158095 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAAGGTTGCAGCAACAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAAGGTTGCAGCAACAGGAT
** * *
4158160 CGACAGCACGCAGAGGGGGACACGGTCGATCCCCGGCTTGCGCATCCTGCCCCATCGGCTGACTG
66 CGACAGCACGCAGAGGGGGACACGACCGATCCCCGGCTTGCACATCCTGCCCCATCGGCCGACTG
* **
4158225 AGCACCCGTACGCTCATTTTGTGGGTTGA
131 AGCACCCGCACGCTCATTTCATGGGTTGA
* *
4158254 ATTAGGCATACAGAGTTCATTCCCAATCTAAG
1 CTTAGGCATACGGAGTTCATTCCCAATCTAAG
4158286 CATACGGAGT
Statistics
Matches: 167, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
159 165 0.99
160 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (159 bp):
CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAAGGTTGCAGCAACAGGAT
CGACAGCACGCAGAGGGGGACACGACCGATCCCCGGCTTGCACATCCTGCCCCATCGGCCGACTG
AGCACCCGCACGCTCATTTCATGGGTTGA
Found at i:4158295 original size:26 final size:26
Alignment explanation
Indices: 4158259--4158311 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4158249 GTTGAATTAG
4158259 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
4158285 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
4158311 G
1 G
4158312 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:4158603 original size:172 final size:172
Alignment explanation
Indices: 4158285--4158620 Score: 494
Period size: 172 Copynumber: 2.0 Consensus size: 172
4158275 CCCAATCTAA
* * * *
4158285 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAACGGTTACGGCAGCACATGCTGGG
1 GCATACAGAATTCATTCCCAGTCTAAGATCAGACCGGACCAACGGTTACGGCAGCACATGCTGGG
* * * **
4158350 CTCGGGCATGTGTTGGTGCCACATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCACGTGTTGGTGCCACATTTTTCTTCACCAGGGCACCATCGTCGAAGCATCGCCAAAGA
* * *
4158415 ACTTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGGTGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGTGT
* * *
4158457 GCATACAGAATTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACAGAATTCATTCCCAGTCTAAGATCAGACCGGACCAACGGTTACGGCAGCACATGCTGGG
** *
4158522 CTCGGGCACGTGTTGGTGCCACATTTTTCTTCGTC-GAGGCACCATCGTCGAAGCATTGCCAAAG
66 CTCGGGCACGTGTTGGTGCCACATTTTTCTTCACCAG-GGCACCATCGTCGAAGCATCGCCAAAG
4158586 AACCTGACCGACGGCATTGGGGTTCCGACGATCGG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGG
4158621 ACCAGACCGA
Statistics
Matches: 145, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
171 1 0.01
172 144 0.99
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.22
Consensus pattern (172 bp):
GCATACAGAATTCATTCCCAGTCTAAGATCAGACCGGACCAACGGTTACGGCAGCACATGCTGGG
CTCGGGCACGTGTTGGTGCCACATTTTTCTTCACCAGGGCACCATCGTCGAAGCATCGCCAAAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGTGT
Found at i:4158752 original size:132 final size:132
Alignment explanation
Indices: 4158483--4158744 Score: 355
Period size: 132 Copynumber: 2.0 Consensus size: 132
4158473 CCCAGTCTAA
* * *
4158483 GATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCACGTGTTGGTGCCACATTT
1 GATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCACGTGTTGGTGCCACATTT
* * **
4158548 TTCTTCGTCGAGGCACCATCGTCGAAGCATTGCCAAAGAACCTGACCGACGGCATTGGGGTTCCG
66 TTCTTCGCCGAGGCACCATCATCGAAGCATCACCAAAGAACCTGACCGACGGCATTGGGGTTCCG
4158613 AC
131 AC
* *
4158615 GATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCACATTT
1 GATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCACGTGTTGGTGCCACATTT
* * ** * ** *
4158680 TTCTTCGCCTG-GGCACCATCATCGGAGCATCATCGGAGAACCTGATCGGGGGTATTGGGGTTCC
66 TTCTTCGCC-GAGGCACCATCATCGAAGCATCACCAAAGAACCTGACCGACGGCATTGGGGTTCC
4158744 G
130 G
4158745 GTGATCGGGG
Statistics
Matches: 112, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
132 111 0.99
133 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.33, T:0.22
Consensus pattern (132 bp):
GATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCACGTGTTGGTGCCACATTT
TTCTTCGCCGAGGCACCATCATCGAAGCATCACCAAAGAACCTGACCGACGGCATTGGGGTTCCG
AC
Found at i:4161051 original size:25 final size:26
Alignment explanation
Indices: 4161015--4161066 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
4161005 GTCGACTTAG
*
4161015 GCATACGAAGTTCATTCCTA-TCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
4161040 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
4161066 G
1 G
4161067 ATCAGTCCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:4162348 original size:889 final size:890
Alignment explanation
Indices: 4159438--4163183 Score: 4843
Period size: 899 Copynumber: 4.2 Consensus size: 890
4159428 GCACCCATGT
* * *
4159438 GCACATGATGTGCGATGGGTTCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
4159503 TCGATAACTCACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
66 TCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
4159568 AGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGC
131 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * ** *
4159633 TGAATTGTTTTGTGCATGCCAAGAAAAATACAAGGATCACATCTACCATGTTTACGGCTAAAACT
196 TGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
*
4159698 CCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
261 CCTTCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAA
*
4159763 ACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTCAAGGGACCATTGTATGAATTTACAAGCC
326 ACGAGTCGTCTTG-CATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * * *
4159828 ATAAAAATGGCATTGCCATGCAGAAATATAAAGATGTGCCTAAACTCACCTACCACCTTATCGAT
390 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * ** * ***
4159893 CCACGGCTTGCGCATCCCGTCTCTTTGGCCAACATAATATCTGCCCGCCCATTTGTCCGCTCGTT
455 CCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCACCCG-CCGCTCGTT
* ** *
4159958 TCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGC
519 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGT
* * * * * * * * * * *
4160023 GACAGCAGGTTCGGCAACATGTAGAGAGAGACCCGACCAATCACCGGCTCGCGCATCCTGCCCCT
584 GGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * *
4160088 CTTGCCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCA
649 CTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCA
** * *
4160153 GTCTAAGCATGTAGAGTTCATTCCCAGTCTAAGATCGGACCGGAC-CGAGGGTTACGGCAGCACA
714 GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTCGAGGGTTACGGCAGCACA
* ** * * ** * *
4160217 TGCTAGGCTCGGGCATGTGCCGCTGAC-CATTTTTCTTCGTC-GG--AGCATCGCCGGAGAACCT
779 TGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGACACCATCGTCGGAGAACCT
* ** *
4160278 GAACGACGGCATTGGGGTTCCGACGAT-GGGGGGCCAGGGGGTGTGC
844 GACCGACGATATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGC
*
4160324 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCCCTCATCAAACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * * *
4160389 TCGAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCTAGTAGCCATTAA
66 TCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
4160454 AGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
131 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *** * *
4160519 TAAATTTTTTTGTGCATGCCAAGAAAAATACACCAATCATGTCTATCAAGTTTGGGGCCAAAACT
196 TGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * **
4160584 CCTTTCAAAAAAATTTTAAAAAATCCCGAACCAAAAAAAGTTTTGAAAATCATGAAAAATAGAAA
261 CCTTCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* * *
4160649 ACGAGTCGTCTTGCTATGAAACTTCACGTGAAAGCTTAAAGGACCATTGTATGAATTTACAAGCC
326 ACGAGTCGTCTTGC-ATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
4160714 ATAAAAATCGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATTGAT
390 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* *
4160779 CCACGGCTTGCGCATCCCGTCTCTCTGGCC-GACGTAGTGCCCGCTCG-CC-CGC-CCGCTCGTT
455 CCACGGCTTGCGCATCCCGTCTCTCTGGCCAG-CGTAGTGCCCGCCCGCCCACCCGCCGCTCGTT
* *
4160840 TCATCGGTTGGCTTAGGCATACGGAGTTCATT-CCTGATCTAAGATTAGACTGGACTGAGGGTTG
519 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG-TCTAAGATCAGACTGGACTGAGGGTTG
* * * * *
4160904 TGGCAGTAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTTACGTATCCCGCCCC
583 TGGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
* * *
4160969 TCTGGTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTCGACTTAGGCATAC-GAAGTTCATTCC
648 TCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAA-TTCATTCC
* * * * **
4161033 TA-TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGTCCAGA-TCGAGGGTTATGGTGGCA
712 CAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTCGAGGGTTACGGCAGCA
* * * *
4161096 CATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTGTTCGTCGGGGCACCATCGTCGGAGCAT
777 CATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTC-ACCGGG-A-CA----C----CAT
* * *
4161161 CGTCGGGGAGAACCTGACCGACGGTATTGGGGTTTCGACGATCGGGGGGCCGTGGGGTGTGC
831 CGTC--GGAGAACCTGACCGACGATATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGC
* * * * *
4161223 GCACATGATGTGTGATGGATGCTGGTACTTGGCTCTTATATTGGCCTCCTTTCCCTCATCAAACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
4161288 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
66 TCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
4161353 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCAAGTTTTTAGC
131 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * *
4161418 TGAATTTTTTTATGCATGCTAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACT
196 TGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * *
4161483 TCTTCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGGAA
261 CCTTCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAA
4161548 ACGAGTCGTCTTGCAGTGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
326 ACGAGTCGTCTTGCA-TGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
4161613 AAAAAAATGGCATTGGCACGCTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
390 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
*
4161678 CCACAGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCACCCGCC-CTCGTTT
455 CCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCACCCGCCGCTCGTTT
* * ** *
4161742 CGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGGTTGAACTGAGGGTTGTG
520 CATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGTG
* * * * * * **
4161807 GCAGTAGGATC-ACAGCACGCAGAGGGGGACCCAACCTATCCCCGGCTTGTGCAGCCCGCTTCTC
585 GCAGCAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * * * * *
4161871 TGGCTGGCTGAGCACCTGCATGCTCG-TTCTTGGGTTGACTTAGGCAAACAGAATTCATTCCTAG
650 TGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAG
* * * *
4161935 ACTAAGCATACAGAGTTCATTCCCAGCCTAAGATCAGACCAG-CTCGAGGGTTGCGGCAGCACAC
715 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTCGAGGGTTACGGCAGCACAT
* * * * *
4161999 GCTGGGCTTGGGCATGTGTTGGTGCTGCATTTTTCTTCACCGAGACACCATCGTCGGTGAACTTG
780 GCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGACACCATCGTCGGAGAACCTG
* * *
4162064 ACCGACGATATTGGGGGTTCTGGCAATCGAGGGGGCCGGGGGGTGTGC
845 ACCGACGATATT-GGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGC
*
4162112 GCGCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
4162177 TCAAGAAATCACACCCTCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
66 TCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
4162242 AGTGTCTGAAATGGGGACACTTTTTTCAAATCGTCACAAAATCTTATACACTTCGAGTTTTTAGC
131 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
*
4162307 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
196 TGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* ** *
4162372 CCTTCTGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAA
261 CCTTCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAA
*
4162437 ACGAGTCGTCTTGC-----A---C--GTGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCCA
326 ACGAGTCGTCTTGCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
4162492 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
391 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * ** ** * *
4162557 CACGGCTTGCGTC-TCCCGTCTCTCTAGCCGGAGTTGTGCCTACCCGCCCGTCCGCTCGGTCATT
456 CACGGCTTGCG-CATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCACCCGC-CGCTCGTT
* * * * **
4162621 TCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTCAT
519 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGT
* ** * * * **
4162686 GGCAGCAGGATCGACAGCAAGCAGAGGGGGACCCGGTCGATCCCTGACTTGCGCATCCCACCCAG
584 GGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * * *
4162751 CTGGCCGGCTGAGCACCCGCAGGTTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCA
649 CTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCA
** * * ** *
4162816 GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGATGGGGCAGTACA
714 GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTCGAGGGTTACGGCAGCACA
** * * *
4162880 TGCTGGGCTCAAGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGAACTT
779 TGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGACACCATCGTCGGAGAACCT
* * * * *
4162945 GACCTACGAAATTGGGGTTCCGGCGATCAGGGGGGTCGGGGGGTGTAC
844 GACCGACGATATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGC
* * * *
4162993 GCACATGATGTGCAATAGGTGCTGGTACTTAGCCCTTATATT--TCCCCTATCCCTCATTC-AAC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA-TCAAAC
* **
4163055 CTGGGAGAACTCACA-CCCCTTAAAAAGCATTTGAGATTTTTTA--TTT-CTGCCAGTAGTCCAT
65 CT-CGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CCAT
* *
4163116 T-AAGTGTCCTTAAAAT-GGGACACTTTTTTCAAATGGTCACCAAAAATCTTGTACACTTCAAAG
128 TAAAGTGT-C-TGAAATGGGGACACTTTTTTCAAATGGTCA-C-AAAATCTTGTACACTTC-GAG
4163179 TTTTT
188 TTTTT
4163184 TTTTTAAAGG
Statistics
Matches: 2500, Mismatches: 311, Indels: 104
0.86 0.11 0.04
Matches are distributed among these distances:
876 16 0.01
877 31 0.01
878 150 0.06
879 61 0.02
880 90 0.04
881 208 0.08
882 330 0.13
883 3 0.00
884 2 0.00
885 3 0.00
886 450 0.18
887 19 0.01
888 13 0.01
889 338 0.14
893 1 0.00
896 6 0.00
897 2 0.00
898 35 0.01
899 506 0.20
900 157 0.06
901 74 0.03
902 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (890 bp):
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAA
ACGAGTCGTCTTGCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCACCCGCCGCTCGTTTC
ATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGTGG
CAGCAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGT
CTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTCGAGGGTTACGGCAGCACATG
CTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGACACCATCGTCGGAGAACCTGA
CCGACGATATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGC
Found at i:4162826 original size:26 final size:26
Alignment explanation
Indices: 4162796--4162848 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4162786 GTTGACTTAG
4162796 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
4162822 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
4162848 G
1 G
4162849 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:4164452 original size:26 final size:26
Alignment explanation
Indices: 4164423--4164475 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
4164413 GTTGACATAG
*
4164423 GCATACGGAGTTTATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* * *
4164449 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
4164475 G
1 G
4164476 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:4165353 original size:26 final size:26
Alignment explanation
Indices: 4165324--4165376 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4165314 GTTGACTTAG
*
4165324 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
4165350 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4165376 G
1 G
4165377 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4166252 original size:26 final size:26
Alignment explanation
Indices: 4166216--4166268 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
4166206 GTTGACTTAG
*
4166216 GCATACAGAGTTTAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
* **
4166242 GCATACTGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
4166268 G
1 G
4166269 ATTGGACAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:4167148 original size:26 final size:26
Alignment explanation
Indices: 4167118--4167170 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
4167108 GTTGACGTAG
4167118 GCATAC-GAAGTTCATACCCAGTCTAA
1 GCATACAG-AGTTCATACCCAGTCTAA
*
4167144 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
4167170 G
1 G
4167171 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAGTCTAA
Found at i:4167768 original size:893 final size:893
Alignment explanation
Indices: 4163725--4168804 Score: 6887
Period size: 893 Copynumber: 5.7 Consensus size: 893
4163715 TCGCGGGGCC
4163725 GGAGGGGTGTGAGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
1 GGAGGGGTGT--GCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
4163790 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTA
64 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
4163855 CCAGTAGCCATTAAAGTGTCTAAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACAC
129 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * ** *
4163920 TTCGAATTTTTAAC-GAAATTTTTTTGTGCAAGCCATTAAAAATACAAGGATCACGTCTACCATG
194 TTCGAGTTTTTAGCTG-AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * *
4163984 TTTGGGACTAAAAATCCTTCCAAAAAAATTTTAAAAAAATCTCGAACC-ACAAAAAGTTTCAAAA
258 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAATCTCGAACCTA-AAAAAGTTTCAAAA
* * * *
4164048 ATCATGAAAAGTAGAAAACTAGTCGTCTTGCCATGAAACTTCACATTAAGGCTTAAGGGACCATT
322 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * *
4164113 GTATGAATTTACAAGCCATAAAAATGGCATTAGCATGCAGAAATATGAAGATGTGCCTGAACCAA
387 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* *
4164178 CCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGAC---GT---CG--TGC
452 CCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * * *
4164235 CCGCCCACTCGTTTTGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCA
517 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
* ** * * * *
4164300 GACTGAGGGTTGTGACAGTAGGATTGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGC
582 GACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGC
* * *
4164365 GCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACATAGGCATACG
647 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
* * * *
4164430 GAGTTTATTCCCAATCTAAGCATATGGAGTTCATTCTCAGTCTAAGATCGGACCGGACCGAGGGT
712 AAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * * *
4164495 TGCGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTC-TCGTCGGTGCACCATC
777 TGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC
* * * * * *
4164559 ATCAGAGCATTGTCGAAGAACCTGATCGGCGGCATTGGGGTTCC-GACGATCGGGGGG
842 ATCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCAG-TGATC-----G
* * * *
4164616 GCCGGGGGGTGAGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTA
1 G--GAGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
4164681 TCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGTTG
64 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
4164746 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
129 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
4164811 TTCGAGTTTTTAGCTAAATTGTTTTGTGCATGCCAACAAAAAAATACAAGGATCACGTCTACCAA
194 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC--AAAAATACAAGGATCACGTCTACCAA
* *
4164876 GTTTGGGGCCAAAACTCATTCCGAAAAAATTTTAAAAAAATCTCGAA-CTGCAAAAAGTTTCAAA
257 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAATCTCGAACCT-AAAAAAGTTTCAAA
* * * *
4164940 AATCATGAAGAATAGAAAATGAGTTGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCAT
321 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
*
4165005 TGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
386 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * *
4165070 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGCGCCCGCCAG
451 ACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* * * * * *
4165135 CCCGCCCGTTCGTTTCCTCGGTTGGCTTTGCCATACGGAGTTCATTCCCAGTCTAAGATTGGATC
516 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * *
4165200 AGATCGAGTGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCAACCGATCCCCGGCTTG
581 AGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTG
* * * *
4165265 CGCATCCTGCCCCTCTGGCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
646 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
* *
4165330 GGAGTTTATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
711 GAAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* * *
4165395 TTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCAT
776 TTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCAT
* * * *
4165460 CATCGGAGCATTGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGG
841 CATCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCAGTGATC--G
*
4165515 GGAGCGGGGGGGTGTGAGCACACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
1 GGA-----GGGGTGT--GCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
4165580 CCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
59 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
4165645 TGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTG
124 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * * *
4165710 TTCACTTTGAATTTTTAGCTGAATTTTTTT-TGCATGCCAACAAAAATAAAAGGATCATGTCTAC
189 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* *
4165774 CAAGTTTGAGGCCAAAACTCCTTCCAAAAAAATTTT-AAAAAATC-CTGAACC-ACAAAAAGTTT
254 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAATCTC-GAACCTA-AAAAAGTTT
* * * * *
4165836 CGAAAATCATGAAAAGTAGAAAACTAGTTGTCTTGCCATGAAACTTCACGTTAAGGCTTAAGGGA
317 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
4165901 CCATTGTATGAATTTACAAGCCGTAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
382 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* *
4165966 ACCCACCTACCACCCTATCGATCCACGACTTACGCATCCCGTCTCTCTGGCCGAC---GT---CG
447 ACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * * * *
4166025 --TGCCCGCCCGCTCGTTTTGTCGGTTAGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTG
512 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * * *
4166088 GACCAGACTGAGGGTTATGACAGTAGGATTGGTAGCACGCAGAGGGGGACCCGATCGATCCCTGG
577 GACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGG
* * * *
4166153 CTTACGCATCCCGCCCCTCTGGCCGGTTGAGTGCCCGCACGCTCCTTTCGTGGGTTGACTTAGGC
642 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGC
* * * * *
4166218 ATAC-AGAGTTTAATCCCAGTCTAAGCATACTGAGTTCGTTCCCAGTCTAAGATTGGACAGGACC
707 ATACGA-AGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * * *
4166282 GAGGGTTGTGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCTCCGGGGT
771 GAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGC
* * * * * * *
4166347 ACCATCGTCGGAGAATCGCCAGAGAACCTGACTGGCGGCATTGGGGTTCCGGTGATCGGGGG
836 ACCATCATCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCAGTGATC----G
*** * **
4166409 GGCAGGGGGGGTGTGGGTACATCATGTGCGATGGGTGCTGGTACTTGGCCCTTATATAT-GCTTC
1 GG-A---GGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT-TGGCCCC
* * *
4166473 CTATCCCTCATCAAACCTCGAGAACTCATAACCCCTTAAAGAGCATTTAAGATTTTACAGGTTTG
61 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
** * *
4166538 CAACCAGCAGCCATTAAAGTGTCTGAAATGGGGA-ACTTTCTTCAAATGGTCACAAAATCTTGTA
126 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
4166602 CACTTCGAG-TTTTAGCTGTATTTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCA
191 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* **
4166666 AGTTTGGGGCCAAAACTCATTCCGAAAAAATTTTAAAAAAATCTCGAACCGCAAAAAGTTT-AGA
256 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAATCTCGAACCTAAAAAAGTTTCA-A
* * * *
4166730 AAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAGGGGACCA
320 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
***
4166795 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACC
385 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * *
4166860 CACCTACCACCCTATCGATCCACGGCTTGCACATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCC
450 CACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * ** * *
4166925 GCCCGCCCGCCGCTCGTTTCATCGGTTGGCCTAGGCATATAGAGTTCATTCCTAGTCTAAGATCA
515 GCCCG--C-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * *
4166990 AACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGT
577 GACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGG
* * * * *
4167055 CTTGTGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGGTCATTTCATGGGTTGACGTAGGC
642 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGC
* * * * *
4167120 ATACGAAGTTCATACCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCT
707 ATACGAAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* *
4167185 AGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCA
772 AGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCA
* *
4167250 CCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCAGTGATC-
837 CCATCATCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCAGTGATCG
* *
4167306 GGAGGGGTGTGCACACATGATGTGCGATGTGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATC
1 GGAGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
4167371 CCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
66 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
4167436 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTT
131 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
4167501 CGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
196 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * * * **
4167565 GGGGCCAAAAATCCTTCTGAAAAGATTTT-AAAAAATCGCTAACCTAAAAAAGTTTGAAAAATTG
261 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAATCTCGAACCTAAAAAAGTTTCAAAAATCA
* *
4167629 TGAAAAATAGAAAACAAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
326 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *** *
4167694 GAATTTACAAGCCATAAAAATGGCAATGGCACATAGAAATATAAAGATGTGCCTAAACCCACCTA
391 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
4167759 CCGCCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGGCGGTGTAGTGCCCGCCCGCCCGC
456 CCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* * * ** * *
4167824 CCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCTAAACTAAGATCAGACTAGACC
521 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* * * * *
4167889 GAGGGTTGA-GGCAGCAAGATCGACAGCATGCAGAGGGGGACCCGATCGATCCCCGACTTGCACA
586 GAGGGTT-ACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCA
* * * * *
4167953 TCTCGCCACTCTGGCCGACTGAGGGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACCG-A
650 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA-CGAA
* * * * *
4168017 GTTCATTCCCAATCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTG
714 GTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * * * * * * *
4168082 CGGCAACACATTCTGGGCTCGAGCTTGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCAC
779 CGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCAT
* *
4168147 CGGAGCATCGTCGGAGAACCTGACCGACAGCATTGGGGTTCCGACT-ATCGGGG
844 CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCC-AGTGATC---G
* * * *
4168200 GCCGGGGGGTGTGCGCACATGATGTGCAATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
1 G--GAGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
4168265 TCCCTCATCAAACCTC-ATGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCT
64 TCCCTCATCAAACCTCGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
4168329 GCCAGTAGCCATTAAAGTGTATGAAATGGGGATACTTTTTTAAAATGGTCACAAAATCTTGTACA
128 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
4168394 CTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAT
193 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* *
4168459 TTTGGGGCCAAAACTCC-TCCTGAAAAAATTTT--AAAAATCTCGAATCGT-AAAATGTTTCAAA
258 TTTGGGGCCAAAACTCCTTCC-GAAAAAATTTTAAAAAAATCTCGAA-CCTAAAAAAGTTTCAAA
* * *
4168520 AATCAGGAAAAATTGAAAACGAGTCGTCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCAT
321 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * *
4168585 TGTATAAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCTTAAACCC
386 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
*
4168650 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
451 ACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
4168715 CCCGTCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
516 CCCG--C-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* *
4168780 GA-CAGGACCAAGGCTTACGGCAGCA
577 GACCA-GACCGAGGGTTACGGCAGCA
4168805 CATGTTGGGC
Statistics
Matches: 3734, Mismatches: 383, Indels: 135
0.88 0.09 0.03
Matches are distributed among these distances:
889 17 0.00
890 420 0.11
891 531 0.14
892 334 0.09
893 612 0.16
894 113 0.03
895 19 0.01
896 409 0.11
897 70 0.02
898 1 0.00
899 16 0.00
900 258 0.07
901 336 0.09
902 390 0.10
903 13 0.00
904 195 0.05
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GGAGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAATCTCGAACCTAAAAAAGTTTCAAAAATCA
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
GAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCAT
CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGT
TTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG
GTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCG
GAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCAGTGATCG
Found at i:4168037 original size:26 final size:26
Alignment explanation
Indices: 4168008--4168060 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4167998 GTTGACTTAG
4168008 GCATACCGAGTTCATTCCCAATCTAA
1 GCATACCGAGTTCATTCCCAATCTAA
* * *
4168034 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACCGAGTTCATTCCCAATCTAA
4168060 G
1 G
4168061 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAATCTAA
Found at i:4171003 original size:712 final size:715
Alignment explanation
Indices: 4169634--4171107 Score: 2211
Period size: 712 Copynumber: 2.1 Consensus size: 715
4169624 CCAGTGTAAA
* * * *
4169634 CATACAGAGTTCATTCCCAGTCTAAGA-ACAGACCGGACCGAGAGTTGCGACAGCACATGCTAGG
1 CATACGGAGTTCATTCCCAGTCTAAGATACAGACCGGACCAAGAGTTGCGACAACACATGCTAGA
* * * * *
4169698 CTCGGGCATGGGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGCTGGAGCATCGCCGAAGA
66 CTCGAGCATGGGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGCCGAAGA
* * *
4169763 ACCTGACTGGCAGCATTGGGGTTCGGCAATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGA
131 ACCTGACTGACAGAATTGGGGTTCGGCAATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
4169828 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACACC
4169893 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
4169958 GACACTTTTTTCAAATGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGC
326 GAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGC
* * *
4170023 ATGCTAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGACCAAAACTCCATCCGAAAAAATT
391 AAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCATCCGAAAAAATT
* ** * *
4170088 TTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAATAGGAGTCGTCTTGCC
456 TGAAAAAATCCCGAACCACAAAAAGTTTCGAAAATCATGAAAAATAGAATAGGAGTCGTCTTGCC
*
4170153 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
521 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTG
4170218 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
586 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
4170283 CCCGCCTCTCTAGCCGACGTA-G-T-GCCCG-CC-C-ACCCGCTCGTTCCGTCGGTTGGCTTATG
651 CCCGCCTCTCTAGCCGACGCAGGCTCGCCCGCCCGCTACCCGCTCGTTCCATCGGTTGGCTTA-G
4170342 G
715 G
* * * ** *
4170343 -ATACGGAGTTCATTCCCAATCTAAGATA-AGATCGGACCAAGGGTTTTGGCAACACATGCT-GC
1 CATACGGAGTTCATTCCCAGTCTAAGATACAGACCGGACCAAGAGTTGCGACAACACATGCTAG-
* * *
4170405 ACTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGTCGGAG
65 ACTCGAGCATGGGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGCCGAAG
* *
4170470 AACCTGACTGACGGAATTGGGGTTCCGGCGATCGGGGTGGCCGGGAGGGGTGTGCGCACATGATG
130 AACCTGACTGACAGAATTGGGGTT-CGGCAATCGGGG-GGCC-GG-GGGGTGTGCGCACATGATG
* *
4170535 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTTGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTC
4170600 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TCGA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GA
* *
4170664 AATGGGGAAACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
320 AATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTT
* * * *
4170729 TTGTGCAAGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
385 TTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCATCCGAA
* * *
4170794 AAAATTTGAAAAAATCCCGAACCACAAAACGTTTCGAAAATCATGAAAATTTGGAA-AGGAGTCG
450 AAAATTTGAAAAAATCCCGAACCACAAAAAGTTTCGAAAATCATGAAAA-ATAGAATAGGAGTCG
* *
4170858 TCTTGCCATGAAGCTTCACGTGAAGGCTTAAGGGTCCATTGTATAAATTTACAAGCCATAAAAAT
514 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAAT
* * *
4170923 GGCATTGGTACT-TAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGC
579 GGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
4170987 TTGCGCATCTCGCCTCTCTGGCCGACGCAGGGCTCGCCCGCCCGTCTGCCCGCTCGTTTCATCGG
643 TTGCGCATCCCGCCTCTCTAGCCGACGCA-GGCTCGCCCGCCCG-CTACCCGCTCGTTCCATCGG
4171052 TTGGCTTAGG
706 TTGGCTTAGG
* * *
4171062 CATACGGAGTTCATTCCCTGTCTAAGAT-CTGACCAGACCAAGAGTT
1 CATACGGAGTTCATTCCCAGTCTAAGATACAGACCGGACCAAGAGTT
4171108 ACGATAGTAG
Statistics
Matches: 683, Mismatches: 63, Indels: 27
0.88 0.08 0.03
Matches are distributed among these distances:
707 1 0.00
708 126 0.18
709 12 0.02
710 3 0.00
711 3 0.00
712 460 0.67
713 5 0.01
714 1 0.00
715 1 0.00
716 5 0.01
717 2 0.00
719 3 0.00
720 61 0.09
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (715 bp):
CATACGGAGTTCATTCCCAGTCTAAGATACAGACCGGACCAAGAGTTGCGACAACACATGCTAGA
CTCGAGCATGGGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGCCGAAGA
ACCTGACTGACAGAATTGGGGTTCGGCAATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGC
AAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCATCCGAAAAAATT
TGAAAAAATCCCGAACCACAAAAAGTTTCGAAAATCATGAAAAATAGAATAGGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGCCTCTCTAGCCGACGCAGGCTCGCCCGCCCGCTACCCGCTCGTTCCATCGGTTGGCTTAGG
Found at i:4171250 original size:26 final size:26
Alignment explanation
Indices: 4171220--4171272 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4171210 GTTGACTTAG
*
4171220 GCATACCGAGTTCGTTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
*
4171246 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
4171272 G
1 G
4171273 ACCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:4172159 original size:901 final size:896
Alignment explanation
Indices: 4170343--4176951 Score: 7939
Period size: 876 Copynumber: 7.4 Consensus size: 896
4170333 TGGCTTATGG
* ** * ** * **
4170343 ATACGGAGTTCATTCCCAATCTAAGATAAGATCGGACCAAGGGTTTTGGCAACACATGCTGCACT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* *
4170408 CGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGTCGGAGAAC
66 CGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA-CATCGCCGGAGCATC-TCGGAGAAC
* * * * *
4170473 CTGACTGACGGAATTGGGGTTCCGGCGATCGGGGTGGCCGGGAGGGGTGTGCGCACATGATGTGT
129 CTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GG-GGGGTGTGCGCACATGATGTGC
* *
4170538 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTTGAGAACTCACA
192 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
4170603 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TCGAAAT
257 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAAAT
* *
4170667 GGGGAAACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
4170732 TGCAAGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
386 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * * * * * * *
4170797 ATTTGAAAAAATCCCGAACCACAAAACGTTTCGAAAATCATGAAAATTTGGAAAGGAGTCGTCTT
451 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
4170862 GCCATGAAGCTTCACGTGAAGGCTTAAGGGTCCATTGTATAAATTTACAAGCCATAAAAATGGCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
4170927 TTGGTACTTAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
581 TTGGCAC--AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
4170992 CATCTCGCCTCTCTGGCCGACGCAGGGCTCGCCCGCCCGTCTGCCCGCTCGTTTCATCGGTTGGC
644 CATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGC
* * * * * **
4171057 TTAGGCATACGGAGTTCATTCCCTGTCTAAGATCTGACC-AGACCAAGAGTTACGATAGTAGGAT
709 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGCGGCAGTAGGAT
* * * * *
4171121 TGACAGCACGCAGA-GGGACGCCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCAGCT
773 CG-CAGCACACAGAGGGGA--CCCGGCCGATCCCCGGCTTGCGCATCCC-GCCCTCTGGCCGGCT
* * * *
4171185 GAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACCGAGTTCGTTCCCAGTCTAAGC
834 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * *
4171248 ATACGGAGTTCATTCCCAGTCTAAGACCGGATCGGACCGAGTGTTACGGCAGCATATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* *
4171313 CGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACTATCGTCGGAGCATCTCCGGAGAAC
66 CGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC-ATCGCCGGAGCATCT-CGGAGAAC
* *
4171378 CTGACCGGCGGCATTGGGGTTCCGACGATC-GGGCGGCCGGGGGGTGTGCGCACATGATGTGCGA
129 CTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* * *
4171442 TGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCAAGAACTCACACC
194 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
4171507 CCCTTAAAGAGCATTGGAGATTTTACAAGTTTGCTGCCAGTAGCCACTAAAGTGTCTTAAATGGG
259 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
*
4171572 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGC
324 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* *
4171637 ATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTTCTTCTGAAAAAATT
389 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
*
4171702 TTAAAAAATCTTGAACCGCAAAAAGTTT-GAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
454 TTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * * *
4171766 ATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATGAAAACGGCATTG
519 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
4171831 GCATGCAAAAATATGAAGATGTGCCTTAACCCACCTACCATCCAATCGATCCACGCCTTGCGCAT
584 GCA--CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
*
4171896 CCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCTTGTTTCGTCGGTTGGCTTA
647 CCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTA
* ** * *
4171961 GGCGTACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATTGAGGGTTGTGGCAGCAGGATACGC
712 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGTAGGAT-CGC
* * * * * *
4172026 AACACACAGAGTGGGACCCGGCTGATCCTCGACTTGCGCATCTCGACCTGCTGGCCGGCTGAGCA
776 AGCACACAGAG-GGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCT-CTGGCCGGCTGAGCA
*
4172091 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGC
839 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* *
4172149 ATACGGAGTTCATTCCCAGTCCAAGATCGTATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * *
4172214 CGAGAATGTGCTCGTGCAGCA-TTTCCTTTCGTCGGGG--CA---CC--ATCA--TCGGAGAACC
66 CGAGCATGTGCTGGTGCCGCATTTTTC-TTCGTCGGGGCACATCGCCGGAGCATCTCGGAGAACC
*
4172269 TGA-C--C-G-A------------CGATCGGGGGGGCCGGAGGGGGTGTGCTCACATGATGTGCG
130 TGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-G-GGGGGTGTGCGCACATGATGTGCG
*
4172317 ATGGGTGCTGGTCCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
193 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
4172382 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAATAGCCATTAAAGTGTCTAAAATGC
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
* *
4172447 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTTTGT
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTTGT
* ** * *
4172512 GCATACCATCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCCCGAAAAAA
387 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* *
4172577 TTTTAAAAAATCTCGAACCGCAGAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
452 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
4172642 CCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGCATGAATTTACAAGCCATAGAAATGGCAT
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
4172707 TGGCACATAGAAATATGAAGATGTACCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCAC
582 TGGCACA-A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** * * * * *
4172772 ATCCCATCTCTCTGGCCGGCGTAGTGCCCG-CC-CAC-CC-ACCCACTCGTTTCGTCTGTTGGCT
645 ATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCT
* * * * *
4172833 TAGGCATACGGAGTTCATTCTCAGTCTAAGAAT-AGACCGAACCGAGGGTGGCAGTAGCAGGATT
710 TAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGAACCGAGGGTTGCGGCAGTAGGA-T
* * * * * *
4172897 GGTAGCACACAGAGGGGGACCCGACCGATCCCCAGCTTGTGCATCCCGCCCTTCTGGCCGGTTGA
773 CGCAGCACACAGA-GGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC-TCTGGCCGGCTGA
* * * *
4172962 GCGCCCGCACGCTCGTTTCATCGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGC
836 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * * *
4173023 ATACGGAGTTCATTCCCAGTCCAAGATCAGACCGGACCAAGGGCTACGGCAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * *
4173088 CGGGAATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCAACG-C----CA-----GAGAACC
66 CGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA-CATCGCCGGAGCATCTCGGAGAACC
* * * * *
4173143 TGACCGGCGACATTGGGGTTCCGACGACCAGGGGGGCCGGGGGCATGTGCGCACATGATGTGCGA
130 TGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGG-GTGTGCGCACATGATGTGCGA
*
4173208 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCGAGAACTCACA-C
194 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
4173272 CCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGG
259 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
* * *
4173337 GACACTTTTTTCAAATGATCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCGC
324 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* *
4173402 ATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTATC-GAAAAAAT
389 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCTGAAAAAAT
* * * *
4173466 TTTAAAAAATCTCAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGC
453 TTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* **
4173531 CATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTTATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** * * *
4173596 GGCACATAGAAATATGAAGATGTGTTTAAACCCAGCTACCACCCTATCAATCCACGGCATGCGCA
583 GGCACA-A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
4173661 TCCCGCCTCTATGGCC-AGCGTAGTGCCGGCCCACCCGCCCACCCACCTGCCCGCTCGTTTCGTT
646 TCCCGCCTCTCTGGCCGA-CGTAGT----G----CCCGCCCGCCCGCCTGCCCGCTCGTTTCGTC
* ** * * *
4173725 GGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGATC-AGATCGAGGGTTGCAGCA
702 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGCGGCA
* ** * * * *
4173789 GTAGGATTGGCAGCATGCAAAGGATGACCCGGCCGATCCACGGCTTGCGCATCCCGCCTCTCTCG
766 GTAGGA-TCGCAGCACACAGAGG-GGACCCGGCCGATCCCCGGCTTGCGCATCCCGCC-CTCTGG
* * **
4173854 CCGACT-ATGCACCCGCACGCTCATTTCGT-GGTTGACTTAGGCATACGGAGTTCATTCGTAGTC
828 CCGGCTGA-GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
4173917 TAAGC
892 TAAGC
* * * * * *
4173922 ATACGAAGTTCATTGCCAGTCTAAGATCGGACCAGAACGAGGGTTGCGGCAGCACATGTTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
*
4173987 CTG-GCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGG--CA----C----CATCGTCGGAGAAC
66 C-GAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACATCGCCGGAGCATC-TCGGAGAAC
* * * * *
4174041 CTTACCGGCGGCATTGGGGTTTCGACGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTGTGA
129 CTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* * * * * *
4174106 AGGGTGCTGGTACTTGGCCCTAATATTGGCCCCATATCCCTCATCAAACCTCAAAAACTCGCACC
194 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
4174171 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGG
259 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
* * *
4174236 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTCGCTAAATTTTTTTGTGC
324 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
*
4174301 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-TCAAAAAAAT
389 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAAT
* * * * *
4174365 TTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
453 TTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
4174430 CATGAAACTTCACGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCCGTAAAAATGGCATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
4174495 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
583 GGCACA-A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * *
4174560 TCCCGTCTCTTTGGTCGGCATAGTGCCCGCCCGCCCG--T------TCGTTTCGACGGTTGGCTT
646 TCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * * *** * *
4174617 AGGCATACGAAGTTAACTCCCAGTCT--GAGCGGACC-AGAGCGAGGGTTACGATGGCAAGATCA
711 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGCGGCAGTAGGATC-
* * * * * *
4174679 GCAGCACACAGAGGGGACTCGGCCGATCCCCCGCTTGTGTATCCCGCCCCTCTAGCTGGCTGAGC
774 GCAGCACACAGAGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCG-CCCTCTGGCCGGCTGAGC
* * * * *
4174744 ACCCACACGTTTGTTTCGTGGGCTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGC
838 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * * * * *
4174803 ATACGAAGTTCTTTTCCAGTCTAAGATCGGAGT-GTATCGAGGGTTGCGGCTGCACATGCTAGAC
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * ** * *
4174867 TCGGGCATGTGTTGGTGTCGCATTTTTTTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAA
65 TCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA-CATCGCCGGAGCATC-TCGGAGAA
** ** * ** *
4174932 CCTGATTGAAGGCATTGGGGTTACGGCGATCGGGGGGGTTGGGGGGTGTGCGCACATGATGTACG
128 CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
4174997 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
193 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
4175062 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
*
4175127 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGTG
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
4175192 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCATTCCGAAAAAAT
388 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
* * * * *
4175257 TTTAAAAAATTTTGAACCGTAAAAAGTTTCAAAAATCA-GAAAAATAGAAAATGAGTCGTCTTGC
453 TTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
4175321 TATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
4175386 GGAACACAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGACTTGCGTA
583 GG--CACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * * *
4175451 TCTCGTCTCTCTAGCCGACGTAGTGCCCGCCCTCCCGCCCGCCCACTCGTTTCGCCGGTTGGCTT
646 TCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * * *
4175516 AGGCATACGAAGTTCATTCCCAGTCCAAGATCAGATCGGATCAAGGGTTACAGCAGTAGGATCGG
711 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGTAGGATC-G
* *
4175581 TAGCACACAGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
775 CAGCACACAGA-GGGGACCCGGCCGATCCCCGGCTTGCGCATCCCG-CCCTCTGGCCGGCTGAGC
* *
4175646 ACCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG-
838 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* *
4175704 AT-C-G-G---A---CC-G-----GA---G--C-GA---A-GGTTACGGCAGCACATGCTAGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* **
4175744 C-AGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGAA
66 CGA-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA-CATCGCCGGAGCATC-TCGGAGAA
* * * *
4175808 CCTGACCGGCGGCATTAGGGTTCCGGTGATCGGGGGGGTC-GGGGGTGTGCGCACATGATGTGCA
128 CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
4175872 ATGGGTGCTGGTACTTGGCCGTTATATTGGCCCCCTGTCCCTCATCAAACCTTGAGAACTCACAC
193 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
4175937 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
* *
4176002 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATG
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * **
4176067 CATACCAAAAAAAATACAAGGATCATGTCTACCAA-TGCTGGGGTGAAAACTCCTTC-GAAAAAA
388 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT-TTGGGGCCAAAACTCCTTCTGAAAAAA
* * *
4176130 TTTTTAAAAAATC-CTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
452 -TTTTAAAAAATCTC-GAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
4176194 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
4176259 ATAGCCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
580 ATTGGCAC--AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * * * * * *
4176324 GCATCCC-CTCTCTCTATCCGGCATAGTGCCCGCCCGCCCGCCCGCTCGATCGTTTCATCGGTTG
643 GCATCCCGC-CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTG
* * * * * ** *
4176388 GCTTAGGCATACGGAGTTCATTTCCACTCTAAGATCGGATCGAACCGAGGGTTGTGATAGTTGGA
707 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGTAGGA
** * * *
4176453 TCGACAGCACACAGAGGAGGACCTAGTCGATCCTCGGCTTGCGCATCCCGCCCTTCTGGCCGGTT
772 TCG-CAGCACACAGAGG-GGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC-TCTGGCCGGCT
* * * * * *
4176518 AAGCTCCCGCACGATCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAG--T---C
834 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* ** *
4176576 -TA---AG---ATT---AG-----G--C----CGGATCGAGGGTTGCAACAGCACATGCTGGGTT
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * *
4176620 GGGGCATGTGCTGGTGCCGCATTTTTCTTTG-CTGGGGTAGCATCACCGGAGCATCACCGGAGAA
66 CGAGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCA-CATCGCCGGAGCATC-TCGGAGAA
* * * * *
4176684 CTTGACCGGTGGCATTGGGGTTCCGGTGATTGGGGGGGCCGGGGGGTGTGCGCACATGGTGTGCG
128 CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
4176749 ATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCGAGAGCTCACAC
193 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * * *
4176814 CCCTTTAAAGAGCATTTAAGATTTTATAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
* * *
4176879 GGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCAAGTTTTTAGCTAAATTTTTTTGTG
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
4176944 CATGCCAA
388 CATGCCAA
4176952 CAAAGTTTCA
Statistics
Matches: 4984, Mismatches: 584, Indels: 300
0.85 0.10 0.05
Matches are distributed among these distances:
871 4 0.00
872 4 0.00
873 5 0.00
874 292 0.06
875 314 0.06
876 755 0.15
877 312 0.06
878 172 0.03
879 2 0.00
880 55 0.01
881 156 0.03
883 40 0.01
884 2 0.00
885 1 0.00
886 3 0.00
887 1 0.00
888 264 0.05
889 120 0.02
890 93 0.02
891 195 0.04
892 344 0.07
893 10 0.00
895 2 0.00
896 6 0.00
897 2 0.00
898 80 0.02
899 594 0.12
900 144 0.03
901 471 0.09
902 388 0.08
903 8 0.00
904 9 0.00
905 136 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
CGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACATCGCCGGAGCATCTCGGAGAACCT
GACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT
AAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
CCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGTAGGATCGCAGCAC
ACAGAGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCTCTGGCCGGCTGAGCACCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
Found at i:4173942 original size:26 final size:26
Alignment explanation
Indices: 4173894--4173946 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
4173884 GTTGACTTAG
* *
4173894 GCATACGGAGTTCATTCGTAGTCTAA
1 GCATACGAAGTTCATTCGCAGTCTAA
4173920 GCATACGAAGTTCATT-GCCAGTCTAA
1 GCATACGAAGTTCATTCG-CAGTCTAA
4173946 G
1 G
4173947 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCGCAGTCTAA
Found at i:4174812 original size:26 final size:26
Alignment explanation
Indices: 4174775--4174827 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4174765 GCTGACTTAC
*
4174775 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
4174801 GCATACGAAGTTCTTTTCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
4174827 G
1 G
4174828 ATCGGAGTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:4176493 original size:876 final size:878
Alignment explanation
Indices: 4172276--4176951 Score: 5480
Period size: 899 Copynumber: 5.3 Consensus size: 878
4172266 ACCTGACCGA
* *
4172276 CGATCGGGGGGGCCGGAGGGGGTGTGCTCACATGATGTGCGATGGGTGCTGGTCCTTGGCCCTTA
1 CGATCGGGGGGGCC-G-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
4172341 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
64 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * *
4172406 TACAGGTTTGCTGTCAATAGCCATTAAAGTGTCTAAAATGCGGACACTTTTTTCAAATGGTCACA
129 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACA
* * * **
4172471 AAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTTTGTGCATACCATCAAAAATACAAGGAT
194 AAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
* *
4172536 CACGTCTACCAAGTTTGGGGCCAAAACTCCTCCCGAAAAAATTTTAAAAAAT-CTCGAACCGCAG
258 CACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCGAAAAAATTTTAAAAAATCCT-GAACCGCAA
*
4172600 AAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
321 AAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * *
4172665 TAAGGGACCGTTGCATGAATTTACAAGCCATAGAAATGGCATTGGCACATAGAAATATGAAGATG
386 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATG
* * * *
4172730 TACCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCACATCCCATCTCTCTGGCCGGCGTA
451 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCCTCTCTCTGGCCGGCGTA
* * * * *
4172795 GT----GCCCGCCCACCCACCCACTCGTTTCGTCTGTTGGCTTAGGCATACGGAGTTCATTCTCA
516 GTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * ** * *
4172856 GTCTAAGAAT-AGACCGAACCGAGGG-TGGCAGTAGCAGGATTGGTAGCACACAGAGGGGGACCC
581 GTCTAAG-ATCAGATCGAACCGAGGGTTGG-A-TAGTAGGATCGACAGCACACAGAGGAGGACCT
* * * * * * * *
4172919 GACCGATCCCCAGCTTGTGCATCCCGCCCTTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATC
643 GGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTG
*
4172984 GGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCCAAGA
708 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAG-T-A-T-CC-G-----G-
* * * * *
4173049 TCAGACCGGACCAAGGGCTACGGCAGCACATGCTGGGCTCGGGAATGTGCTGGTGCTGCATTTTT
761 --AG-TC-G---AA-GGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCGCATTTTT
* * *
4173114 CTTCGTCGGGGCACCAACGC----CA-----GAGAACCTGACCGGCGACATTGGGGTTCCGA
817 CTTCGTCGGGGCACCATCGCGGAGCATCTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGG
* * *
4173167 CGACCAGGGGGGCCGGGGGCATGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
1 CGATCGGGGGGGCCGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
4173232 ATTGGCCCACTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAACAGCATTTGAGATTTT
65 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
4173296 ACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGATCACAA
130 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAA
* * *
4173361 AAACTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCGCATGCCAAGAAAAATACAAGGATCA
195 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
* *
4173426 CGTCTACCAAGTTTAGGGCCAAAACTCCTATCGAAAAAATTTTAAAAAAT-CTCAAACCGCAAAA
260 CGTCTACCAAGTTTGGGGCCAAAACTCCT-TCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAA
* * * *
4173490 AGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTA
323 AGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
**
4173555 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGTTATTGGCACATAGAAATATGAAGATGTG
388 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTG
** * * * * *
4173620 TTTAAACCCAGCTACCACCCTATCAATCCACGGCATGCGCATCCCGC-CTCTATGGCCAGCGTAG
453 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC-CTCTCTCTGGCCGGCGTAG
* * * *
4173684 TGCCGGCCCACCCGCCCACCCACCTGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATATGGAGTTC
517 T----GCCCGCCCG-CC-CGC-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
** * * * * * ** *
4173749 ATTCCCAGTCTAAGATTGGATC-AGATCGAGGGTTGCAGCAGTAGGATTGGCAGCATGCAAAGGA
574 ATTCCCAGTCTAAGATCAGATCGA-ACCGAGGGTTGGA-TAGTAGGATCGACAGCACACAGAGGA
* * * * * * *
4173813 TGACCCGGCCGATCCACGGCTTGCGCATCCCGCCTCTCTCGCCGACT-ATGCACCCGCACGCTCA
637 GGACCTGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA-GCACCCGCACGCTCG
**
4173877 TTTCGT-GGTTGACTTAGGCATACGGAGTTCATTCGTAGTCTAAGCATACGAAGTTCATTGCCAG
701 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG-AG-T-A-T-CC-G
* * *
4173941 TCTAAGATCGGACCAGAACGAGGGTTGCGGCAGCACATGTTGGGCTCTGGCATGTGTTGGTGCCG
760 -----GA---G-TC-G-A--A-GGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCG
*
4174006 CATTTTTCTTCGTCGGGGCACCAT--C---G----TCGGAGAACCTTACCGGCGGCATTGGGGTT
810 CATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCTCGGAGAACCTGACCGGCGGCATTGGGGTT
* *
4174062 TCGA
875 CCGG
* * * *
4174066 CGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTGTGAAGGGTGCTGGTACTTGGCCCTAATA
1 CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * * *
4174131 TTGGCCCCATATCCCTCATCAAACCTCAAAAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTA
66 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
4174196 CAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
131 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
4174261 ATCTTGTACACTTTGAGTTTTTCGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
196 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
* ** *
4174326 GTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAG
261 GTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAG
* * *
4174391 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTGAAG
325 TTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
*
4174456 GGACCATTGTATGAATTTACAAGCCGTAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCC
390 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCC
* * * *
4174521 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGTCGGCATAGT--
455 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCCTCTCTCTGGCCGGCGTAGTGC
* * * * *
4174584 ------GCCCGCCCGCCCGTTCGTTTCGACGGTTGGCTTAGGCATACGAAGTTAACTCCCAGTCT
520 CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * * *
4174643 --GAGCGGA-CCAGAGCGAGGGTTACGATGGCAAGATC-AGCAGCACACAGAGG-GGA-CTCGGC
585 AAGATCAGATCGA-ACCGAGGGTT-GGATAGTAGGATCGA-CAGCACACAGAGGAGGACCT-GGC
* * * * * * * * *
4174702 CGATCCCCCGCTTGTGTATCCCGCCCCTCTAGCTGGCTGAGCACCCACACGTTTGTTTCGTGGGC
646 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
*
4174767 TGACTTACGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCTTTTCCAGTCTAAGATCG
711 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG-AG------T--A-TC------CG
* * * * * * *
4174832 GAGTGTATCGAGGGTTGCGGCTGCACATGCTAGACTCGGGCATGTGTTGGTGTCGCATTTTTTTT
760 GA--G--TCGAAGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCGCATTTTTCTT
** * ** ** *
4174897 CACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGATTGAAGGCATTGGGGTTACGG
820 CGTCGGGGCACCATCG-CGGAGCATC-TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGG
** *
4174958 CGATCGGGGGGGTTGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATA
1 CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
4175023 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
66 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
4175088 CAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
131 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
4175153 ATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
196 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
* ** *
4175218 GTCTACCAAGTTTGGGGCCAAAACTCATTCCGAAAAAATTTTAAAAAATTTTGAACCGTAAAAAG
261 GTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAG
* * *
4175283 TTTCAAAAATCA-GAAAAATAGAAAATGAGTCGTCTTGCTATGAAACTTCACGTGAAGGCTTAAG
325 TTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
4175347 GGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGAACACAGAAATATGAAGATGTGCC
390 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCC
* * * * * * *
4175412 TAAACCCACCTATCACCCTATCGATCCACGACTTGCGTATCTCGTCTCTCTAGCCGACGTAGTGC
455 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCCTCTCTCTGGCCGGCGTAGTGC
* * * * *
4175477 CCGCCCTCCCGCCCGCCCACTCGTTTCGCCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCC
520 CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * ** * ** *
4175542 AAGATCAGATCGGATCAAGGGTTACAGCAGTAGGATCGGTAGCACACAGAGGGGGACCTGGCCGA
585 AAGATCAGATCGAACCGAGGGTTGGA-TAGTAGGATCGACAGCACACAGAGGAGGACCTGGCCGA
*
4175607 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGAGTTGA
649 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGA
* *
4175672 CTTAGGCATACGAAGTTCATTCCCAGTCTAAG-AT-CG-G-A-CCGGAG-CGAAGGTTACGGCAG
714 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTATCCGGAGTCGAAGGTTGCGGCAG
* * **
4175731 CACATGCTAGGCTCAGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGC
779 CACATGCTGGGCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGC
*
4175796 ATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTCCGG
842 ATC-TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGG
* * * *
4175834 TGATCGGGGGGGTC-GGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCGTTATA
1 CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
4175898 TTGGCCCCCTGTCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
66 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
4175963 CAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
131 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * *
4176028 ATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATACCAAAAAAAATACAAGGATCAT
196 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
* ** *
4176093 GTCTACCAA-TGCTGGGGTGAAAACTCCTTCGAAAAAATTTTTAAAAAATCCTGAACCACAAAAA
261 GTCTACCAAGT-TTGGGGCCAAAACTCCTTCGAAAAAA-TTTTAAAAAATCCTGAACCGCAAAAA
* *
4176157 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
324 GTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * *
4176222 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATAGCCACGTAGAAATATGAAGATGTGC
389 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGC
** *
4176287 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCCTCTCTCTATCCGGCATAGTG
454 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCCTCTCTCTGGCCGGCGTAGTG
* * * * *
4176352 CCCGCCCGCCCGCCCGCTCGATCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTTCCACTC
519 CCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * *
4176417 TAAGATCGGATCGAACCGAGGGTTGTGATAGTTGGATCGACAGCACACAGAGGAGGACCTAGTCG
584 TAAGATCAGATCGAACCGAGGGTTG-GATAGTAGGATCGACAGCACACAGAGGAGGACCTGGCCG
* * * * * * *
4176482 ATCCTCGGCTTGCGCATCCCGCCCTTCTGGCCGGTTAAGCTCCCGCACGATCATTTCGTGGGTTG
648 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTG
* * * **
4176547 ACTTAGGCATACAGAGTTCATTCCTAGTCTAAG-ATTA-G-G---CCGGA-TCGAGGGTTGCAAC
713 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA-TACGAGTATCCGGAGTCGAAGGTTGCGGC
* * * * * *
4176605 AGCACATGCTGGGTTGGGGCATGTGCTGGTGCCGCATTTTTCTTTG-CTGGGGTAGCATCACCGG
777 AGCACATGCTGGGCT-CGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATC-GCGG
* * *
4176669 AGCATCACCGGAGAACTTGACCGGTGGCATTGGGGTTCCGG
839 AGCATC-TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGG
* * * *
4176710 TGATTGGGGGGGCCGGGGGGTGTGCGCACATGGTGTGCGATGGGTGCTGGTACTTGGCCCTTCTA
1 CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
4176775 TTGGCCCCCTATCCCTCATCAAACCTCGAGAGCTCACACCCCTTTAAAGAGCATTTAAGATTTTA
66 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * *
4176840 TAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
131 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
4176905 ATATTGTACACTTCAAGTTTTTAGCTAAATTTTTTTGTGCATGCCAA
196 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
4176952 CAAAGTTTCA
Statistics
Matches: 3300, Mismatches: 396, Indels: 192
0.85 0.10 0.05
Matches are distributed among these distances:
874 9 0.00
875 294 0.09
876 585 0.18
877 212 0.06
879 2 0.00
880 53 0.02
881 137 0.04
882 1 0.00
883 44 0.01
884 4 0.00
885 4 0.00
886 9 0.00
887 6 0.00
888 265 0.08
889 118 0.04
890 81 0.02
891 179 0.05
892 337 0.10
896 5 0.00
897 4 0.00
898 79 0.02
899 601 0.18
900 139 0.04
901 35 0.01
902 95 0.03
903 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (878 bp):
CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
GTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGT
TTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCT
AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCCTCTCTCTGGCCGGCGTAGTGCC
CGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
AGATCAGATCGAACCGAGGGTTGGATAGTAGGATCGACAGCACACAGAGGAGGACCTGGCCGATC
CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACT
TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTATCCGGAGTCGAAGGTTGCGGCAGCA
CATGCTGGGCTCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCT
CGGAGAACCTGACCGGCGGCATTGGGGTTCCGG
Found at i:4177373 original size:26 final size:26
Alignment explanation
Indices: 4177343--4177395 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4177333 GTTGACTTAG
* *
4177343 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
4177369 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4177395 G
1 G
4177396 ATTGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4178663 original size:879 final size:887
Alignment explanation
Indices: 4176953--4179814 Score: 3572
Period size: 879 Copynumber: 3.2 Consensus size: 887
4176943 GCATGCCAAC
** ** *
4176953 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTATCTTGCCATGAAACTTCACGTGGAGGCT
1 AAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * *
4177018 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGGATTGGCACT-CAAAAATATGAAG-T
66 TAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCA-TGCAGAAATATGAAGAT
* * * * *
4177081 CGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTACGCATTCCGTCTCTCTGGCCGGTG
130 -GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCGTCCCGTCTCTCTGGCCGGCG
* * * * *
4177146 CAGTG----CCCGCCCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCC
194 TAGTGCCCCCCCGCCCGCCCACCCGCTCATTTCGTCAGTTGGCTTAAGCATACGGAGTTCATTCC
* * * * * * * * *
4177203 CAGTCTAAGATCGGACCGGACCGAGGGTCGCGGCAACAGGATCGGCAGCACACAGATGGGGACCC
259 CAGTCTAAGATCGCACCAGACCGAGGGTTGCAGCAGCAAGATCGACAGCACAAAGAGGGGGACCC
* * * * ** * ** * *
4177268 -GATCGATCCCAACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACGTTCGTTTCCTG
324 GGCT-GATCCCGACTTGCACATCCCGCACCTCTGGCCAACTAAGCACCCGCACGCTCGTTTCGTG
* * * * *
4177332 GGTTGACTTAGGCATACGGAGTTCCTTCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGA
388 GGTTGACTTAGGCATAAGGAGTTCATTCCCAG-CT-A-CATA-TGAG-T-ATTCC-AGAC-CAGA
* * * *
4177397 TTGGATCAG-ACTGAGGGTTGCGACAGCACATGCTTGGCGT-GAGCATGTGCTGGTGCCGCATTT
445 --GAACCAGAAC--AGGGTTACGGCAGCACATGC-TGGC-TCGAGCATGTGCTGGTGCCGCATTT
** * * *
4177460 TTCTTCCCCGGGGCACCATGGTCGGAGTATCGTCGTAGAACCTGACCGACGGCATTGGGGTTCCG
504 TTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA-CG-CGGCATTGGGGTTCCG
* * * *
4177525 ACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGCGCGATGGGTGCTAGTACTTGGCCCTTAT
567 A-GATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTAT
* *
4177590 ATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
631 ATTGGCCCCTTCTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
4177654 ACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAATTTTTTGAAATGGTCACAA
696 ACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * *
4177719 AATCTTGTACACTCCAAGTTTTTAGCTGAATTTTCTTGTGCGTGCCAACAAAAATACAAGGATCA
761 AATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* *
4177784 CGTCTACCAAGTTTGGGGCCCAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAA
826 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAA
*
4177846 AAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCTATGAAACTTCACGTGAAGGCT
1 AAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
*
4177911 TAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCAATGGCATGCAGAAATATGAAGATG
66 TAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * *
4177976 TGCCT-AACCCACCTACCACCCTATCAATCCACGGCTTACGCGTCCCGTCTCTCTGGCCGACGTA
131 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCGTCCCGTCTCTCTGGCCGGCGTA
4178040 GTGCCCACCCGCTTGCCCGCCCACCCGCTCATTTCGTCAGTTGGCTTAAGCATACGGAGTTCATT
196 GTGCCC-CCC-C--GCCCGCCCACCCGCTCATTTCGTCAGTTGGCTTAAGCATACGGAGTTCATT
* * * * * * **
4178105 CCCAGTCTAAGATCGCA-CAGGACCGTGGTTTGCAGTAGCAGGATTGGCAGCACGTAGAGGGGGA
257 CCCAGTCTAAGATCGCACCA-GACCGAGGGTTGCAGCAGCAAGATCGACAGCACAAAGAGGGGGA
* * * * * * *
4178169 CCC-GATCGATCCCTGGCTTGCGCATCCCGCACCTTTGGCCAACTAAGCGCCTGCATGCTCGTTT
321 CCCGGCT-GATCCC-GACTTGCACATCCCGCACCTCTGGCCAACTAAGCACCCGCACGCTCGTTT
* *
4178233 CGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAG-T-C-T-T-AG-A-T-CAGACC-G-G-AC
384 CGTGGGTTGACTTAGGCATAAGGAGTTCATTCCCAGCTACATATGAGTATTCCAGACCAGAGAAC
* * *
4178287 C-G-A-A-GGTTACGGTAGCACATGCTGGTCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTC
449 CAGAACAGGGTTACGGCAGCACATGCTGG-CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATC
**
4178348 GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGATCGGCGGCATTGGGGTTCCGATGATCGGG
513 GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA-C-GCGGCATTGGGGTTCCGA-GATCGGG
*
4178413 GGGGCCAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCA
575 GGGGCCAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCC
*
4178478 TTCTCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAACAGCATTTGAGATTTTACAGGTTTG
640 TTCTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
4178542 CTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCTAGTGGTCACAAAATCTTGTA
705 CTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
** *
4178607 CACTTCGCGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAATAA-ACAAGGATCACGTCTACC
770 CACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA-AATACAAGGATCACGTCTACC
* ** * *
4178671 AAGTTTGGGGCCAAAACTTCTTCCAAAAAAATTTTAAAAAATCCTGAACAGTAA
834 AAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAA
4178725 AAAGTTTTGAAAATCGTG-AAAATAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
1 AAAGTTTTGAAAATCGTGAAAAAT-AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
*
4178789 TTAAGGGACCATTGTACGAATTTACAGGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
65 TTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* *
4178854 GTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCGTCCCGTCTCTCTGGTCGGCGT
130 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCGTCCCGTCTCTCTGGCCGGCGT
* * * * * *
4178919 AGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCC
195 AGTGCCCCCCCGCCCGCCCACCCGCTCATTTCGTCAGTTGGCTTAAGCATACGGAGTTCATTCCC
* **
4178984 AGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAAGATCGACAGCACAAAGAGGGGGACCCG
260 AGTCTAAGATCGCACCAGACCGAGGGTTGCAGCAGCAAGATCGACAGCACAAAGAGGGGGACCCG
* ** *
4179049 GCTGATCCCGACTTGCACATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGG
325 GCTGATCCCGACTTGCACATCCCGCACCTCTGGCCAACTAAGCACCCGCACGCTCGTTTCGTGGG
*
4179114 TTGACTTAGGCATAAGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCCAAGATC
390 TTGACTTAGGCATAAGGAGTTCATTCCCAG-CT-A-CATAT-GAG-T-ATT-CCAGACC-AGA--
* * * * *
4179179 GAACCAGAACGAGGGTTACGGCAGCAGATGCTGGGCTCGGGCATGTGCTAGTGTCGTATTTTTCT
445 GAACCAGAAC-AGGGTTACGGCAGCACATGCT-GGCTCGAGCATGTGCTGGTGCCGCATTTTTCT
4179244 TCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC-CGG---T--GG---C---ATCG
508 TCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACGCGGCATTGGGGTTCCGAGATCG
* * * *
4179297 GGGCGGCCAAGGGGGGTGTGCGCACATGATTTGTGTTGGGTGCTGGTACTTGGCCCTTATATTGG
573 GGGGGGCC-A-GGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGG
* *
4179362 CCCCCTAC-CCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
636 -CCCCTTCTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
4179426 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTGTTCAAATGGTCACAAAATC
700 GTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * *
4179491 TTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGCGCATGCCAAAAAAAATAGAAGGATCACGTG
765 TTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * ** **
4179556 TCCCAAGTTTGGGGCCAAAAATCCTT-TCGAAAAAATTTTAAAAAATATCGAACCACAA
830 TACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCCCGAACCGTAA
* ** *
4179614 AAAATTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCGTGCCATGAAACTTCACGTGAAGGCT
1 AAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
*
4179679 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
66 TAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* *
4179744 TGCCTAAACCCACCTACCACCCTACCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
131 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCGTCCCGTCTCTCTGGCCGGCGTA
4179809 GTGCCC
196 GTGCCC
4179815 GCCCACTCAT
Statistics
Matches: 1731, Mismatches: 179, Indels: 122
0.85 0.09 0.06
Matches are distributed among these distances:
875 74 0.04
876 105 0.06
877 5 0.00
878 10 0.01
879 479 0.28
880 97 0.06
881 1 0.00
882 1 0.00
883 2 0.00
884 4 0.00
885 1 0.00
886 11 0.01
887 2 0.00
888 80 0.05
889 380 0.22
890 14 0.01
891 1 0.00
892 58 0.03
893 124 0.07
894 1 0.00
895 2 0.00
896 5 0.00
897 3 0.00
898 5 0.00
899 1 0.00
900 8 0.00
901 80 0.05
902 2 0.00
903 2 0.00
904 101 0.06
905 72 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (887 bp):
AAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
TAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCGTCCCGTCTCTCTGGCCGGCGTA
GTGCCCCCCCGCCCGCCCACCCGCTCATTTCGTCAGTTGGCTTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCGCACCAGACCGAGGGTTGCAGCAGCAAGATCGACAGCACAAAGAGGGGGACCCGG
CTGATCCCGACTTGCACATCCCGCACCTCTGGCCAACTAAGCACCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATAAGGAGTTCATTCCCAGCTACATATGAGTATTCCAGACCAGAGAACCAGAACA
GGGTTACGGCAGCACATGCTGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACC
ATCGTCGGAGCATCGTCGGAGAACCTGACGCGGCATTGGGGTTCCGAGATCGGGGGGGCCAGGGG
GTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCTTCTCCCTCAT
CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGC
CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTT
TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
AAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAA
Found at i:4180839 original size:26 final size:26
Alignment explanation
Indices: 4180803--4180855 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4180793 GTTGACTTAG
* *
4180803 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAACTCCCAGTCTAA
*
4180829 GCATACAGAGTTCACTCCCAGTCTAA
1 GCATACAGAGTTAACTCCCAGTCTAA
4180855 G
1 G
4180856 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTAACTCCCAGTCTAA
Found at i:4182613 original size:26 final size:26
Alignment explanation
Indices: 4182583--4182632 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
4182573 GTTGACTTAG
* *
4182583 GCATACGGAGTTCATTCCCAGTCTGA
1 GCATACAGAGATCATTCCCAGTCTGA
4182609 GCATACAGAGATCATTCCCAGTCT
1 GCATACAGAGATCATTCCCAGTCT
4182633 AAGATCGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACAGAGATCATTCCCAGTCTGA
Done.