Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 31 of 129
Found at i:4183536 original size:26 final size:26
Alignment explanation
Indices: 4183485--4183537 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
4183475 GTTGACTTAG
* * *
4183485 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACAGAGTTCATTCACAGACTAA
*
4183511 GCATACAGAGTTCATTCCCAGACTAA
1 GCATACAGAGTTCATTCACAGACTAA
4183537 G
1 G
4183538 ATCGGAGCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGACTAA
Found at i:4183817 original size:902 final size:901
Alignment explanation
Indices: 4179966--4196379 Score: 17396
Period size: 902 Copynumber: 18.4 Consensus size: 901
4179956 CTGGCCGACT
* * * * *
4179966 GAGGGTTGCGGCAGCACACGCTGGGCTCGGGTATTTGTTGGTGCCGCATTTTTTTTTGTCGGGGC
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * * *
4180031 ACCATCGTCGGACCATCGTCGGAGAACCTGACAGGCGGCATTGGGGTTCTGGCGATCGGGGGGTC
66 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC
* **
4180096 GGGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTCATACTTGGCCCTTATATTGG-CCCCTAT
131 CGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
4180160 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTC
195 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
4180225 CAGTAGCAATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
260 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
4180290 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTT
325 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * *
4180355 TGGGGCCAAAACTCCTCCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTG
390 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCG
* *
4180420 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGAACCATTGTAT
455 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
4180485 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGTCTAAACCCACCTA
520 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
4180550 CCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCACCCGC
585 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-CCCGC
* * * ** *
4180615 CCGCCCGTTCGTTTCATCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATTGGACCA
649 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * ** *
4180680 GACTGAGGGTTGCGGTAGCAGGATTGGTAGCACATAGAGGGGGACCCAACCGATCCCCGGCTTGC
714 GACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* *
4180745 GTATCCCTCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
779 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * ** *
4180810 GAGTTAATTCCCAGTCTAAGCATACAGAGTTCACTCCCAGTCTAAGATCGGACTAGATC
844 GAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * * * *
4180869 GAAGGTTGCAGCAGCACATGCTTGGCTCGGGCATGTGTTGGTGCTGCATTTTTCTTTGTCGGGGC
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * *
4180934 ACCATCACCAGAGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGCTT-CAACGAT-TGGGGGG
66 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGG-TTCCGACGATCGGGGGGG
* *
4180997 CCGGGGGGTGTGCGCACATGGTGCGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
130 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
4181062 CCCTTATCAAACCTCGAGAACTCACACCCCCGTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
195 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * *
4181127 CAGTAGCGATTAAAGTGTTTGAAACGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACA
260 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
** * * * * *
4181192 TCGAGTTTTTAGCTGAATTTTTTTGTGCACACCAATAAAAAAAAAAGGATCACGTCTTCTAAGTT
325 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * *
4181257 TGGGACCAAAACTCATTTCGAAAAAATTTTAAAAAATCCCA-AACCACAAAAAGTTTCAAAAATC
390 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CCAGAACCGCAAAAAGTTTCAAAAATC
* * *
4181321 ATGAAAAATAGAAAACGAGTCGTCTTGTCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
454 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
4181386 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
519 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
4181451 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG---CCCG-
584 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGC
* * * * * *
4181512 CC-CAC-AT-GTTTCGTCGGTTGGCTTAGGCATACGGTGTTCATTACCAGTCTAAGATCTGACCA
649 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* ** * * * ** *
4181574 GA-TCGAGGGTTGCAGCAATAGGATTGACAGAACATAGAGGGGGACCCGACCGATCCCTGGCTTG
714 GACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * * ** * *
4181638 CGCATCCTGCCCCTTTGGCCGACTGAGCAATCGCACGCTCATTTTGTGGGTTGACTTAGGCATAC
778 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
4181703 GGAGTTCATTCCCAGTCT----A-A--A----A-T--C-G-----GAT---A--GGACC
843 GGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* *
4181737 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTTTTCGTCGGGGC
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGC
* * *
4181802 ACCATCGTCAGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC
66 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC
* * *
4181867 CAGGGGGGTGTGCGCACATGATGTGTGATGCGTGCTGGTACTTGGCCTTTATATTGGCCCCCTAT
131 C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
4181932 CTCTCATCAAACCTCGAGAACTCACACCCCCTTAAGGAGCATTTGA-ATTTTACAGGTTTGCTGT
195 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
4181996 CAGTAGCTATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
260 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
4182061 TCTAGCTATTAAAGTTTTTAGCTGAATTTTTTTGTGCGTGCCAACAAAAATACAAGGATCATGTC
325 TC--G-------AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * * * *
4182126 TACCAAGTTTGGGG-AAAAACTGCTTCCGAAAAAATTTGAAAAAAATCCCGAACCGTAAAAATTT
381 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT-TAAAAAATCCAGAACCGCAAAAAGTT
** * * *
4182190 TTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTGGCCATGAAACTTCACGTGAAGGCTTAAAGA
445 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
*
4182255 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTA
510 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* * * *
4182320 AACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCCGGTCGGCATAGTGCCC
575 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
* ** * * * * *
4182385 GCCTACCTACCTGCCTGCTCGTTTCGTCTGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCGAA
640 GCC-CCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
4182450 GATCGGACCAGACTGAGAGTTGTGGCAGCAAGATCGGCAGCACACAGAGGGGGACCCGACCGATC
704 GATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC
* * * * * * *
4182515 CCCGGCTTACGCTTTCTGCCCCACTGGCCGGCTGAGCACCCGCACACTCGTTTCATGGGTTGACT
769 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACT
* * *
4182580 TAGGCATACGGAGTTCATTCCCAGTCTGAGCATACAGAGATCATTCCCAGTCTAAGATCGGACTG
834 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCG
4182645 GACC
898 GACC
* * **
4182649 GAGGGTTGCGGCAGCACATGCTGGACTCGGGCATGTGTTGGTGCCACATTTTTCTTCACCGGGGC
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * * * *
4182714 ACCATCACTGGAGCATTGTCGAAGAACCTAACCGGCGGCATAT-GGGTTCCGACAATTGGGGGGG
66 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCAT-TGGGGTTCCGACGATCGGGGGGG
* *
4182778 CCGGGGGGTGTGCGCACATGATGTGCGATCGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTAT
130 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
4182843 CCCTCATCAAACCTCGAGAGCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
195 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
4182908 CAGTAGCCATTAAAGTGTCTGAATTGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
260 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * *
4182973 TCGAGTTTTTAGCTGAATTTTTTTGTGTACGCCAACAAAAATACAAGGATCACATCTCCCAAGGT
325 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * *
4183038 TGGGACCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGCTTCAAAAATCG
390 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCG
4183103 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
455 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
4183168 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATTTGAAGATGTGCTTAAACCCACCTA
520 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* *
4183233 CCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCAC
585 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-CCCGC
* * * *
4183298 CCACCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATT-CCAATCTAAGATCAGACCG
649 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * ** **
4183362 GACAGAGGGTTGCGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCTAACCGATCCCCAACTTGC
714 GACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* * * * *
4183427 GCATCCCACCCCTCTGGCCGGCTTAGCACCCGCACACTTGTTTTGTGGGTTGACTTAGGCATACG
779 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
** * *
4183492 GAGTTCATTCATAGTCTAAGCATACAGAGTTCATTCCCAGACTAAGATCGGAGCGGACC
844 GAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* *
4183551 GAGGGTTGCGGCAGCACATGCTTGGCTCGGGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGC
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * *
4183616 ACCATCCCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGCTCCGACGATCGGGGGGGC
66 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC
*
4183681 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATC
131 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* **
4183746 CCTCATCAAAGCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTT
196 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
4183811 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
261 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
4183876 CGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATAAAAGGATCATGTCTACCGAGTTT
326 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * *
4183941 GGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCAT
391 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCGT
* * *
4184006 GAAAAATAGAAAACGAGTCGTCTTTCCCTGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATG
456 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
4184071 AATTTACAAGCCATAAAAATGGCATTGGCATC-CAAAAATATGAAGATGTGCCGAAACCCACCTA
521 AATTTACAAGCCATAAAAATGGCATTGGCA-CGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * ** *
4184135 CTACTCTATCGATCCACGGCTTACATATCCCGTCTCTCTGGCCTGCGTAGTGCCCGCCCGCCCGC
585 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-CCCGC
** * * * * * * *
4184200 TTGCCCACTCGTTTCGCCGGTTGGCTTAGGCATATGGTGTTCATTACCAGTCTAAGATCGGACCA
649 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * * * * * * *
4184265 GACCGAGGGTTCCGGCAGTAGGATCGGCAGCATGCAGAGGTGGACCCGATCGATCCCTGACATGC
714 GACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* * * ** * *
4184330 GCATCCCACCCCTCTGGCCGACTGAGCACCCGCACTCTTATTTTGTGGGTTGACTTAGGCATACA
779 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * * * **
4184395 GAGTTTATTCCCAATCTAAGCATACG-GTATTAGTGCCAAATTTTCTTCG-TCGG---GGCACC
844 GAGTTCATTCCCAGTCTAAGCATACGAGT-TCA-TTCC-CA--GTCTAAGATCGGACCGG-ACC
** * ** ** * * * *****
4184454 -ATCG-T-CGG-AGCATCGTCGAAGAACCTGACCGGCAACAT-TG-GGGTTCCGACGA-TCGGGG
1 GAGGGTTGCGGCAGCA-CAT-GCTG-GGCT---CGG--GCATGTGTTGGTGCCG-C-ATTTTTCT
** * *** * * * ** * ** * *
4184512 GGGCCGGGG-AGGTGTACGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATTTTAGCCC
56 TCGTCGGGGCA-CCAT-CGC-C--G--GAGC-AT---CGTCGG-A---GAACCTGA---CCGGCG
* ***** ** * ** **** ****** * ** * *
4184576 CCTATTCCTCATCAAAC-CTCAAGAACTCACACCCCCT-TAAAGAGCATTTGACATTTTAC-A-G
103 GC-ATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGGTGT---GCGCACATG--A-TGTGCGATG
* * * * * ** * ** **
4184637 GTTTGCTGTCAGTAGCCATTAAAGTG-TCTGAAATGGGGACACT-T---TTTTCAAATGGTCGCA
160 G-GTGCTG---GTA--C-TT---G-GCCCTTATATTGGCCCCCTATCCCTCATCAAA-CCTCG--
* * * * ** * * * **
4184697 AAAAATTGTACACTTCTAGCCATT-AA-AGTTTTTAGCTGAATTTT----TTTATGGATGCCAAC
211 -AGAACT-CACAC--C---CCCTTAAAGAGCATTT-G-AG-ATTTTACAGGTT-T-GCTGCCAGT
** * * * ** * * * *
4184756 A-TAAATACAAGGATCACGTCT-ACCCAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT-TTTAAA
264 AGCCATTA-AA-G-T---GTCTGA---A--ATGGGG---ACACTTTTTTC----AAATGGTCACA
* ** * * ****** * **
4184818 AAATCCTG-A-ACTGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
311 AAATCTTGTACACT-T--CGAGTTTT---TAGC-TG---AAT---TTTTTTGT-G-CATGCCAAC
** * * * ** *** * * **
4184881 AAACTTCACGTGAAGGCTTAAG-GGACCATTGTATGAATTTACAAGCTATAAAAATGGAATTGGC
361 AAAAAT-AC---AAGGATCACGTCTACCA----A-G--TTT-GGGGC--CAAAACT--CCTT--C
* * * * ** ** ** *** * **** * *
4184945 ACGTAAAAATATGAAGATGTGCCTA-AACC-C---ACCTACCACCGTATCGATCCACGGCTTGCG
408 -CGAAAAAATTTTAAAAAAT-CC-AGAACCGCAAAAAGTTTCA-AAAATCG-T-GAAAAATAG-A
* * ** * ** ** * ** * ** * **
4185005 CATCCCGTC-TCTCTGGTCGATGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGATTGGATTA
466 AAACGAGTCGTCT-T-G-CCATG-A--AACTTCACG--TG-AAG-GC-TTAAG-GGA--CCATT-
* * * ** * * * * *** ** *
4185069 GGCATACAGAGTT-CATTCCCAGTCTAAGATCGG-A-CGGGATCG-AGGGTTGCGACAGCAGGAT
516 -GTAT-GA-ATTTACA-AGCCA-T-AAAAAT-GGCATTGGCA-CGCAGAAATATGA-AG-ATG--
* * * * *** * * * * * ** * * * *
4185130 TGGC-AGCACGCA-GTGGGGGACCCGACCGATCCCCGACTTGCACATCCCACCCCTATAGTC-G-
569 TGCCTA-AACCCACCT--ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * * * * *
4185191 GT--T----G---ACCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGTATACAGAGTTCATTCC
631 GTAGTGCCCGCCCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * * * *
4185247 CAGTCCAAG--C-GTA-CGGAGTTCA---TT-C-CCAGTCTAAGATCAGATCGGCTCG-AG-GGT
696 CAGTCTAAGATCAG-ACCGGA-CTGAGGGTTGCGGCAG-C-AGGATC-G-GCAGCACGCAGAGG-
* * * * * * ** *
4185301 TGCGA-CAGCACATG-TCTCTCTGGC-CG-GCAT--AGTGCC-C--GCC--C---G--CCCGCCC
754 -GGGACCCG-AC-CGATC-C-CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
* * ** * *
4185350 GTTCCTTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAG-C----C-TA--AG---A-T-
814 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTC
*
4185402 -C-G-----GA-C-TA---GACC
879 CCAGTCTAAGATCGGACCGGACC
* * * * * *
4185413 GA-GGTT-----------TGTTGGGCTCAGGCATGTGATGATGCCGTATTTTTCTTCGTTGGGGC
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * *
4185466 ACCATCGTCAGG-GCATCG-CTGGAAAACCTGACCGGCGGCATTGGCGTTCCGATGATCGGGGGG
66 ACCATCG-CCGGAGCATCGTC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG
* *
4185529 GCCGAGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCGTTATATTGGCCCCC
129 GCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
4185594 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
192 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
4185659 TGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTGCAAATGGTCACAAAATCTTGTAC
257 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
4185724 ACTTCGAGTTTTTGGCTGAA-TTTTTTGTGCTTGCCAACAAAAATGCAAGGATCACGTCTACCAA
322 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * **
4185788 GTTTGGGGCCCAAACT-CTTCCAAAAAAAGTTTAAAAAATCTC-GAACCGTGAAAAGTTTCAAAA
387 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CAGAACCGCAAAAAGTTTCAAAA
* *
4185851 ATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTTAAGGCTTAAGGGACCATT
451 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* **
4185916 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATCCGCCTAAACCCA
516 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * *
4185981 CCTACCATCCAATCGATCCACGGCTTGCGTATCCCGTTTCTCTGGCCGGTGTAGTGCCCG---CC
581 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCC
** * * *
4186043 CGCCTACCCGCTCGTTTCATCGGTTGGATTAGGCATACGGAGTTCATTCCCTGTCTAAGATCAGA
646 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * * * *
4186108 TCGGACCGAGGGTTGCGGTC-GTAGGATTGGCAGCACGCAAAAGGGGACCCAACCGATCCCTGAC
711 CCGGACTGAGGGTTGCGG-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* * * *
4186172 TTGCACACCCCGCCCCTCTGGCCGGTTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCA
775 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
** * * *
4186237 TATAGAGCTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACC
840 TACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* *
4186300 GAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCGTC---G-
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * *
4186361 ---AT-----GAGCATCGCCGGAGAACTTGACCGACGGCATTGGGGTTCCGATGAAT-GGGGGGG
66 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG-ATCGGGGGGG
* * **
4186417 TCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGATCTTATATTGGCCCCCTA
130 -CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
4186482 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
194 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
4186547 TCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCGTGTACAC
259 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
4186612 TTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAAGATCACGTCTACCAAGT
324 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * * *
4186677 TTGGGGCCAAAAATCTTTCCAAAAAAATTTTTAAAAATCCCGAACCGTAAAAAGGTTTCAAAAAT
389 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGCAAAAA-GTTTCAAAAAT
*
4186742 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
453 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* ** *
4186807 ACGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATATGCCTAAACCCACC
518 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* *
4186872 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGT-----------G
583 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCG
* * * * *
4186926 CCCGCCCACTCGTTCCGTCGGTTGGCTTAAGCCTA-GGAGTTCATTCCTAGTCTAAGATCAGACC
648 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * * * *
4186990 GGACCGAGGGCTGTGGCAGCATGATTGACAGCACGCAGAGGGGGACCCGACCGATCCCTGGCGTG
713 GGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * **
4187055 CACATCCCGCCCCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGAAATAC
778 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * *
4187120 GAACTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACC
843 GGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGGACC
** * *
4187180 GAGGGTTGCGATAGCACATTCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTTGGGGC
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGC
*
4187245 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGTCGATCGGGGGGGC
66 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC
* * *
4187310 CGGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTAT
131 C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
4187375 CCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGC
195 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
4187440 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATTTTGTACACT
260 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * *
4187505 TCGAGTTTTTAGCTAAATTTTTTTGTGCATACCAAAAAAAATACAATGATCATGTCTACCAAGTT
325 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * *
4187570 TGGCGCCGAAAACACCTTTCGAAAAAATTTTAAAAAATCACA-AACCACAAAAAGTTTCAAAAAT
390 TGGGGCC-AAAACTCCTTCCGAAAAAATTTTAAAAAATC-CAGAACCGCAAAAAGTTTCAAAAAT
* * * * * *
4187634 TGTGAAAAATACAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACTATTGC
453 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
4187699 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
518 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * ** *
4187764 TACCACCGTATCGATCCACGGCTTGCGCTTCCCGTCTCTCTGGCCGGTTTAGTGCCTGCCCGCCC
583 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-CCC
* * * *
4187829 ACCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGA--TCATTCCCAGCCTAAGAT-TGAA
647 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-A
* * * * * * *
4187891 CCGAACTGAGGGTTGCGGCAGCAGGATCGACAGTATGCATAGGGGGACCCGACTGATCCTCGGCT
711 CCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
* * * * ** *
4187956 TGCGCATCTCGCCCATCTGGCTGGCTGAGCACCTGCACGCTCGTTTTATGGGTTGACTTAGGCAA
776 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
** * *
4188021 ATAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACC
841 ACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * * * * * **
4188083 GAGGGTTACGGTAGCACATGTTGGGCTCGGCCATTTGTTGGTGCCGTATTTTTCTTCACCGGGGC
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGC
* * ** * * * * * *
4188148 ACCATCGTCGAAGCATCACCGGAGAACTTGACCGACGACATTGGGGTTTCGGCGATCGGGGGGTC
66 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC
*
4188213 CGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
131 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
4188278 CGTCATTAAACCTCGAAAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
196 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
4188343 AGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTT
261 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
4188408 C-ATGTTTTTAGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTT
326 CGA-GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * *
4188472 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTC-GAACTGCAAAAAGTTTCAAAAATT
390 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CAGAACCGCAAAAAGTTTCAAAAATC
* * * *
4188536 GTGAAAAATAAAAAACGAGTCGTCTTGCGATGAAACTTCACATGAAGGCTTAAGGGACCATTGTT
454 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
4188601 TGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATAAGAAGATGTGCCTAAACCCACCT
519 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * *
4188666 ACCACCGTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCTTAGTGCCTGCTCACCCG
584 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-CCCCCG
* * * * * * *
4188731 CCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCGTATGGAGTTCATTGCCAATCTAAGATTAGACT
648 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * * * * ** * *
4188796 GGACTGAGGTTTGCGACAGTAGGATCGACAGTACGCATAGAGAGACCCGATTGATCCCTGGCTTA
713 GGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * *
4188861 CGCATCTCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATAT
778 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * * * *
4188926 AGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCTCAATCTAAGATCAGACCAGACG
843 GGAGTTCATTCCCAGTCTAAGCATA-CGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * * *
4188986 GAGGGTTGCGACAGCACATGCTAGGCTCGAGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGC
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * *
4189051 ACCAT--------CA-C--CGGAGAGCCTGACTGGCGGCATTAGGGTTCTGACGATCGGGGGGGC
66 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC
** * * *
4189105 CAGGGGGGTGTGCGCACATGATGTGTTATTGGTGCTGGTACTTAGCCCCTATATTGGCCCCCTAT
131 C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
4189170 CCCTCATCAAACCTCGAGAACTCACA---CC----AG-G--TTT--G------C-----T-C--C
195 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
4189209 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACGCT
260 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * *
4189274 TCAAGTTTTTAGCTGAATTTTTTTGTTCATGCCAAAAAAAATACAACGATCACATCTACCAAGTT
325 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * **
4189339 TGGGGCCCAAACTCTTTCCAAAAAAATTTTAAAAAATCCCA-AATAGCAAAAAGTTTC-AAAATC
390 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CCAGAACCGCAAAAAGTTTCAAAAATC
** *
4189402 AAGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC-T----T-----C-------A-C---G--
454 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
4189444 TGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCT-AACCAACCT
519 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
4189508 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCCGCGTAGTGCCCGCCCGCCCA
584 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-CCCG
* * * * * * *
4189573 CCTGTCCGCTCGTTTCGTCGATTCGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACG
648 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * *
4189638 GGACCGAGGGTTACTGCAGCAGCATCAGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTG
713 GGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * * *
4189703 TGCATCCC-CCCCTCTGGCCGACTGAGCACCTGCACGTTCGTTTCGTGGGTTGACTTAGGCATAC
778 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * *
4189767 AGAGTTCATTACCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACC
843 GGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * * * **
4189827 GAGGGTTGTGGCAGCGCATGCTGGTCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGC
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGC
*
4189892 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGG-GGCATTGGGGTTCCGACGATCAGGGGGGC
66 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC
* * *
4189956 CGGGGGGTGTGCGCACATGATGTGCGGTGGGTGCAGTTACTTGGCCCTTATATTGGCCCCCTATC
131 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
4190021 CCTCATCAAACCTCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCT
196 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
4190086 AGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
261 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
4190151 CGAGTCTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTT
326 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * *
4190216 GGGGCCAAAACTCCTTTCAAAAAAATTTTTAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCA
391 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CAGAACCGCAAAAAGTTTCAAAAATCG
*
4190280 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTAT
455 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
**
4190345 GAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTA
520 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
4190410 CCACCCTATCGATCCACGCCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCG---CCCGTT
585 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCG-C
* * * * * *
4190472 CCGTCCGCACGTTTTGTCGGTTCGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCG
649 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * * ** *
4190537 GACTGAGTGTT-CTGGCAGCAGGATCGGCAGCACGTAGAGAGGGACCTGGTCGATCACCGGCTT-
714 GACTGAGGGTTGC-GGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * *
4190600 CTGCATCCTGCCCCTCTGGCCGGTTGAGCACCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
778 C-GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * *
4190665 CGGAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCCAAGATCGGACCAGACC
842 CGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * * ** *
4190726 GAGGGTTGCGACAACACATGCTGGGCTCAGGCATGTGTTGGCACCGAATTTTTCTTCGTC-GGGC
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGC
* ** ** *
4190790 ACCATCACCGGAGCATCACCGGAGAACCTGATTGGCGGCATTGGGGTTCTGACGATC-GGGGGGC
66 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC
* *
4190854 CGGGGGCGGTTTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
131 C-GGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* ** *
4190919 TCCCTCATCAAACCTGGAGAACTCGTACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTG
194 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
4190984 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
259 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
4191049 TTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTGTACCAAGC
324 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * * *
4191114 TTGGGGCCAAAACTCATTCTGAAAAAATTTTAAAAAATCCTGAACCACAAATAGTTTCAAAAATA
389 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATC
*
4191179 GTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
454 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
4191244 TGAATTTACAAGCCATAAAAATGGCATTGGAACACAGAAATGTGAAGATGTGCCTAAACCCACCT
519 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
4191309 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT-----------GC
584 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGC
* * * *
4191363 CCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCG
649 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
** ** * * ** ** * *
4191428 GACCAAGGGTTTAGGTAGCTGGATCGATAGCGTGCAGAGGGGGACTCGACCGATCCCCGGCTTAC
714 GACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* *
4191493 GCATCCCGCCCCTTTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACATAGGCATACG
779 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* *
4191558 GAGTTCATTCCCAGTCTAACCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACC
844 GAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGGACC
** * * * * *
4191617 GAGGGTTGCTACAGCACATGCTAGGCTCGAGCATGTGTTGGTGTCGTATTTTTCTTCGTTGGGG-
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGC
* * *
4191681 --CA----C----CATCGTCGGAGAACCTGACCGACGGCATTGGGGTT-CTAGCGATCGGGGAGG
66 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGG
4191735 CCGGGGGGTGTGCGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
130 CCGGGGGGTGT--GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
4191800 ATCCCTCCTCAAACC-CTGAGAAGTCACACCCCCTTAAAGCGCATTTGAGATTTTACAGGTTTGC
193 ATCCCTCATCAAACCTC-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
4191864 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
257 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
4191929 ACTTCGAGTTTTTAGCTGAATTATTTTGTCCAAGCCAACGAAAATACAAGGATCACGTCTACCAA
322 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * *
4191994 GTTTGGGGCCAAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAA
387 GTTTGGGGCC-AAAACTCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAA
* * *
4192059 ACCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
451 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
4192124 GTATGAATTTACAAGCCATAAAAATGGCATTGACATGCAGAAATATGAAGATGTGCCTAAACCCA
516 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * * *
4192189 CTTACCACCCTATCAATCCACGGCTTACGCATCCCGTCTCTCTAGCCGGCGTAGTGTCTG---CC
581 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCC
* * * *
4192251 CGCCCGCCCACTCATTTCGTCGGTTGGCCTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
646 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * *
4192316 CCAGA-TCGA-GGTTGTGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGC
711 CCGGACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* * * * * *
4192379 TTACGCATCCCTCCTCTCTGGGCGGCTGAGCACCCGCACGCTCGTTTCATGGATTGACTTAGGCA
775 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * *
4192444 TACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTGATTCCTAGTCTAAGATCGGACCGAACC
840 TACGGAGTTCATTCCCAGTCTAAGCATACG-AGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * *
4192507 GAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCCTCGTCGGGGC
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGC
* *
4192572 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGT
66 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC
*
4192637 C--GGGGT-TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCGCCCTATC
131 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
4192699 CCTCATCAAACCTTGAGAACTCACACCCCCTT--A-A--A---GAG------CA-------T--C
196 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
4192741 --T-G------AA-----TG--A---GGACATTTTTTTCAAAGGGTCACAAAATCTTGTACACTT
261 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
4192787 TGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTT
326 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
** ** * * *
4192852 GGGGCCAAAACTAATTATGAAAAAATTTTAAAAAATCCTGACCCGTAAAAAGTTTCAAAAATCGT
391 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCGT
* *
4192917 GAAAAATAGAAAACGAGTTGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
456 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
4192982 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCGAC
521 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
4193047 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCAGCCCGCCGCCC
586 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCCC
* * * *
4193112 GCCCGCTTC-TTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-TTCTAAGATTAGACCAG
651 GCCCGC-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * * * * * * *
4193175 ACCGAGGGTTGTC-ACAGCAAGATTGGCAGCATGCAGAGAGGGACCTGACCGATCCTCGGCTTGC
715 ACTGAGGGTTG-CGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
** * *
4193239 GCATCCTACCCCTCTGGTCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACG
779 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * *
4193304 GAGTTTATTCCCAATCTAAGCATACGGAGTTAATTCCCAGTCTAAGATTGGATCGGA-C
844 GAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * * * * **
4193362 GTAGGGTTACAGCAGCACATGCTAGTCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCACCGGGG
1 G-AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGG
* * *
4193427 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG-GGCATTGAGGTTTCGACGATCGGGGGGG
65 CACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
* * * * *
4193491 TCGGGGGGGTGTGCGCACATGATGTGCGGTGGGTGCAGTTACTTGGCCCTTATATTAGCCCCCTA
130 -CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
4193556 TCCCTCATCAAACCTC-AGGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTATAAGTTTGCT
194 TCCCTCATCAAACCTCGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
4193620 GCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
258 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
4193685 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCATG
323 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * * *
4193750 TTTGGGGCCAAAAATCCTTCTGAAAAAATTTAAAAAAATCCCGAACAGAAAAAAGTTTCAAAAAT
388 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAAT
* * *
4193815 CGTGAAAAATAGAAAACGAGTCGTCTAGCCATGAAA-TGTCATGTGAAGGCCTAAGGGACCATTG
453 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT-TCACGTGAAGGCTTAAGGGACCATTG
*
4193879 TATGAATTTACAAGCCTTAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
517 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* ** *
4193944 CTACCACCCTATTGATCCACAACTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTC
582 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC--C
* * * * * * *
4194009 ATCCCGCCCGTCTGCTTGTTTTGTCGGTTGGCTTGGGCATATGGAGTTCATTCTCAGTCTAAGAT
644 --CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * *
4194074 TAGACCAGA-TCGAGGGTTGCGGCAGCAGGATCGGCAGTATGTAGAGGGGG-CCCG-CCGATCCT
707 CAGACCGGACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCC
* * *
4194136 CGGTTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGCGTTGACTTA
771 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTA
** * * * *
4194201 GAAATACAGAGTTCATTCCCAGTGTAAGCATACGAAGTTCATTCCCAGTCTAAGATAGGACCAGA
836 GGCATACGGAGTTCATTCCCAGTCTAAGCATACG-AGTTCATTCCCAGTCTAAGATCGGACCGGA
4194266 CC
900 CC
* * *
4194268 GAGGGTTGCGGCAGCATATTCTGGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGC
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGC
*
4194333 ACCATCG-C----CA------GAGAACCTAACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC
66 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC
* *
4194387 CGGGGGGTGTGGGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
131 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
4194452 CCTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
196 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
4194517 AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAAAGGGTCACAAAATCATGTACACT
261 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACT
* * * * * *
4194582 TTGAGTTTTTAGTTGAATTTTTTTTTGAATGCCAACAAAAATACAAGCATCACGTCTACCAAGCT
325 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
** * * * * *
4194647 TGGGGCCAAAACTCCTTATGAGAAAATTTTCAAAAATCCTGACCCGCAAAAAGTTTCAAAAATTG
390 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCG
*
4194712 TGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
455 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
4194777 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCTCCTA
520 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
4194842 CCACCCTATCGATCCACGGCTTGCACATCCCATCTCTTTGGCCGGTGTAGTGCCCG---CCCGGC
585 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCC
* * * *
4194904 CGCCC-CTCGTTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
650 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
** ** * * * * *
4194968 ACCAAGGGTTGCGATAGCAAGATCGACAGCA---AGA-GGGGACCCGGCTGATCCCCAGCTTGCG
715 ACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* * *
4195029 CATCCTGCCCCTCTGGTCGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
780 CATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * ** *
4195094 AGTTCATTCCTAGTCTAAGCATACGGAGTTAATTCCCAGTCTAAGATTAGACCAGACC
845 AGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGGACC
*** *
4195152 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTAATGCATTTTTCTTCGTCGAGGC
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * * * * *
4195217 ACCATCGTCTGAGCATCGTCGGAGAACCTGACCCGCCGTATTGGTGTTCTGACGATCGGAGGGGC
66 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC
* * *
4195282 CGGGGGGTGTGCGCACATGATGTTCGATGGGTGCAGGTACTTGGCCATTATATTGGCCCCCTATC
131 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
4195347 CCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
196 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * * * *
4195411 TGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAGGGTCACAAAATCATGAACACTT
261 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
4195476 CGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAGTACAAGGATCACGTCTACCAAGCTT
326 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
** * * *
4195541 GGGGCCAAAACTCCTTATGAAAAAATTTTAAAAAGTCCTG-ACTCGTAAAAAGTTTCAAAAATCG
391 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCAGAAC-CGCAAAAAGTTTCAAAAATCG
* *
4195605 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTAC
455 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
4195670 GAATTTACAAGCCATAGAAATGGCATTGGCA-GTAGAAATATGAAGATGTGCCTAAACCCACCTA
520 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * *
4195734 CCACCCTATCGATCCACGGCTTGCGCCTCCCGTTTCTCTAGCCGACGTAGTGCCCGCCCTCCCGC
585 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CCC-C
* * ** *
4195799 CTGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCATAGTCTAAGAT-TG
646 C-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * **** *
4195863 AACCGGACTGAGGGTTGCGGTAGCAAGATCGGTAGCACGCAGAGGGGGACCCGGTTAATCCTCGG
710 -ACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGG
* * * * * ** * * *
4195928 TTTGCGCATCCTGCCCCTCTGGTCGGTTAAGCAGTCGCACGCTCGTTTCGTGGGTTAATTTAGGT
774 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * *
4195993 ATACGGAGTTCATTCCTAGTCTAAGCATACGAAGTTAATTCCCAGTCTAAGATCGGACCAGACC
839 ATACGGAGTTCATTCCCAGTCTAAGCATACG-AGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * * * *
4196057 GAGGATTGTGGCAGCACATACTGGGTTCGGGCATGTGTTCGTGCCGCATTTTTCTTCGTCGGGGC
1 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * * *
4196122 TCCATCGTCGGAGCATCATTGGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGT
66 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC
* * * *
4196187 CGGGGGG-GATGCGCACATGATTTGTGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCTTAT
131 CGGGGGGTG-TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
4196251 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGC
195 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
4196316 CAGTAGCCATGAAAGAGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
260 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
4196380 ATGATTTGCA
Statistics
Matches: 13004, Mismatches: 1897, Indels: 1217
0.81 0.12 0.08
Matches are distributed among these distances:
838 27 0.00
839 7 0.00
840 4 0.00
841 168 0.01
842 181 0.01
843 62 0.00
844 6 0.00
845 4 0.00
846 52 0.00
847 4 0.00
848 10 0.00
849 22 0.00
850 86 0.01
851 40 0.00
852 17 0.00
853 222 0.02
854 107 0.01
855 45 0.00
856 291 0.02
857 6 0.00
858 8 0.00
859 86 0.01
860 4 0.00
861 53 0.00
862 21 0.00
863 2 0.00
864 7 0.00
865 7 0.00
866 37 0.00
867 176 0.01
868 115 0.01
869 88 0.01
870 107 0.01
871 5 0.00
873 8 0.00
874 3 0.00
875 3 0.00
876 168 0.01
877 69 0.01
878 265 0.02
879 2 0.00
880 253 0.02
881 80 0.01
882 260 0.02
883 234 0.02
884 191 0.01
885 6 0.00
886 448 0.03
887 118 0.01
888 43 0.00
889 184 0.01
890 224 0.02
891 332 0.03
892 594 0.05
893 349 0.03
894 434 0.03
895 468 0.04
896 89 0.01
897 10 0.00
898 171 0.01
899 226 0.02
900 532 0.04
901 826 0.06
902 1491 0.11
903 1098 0.08
904 62 0.00
905 525 0.04
906 158 0.01
907 57 0.00
908 7 0.00
909 6 0.00
910 15 0.00
911 110 0.01
912 204 0.02
913 3 0.00
914 5 0.00
915 14 0.00
916 4 0.00
917 1 0.00
918 5 0.00
919 7 0.00
920 5 0.00
921 3 0.00
923 11 0.00
924 16 0.00
925 2 0.00
926 19 0.00
927 9 0.00
928 8 0.00
929 4 0.00
930 4 0.00
931 3 0.00
933 8 0.00
934 9 0.00
936 1 0.00
937 18 0.00
938 7 0.00
939 1 0.00
940 3 0.00
941 10 0.00
942 10 0.00
943 12 0.00
944 16 0.00
945 8 0.00
946 1 0.00
947 4 0.00
948 2 0.00
949 3 0.00
950 1 0.00
951 5 0.00
954 7 0.00
955 3 0.00
956 2 0.00
957 10 0.00
958 10 0.00
959 4 0.00
960 3 0.00
961 4 0.00
962 2 0.00
965 3 0.00
968 2 0.00
969 1 0.00
970 9 0.00
971 1 0.00
973 3 0.00
974 8 0.00
977 1 0.00
978 2 0.00
979 2 0.00
980 4 0.00
981 2 0.00
983 5 0.00
984 1 0.00
985 44 0.00
986 3 0.00
987 2 0.00
988 20 0.00
989 12 0.00
990 1 0.00
991 3 0.00
992 4 0.00
993 3 0.00
994 6 0.00
995 11 0.00
996 7 0.00
997 18 0.00
998 7 0.00
999 7 0.00
1000 47 0.00
1002 3 0.00
1004 4 0.00
1005 3 0.00
1006 6 0.00
1007 10 0.00
1008 8 0.00
1009 4 0.00
1010 4 0.00
1011 8 0.00
1012 28 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGC
ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC
CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCGT
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCCC
GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
CTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGC
ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
Found at i:4188956 original size:26 final size:26
Alignment explanation
Indices: 4188920--4188972 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4188910 GTTGACTTAG
*
4188920 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAATCTAA
*
4188946 GCATATAGAGTTCATTCTCAATCTAA
1 GCATATAGAGTTCATTCCCAATCTAA
4188972 G
1 G
4188973 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAATCTAA
Found at i:4189797 original size:26 final size:26
Alignment explanation
Indices: 4189761--4189813 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4189751 GTTGACTTAG
4189761 GCATACAGAGTTCATTACCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
* *
4189787 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
4189813 G
1 G
4189814 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTACCAGTCTAA
Found at i:4191588 original size:26 final size:26
Alignment explanation
Indices: 4191552--4191602 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
4191542 TTGACATAGG
*
4191552 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACAGAGTTCATTCCCAGTCTAAC
4191578 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
4191603 GATCGGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAC
Found at i:4192471 original size:26 final size:26
Alignment explanation
Indices: 4192441--4192493 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4192431 ATTGACTTAG
*
4192441 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
4192467 GCATACGAAGTTGATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
4192493 G
1 G
4192494 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:4193326 original size:26 final size:26
Alignment explanation
Indices: 4193297--4193349 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4193287 GTTGACTTAG
*
4193297 GCATACGGAGTTTATTCCCAATCTAA
1 GCATACGGAGTTAATTCCCAATCTAA
*
4193323 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAATCTAA
4193349 G
1 G
4193350 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAATCTAA
Found at i:4195122 original size:26 final size:26
Alignment explanation
Indices: 4195086--4195138 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4195076 GTTGACTTAG
* *
4195086 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
4195112 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
4195138 G
1 G
4195139 ATTAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:4196033 original size:26 final size:26
Alignment explanation
Indices: 4195993--4196043 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
4195983 TAATTTAGGT
* * *
4195993 ATACGGAGTTCATTCCTAGTCTAAGC
1 ATACGAAGTTAATTCCCAGTCTAAGC
4196019 ATACGAAGTTAATTCCCAGTCTAAG
1 ATACGAAGTTAATTCCCAGTCTAAG
4196044 ATCGGACCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTAATTCCCAGTCTAAGC
Found at i:4196220 original size:905 final size:901
Alignment explanation
Indices: 4192739--4196379 Score: 5109
Period size: 905 Copynumber: 4.1 Consensus size: 901
4192729 TTAAAGAGCA
* * * *
4192739 TCTG-AATGAGGACATTTTTTTCAAAGGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA
1 TCTGAAATGGGGACACTTTTTTCAAAGGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAA
**
4192803 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTAATT
66 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTT
4192868 ATGAAAAAATTTTAAAAAATCCTGACCCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
131 ATGAAAAAATTTTAAAAAATCCTGACCCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* *
4192933 GTTGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
196 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
4192998 AAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCAC
261 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * **
4193063 GGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCAGCCCGCCGCCCGCCCGCTTC-TTTTGT
326 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGC-TCGTTTCAT
4193127 CGGTTGGCTTAGGCATACGGAGTTCATTCCCT--TCTAAGATTAGACCAGACCGAGGGTTGTC-A
390 CGGTTGGCTTAGGCATACGGAGTTCATT-CCTAGTCTAAGATTAGACCAGACCGAGGGTTG-CGA
* * * * *
4193189 CAGCAAGATTGGCAGCATGCAGAGAGGGACCTGACCGATCCTCGGCTTGCGCATCCTACCCCTCT
453 CAGCAAGATCGGCAGCATGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCTGCCCCTCT
* * *
4193254 GGTCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAAT
518 GGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * *
4193319 CTAAGCATACGGAGTTAATTCCCAGTCTAAGATTGGATCGGA-CGTAGGGTTACAGCAGCACATG
583 CTAAGCATACGAAGTTAATTCCCAGTCTAAGATTGGACCAGACCG-AGGGTTGCGGCAGCACATG
* * * ** *
4193383 CTAGTCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTC
647 CTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATC
* * *
4193448 GGAGAACCTGACCGG-GGCATTGAGGTTTCGACGATCGGGGGGGTCGGGGGGGTGTGCGCACATG
712 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CCGGGGGGTGTGCGCACATG
* * *
4193512 ATGTGCGGTGGGTGCAGTTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTC-AGGA
776 ATGTGCGATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GA
* *
4193576 ACTCACACCCCGTTAAAGAGCATTTGAGATTTTATAAGTTTGCTGCCAGTAGCCATTAAAGTG
840 ACTCACACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
4193639 TCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
1 TCTGAAATGGGGACACTTTTTTCAAAGGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAA
* * * *
4193704 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAAATCCTT
66 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTT
* * * * * *
4193769 CTGAAAAAATTTAAAAAAATCCCGAACAGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
131 ATGAAAAAATTTTAAAAAATCCTGACCCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* * * *
4193834 GTCGTCTAGCCATGAAA-TGTCATGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCTTA
196 GTCGTCTTGCCATGAAACT-TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
4193898 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCA
260 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
** * **
4193963 CAACTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCATCCCGCCCGTCTGCTTGT
325 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCCG-CT-C--GT
** * * *
4194028 TTTGTCGGTTGGCTTGGGCATATGGAGTTCATT-CTCAGTCTAAGATTAGACCAGATCGAGGGTT
385 TTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCT-AGTCTAAGATTAGACCAGACCGAGGGTT
* * * * *
4194092 GCGGCAGCAGGATCGGCAGTATGTAGAGGGGG-CCC-GCCGATCCTCGGTTTGCGCATCCTGCCC
449 GCGACAGCAAGATCGGCAGCATGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCTGCCC
* * ** *
4194155 CTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGCGTTGACTTAGAAATACAGAGTTCATTCC
514 CTCTGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * *
4194220 CAGTGTAAGCATACGAAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTGCGGCAGCAT
579 CAGTCTAAGCATACGAAGTTAATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAC
* *
4194285 ATTCTGGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC---GC--C
644 ATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC
* *
4194342 A---GAGAACCTAACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGGGCACA
709 ATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACA
* *
4194404 TGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
774 TGATGTGCGATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
4194469 AACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
839 AACTCACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
4194533 TCTAAAATGGGGACACTTTTTTCAAAAGGGTCACAAAATCATGTACACTTTGAGTTTTTAGTTGA
1 TCTGAAATGGGGACACTTTTTTC-AAAGGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGA
* * *
4194598 ATTTTTTTTTGAATGCCAACAAAAATACAAGCATCACGTCTACCAAGCTTGGGGCCAAAACTCCT
65 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCT
* * * *
4194663 TATGAGAAAATTTTCAAAAATCCTGACCCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACG
130 TATGAAAAAATTTTAAAAAATCCTGACCCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
*
4194728 AGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
195 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
4194793 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCCA
260 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * *
4194858 CGGCTTGCACATCCCATCTCTTTGGCCGGTGTAGTGCCCGCCCG--G-CCGCCC-CTCGTTTCAT
325 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCAT
* * ** * *
4194919 AGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGATA
390 CGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCAGACCGAGGGTTGCGACA
* * * *
4194984 GCAAGATCGACAGCA---AGA-GGGGACCCGGCTGATCCCCAGCTTGCGCATCCTGCCCCTCTGG
455 GCAAGATCGGCAGCATGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCTGCCCCTCTGG
* *
4195045 TCGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCT
520 TCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* *
4195110 AAGCATACGGAGTTAATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGCAGCACATGCTG
585 AAGCATACGAAGTTAATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTG
*** * * *
4195175 GGCTCGGGCATGTGTTGGTAATGCATTTTTCTTCGTCGAGGCACCATCGTCTGAGCATCGTCGGA
650 GGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGA
* * * * * *
4195240 GAACCTGACCCGCCGTATTGGTGTTCTGACGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGT
715 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* *
4195305 TCGATGGGTGCAGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
780 GCGATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
4195370 CACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCTATTAAAGTG
845 CACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
4195427 TCTGAAATGGGGACACTTTTTTCAAAGGGTCACAAAATCATGAACACTTCGAGTTTTTAGCTGAA
1 TCTGAAATGGGGACACTTTTTTCAAAGGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAA
* *
4195492 TTGTTTTGTGCATGCCAACAAAAGTACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTT
66 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTT
* *
4195557 ATGAAAAAATTTTAAAAAGTCCTGACTCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
131 ATGAAAAAATTTTAAAAAATCCTGACCCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* * *
4195622 GTCGTCTTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTACGAATTTACAAGCCATAG
196 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
*
4195687 AAATGGCATTGGCA-GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
261 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * *
4195751 GGCTTGCGCCTCCCGTTTCTCTAGCCGACGTAGTGCCCGCCCTCCCGCCTGCCCGCCCGCTCATT
326 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCCGCC-GCCCGCCCGCTCGTT
* * *
4195816 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCATAGTCTAAGATT-GAACCGGACTGAGGGTTG
386 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTAG-ACCAGACCGAGGGTTG
** * * *** *
4195880 CGGTAGCAAGATCGGTAGCACGCAGAGGGGGACCCGGTTAATCCTCGGTTTGCGCATCCTGCCCC
450 CGACAGCAAGATCGGCAGCATGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCTGCCCC
* * ** * * * *
4195945 TCTGGTCGGTTAAGCAGTCGCACGCTCGTTTCGTGGGTTAATTTAGGTATACGGAGTTCATTCCT
515 TCTGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * *
4196010 AGTCTAAGCATACGAAGTTAATTCCCAGTCTAAGATCGGACCAGACCGAGGATTGTGGCAGCACA
580 AGTCTAAGCATACGAAGTTAATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACA
* * * *
4196075 TACTGGGTTCGGGCATGTGTTCGTGCCGCATTTTTCTTCGTCGGGGCTCCATCGTCGGAGCATCA
645 TGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCA
* * *
4196140 TTGGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGG-GATGCGCACA
710 TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTG-TGCGCACA
* * * * * *
4196204 TGATTTGTGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAG
774 TGATGTGCGATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * *
4196269 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATGAAAGAG
839 AACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
4196333 TCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
1 TCTGAAATGGGGACACTTTTTTCAAAGGGTCACAAAATCATGTACAC
4196380 ATGATTTGCA
Statistics
Matches: 2428, Mismatches: 265, Indels: 90
0.87 0.10 0.03
Matches are distributed among these distances:
882 4 0.00
883 6 0.00
884 187 0.08
886 70 0.03
887 3 0.00
888 1 0.00
889 2 0.00
890 2 0.00
891 6 0.00
892 80 0.03
893 233 0.10
894 242 0.10
895 462 0.19
896 5 0.00
897 1 0.00
899 3 0.00
900 11 0.00
901 408 0.17
902 12 0.00
903 2 0.00
904 6 0.00
905 503 0.21
906 130 0.05
907 49 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (901 bp):
TCTGAAATGGGGACACTTTTTTCAAAGGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAA
TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTT
ATGAAAAAATTTTAAAAAATCCTGACCCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCATC
GGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCAGACCGAGGGTTGCGACAG
CAAGATCGGCAGCATGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGT
CGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
AGCATACGAAGTTAATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAG
AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
Found at i:4196499 original size:178 final size:177
Alignment explanation
Indices: 4196200--4196557 Score: 558
Period size: 178 Copynumber: 2.0 Consensus size: 177
4196190 GGGGGATGCG
** * *
4196200 CACATGATTTGTGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCT
1 CACATGATTTGCAATGGGTACTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCT
* * * *
4196265 TGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATGAAA
66 TGAGAACACACACCCCCTTAAACAGCATTTGAGATTTTATAAGTTTGCTACCAGTAGCCATGAAA
* *
4196330 GAGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
131 GAGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTA
4196377 CACATGATTTGCAATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTTATCCCTCATCAAACC
1 CACATGATTTGCAATGGGTACTGGTACTTGGCCCTTATATTGG-CCCCTTATCCCTCATCAAACC
*
4196442 TCT-AGAACACACACCCCCTTAAACAGCATTTGAGATTTT-TCAAGTTTGCTACCAGTAGCCATT
65 T-TGAGAACACACACCCCCTTAAACAGCATTTGAGATTTTAT-AAGTTTGCTACCAGTAGCCATG
* *
4196505 AAAGTGTCTGAAATGGGGACACTTTTTTCTAATGATCACAAAATCTTGTA
128 AAAGAGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTA
4196555 CAC
1 CAC
4196558 TTCAAGTTTT
Statistics
Matches: 165, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
177 40 0.24
178 124 0.75
179 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.32
Consensus pattern (177 bp):
CACATGATTTGCAATGGGTACTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCT
TGAGAACACACACCCCCTTAAACAGCATTTGAGATTTTATAAGTTTGCTACCAGTAGCCATGAAA
GAGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTA
Found at i:4197091 original size:26 final size:26
Alignment explanation
Indices: 4197061--4197113 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4197051 GTTGACTTAG
*
4197061 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
4197087 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4197113 G
1 G
4197114 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4197974 original size:26 final size:26
Alignment explanation
Indices: 4197945--4197995 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4197935 GTTGACTTAG
* *
4197945 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4197971 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
4197996 TGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4200579 original size:26 final size:26
Alignment explanation
Indices: 4200549--4200620 Score: 99
Period size: 26 Copynumber: 2.8 Consensus size: 26
4200539 TAGGCATACG
*
4200549 GAGTTCATTCCCAGTTTAAGCACACA
1 GAGTTCATTCCCAGTCTAAGCACACA
* **
4200575 GAGTTCATTCCTAGTCTAAGCACATG
1 GAGTTCATTCCCAGTCTAAGCACACA
*
4200601 GAGTTCATTCTCAGTCTAAG
1 GAGTTCATTCCCAGTCTAAG
4200621 ATCGGATTGG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.31
Consensus pattern (26 bp):
GAGTTCATTCCCAGTCTAAGCACACA
Found at i:4202379 original size:26 final size:26
Alignment explanation
Indices: 4202350--4202402 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4202340 GTTCACTTAG
*
4202350 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
4202376 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
4202402 G
1 G
4202403 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:4203414 original size:26 final size:26
Alignment explanation
Indices: 4203385--4203437 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4203375 GTTGACTTAG
*
4203385 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
4203411 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
4203437 G
1 G
4203438 ATCGGACCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:4204006 original size:26 final size:26
Alignment explanation
Indices: 4203970--4204020 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
4203960 TTGACCGAGG
* *
4203970 CATATGGAGTTGATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
*
4203996 CATACGGAGTTCATTCCTAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
4204021 GATCGGACCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:4205748 original size:26 final size:26
Alignment explanation
Indices: 4205712--4205764 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4205702 GTTAACTTAG
4205712 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
4205738 GCATATGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4205764 G
1 G
4205765 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4206493 original size:26 final size:26
Alignment explanation
Indices: 4206456--4206508 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4206446 GTTGGCTTAG
4206456 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
4206482 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4206508 G
1 G
4206509 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4207378 original size:26 final size:26
Alignment explanation
Indices: 4207342--4207394 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4207332 GTTGACTCAG
*
4207342 GCATACGGAGTTCATTGCCATTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
*
4207368 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
4207394 G
1 G
4207395 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTGCCAGTCTAA
Found at i:4208677 original size:892 final size:886
Alignment explanation
Indices: 4206438--4210646 Score: 5144
Period size: 892 Copynumber: 4.8 Consensus size: 886
4206428 TGCCCATTCA
* * *
4206438 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-CGTAGTTCATTCCCA
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAG-AGTTCATT-CCA
4206502 GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
64 GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * *
4206567 GCATTTTTCTTCGTTG-GAGCATCGTCGGAGAACCTGACCGACGGTATTGGGGTT-CGGCGATCG
129 GCATTTTTCTTCGTCGAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-
* * * * *
4206630 GGGGGGCCGGGGGGGGTGTGCGCAAATGATATCCGATGGGTGCTGGTACTTGGCCCTTATATTGG
193 GGGGGGTC-GAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * * *
4206695 C-CCCTTATCCCTCATTAAATCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAGAG
257 CACCC-TATCCCTCATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * * *
4206759 GTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATAGGGATACTTTTTTCCAATGGTCACAAAATC
321 GTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
4206824 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTC
386 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* *
4206889 TACCAAGTTTGGGGCCAAAA-ATCTTTCCAAAAAAATTTTTAAAAATCCTGAACCGCAAAAAGTT
451 TACCAAGTTTGGGGCCAAAACATCTTT--GAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTT
** * * * * * *
4206953 TCAAAAATCGTGAAAAATATAAAACGAGTCGTCTTCCCATGAAACTTCACGTGAAGGATTGAGAG
514 TTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
**
4207018 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACCCAGAAATATGAAGATGTGCCTA
579 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * * *
4207083 AACGCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGTCGGCGTAGTGCCC
644 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
* * * *
4207148 GCC-CGC-CCCTCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATACCCAGTCTAAG
709 GCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * *
4207211 AT-TGAACCAGATCGAGGGTTGCGGCA-TAGGATCGGTAGCATGCAGCGGGGGACCTGGTC-GAT
774 ATCAGAA-CAGATCGAGGGTTGCGGCAGCAGGATC-GCAGCACGCAGAGGGGGACCCGG-CAGAT
* * * * * * *
4207273 CCTCGGCTTGCACATCTCGCCCCTCTGGTCGGCTAAGCGCCCGCACGCTCA
836 CCCCAGCTTGCGCATCCCGCCCCTCTGGCCAGCTAAGCGCCCGCACGCTCG
* * * * **
4207324 TTTCGTGTGTTGACTCAGGCATACGGAGTTCATTGCCATTCTAAGCATACGGAGTTCATTTCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGTTCA-TTCCAG
* ** * * * *
4207389 TCTAAGATCGGATCGGACTAAGGGTTGCGGCAGGACATGCTGGGCTCGGGCATGTACTGGAGTCG
65 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* ** *
4207454 CATTTTTCTTCGTCG-GAGCATCG-CTGGAGAAACTGACCGGCGGCATTGGGGTTCCGGTGGTCG
130 CATTTTTCTTCGTCGAGAGCATCGTC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
* *
4207517 GGGACGTCGGGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
194 GGG-GGTC-GAGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * *
4207582 GCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
256 GCACCCTATCCCTCATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * *
4207647 GTTTGCTACCAGTAGCCATCAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATC
321 GTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
4207712 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
386 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * * *
4207777 TGCCAAGTTTGGGGTCAAAACGTCTTTGAAAAAAATTTTAAAAAATCCTGAACCGTAAAAATTTT
451 TACCAAGTTTGGGGCCAAAACATCTTTG-AAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTT
4207842 TGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
515 TGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
4207907 CCATTGTATGAATTTACAA-CTCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
580 CCATTGTATGAATTTACAAGC-CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
** * ***
4207971 AACCCACCTACCACCCTATCGATCCACGGCTTGTTCATCCCTTCTCTCTGGCCGGTATAGTGCCC
644 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
* *
4208036 GCCTGCCCTCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
709 GCC-GCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
4208101 GGTCAG-ACTGGATCGAGGGTTGCGGCAGCAGGATCGCCAACACGTAGAGGGGTACCCGGGAGAT
773 GATCAGAAC-AGATCGAGGGTTGCGGCAGCAGGATCG-CAGCACGCAGAGGGGGACCCGGCAGAT
* * *
4208165 CCCCAGCTTCCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTTG
836 CCCCAGCTTGCGCATCCCGCCCCTCTGGCCAGCTAAGCGCCCGCACGCTCG
*
4208216 TTTCCTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCTAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCC-AG
* * *
4208281 TCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCG
65 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * *
4208346 CATTTTTCTTCGTCGACTCACCATCGTCGGAGAACCTAACCGGTGGCATTGGGGTTCCGACGATC
130 CATTTTTCTTCGTCGA--GAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
* *
4208411 AGGGGGTTCGAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
193 -GGGGGGTCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
*
4208476 CACCCTATCCCTCATCAAACCTCGAAAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGG
257 CACCCTATCCCTCATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
4208541 TTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAAT-T
322 TTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * * *
4208605 TGCACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGCATCACATTT
387 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * *
4208670 ACCAAGTTTTGGGCCAAAACTTCTTCTGAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTT
452 ACCAAGTTTGGGGCCAAAACATCTT-TGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTT
*
4208735 GAAAAT-AGTGAAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGA
516 GAAAATCA-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* **
4208799 GCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGATTAA
580 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* *
4208864 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCTCG
645 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG
*
4208929 CCCGCCCGCCCGCCTGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
710 -CCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* ** * * * *
4208994 ATC-GGACAGGA-CTGAGGGTTGCGATAGCAGGTTCGACTGCACGCAGAGGGGGACCTGACCA-A
774 ATCAGAACA-GATC-GAGGGTTGCGGCAGCAGGATCG-CAGCACGCAGAGGGGGACCCG-GCAGA
* * * * *
4209056 TCCCCAGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACTCTCG
835 TCCCCAGCTTGCGCATCCCGCCCCTCTGGCCAGCTAAGCGCCCGCACGCTCG
* *
4209108 TTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAG---ATCGA----A---C---
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCAGT
4209160 C----A---GACC--A---AGGGTTGCGGCAGCACATG-T----T-GGGC---T--T-G-G--GC
66 CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
** * ** * * ** * *
4209198 A--TACCATCGTC-AGAGCATCACCGGAGGACCTGACCGACGGCATTACGGTTTCGGCGATCGGG
131 ATTTTTCTTCGTCGAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG
* * *
4209260 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
196 GGGTCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCACC
*
4209325 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
261 CTATCCCTCATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * * * *
4209390 CTGCCAGTGGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCGAGTGGTCAC-AAATCTTGAA
326 CTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* *
4209454 CACTTTGAGTTTTTAGCTGAATTTTTTTAGTGCACGCCAACAAAAATACAAGGATCACGTCTACC
391 CACTTCGAGTTTTTAGCTGAATTTTTTT-GTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * * **
4209519 AAGTTTGGGGCCAAAAC-TCCTTCCGAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGATTCAA
455 AAGTTTGGGGCCAAAACAT-CTT-TGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGA
* * *
4209583 AAATCATGAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCA
518 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * *
4209648 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACT
583 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * * *
4209713 CACCTACCATCTTATCGATCCACAGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CCG
648 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCG
* * **
4209775 CCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTTGTCTAAGATCA
713 CCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * ** * * **
4209840 GAACAGACCTAGGGTTGCAGCAGTAGGATCTGCAGCACATAGAGGGGGACCCGACCGATCCCTTG
778 GAACAGATCGAGGGTTGCGGCAGCAGGATC-GCAGCACGCAGAGGGGGACCCGGCAGATCCCCAG
* *
4209905 CTTGCGAATCCTGCCCCTCTGGCCAGCTAAGCGCCCGCACGCTCG
842 CTTGCGCATCCCGCCCCTCTGGCCAGCTAAGCGCCCGCACGCTCG
* *
4209950 TTTCGTGGGGTGACTTAGG----C--AG---A----CAG----AG--T-T-CA-TTC--T-CA-T
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCAGT
* * * * *
4209989 CTAAGATCAGACTGGACTGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAC
66 CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * *
4210054 ATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGTATTGGGGT
131 ATTTTTC--T-TC---G-----TCG--AGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGT
*
4210119 TCCGACGATCGGGGGGGACG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
183 TCCGACGATC-GGGGGGTCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
4210183 CTTATATTGGCCCCCTATCCCTCATCAAACCTC-AAGAACTCACACCCCCTTAAAGAGCATTTGA
247 CTTATATTGGCACCCTATCCCTCATCAAACCTCGAA-AACTCACACCCCCTTAAAGAGCATTTGA
* *
4210247 GATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTAAAATGGGGACATTTTTTTCAAATGG
311 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGG
* * * *
4210312 TCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTTTTTATGCATGCCAAAAAAAAATACA
376 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACA
* * * * ** *
4210377 AGGATCACATCTACC-AGTATCGGGCCAAAACACCGTCCGAAAAAATTTTAAAAAAT-TTCGAAC
440 AGGATCACGTCTACCAAGTTTGGGGCCAAAACATC-TTTGAAAAAATTTTAAAAAATCCT-GAAC
*
4210440 CG-TAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
503 CGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
*
4210504 AGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-T-CATAGAAATAT
568 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC--AGAAATAT
* ** *
4210567 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCACCTCTCTAGC
631 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
*
4210632 TGACGTAGTGCCCGC
696 CGACGTAGTGCCCGC
4210647 TTGGTCGACA
Statistics
Matches: 2908, Mismatches: 313, Indels: 216
0.85 0.09 0.06
Matches are distributed among these distances:
824 1 0.00
825 3 0.00
827 1 0.00
829 4 0.00
833 2 0.00
836 5 0.00
838 2 0.00
841 19 0.01
842 158 0.05
843 6 0.00
844 5 0.00
845 208 0.07
846 293 0.10
847 5 0.00
848 1 0.00
849 7 0.00
850 1 0.00
851 3 0.00
852 1 0.00
853 2 0.00
854 2 0.00
855 1 0.00
856 2 0.00
857 1 0.00
858 2 0.00
860 3 0.00
861 3 0.00
864 1 0.00
865 1 0.00
866 19 0.01
869 3 0.00
871 183 0.06
872 255 0.09
873 71 0.02
874 2 0.00
878 1 0.00
882 1 0.00
885 2 0.00
886 162 0.06
887 19 0.01
888 453 0.16
889 12 0.00
890 3 0.00
891 80 0.03
892 675 0.23
893 175 0.06
894 5 0.00
895 39 0.01
896 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (886 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCAGT
CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
ATTTTTCTTCGTCGAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG
GGGTCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCACC
CTATCCCTCATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAACATCTTTGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAA
TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCC
GCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAA
CAGATCGAGGGTTGCGGCAGCAGGATCGCAGCACGCAGAGGGGGACCCGGCAGATCCCCAGCTTG
CGCATCCCGCCCCTCTGGCCAGCTAAGCGCCCGCACGCTCG
Found at i:4211174 original size:823 final size:821
Alignment explanation
Indices: 4209975--4211470 Score: 2210
Period size: 823 Copynumber: 1.8 Consensus size: 821
4209965 TAGGCAGACA
* *** * *
4209975 GAGTTCATTCTCATCTAAGATCAGACTGGACTGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCA
1 GAGTTCATTCCCATCTAAGATCAGACCAAACCGAAGGTTGCAGCAGCACATGCTGGGCTCGGGCA
* * * * * ** *
4210040 TGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
66 TGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACAATCGCCGAAGCATCACCAGAGAACCTGACC
**
4210105 GACGGTATTGGGGTTCCGACGATCGGGGGGGACGGGGGGTGTGCGCACATGATGTGCGATGGGTG
131 GACGACATTGGGGTTCCGACGATCGGGGGGGACGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
4210170 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
196 CTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
* *
4210235 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTAAAATGGGGACATT
261 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
* * *
4210300 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTTTTTATGCATGCCA
326 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTATGCATGCC-
* **
4210365 AAAAAAAATACAAGGATCACATCTAC-CAGTATCGGGCCAAAACACCGTCCG-AAAAAATTTTAA
390 AAAAAAAATACAAGGATCACATCTACAAAGTATCGGGCCAAAA-ACCGTCCGAAAAAAATTAAAA
** * ** * *
4210428 AAAATTTCGAACCG-TAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
454 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGCCTCGCCATGA
*
4210492 AACTTCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-T
519 AACTTCACGTCAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
4210556 CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCC
584 C--AGAAATATGAAGATGTGCCAAAACACACCTACCACCCTATCGATCCACGGCTTACGCATCCC
*
4210621 ACCTCTCTAGCTGACGTAGTGCCCGCTTGGTCGACAGTAGGATCGGCAGCATGCAGAGGGGGACC
647 ACCTCTCTAGCCGACGTAGTGCCCGCTTGGTCGACAGTAGGATCGGCAGCATGCAGAGGGGGACC
4210686 CGGTCGATCCCCAGCTTTCGCATCCCACCCCTCTAGCCAGCTGAGCGCCCGTATGCTCGTTTTGT
712 CGGTCGATCCCCAGCTTTCGCATCCCACCCCTCTAGCCAGCTGAGCGCCCGTATGCTCGTTTTGT
4210751 GGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTCAGCATATG
777 GGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTCAGCATATG
**
4210796 GAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAAGGTTGTGGCAGCACATGCTGGGCT-GAGG
1 GAGTTCATTCCCA-TCTAAGATCAGACCAAACCGAAGGTTGCAGCAGCACATGCTGGGCTCG-GG
* * *
4210860 CATGTGCTGGTGTCGCATTTTTCTTCGCCGGGGCACAATCGCCGAAGCATCACCAGAGAACTTGA
64 CATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACAATCGCCGAAGCATCACCAGAGAACCTGA
* * * * * * *
4210925 TCGGCGACATTGGGGTTCTGGCGATCGGGGGTGCCGTGTGGGTGTGCGCACATGATGTGCGATGG
129 CCGACGACATTGGGGTTCCGACGATCGGGGGGGACG-GGGGGTGTGCGCACATGATGTGCGATGG
* ** * *
4210990 GTGCTCGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCATAGCCCC
193 GTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
*
4211055 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
258 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
*
4211120 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTGTGCATG
323 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTATGCATG
* ** * * * * * *
4211185 CCAAAAAAAATATAAGGATCATGTCTACAAAGTTTGGGGCTAAAATCCTTTCGAAAAAAATTAAA
388 CCAAAAAAAATACAAGGATCACATCTACAAAGTATCGGGCCAAAAACCGTCCGAAAAAAATTAAA
* *
4211250 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGCCTCGCCATG
453 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGCCTCGCCATG
* * *
4211315 AAACTTCACGTCAGGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
518 AAACTTCACGTCAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
4211380 TGCAGAAATATGAAGATGTGCCAAAACACACCTACCACCCTATCGATCCACGGCTTGCGCATTCG
583 T-CAGAAATATGAAGATGTGCCAAAACACACCTACCACCCTATCGATCCACGGCTTACGCATCCC
* * *
4211445 GCCTCTCTGGCCGCCGTAGTGCCCGC
647 ACCTCTCTAGCCGACGTAGTGCCCGC
4211471 CCACCCGCTC
Statistics
Matches: 592, Mismatches: 75, Indels: 13
0.87 0.11 0.02
Matches are distributed among these distances:
821 13 0.02
822 151 0.26
823 245 0.41
824 181 0.31
825 1 0.00
826 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (821 bp):
GAGTTCATTCCCATCTAAGATCAGACCAAACCGAAGGTTGCAGCAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACAATCGCCGAAGCATCACCAGAGAACCTGACC
GACGACATTGGGGTTCCGACGATCGGGGGGGACGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTATGCATGCCA
AAAAAAATACAAGGATCACATCTACAAAGTATCGGGCCAAAAACCGTCCGAAAAAAATTAAAAAA
AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGCCTCGCCATGAAA
CTTCACGTCAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATCA
GAAATATGAAGATGTGCCAAAACACACCTACCACCCTATCGATCCACGGCTTACGCATCCCACCT
CTCTAGCCGACGTAGTGCCCGCTTGGTCGACAGTAGGATCGGCAGCATGCAGAGGGGGACCCGGT
CGATCCCCAGCTTTCGCATCCCACCCCTCTAGCCAGCTGAGCGCCCGTATGCTCGTTTTGTGGGT
TGACTTAGGCATACAGAGTTCATTCCCAGTCTCAGCATATG
Found at i:4212329 original size:26 final size:26
Alignment explanation
Indices: 4212293--4212345 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4212283 GTTGACTTAG
4212293 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4212319 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4212345 G
1 G
4212346 ATCGGATCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4213229 original size:26 final size:26
Alignment explanation
Indices: 4213193--4213245 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4213183 GTTGACTTAG
4213193 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
4213219 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4213245 G
1 G
4213246 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4214564 original size:26 final size:25
Alignment explanation
Indices: 4214534--4214588 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 25
4214524 TGGGTTGACT
*
4214534 TAAGCATAC-GAAGTTCATTCCCAGTC
1 TAAGCATACAG-AGTTCATT-CCAATC
4214560 TAAGCATACAGAGTTCATTCCAATC
1 TAAGCATACAGAGTTCATTCCAATC
4214585 TAAG
1 TAAG
4214589 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 9 0.33
26 17 0.63
27 1 0.04
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.27
Consensus pattern (25 bp):
TAAGCATACAGAGTTCATTCCAATC
Found at i:4216973 original size:876 final size:877
Alignment explanation
Indices: 4214563--4217856 Score: 4792
Period size: 876 Copynumber: 3.8 Consensus size: 877
4214553 CCCAGTCTAA
* * * * * *
4214563 GCATAC-AGAGTTCATTCCAATCTAAGATCGGACCGGATCGACGGTT-CTGGTAGCCCATGCTGG
1 GCATACGA-AGTTCATTCCCATCTAAGATCGGACCGGACCGAGGGTTAC-GGCAGCACATGCAGG
* * *
4214626 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCACCGAAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGAAG
* * * * * * *
4214691 AACCTGACCGGCAGCATTGGTGTTCTGACGATCGGAGGGG-TCG-GGGGGGTTTGTGCACATGAT
129 AACCCGACAGACAGCATTGGGGTTCCGACGATCGG-GGGGCT-GAGGGGGGTCTGCGCACATGAT
4214754 GTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
4214819 CACACCCCCTTAAAGGGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
4214884 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-TTTTTAGCTGAACTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTTT
4214948 TTGTGCATGCCAACAAAATTACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTCCGAA
387 TTGTGCATGCCAACAAAATTACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTCCGAA
* *
4215013 AAATCTTTAAAAAAATCTTGAACCACAGAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
452 AAATCTTT-AAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
4215078 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
4215143 GGCATTGGCAAGCAGAAATATGAAGATGTGCCTAA-CCCACCTACCACCCTATCGATCCAGGGCT
581 GGCATTGGCATGCAAAAATATGAAGATGTACCTAAGCCCACCTACCACCCAATCAATCCAGGGCT
* * * * * * * * ** * *
4215207 TGCGTATCCCGTCTCTCTGGCTGGCGTAGTGCCTGCCCGCCCGCCCACCCTCTCATTTCGTCGGT
646 TGCGTATCCCGTCTCTCTGGCCGGCGAAGTCCCTGCCTGCCTGCTCGCCCGCTTGTTTCATCGGA
* ** * * * ***
4215272 TGGCTTAGGCATACAGAGTTCATTCCTTGTCTAAGATTAGATCAGA-CTGAGGGTTGCGGTAGTA
711 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATC-GAGGGTTACAACAGTA
* ** *** * * *
4215336 GGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCAGCCCCTCTGGCCG
775 GGATCGGTAGCACGCAAAGGGGGACCCGGTCGATCCCTAACTTACGCATCCCGCCCCTCTGGCTG
** * * * *
4215401 ATTAAGGGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
840 GCTGAGCGCCCGTACGCTCGTTTCGTGGGTTCACTTAG
* * * * * * *
4215439 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGCCCGAGGGTTACGGTAGCATATGCTGGG
1 GCATACGAAGTTCATTCCCA-TCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCAGGG
* * * *
4215504 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCAGCATCGTCGGAGCATCACTGGACA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCA-TCGA-A
** * * * * * ** *
4215569 -AA-CTTACCGGCAGCATTGGCGTTCCGACGATCGGGGGGGT-CGGGGGGTGGGCGCAAATGATG
128 GAACCCGACAGACAGCATTGGGGTTCCGACGATCGGGGGGCTGAGGGGGGTCTGCGCACATGATG
* *
4215631 TCCGATGGGTGCTAGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
4215696 ACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC---AGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
4215758 ATGGGTACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTTTT
* * * *
4215823 TGTGCATGCCAAGGAAAA-TACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCC-AA
388 TGTGCATGCCAA-CAAAATTACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTCCGAA
* * * * *
4215886 AAATATTTTAAAAAATCCCGAACCATAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCG
452 AAAT-CTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
4215951 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
4216016 GGCATTTGCATGCAAAAATATGAAGATGTACCTAAGCCCACCTA-CACCCAATCAATCCAGGGCT
581 GGCATTGGCATGCAAAAATATGAAGATGTACCTAAGCCCACCTACCACCCAATCAATCCAGGGCT
4216080 TGCGTATCCCGTCTCTCTGGCCGGCGAAGTCCCTGCCTGCCTGCTCGCCCGCTTGTTTCATCGGA
646 TGCGTATCCCGTCTCTCTGGCCGGCGAAGTCCCTGCCTGCCTGCTCGCCCGCTTGTTTCATCGGA
4216145 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACAACAGTAG
711 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACAACAGTAG
4216210 GATCGGTAGCACGCAAAGGGGGACCCGGTCGATCCCTAACTTACGCATCCCGCCCCTCTGGCTGG
776 GATCGGTAGCACGCAAAGGGGGACCCGGTCGATCCCTAACTTACGCATCCCGCCCCTCTGGCTGG
4216275 CTGAGCGCCCGTACGCTCGTTTCGTGGGTTCACTTAG
841 CTGAGCGCCCGTACGCTCGTTTCGTGGGTTCACTTAG
** *
4216312 GCATACGAAGTTCATTCCCATACTAAGATCGGATTGGACCGAGGGTTACGGCAGCACATTCAGGG
1 GCATACGAAGTTCATTCCCAT-CTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCAGGG
* * ** *
4216377 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGAAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGAAGA
* *
4216442 ACCCGACAGACGGCATTGGGGTTCCGGCGATCGGGGGGCTGAGGGGGGTCTGCGCACATGATGTG
130 ACCCGACAGACAGCATTGGGGTTCCGACGATCGGGGGGCTGAGGGGGGTCTGCGCACATGATGTG
*
4216507 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
4216572 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATTAACGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
4216637 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-TTTTTAGCTGAACTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTTTTTG
4216701 TGCATGCCAACAAAATTACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTCCGAAAAA
390 TGCATGCCAACAAAATTACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTCCGAAAAA
* *
4216766 TCTTTAAAAAATCTTGAACCACAGAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
455 TCTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
4216831 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
4216896 TTTGCATGCAAAAATATGAAGATGTACCTAAGCCCACCTA-CACCCAATCAATCCAGGGCTTGCG
585 TTGGCATGCAAAAATATGAAGATGTACCTAAGCCCACCTACCACCCAATCAATCCAGGGCTTGCG
4216960 TATCCCGTCTCTCTGGCCGGCGAAGTCCCTGCCTGCCTGCTCGCCCGCTTGTTTCATCGGATGGC
650 TATCCCGTCTCTCTGGCCGGCGAAGTCCCTGCCTGCCTGCTCGCCCGCTTGTTTCATCGGATGGC
4217025 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACAACAGTAGGATC
715 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACAACAGTAGGATC
* *
4217090 GGTAGCACGCAAAGGGGGACCCGGTCGATCCTTAACTTATGCATCCCGCCCCTCTGGCTGGCTGA
780 GGTAGCACGCAAAGGGGGACCCGGTCGATCCCTAACTTACGCATCCCGCCCCTCTGGCTGGCTGA
4217155 GCGCCCGTACGCTCGTTTCGTGGGTTCACTTAG
845 GCGCCCGTACGCTCGTTTCGTGGGTTCACTTAG
** *
4217188 GCATACGAAGTTCATTCCCATACTAAGATCGGATTGGACCGAGGGTTACGGCAGCACATTCAGGG
1 GCATACGAAGTTCATTCCCAT-CTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCAGGG
* ** *
4217253 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCGTCGCCGGAGCATCATCGAAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGAAGA
* * *
4217318 ACCCGACAGACGGCATTGGGGTTCCGGCGATCGGGGGGCTAAGGGGGGTCTGCGCACATGATGTG
130 ACCCGACAGACAGCATTGGGGTTCCGACGATCGGGGGGCTGAGGGGGGTCTGCGCACATGATGTG
* * * * *
4217383 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTTGAGAACTGAT
195 CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
4217448 ACCCCTTTAAAGTGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCGTTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
4217513 GGGGACACTTTTTTCAAATTGTCACAAAATCTTGAACACTTCCAGTTTTTAGCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTTTTTG
* * * * * ** ** * **
4217578 TGCATGCCAACAAAAATACAGGGATCATGGCCACCAAGTTCGGGGCCAAAACGCTTTTTGAAAGA
390 TGCATGCCAACAAAATTACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTCCGAAA-A
** * *
4217643 AT-TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTCAAAAATAGAAAACGAGTCGTCT
454 ATCTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* **
4217707 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAGATGTT
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
4217772 ATTGGCGTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAAT-CACGGCTTG
584 ATTGGCATGCAAAAATATGAAGATGTACCTAAGCCCACCTACCACCCAATC-AATCCAGGGCTTG
* *
4217836 CGCATCCCGCCTCTCTGGCCG
648 CGTATCCCGTCTCTCTGGCCG
4217857 ACGTAGTGCC
Statistics
Matches: 2209, Mismatches: 184, Indels: 48
0.90 0.08 0.02
Matches are distributed among these distances:
871 1 0.00
872 6 0.00
873 561 0.25
874 202 0.09
875 8 0.00
876 973 0.44
877 411 0.19
878 43 0.02
879 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (877 bp):
GCATACGAAGTTCATTCCCATCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCAGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATCGAAGAA
CCCGACAGACAGCATTGGGGTTCCGACGATCGGGGGGCTGAGGGGGGTCTGCGCACATGATGTGC
GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTTTTTGT
GCATGCCAACAAAATTACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTCCGAAAAAT
CTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAAAAATATGAAGATGTACCTAAGCCCACCTACCACCCAATCAATCCAGGGCTTGCGT
ATCCCGTCTCTCTGGCCGGCGAAGTCCCTGCCTGCCTGCTCGCCCGCTTGTTTCATCGGATGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACAACAGTAGGATCG
GTAGCACGCAAAGGGGGACCCGGTCGATCCCTAACTTACGCATCCCGCCCCTCTGGCTGGCTGAG
CGCCCGTACGCTCGTTTCGTGGGTTCACTTAG
Found at i:4219171 original size:26 final size:26
Alignment explanation
Indices: 4219142--4219194 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4219132 GTTGACTTAG
*
4219142 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4219168 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4219194 G
1 G
4219195 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4220627 original size:864 final size:861
Alignment explanation
Indices: 4217938--4220678 Score: 3272
Period size: 878 Copynumber: 3.1 Consensus size: 861
4217928 ATTGCCAGTG
*
4217938 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
1 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATG
* *
4218003 TGCCTAAATCCACCTACCACCCTATCAATCCACGTCTTGTGCATCCCGTCC-CTCTAGCCGACGT
66 TGCCTAAACCCACCTACCACCCTATCGATCCACG-CTTGTGCATCCCG-CCTCTCTAGCCGACGT
* * *
4218067 AGTG-CCGACCGCCGCCCCACCCGCCCA-CTCGTTTCGTGTT-GCTTAGGCATACGAAG-TCATT
129 AGTGCCCG--C-CCG-CCCGCCCGCTCATTTCG--TCG-GTTGGCTTAGGCATACGAAGTTCATT
* * ** **
4218128 TCCAGGCTAAGATTGGACCTGG-CCAAGGGTTCCGACAGCAGGAT-TGGTAGCACACAGAGGGGG
187 CCCAGTCTAAGATTGGACC-GGACCAAGGGTTGTGGTAGCAGGATCT-GTAGCACACAGAGGGGG
* * **
4218191 ACCCAACCGATCCCCGGCTTGCTCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTT
250 A-CCAAACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTT
* * * *
4218256 CGTGGGTTCCCTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCA-GGTTGCGA
314 CGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGAGGGTTGCGA
* * * * * * *
4218320 TAGCACAAGGCTGGGCTCGGG-TTGTG-TTG-GTCGTA-TTTTCTTCGTTCAGGGCACCCATCGT
379 CAGCAC-ATGCTGGGCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCG-TCGGGGCA-CCATCGT
** * *
4218381 CGGAAGCCATACATCGGAGAACCCGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGCCGGGGG
441 CGG-AG-CAT-CGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-----G--GGGGG
* *
4218446 GTGTGCGCACATGATGTGTGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCAT
496 GTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
4218511 CAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTA-C
561 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGC
4218575 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
626 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
*
4218640 TTTAGCTGAATTCTTTTGTGCATGACAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
691 TTTAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* ** * * * * *
4218705 AAAAATTTTTTCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATTATGAAAAA
755 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCATGAAAAA
* *
4218770 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCA
820 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* *
4218812 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGGAATATGAAGATG
1 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATG
** * * * *
4218877 TGCGGAAACCCACCTACCACCCTATCGAACCACGGCTTGCGCATCCTGCCTCTCTGGCCGACGTA
66 TGCCTAAACCCACCTACCACCCTATCGATCCAC-GCTTGTGCATCCCGCCTCTCTAGCCGACGTA
* *
4218942 GTGCCCGCCCGCCCGCCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATC
130 GTGCCCGCCCGCCCG-CCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTC
* * * * * *
4219007 TAAGATTGGATCGGACCAAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGA-GGGGACCTTAACA
194 TAAGATTGGACCGGACCAAGGGTTGTGGTAGCAGGATCTGTAGCACACAGAGGGGGACC-AAACG
* * *
4219071 ATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCGTACGCTCGTTTCGTGGGTTG
258 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTC
4219136 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGA
323 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A--C------C-G-
* * *
4219201 CCAGAGCGAGGGTTGCGACAGCACATGCTGGGCTC-GGCATGTGCTGGTGCTGCATTTTTCTTCA
365 ---GA-CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCG
* * * * *
4219265 TCGGGGCACCATCGTTGGAGCATTGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCAATTG
426 TCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCG
** * * * *
4219330 GGGGGCCG-G-G----GGGTGTGCGCA-----AAT-G-ATTTGCGCCCTTATATTGGCCCCCTAT
491 GGGGGGTGTGCGCACATGATGTGCG-ATGGGTACTGGTACTTG-GCCCTTATATTGGCCCCCTAT
* * ** * *
4219382 CCCTCATCAAACCTTGAAAACTCGTACCCCCTTAAAGAGCATTTGTGATTTTACAGGTTTGCTGC
554 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGC
* * *
4219447 CAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCGAGTGGTCACAAAATCTTGTACACT
619 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * * *
4219512 TCAAGTTTTTAGCTGAAATTTTTAGTTCATGCCAAAAAAAATACAAGGATCACATCTACTAAGTT
684 TCGAGTTTTTAGCTG-AATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * *
4219577 TGAGG-CAAAACTCCTTCCGAAAAAAGTTTAAAAAATCTCAAACCGAAAAAAGTTTCAAAAACCA
748 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCA
4219641 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
813 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * *
4219690 TAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGGACGCAAAAATATGAAGATG
1 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATG
* * * **
4219755 TGCCTAAACCCACCTACCACCCTATTGATCCACGATTGTGCATCCCGCCTCTCAAGCCGGTGTAG
66 TGCCTAAACCCACCTACCACCCTATCGATCCACGCTTGTGCATCCCGCCTCTCTAGCCGACGTAG
* *
4219820 TGCCCGCCCGCCCGTCCGCTCATTTCGTCGGTTGGCTTAGGCATGCGAAGTTCATTCCCAGTCTA
131 TGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTA
* * * * * * *
4219885 AGATTGAACCGGATCGAGGGTTGTGGTAGCAGGATCTATAGCACATAGAGGGGGACTCGATCGAT
196 AGATTGGACCGGACCAAGGGTTGTGGTAGCAGGATCTGTAGCACACAGAGGGGGAC-CAAACGAT
* * * *
4219950 CCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGGTCGTTTCATGGGTTTAC
260 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTCAC
* *
4220015 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCACATGC
325 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAGGGTTGCGACAGCACATGC
* * * * *
4220080 TGGACTCGGGCATGTGCTAGTGCCACATTTTTTTTCGTCGGGGCAGCATCGCCGGAGCATCGCCG
389 TGGGCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCG
* * * **
4220145 GAGAACCTGACTGGTGGCATTGGGGTTCTGATGATCGGGGGGGTGTGCGCACATGATGTGCGATG
454 GAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGTGTGCGCACATGATGTGCGATG
* * * * *
4220210 GGTGCTGGTACTTGGGCCTTATATTTGCCCCCTATCCCTCCTCAAACATCGAGAACTCACACCCC
519 GGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
4220275 CTTACAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAATGGGGA
584 CTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * * *
4220340 CAATTTTTTCAAATGGTCACAAAATCTTTTACACTTTGAGTTTTTAGCTGAATTGTTTTGGGCAA
649 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCAT
* * *
4220405 GCCAACAATAATACAAGGATCACGTCTACCAGGTTTGGGGCCCAAACTCCTTCCGAAAAAATTTT
713 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * *
4220470 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCAT
778 AAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
4220535 GAAACTTCACGTGAGGGCT
843 GAAACTTCACGTGAAGGCT
* * * *
4220554 TAAGGGACCGTTGTATGAATTTACAAGCCATAAAATTGCCATTGGCACGTAGAAATATGAAGATG
1 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATG
* * * * *
4220619 TGCCTAAACCCACCTACCACCCTACCGATCCATGGCTTGCGCATCCCGCCCCTCTGGCCG
66 TGCCTAAACCCACCTACCACCCTATCGATCCA-CGCTTGTGCATCCCGCCTCTCTAGCCG
4220679 GCTGAGCGCC
Statistics
Matches: 1587, Mismatches: 214, Indels: 141
0.82 0.11 0.07
Matches are distributed among these distances:
850 1 0.00
851 27 0.02
852 83 0.05
853 1 0.00
854 1 0.00
855 1 0.00
856 1 0.00
857 1 0.00
858 7 0.00
862 6 0.00
863 187 0.12
864 192 0.12
865 21 0.01
870 5 0.00
871 120 0.08
872 60 0.04
873 9 0.01
874 119 0.07
875 7 0.00
876 89 0.06
877 143 0.09
878 268 0.17
879 115 0.07
880 4 0.00
883 6 0.00
884 2 0.00
886 1 0.00
887 1 0.00
888 1 0.00
889 6 0.00
891 1 0.00
892 1 0.00
896 33 0.02
897 7 0.00
898 18 0.01
899 24 0.02
900 10 0.01
901 8 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (861 bp):
TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATG
TGCCTAAACCCACCTACCACCCTATCGATCCACGCTTGTGCATCCCGCCTCTCTAGCCGACGTAG
TGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTA
AGATTGGACCGGACCAAGGGTTGTGGTAGCAGGATCTGTAGCACACAGAGGGGGACCAAACGATC
CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTCACT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGAGGGTTGCGACAGCACATGCTG
GGCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGA
GAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGTGTGCGCACATGATGTGCGATGGG
TACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCC
AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
AAATCCCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCT
Found at i:4221315 original size:706 final size:697
Alignment explanation
Indices: 4219946--4221465 Score: 2175
Period size: 706 Copynumber: 2.2 Consensus size: 697
4219936 GGGACTCGAT
* * *
4219946 CGATCC-TCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGGTCGTTTCATGGG
1 CGATCCAT-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* **
4220010 TTTACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCA
65 TTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACTGAGGGTTACAACAGCA
*
4220075 CATGCTGGACTCGGGCATGTGCTAGTGCCACATTTTTTTTCGTCGGGGCAGCATCGCCGGAGCAT
129 CATGCTGGACTCGGGCATGTGCTAGTGCCACATTTTTTTTCGTCGGGGCAGCATCGCCAGAGCAT
* * * *
4220140 CGCCGGAGAACCTGACTGGTGGCATTGGGGTTCTGATGATCGGGGGGGTGTGCGCACATGATGTG
194 CGCCGAAGAACCTGACCGGCGGCATTGGGGTTCTCATGATCGGGGGGGTGTGCGCACATGATGTG
* * * * * * * *
4220205 CGATGGGTGCTGGTACTTGGGCCTTATATTTGCCCCCTATCCCTCCTCAAACATCGAGAACTCAC
259 CGATGGGTACTAGTACTTGGCCCCTATATTGGCCCCATATCCCTCATAAAACATCGAGAACTCAC
* * *
4220270 ACCCCCTTACAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAAT
324 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTACCAGTAGCAATTAAAGTGTCTGAAAT
** * * * *
4220335 GGGGACAATTTTTTCAAATGGTCACAAAATCTTTTACACTTTGAGTTTTTAGCTGAATTGTTTTG
389 GGGGACAATTTTTTCAAATCATCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATTGTTTTA
* * * *
4220400 GGCAAGCCAACAATAATACAAGGATCACGTCTACCAGGTTTGGGGCCCAAACTCCTTCCGAAAAA
454 GGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAA
4220465 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTT
519 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTT
* * * * *
4220530 GCCATGAAACTTCACGTGAGGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAATTGCCA
584 GCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAATAGCCA
* *
4220595 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAC
649 TTGGAACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAC
4220644 CGATCCATGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
1 CGATCCATGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * *
4220709 TGACTTTGGCATACGGAGTTCATTCGCGGTCTAAGATCAGACCGGACTGAGGGTTCCAACAGCAC
66 TGACTTAGGCATACGGAGTTCATTC-CAGTCTAAGATCAGACCGGACTGAGGGTTACAACAGCAC
* *
4220774 ATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGTCGGGGCAGCATCGCCAGAGCATC
130 ATGCTGGACTCGGGCATGTGCTAGTGCCACATTTTTTTTCGTCGGGGCAGCATCGCCAGAGCATC
*
4220839 GTCGAAGAACCTGACCGGCGGCATTGGGGTT-TCATCGATCAGGGGGGCCGGGGGGTGTGCGCAC
195 GCCGAAGAACCTGACCGGCGGCATTGGGGTTCTCAT-GATC------G--GGGGGGTGTGCGCAC
*
4220903 ATGATGTGCGATGGGTACTAGTACTTGGCCCCTATATTGGCCCCATATCCCTCATAAAACCTCGA
251 ATGATGTGCGATGGGTACTAGTACTTGGCCCCTATATTGGCCCCATATCCCTCATAAAACATCGA
* ** * *
4220968 GAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGTCGGTAGCCATTAAAGTG
316 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTACCAGTAGCAATTAAAGTG
* *
4221033 TCTGAAATGGGGACACTTTTTTCAAATCATCACATAATCTTGTACACTTCGAGTTTTTAGCAGAA
381 TCTGAAATGGGGACAATTTTTTCAAATCATCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAA
* *
4221098 TAT-TTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCA
446 T-TGTTTTAGGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCA
* * *
4221162 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACG
510 TCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACG
4221227 AGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATA
575 AGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCAT-
* *
4221292 AAAATAG-CATTGGAACATAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTAT
639 AAAATAGCCATTGGAACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAC
* * * * * * * *
4221350 CGATCGACGACTTGCGCATCCCGTCTCTCTGGCTGGCATAGTGCCCGCTTGCCCGCCCGCTCGTT
1 CGATCCATGGCTTGCGCATCCCGCCCCTCTGGCCGGC----TG--AGC--GCCCGCACGCTCGTT
* *
4221415 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACC
58 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCAGACC
4221466 CGACCAAGGG
Statistics
Matches: 728, Mismatches: 72, Indels: 28
0.88 0.09 0.03
Matches are distributed among these distances:
697 4 0.01
698 210 0.29
699 1 0.00
704 1 0.00
706 441 0.61
707 7 0.01
710 2 0.00
712 2 0.00
713 1 0.00
714 59 0.08
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (697 bp):
CGATCCATGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACTGAGGGTTACAACAGCACA
TGCTGGACTCGGGCATGTGCTAGTGCCACATTTTTTTTCGTCGGGGCAGCATCGCCAGAGCATCG
CCGAAGAACCTGACCGGCGGCATTGGGGTTCTCATGATCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTACTAGTACTTGGCCCCTATATTGGCCCCATATCCCTCATAAAACATCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTACCAGTAGCAATTAAAGTGTCTGAAATGG
GGACAATTTTTTCAAATCATCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATTGTTTTAGG
CAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGC
CATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAATAGCCATT
GGAACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAC
Found at i:4223986 original size:26 final size:26
Alignment explanation
Indices: 4223956--4224008 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4223946 GTTGACTTAG
4223956 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4223982 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4224008 G
1 G
4224009 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4225790 original size:26 final size:26
Alignment explanation
Indices: 4225754--4225806 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4225744 GTTGACTTAG
*
4225754 GCATATAGAGTTCATTACCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
*
4225780 GCATACAGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
4225806 G
1 G
4225807 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTACCAGTCTAA
Found at i:4226002 original size:899 final size:897
Alignment explanation
Indices: 4223297--4227166 Score: 5284
Period size: 899 Copynumber: 4.3 Consensus size: 897
4223287 CAGAGGGGGA
4223297 CCTTATATTGGCCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC-TAAAGAGCATTTG
1 CCTTATATTGG-CCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTG
*
4223361 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
65 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
4223426 GTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACA
130 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* *
4223491 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTGCTT-CGAAAAAAATTTTAAAAAATCACGAAC
195 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAAATCCCGAAC
* ** *
4223555 CGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTGA
259 CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * *
4223620 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCGTGTAGAAATATGA
324 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* **
4223685 AGATGTGCCTAAACCCACCTACCACCCTATCAATCTGCGGCTTGCGCATCCCGTCTCTCTGGCCG
389 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * *
4223750 ACGTAGTGCCCGCCCGCCCGCTCGCTCATTTCATCGGTTGGCTAAGGCATACGGAGTTCATTCCC
454 GCGTAGTGCCGGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * * *
4223815 AGTCTAAGATCAGACCAGACCGAGTGTTGTGATAGCAGGATCTGTAGCATGTA-AAAAAAGGACC
519 AGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAGATC-GCAGCA--CACAAAAAGGGACC
* * * * * * * *
4223879 CAATCAATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGTTGACCGCTCGTATGCTCATTTCAT
581 CGATCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAT
4223944 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
646 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAG
* * *** *
4224009 ATCAGACCAGATCTAGGGTTGCGGTGGCACATACTAGGCTCGGGCACGTGCTGGTGCCGCATTTT
710 ATCGGACCAGATCAAGGGTTGCGACAGCACATACTAGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * * * *
4224074 TCTTTATCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGACCTG-CGGACATTGGGGTTCC
775 TCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACC-GACGG-CATTGGGGTTCC
* * *
4224138 GACGATCGGAGGGACCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGC
838 GACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * * *
4224198 CCTTATATTGGCCCTCTATCCCTCATCAAACCTCT-ACAACTCACACCCCTTTAAGGAGCATTTG
1 CCTTATATTGGCCCCCTATCCCTCATCAAACCT-TGAGAACTCACACCCCCTTAAAGAGCATTTG
*
4224262 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATG
65 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
*
4224327 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCTACAAAAATACA
130 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * *
4224392 AGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTTCTGAAAAAGTTTTAAAAAATCCTGAACC
195 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
* *
4224456 GCAAAAAGTTTCAAAAATCGTGGAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
260 GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * * *
4224521 GGCTTAAGGGACCATTGTATGAATTTAAAAACTATAAAAATGGCATTGCCATGCAGAAATATGAA
325 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
* * **
4224586 GATGTGCCTAAAACCACCTACCACCCTATTGATCCACGGCTTGCTTATCCCGTCTCTCTGGCCGG
390 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * * * *
4224651 TGTAGTGTCGGTCCGCCTGCCCGCTCGTTTCATTGGTTGGCATAGGCATACGGAGTTCATTCCCA
455 CGTAGTGCCGGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * ** * * *
4224716 GTCTAAGATCGGACCAGAACAAGGGTTGC-AGCAGCAAGATCGGTAGCACGTAGAAGGGGACCTG
520 GTCTAAGATCAGACCAGACCGAGGGTTGCGA-CAGCAAGATC-GCAGCACACAAAAAGGGACCCG
* * * * * * * * *
4224780 ATCGATCCTCGGCTTGCGTATCGCACCCTTCTTGCCGGCTAAGCGCCCGCACGCTTGTTTCGTGG
583 ATCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGG
*
4224845 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCGAAGCATACGCAGTTCATTCCCAGTCTAAGAT
648 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG-AGTTCATTCCCAGTCTAAGAT
* * ** * * * *
4224910 CGAACCAGACCAAGGGTTGCGGTAGCACATACTGGGCTCGGGCATGTGCTTGTACCACATTTTTC
712 CGGACCAGATCAAGGGTTGCGACAGCACATACTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * * * **
4224975 TTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGACATTTGGGTTCCGGTG
777 TTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
4225040 ATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
842 ATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
4225096 CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
1 CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
4225161 GATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGG
66 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
4225226 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCAAGCCAACAAAAATACAA
131 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* *
4225291 GGATCACGTCTACCAGGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
196 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
*
4225356 CAAAAAGTTTCAAAAATTCGTGAAAAATAGAAAACGAGTCCGTCTTTCCATGAAACTTCACGTGA
261 CAAAAAGTTTCAAAAA-TCGTGAAAAATAGAAAACGAGT-CGTCTTGCCATGAAACTTCACGTGA
* *
4225421 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGA
324 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* *
4225486 AGATGTGCCTGAACCCACCTAGCACCCTATCGATCCACGGCTTGCGCAT-CC-T-TCTCTGG-CG
389 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* *
4225547 GCGTAGTGCCAGCTTGCCCGCCCGCCCGCTCGTTTCGTCGGTTTGCTTAGGCATACGGAGTTCAT
454 GCGTAGTGCC-G---GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
** * * ** * * **
4225612 TCTTAGTCTACGATCAGACCAGACCGAGTGTTGCGGTA-CCAGATCAGCAGCACACAGAGGGGGA
515 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAGATC-GCAGCACACAAAAAGGGA
* * * * * * * * *
4225676 CCCGGTTGATCCCCGGA-AT-CGCATCCCGCCCCTCTCGCTGGCTGAGCACCCGCACACTCCTTT
579 CCCGATCGATCCCC-GACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* ** * *
4225739 TATGGGTTGACTTAGGCATATAGAGTTCATTACCAGTCTAAGCATACAGAGTTCATTGCCAGTCT
643 CATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCT
* * * * *
4225804 AAGATTGGACCAGATCAAGGGTTACGACAGTACATGCTAGGCTCGGGCATGTGCTGGTGCTGCAT
707 AAGATCGGACCAGATCAAGGGTTGCGACAGCACATACTAGGCTCGGGCATGTGCTGGTGCCGCAT
** * * *
4225869 TTTTCTTCGTCGGGGCACTATCACCGGAGCATCGCCGGAGAACCTGACCGACGGTATTGGGGTTC
772 TTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTC
*
4225934 CGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGC
837 CGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* *
4225995 CCTTATATTGGCCCTCTATCCCTCATCAAACCTCT-ACAACTCACACCCCCTTAAAGAGCATTTG
1 CCTTATATTGGCCCCCTATCCCTCATCAAACCT-TGAGAACTCACACCCCCTTAAAGAGCATTTG
* * * * *
4226059 AGATTTTACAAGTTTGCTGCCAGTAACCATTAAAGTGTATAAAATGGGGACACTTTTTTCAGATG
65 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
4226124 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
130 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * * *
4226189 AGGATCATGTCTACGAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAAATCCCGAAC
195 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCCGAAC
* *
4226254 CGCAAAAAGTTTCTAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGA
259 CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
*
4226319 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCATGCAGAAATATGA
324 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
*
4226384 AGATGTGCATAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
389 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * ** * *
4226449 ACGTAGT----GCCCGCCTGCCCGCTCGTTTCATCCATTGGCTTAGGCATACAGAGCTCATTCCC
454 GCGTAGTGCCGGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * ** * *
4226510 AGTCTAAGATCGGATCGGATCGAGGGTTATGACAGCAAGATCGACAGCACGCAAAGAGGGACCCG
519 AGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAGATCG-CAGCACACAAAAAGGGACCCG
* * * *
4226575 -GCTGATCCACGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCTTG
583 ATC-GATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATG
*
4226639 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA-TAT-C-AG---A----C---C----A-
647 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGAT
* ** *
4226686 --GACC-G----AGGGTTGCGACAGCACATGCTAGGCTTAGGCATGTGCTGGTGCCGTATTTTTC
712 CGGACCAGATCAAGGGTTGCGACAGCACATACTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* *
4226744 TTCACCTGGGCACCATCGCCGGAGCATCGCCGGAGAA-CTCGACC-AGCGGCATTGGGGTTCCGG
777 TTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCT-GACCGA-CGGCATTGGGGTTCCGA
*
4226807 TGATCGGGGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
840 CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
4226864 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
1 CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
4226929 GATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
66 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
4226994 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
131 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* ** *
4227059 GGATCACATCTACCAAGGTTT-TAGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACC
196 GGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
*
4227123 GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
260 GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
4227167 CAGGCATACG
Statistics
Matches: 2637, Mismatches: 297, Indels: 103
0.87 0.10 0.03
Matches are distributed among these distances:
868 56 0.02
869 270 0.10
870 113 0.04
874 1 0.00
875 4 0.00
878 1 0.00
882 1 0.00
885 1 0.00
889 1 0.00
892 2 0.00
894 73 0.03
895 33 0.01
896 75 0.03
897 17 0.01
898 409 0.16
899 764 0.29
900 428 0.16
901 380 0.14
902 8 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (897 bp):
CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
GTAGTGCCGGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAGATCGCAGCACACAAAAAGGGACCCGATC
GATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCGGA
CCAGATCAAGGGTTGCGACAGCACATACTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
CCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG
GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
Found at i:4227365 original size:26 final size:26
Alignment explanation
Indices: 4227326--4227381 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
4227316 TAGGTTGACT
*
4227326 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAATC
*
4227352 TAAGCATACGGAGTTCATTCCCAATC
1 TAAGCATACAGAGTTCATTCCCAATC
4227378 TAAG
1 TAAG
4227382 ATCAGACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAATC
Found at i:4228183 original size:26 final size:26
Alignment explanation
Indices: 4228146--4228198 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4228136 GTTGACTTAG
4228146 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
4228172 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
4228198 G
1 G
4228199 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:4229082 original size:26 final size:26
Alignment explanation
Indices: 4229046--4229098 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4229036 GTTGACTTAG
*
4229046 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4229072 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4229098 G
1 G
4229099 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4229978 original size:25 final size:26
Alignment explanation
Indices: 4229944--4229995 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
4229934 GTTGACTTAG
4229944 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4229969 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4229995 G
1 G
4229996 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 16 0.62
26 10 0.38
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4230139 original size:897 final size:894
Alignment explanation
Indices: 4227687--4230430 Score: 3814
Period size: 897 Copynumber: 3.1 Consensus size: 894
4227677 ATCGGGACAC
* * * * *
4227687 GTCTACCAAGTATGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAG
1 GTCTACCAAGTTTGGGGCCAAAACGCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG
* * * *
4227752 TTTTAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACATCACGTGAAGGCTTAAG
66 TTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG
*
4227817 GGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGAACTCAAAAATATG-AGATGTGCC
131 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACT-AAAAATATGAAGATGTGCC
* *
4227881 TAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTTGACGGCGTAGTGC
195 TAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* * *
4227946 CCGCCTACCCGCCCGTCTGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCT
260 CCG----CCCGCCCGCCCGCTC-TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCT
* * * * * * * * * *
4228011 AAGATCAAACCGGACTGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAAAAGGGGACTCGATTGA
320 AAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATTGGCAGCACAC-AGAGGGGACCCGGTCGA
**
4228076 TACCCGGCTTGAGCATTTCGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGA
384 T-CCCGGCTTGAGCATCCCGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGA
* *
4228141 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
448 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * *
4228206 CAGACTGATGGTTGC-GACAGCACCTGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG
513 CAGACCGAGGGTTGCAG-CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG
* * * * * *
4228270 CTGAGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCAACGATCG
577 CCGGGGCACCATCTTCGGAGCATCGCCGGAGAACCTGTCCGGTGGCATTGGGGTTCCGACGATCG
4228335 GGGGGGCC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
642 GGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT-GCCCTTATATTGGC
* * *
4228399 CCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATATGT
706 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
4228464 TTGTTGCCA-TAGCCATTAAAGTGTCTGAAATGGGGACACTGTTTTT-GAATGGTCACAAAATCT
771 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT-TTTTTCAAATGGTCACAAAATCT
* * * * *
4228527 TGTACACTTCGAGCTTTTACCTGAATTTTTTATGCATGCCAACAAATATACAAGGATCAC
835 TGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCAT
* * *
4228587 GTCTACCAAGTTT-GGCCCTAAAACTG-CTTCCGAAAAAATTTTAAAAAATCCCTAACCACAAAA
1 GTCTACCAAGTTTGGGGCC-AAAAC-GCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAA
* * * **
4228650 AGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCATTTGAAGGCTTA
64 AGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTA
* * * *
4228715 AGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGTATTGGCACGTAGAAATATGAAGATGTG
129 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAAC-TAAAAATATGAAGATGTG
* * *
4228780 CCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTCTCTGGCCGACATAGC
193 CCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTA--
* * * *
4228845 GCCTGCCCGTCCGCCCGCCCGCTCATTTTGTCGGTCGGCTTAGGCATACGGAGTTCATTCCTTGT
256 G--TGCCCGCCCGCCCGCCCGCTC-TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGT
** * * * * *
4228910 CTAAGATCAGACC-AGACCAAGGGTTGTGGCAGCCGGATTGGCAGCACATAGAGGGGGTCCCTG-
318 CTAAGATCAGACCGA-ACTGAGGGTTGCGGCAGCAGGATTGGCAGCACACAGA-GGGGACCCGGT
* *
4228973 CTGATCCCCGGCTTGTGCATCCCGCCCCTC-GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGG
381 C-GAT-CCCGGCTTGAGCATCCCGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGG
*
4229037 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
444 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
4229102 AGACCAGACCAAGGGCTGCAGCAGCACATGCTGGGGTC-AGGCATGTGCTTGTGCTGCATTTTTC
509 AGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCATTTTTC
* * *
4229166 TTCGTCGGGGCACCAT-TGTCGGAGCATCGCCAGAGAACCTAAT-CGGTGGCATTGGGGTTCCGA
573 TTCGCCGGGGCACCATCT-TCGGAGCATCGCCGGAGAACCT-GTCCGGTGGCATTGGGGTTCCGA
* *
4229229 CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGTCCCTTAT
636 CGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG-CCCTTAT
* *
4229294 ATTGGCCCCCTATCCCTCATGAAA-CTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTT
700 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
4229358 ACAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAA
765 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
4229423 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTCGTGCATTCCAACAAAAATACAACGG-TG
830 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT-GTGCATGCCAACAAAAATACAA-GGATC
4229487 AT
893 AT
* * * *
4229489 GTCTACCAAGTTTGGGTCCAAAGCGCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGGAAAAAG
1 GTCTACCAAGTTTGGGGCCAAAACGCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG
* *
4229554 TTTTGAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG
66 TTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG
* *
4229619 GGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGTACATAAAAATATGAAGATGTGCC
131 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAAC-TAAAAATATGAAGATGTGCC
* * * *
4229684 TAAACCGACCTACCACCCTATCGATCCATGGCTTGCGCAT-CCGTCTCTCTGGCCGGCGTAGAGC
195 TAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* * * *
4229748 CCGCCCGCCCACCCGCTCTTGTCGTCGGTTGGCTTAGGCATATGGAGTTAATTCCCAGTCTAAGA
260 CCGCCCGCCCGCCCGCTCTT-TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGA
* * *
4229813 TCAGACCGAACTGAGGGTTACAGCAGCAGAATTGGCAGCACACAGAGCGGGACCCGGTCGATCTC
324 TCAGACCGAACTGAGGGTTGCGGCAGCAGGATTGGCAGCACACAGAG-GGGACCCGGTCGATC-C
* * ** * *
4229878 CGGCTTGCGCATCCCGCCCCTCTAGCTGGCTGAGTGCCCGCGCGCTTGTTTCGTGGGTTGACTTA
387 CGGCTTGAGCATCCCGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTA
4229943 GGCATACGGAGTTCATT-CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
452 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
*
4230007 CCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGG
517 CCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGG
* ** * *** * *
4230072 GCACCATCTTCGAAGCATCGTTGGAGAACCTGTCCGGTAGCATTAAAGTTTCGACGATCGAGGGG
582 GCACCATCTTCGGAGCATCGCCGGAGAACCTGTCCGGTGGCATTGGGGTTCCGACGATCGGGGGG
* *
4230137 GCCGTGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATT-GCCCCCT
647 GCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCCT
4230201 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
711 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
4230266 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
776 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
4230331 CTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATGCAAGGATCAT
841 CTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCAT
* **
4230386 GTCTACCAAGTTTGGGGCAAAAATTCCTTCCGAAAAAATTTTAAA
1 GTCTACCAAGTTTGGGGCCAAAACGCCTTCCGAAAAAATTTTAAA
4230431 TGGCAGCACA
Statistics
Matches: 1626, Mismatches: 182, Indels: 75
0.86 0.10 0.04
Matches are distributed among these distances:
896 26 0.02
897 523 0.32
898 62 0.04
899 5 0.00
900 425 0.26
901 345 0.21
902 227 0.14
903 7 0.00
905 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
GTCTACCAAGTTTGGGGCCAAAACGCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG
TTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG
GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACTAAAAATATGAAGATGTGCCT
AAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
CGCCCGCCCGCCCGCTCTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC
AGACCGAACTGAGGGTTGCGGCAGCAGGATTGGCAGCACACAGAGGGGACCCGGTCGATCCCGGC
TTGAGCATCCCGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
GGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCAC
CATCTTCGGAGCATCGCCGGAGAACCTGTCCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCG
AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCAT
Found at i:4230789 original size:414 final size:414
Alignment explanation
Indices: 4230019--4230844 Score: 1345
Period size: 414 Copynumber: 2.0 Consensus size: 414
4230009 GAGGGTTGCA
* * *
4230019 GCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCTTCG
1 GCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCGTCG
*** * **
4230084 AAGCATCGTTGGAGAACCTGTCCGGTAGCATTAAAGTTTCGACGATCGAGGGGGCCGTGGGGGTG
66 AAGCATCACCGGAGAACCTGACCGCCAGCATTAAAGTTTCGACGATCGAGGGGGCCGTGGGGGTG
* *
4230149 TACGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGCCCCCTATCCCTCATCAAA
131 TACACACATGATGTGCGATGGGTGCTAGTACTTAGCCCTTATATTGCCCCCTATCCCTCATCAAA
* *
4230214 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
196 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATT
*
4230279 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
261 AAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
4230344 GCTGAATTGTTTTGTGCATGCCAAAAAAAATGCAAGGATCATGTCTACCAAGTTTGGGGCAAAAA
326 GCTGAATTGTTTTGTGCATGCCAAAAAAAATGCAAGGATCATGTCTACCAAGTTTGGGGCAAAAA
4230409 TTCCTTCCGAAAAAATTTTAAATG
391 TTCCTTCCGAAAAAATTTTAAATG
* *
4230433 GCAGCACATGTTGGGCTCGGGCATGCT-CTGGTGCCACATTTTTCTTCACCAGGGCACCATCGTC
1 GCAGCACATGCTGGGCTCGAGCATG-TGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCGTC
* * * *
4230497 GGAGCATCACCGGAGAACCTGACCGCCGGCATT-AGGGTTCTGACGATC-AGGGGGGCCGTGGGG
65 GAAGCATCACCGGAGAACCTGACCGCCAGCATTAAAGTTTC-GACGATCGA-GGGGGCCGTGGGG
* * * *
4230560 GTTTGCACACATGATGTGTGATGGGTGCTAGTACTTTGCCCTTATATTGGCCCCCTATCCCTCAT
128 GTGTACACACATGATGTGCGATGGGTGCTAGTACTTAGCCCTTATATT-GCCCCCTATCCCTCAT
**
4230625 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTACAAGTTTGCTACTTGTAGC
192 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGC
4230689 CATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
257 CATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
*
4230754 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATGCAAGGATCATGTCTACCAAGTTTGGGGCA
322 TTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATGCAAGGATCATGTCTACCAAGTTTGGGGCA
4230819 AAAATTCCTTCCGAAAAAATTTTAAA
387 AAAATTCCTTCCGAAAAAATTTTAAA
4230845 AAATCCTGAA
Statistics
Matches: 381, Mismatches: 27, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
413 6 0.02
414 317 0.83
415 58 0.15
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (414 bp):
GCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCGTCG
AAGCATCACCGGAGAACCTGACCGCCAGCATTAAAGTTTCGACGATCGAGGGGGCCGTGGGGGTG
TACACACATGATGTGCGATGGGTGCTAGTACTTAGCCCTTATATTGCCCCCTATCCCTCATCAAA
CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATT
AAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
GCTGAATTGTTTTGTGCATGCCAAAAAAAATGCAAGGATCATGTCTACCAAGTTTGGGGCAAAAA
TTCCTTCCGAAAAAATTTTAAATG
Found at i:4231255 original size:26 final size:26
Alignment explanation
Indices: 4231226--4231278 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
4231216 GCGCCCACAT
*
4231226 GCATACGGA-TTTCATTCCCAGTCTAA
1 GCATACAGAGTTT-ATTCCCAGTCTAA
*
4231252 GCATACAGAGTTTATTCCTAGTCTAA
1 GCATACAGAGTTTATTCCCAGTCTAA
4231278 G
1 G
4231279 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTTATTCCCAGTCTAA
Found at i:4234476 original size:900 final size:894
Alignment explanation
Indices: 4231226--4235683 Score: 5045
Period size: 901 Copynumber: 4.9 Consensus size: 894
4231216 GCGCCCACAT
* * * * *
4231226 GCATACGGATTTCATTCCCAGTCTAAGCATACAGAGTTTATTCCTAGTCTAAGATCGGACCGGAC
1 GCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCGGACCGGAC
* * * *
4231291 TGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTGTATTTCTCTTC-CCTGAG
65 TGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCC-GGG
* * * * * *
4231355 GCACCATCGTCGGAGTATTGCCGGAGAACCTGATCGTCGGCATTGGGGTT-TCGGCGATCGGGGG
129 GCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCT-GACGATCGGGGG
* * * * *
4231419 GGTC-GGGGGGTGTGCGCACGTGATGCGCGATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCC
193 GGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
4231483 TATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
258 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
4231547 TGCCAGTAGCCATTAAAGTGTCTAAAAAGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
323 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
4231612 ACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAACAGAAATACAAGGATCATGTCTACCAA
388 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * * *
4231677 GTTTGGGGAAAAATTGCTTTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAAT
453 GTTTGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CCAAACCGCAAAAAGTTTCAAAAAT
* ** * *
4231742 CGTCAAAAATAGAAAACGAGTAATCTTGACATGAAACTTTATGTGAAGGCTTAAGGGACCATTGT
517 CATCAAAAATAGAAAACGAGTCGTCTTGACATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
4231807 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGTAATATGAAGATGTGCCTAAACCCACC
582 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * *
4231872 TACCACCCTATCGATCCACGGTTTGCGCATCTCGTCTCTCTGGCCAACGTAGTGCCCGCCCGCCC
647 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCC
4231937 GCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGAC
712 G-CCG----CTCGTTTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGAC
4232002 CAGATCGAGGGTTACGGTAGCAGGATCGATAGCACGTAGAGGGGGACCCGATCGATCCCTGGCTT
771 CAGAT-GAGGGTTACGGTAGCAGGATCGATAGCACGTAGAGGGGGACCCGATCGATCCCTGGCTT
* * * ** *
4232067 GCGCATCCCACCCCTCTGGTCGGTTGAGTACTCGCACACTCGTTTCATGGGTTGACTTAG
835 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAG
* * ** * *
4232127 GTATTCGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTTTAAGATCGGACGGGAT
1 GCATACG-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCGGACCGGAC
* * * *
4232192 TGAAGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCCGGTGCTGCATTTTTCTTCGTCGGGG
65 TGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
* * * * ** * * *
4232257 CACCATCATCAGATCATCGCCAGAGAACCTGACCGATGGTGTTAGGGTTCTGAGGATC-AGGGGG
130 CACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGG
* * *
4232321 CCCGGGGGGTATGCACAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
195 CCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
4232386 TCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTGCTGC
260 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT--TGC
* ** *
4232450 AGTGCCA-TACAAGGACACTTAAAG-GTTCACAAAAT--CGAC-CATTGATGTTTCAAAT-GTGC
323 --TGCCAGT---A-GCCA-TTAAAGTG-TC-TGAAATGGGGACAC-TT--T-TTTCAAATGGT-C
* *
4232509 ACCAAAAATC-TGTTACACTCCAGTTTAGGTTTCTGAATTTTTCTCGAACTGAATTTTTTTGTGC
374 A-C-AAAATCTTG-TACA---C---------TTC-G-AGTTTT-T--AGCTGAATTTTTTTGTGC
* * * * * *
4232573 ATGCCAACAGAAATACAAGGATCATGTCTACCAAGTTTGGGGAAAAATTGCTTTCGAAAAAATTT
419 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCAAAAACTCCTTCCGAAAAAATTT
* * * *
4232638 TAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTCAAAAATAGAAAACAAGTCATCTTGACA
484 TAAAAAAT-CCAAACCGCAAAAAGTTTCAAAAATCATCAAAAATAGAAAACGAGTCGTCTTGACA
* *
4232703 TGAAACTTTATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
548 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
4232768 CATGCAGTAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGTTTGCGCATC
613 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
4232833 TCGTCTCTCTGGCCAACGTAGTGCCCGCCCG--C-CCACTCGTTTCGTCGGTTGGCTTAGGCATA
678 CCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCCGCTCGTTTCGTC-GTTGGCTTAGGCATA
4232895 CGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTACGGTAGCAGGATCGATAGCACG
742 CGGAGTTCATTCCCAGTCTAAGATTGGACCAGAT-GAGGGTTACGGTAGCAGGATCGATAGCACG
* * * * ** *
4232960 TAGAGGGGGACCCGATCGATCCCTGGCTTGTGCATCCCACCCCTCTGGTCGGTTGAGTACTCGCA
806 TAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
4233025 CACTCGTTTCATGGGTTGACTTAG
871 CACTCGTTTCATGGGTTGACTTAG
* * * *
4233049 GTATTCGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTTTAAA-ATCGGACGGGA
1 GCATACG-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG-TCAAAGATCGGACCGGA
* * * * * * *
4233113 TTGAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATATGCTGGTGCTGCATTTTTCTTTGTCGGG
64 CTGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGG
* ** * * *
4233178 GAACCATCGCCGGAGCACCGCCGGAGAACCTGACCGACGGAATTGGGGTTCCGACGATCGGGGGG
129 GCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGG
* * *
4233243 GCCGGGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCT
194 GCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
4233308 ATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCT
259 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
4233373 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTCGTACA
324 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
4233438 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGGCAA-AAAAA-ACAAAGGGATCACGTCTACCA
389 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC-AA-GGATCACGTCTACCA
* * *
4233501 AGTTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAAA
452 AG-TTTGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CAAACCGCAAAAAG-TTTCAAA
* *
4233566 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG-CCAT
514 AATCATCAAAAATAGAAAACGAGTCGTCTTGACATGAAACTTCACGTGAAGGCTTAAGGGACCAT
** **
4233630 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGGTGATGTGCCTAAACCC
579 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* *
4233695 ACCTACCACCCAATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCAGCGTAGTGCCCGCCCG
644 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCG
* * * * *
4233760 CCCGCCTGCTCATTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCTAGACCAAGATTGGACC
709 CCCGCC-GCTCGTTTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
** * * *
4233825 AGAGTGAGGGTTGTGGTAGCAGGATCGGTAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTG
772 AGA-TGAGGGTTACGGTAGCAGGATCGATAGCACGTAGAGGGGGACCCGATCGATCCCTGGCTTG
* * ** * *
4233890 CGCATCCCGCCCCTCTAGCCAGCTGAGCGCCCGCATGCTTGTTTCGTGGGTTGACTTAG
836 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAG
* * *
4233949 GCATACTGAGTTCACTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCAAAGATCAGACCGGAC
1 GCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCGGACCGGAC
* * * * * *
4234014 CGAGGGTTACGGTAGCACATACTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
65 TGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
** ** *
4234079 CACCATCATCAAAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTT-TCGACGATCGGGGGG
130 CACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCT-GACGATCGGGGGG
* * *
4234143 GCCAGGGGGGGTGTTCACACACGGTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
194 GCC-GGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
4234208 TATCCCTCATCAAACATCGAGAACTCACACCCCCTTAAAGAAG-ATTTGAGATTTTACAAGTTTG
258 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG-AGCATTTGAGATTTTACAGGTTTG
* * *
4234272 CTGCCAGTAGCTATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTA
322 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* *
4234337 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATGCAAGGATCACGTTTACCA
387 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * ** *
4234402 TGTTTTGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAATACCGAACCGCAAAAAGTTTCAAAA
452 AG-TTTGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CCAAACCGCAAAAAGTTTCAAAA
* *
4234467 ATCATGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
515 ATCATCAAAAATAGAAAACGAGTCGTCTTGACATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * * *
4234532 GTATGAATTTACAAGCCTTAAAAACGGCACTGGCATGCAGAAATATGAAGATGTGCCTAAGCCCA
580 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * * * * * **
4234597 CGTACCACCCTATCAATCCACGACTTGCGCATCTCGTGTCACTGGCCAGCATAGTGCCCTATCAA
645 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCC--GCCC
* * * * *** *
4234662 TCCACGGCTTGCGCATCCCGTCTC-TC-TAGCCAGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTC
708 GCC-C-GC---CGC-T--CGTTTCGTCGTTG---GCTTAG-G--CATACG---G--AG--T--TC
** * * *** * *
4234725 GATTGGCTTAGGCATACGGAGTTCTTTCCCAGTCTAAGATCGGACTAGATTGAGGGTTACGATAG
750 -ATT--CCCAGTC-TA---AGAT-TGGACCAG---ATGA--GG----G-TT-ACGG------TAG
** ** *
4234790 CAGGATCGGCAGCACACAGAGGGGGACCCGACCGAT-CCTCGGCTTGCGCATCCCGCCCCTCTGG
790 CAGGATCGATAGCACGTAGAGGGGGACCCGATCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGG
** * * *
4234854 CTAGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAG
854 CCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAG
* * *
4234895 GCATACGGAGTTCACTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCAGACCAGAC
1 GCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCGGACCGGAC
** * * * *
4234960 CAAGGGTTACAGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGG
65 TGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
*
4235025 CA-C--CATC---G--T---CGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGG
130 CACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCTGACGATC-GGGGGG
* * * *
4235079 GCCGGGGGGGTGTGCGCACATGATGTGCAATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCTT
194 GCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
4235144 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGATCATTTGAGATTTTACAGGTTTGCT
259 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
4235209 GCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAGAATCTTGTACA
324 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
4235274 CTTCTAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAATATACAAGGATCACGTCTACCAAG
389 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * ** *
4235339 TTTGAGGTC-AAAACT-CTTCCGAAAGAATTTTAAAAAATCTCAAACCGCAAGACGTTTTGACAA
454 TTTG-GG-CAAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CAAACCGCAAAAAGTTTCAAAAA
* * * * *
4235402 TCGTAAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
516 TCATCAAAAATAGAAAACGAGTCGTCTTGACATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
4235467 TATGAATTTACAAGCCATAAAAATGACATTGGCATGCAGAAATATAAAGATGTGCCTAAA-CCAC
581 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* ** *
4235531 CTACCACCCTATCGATCCACGGCATGCGCATCCCGTCTCTCTGG-TTGACGTAGTGCCCGCACGC
646 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAG-CGTAGTGCCCGCCCG-
** * * * * **
4235595 CCGCTTGCCCGCTTATTTCGTCGATCGACTTAGGCACACGGAGTTCATTCCCGGTCTAAGATCAG
709 CC-C--G-CCGCTCGTTTCGTCG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGG
* * *
4235660 ATCGGACTGAGGGTTGCGGTAGCA
769 ACCAGA-TGAGGGTTACGGTAGCA
4235684 CATGTTGGGC
Statistics
Matches: 3102, Mismatches: 321, Indels: 277
0.84 0.09 0.07
Matches are distributed among these distances:
892 5 0.00
893 2 0.00
894 6 0.00
895 40 0.01
896 169 0.05
897 60 0.02
898 8 0.00
899 9 0.00
900 391 0.13
901 659 0.21
902 12 0.00
903 7 0.00
904 4 0.00
905 8 0.00
906 2 0.00
907 6 0.00
908 13 0.00
909 14 0.00
910 16 0.01
911 11 0.00
912 15 0.00
913 17 0.01
914 10 0.00
915 10 0.00
916 12 0.00
917 9 0.00
918 4 0.00
920 7 0.00
921 1 0.00
922 351 0.11
923 97 0.03
924 31 0.01
925 12 0.00
926 4 0.00
927 6 0.00
928 9 0.00
929 5 0.00
930 311 0.10
931 7 0.00
932 6 0.00
933 53 0.02
934 159 0.05
935 278 0.09
936 11 0.00
938 2 0.00
939 2 0.00
940 3 0.00
943 4 0.00
945 3 0.00
946 221 0.07
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
GCATACGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCGGACCGGACT
GAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGC
ACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGGC
CGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
TGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCAAACCGCAAAAAGTTTCAAAAATCATC
AAAAATAGAAAACGAGTCGTCTTGACATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCCG
CTCGTTTCGTCGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATGAGGG
TTACGGTAGCAGGATCGATAGCACGTAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGC
CCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAG
Found at i:4234676 original size:49 final size:49
Alignment explanation
Indices: 4234604--4234704 Score: 148
Period size: 49 Copynumber: 2.1 Consensus size: 49
4234594 CCACGTACCA
* * *
4234604 CCCTATCAATCCACGACTTGCGCATCTCGTGTCACTGGCCAGCATAGTG
1 CCCTATCAATCCACGACTTGCGCATCCCGTCTCACTAGCCAGCATAGTG
* * *
4234653 CCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTAGCCAGCGTAGTG
1 CCCTATCAATCCACGACTTGCGCATCCCGTCTCACTAGCCAGCATAGTG
4234702 CCC
1 CCC
4234705 GCCCGCCCGC
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.18, C:0.39, G:0.20, T:0.24
Consensus pattern (49 bp):
CCCTATCAATCCACGACTTGCGCATCCCGTCTCACTAGCCAGCATAGTG
Found at i:4238340 original size:26 final size:26
Alignment explanation
Indices: 4238304--4238355 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
4238294 TTGACATAGC
4238304 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
*
4238330 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
4238356 ATAAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:4238882 original size:899 final size:899
Alignment explanation
Indices: 4235632--4239292 Score: 4936
Period size: 899 Copynumber: 4.1 Consensus size: 899
4235622 ACTTAGGCAC
* * * * *
4235632 ACGGAGTTCATTCCCGGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCACATGTTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* **
4235697 GGCATGTGCTGGTGCCGCACTTTTCTTCGTCGGGGCACCATCGCCGGAGCGA-CGTTAGAGAACC
66 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGC-ATCGTCGGAGAACC
* * ** *
4235761 TGACAGGCCGCATAAGGGTTCCGACGATCGGGGGGACCGGTTGGCGTGTGCGCACATGATGTGCG
130 TGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CCGG--GGGGTGTGCGCACATGATGTGCG
* ** *
4235826 ATGGGTGCTGGTATTTGGCTGTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
192 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
4235891 CCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCTATTAAAGTGTTTGAAATGG
257 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
4235956 GGACACTATTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTG
322 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
*
4236021 CATGCCAA-AAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
387 CATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAA
* * * * *
4236085 TTTTAAAATATCCCAAACCTTAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCGTCTTG
451 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
4236150 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
516 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
4236215 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCAATCCATGGCTTGCTC
581 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** * *
4236280 ATCCCGTCTCAGTGGCCGGCGTAGTTCCCACCCGCCCGTCTGCCCGCCCGCTCGTTTCGTC-GAT
646 ATCCCGTCTCTCTGGCCGGCGTAG-T---GCCCGCCCG-C--CCCGCCCGCTCGTTTCATCAG-T
* * ** * * * * * *
4236344 TGGCTTAGGCGTACGGAGTTCATTCCCAATCTAAGATTGGATCAGACTGAGGTTTGCGGTAGTAG
703 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAG
* * * *
4236409 GATTGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGG
768 GATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
*
4236474 CTGAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATAC-GAAGTTCATTCCCAGTCTAAG
833 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAAG
4236538 CAT
897 CAT
* * * * * *
4236541 ACGGAGTTCATTCACAGTCCAAGTTCGGACCGGACGGAGGTTTGCGGCAGCACATGCTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* *
4236606 GACATGTGCTGGTGCCTCATTTTTCTTCG-CTGGGGCACCATCGCCGGAGCATCGTCGGAGAACC
66 GGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGTCGGAGAACC
* * * * *
4236670 TAACCGGTGGCATTGCGGTTCC-AGCGATCGGGGGGGCCAGGGAGTGTGCGCACATGATGTGCGA
130 TGACCGGCGGCATTGGGGTTCCGA-CGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* *
4236734 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCGAGAGCTCACACC
193 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
4236799 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAAATGGT
258 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
4236864 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTACGC
323 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
* * ** * * * *
4236929 ATGCCAGCAAAAATACAAGGATCATGTCTAAAAATTTTGGGGCCAAAACTCCTTCCGAAAATATT
388 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATT
* * * * *
4236994 TT-AAAAATCCCGAACCGCAGAAAGTTTCCAAAATTGTGAAAAATAGAAAATGAGTCGTCTTGCC
453 TTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
4237058 ATGAAACTTCACGTGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
518 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
4237123 GCATGA-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
583 GCA-CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * *
4237187 TCCCATCTCTCTGGCCAGCGTAATGCCCACCCGCCCATCAGCCCGTTCGTTTCATCAGTTAGCTT
647 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC--C-GCCCGCTCGTTTCATCAGTTGGCTT
* * * ** *
4237252 AGGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAGGGTTGCAGCAGCAAGATCGA
709 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGA
* * * * *
4237317 CAGCACACAGAGGGGGA-CCTAGCCGATCCCCGGCTTGCGCATCCCACCCCTTTGGTCGGCTGAG
774 CAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * * *
4237381 GGCCCGCACGCTCGTTTTGTGTGTTGAGTTAGGCATACGGAGTTCATTCCTAGTCTAAGCAT
838 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAT
** * * * ** * * *
4237443 ATAGAGTTCATTCCCAATTTAAAATTGGCCCGGACCGAGGGTTACGGCAGCCCATGCTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
** * * * **
4237508 ACCATGTGCTGGTGCCGCTTTTTTCTTTGTCGGGGCACCATCGCGGGAGCATCACCGGAGAACCT
66 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
* * * *
4237573 GACCGGCGGCATTTGGGTTTCGACGAT--------CGGGGGGTGTGCGCACATGATGTGTGATGT
131 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
*
4237630 GTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
196 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
4237695 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
261 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * **
4237760 ACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAATTTTTAGCTGAATTTTTTCGTGCATG
326 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATG
*
4237825 CCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTA
391 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTA
* * * *
4237890 AAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG-GATCGTCTTGGCAT
456 AAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAG-TCGTCTTGCCAT
* * * *
4237954 GAAACTACATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAACTGCCATTGGC
520 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*
4238019 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
585 ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
4238084 CGTCTCTCTAGCCGGCGTAGTGCCCGCCTG-CCCGCCTGCTCGTTTCATCAGTTGGCTTAGGTAT
650 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCAT
* * * ** * * *
4238148 ACAGAGTTCATTCTCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATTGGCAACAC
715 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCAC
* * * *
4238213 GCAGAGGGGGGCCCGAACGATCCCCGGCTTGGGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGT
780 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * * *
4238278 AAGCTCATTTCGTGGGTTGACATAGCCATACAGAGTTCATTCCCAGTCTAAGCAT
845 ACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAT
* * * * *
4238333 ACGGAGTTCATTCCCAGTCTAAGATAAGACCGGACCAACGGATGCGGCAGCACATGCTGGGCTAG
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
** *
4238398 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCAGAGCATCGTCGGAGAACCT
66 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
**
4238463 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGCTGTGCATACATGATGTGCGAT
131 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGG-TGTGCGCACATGATGTGCGAT
* *
4238528 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTCTAGAACTCACA-CC
194 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
4238592 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TGGAAATGGG
259 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGG
*
4238656 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTATGC
323 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
* * * *
4238721 ATGCTAACAAAAGTACAGGGATCACGCCTACCAAGTTTGGGGCCAAAAATCCTTCT-AAAACAAT
388 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAA-AAT
* * * *
4238785 TTTAAAAAATCCCGAACGGGAAAAATTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
452 TTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
4238850 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
517 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
4238915 GGCACACAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCATGGCTTGTGCA
582 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * *
4238980 TCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCCCGCCCACCCGTCCGCTCATTTCGTCGGT
647 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCCCG------C--CCGCTCGTTTCATCAGT
*
4239045 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAGCAG
703 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAG
* * * * * *
4239110 GATCGGCAGCATGTAGAGGGGGACTCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCAG
768 GATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
4239175 CTGAGCGCCTGCACGCTCGTTTCGTAGGCTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGC
833 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
4239240 AT
898 AT
* * * * *
4239242 ACGGAGTCCTTTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGC
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC
4239293 GCATTCGAGA
Statistics
Matches: 2401, Mismatches: 310, Indels: 82
0.86 0.11 0.03
Matches are distributed among these distances:
890 306 0.13
891 4 0.00
893 268 0.11
894 200 0.08
898 6 0.00
899 390 0.16
900 77 0.03
901 9 0.00
902 311 0.13
903 4 0.00
905 1 0.00
906 191 0.08
907 259 0.11
908 8 0.00
909 361 0.15
910 6 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTA
AAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACG
CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAT
Found at i:4239248 original size:26 final size:26
Alignment explanation
Indices: 4239212--4239264 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
4239202 GCTGACTTAG
*
4239212 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTCCATTCCCAATCTAA
* * *
4239238 GCATACGGAGTCCTTTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAATCTAA
4239264 G
1 G
4239265 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAATCTAA
Found at i:4240781 original size:26 final size:26
Alignment explanation
Indices: 4240744--4240796 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
4240734 GTTGACTTAG
*
4240744 GCATACGGAGTTCATTCAC-AGTCTAA
1 GCATACGAAGTTCATTC-CTAGTCTAA
4240770 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
4240796 G
1 G
4240797 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:4241090 original size:885 final size:875
Alignment explanation
Indices: 4239293--4247507 Score: 4922
Period size: 848 Copynumber: 9.4 Consensus size: 875
4239283 TTGCGGCAGC
*
4239293 GCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAGTTTTT
1 GCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
4239358 TCAAAAT-GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTGTACATGCCAACA
66 TC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
*
4239422 AAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
130 AAAATACAAGGATCACGTCTACCAAGTTTGGG-CCAAAAATCCTTCCGAAAAAATTTTAAAAAAT
* ** * * *
4239487 CCCGAACCGT-AGAAAGTTTCAAAAATGGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACT
194 CCCGAACC-TCAAAAAGTTTCAAAAATCATG------AAAAAATGAATCATCTTGCCATGAAACT
* * *
4239551 TCACGTGAAGGCTTAAGGGACCGTTGTATTAATTTACAAGCCATAAAAATGGCATTGGCGA-GCA
252 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGC-ATGCA
* * *
4239615 GAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCAGGGCTTGTGCATCTCGTCT
316 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCT
* * * *
4239680 CTCTGGCTGGCGT--A----GT------GCCCGCCCTCTCATTTCGTCGGTTGGCTTAGGTATAC
381 CTCTGGCCGGCGTAGAGCCCGTCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGCTATAC
* * * ** * *
4239733 AGAGTTCATTCCTATTCTAAGATCAGACCAAACTGAGGGTTACGGCAGCAGGATTGGCAACACGC
446 GGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC---A---GC-ACA---
* * * * * * *
4239798 TGATGGGGACCCGACCGATGCCCGACTTTCGCATCTCGCCCCTCTGGCCTGCTGAGCGCCCTCAC
501 -GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCAC
*
4239863 GCTC----GT--TT--C----G--T--GG-GTT-A---AC--T-TAGGCATACGAAGTTCATTCC
565 GCTCGTTTGTGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAAGCATACGAAGTTCATTCC
* * * *
4239904 CAGTCTAAGATCAGATCGGACCGAGGGTTATGGCAGCACATCCCGGGCTCGGCCATGTGCTGGTG
630 CAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * * *
4239969 CCAT-ATTTTTCTTCCTCGGGGCAGCATCGTTAGAGGATCGCTGGAGAACCTTACTGGCGGCATT
695 CC-TCATTTTTCTTCGTCGGAGCA-CA-CG--CGAGCATCGCCGGAGAACCTGAC-GGC-GCATT
* * * * *
4240033 GGAGTTCTGACGATCGGGGGGCCGAGTGGTGTACGCACATGATGTCCGATGGGAGCTGGTACTTG
753 GGAGTTCTGACGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTCCGATGGGTGCTGGTACTTG
*
4240098 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCATAAAGA
818 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC-TAAAGA
* * *
4240157 GCAATCGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGCGGACACTTTTT
1 GCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * *
4240222 TCAAATGATCACAAAATCTTGTACACTTCGATTTTTTAGTTGAATTTTTTTTTGCATGCCAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
**
4240287 AAATACAAGGATCGTGTCTACCAAGTTTAGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATC
131 AAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATC
*
4240352 CCGAACCTCAAAAAGTTTCAAAAATCATGAAAAAATGACTCATCTTGCCATGAAACTTCACGTGA
195 CCGAACCTCAAAAAGTTTCAAAAATCATGAAAAAATGAATCATCTTGCCATGAAACTTCACGTGA
* *
4240417 AGGCTTAAGGGACCATTGTACGAATTCACAAGGCATAAAAATGGCATTGGCATGCAGAAATATGA
260 AGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATGCAGAAATATGA
* *
4240482 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTTGCCTCTCTGGCCG
325 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCG
* *
4240547 GCGTAGAGCCCGTCCGCCCGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGCTATATGGAGTTCAT
390 GCGTAGAGCCCGTCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGCTATACGGAGTTCAT
4240612 TCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCA-CACAGAGGGGGACCCGACCGATC
455 TCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGCACAGAGGGGGACCCGACCGATC
* * * *
4240676 CCCGGCTTGCGGATCCCGCCCTTTTGGCCAGCTGAGCGCCCGCAGGCTCGTTTGGTGGGTTGACT
520 CCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTT-GT-GGTTGACT
*
4240741 TAGGCATACGGAGTTCATTCACAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCG
583 TAGGCATACGGAGTTCATTCACAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCG
*
4240806 GACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTCG
648 GACCGAGGGTTATGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTCG
* * *
4240871 GAGCACCACCGCCGGAGCATCGCCGGAGAACCTGATCGGCAGCATTGGGGTTCTGGCAATCGGGG
713 GAGCA-CA-CG-C-GAGCATCGCCGGAGAACCTGA-CGGC-GCATTGGAGTTCTGACGATC-GGG
* *
4240936 GGGCTGGGGGGTGTGCGCACTTGATGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCACCC
771 GGGCTGGGGGGTGTGCGCACATGATGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
4241001 TATCCCTCATCAAACCTCGAGAACACACACCCCCTTAAAGA
836 TATCCCTCATCAAACCTCGAGAACTCACACCCCC-TAAAGA
*
4241042 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
1 GCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
4241107 TCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCCGAATTTTTTTGTGCATGCCAAAAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
*
4241172 AAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATC
131 AAATACAAGGATCACGTCTACCAAG-TTTGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATC
** * * *
4241237 ATGAACCGCAAAAAGTTTCAAAAATTATG-AAAAATAGAAAACGAGTCGCTTTGCCATGAAACTT
195 CCGAACCTCAAAAAGTTTCAAAAATCATGAAAAAAT-G-AATC-A-T--C-TTGCCATGAAACTT
** *
4241301 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATCTCATTGGCATGCAAA
253 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATGCAGA
* * * * *
4241366 AATATGAAGATGTGCCAAAACCCACCTACAACCCTATCGATCCACAGCTTGCGCAACCCGTCTCT
318 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCT
* * * * *
4241431 CTGGACGACGTAGTGCCCG-CTCGCCCGCCCGCCCGCTTGTTCCGTCGGTTGGCTTAGGC-ATAC
383 CTGGCCGGCGTAGAGCCCGTC-CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA-GCTATAC
* * * *
4241494 GGAGTTCATTCCCAGTCCAAGATCAGACAGGATCGAGGGTTGCGGTAGCAGGATTGACAGCACGC
446 GGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGC-G--GC---A--G-CAGCA--C
* * * ** *
4241559 AGAGGGGGACTC-AGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCACCCGCA
500 AGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCA
* * * *
4241623 CGCTCGTTTCGTGGCTTGACTTAGGCATACCGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
564 CGCTCGTTT-GTGG-TTGACTTAGGCATACGGAGTTCATTCACAGTCTAAGCATACGAAGTTCAT
* * * ** *
4241688 TCCCAGTCTAAGAACAGACCAGACCGAGAGTTACAGCAGCATATGCTGGGCTCGGGCATGTGCTG
627 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * *
4241753 GTG-CTGCATTTTTCTTAGT-TGAG-----GC-ACCATCGCC---G-----GAC-G-GCATTGGT
692 GTGCCT-CATTTTTCTTCGTCGGAGCACACGCGAGCATCGCCGGAGAACCTGACGGCGCATTGGA
* * *
4241800 GTTCCGATGATCAGGGGGGCT-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
756 GTTCTGACGATC-GGGGGGCTGGGGGGTGTGCGCACATGATGTCCGATGGGTGCTGGTACTTGGC
* *
4241864 CCTTATCTTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCACAGCCCCCTAAAGA
820 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCCTAAAGA
* * *
4241921 GCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAATGTCTGAAATGGGGACACTTTTT
1 GCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * *
4241986 TCAAATGGTCACAAAATCTGGTACACTTAGAGTTTTTAGCTGAATTCTTTTATGCATGCCAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * ** *** ***
4242051 AAAT--GA-GA-CA--TCTTCCCA---T--G----AAA--CTTCACG-TGAAGGCTTAAGGGA--
131 AAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAATCCTTC-CGAAAAAATTTTAAAAAATC
** * ** * * *
4242096 CC--A-CTGCATGAA-TTT-ACAAGCCAT--AAAAATG--GCAT-TGGCACGTAGAAA--T-A--
195 CCGAACCT-CAAAAAGTTTCAAAAATCATGAAAAAATGAATCATCTTGC-CAT-GAAACTTCACG
* * * * *** ** * ** *** * *
4242146 TGAA-G---ATGTGCCCA---AACCCACCTACCACCCTATCGATCCATGGC-TTGCGCATCCCGT
257 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGC-AT--AAAAATGGCATTG-GCATGCAG-
*** * * ** * ** * * ***
4242203 CTCTCTG--GCTG-G-CTAGTGCCCGCCCGCC-CGTTCGTTTCG-TCGGTTGGCTTAG-GCATAC
317 AAATATGAAGATGTGCCTA-AACCCACCTACCAC---CCTATCGATC-CACGGCTT-GCGCAT-C
** * * * * *** * * *
4242261 AGAGT-TCATTCT--CAGTC-TA-AGATCAGATCAAACTG--AG---G---G-TT-GT-GG-TAG
375 -TCGTCTC--TCTGGCCGGCGTAGAG-CCCG-TCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * ** * ** * *
4242309 C--AG-GAT-C-GA---CA---GC-A-C---G-T-AGAGGGGGA-CGCGGG-TGACCCCCGGCTT
435 CTTAGCTATACGGAGTTCATTCCCAATCTAAGATCAGA-CCGGACCGAGGGTTG--CGGCAGC-A
* **** ** * * * * * * * *** ** * *
4242354 GCGC--ATCCCG-CCCCTCTGGTCGGCCGAGCATCCGCA-CACTCATTTCGTGGGTTAACTTAGA
496 GCACAGAGGGGGACCCGACCGATC-CCCG-GCTTGCGCATCCCGCCCCTC-T-GGCCAGCTGAG-
*** * * * **** * ** *
4242415 CATACGGA-GTTCATTCACAG-T--C-TAAGCATACAAAG-TCATT--C--T-T-AG--T-CTAA
556 CGCCCGCACGCTCGTTTGTGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAAGCATACGAA
* ** * * *
4242465 G-A---------TC--AGATC--A---GACCGAGGGTTGCGGTAGCACTTGCTGGGCTTGGGCAT
621 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCACATGCTGGGCTCGGGCAT
* * * *
4242513 GTGCTGGTGCCACATTTTTCTACGTCGGGGCTCCATCGTCGGAGCATCGCCGGAGAACCTGACCG
686 GTGCTGGTGCCTCATTTTTCTTCGTCGGAGC-ACA-CG-C-GAGCATCGCCGGAGAACCTGA-CG
* * ** * **
4242578 GCGGCGTTAGG-GTTCCGGTGATC-GGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGC
746 GC-GCATT-GGAGTTCTGACGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTCCGATGGGTGC
*
4242641 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCATAA
809 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC-TAA
4242706 AGA
873 AGA
* *
4242709 GCAATT-GAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGCGGACACTTTT
1 GC-ATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
4242773 TTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGGCATGCCAAC
65 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT-GCATGCCAAC
** * *
4242838 AAAAAATACAAGGATCACG-CTACCATCAAGTTTGGGGCC-AACCTCCTTCTGAAAAAA-TTAAA
129 -AAAAATACAAGGATCACGTCTA-C--CAAGTTT-GGGCCAAAAATCCTTCCGAAAAAATTTTAA
* * ** *
4242900 AAAATCCCAAAACCGCAAAAAGTTTC-AAAATCAATGAAAAATACAAAACGAGTCGTCTAGCCAT
189 AAAATCCC-GAACCTCAAAAAGTTTCAAAAATC-ATGAAAAA-ATGAATC-A-TC-T-T-GCCAT
* * * * *
4242964 AAAACTTCACGTGAAGGCCCTAAGGGACCATCGTATGTATTTACAAGGCAATAAAAATGGTTATT
246 GAAACTTCACGTGAAGG-CTTAAGGGACCATTGTATGAATTTACAAGGC-ATAAAAATGG-CATT
* * * * *
4243029 GACACGTAGAAATATGAAAGATGTGCCTTAAACCCACCCTAGCAACCCTATCGATCCACTGCTTG
308 GGCATGCAGAAATATG-AAGATGTGCC-TAAACCCA-CCTA-CCACCCTATCGATCCACGGCTTG
* * ** * *
4243094 CGGCATTCCCGTCTCTCCTGGCTGGCGT--AGTTC--CCGCCCGCCCGTCCGCTCATTTCGTCGG
369 C-GCA-TCTCGTCTCT-CTGGCCGGCGTAGAGCCCGTCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * * *
4243155 TTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCACCAGCA
431 TTGGCTTAGCTATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTT------GC-
* * * * *
4243220 GGATCGGCAGCACGCAGAGGGTGACCCGGCCGATCCCCGGCTTACGCATCTCGCCCCTCTGGCC-
489 GG--CAGCAGCA--CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCA
* *
4243284 GACTGAGCGCCCGTACTCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAA
550 G-CTGAGCGCCCGCACGCTCGTTT-GT-GGTTGACTTAGGCATAC---G----------------
* * * *
4243349 GCATACGGACTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGAC
593 G---A--G--TTCATTCACAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* * * * * ** *
4243414 CGAGGGTTACGGTAACACTTGCTGGGCTCGGGCATGTGCTGATGCCGT-ATTTTTCTTCACCGGG
651 CGAGGGTTATGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-TCATTTTTCTTCGTCGGA
* * * * * * *
4243478 GCACCATCACCGGAGCATGGTCGGAGAACTTGATCGACGACATTGGGGTT-TCGGCGATCGGGGG
715 GCA-CA-C-GC-GAGCATCGCCGGAGAACCTGA-CGGCG-CATTGGAGTTCT-GACGATC-GGGG
* * * ** *
4243542 GGCCGGGGGGTGTGTGCATATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCT
772 GGCTGGGGGGTGTGCGCACATGATGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
4243607 ATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAAA
837 ATCCCTCATCAAACCTCGAGAACTCACACCCC-CTAAAGA
* * *
4243647 GCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAATGTGTCTGAAATGGGGACA-TGTTT
1 GCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT-TTT
* *
4243711 TTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACA
65 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * * * *
4243776 AAAATACAAGGAGCACGGCTACAAAGTTTGGGGCTAAAACTCCTTCTGAAAAAA-TTT------T
130 AAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAAT
*
4243834 -----A----AAAAA---TC-----T--TG----AA-G--TC-TC--GCCATGAAACTTCACCTG
194 CCCGAACCTCAAAAAGTTTCAAAAATCATGAAAAAATGAATCATCTTGCCATGAAACTTCACGTG
* * * *
4243870 AAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCAAGCAGAAATATG
259 AAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATGCAGAAATATG
* *
4243935 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATC-CAGTCTCTCTGGT
324 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTC-GTCTCTCTGGC
** * * * * *
4243999 CGATGT--A----GT--GCCCGCCCGTCCGTTCGTTTCGACAGTTGGCATAGGC-ATACGGAGTT
388 CGGCGTAGAGCCCGTCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA-GCTATACGGAGTT
* * * * *
4244055 CATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGG
452 CATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC---A--G-CA-CA-G-AG-GGG
* ** * * *
4244120 GAACCCGGCCGATCCTTGGCTTGCGCATCCCACCCCTCTGGCCAGCTGAGTGCTCGCACGCTCGT
507 G-ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGT
* * * * *
4244185 TTCGTGCGTTGACGTAGGCATACAGAGTTCATTCCCAATCTAAGCATAC-AGAGTTCATTCTCAG
571 TT-GTG-GTTGACTTAGGCATACGGAGTTCATTCACAGTCTAAGCATACGA-AGTTCATTCCCAG
* *** * ** * * * * *
4244249 TCTAAGATCGGATTAGACAGAGGGTTGCGGCAACACTTGCTAGGCTCGGGCATATGCTGGTGCCG
633 TCTAAGATCAGACCGGACCGAGGGTTATGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCT
** * * *
4244314 CATTTTTCTTCACCGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGACCGACGGCATTTGG-
698 CATTTTTCTTCGTCGGAGCA-CA-CG-C-GAGCATCGCCGGAGAACCTGA-CGGC-GCA-TTGGA
** * * *
4244378 GTTAC-GGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGG
756 GTT-CTGACGATC-GGGGGGCTGGGGGGTGTGCGCACATGATGTCCGATGGGTGCTGGTACTTGG
* * **
4244442 CCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACGCCATTAAAGA
819 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC-CCCCTAAAGA
* * * * * * *
4244500 GTATTTGAGATTCTATAGGTTTTCTACTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
1 GCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
4244565 TGAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAA-AA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * * * *
4244629 AGAATACAAGGATTACGTCTACCTAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAACAT
131 A-AATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAAT
* * * ** * *
4244694 CCTGAAGCACAAAAAGTTTCAAAAATTGTG-AAAAATAGAAAACGAGTCATCTCGGCATGAAACT
194 CCCGAACCTCAAAAAGTTTCAAAAATCATGAAAAAAT-G---A--A-TCATCTTGCCATGAAACT
* * * *
4244758 TCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAA
252 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATGCAG
* * * * *
4244823 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCATACGCATCCACGGC-
317 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CTCGTCT
* * ** ** * * * * * * * ** * **
4244887 AT-AGGCATACGAAGTTCATTCCAAGTCTAAGATCAGACCAGACCG-AGGATT-GT-GG-CAGC-
381 CTCTGGC---CGGCGTAGA-GCC-CGTC--CG-CCCG-CCCGCCCGCTCGTTTCGTCGGTTGGCT
* * *** ** * *
4244946 AAG--AT-C-GA---CA---GC-A-CGT-AGAGGGGAACCCGGCAAATCCTTGGCTTGC-GCATC
437 TAGCTATACGGAGTTCATTCCCAATC-TAAGATCAG-A-CCGG---A-CCGAGGGTTGCGGCAGC
* ****** * * * *** *** *
4244997 -CCACCCCTCTGG-CCAG-CTGAGCGCCC-G-TAT--GC-T--CGTTTC-CTGGGTTGACTTAG-
495 AGCACAGAGGGGGACCCGACCGATC-CCCGGCT-TGCGCATCCCGCCCCTCTGGCCAG-CTGAGC
*** * ** ** * * * *
4245050 GCATACA-G--AGTTCAT--TCCCAATCTAAGCATACGAAGTTCATTCTCAGT-T-----T---A
557 GCCCGCACGCTCGTTTGTGGT-TGACT-TAGGCATACGGAGTTCATTCACAGTCTAAGCATACGA
** * *
4245101 AG---A-T--C-G-----GATC--A---GACCGAGGGTTGCGGCAGCACTTGCTGGGCTTGGGCA
620 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCACATGCTGGGCTCGGGCA
* ** * *
4245149 TGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGATC
685 TGTGCTGGTGCCTCATTTTTCTTCGTCGGAGCA-CA-CG-C-GAGCATCGCCGGAGAACCTGA-C
* * ** *
4245214 GGCGGCATTGGGGTTGC-GATGATCGGGGGTGCCAGGGGGTGTGCGCACATGATGTGCGATGGGT
745 GGC-GCATTGGAGTT-CTGACGATCGGGGG-GCTGGGGGGTGTGCGCACATGATGTCCGATGGGT
* *
4245278 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCGAGAACTCACACCCCTTT
807 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-CT
4245343 AAAGA
871 AAAGA
* *
4245348 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATTGGGGACACTTTTT
1 GCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * *
4245413 TCAAATGGTCACAAAATCTTGTACACTTTGAGTGTTTAGCTGAATTTTTTTGTGCAAGCCAAAAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
** * * *
4245478 AAATACAAGGATCATATCTACCAAGTTTGGGGTCAAAACTCCTTCTGAAAAAATTTTAAAAAATC
131 AAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATC
*** * * * * *
4245543 ATTAA-CTATAAAAAGTTTCAAAAATCTTG-AAAAATAGAAAACGGGTCGTCTTGCGACGAAACT
195 CCGAACCT-CAAAAAGTTTCAAAAATCATGAAAAAAT-G--AA----TCATCTTGCCATGAAACT
* * *
4245606 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCCG
252 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATGCAG
* * *
4245671 AAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTC
317 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTC
* * * * *
4245736 TTTGGCCGGCGTAGTGCCCTTTCGCCCGCCCGCCCGCCAGCTCATTTCGTCGGTTGGCTTAGGC-
382 TCTGGCCGGCGTAGAG-CC---CGTCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA-GCT
** * * ** *
4245800 ATACGGAGTTCATTCGTACTCTAAGATCAGACCAGATTGAGGGTTGCGACAGTAGGATCCGTAGC
442 ATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCG---GCA-G---C--AGC
* * ** * * * *
4245865 ACGTAGAGGGGGTCTCGACTAATCCCCGGCTTGCGTATCCCGCCCCTCTGGCCAGCAGAGCACCT
498 AC--AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCC
* * *
4245930 GCACGCTCGTTTCGTGGGTTAACTTAGGCATACTGAGTTCATTCCCAGTCTAAGCATAC-AGAGT
561 GCACGCTCGTTT-GT-GGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAAGCATACGA-AGT
* * * * ** * *
4245994 TCATTCCCAGTCTAAGATCGGATCGGATCAAGGGTTGCGGCAGCACATGCTAGGCTCAGGCATGT
623 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCACATGCTGGGCTCGGGCATGT
* ** * **
4246059 GCCTGGTGCCGCATTTTTCTTCACCAGG-GCACCATCGCCAGTGCATCGGTGGAGAACCTGACCG
688 G-CTGGTGCCTCATTTTTCTTCGTC-GGAGCA-CA-CG-C-GAGCATCGCCGGAGAACCTGA-CG
* * * * * * *
4246123 GTGGCATTGGGGTTC-CAGTGATCGGGGGTGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTG
746 G-CGCATTGGAGTTCTGA-CGATCGGGGG-GCTGGGGGGTGTGCGCACATGATGTCCGATGGGTG
* ** *
4246187 CGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCTTTC
808 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC-CCCTA
4246252 AAGA
872 AAGA
* * * * * *
4246256 GCATTAGAGATTTTACAGGTTTGC-GACCAGTAGCAATTAATGTGTATGGAATGAGGACACTTTT
1 GCATTCGAGATTTTACAGGTTTGCTG-CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
4246320 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTT-TGCATGCCAAC
65 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAAC
*
4246384 AAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAAT
129 AAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAAT
* * * *
4246449 CTCGAACCACAAAAGGTTTCAAAAATCATG-AAAAATAGAAAACAAGTCGTATTGCCATGAAACT
194 CCCGAACCTCAAAAAGTTTCAAAAATCATGAAAAAAT-G-AATC-A-TC---TTGCCATGAAACT
* *
4246513 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAG
252 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATGCAG
* * *
4246578 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGGCATTACGCA-AT--TC
317 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGGC-TTGCGCATCTCGTC
* ** ** * ** * * * * *
4246640 -CAC-GG-C--ATTAG-G-CAAT--------ACG-AAGTTC-ATTC-CCAG-T--CTAAG--AT-
380 TCTCTGGCCGGCGTAGAGCCCGTCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGCTATA
* * * * * * * * * ** *
4246681 C--AG---A---CCAGACCGAGGAT-TG--TGG-CAGCA-AGAT-CGACAGCA-CGTAGAGGGGA
445 CGGAGTTCATTCCCA-ATCTAAGATCAGACCGGACCG-AGGGTTGCGGCAGCAGCACAGAGGGGG
** ** * * *
4246731 ACCCGACAAATCCTTGGCTTGCGCATCCCACCCCTCTGGCCAGCTGAGCGCCCGTATGCTCGTTT
508 ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTT
* * * * * * *
4246796 CCTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCTCAGTTT
573 -GT-GGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAAGCATACGAAGTTCATTCCCAGTCT
* * * * * *
4246861 AAGATCGGATCAGACCGAGGG-T-TGCGCAAGCACTTGCTGGGCTTGGGCATGTGCTGGTGCCGC
636 AAGATCAGACCGGACCGAGGGTTATG-GC-AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTC
** * * *
4246924 ATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGATCGGCTGGCATTGGGG
699 ATTTTTCTTCGTCGGAGCA-CA-CG-C-GAGCATCGCCGGAGAACCTGA-CGGC--GCATTGGAG
* ** **
4246989 TTGC-GATGATCGGGGGTGCCAGGGGGTGTGCGCACATGCATGTGTGATGGGTGCTGGTACTTGG
757 TT-CTGACGATCGGGGG-GCTGGGGGGTGTGCGCACATG-ATGTCCGATGGGTGCTGGTACTTGG
4247053 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
819 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC-TAAAGA
* * * **
4247111 GCATGT-GAGATTTTACAGGTTTGCTGCCAGTAGCCATCAAAGTGTCTAAAATAGTTACACTTTT
1 GCAT-TCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
4247175 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAACA
65 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* *
4247240 AAAATAAAAGGATCACGTCTACCAAGTTTGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATC
130 AAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATC
* * * *
4247305 TCGAACCACAAAAGGTTTCAAAAATCATG-AAAAATAGAAAACAAGTCGTATTGCCATGAAACTT
195 CCGAACCTCAAAAAGTTTCAAAAATCATGAAAAAAT-G-AATC-A-TC---TTGCCATGAAACTT
* * *
4247369 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGTCATGTAGA
253 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATGCAGA
* * *
4247434 ATTATGAAGATGTGCCTAAACCCACCTACCAGCCTATTGATCCACGGCTTGCGCAT-TCCGTCTC
318 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCT-CGTCTC
4247498 TCTGGCCGGC
382 TCTGGCCGGC
4247508 ATGGTGCCCG
Statistics
Matches: 5858, Mismatches: 938, Indels: 1113
0.74 0.12 0.14
Matches are distributed among these distances:
766 51 0.01
767 3 0.00
769 1 0.00
771 4 0.00
773 2 0.00
774 1 0.00
775 1 0.00
777 8 0.00
780 1 0.00
783 2 0.00
784 1 0.00
785 2 0.00
786 3 0.00
787 13 0.00
788 196 0.03
789 28 0.00
790 9 0.00
792 6 0.00
793 12 0.00
794 3 0.00
795 2 0.00
796 7 0.00
797 9 0.00
798 11 0.00
799 13 0.00
800 6 0.00
801 4 0.00
804 1 0.00
806 1 0.00
807 3 0.00
808 13 0.00
809 11 0.00
810 3 0.00
813 6 0.00
814 7 0.00
815 3 0.00
817 4 0.00
818 3 0.00
820 1 0.00
821 3 0.00
822 2 0.00
823 3 0.00
824 5 0.00
825 2 0.00
826 6 0.00
827 3 0.00
828 2 0.00
829 5 0.00
830 2 0.00
833 1 0.00
834 16 0.00
835 17 0.00
836 13 0.00
837 43 0.01
838 17 0.00
839 6 0.00
840 22 0.00
841 17 0.00
842 7 0.00
843 4 0.00
844 9 0.00
845 7 0.00
846 13 0.00
847 23 0.00
848 540 0.09
849 10 0.00
850 5 0.00
851 3 0.00
852 9 0.00
853 471 0.08
854 225 0.04
855 430 0.07
856 12 0.00
857 10 0.00
858 216 0.04
859 9 0.00
860 5 0.00
861 18 0.00
862 6 0.00
863 14 0.00
864 199 0.03
865 6 0.00
866 9 0.00
867 8 0.00
868 12 0.00
869 12 0.00
870 85 0.01
871 6 0.00
872 7 0.00
873 13 0.00
874 21 0.00
875 16 0.00
876 29 0.00
877 19 0.00
878 15 0.00
879 384 0.07
880 46 0.01
881 26 0.00
882 8 0.00
883 24 0.00
884 160 0.03
885 315 0.05
886 34 0.01
887 8 0.00
888 11 0.00
889 12 0.00
890 21 0.00
891 233 0.04
892 41 0.01
893 23 0.00
894 11 0.00
895 131 0.02
896 7 0.00
897 8 0.00
898 3 0.00
899 9 0.00
900 9 0.00
901 6 0.00
902 15 0.00
903 184 0.03
904 8 0.00
905 6 0.00
906 6 0.00
907 218 0.04
908 311 0.05
909 21 0.00
910 10 0.00
911 6 0.00
912 2 0.00
914 1 0.00
915 1 0.00
916 4 0.00
918 1 0.00
919 8 0.00
923 1 0.00
929 3 0.00
931 5 0.00
933 1 0.00
934 11 0.00
935 22 0.00
936 117 0.02
937 17 0.00
938 206 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (875 bp):
GCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCC
CGAACCTCAAAAAGTTTCAAAAATCATGAAAAAATGAATCATCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATGCAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGG
CGTAGAGCCCGTCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGCTATACGGAGTTCATT
CCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGCACAGAGGGGGACCCGACCGATCC
CCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTGTGGTTGACTTAG
GCATACGGAGTTCATTCACAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGAC
CGAGGGTTATGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGAG
CACACGCGAGCATCGCCGGAGAACCTGACGGCGCATTGGAGTTCTGACGATCGGGGGGCTGGGGG
GTGTGCGCACATGATGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
CAAACCTCGAGAACTCACACCCCCTAAAGA
Found at i:4243362 original size:26 final size:26
Alignment explanation
Indices: 4243323--4243401 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
4243313 GTTGACTTAG
* *
4243323 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
4243349 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4243375 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4243401 G
1 G
4243402 ATCAAACTGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4244238 original size:26 final size:26
Alignment explanation
Indices: 4244202--4244254 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4244192 GTTGACGTAG
4244202 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
4244228 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
4244254 G
1 G
4244255 ATCGGATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:4245993 original size:26 final size:26
Alignment explanation
Indices: 4245957--4246009 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4245947 GTTAACTTAG
*
4245957 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4245983 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4246009 G
1 G
4246010 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4247651 original size:26 final size:26
Alignment explanation
Indices: 4247615--4247665 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4247605 GTTCACTTAG
4247615 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
4247641 GCATTCGGAGTTCATTTCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
4247666 GGATCGAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4249432 original size:26 final size:26
Alignment explanation
Indices: 4249396--4249448 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4249386 GTTGACTTAG
4249396 GCATATGGAGTCCATTCCCAATCTAA
1 GCATATGGAGTCCATTCCCAATCTAA
* *
4249422 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTCCATTCCCAATCTAA
4249448 G
1 G
4249449 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTCCATTCCCAATCTAA
Found at i:4252967 original size:26 final size:26
Alignment explanation
Indices: 4252917--4252969 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
4252907 GTTGCCTTAG
*
4252917 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCACTCTAA
4252943 GCATACAGAGTTCA-TTCCAACTCTAA
1 GCATACAGAGTTCATTTCC-ACTCTAA
4252969 G
1 G
4252970 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCACTCTAA
Found at i:4253739 original size:901 final size:897
Alignment explanation
Indices: 4250379--4255540 Score: 6663
Period size: 901 Copynumber: 5.8 Consensus size: 897
4250369 CTGCCATCAC
* ** * * *
4250379 CGGAGCATCGTCGGAGAACCTGATCGGTGGCATAGGGGTTCCGACGATC-GGGGGGCC-GGGGGG
1 CGGAGCATCGTCGGAGAACCTGACCGACGGAATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGG
* *
4250442 TGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATC
66 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATC
* * * * * *
4250506 AAACCTCGAGAACTCACACCCCCTTAAAGTGTATTTGAGATTTTACAGGATTGCTGCCAATTGCC
131 AAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
** *
4250571 ATTAAAGTGTCTGAAATGGAAACACTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTT
196 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
4250636 TTAGCTGAATGTTTTTGTACATGCCAACAAAAATAC-AA-GGATCACGTCTACCAAGTTTGGGGC
261 TTAGCTGAATTTTTTTGTGCATGCCAA-AAAAA-ACAAAGGGATCACGTCTACCAAGTTTGGGGC
* * * * *
4250699 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAATCGTAAAAAGTTTCAAAAATCATGAAAA
324 CAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* *
4250764 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTT
389 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTT
* *
4250829 ACAAGCCATACAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
454 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
4250894 TATCGATCCATGGCTTGCG-ATTCCCGTCTCTCTAGCTGGCGTACTGCCCGCCCGCCCGCCCGCC
519 TATCGATCCATGGCTTGCGCA-TCCCGTCTCTCTGGCCGGTGTA--G--TGCCCGCCCGCCCG--
* * ** * * * *
4250958 CGCTCGTTTTGTCGACTGCCTTAGGCATACGGAGTTCCTTCCTAGTCTAAGATAGGACCGGA-CG
577 CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGATC-
** * * * *
4251022 GAGGGTTGCCGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCAGCCGATCCCCTGCTTGCGTAT
641 GAGGGTTGAGGTAGCAGGATTGGCAGCACGCAGAGGGGGA-CCAGCCGATCCCCGGCTTGCGCAT
* *
4251087 CCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
705 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
4251152 TCATTCCCAG--T---C-TA---AG---------A---T----T-GGACCGGACCGAGGGTTGCG
770 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG
** * * *
4251191 GTAGCTCATGCTGGGCTCGGGCATATGTTGGTGCGGCATTTTTCTTCGTCGGGGCACCATCGT
835 ACAGCACATGCTGGGCTCGGGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
* * * * * * *
4251254 CGGAGCATCGTCGGAGAACCTGACTGGCGAAATTGGGGTTCTGACGATCGGGAGGGTCGAGGGGG
1 CGGAGCATCGTCGGAGAACCTGACCGACGGAATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGG
* *
4251319 GTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCTCTATCCCTCAT
65 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCAT
* * *
4251384 CAAACCTCAAGAACTCACATCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
130 CAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
4251449 CATTACAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
195 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
*
4251514 TTTAGCTGAATTTTTTTGTTCATGCCAAAAAAATAC--AGGGATCACGTCTACCAAGTTTGGGGC
260 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA-ACAAAGGGATCACGTCTACCAAGTTTGGGGC
* * ** *
4251577 CAAAAATCCTTCCAAAAAAATTTT-AAAAATCTAGAACCGCAAAAA-TTTTGAAAATTGTGAAAA
324 CAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
4251640 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTT
389 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTT
* *
4251705 GCAAGCCATAAAAATGGCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCC
454 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* **
4251770 TATCGATCCATGGCTTGCGCTTCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCACCC
519 TATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCG------C
* * * *
4251835 GCTCATTTCGGCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATAGGATCAGATCGA
578 GCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGATCGA
*
4251900 GGGTTGCGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCC
643 GGGTTGAGGTAGCAGGATTGGCAGCACGCAGAGGGGGA-CCAGCCGATCCCCGGCTTGCGCATCC
* * * *
4251965 CGCCCCTCAGGCCGACTGAGCACCCGTACGCTCGTTTCGTGGGTTG-CTTTAGGCATACGGAGTT
707 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-TTAGGCATACGGAGTT
* * * *
4252029 CATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCCAAGATCGGACTGGACGGAGGGTTGCGA
771 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA
* * ** *
4252094 CAGC-CATGCTGGCCTCGGGCATATGCTGGTGCTGCATTTTTCTTCGTCAAGGCACCATCGC
836 CAGCACATGCTGGGCTCGGGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
* * ** *
4252155 CGTAGCATC-ACTGGAGAACCTGACCGACGGAATTGGGGTTCCGGTAATCAGGGGGGCCGGGGGG
1 CGGAGCATCGTC-GGAGAACCTGACCGACGGAATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGG
* *
4252219 G-GTGTGCACATGATGTTG-GATGGGTGCTGGTACTTGGACCTTCTATTGGCCCCCTATCCCTCA
65 GTGTGCGCACATGATG-TGCGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCA
* * *
4252282 TCAAACCTCAAGAAATCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAG
129 TCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
4252347 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTCGTACACTTCGACT
194 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * * *
4252412 TTTTAGCTGAATTTTTTTGTGCATG-CAAAAAAAATACAGGGATGACATCTACCAACTTTGGGGC
259 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAACAAAGGGATCACGTCTACCAAGTTTGGGGC
* * **
4252476 CAAAAGTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTTGAAAATCGTGAAAA
324 CAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* * *
4252541 ATAGAAAACTAGTCGTCTTGCCATGAAGCTTCACGTGAAGGCGTAA-GGGCCATTGTATGAATTT
389 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTT
* * * *
4252605 ACAAGCCATAAAAATGGCATTGGTATGCAGAAATATGAAGATGTGCCTAAGCGCACCTACCACCC
454 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
4252670 TATCGATCCACGGCTTGCGCTTCCCGTCTCTCTGGCC-GTCGTAGTGCCCGCCCGCCCGCCCGCC
519 TATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGT-GTAGT----GCCCGCCCGCCCG--
* * *
4252734 CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATAGGACCGGACCG
577 CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGATCG
* * * *
4252799 AGGGTTGCA-GCAGCAGGTTTGGCAGCACGCAGAGGGGGACTCAGCCGATCCCCGACTTGCACAT
642 AGGGTTG-AGGTAGCAGGATTGGCAGCACGCAGAGGGGGAC-CAGCCGATCCCCGGCTTGCGCAT
* *
4252863 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGCCTTAGGCATACAGAGT
705 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * * * *
4252928 TCATTTCCAGTCTAAGCATACAGAGTTCATTCCAACTCTAAGATTGGACCGGACCGAGGGTTGTG
770 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG
* * * * * *
4252993 GCAGCTCATGCTGGGCTCGGGCATATGCTGGTGCTGCATTTTTCTTTGTCGGGGAACCATCGC
835 ACAGCACATGCTGGGCTCGGGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
* * *
4253056 CGGAGCACCGCCGGAGAACCTGACCGACGGAATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGG
1 CGGAGCATCGTCGGAGAACCTGACCGACGGAATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGG
* *
4253121 TGTGCGCACATGATATGCGATAGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATC
66 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATC
*
4253186 AAACCTCTAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
131 AAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
4253251 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTCGTACACTTCGAGTTT
196 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
** *
4253316 TTAGCTGAATTTTTTTTGTGCATGGTAAAAAAAACAAAGGGATCACGTCTACCAAGTTTTGGGCC
261 TTAGCTGAA-TTTTTTTGTGCATGCCAAAAAAAACAAAGGGATCACGTCTACCAAGTTTGGGGCC
* *
4253381 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAA
325 AAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
4253446 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTA
390 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTA
* * *
4253511 CAAGCCATAAAAACGGCATTGGCACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCT
455 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * *
4253576 ACCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCTCGCCCGCCCGTCTGCTCA
520 ATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCG-C-GCTCA
* *
4253641 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTT
583 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGATCGAGGGTT
* * *
4253706 GAGGTAGCAGGATTGGCAGCATC-CAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCTGCC
648 GAGGTAGCAGGATTGGCAGCA-CGCAGAGGGGGACCAG-CCGATCCCCGGCTTGCGCATCCCGCC
* * *
4253770 CCTCTAGCCTGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
711 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * *
4253835 CCAGTCTAAGCATACGGAGTACATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCA
776 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCA
* ** *
4253900 CATGCTGGGCTCGAGCATATGCTGGTGCCGCATTTTTCTTCACCGGGGCACC-TTGT
841 CATGCTGGGCTCGGGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
* * * * *
4253956 CGGAGCATCATCAGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGAGGGGGCCGGGGGGG
1 CGGAGCATCGTCGGAGAACCTGACCGACGGAATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGG
* * ** *
4254021 TGTGCGCACATGATGTGCGATGGGTGGTGGTACTTGGCCCTTATATTTTCCCCCTATTCCTCATC
66 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATC
* * * *
4254086 AAACCT-TGAGAACTCA-ACCCCCTCAAAAAGCATTTGAGATTTTACAGGATTGCCGCCAGTAGC
131 AAACCTCT-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
4254149 CATTAAAGCGTCTGAAATGGGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
195 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
4254214 TTTAGGTGAATTTTTTTGTGCATGCCAACAAAAATAC-AA-GGATCACATCTACCAAGTTCGGGG
260 TTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAA-ACAAAGGGATCACGTCTACCAAGTTTGGGG
* * *
4254277 CCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAA
323 CCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAA
* * ** *
4254342 AATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAATTGACCATTGTATGAATT
388 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATT
* * * *
4254407 TACAAGCCATAAAAATGGCATTGGTATGCAGAAATATGAAGATGTGCCTAAACCCACCTATCACT
453 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * ** * *
4254472 CTATCGATCCATGGCTTGCGTATTCCGTCTCTCTGGCTGCCGTAGTGTCCGCCCG-CC-CGCTCG
518 CTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCGCTCA
* * * *
4254535 TTTCGTCAGTTGGGTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCGGATAGAGGGT
583 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACCAGATCGAGGGT
* * ** * * * * * *
4254599 TGCGGTAGTAGGATCAGCAACACGTAAATGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCC
647 TGAGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCAG-CCGATCCCCGGCTTGCGCATCCCGCC
** *
4254664 CCTCTGGCCGGCTGAGCGCCATCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
711 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* *
4254729 CCGGTCTAAG-AT-C-G-G---A-T--C-G-----GAT------GGA---A-GGTTGCGATAGCA
776 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCA
** * * *
4254768 CATTATGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCG-CAGGGGCACCATCAT
841 CATGCTGGGCTCGGGCATATGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGT
* * * * * *
4254825 CGGAGCATCGTCGGAGAACCTAATCGACGGCATTGGGGTTCCGGCGATCGGGGGGGTC-AGAGGG
1 CGGAGCATCGTCGGAGAACCTGACCGACGGAATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGG
* * *
4254889 TGTGCGCACATGATGTGCGATGGGTGCTGGTAGTTGGCCCTTATGTTGGCCCCCTATCCCTCATC
66 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATC
* *
4254954 AAACCT-TGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGC
131 AAACCTCT-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
4255018 CATTAAAGTGTCTGAATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTT
195 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * * *
4255083 TTTTGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA-GGATCATGTCTACCAAGTGTGGGGG
260 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAACA-AAGGGATCACGTCTACCAAGTTTGGGGC
* ** *
4255147 TAAATCTCCTT-CGAAAAAAATTTTAAAAAATC-CTGAACTGCAAAAAGTTTCAAAAATCGTGAA
324 CAAAAATCCTTCCG-AAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCGTGAA
* * *
4255210 AAATAGAAAATGAGTCGTATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
387 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAAT
** *
4255275 TTACAAGAAATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
452 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
4255340 CCTATCGATCCATGGCTTGCGCATCCCTTCTCTCTGGCC-ATCGTAGTGCCTGCCCG-CC-CGCT
517 CCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGT-GTAGTGCCCGCCCGCCCGCGCT
* * * * * *
4255402 CGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGATAGAGGG
581 CATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGATCGAGGG
** ** * * * *
4255467 TT-ATGGTAGTGGGATCAGCACCACGAAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCG
646 TTGA-GGTAGCAGGATTGGCAGCACGCAGAGGGGGA-CCAGCCGATCCCCGGCTTGCGCATCCCG
4255531 CCCCTCTGGC
709 CCCCTCTGGC
4255541 TTACGCATCG
Statistics
Matches: 3814, Mismatches: 393, Indels: 166
0.87 0.09 0.04
Matches are distributed among these distances:
867 2 0.00
868 143 0.04
869 548 0.14
870 3 0.00
872 15 0.00
874 1 0.00
875 43 0.01
876 360 0.09
877 20 0.01
878 111 0.03
879 158 0.04
881 1 0.00
882 2 0.00
883 1 0.00
884 1 0.00
885 2 0.00
886 1 0.00
887 1 0.00
890 1 0.00
891 1 0.00
892 1 0.00
893 3 0.00
894 183 0.05
895 1 0.00
897 3 0.00
898 269 0.07
899 373 0.10
900 515 0.14
901 557 0.15
902 214 0.06
903 14 0.00
904 148 0.04
905 116 0.03
906 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (897 bp):
CGGAGCATCGTCGGAGAACCTGACCGACGGAATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGG
TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATC
AAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAACAAAGGGATCACGTCTACCAAGTTTGGGGCCA
AAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
TCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCGCTCATTT
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGATCGAGGGTTGAG
GTAGCAGGATTGGCAGCACGCAGAGGGGGACCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCT
GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGC
TGGGCTCGGGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
Found at i:4253854 original size:26 final size:26
Alignment explanation
Indices: 4253818--4253870 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4253808 GTTGACTTAG
*
4253818 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
4253844 GCATACGGAGTACATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
4253870 G
1 G
4253871 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAGTCTAA
Found at i:4255521 original size:869 final size:876
Alignment explanation
Indices: 4247682--4255540 Score: 9089
Period size: 869 Copynumber: 8.9 Consensus size: 876
4247672 AACTGGACCA
* * * * * * ** *
4247682 AGGGTTGCGGCGGCACATGCTGGGCTCGAGAATGTGTTGGTGTTGCATTTTTTTTCGTCGGGGCA
1 AGGGTTGCGACAGCACATGCTGGGCTCGGGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * * * * *
4247747 CCATCGCCGGAGCATCGTCGGAGAACTTGATCGGCGGCATTGGGGTTCCGGCGATC-AGGGGGCC
66 CCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGAATTGGGGTTCCGACGATCGGGGGGGCC
* *
4247811 -GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGACCCTTATATTGGCCCCCTATC
131 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
4247875 CCTCATCAAACCTCGAGAACTCACACCTCCTTCAAGAGGATTAGAGATTTTACAGGTTTGC-GAC
196 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-C
* * * * *
4247939 CAGTAGCAATTAATGTGTATGGAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
260 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
4248004 TCGAGTTTTTAGCTGAATTTTTTTAG-GAATGCCATAAAAAATACAAGGATCACCTCTACCAAGT
325 TCGAGTTTTTAGCTGAATTTTTTT-GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
** ** * * * **
4248068 TTGGGGCTGAAACTCCTTCTAAAAAAATTTTAAAAGATCCCGAACCACAAAAAGTTTTGAAAATC
389 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATC
* *
4248133 GTGAAAAATAGAAAACGAG-CATC-TG-CATGAAACTTCCCGTGAA-GCTTAAGGGACCATTGTA
454 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * ** * *
4248194 TGAATTTACAATCCATAAAAATGACATTGGCACAAAAAAATATAAAGATGTGCCTAAACCCACCT
519 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * * *
4248259 ACCACCCTATCGATCCACGGCTTGCACTTCCCGTCTATCTGATTGGCGTAGTGCCCACCCGCTCG
584 ACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTG---GCCGTCGT----A---G-T-G
* * * ** *
4248324 CCCGCCTGCACGCTCGTTTTGTCATTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
637 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAG
* * ** * * * * * *
4248389 GACCAGACCAATGGTTGTTGCAGCAGGATTAGTAGAATGCAGAGGGGGACCCAACCGATCCCCGG
702 GACCAGACCGAGGGTTGCGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCAGCCGATCCCCGG
* * * * * *
4248454 CTTGCGCATCCCGCCCCACTGGCCGGTTGAGCACCCA-TACGTTCGTTTCGTGAGTTGACTTAGG
767 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC-GCCAGCACGCTCGTTTCGTGGGTTGACTTAGG
4248518 CATACGGAGTTCATTCCCAGTCTAAGCATGCGAAGTTCATTCCCAGTCTAGGATCGGACTGGACC
831 CATACGGAGTTCATTCCCAGTCT-A--A-GC--A--T-A----CAG---A-GATCGGA-TGGA-C
* * * * * * **
4248583 AAGGGTTGCGGCAGCACATGCTGGGCTCGGGAATGTGTTGGTGCTGCATTTTTTTTCACCGGGGC
1 -AGGGTTGCGACAGCACATGCTGGGCTCGGGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * *
4248648 ACCATCACCGGAGCATCATCGGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATC-GGGGGGC
65 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGAATTGGGGTTCCGACGATCGGGGGGGC
*
4248712 CGGGGGGGTGTGCGCACATGATGAGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
130 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
4248777 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGC
195 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
4248842 CAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGT
260 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * *
4248907 TCGAGTTTTTAGCTGAATTTGTTTGTGCAAGCCAAAAAAAATAAAAAGATCACGTCTACCAAGTT
325 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
* *
4248972 TGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGGAAAAAGTTTCAAAAATCG
390 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCG
* **
4249036 TGAAAAATAGAAAACGAATCGTCTTGCCATGAAACTTCACGTGATCGCTTAAGGGACCATTGTAT
455 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * *
4249101 GAATTTACAAGCCATAAAAATGGCATTGCCATGCAAAAATATGAAGATGTGCCTAAATCCACCTA
520 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* ** * *
4249166 CCACCCTATCGATCCACGGCTTGCGCATCCTATCTCTCTGGCCGGCATAGT----GCCCGCCCGC
585 CCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGTCGTAGTGCCCGCCCGCCCGC
* * * *
4249227 TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGATCGAGG
650 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGG
* *** *
4249292 GTTG-GGATAGTAGGATCAACAGCACGTAGA--GGG-----G--GA--CCCGGCTTGCGCATCCC
715 GTTGCGG-TAGCAGGATTGGCAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCC
* * * * * * *
4249345 GCCCCTCTGGTCGGCTAAGCGCCCGGACGCTCGTTCCGTGGGTTGACTTAGGCATATGGAGTCCA
779 GCCCCTCTGGCCGGCTGAGCGCCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
*
4249410 TTCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACC
844 TTCCCAGTCTAAGC------A--T-A----CAG----AGATCGGAT-GGA-C
* * * * * * *
4249462 GAAGGTTGC-AGCAGCACATGTTGGGATAGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGG
1 -AGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * ** * *
4249526 CACCATCGCCGGAGAATCGTCAGAGAACCTGACCAACGTCATT-AGGTTCCGGCGATC------G
64 CACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGAATTGGGGTTCCGACGATCGGGGGGG
*
4249584 --AGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
129 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
4249647 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
194 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * * * * *
4249712 CTAGTAGCAAGTAAAGTGTCTAAAATAGCGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
259 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
4249777 TTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGT
324 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
* *
4249842 TTGGGGCCAAAACTCCATT-C-AAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTC-AAAAT
389 TTGGGGCCAAAACTCC-TTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAAT
* * * *
4249904 CATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTCT
453 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
**
4249969 ATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACC
518 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * * *
4250034 TACCACCTTATCGACCCATGGCTTGCGTATCCCATCCCTCTGGCCGACGTAGTGCCCGCCCGCCC
583 TACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGTCGTAGTGCCCGCCCG--C
* *
4250099 ACCTGCCCATTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAAC
646 -CC-G--C--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGAC
* * * * ** * * * *
4250164 CGGACTGATGGTTGCGGTAGGAGGATCAGCAGCATGCAAAGGGGGACCC-GACCGATCCCTGGCC
705 CAGACCGAGGGTTGCGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCAG-CCGATCCCCGGCT
* * * * * * * *
4250228 TACGTA-CCACACCCCTCTGGCCGGTTGAGTGCCCGCACACTCGTTTCGTGGGTTAACTTAGGCA
769 TGCGCATCC-CGCCCCTCTGGCCGGCTGAGCGCCAGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * **
4250292 TACGAAGTTCATTCCCAGTCTAAG-AT-C-G-GATCGAACCG--
833 TACGGAGTTCATTCCCAGTCTAAGCATACAGAGATCGGATGGAC
* * *
4250330 AGGGTGGCGGCAGCACATGCTGGGCTCGGGC--A---T-GT-----A-----C-T-G-C--TG--
1 AGGGTTGCGACAGCACATGCTGGGCTCGGGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * ** * *
4250372 CCATCACCGGAGCATCGTCGGAGAACCTGATCGGTGGCATAGGGGTTCCGACGATC-GGGGGGCC
66 CCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGAATTGGGGTTCCGACGATCGGGGGGGCC
*
4250436 -GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATC
131 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
4250499 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGTGTATTTGAGATTTTACAGGATTGCTGCC
196 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * ** *
4250564 AATTGCCATTAAAGTGTCTGAAATGGAAACACTTTTTTCAAATGGTCACAAAAACTTGTACACTT
261 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
4250629 CGAGTTTTTAGCTGAATGTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
326 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* * * *
4250694 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAATCGTAAAAAGTTTCAAAAATCAT
391 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGT
*
4250759 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATG
456 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
4250824 AATTTACAAGCCATACAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
521 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* ** *
4250889 CACCCTATCGATCCATGGCTTGCG-ATTCCCGTCTCTCTAGCTGGCGTACTGCCCGCCCGCCCGC
586 CACCCTATCGATCCATGGCTTGCGCA-TCCCGTCTCTCT-G--GCCGT-C-G-TAG--TGCCCGC
* ** * * * *
4250953 CCGCCCGCTCGTTTTGTCGACTGCCTTAGGCATACGGAGTTCCTTCCTAGTCTAAGATAGGACCG
642 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCA
* * * * *
4251018 GACGGAGGGTTGCCGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCAGCCGATCCCCTGCTTGC
707 GACCGAGGGTTGCGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGC
* * * *
4251083 GTATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
772 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * **
4251148 GAGTTCATTCCCAGTCTAAG-AT--TG-GACCGGACCG--
837 GAGTTCATTCCCAGTCTAAGCATACAGAGATCGGATGGAC
** * * *
4251182 AGGGTTGCGGTAGCTCATGCTGGGCTCGGGCATATGTTGGTGCGGCATTTTTCTTCGTCGGGGCA
1 AGGGTTGCGACAGCACATGCTGGGCTCGGGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * * * * * *
4251247 CCATCGTCGGAGCATCGTCGGAGAACCTGACTGGCGAAATTGGGGTTCTGACGATCGGGAGGGTC
66 CCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGAATTGGGGTTCCGACGATCGGGGGGGCC
* * *
4251312 GAGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCTCTAT
131 G-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
4251377 CCCTCATCAAACCTCAAGAACTCACATCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGC
195 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
4251442 CAGTAGCCATTACAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
260 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
4251507 TCGAGTTTTTAGCTGAATTTTTTTGTTCATGCC-AAAAAAATACAGGGATCACGTCTACCAAGTT
325 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
* * * ** *
4251571 TGGGGCCAAAAATCCTTCCAAAAAAATTTT-AAAAATCTAGAACCGCAAAAA-TTTTGAAAATTG
390 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCG
*
4251634 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTAT
455 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
4251699 GAATTTGCAAGCCATAAAAATGGCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTA
520 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
4251764 CCACCCTATCGATCCATGGCTTGCGCTTCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGC
585 CCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGTCGTAGT----GCCCGCCCG-
* * * * *
4251829 CCACCCGCTCATTTCGGCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATAGGATCA
645 ---CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCA
*
4251894 GATCGAGGGTTGCGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGC
707 GACCGAGGGTTGCGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGC
* * * * *
4251959 GCATCCCGCCCCTCAGGCCGACTGAGCACCCGTACGCTCGTTTCGTGGGTTG-CTTTAGGCATAC
772 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCAGCACGCTCGTTTCGTGGGTTGAC-TTAGGCATAC
*
4252023 GGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCCAAGATCGGACTGGAC
836 GGAGTTCATTCCCAGTCTAAG----C--A--T-A----CAG----AGATCGGA-TGGAC
* * **
4252082 GGAGGGTTGCGACAGC-CATGCTGGCCTCGGGCATATGCTGGTGCTGCATTTTTCTTCGTCAAGG
1 --AGGGTTGCGACAGCACATGCTGGGCTCGGGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * *** *
4252146 CACCATCGCCGTAGCATC-ACTGGAGAACCTGACCGACGGAATTGGGGTTCCGGTAATCAGGGGG
64 CACCATCGCCGGAGCATCGTC-GGAGAACCTGACCGACGGAATTGGGGTTCCGACGATCGGGGGG
* * *
4252210 GCCGGGGGGG-GTGTGCACATGATGTTG-GATGGGTGCTGGTACTTGGACCTTCTATTGGCCCCC
128 GCCGGGGGGGTGTGCGCACATGATG-TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * *
4252273 TATCCCTCATCAAACCTCAAGAAATCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGC
192 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
4252338 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTCGTAC
257 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
4252403 ACTTCGACTTTTTAGCTGAATTTTTTTGTGCATG-CAAAAAAAATACAGGGATGACATCTACCAA
322 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * * **
4252467 CTTTGGGGCCAAAAGTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTTGAAAA
387 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAA
* * *
4252532 TCGTGAAAAATAGAAAACTAGTCGTCTTGCCATGAAGCTTCACGTGAAGGCGTAAGGG-CCATTG
452 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * *
4252596 TATGAATTTACAAGCCATAAAAATGGCATTGGTATGCAGAAATATGAAGATGTGCCTAAGCGCAC
517 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* *
4252661 CTACCACCCTATCGATCCACGGCTTGCGCTTCCCGTCTCTCTGGCCGTCGTAGTGCCCGCCCGCC
582 CTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGTCGTAGT--------GCC
* *
4252726 CGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATAGGA
639 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGA
* * * * * *
4252791 CCGGACCGAGGGTTGCAGCAGCAGGTTTGGCAGCACGCAGAGGGGGACTCAGCCGATCCCCGACT
704 CCAGACCGAGGGTTGCGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCT
* * *
4252856 TGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGCCTTAGGCAT
769 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCAGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * *
4252921 ACAGAGTTCATTTCCAGTCTAAGCATACAGAGTTCATTCCAACTCTAAGATTGGACCGGACC
834 ACGGAGTTCATTCCCAGTCTAAGCATACAGAG---------A-TC-------GGA-TGGA-C
* * * * * *
4252983 GAGGGTTGTGGCAGCTCATGCTGGGCTCGGGCATATGCTGGTGCTGCATTTTTCTTTGTCGGGGA
1 -AGGGTTGCGACAGCACATGCTGGGCTCGGGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* *
4253048 ACCATCGCCGGAGCACCGCCGGAGAACCTGACCGACGGAATTGGGGTTCCGACGATCGGGGGGGC
65 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGAATTGGGGTTCCGACGATCGGGGGGGC
* * *
4253113 CGGGGGGGTGTGCGCACATGATATGCGATAGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTAT
130 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
4253178 CCCTCATCAAACCTCTAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGC
195 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
4253243 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTCGTACACT
260 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
** *
4253308 TCGAGTTTTTAGCTGAATTTTTTTTGTGCATGGTAAAAAAAACA-AAGGGATCACGTCTACCAAG
325 TCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAAAAAAAATACAA-GGATCACGTCTACCAAG
*
4253372 TTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAAT
388 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAAT
* *
4253437 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGT
453 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
4253502 ATGAATTTACAAGCCATAAAAACGGCATTGGCACGTAGAAATATGAAGATGTACCTAAACCCACC
518 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * *
4253567 TACCACCCTACCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGT-GTAGTGCTCGCCCGCC
583 TACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCC-GTCGTAGTGCCCGCCCG-C
* *
4253631 CGTCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAG
646 C--C-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAG
* *
4253696 ACCGAGGGTTGAGGTAGCAGGATTGGCAGCATC-CAGAGGGGGACCC-GACTGATCCCCGGCTTG
708 ACCGAGGGTTGCGGTAGCAGGATTGGCAGCA-CGCAGAGGGGGACCCAG-CCGATCCCCGGCTTG
* * *
4253759 CGCATCCTGCCCCTCTAGCCTGCTGAGCGCCCA-CACGCTCGTTTCGTGGGTTGACTTAGGCATA
771 CGCATCCCGCCCCTCTGGCCGGCTGAGCG-CCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
*
4253823 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTACATTCCCAGTCTAAGATCAGACCAGACC
835 CGGAGTTCATTCCCAGTCTAAGCATAC--AG-AGA-T--C-G-----GAT--G----GA-C
* **
4253884 GAGGGTTGCGACAGCACATGCTGGGCTCGAGCATATGCTGGTGCCGCATTTTTCTTCACCGGGGC
1 -AGGGTTGCGACAGCACATGCTGGGCTCGGGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * * ** *
4253949 ACC-TTGTCGGAGCATCATCAGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGAGGGGGC
65 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGAATTGGGGTTCCGACGATCGGGGGGGC
* **
4254013 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGGTGGTACTTGGCCCTTATATTTTCCCCCTAT
130 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * * * *
4254078 TCCTCATCAAACCTTGAGAACTCA-ACCCCCTCAAAAAGCATTTGAGATTTTACAGGATTGCCGC
195 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
4254142 CAGTAGCCATTAAAGCGTCTGAAATGGGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACT
260 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
4254207 TCGAGTTTTTAGGTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTT
325 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
* * * * *
4254272 CGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTG
390 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCG
* * **
4254337 TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAATTGACCATTGTAT
455 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
4254402 GAATTTACAAGCCATAAAAATGGCATTGGTATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
520 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * * * *
4254467 TCACTCTATCGATCCATGGCTTGCGTATTCCGTCTCTCTGGCTGCCGTAGTGTCCGCCCGCCCGC
585 CCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGTCGTAGTGCCCGCCCGCCCGC
* * * **
4254532 TCGTTTCGTCAGTTGGGTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCGGATAGAG
650 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACCAGACCGAG
* ** * * * * *
4254596 GGTTGCGGTAGTAGGATCAGCAACACGTAAATGGGGACCC-GATCGATCCCCGGCTTGCGCATCC
714 GGTTGCGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCAG-CCGATCCCCGGCTTGCGCATCC
* *
4254660 CGCCCCTCTGGCCGGCTGAGCGCCATCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
778 CGCCCCTCTGGCCGGCTGAGCGCCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
*
4254725 ATTCCCGGTCTAAG-AT-C-G-GATCGGATGGA-
843 ATTCCCAGTCTAAGCATACAGAGATCGGATGGAC
* ** * *
4254754 A-GGTTGCGATAGCACATTATGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCG-CAGGGGC
1 AGGGTTGCGACAGCACATGCTGGGCTCGGGCATATGCTGGTGCCGCATTTTTCTTCGTC-GGGGC
** * * * * *
4254817 ACCATCATCGGAGCATCGTCGGAGAACCTAATCGACGGCATTGGGGTTCCGGCGATCGGGGGGGT
65 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGAATTGGGGTTCCGACGATCGGGGGGGC
* * * *
4254882 C-AGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAGTTGGCCCTTATGTTGGCCCCCTAT
130 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
4254946 CCCTCATCAAACCTTGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGC
195 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
4255011 CAGTAGCCATTAAAGTGTCTGAATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
260 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * *
4255076 TTGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTG
325 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
** * *
4255141 TGGGGGTAAATCTCCTT-CGAAAAAAATTTTAAAAAATC-CTGAACTGCAAAAAGTTTCAAAAAT
390 TGGGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAAT
* *
4255204 CGTGAAAAATAGAAAATGAGTCGTATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
453 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
** *
4255269 ATGAATTTACAAGAAATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
518 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * *
4255334 TACCACCCTATCGATCCATGGCTTGCGCATCCCTTCTCTCTGGCCATCGTAGTGCCTGCCCGCCC
583 TACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGTCGTAGTGCCCGCCCGCCC
* * * * **
4255399 GCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGATAGA
648 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGA
** ** ** * * * *
4255464 GGGTTATGGTAGTGGGATCAGCACCACGAAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCC
713 GGGTTGCGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCC
4255529 CGCCCCTCTGGC
778 CGCCCCTCTGGC
4255541 TTACGCATCG
Statistics
Matches: 6079, Mismatches: 677, Indels: 435
0.85 0.09 0.06
Matches are distributed among these distances:
844 32 0.01
845 12 0.00
846 1 0.00
848 1 0.00
849 3 0.00
850 203 0.03
851 88 0.01
852 375 0.06
853 4 0.00
854 2 0.00
855 3 0.00
856 3 0.00
857 4 0.00
858 4 0.00
860 9 0.00
861 2 0.00
862 1 0.00
863 1 0.00
867 25 0.00
868 139 0.02
869 561 0.09
870 170 0.03
871 295 0.05
872 20 0.00
873 5 0.00
874 5 0.00
875 51 0.01
876 362 0.06
877 21 0.00
878 130 0.02
879 346 0.06
880 2 0.00
881 2 0.00
882 81 0.01
883 6 0.00
884 5 0.00
885 1 0.00
886 2 0.00
887 4 0.00
888 4 0.00
889 2 0.00
890 83 0.01
891 4 0.00
892 6 0.00
893 83 0.01
894 181 0.03
895 4 0.00
896 4 0.00
897 19 0.00
898 270 0.04
899 376 0.06
900 487 0.08
901 523 0.09
902 384 0.06
903 273 0.04
904 153 0.03
905 129 0.02
906 113 0.02
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (876 bp):
AGGGTTGCGACAGCACATGCTGGGCTCGGGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
CCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGAATTGGGGTTCCGACGATCGGGGGGGCC
GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGT
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGTCGTAGTGCCCGCCCGCCCGCT
CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGG
TTGCGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGC
CCCTCTGGCCGGCTGAGCGCCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
CCCAGTCTAAGCATACAGAGATCGGATGGAC
Found at i:4256322 original size:26 final size:26
Alignment explanation
Indices: 4256292--4256344 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4256282 GTTGCCTTAG
*
4256292 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4256318 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4256344 G
1 G
4256345 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4258784 original size:26 final size:26
Alignment explanation
Indices: 4258744--4258796 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4258734 GTTGACTTAG
* *
4258744 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
4258770 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
4258796 G
1 G
4258797 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:4259403 original size:889 final size:882
Alignment explanation
Indices: 4257013--4259534 Score: 3218
Period size: 876 Copynumber: 2.8 Consensus size: 882
4257003 TCATTCTCGA
* * * *
4257013 TCTAAGATCGGACCGGA-CGGAGGGGTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
1 TCTAAGATCAGACCGGATC-GAGGGATACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCC
* ** * * * * * *
4257077 ACATTTTTCTTGGCCAGGGCACCATCGTCAGAGTATCGCCGGAAAACCTAACTGGCAGCATTGGG
65 GCATTTTTCTTCACC-GGG----A----CA-A-CATCGCCAGAAAACCTGACCGACAACATT-GG
** * * *
4257142 GTTCCGGTGATCGGGGGTGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGG
118 CATCCAGTGATTGGGGGAG-CGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGG
* * *
4257207 CCCTTATCTTGGCCCCCTATCCCTCATCAAAACTCTAGAACTCACACCCCCTTAAAGAGCTTTTG
182 CCCTTATATTGGCCCCCTATCCCTCATCAAACCT-TAGAACTCACACCCCCTTAAAGAGCATTTG
* *
4257272 AGATTTTATAGGTTTGCTGCCAGTAGCCATT-AAGTGTCAGAAATGGGGACACTTTTTTCAAATG
246 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
4257336 GTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTATG-CATGCCAAAAAAAATAC
311 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTTTGTCATGCCAACAAAAATAC
* *
4257400 AAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATCCGAAAAAATTTTAAAAAATCCCGAAC
375 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TCTGAAAAAATTTTAAAAAATCCCGAAC
4257465 CGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
439 CGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * *
4257530 AGGCTTAAGGCACAATTGTATGAATTTACAAGCCGTAAAAATGGCATTGGCATGCAGAAATATGA
504 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* * *
4257595 AGATCTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCTGTCTCTCTGGCCG
569 AGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
*
4257660 GCGTAGTGCCCGCCCGCCCGCCCCTGACTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATT
634 GCGTAGTG--CGCCCGCCCG-CCC-G-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * *
4257725 CCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGTAGCAGGATCGATAGCACGCAGAGGGGAAC
694 CCCAGTCTAAGATAGGACCGGAC-GAGGGTTGCGGCAGCAGGATCGATAGCACGCAGAGGGGAAC
* * *
4257790 CCGACCTATCCCCGGCTTACACATCCCACCCCTTTGGCCGGCTGAGCGCCCACACGCTCGTTTCG
758 CCGACCGATCCCCGGCTTACACATCCCACCCCTCTGGCCGACTGAGCGCCCACACGCTCGTTTCG
* * * *
4257855 TGGGTTGACTTAAGCATATGGAGTTCATTTCCATTCTAAGCATACAAAGTTCATTCCCAG
823 TGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACAAAGATCATTCCCAG
* * *
4257915 TCTAAGATCAGACCGGATCGAGGGATACGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCG
1 TCTAAGATCAGACCGGATCGAGGGATACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCG
* * ** *
4257980 CATTTTTCTTCACCGGGGCACCATCGTTAGAAAACCTGACCGACAGCATTGGCATTCCAGTGATT
66 CATTTTTCTTCACCGGGACAACATCGCCAGAAAACCTGACCGACAACATTGGCA-TCCAGTGATT
* * * **
4258045 GGGGGGGCCGGGGGGTGTGCGCACATGATATACGATGGGTGCTGGTACTTGGCCCTTATATTGGC
130 GGGGGAGCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
4258110 CCCCTATCCCTCATCAAACCTCAAGAACTCGCA--CCCTT-AAG-GCA-TTG-G--TTAACAGG-
195 CCCCTATCCCTCATCAAACCT-TAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
** *
4258166 -TGCTGCCAGTAAGCTTTTAAAGTGTCTGAAATGGGGACACTTTTTT-GAATGGGTCACAAAATC
259 TTGCTGCCAGT-AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT-GGTCACAAAATC
* * * * *
4258229 TTATAGACTTCGTGTTTCTAGCTGAATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
322 TTGTACACTTCGAGTTTTTAGCTGATTTTTTTTTGT-CATGCCAACAAAAATACAAGGATCACGT
* * * * *
4258294 CTACCAAGTTTGGGGCCAAAACTCCTTCTGAACAAATTTTAAAAAATCTCAAACCGCAGAAAGTT
386 CTACCAAGTTTGGGGCCAAAACTCC-TCTGAAAAAATTTTAAAAAATCCCGAACCGAAAAAAGTT
* * * * *
4258359 TCGAAAATCATGAAAAATAAAAAATGAGTCGTCTTGGCATGAAACTTCACGTGAAGGCTTAAGGG
450 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
***
4258424 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTACCTA
515 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTA
*
4258489 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTG-G-
580 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGC
4258552 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGG
645 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGG
* * * * **
4258617 ACCGGATCGAGGGTTGTGGCAGCAGGATCGGTAGCACTCAGAGGGGGACCCGGTCGATCCCCGGC
710 ACCGGA-CGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGAGGGGAACCCGACCGATCCCCGGC
*** * * * * *
4258682 TTGGGCATCTCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCA
774 TTACACATCCCACCCCTCTGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAAGCA
* **
4258747 TACGGGGTTCATTCCCAGTCTAAGCATACGGAGATCATTCCCAG
839 TACGGAGTTCATTCCCAGTCTAAGCATACAAAGATCATTCCCAG
* * * **
4258791 TCTAAGATCGGACTGGATCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGTTG
1 TCTAAGATCAGACCGGATCGAGGGATACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCG
* * * ** * * *
4258856 TATTTTTCTTCGCCGGGACAACATCGCCGGAGCATC-G-CCAGAGAAC-TT-G-A-CCGGTGGCA
66 CATTTTTCTTCACCGGGACAACATCGCCAGAAAACCTGACC-GACAACATTGGCATCCAGT-G-A
* *
4258915 TTGGGCTTCCGACGATCGGGGGGGTGTGCGCACATGATGTGTGATGTGTGCTGGTACTTGGCCCT
128 TTGGG-----G--GAGCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCT
*
4258980 TATATTGGCCCCCTATCCCTCTTCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
186 TATATTGGCCCCCTATCCCTCATCAAACCTT-AGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * *
4259045 TTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCCAATGGTAA
250 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
*
4259110 CAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTTTGTACAAGCCAACAAAAATACAAG
315 CAAAATCTTGTACACTTCGAGTTTTTAGCTGA-TTTTTTTTTGT-CATGCCAACAAAAATACAAG
** *
4259175 GATCACGTCTACCAAGTTTGGTTCCAAAACTCCTGCTGAAAAAATTTTAAAAAATCCCGAACCGT
378 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-CTGAAAAAATTTTAAAAAATCCCGAACCGA
* *
4259240 AAAAAGTTTCAAAAATCGTGAAAGATAGAAAACGAGTCGTCTTGCCATGACACTTCACGTGAAGG
442 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
4259305 CTTAAGGGACCATTGTATGAATTTACAAGCCATAGAAATGGTATTGGCATGCAGAAATATGAAGA
507 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * *
4259370 TGTGCCTAAACCCACCTATCGCCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCG
572 TGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * *
4259435 TAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCTAGT
637 TAGTG--CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * *
4259500 CTACGATCA-AACTGGACCGAGGGTTGCGGCAGCAG
700 CTAAGAT-AGGACCGGA-CGAGGGTTGCGGCAGCAG
4259535 TTTTTGGGCT
Statistics
Matches: 1411, Mismatches: 172, Indels: 83
0.85 0.10 0.05
Matches are distributed among these distances:
870 4 0.00
871 1 0.00
872 7 0.00
873 1 0.00
874 4 0.00
875 5 0.00
876 281 0.20
877 3 0.00
878 3 0.00
879 90 0.06
880 11 0.01
881 22 0.02
882 66 0.05
883 264 0.19
884 4 0.00
885 4 0.00
886 2 0.00
887 10 0.01
888 70 0.05
889 281 0.20
890 85 0.06
891 36 0.03
892 1 0.00
893 82 0.06
894 1 0.00
901 3 0.00
902 69 0.05
903 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (882 bp):
TCTAAGATCAGACCGGATCGAGGGATACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCG
CATTTTTCTTCACCGGGACAACATCGCCAGAAAACCTGACCGACAACATTGGCATCCAGTGATTG
GGGGAGCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
CCCTATCCCTCATCAAACCTTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
ACACTTCGAGTTTTTAGCTGATTTTTTTTTGTCATGCCAACAAAAATACAAGGATCACGTCTACC
AAGTTTGGGGCCAAAACTCCTCTGAAAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAA
ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCA
CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCCCGCCC
GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGA
CGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGAGGGGAACCCGACCGATCCCCGGCTTACACA
TCCCACCCCTCTGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAG
TTCATTCCCAGTCTAAGCATACAAAGATCATTCCCAG
Found at i:4260138 original size:712 final size:708
Alignment explanation
Indices: 4258770--4260247 Score: 2160
Period size: 712 Copynumber: 2.1 Consensus size: 708
4258760 CCCAGTCTAA
* * * *
4258770 GCATACGGAGATCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGATGCTGGG
**** * *
4258835 CTCAGGCATGTGCTGGTGTTGTATTTTTCTTCGCCGGGACAACATCGCCGGAGCATCGCCAGAGA
66 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCAGGGACAACATCACCGGAGCATCGCCAGAGA
* * ** *
4258900 ACTTGACCGGTGGCATTGGGCTTCCGACGATCGGGGGGGTGTGCGCACATGATGTGTGATGTGTG
131 ACCTGACCGGCGGCATTGGGCTTCCGACGATCGGGGGGGTGTGCGCACATGATGTGCAATGGGTG
* *
4258965 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTTGAGAACTCACACCCCCTTA
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
4259030 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTGAAATGGGGACACT
261 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTAAAATGGGGACACT
* * * *
4259095 TTTTTCCAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTTTGTACAAGC
326 TTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG-ACAACC
** * *
4259160 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGTTCCAAAACTCCTGCTGAAAAAATTTTAA
390 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTGCTCAAAAAAATTTAA
* * * *
4259225 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAGATAGAAAACGAGTCGTCTTGCCATGA
455 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACAAGTCGTCTTGCCATGA
* * *
4259290 CACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAGAAATGGTATTGGCAT
520 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * **
4259355 GCAGAAATATGAAGATGTGCCTAAACCCACCTATCGCCCTATCGATCCACGGCTTGCGCATCCCA
585 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAACTTGCGCATCCCA
* * *
4259420 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTT-GTTTCGTCGATTGGCTTAG
650 TCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTTCATTTCGTCGATTAGCTTAG
* * ** * **
4259478 GCATACGGAGTTCATTCCTAGTCTACGATCAAACTGGACCGAGGGTTGCGGCAGCAGTTTTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGATGCTGGG
* * *
4259543 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGG-CACCATCACCGGAGCATCGCCGGAG
66 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCG-CAGGGACAACATCACCGGAGCATCGCCAGAG
* * * *
4259607 AACCTGATCGGCGGCGTTGGGGTTCCGACGATCGGGGGGTCGGGGGGGTGTGCGGACATGATGTG
130 AACCTGACCGGCGGCATTGGGCTTCCGACGA--------TCGGGGGGGTGTGCGCACATGATGTG
4259672 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
187 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
4259737 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
252 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTAAAAT
* *
4259802 GGGGACAC-TTTTTCAAATGGTCAA-AAAATCTTGTACACTTCGAGTTTTTGGGTGAATTTTTTT
317 GGGGACACTTTTTTCAAATGGT-AACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
4259865 ATG-CATCCCAACAAAAATACAAGTATCACGTCTACCACGTTTGGGGCCAAAACTCCTTC-CAAA
381 ATGACAACCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTGCTCAAA
4259928 AAAATTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACAAGTCGTC
446 AAAATTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACAAGTCGTC
4259993 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
511 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
4260058 CATTGGCACT-CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAACTT
576 CATTGGCA-TGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAACTT
** * * * *
4260122 GCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCTGTCCGCTTCATTTCGTCGGTTAGC
640 GCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTTCATTTCGTCGATTAGC
4260187 TTAG
705 TTAG
* * *
4260191 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGAGGCAGCAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAG
4260248 GATCGGTAGC
Statistics
Matches: 683, Mismatches: 75, Indels: 19
0.88 0.10 0.02
Matches are distributed among these distances:
708 130 0.19
709 4 0.01
712 225 0.33
713 116 0.17
715 50 0.07
716 158 0.23
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (708 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGATGCTGGG
CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCAGGGACAACATCACCGGAGCATCGCCAGAGA
ACCTGACCGGCGGCATTGGGCTTCCGACGATCGGGGGGGTGTGCGCACATGATGTGCAATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTAAAATGGGGACACT
TTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGACAACCC
AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTGCTCAAAAAAATTTAAA
AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACAAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAACTTGCGCATCCCAT
CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTTCATTTCGTCGATTAGCTTAG
Found at i:4260386 original size:26 final size:26
Alignment explanation
Indices: 4260350--4260402 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4260340 GTTGACTTAG
*
4260350 GCATTCGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
4260376 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
4260402 G
1 G
4260403 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:4263232 original size:720 final size:721
Alignment explanation
Indices: 4261851--4263970 Score: 2813
Period size: 735 Copynumber: 2.9 Consensus size: 721
4261841 CGTGGGTTGA
* * * *
4261851 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGTAGCACATG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATG
* ** * * * *
4261916 ATGGGCTTGGGCATGTGCTGGTGTCGAATTTTTCTTCGTCGGGGCACCATCATTGGAGCATCGTC
66 CTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC
* * * *
4261981 GGAGAACCTGACTGGC-AGCATTGGGGTTCCGACGATTGGGGGGGCCG-GGGGGTTGTGCGCACA
131 GGAGAACCTGACCGGCGA-CATTGGGGTTCCGATGATCGGGGGGGCCGAGGGGGGTGTGCGCACA
* *
4262044 TGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAG
195 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCAAG
* *
4262109 AACTCACACCCCCTTAAAGAGCATATGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
260 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGT
* * *
4262174 CT-GGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAGTTTTTAGTTGAAA
325 CTAAG-ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGAGTTTTTAGTTGAAT
* * * * ** * *
4262238 TTTTTTGTGCATGCCTACAAAGACACAAGGATCACGTCTATTAAGTATGGGGCGAAAACAGCCTT
389 TTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-AAAA-ATCCTT
*
4262303 CCGAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
452 TCG-AAAAAATTTTAAAAAAT-CCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
*
4262368 AGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
515 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
4262433 AAAATGGCATTGGCACT-CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCT
580 AAAATGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCC
*
4262497 ACGGCTTGCGCATCCCGTCT-TTCTGGACGACGTA-GCGTCCGCCTAC-C-CG-CCT-GCTG-C-
643 ACGGCTTGCGCATCCCGTCTCTT-TGGACGAC-TATGCGTCCG-C-ACGCTCGTCATGGCTGACT
*** **
4262554 T-CAT-TTTG-TCGATTGG
704 TGCATAGAAGTTC-ATTCC
* * *
4262570 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGATGGTTTCGACAGCACATG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATG
* ** * * *
4262635 CTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACGATCGTCGGAGTATCGTT
66 CTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC
*
4262700 GGAGAACCTGACCGGCGACATTGGGGTTCCGATGAACGGGGGGGCCGAGGGGGGTGTGCGCACAT
131 GGAGAACCTGACCGGCGACATTGGGGTTCCGATGATCGGGGGGGCCGAGGGGGGTGTGCGCACAT
* * *
4262765 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCCTATCCCTTATCGAACTTCTAG
196 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACTTCAAG
* * * *
4262830 TACTCACACTCCCTTAAAGAGCATTTGAGATTTTATAGCTTTACTGCCAGTAGCCATTAAAGTGT
260 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGT
*
4262895 CTAAGATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTCTGAGTTTTTAGTTGAAT
325 CTAAGATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TGAGTTTTTAGTTGAAT
* *
4262960 TTTTTTATGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCAAAAATTCCTTT
389 TTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAA-TCCTTT
*
4263025 CGAAAAAATTTTAAAAAATCTCAAACCGGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
453 CGAAAAAATTTTAAAAAATC-CAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
*
4263090 TCGTCTTGCCATGAAACTTCACGTGAAGGCTCAAGGGACCATTGTATGAATTTACAAGCCATAAA
517 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
4263155 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCATG
582 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC-CACCTACCACCCTATCGATCCACG
* * * *
4263220 GCTTGGGCATCCCGTCTCTTTGGTCGGCTATGCGTCCGCACGCTCGTTTCATGGGTTGACTTAGG
646 GCTTGCGCATCCCGTCTCTTTGGACGACTATGCGTCCGCACGCTCG--TCAT-GGCTGACTT--G
4263285 CATACGAAGTTCATTCC
706 CATA-GAAGTTCATTCC
* ** * * *
4263302 CAGTCTAAGCATACAAAGTTCATTCCCAGTATAAGATCGGATTGGA-CGAGGGTAACGGCAGCAC
1 C--T-TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCAC
* ** * **
4263366 ATACTGGGCTCAGGCATGTGCTGGTGCTACATTCTTCTTCGTTAGGGCACCATCGTCGGAGCATC
63 ATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC
* * * * * *
4263431 GTCGGAGAACCTGATCGGTGGCATTGGGGTTTCGATGATCGAGGGGGCCGAGGGGGGTCTGCGCA
128 GTCGGAGAACCTGACCGGCGACATTGGGGTTCCGATGATCGGGGGGGCCGAGGGGGGTGTGCGCA
* * * *
4263496 CATGATGTGCGATGGGTGCCGATACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTTG
193 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTTC
*
4263561 AA-AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAG
257 AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAG
* *
4263625 TGTTTGAA-ATGGGGAAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTGTTTAG
322 TGTCT-AAGATGGGG--ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-GAGTTTTTAG
* * * *
4263689 CTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATTATGTCTACCAAGTTTGGGGCCAAAAC
383 TTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAAA
* * *
4263754 TCC-TTCTGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATATA
447 TCCTTTC-GAAAAAATTTTAAAAAATCC-AAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGA
* *
4263818 AAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAG
510 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * *
4263883 CCATAAAAATGGCATTGGCAAGCTGAAATATG-AGATGTGCCTAAAGCCTCCTACCACCCTATCG
575 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCG
* * *
4263947 ATCCACAGCTTGCGTATCCAGTCT
639 ATCCACGGCTTGCGCATCCCGTCT
4263971 AAGATCGAAC
Statistics
Matches: 1232, Mismatches: 131, Indels: 61
0.87 0.09 0.04
Matches are distributed among these distances:
718 2 0.00
719 158 0.13
720 267 0.22
721 136 0.11
722 60 0.05
723 2 0.00
725 3 0.00
726 1 0.00
727 1 0.00
730 3 0.00
732 5 0.00
733 85 0.07
734 224 0.18
735 280 0.23
736 5 0.00
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (721 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATG
CTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC
GGAGAACCTGACCGGCGACATTGGGGTTCCGATGATCGGGGGGGCCGAGGGGGGTGTGCGCACAT
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCAAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTC
TAAGATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGAGTTTTTAGTTGAATTT
TTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAATCCTTTCGA
AAAAATTTTAAAAAATCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGTCTCTTTGGACGACTATGCGTCCGCACGCTCGTCATGGCTGACTTGCATAGAAGTT
CATTCC
Found at i:4263314 original size:26 final size:26
Alignment explanation
Indices: 4263284--4263336 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4263274 GTTGACTTAG
* *
4263284 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTATAA
4263310 GCATACAAAGTTCATTCCCAGTATAA
1 GCATACAAAGTTCATTCCCAGTATAA
4263336 G
1 G
4263337 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTATAA
Found at i:4264374 original size:26 final size:26
Alignment explanation
Indices: 4264344--4264394 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4264334 GTTGACTTAG
* *
4264344 GCATACGGAGTTCATTCCTAGTCTAT
1 GCATACGGAGTCCATTCCCAGTCTAT
4264370 GCATACGGAGTCCATTCCCAGTCTA
1 GCATACGGAGTCCATTCCCAGTCTA
4264395 AGATTGAATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAT
Found at i:4266086 original size:26 final size:26
Alignment explanation
Indices: 4266049--4266101 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4266039 GTTGACTTAG
* *
4266049 GCATACACAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAATCTAA
4266075 GCATACAAAGTTCATTCCCAATCTAA
1 GCATACAAAGTTCATTCCCAATCTAA
4266101 G
1 G
4266102 TTCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.28, G:0.11, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAATCTAA
Found at i:4268713 original size:26 final size:26
Alignment explanation
Indices: 4268661--4268713 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
4268651 GTTGACTTAG
*
4268661 GCATACGGAGTTCATTCCCTATTTAA
1 GCATACGGAGTTCATTCCCTATCTAA
4268687 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCATTCCCTA-TCTAA
4268713 G
1 G
4268714 ATTGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCTATCTAA
Found at i:4269524 original size:898 final size:893
Alignment explanation
Indices: 4267794--4273877 Score: 7882
Period size: 898 Copynumber: 6.9 Consensus size: 893
4267784 GTTGACTTAG
* *
4267794 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGGGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * * *
4267859 CTCGGGCATGTGCTGGTACCATATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGCCGGAGA
* * * *
4267924 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCTGGGGGTGTGCGCACAAGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * * * * *
4267989 AAGGGTGCTGGTACTTGGCCCTTTTATTTGCCCCCTATTCCTCATGAAACCTCAAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
4268054 CCCCTTAAAGAGCATTTG-GGTTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
4268118 GGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTC
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * *
4268183 CGTGCCAAGAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAGAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
* * * *
4268248 TTTAAAAAAT-CTCAAACCGTAAAAAGTCTAAAAAATCATCAAAAATAGAAAACGAGTCGTCTTG
456 TTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
4268312 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
4268377 TGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGC
585 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
4268442 ATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCTGCCCACTCGTTTCGTCGGTTGGCTTAGGCATA
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATA
* * * * * * *
4268507 CGAAGTTCATTCCCAGTCAAAGATCAGACCAGACCAAGGGTTGCGGCAACAGGATCGGTAGCACA
715 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACA
* ** * * **
4268572 TAGAGAAGGCCCCAGTCGATTCTTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
780 CAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
** *
4268637 TTCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTATTTAA
845 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-ATCTAA
* * * *
4268687 GCATACGGAGTTCATTCCCAGTCTAAGAT-TGAACCAGACCGAGGGTTACGGCAGCAAATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * *
4268751 GCTCGGGCATGTGCTGGTGTCGCATTTTTCTACACCGGGGCACCATCGCCGGAGTATCACCGGAG
65 GCTCGGGCATGTGCTGGTGTCACATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGCCGGAG
** * * *
4268816 AACCTGACCGGCAACATTTGGGTTCCGACAATCGGGGGGCCGAGGGGGGGTGTGCACACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC---GGGGGGTGTGCGCACATGATG
* *
4268881 TGCAATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
4268946 ACACCCCC-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
4269010 ATGCGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
4269075 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* *
4269140 AAATTTTAACAAAAATCCTGAACCGTAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCA
452 AAATTTT-A-AAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * * *
4269205 CCTTGCCATGAAACTTGACGTGAAGGCTTAAGTGACCATTGTATGACTTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
4269270 GGCATTGGCATGTAGAAATATGAAGATGTACGTAAACTCACCTACCACCCAATCGATCCACGGCT
580 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
4269335 TGCGCATCCTGTCTCTCTGGTCGGCATAGTGCCCTCCCGCCCGCTTGTTTCGTTGATTGGCTTAG
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAG
* * * * * *
4269400 GCATACGGAGTTTATTCCCAATCTAAGATTGGACCGGATCGAGGGTTGTGGTAGCAGGATCGATA
710 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGTA
* * *
4269465 GCGCACAGAGGGGGACCC-GATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAACG
775 GCACACAGAGGGGGACCCAG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* *** * *
4269529 CCCACACGCTCATTTTACGGGTTGACTTAGGCATATGGAGTTCATTCCCTGTCTAA
839 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-ATCTAA
* * * * * *
4269585 TCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGACAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * ** * *
4269650 CTTGGGCATGTGCTGGTGTCGTATTTTTCCTCACCGGGGCACTGTCGTCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGCCGGAGA
* * * * * * *
4269715 ACTTGATCGACAGCATTAGGGATCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
4269780 GATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTC-AGAACTCAC
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCAC
* * *
4269844 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
4269909 GGGGACA-TTTTATTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
324 GGGGACACTTTT-TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** * *
4269973 GTACATGCCAACAAAAATACAAGGATCACGTCTATGAAGTTTGGGGCCAAAACTACTT-TCAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAA
* * ** *
4270037 AAATTTTAAAAAAT-CTCGAATCGTAAAAAGTTTCCAAAATTGTGAAAAATAGAAAACGAGTTGT
452 AAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
4270101 CTTGCCATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTATAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
4270166 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
4270231 GCGCATCTCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCTGCTTGTTTCGTCAGTTGGCTTAGG
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGG
* * * * * * *
4270296 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCGGCAGCAGGATTGGCAA
711 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGTAG
* * * ** * * * *
4270361 AACATAGAGGGGGACCCA-ACGGATCCGTGGCCTGCGCATCCCGCCCCTCTAGCCGGCTAAGCAC
776 CACACAGAGGGGGACCCAGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
4270425 CCGCATGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-TCTAA
* * * * *
4270480 GCATACGGAGTTCATTCCCACTTTAAGATCAGACTGGATCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
4270545 CTCGGGCATGTGCTGGTGCCACTTTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGCCGGAGA
* * * * * * *
4270610 ACCTGACCGACGGTACTGGGGTTCTGGCGATCAGGGGGCCGGGGGGTGTTCGCACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
4270675 ATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
4270740 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATCG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
4270805 GGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * *
4270869 CACGCCAACAAAAATACAAGGATGACGTCTACCAAGTTTGGGGCCAAAAATCATTCCGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
* * * * *
4270934 TTTAAAAAATCTTGAACCGCAAAAAGGTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGA
456 TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
4270999 AATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAATTGGCATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** *
4271063 GGCACACAGAAATATGAA-ATGTGCCTAAACCC-CCTACCACCCTATCGATCCACGACTTGCGCA
586 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * * *
4271126 TTCCGTCTCTCTGGCCGACGTAGTGCCCACCCACCCACTCGTTTCATCGGTTGGCTTAGGCATAC
651 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * *
4271191 GGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTATGGTAGCCGGATAGGTAGCACAC
716 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACAC
* * * * *
4271256 AGAGGGGCACCCAGTCGATCCCCGGCTTGCGTATCCCGCCCTTCTGGTCGACTGAGCGCCCGCAC
781 AGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
4271321 ACTCGTTTCGTGGGTTGAC-T-----T----AG---------------
846 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATCTAA
*
4271344 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
4271409 CTCGGCCATGTGCTAGTGTCACATTTTTACTTTGCCGGGGCACCAT---C---G--T---CGGAG
66 CTCGGGCATGTGCTGGTGTCACATTTTT-CTTCGCCGGGGCACCATCGCCAGAGCATCGCCGGAG
** * * * *
4271463 AACCTGACCGGCGGCATTACGGTTCCGACGATTGGGGGGCCGAGGGTGTGTGCGCACATTATTTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCG-GGGGGTGTGCGCACATGATGTG
*
4271528 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
4271593 ACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTTTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
4271658 GGGGACTCTTTTTTCAAATGGTCACAAAATCGTGTATACTTCAAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** * *
4271723 TGCATGCCAAAAAAAATACAAGGATCACGTCTATGAAGTTTGGGGCCAAAAATCCTACTGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
*
4271788 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
4271853 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTAAAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
4271918 TTGGCACGTAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATC--T--A--GC---CG
584 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** ** * * * *
4271974 -A---CG--T-AGT-GCC--C--ACCCGCCCGTCCGCCCGCTCGTTTCATCGATTGGCTTAGGCA
649 CATCCCGTCTCTCTGGCCGGCGTA-GTGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCA
** * * * *
4272027 TACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGGTAGCCGAATCGGTAGCA
713 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGTAGCA
* * * **
4272092 TGC-CTGAGGGGGACCC-GACCGATCCCCGGCTTACGCATCCCGCCCCTCTTACCGGCTGAGCGC
778 --CACAGAGGGGGACCCAG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
4272155 CTGCATGCTCATTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAA
840 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-TCTAA
* ** *
4272210 GCATCCGGAGTTCATTCCTTGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** *
4272275 CTCAGGCATGTGCTGGTGTCGCATTTTTCTTCTTCGGGGCACCATCGCCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGCCGGAGA
*
4272340 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGAGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG-GGCCGGGGGGTGTGCGCACATGATGTGC
** * *
4272405 GATGGGTGCTGGTACTTGGAACTTATATTGGCCCCCTATCCCTCATCAAATCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
4272470 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
4272535 GTGACACTTTTTTCAAATGGTCACAAAATCGTGTATACTTCGAGGTTTTAGCTG-ATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
4272599 GCATCCCAAAAAAAATACAAGCATCACGTCTACGAAGTTTGGGGCCAAAACTCCTT-TCGAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAA
* * * *
4272663 ATTTTCAAAAATCCCGAAGCGTAAAAAGTTTCAAAAATCATGAAAAATAGTAAACGAGTCGTCTT
454 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
4272728 GCCATGAAACTTTACGTGAAGGCTTGAGGGCCCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* ** * *
4272793 CTGGCACACAGAAATATGCAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
584 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
4272858 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCTGCCCGCTCATTTCGACGGTTGG-
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CT------T-GTTTCGTCGGTTGGC
* * ** * **
4272922 TTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGTTCGGATCGAGGGTTGCCGCAGCAGGATC
706 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATC
* * * *
4272987 AGTAGCACACAGAGGGGCACCCAGTCGATCCCCGGCTTGTGCATCCCGCCCTTCTGGCCGGCTGA
771 GGTAGCACACAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
*
4273052 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-GAGAGTTCATTCCCAGTC-AA
836 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG-GAGTTCATTCCCA-TCTAA
* ** *
4273110 GCATACGGAGTTCATTCCCAGGCTAAGATCAGATTGGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
4273175 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGCCGGAGA
* ** * *
4273240 ACCTGACCGGCGTCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCATATGATTTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * **
4273305 AT-GGTGCTGGTACTAGGCCCTTATATTGGTCCTGTATCCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
4273369 CCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCTATGAAAGTGT-TCGAAATG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATG
*
4273433 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGG
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
4273498 GCATGCCAACAAAAATGCAAGGATCACGTCTACCAAGTTTGGGACCAAAACTTCTTTTGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
** * ** * *
4273563 TTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCATGAAAAAGAAAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
**
4273628 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTGATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
4273693 TGGCACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGTCTTGCGC
585 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
4273758 ATCCCGTCTCTCTGGCTGGCATAGTGCCTGCCCGCCCGCCTGCTCATTTCGTCGGTTGGCTTAGG
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CT--T-GTTTCGTCGGTTGGCTTAGG
* * *
4273823 CATACGGTGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGATTGTGGCAGCA
711 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCA
4273878 CATGGTGGGC
Statistics
Matches: 4511, Mismatches: 571, Indels: 215
0.85 0.11 0.04
Matches are distributed among these distances:
838 1 0.00
839 92 0.02
840 69 0.02
841 2 0.00
842 3 0.00
843 1 0.00
844 1 0.00
846 3 0.00
849 1 0.00
850 4 0.00
853 1 0.00
854 38 0.01
855 149 0.03
856 194 0.04
857 54 0.01
858 13 0.00
859 15 0.00
862 1 0.00
864 85 0.02
865 30 0.01
866 84 0.02
868 1 0.00
871 1 0.00
873 1 0.00
874 1 0.00
875 232 0.05
876 230 0.05
877 6 0.00
879 1 0.00
880 2 0.00
881 2 0.00
884 3 0.00
885 1 0.00
888 2 0.00
889 1 0.00
890 202 0.04
891 15 0.00
892 56 0.01
893 329 0.07
894 163 0.04
895 541 0.12
896 396 0.09
897 180 0.04
898 673 0.15
899 314 0.07
900 152 0.03
901 96 0.02
902 59 0.01
903 10 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGTCACATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACAC
AGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATCTAA
Found at i:4269596 original size:26 final size:26
Alignment explanation
Indices: 4269560--4269610 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4269550 TTGACTTAGG
* *
4269560 CATATGGAGTTCATTCCCTGTCTAAT
1 CATACGGAGTTCATTCCCAGTCTAAT
4269586 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
4269611 GATCAGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAT
Found at i:4270506 original size:26 final size:26
Alignment explanation
Indices: 4270454--4270506 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4270444 GTTGACTTAG
*
4270454 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
*
4270480 GCATACGGAGTTCATTCCCACTTTAA
1 GCATACGGAGTTCATTCCCACTCTAA
4270506 G
1 G
4270507 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTCTAA
Found at i:4273724 original size:899 final size:901
Alignment explanation
Indices: 4271970--4273851 Score: 2681
Period size: 899 Copynumber: 2.1 Consensus size: 901
4271960 ACCCTATCTA
* * *
4271970 GCCGACGTAGTGCCCACCCGCCCGTCCGCCCGCTCGTTTC-ATCGATTGGCTTAGGCATACGGAG
1 GCCGACGTAGTGCCCGCCCGCCCGT-CGCCCGCTCATTTCGA-CGGTTGGCTTAGGCATACGGAG
** * * * *
4272034 TTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGGTAGCCGAATCGGTAGCATGCCTGA
64 TTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCCGCAGCAGAATCAGTAGCA-GCCAGA
* * * *
4272099 GGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTTACCGGCTGAGCGCCTGCATGCT
128 GGGGCACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGACCGGCTGAGCGCCCGCACGCT
* * *
4272164 CATTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAAGCATCCGGAGTTCATTCCT
193 CATTTCATGGGTTGACTTAGGCATAGAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * ** *
4272229 TGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGT
258 AGGCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGC
* * * *
4272294 CGCATTTTTCTTCTTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGACGGCATTGG
323 CACATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCGTCAGAGAACCTGACCGACGGCATTGG
*
4272359 GGTTCCGACGATCGGGGAGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
388 GGTTCCGACGATCGGGGAGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTAGG
* * *
4272424 AACTTATATTGGCCCCCTATCCCTCATCAAATCTTGAGAACTCACACCCCCTTAAAGAGCATTTG
453 AACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTC
* *
4272489 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGTGACACTTTTTTCAAATG
518 AGATTTTACAGGTTTGCTGCCAGTAGCCATGAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
4272554 GTCACAAAATCGTGTATACTTCGAGGTTTTAGCTGATTTTTTTGTGCATCCCAAAAAAAATACAA
583 GTCACAAAATCGTGTACACTTCGAGGTTTTAGCTGATTTTTTTGGGCATCCCAAAAAAAATACAA
* * * * *
4272619 GCATCACGTCTACGAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTCAAAAATCCCGAAGCG
648 GCATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCG
* * ** *
4272684 TAAAAAGTTTCAAAAATCATGAAAAATAGTAAACGAGTCGTCTTGCCATGAAACTTTACGTGAAG
713 CAAAAAGTTTCAAAAATCATGAAAAAGAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
4272749 GCTTGAGGGCCCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCACACAGAAATATGCAG
778 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCACACAGAAATATGAAG
*
4272814 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACAG-CTTGCGCATCCCGTCTCTCTG
843 ATGTACCTAAACCCACCTACCACCCTATCGATCCA-AGTCTTGCGCATCCCGTCTCTCTG
*
4272873 GCCGACGTAGTGCCCGCCCGCCCGTCTGCCCGCTCATTTCGACGGTTGG-TTAGGCATATGGAGT
1 GCCGACGTAGTGCCCGCCCGCCCGTC-GCCCGCTCATTTCGACGGTTGGCTTAGGCATACGGAGT
***** * * *
4272937 TCATTCCCAGTCTAAGATTGGTTCGGATCGAGGGTTGCCGCAGCAGGATCAGTAGCA-CACAGAG
65 TCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCCGCAGCAGAATCAGTAGCAGC-CAGAG
* ** * *
4273001 GGGCACCC-AGTCGATCCCCGGCTTGTGCATCCCGCCCTTCTGGCCGGCTGAGCGCCCGCACGCT
129 GGGCACCCGA-CCGATCCCCGGCTTACGCATCCCGCCCCTCTGACCGGCTGAGCGCCCGCACGCT
* *
4273065 CGTTTCGTGGGTTGACTTAGGCATAGAGAGTTCATTCCCAGTC-AAGCATACGGAGTTCATTCCC
193 CATTTCATGGGTTGACTTAGGCATAGAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
** *
4273129 AGGCTAAGATCAGATTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
258 AGGCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGC
* * *
4273194 CACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCAGAGAACCTGACCGGCGTCATTGG
323 CACATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCGTCAGAGAACCTGACCGACGGCATTGG
** * *
4273259 GGTTCCGGTGATCGGGG-GGCCGGGGGGTGTGCGCATATGATTTGCGAT-GGTGCTGGTACTAGG
388 GGTTCCGACGATCGGGGAGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTAGG
** * **
4273322 CCCTTATATTGGTCCTGTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTC
453 AACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTC
*
4273387 AGATTTTACAGGTTTGCTGCCAGTAGCTATGAAAGTGT-TCGAAATGGGGACACTTTTTTCAAAT
518 AGATTTTACAGGTTTGCTGCCAGTAGCCATGAAAGTGTCT-GAAATGGGGACACTTTTTTCAAAT
* * * * *
4273451 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGGCATGCCAACAAAAATGC
582 GGTCACAAAATCGTGTACACTTCGAGGTTTTAGCTG-ATTTTTTTGGGCATCCCAAAAAAAATAC
* * *
4273516 AAGGATCACGTCTACCAAGTTTGGGACCAAAACTTCTTTTGAAAAAATTTTAAAAAATCCCAAAC
646 AAGCATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAAC
**
4273581 CGCAAAAAGTTTTGAAAATCATGAAAAAGAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
711 CGCAAAAAGTTTCAAAAATCATGAAAAAGAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
** * **
4273646 AGGCTTAAGGGACCATTGTATGAATTTACAAGTGATAAAAATGGCATTGGCACGTAGAAATATGA
776 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCACACAGAAATATGA
*
4273711 AGATGTACCTAAACCCACCTACCACCCTATCGATCCATGTCTTGCGCATCCCGTCTCTCTG
841 AGATGTACCTAAACCCACCTACCACCCTATCGATCCAAGTCTTGCGCATCCCGTCTCTCTG
* * * * * * *
4273772 GCTGGCATAGTGCCTGCCCG-CC--CGCCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGTGTT
1 GCCGACGTAGTGCCCGCCCGCCCGTCGCCCGCTCATTTCGACGGTTGGCTTAGGCATACGGAGTT
4273834 CATTCCCAGTCTAAGATC
66 CATTCCCAGTCTAAGATC
4273852 GGACCGAACC
Statistics
Matches: 867, Mismatches: 104, Indels: 23
0.87 0.10 0.02
Matches are distributed among these distances:
895 20 0.02
896 32 0.04
897 1 0.00
898 166 0.19
899 298 0.34
900 151 0.17
901 97 0.11
902 59 0.07
903 42 0.05
904 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (901 bp):
GCCGACGTAGTGCCCGCCCGCCCGTCGCCCGCTCATTTCGACGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCCGCAGCAGAATCAGTAGCAGCCAGAGGG
GCACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGACCGGCTGAGCGCCCGCACGCTCAT
TTCATGGGTTGACTTAGGCATAGAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGG
CTAAGATCAGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCAC
ATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCGTCAGAGAACCTGACCGACGGCATTGGGGT
TCCGACGATCGGGGAGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTAGGAAC
TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGA
TTTTACAGGTTTGCTGCCAGTAGCCATGAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
ACAAAATCGTGTACACTTCGAGGTTTTAGCTGATTTTTTTGGGCATCCCAAAAAAAATACAAGCA
TCACGTCTACCAAGTTTGGGACCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCGCAA
AAAGTTTCAAAAATCATGAAAAAGAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCACACAGAAATATGAAGATG
TACCTAAACCCACCTACCACCCTATCGATCCAAGTCTTGCGCATCCCGTCTCTCTG
Found at i:4274462 original size:702 final size:707
Alignment explanation
Indices: 4273110--4274560 Score: 2083
Period size: 702 Copynumber: 2.0 Consensus size: 707
4273100 TCCCAGTCAA
* ** * *
4273110 GCATACGGAGTTCATTCCCAGGCTAAGATCAGATTGGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGATTGCAGCAGCACATGCTGGG
4273175 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT--CC-G-GCATCG--AGAGA
* ** * *
4273240 ACCTGACCGGCGTCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCATATGATTTGCG
125 ACCTAACCGGCGTCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* **
4273305 ATGGTGCTGGTACTAGGCCCTTATATTGGTCCTGTATCCCTCATCAAACCTCGAGAACTCACACC
190 ATGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
4273370 CCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCTATGAAAGTGTTCGAAATGGG
255 CCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATGAAAGTGTTCAAAATGGG
* *
4273435 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGGC
320 GACACTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGGGC
* * * *
4273500 ATGCCAACAAAAATGCAAGGATCACGTCTACCAAGTTTGGGACCAAAACTTCTTTTGAAAAAATT
385 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCATCTGAAAAAATT
** *
4273565 TTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCATGAAAAAGAAAAAACGAGTCGTCTTGCC
450 TTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAAGAAAAAACGAGTCGTCCTGCC
**
4273630 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTGATAAAAATGGCATTG
515 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
4273695 GCACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGTCTTGCGCAT
580 GAACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * ***
4273760 CCCGTCTCTCTGGCTGGCATAGTGCCTG-CCCGCCCGCCTGCTCATTTCGTCGGTTGGCTTAG
645 CCCATCTCTCTAGCCAACATAGTGCCTGCCCCGCCCGCCTGCTCATTTCGTCGGTTGGCTTAG
* * ** *
4273822 GCATACGGTGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGATTGTGGCAGCACATGGTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGATTGCAGCAGCACATGCTGGG
*
4273887 CTCGGGCATGTGCTGGTTCCACATTTTTCTTCGTCGGGGCACCAT-C-GC-T-G-GAGAACCTAA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCCGGCATCGAGAGAACCTAA
* *
4273947 CCGGCAG-CATTGGGGTTTCGACGATCAGGGGGG-CTGGGGGTGTGCGCACATGATGTGCGATGG
131 CCGGC-GTCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT-G
* * *
4274010 GTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
193 GTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
4274075 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTG-TCTAAAATGGGGA
258 TTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATGAAAGTGTTC-AAAATGGGGA
* *
4274139 CACTTTTTTCAAATGGTCACAAAAACTTGTACGCTTCGACTTTTTAGCTGAATTTTTTTGTGCAT
322 CACTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGGGCAT
* * * *
4274204 GCCAACAAAAATATAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATCTGAATAAATTTT
387 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCATCTGAAAAAATTTT
** * * * * *
4274269 AAAAAATCCTGAGCCGCAAAGAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCCTGCCAT
452 AAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAAGAAAAAACGAGTCGTCCTGCCAT
*
4274334 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGA
517 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGA
* * *
4274399 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGCATCC
582 ACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
4274464 CATTTCTCTAGCCAACGTAGTGCCTGCCCACCCGTCCGCCTGCTCGTTTCGTCGGTTGGCTTAG
647 CATCTCTCTAGCCAACATAGTGCCTG--C-CCCGCCCGCCTGCTCATTTCGTCGGTTGGCTTAG
*
4274528 GCATACGAAGTTCATTCCCAGTCTAAGATCAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA
4274561 TCGGACCAAG
Statistics
Matches: 658, Mismatches: 73, Indels: 22
0.87 0.10 0.03
Matches are distributed among these distances:
701 57 0.09
702 435 0.66
704 1 0.00
705 1 0.00
706 64 0.10
709 1 0.00
712 99 0.15
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (707 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGATTGCAGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCCGGCATCGAGAGAACCTAA
CCGGCGTCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGTG
CTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATGAAAGTGTTCAAAATGGGGACACT
TTTTTCAAATGGTCACAAAAACTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGGGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCATCTGAAAAAATTTTAAAA
AATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAAGAAAAAACGAGTCGTCCTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACGC
AGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATC
TCTCTAGCCAACATAGTGCCTGCCCCGCCCGCCTGCTCATTTCGTCGGTTGGCTTAG
Found at i:4275568 original size:26 final size:26
Alignment explanation
Indices: 4275528--4275580 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4275518 GTTGACTTAG
4275528 GCATACAGAGATCATTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGTCTAA
* *
4275554 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGTCTAA
4275580 G
1 G
4275581 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGATCATTCCCAGTCTAA
Found at i:4275879 original size:857 final size:850
Alignment explanation
Indices: 4273822--4277053 Score: 3564
Period size: 844 Copynumber: 3.8 Consensus size: 850
4273812 GTTGGCTTAG
* * * * * * *
4273822 GCATACGGTGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGATTGTGGCAGCACATGGTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACGGAGGGTTGCGGCAGCACATGCTGGG
* ** * * *
4273887 CTCGGGCATGTGCTGGTTCCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGAACCTAACCGGC
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAAGGCACCATCACCGGAGAACCTAACCGAC
* * * *
4273952 -AGCATTGGGGTTTCGACGATCAGGGGGG-C-TGGGGGTGTGCGCACATGATGTGCGATGGGTGC
130 GA-CATTAGGGTTCCGGCGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* **
4274014 TGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
194 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
* *
4274079 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTAAAATGGGGACACTT
259 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
4274144 TTTTCAAATGGTCACAAAAACTTGTACGCTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAA
324 TTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* ** * *
4274209 CAAAAATATAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCA-TCTGAATAAATTTTAAAA
389 CAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACT-CATTCCGAA-AAAATTTAAAA
* * * * *
4274273 AATCCTGAGCCGCAAAGAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCCTGCCATGAAA
452 AATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
4274338 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGAATGC
517 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGC
* * *
4274403 AGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGCATCCCATT
582 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * *
4274468 TCTCTAGCCAACGTAGTGCCTGCCCACCCG-TCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCAT
647 TCTCTGGCCAGCGTAGTGCCCGCACACCCGCT-CG--T--TC---T-GTCAGTTGGCTTAGGCAT
* * *
4274532 ACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACC-AAGTGTTACGGCT-GCAGGATTGGCAGC
703 ACAAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAA-TGTTGCGG-TAGCAGGATCGG-AGC
** * * * * * * * * * ** * * *
4274595 ATGCAGAGATGAACCTGACCGATCCCTGGCTTGCGATCCCGC-C-CCTC-T-GGCTGGCTAAGCG
765 ACACAGAGAGGATCCAGCCCGA-CCATGAC-TCCCA-CACGCTCGTTTCGTGGGTTGACTTAG-G
*** * * ** * *
4274656 CCCGCA-CGCTCGCTCCGTGCATTGACTTAT
826 CATACAGAGATCATTCC---CA--GTC-TAA
* *** * * * *
4274686 GCTTGTAGAGTTCATTCCCAGTCTAAGGTCAAACAGGACAGAGGGTTGCGGCAGCACATGCTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGACGGAGGGTTGCGGCAGCACATGCTGGG
* * *
4274751 CTCGGGCATGTGCTGGTGCCACTTTTTTCTTCGCCTGGGCACCATCGTCGAAGCATCACCGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCG--T---CA--A--G--GCACCATCACCGGAGA
* * * * * *
4274816 ACCTGACCAACGACACTAGGGTTCCGGCGATCGGGGGGGTCAGGGGGGTGTGCGCACATGATGTG
119 ACCTAACCGACGACATTAGGGTTCCGGCGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* **
4274881 CGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
184 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
*
4274946 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAAT
249 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
4275011 GGCGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTATCTGAATTTTTTTG
314 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTG
** *
4275076 TGCATGCCAAC-AAAATACAAGGATCCACATCTAACCAAGTTTGGCCGGTGAAAA-TCATTCTGA
379 TGCATGCCAACAAAAATACAAGGAT-CACATCT-ACCAAGTTTGG--GGCCAAAACTCATTCCGA
* * *
4275139 AAAAATTTACAAAATATCGCCGAACCAGCCAAAAAGTATCTAAAAATCATGAAAAATAAAAAAAC
440 AAAAATTTA-AAAA-ATC-CCGAACCA--CAAAAAGTTTC-AAAAATCGTGAAAAAT-AGAAAAC
* * * *
4275204 GAGTCGTGC-TGTCATG-AAC-TCAAGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCA
498 GAGTCGT-CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCA
* *
4275266 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCAATC
562 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
*
4275331 CACGGCTTACGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCACACCCGCTCGTTCTGTCAGTT
627 CACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCACACCCGCTCGTTCTGTCAGTT
* * * *
4275396 GGCTTAGGCATCCAAAGTTCATTCCCAGTCTAAGAT-TGAATCGGATCGACTGTTGCGGTAGCAG
692 GGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAG-ATCGGACCGAATGTTGCGGTAGCAG
*
4275460 GATCGGTAGCACACAGAGGGGGATCCAG-CCGACCAT-AC-CCCACACGCTCGTTTCGTGGGTTG
756 GATCGG-AGCACACAGA-GAGGATCCAGCCCGACCATGACTCCCACACGCTCGTTTCGTGGGTTG
4275522 ACTTAGGCATACAGAGATCATTCCCAGTCTAA
819 ACTTAGGCATACAGAGATCATTCCCAGTCTAA
*
4275554 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACGGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGACGGAGGGTTGCGGCAGCACATGCTGGG
*
4275619 CTGGGGCATGTGCTGGTGCCACATTTTTCTTCG-CAAAGGCACCATCACCGGAGAACCTAACCGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-AAGGCACCATCACCGGAGAACCTAACCGA
* *
4275683 CGGA-ATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
129 C-GACATTAGGGTTCCGGCGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
4275747 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCAAGAACTCACACCCACTTA
193 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
* * * * *
4275812 AAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTTTGAAATAGTGACACT
258 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
4275877 TTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTTGTGCATGCC
323 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAA-TTTTTTTGTGCATGCC
** * * *
4275942 AACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTCAAAACTCCTTCCAAAAAAATTTTAAA
387 AACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCATTCCGAAAAAA-TTTAAA
* * **
4276007 AAATCCCAAACCATAAAAAGTTTCAAAAATCGTTTAAAATAGAAAACGAGTCGTCTTGCCATGAA
451 AAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
4276072 ACTCCACGTGAAGGCTGAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCATG
516 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATG
* * * * * *
4276137 CAAAAATATGAAGATCTGCCTAAACACATCTACTACCCTATCGATCTACGGCTTGCGCATCCCGT
581 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
4276202 CTCTCTGG-CTGACGTAGTGCCCGCCCGCCCACTCGCCCGCTCATTTTGACAGTTGGCTTAGGCA
646 CTCTCTGGCCAG-CGTAGT----GCCCG--CA--CACCCGCTCGTTCTGTCAGTTGGCTTAGGCA
* * * *
4276266 TACAGAA-TTCATTCCCAGTCTAAGATCAGATCGAACCGAAGGTTGCTGCAGCAGGATC-GA-CA
702 TACA-AAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAATGTTGCGGTAGCAGGATCGGAGCA
* * ** * * * * *
4276328 TCCCCGACTTTTGCATCCCGCCCCTCTGACCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGA
766 -CACAGA---GAGGATCCAG--CC-C-GACC--ATGA-CTCCCACACGCTCGTTTCGTGGGTTGA
* * *
4276393 CTTAGGCATACGGAGTTCATTCCCAATCTAA
820 CTTAGGCATACAGAGATCATTCCCAGTCTAA
* *
4276424 G-GT-C-G-G---A---CC-G-----GA-C---C-GA-GTGA----TGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGACG-GAGGGTTGCGGCAGCACATGCTGGG
** * * * *
4276463 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGAACCTGACCGGC
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAAGGCACCATCACCGGAGAACCTAACCGAC
* * *
4276528 GACATTAGGGTTCCGGTGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGGTGGGTGCT
130 GACATTAGGGTTCCGGCGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
4276593 GGTACTTGGCCCTCATATTGGCCCCCTATCGCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
195 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
* * *
4276658 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCAATTAAAGTGTTTGAAATGGGGACACTTT
260 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * ** *
4276723 TTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGTGTGCCAAA
325 TTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * *
4276788 AAAAATACAAGGATCGCATCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTGAAAAA
390 AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCATTCCGAAAAAA-TTTAAAAAA
** * **
4276853 TCTTGAATCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
454 TCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
**
4276918 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACACAG
519 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAG
* *
4276983 AAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTC
584 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
*
4277048 TTTGGC
649 TCTGGC
4277054 TGGCGTTGTG
Statistics
Matches: 2042, Mismatches: 251, Indels: 170
0.83 0.10 0.07
Matches are distributed among these distances:
843 253 0.12
844 294 0.14
845 1 0.00
847 1 0.00
848 4 0.00
849 1 0.00
850 20 0.01
851 18 0.01
852 136 0.07
853 1 0.00
854 9 0.00
855 10 0.00
856 20 0.01
857 259 0.13
858 33 0.02
859 16 0.01
860 80 0.04
861 4 0.00
862 1 0.00
863 4 0.00
864 81 0.04
865 4 0.00
866 2 0.00
867 2 0.00
868 90 0.04
869 5 0.00
870 57 0.03
871 5 0.00
872 2 0.00
873 7 0.00
874 19 0.01
875 116 0.06
876 22 0.01
877 223 0.11
878 20 0.01
879 13 0.01
880 9 0.00
881 6 0.00
883 155 0.08
884 19 0.01
885 19 0.01
886 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (850 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGACGGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAAGGCACCATCACCGGAGAACCTAACCGACG
ACATTAGGGTTCCGGCGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCATTCCGAAAAAATTTAAAAAATC
CCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCAGCGTAGTGCCCGCACACCCGCTCGTTCTGTCAGTTGGCTTAGGCATACAAAGTTCATTC
CCAGTCTAAGATCAGATCGGACCGAATGTTGCGGTAGCAGGATCGGAGCACACAGAGAGGATCCA
GCCCGACCATGACTCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGATCATTCCCAG
TCTAA
Found at i:4276621 original size:844 final size:844
Alignment explanation
Indices: 4273799--4277154 Score: 3816
Period size: 843 Copynumber: 3.9 Consensus size: 844
4273789 CCGCCCGCCT
* * * * * *
4273799 GCTCATTTCGTCGGTTGGCTTAGGCATACGGTGTTCATTCCCAGTCTAAGATCGGACCGAACCGA
1 GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
* * * * *
4273864 GGATTGTGGCAGCACATGGTGGGCTCGGGCATGTGCTGGTTCCACATTTTTCTTCGTC-GGGGCA
66 GGAGTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGAGGCA
* * * * * *
4273928 CCATCGCTGGAGAACCTAACCGGC-AGCATTGGGGTTTCGACGATCAGGGGGG-C-TGGGGGTGT
131 CCATCGCCGGAGAACCTAACCGACGA-CATTAGGGTTCCGGCGATCAGGGGGGCCGGGGGGGTGT
*
4273990 GCGCACATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
195 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
**
4274055 CCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
260 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * * *
4274120 AAGGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAAACTTGTACGCTTCGACTTTTTA
325 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTA
* **
4274185 GCTGAATTTTTTTGTGCATGCCAACAAAAATATAAGGATCATGTCTACCAAGTTTGGGGCCAAAA
390 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAA
* * * * * * *
4274250 CTCCATCTGAATAAATTTTAAAAAATCCTGAGCCGCAAAGAGTTTCAAAAATCGTGAAAAATAGA
455 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGA
*
4274315 AAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAG
520 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAG
* *
4274380 CCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCG
585 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * ** * *
4274445 ATCCACGGCTTGCGCATCCCATTTCTCTAGCCAACGTAGTGCCTGCCCACCC-GTC-CGCCTGCT
650 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCTGCCCGCCCACTCAC-CC-GCT
* *
4274508 CGTTTCGTCGGTTGGCTTAGGCATAC-GAAGTTCATTCCCAGTCTAAGATCAGATCGGACC-AAG
713 CATTTCGTCAGTTGGCTTAGGCATACAGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAAG
* *
4274571 TGTTACGGCTGCAGGATTGGCAGCATGCAGAGATGAACCTGACCGATCCCTGGCTTGCGATCCCG
778 -GTT---GCTGC---A---GCAGGAT-CAGACAT---CC---CCGA---CT--CTTGC-ATCCCG
* * *
4274636 CCCCTCTGGCTGGCTAAGCGCCCGCAC
820 CCCCTCTGACCGGAT-AGC-CCCGCAC
* * ** * * ** * ** * *
4274663 GCTCGCTCCGTGCATTGACTTATGCTTGTAGAGTTCATTCCCAGTCTAAGGTCAAACAGGACAGA
1 GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
* * * *
4274728 GG-GTTGCGGCAGCACATGCTTGGCTCGGGCATGTGCTGGTGCCACTTTTTTCTTCGCCTG-GGC
66 GGAG-TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGAGGC
* * * * *
4274791 ACCATCGTCGAAGCATCACCGGAGAACCTGACCAACGACACTAGGGTTCCGGCGATCGGGGGGGT
130 ACCA---TC---G-----CCGGAGAACCTAACCGACGACATTAGGGTTCCGGCGATCAGGGGGGC
* *
4274856 CAGGGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
184 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
**
4274921 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
249 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
4274986 CAGTAGCCATTAAAATGTCTGAAATGGCGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACT
314 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
4275051 TCGACTTTTTATCTGAATTTTTTTGTGCATGCCAAC-AAAATACAAGGATCCACATCTAACCAAG
379 TCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT-CACATCT-ACCAAG
** * * *
4275115 TTTGGCCGGTGAAAA-TCATTCTGAAAAAA-TTTACAAAATATCGCCGAACCAGCCAAAAAGTAT
442 TTTGG--GGCCAAAACTCCTTCCGAAAAAATTTTA-AAAA-ATC-CCGAACCA--CAAAAAGTTT
* * * *
4275178 CTAAAAATCATGAAAAATAAAAAAACGAGTCGTGC-TGTCATG-AAC-TCAAGTGAAGGCTTAAG
500 C-AAAAATCGTGAAAAAT-AGAAAACGAGTCGT-CTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
4275240 GGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
562 GGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* * * *
4275305 CAAACCCACCTACCACCCTATCAATCCACGGCTTACGCATCCCGTCTCTCTGGC-CAGCGTA--G
627 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGA-CGTAGTG
* *
4275367 --TGCCCG--CA--CACCCGCTC-GTTCTGTCAGTTGGCTTAGGCATCCA-AAGTTCATTCCCAG
691 CCTGCCCGCCCACTCACCCGCTCATTTC-GTCAGTTGGCTTAGGCATACAGAAGTTCATTCCCAG
* * ** * * * * * *** *
4275424 TCTAAGAT-TGAATCGGATCGACTGTTGCGGTAGCAGGATCGGTAGCA-CACAGA--GGGGGATC
755 TCTAAGATCAG-ATCGGACCGAAGGTTGCTGCAGCAGGATCAG-A-CATCCCCGACTCTTGCATC
* *
4275485 CAG---C-C-GACC--ATA-CCCCACAC
817 CCGCCCCTCTGACCGGATAGCCCCGCAC
*
4275505 GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGATCATTCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A--
* *
4275570 CCCAGTCTAAGATCAGACTGGACGGAGGGTTGTGGCAGCACATGCTGGGCTGGGGCATGTGCTGG
57 -CC-G-----GA-C---C--GA-GGA--G-TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * *
4275635 TGCCACATTTTTCTTCG-CAAAGGCACCATCACCGGAGAACCTAACCGACGGA-ATTGGGGTTCC
105 TGCCACATTTTTCTTCGTCAGAGGCACCATCGCCGGAGAACCTAACCGAC-GACATTAGGGTTCC
*
4275698 GGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
169 GGCGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* *
4275763 ATATTGGCCCCCTATCCCTCGTCAAACCTCAAGAACTCACACCCACTTAAAGAGCATTTGAGATT
234 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * * * *
4275828 TTACAGGTTTGCTACCAATAGCCATTAAAGTGTTTGAAATAGTGACACTTTTTTCAAATGGTCAC
299 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
4275893 AAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAACAAAAATACAAGGA
364 AAAATCTTGTACACTTCGACTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGA
** * * * *
4275958 TCATGTCTACCAAGTTTGGGGTCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCATAA
428 TCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAA
** *
4276023 AAAGTTTCAAAAATCGTTTAAAATAGAAAACGAGTCGTCTTGCCATGAAACTCCACGTGAAGGCT
493 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * * *
4276088 GAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATC
558 TAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * * *
4276153 TGCCTAAACACATCTACTACCCTATCGATCTACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTA
623 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTA
* * * *
4276218 GTGCCCGCCCGCCCACTCGCCCGCTCATTTTGACAGTTGGCTTAGGCATACAGAA-TTCATTCCC
688 GTGCCTGCCCGCCCACTCACCCGCTCATTTCGTCAGTTGGCTTAGGCATACAGAAGTTCATTCCC
* *
4276282 AGTCTAAGATCAGATCGAACCGAAGGTTGCTGCAGCAGGATC-GACATCCCCGACTTTTGCATCC
753 AGTCTAAGATCAGATCGGACCGAAGGTTGCTGCAGCAGGATCAGACATCCCCGACTCTTGCATCC
*
4276346 CGCCCCTCTGACCGGTTGAGCACCCGCAC
818 CGCCCCTCTGACCGGAT-AGC-CCCGCAC
* * *
4276375 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGGTCGGACCGGACCGA
1 GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
* **
4276440 GTGA-TGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTC-GAGGC
66 G-GAGTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGAGGC
* * *
4276503 ACCATCGCCGGAGAACCTGACCGGCGACATTAGGGTTCCGGTGATCAGGGGGGCCGGGGGGGTGT
130 ACCATCGCCGGAGAACCTAACCGACGACATTAGGGTTCCGGCGATCAGGGGGGCCGGGGGGGTGT
* * * *
4276568 GCGCACATGATGTGTGGTGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCGCTCATCAAA
195 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
4276633 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCAATT
260 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
4276698 AAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTA
325 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTA
** * *
4276763 GCTGAATTTTTTTGTGTGTGCCAAAAAAAATACAAGGATCGCATCTACCAAGTTTGGGGCCAAAA
390 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAA
* * ** * **
4276828 ATCCTTCCGAAAAAATTTTGAAAAATCTTGAATCACAAAAAGTTTTGAAAATCGTGAAAAATAGA
455 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGA
4276893 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAG
520 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAG
** *
4276958 CCATAAAAATGGCATTGGCACACAGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCG
585 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * * *
4277023 ATCCACGGCTTGCGCATCCTGTCTCTTTGGCTGGCGTTGTGCCTGCCCGCCCGCCCACCCGCTCA
650 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCTGCCCGCCCACTCACCCGCTCA
* * * * * * *
4277088 TTTCGTCGGTTGGCTTAAGCATAC-GGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGT
715 TTTCGTCAGTTGGCTTAGGCATACAGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAAGGT
4277152 TGC
780 TGC
4277155 GACAGCGCAT
Statistics
Matches: 2121, Mismatches: 270, Indels: 223
0.81 0.10 0.09
Matches are distributed among these distances:
842 49 0.02
843 338 0.16
844 296 0.14
845 2 0.00
847 3 0.00
848 5 0.00
849 3 0.00
850 20 0.01
851 16 0.01
852 141 0.07
853 4 0.00
854 10 0.00
855 10 0.00
856 20 0.01
857 252 0.12
858 35 0.02
859 16 0.01
860 80 0.04
861 5 0.00
863 3 0.00
864 106 0.05
865 11 0.01
866 8 0.00
867 6 0.00
868 59 0.03
869 3 0.00
870 54 0.03
872 3 0.00
874 4 0.00
875 89 0.04
876 18 0.01
877 225 0.11
878 15 0.01
879 20 0.01
880 9 0.00
881 6 0.00
882 1 0.00
883 138 0.07
884 18 0.01
885 19 0.01
886 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (844 bp):
GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
GGAGTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGAGGCA
CCATCGCCGGAGAACCTAACCGACGACATTAGGGTTCCGGCGATCAGGGGGGCCGGGGGGGTGTG
CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
CTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAG
CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAC
TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAA
AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGC
CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
TCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCTGCCCGCCCACTCACCCGCTCAT
TTCGTCAGTTGGCTTAGGCATACAGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAAGGTT
GCTGCAGCAGGATCAGACATCCCCGACTCTTGCATCCCGCCCCTCTGACCGGATAGCCCCGCAC
Found at i:4278341 original size:540 final size:539
Alignment explanation
Indices: 4277269--4278347 Score: 1676
Period size: 540 Copynumber: 2.0 Consensus size: 539
4277259 CCGGCGATCT
*
4277269 GGGGGCCGGGGGCTGTGCGCACAAGATGTGTGATGGGTGCTGGTACTTGACCTTATATTAGCCCC
1 GGGGGCCGGGGGCTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGACCTTATATTAGCCCC
* * * * * * *
4277334 CTGTCCCTCATCAAACCTTGAGAACTCACACCCGCTTGAAGTGCATTTGAGATTTTACAGGTTTG
66 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGCGCATATGAGATTTTACAAGTTTG
* *
4277399 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGCA
131 CTGCCAGTAGCCAATAAAATGTCTGAAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGCA
* * *
4277464 CACTTTGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCA
196 CACTTCGAGTTTTTAGCTGACTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAAGTCTACCA
* * * *
4277529 TGTTGGGAGCCAAGATTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAA
261 AGTTGGCAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAA
*
4277594 ATCATGAAAAATAGAGAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
326 ATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
***
4277659 GTATGAATTTACAAGCCATAAAAATGGTATTGGCACGCAGAAGTATGAAGATGTGCCTAAACCCA
391 GTATGAATTTACAAGCCATAAAAATCACATTGGCACGCAGAAGTATGAAGATGTGCCTAAACCCA
* * * *
4277724 CCTACCACCCTATCGATCCATGACTTGCGCATCTCGTCTCTCTCTCCGACGTAGTGCCCACCCGC
456 CCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTCGCCGACGTAGTGCCCACCCAC
*
4277789 TCGCCCGCCAGCTCGTTTC
521 CCGCCCGCCAGCTCGTTTC
* * * * *
4277808 GGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
1 GGGGGCCGGGGGCTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTT-GACCTTATATTAGCCC
4277873 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGCGCATATGAGATTTTACAAGTTT
65 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGCGCATATGAGATTTTACAAGTTT
* * * *
4277938 TCTGCCAGTAGCCAATAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAGTCTTGT
130 GCTGCCAGTAGCCAATAAAATGTCTGAAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGC
* *
4278003 TCACTTCGAGTTTTTAGCTGACTTTTTTTGTGCATGCCAAAAAAAACT-CAAGGATCAGGTCTAC
195 ACACTTCGAGTTTTTAGCTGACTTTTTTTGTGCATGCCAAAAAAAA-TACAAGGATCAAGTCTAC
**
4278067 CAAGTTTGGCA-CCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTG
259 CAAG-TTGGCAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTG
* *
4278131 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTGAGGGACC
323 AAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
4278196 ATTGTATGAATTTACAAGCCATAAAAATCACATTGGTATGCAGAAGTATGAAGATGTGCCTAAAC
388 ATTGTATGAATTTACAAGCCATAAAAATCACATTGGCACGCAGAAGTATGAAGATGTGCCTAAAC
* * ** *
4278261 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGGGTAGTGCCCGCC
453 CCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTCGCCGACGTAGTGCCCACC
*
4278326 CACCCGCCTGCCAGCTCGTTTC
518 CACCCGCCCGCCAGCTCGTTTC
4278348 ATTGGTTGGC
Statistics
Matches: 488, Mismatches: 49, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
539 44 0.09
540 438 0.90
541 6 0.01
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (539 bp):
GGGGGCCGGGGGCTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGACCTTATATTAGCCCC
CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGCGCATATGAGATTTTACAAGTTTG
CTGCCAGTAGCCAATAAAATGTCTGAAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGCA
CACTTCGAGTTTTTAGCTGACTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAAGTCTACCA
AGTTGGCAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAA
ATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATCACATTGGCACGCAGAAGTATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTCGCCGACGTAGTGCCCACCCAC
CCGCCCGCCAGCTCGTTTC
Found at i:4278558 original size:26 final size:26
Alignment explanation
Indices: 4278521--4278572 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
4278511 TTGACTTAGA
4278521 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
* *
4278547 CATACGGTGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
4278573 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:4282894 original size:26 final size:26
Alignment explanation
Indices: 4282858--4282910 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4282848 GTTGACTTAG
4282858 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
4282884 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4282910 G
1 G
4282911 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4284640 original size:455 final size:457
Alignment explanation
Indices: 4283802--4284701 Score: 1365
Period size: 455 Copynumber: 2.0 Consensus size: 457
4283792 CAGACCGGAC
* * * * ***
4283802 CGAGGGTTACAATAGCACATGCTGGGCTGGGGCATGTGCCGGTGTCGCATTTTTCTTCGTTGGGG
1 CGAGGGTTACAACAGCACATGCTGGGCTCGGGCATGTGCCGGTGCCACATTTTTCTTCACCGGGG
4283867 CACCATCGCCAGAGCATCACCGAAGAACCTGACCGACAGCATTGGGGTTCCAGTGATCGGGCAGG
66 CACCATCGCCAGAGCATCACCGAAGAACCTGACCGACAGCATTGGGGTTCCAGTGATCGGGCAGG
* * * * *
4283932 TCGGGGGGGCTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCT
131 GCCGGGGGGCTATGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
4283997 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
196 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCT
*
4284062 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGTCACTTTTTTCAAATGGTCACAAAATCTTATACA
261 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACA
* * *
4284127 CTTCGAGTTTTTGGCAAAATTTTTTAGTGCATGCCAACAAAAATACTAGGATCACGTCTACCAAG
326 CTTCGAATTTTTAGCAAAATTTTTTAGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
** *
4284192 TTTGGAGCC-AAAACTCCTTTCGAAAAAATTTAAAAAAATCTCGAACCGTAAAAAGATCATACTG
391 -TTCAAGCCAAAAACTCCTTTCGAAAAAATTTAAAAAAATCTCAAACCGTAAAAAGATCATACTG
4284256 GTT
455 GTT
* *
4284259 CGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGG
1 CGAGGGTTACAACAGCACATGCTGGGCTCGGGCATGTGCCGGTGCCACATTTTTCTTCACCGGGG
* * * * * * *
4284324 TACCATCGCCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGG-GGG
66 CACCATCGCCAGAGCATCACCGAAGAACCTGACCGACAGCATTGGGGTTCCAGTGATCGGGCAGG
* * *
4284388 GCCGGGTGG-TGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCT
131 GCCGGGGGGCTATGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
** ** *
4284452 ATCCCTCATCAAATTTTGAGAACTCACACCCCCTTAAAAAGCATTTTAGATTTTACAGGTTTGCT
196 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCT
* *
4284517 GCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
261 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACA
** * *
4284582 CTTCGAATTTTTAGCTGAATTTTTTTGTTCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
326 CTTCGAATTTTTAGCAAAATTTTTTAGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* *
4284647 TTCAAGCCAAAAACTCCTTTCGAAAAGATTTTAAAAAATCTCAAACCGTAAAAAG
391 TTCAAGCCAAAAACTCCTTTCGAAAAAATTTAAAAAAATCTCAAACCGTAAAAAG
4284702 TTTCAAAAAT
Statistics
Matches: 397, Mismatches: 45, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
454 6 0.02
455 272 0.69
456 8 0.02
457 111 0.28
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (457 bp):
CGAGGGTTACAACAGCACATGCTGGGCTCGGGCATGTGCCGGTGCCACATTTTTCTTCACCGGGG
CACCATCGCCAGAGCATCACCGAAGAACCTGACCGACAGCATTGGGGTTCCAGTGATCGGGCAGG
GCCGGGGGGCTATGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACA
CTTCGAATTTTTAGCAAAATTTTTTAGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
TTCAAGCCAAAAACTCCTTTCGAAAAAATTTAAAAAAATCTCAAACCGTAAAAAGATCATACTGG
TT
Found at i:4287835 original size:26 final size:26
Alignment explanation
Indices: 4287799--4287874 Score: 152
Period size: 26 Copynumber: 2.9 Consensus size: 26
4287789 GACTTAGGCA
4287799 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
4287825 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
4287851 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
4287875 GGTTATGGCA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:4289090 original size:900 final size:900
Alignment explanation
Indices: 4284259--4289400 Score: 6719
Period size: 903 Copynumber: 5.7 Consensus size: 900
4284249 CATACTGGTT
* *
4284259 CGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGG
1 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
* * * * *
4284324 TACCATCGCCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGG
66 CACCATCGTCGGAGCATCATCGGAGAACCTGACTGACGGCATTGGGGTTCCGGAGATCGGGGGCG
* * * *
4284389 CCGGGTGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTAT
131 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
** * * *
4284454 CCCTCATCAAATTTTGAGAACTCACACCCCCTTAAAAAGCATTTTAGATTTTACAGGTTTGCTGC
196 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
4284519 TAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
261 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
4284584 TCGAATTTTTAGCTGAATTTTTTTGTTCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-T
326 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTT
*** *
4284648 TCAAGCCAAAAACTCCTT-TCGAAAAGATTTTAAAAAAT-CTCAAACCGTAAAAAGTTTCAAAAA
391 TGGGGCC-AAAACTCCTTCTCGAAAAAATTTTAAAAAATCCT-AAACCGTAAAAAGTTTCAAAAA
* * * *
4284711 TCATGAAAAATAGAAAACTAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCGTTG
454 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
4284776 TATCAATTTACAAGCCATAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGCCTAAACCCAA
519 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * *
4284841 CTACCACCCGATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTATTGCTCGCCCGCC
584 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * * * * * * * *
4284906 CGTCCGCTCGCTTCGTCGGATGGCTTAAGCATATGGAGTTCATTCCCAATCTAAGATCGGACCAG
649 CGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
** * * * * * * *
4284971 ACCGA-GGCTTGCAGCAGCAGGATCGATAGCACGTAGAGGGGGACCTGGCTGATCCTCGGCTTAC
714 AATGATGG-TTACGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTAC
* * * * *
4285035 GCATCCCACCCGTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
778 GAATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
* * *
4285100 AAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAAC
843 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* *** ** * *
4285158 CGAGGGTTGCAATAGCACATGCTGACCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGG
1 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
* * * * *
4285223 CACCATTGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATTGGGGGGG
66 CACCATCGTCGGAGCATCATCGGAGAACCTGACTGACGGCATTGGGGTTCCGGAGATCGGGGGCG
* * *
4285288 CCGAGGGGTGGGCGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
131 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
4285353 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGC
196 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * **
4285418 CAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAAAATTGTACACT
261 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
4285483 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCCCATCTACCAAGTT
326 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTT
* * ** **
4285548 TGGGGCCAAAACTCCTTC-CAAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATC
391 TGGGGCCAAAACTCCTTCTCGAAAAAATTTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATC
* *
4285612 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTGCACGTGAAGGCTTAAAGGACCATTGTA
456 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
**
4285677 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
521 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
4285742 ACCACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCAGCCCGCCCT
586 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCG
* *
4285807 CCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACT
647 CCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * * * * *
4285872 GG-ATCACGGGTTACAGCAGCAGGATCGGTAGCACACAGAAGAGGATCCGACCGATCCCCAGCTT
712 GGAATGA-TGGTTACGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
* * * * ** *
4285936 GCGCATCCGGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTAATGGGTTGACTTAGGCACA
776 ACGAATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
* * * ** * *
4286001 CGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTTCGAGTCTAAGATTAGATCAGAC
841 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* *** * * * * * * ** **
4286061 CAAGGGTTGTTGCAGCCCATGCTAGGTTCGGGTAGGTGATGGCACCGCATTTTTCTTCGTCGGGG
1 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
*
4286126 CACCATCGTCGGAGCATCATCGGAGAACCTGA-TCGATGGCATTGGGGTTCC-GACGATCGGGGG
66 CACCATCGTCGGAGCATCATCGGAGAACCTGACT-GACGGCATTGGGGTTCCGGA-GATCGGGGG
*
4286189 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
129 CGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
4286254 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCT
194 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
4286319 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAGTCTTGTACA
259 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
4286384 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTTCCAAG
324 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAG
** * ** * * *
4286449 TTTGGGGCCAAAA-TGTTTTTAAAAAAAAGTTTAAAAAAT-CTCGAACCTTAAAAAGTTTCAAAA
389 TTTGGGGCCAAAACTCCTTCTCGAAAAAATTTTAAAAAATCCT-AAACCGTAAAAAGTTTCAAAA
* *
4286512 ATCGTGAAAAATA-AGAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTCAAGGGACCAT
453 ATCGTGAAAAATAGA-AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* ** *
4286576 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTTGTAATATGAAGATGTGCCTAAACCC
517 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * * * * * *
4286641 ACCTACCACCATTTTGATCCACGACTTGCGTATCCCGTTTCTCTGGCCGGCATAGTGCCCGCCCG
582 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-
*
4286706 CCTGCCCGCCCGCTCGTTTCGTCTGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
644 CC-GCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* ** * * * * * *
4286771 TACTAG-ATCAAAGGTTACGACAGCAGGATCAACAGCACGCAGAGGGGGACCCGACCGATCCCTG
708 GACCGGAAT-GATGGTTACGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCGACCGATCCCCG
* * * * * *
4286835 GCTTATGGATCGCGCCCCTCTGGCCGGCTGAGCGCCCACAAGCTCGTTTCGTGGGTTGACTTAGG
772 GCTTACGAATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* * * **
4286900 CATACAGAGTTCATTCCCAGTCTAAGCATA-GGAGTTCATTCTCGGTCTAAGATTAGACCGGAC
837 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * *
4286963 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGG
1 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
* * * *
4287028 CACCATCGCCGGAG-AACATGCGG-G---C--A--GACGGCATTGGGGTTCCGGCGATCAGGGG-
66 CACCATCGTCGGAGCATCAT-CGGAGAACCTGACTGACGGCATTGGGGTTCCGGAGATCGGGGGC
* * * *
4287083 GCTGGGGGGTGTCCGCACATGATGCGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
130 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
4287148 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTG
195 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
4287213 CCAATAGCCATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
260 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * **
4287278 TTCGATTTTTTAGCTCAATTTTTTTTTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGT
325 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGT
* * * * **
4287343 TTGGGGCCAAAACGCCTTC-CGAAAAAATTTTAAAAAATCCCAAATCGAAAAAAGTTTTGAAAAT
390 TTGGGGCCAAAACTCCTTCTCGAAAAAATTTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAAT
* *
4287407 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGAGCATTGT
455 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
4287472 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAATCCCACC
520 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
4287537 TACCACCCTATCAATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGGCTTAGTGCCCGCCCGCTC
585 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG---
* *
4287602 ACCCGCCTGCCTGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATT
647 -CCCG-C--CC-GCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
4287667 GGACCGGAATGATGGTT-CTGGCAGCAAGATCGATAGCACGTAGAGGGGGACCCGATCGATCCTC
707 AGACCGGAATGATGGTTAC-GGCAGCAGGATCGATAGCACGCAGAGGGGGACCCGACCGATCCCC
* **
4287731 GGCTTGC-ACATCCCGCCCCTCTGGCCGGCTGAGCGCATGCACGCTCATTTCGTGGGTTGACTTA
771 GGCTTACGA-ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTA
* *
4287795 GGCATACGGAGTTCATTCCCAGTCTAAGCGTACGGAGTTCATTCCCAGTCTAAGCGTACGGAGTT
835 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G--
* *
4287860 CATTCCCAGTC
894 -A---CCGGAC
** * * ***
4287871 TAAGGGTTATGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTTGGGG
1 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
* ** * * *
4287936 CACCATCGTTGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCAGAGATCGGGGGCT
66 CACCATCGTCGGAGCATCATCGGAGAACCTGACTGACGGCATTGGGGTTCCGGAGATCGGGGGCG
* * * * * *
4288001 CGGGGGGCGTGTGCGCACATGATGTGTGGTGGGTGTTGGGACTTGGCCCTTTTATTGGCCCCCTA
131 CCGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
4288066 TCCCTCATCAACCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
195 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
4288131 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
260 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* ***
4288196 TTCGAGTTTTTAG-TCGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATTGTATCTACCAAG
325 TTCGAGTTTTTAGCT-GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAG
** * *
4288260 TTCAGGGCCAAAATTCCTTCT-GAAAAAATTTTAAAAAATCCTAAATCGTAAAAAGTTTCAAAAA
389 TTTGGGGCCAAAACTCCTTCTCGAAAAAATTTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAA
* * ** *
4288324 TCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGTTAGCATTG
454 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * *
4288389 TATGAATTTAGAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCCAATCCCAC
519 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* *
4288454 CTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCC
584 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * * * * *
4288519 CGCCTGTTCGTTTCGTCGGTTGGTTTAGGCATACAGAGTTCATTCCCAGTCGAAGATCAGACCGG
649 CGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
** * * * *
4288584 AATGATGGTTGTGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCTGCTTACG
714 AATGATGGTTACGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACG
* * * * *
4288649 AATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACACTTATTTCGTGGGTTGAGTTAGGCATATGG
779 AATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGG
* *
4288714 AGTTCATTCCCAGTCTAAGCGTACGGAGTTCATTCCCAATCTAAGATCGGACCGGAC
844 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* ***
4288771 CGAGGGTTATGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGG
1 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
* * *
4288836 CACCATCGTCGGAGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGAGATCGGGGGCT
66 CACCATCGTCGGAGCATCATCGGAGAACCTGACTGACGGCATTGGGGTTCCGGAGATCGGGGGCG
* * * * * * *
4288901 CGGGGGGCGTGTGCGCACATGATGTGTGGTGGGCGTTGGGACTTGGCCCTTTTATTGGCCCCCTA
131 CCGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
4288966 TCCCTCATCAACCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTG
195 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
4289031 CCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCTAAA-GGTCACAAAATCTTGTACA
260 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACA
* * * * *
4289095 CTTCAAGTTTTTAGTTGAGTTTTTTTGTGCATGCCAAAAAAAATTCAAGGATCA-AGTCTACCAA
324 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACA-TCTACCAA
* * **
4289159 ATTTGGGGCCAAAAATCCTT-TCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
388 GTTTGGGGCCAAAACTCCTTCTCGAAAAAATTTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAA
4289223 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
453 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * * *
4289288 GTATGACTTTACAAGCCATAAAAATGGCATTGGTAGGCCGAAATATGAAGATGTGCCTAAACCCA
518 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * *
4289353 CCTACCACCGTATCTATCCACAGCTTGCGCATCCCATCTCTCTGGCCG
583 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
4289401 TCGGGGCACC
Statistics
Matches: 3732, Mismatches: 446, Indels: 129
0.87 0.10 0.03
Matches are distributed among these distances:
889 1 0.00
890 2 0.00
891 1 0.00
893 459 0.12
894 29 0.01
895 1 0.00
896 4 0.00
897 179 0.05
898 22 0.01
899 573 0.15
900 590 0.16
901 10 0.00
902 103 0.03
903 958 0.26
904 3 0.00
905 1 0.00
906 1 0.00
907 1 0.00
908 75 0.02
909 4 0.00
910 210 0.06
911 2 0.00
912 1 0.00
913 1 0.00
914 5 0.00
916 25 0.01
917 7 0.00
918 464 0.12
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
CACCATCGTCGGAGCATCATCGGAGAACCTGACTGACGGCATTGGGGTTCCGGAGATCGGGGGCG
CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTT
TGGGGCCAAAACTCCTTCTCGAAAAAATTTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATC
GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
CCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAA
TGATGGTTACGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGAA
TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAG
TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
Found at i:4291560 original size:903 final size:901
Alignment explanation
Indices: 4289410--4292652 Score: 5375
Period size: 899 Copynumber: 3.6 Consensus size: 901
4289400 GTCGGGGCAC
* * * *
4289410 CATCACCGGAGAACCTAACCGGCGGCATTGGGGTTTC-GACGATCGAGGGGGC-CGGGGG-GTGT
1 CATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGA-GATC--GGGGGCTCGGGGGCGTGT
* * * * * * *
4289472 GCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
63 GCGCACATGATGTGTGGTGGGTGTTGGGACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAC
* * *
4289537 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATT
128 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCCATT
* * *
4289602 AAAGTGTTTGAAATTGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTA
193 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * **
4289667 G-CTGAATTTTTTTGTGCATGCCAACAAAAAGACAAGGA-T-CACGTCTACCAAGTTTGGGGCCA
258 GTC-GAATTGTTTTGTGCATGCCAACAAAAATACAAGGATTGTA-GTCTACCAAGTTCAGGGCCA
* * * **
4289729 AAACTCCTTC-GAAAACAATTTTAAAAAATCCTGAACCATAAAAAGTTTTGAAAATC-GTGAAAA
321 AAATTCCTTCTGAAAA-AATTTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCTGTGAAAA
4289792 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
385 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
4289857 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAATCCCACCTACCACCC
450 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAATCCCACCTACCACCC
4289922 TATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCCCGCTC
515 TATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCCCGCTC
*
4289987 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCGAAGATCAGACCGGAATGATGGT
580 GTTTCGTCGGTTGGTTTAGGCATACGGAGTTCATTCCCAGTCGAAGATCAGACCGGAATGATGGT
*
4290052 TGTGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGATCAATCCCCTGCTTGCGCATCCCGCC
645 TGTGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCTGCTTGCGCATCCCGCC
*
4290117 CCTCTGGCCGGCTGAGTGCCCGCACGCTTATTTCGTGGGTTGAGTTAGGCATATGGAGTTCATTC
710 CCTCTGGCCGGCTGAGTGCCCGCACACTTATTTCGTGGGTTGAGTTAGGCATATGGAGTTCATTC
4290182 CCAGTCTAAGCGTACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTATGGCAGCA
775 CCAGTCTAAGCGTACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTATGGCAGCA
4290247 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGTCGGAG
840 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGTCGGAG
*
4290309 CATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGAGATCGGGGGCTCGGGGGGGGTGTGC
1 CATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGAGATCGGGGGCTC-GGGGGCGTGTGC
* *
4290374 GCACATGATGTTGTGGTGGGTGTTAGGACTTGGCCCTTTCATTGGCCCCCTATCCCT-ATCAA-C
65 GCACATGATG-TGTGGTGGGTGTTGGGACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAACC
4290437 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGA-ATTTTACAAGTTTGCTGACCAATAGCCATT
129 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTG-CCAATAGCCATT
4290501 AAAGTGTCTGAAAT-GGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACACTT-GAGTTTTT
193 AAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
4290564 AGTCGAATTGTTTTGTGCATGCCCAACCAAAAATACAAGGATTGTAGTCTA-CAAGTTCAGGGCC
257 AGTCGAATTGTTTTGTGCATG-CCAA-CAAAAATACAAGGATTGTAGTCTACCAAGTTCAGGGCC
* *
4290628 AAAATTCCTTCTGAAAAAATTTT-AAAAATCCTAAATCGTAAAAAAG-TTCAAAAATCATGGGAA
320 AAAATTCCTTCTGAAAAAATTTTAAAAAATCCTAAACCGT-AAAAAGTTTCAAAAATC-TGTG--
* ** *
4290691 AAAAATAGAAAACGAGTCGTCTTGCCATGAAAC-TCTCGTGAAGGCTTAAGTTAGCATTGTATGA
381 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
4290755 ATTTAGAAGCCATTAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAATCCCACCTAC
446 ATTTACAAGCCA-TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAATCCCACCTAC
**
4290820 CACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCTTGCCCGCC
510 CACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCC
* *
4290885 CGTTCGTTTCGTCGGTTGGTTTAGGCATACGGAGTTCATTCCCAGTCGAAGATCAGACTGGAATG
575 CGCTCGTTTCGTCGGTTGGTTTAGGCATACGGAGTTCATTCCCAGTCGAAGATCAGACCGGAATG
*
4290950 ATGGTTGTGGCAGCAAGATCGGTAGCACGCAGAGAGGGACCCGATCGATCCCCTGCTTGCGCATC
640 ATGGTTGTGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCTGCTTGCGCATC
4291015 CCGCCCCTCTGGCCGGCTGAGTGCCCGCACACTTATTTCGTGGGTTGAGTTAGGCATATGGAGTT
705 CCGCCCCTCTGGCCGGCTGAGTGCCCGCACACTTATTTCGTGGGTTGAGTTAGGCATATGGAGTT
4291080 CATTCCCAGTCTAAGCGTACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTATGG
770 CATTCCCAGTCTAAGCGTACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTATGG
4291145 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGTCGG
835 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGTCGG
4291210 AG
900 AG
*
4291212 CATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGAGATCGGGGGCTCGGGGGGCGTGTGC
1 CATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGAGATCGGGGGCTC-GGGGGCGTGTGC
*
4291277 GCACATGATGTGTGGTGGGTGTTGGGAATTGGCCCTTTTATTGGCCCCCTATCCCTCATCAACCC
65 GCACATGATGTGTGGTGGGTGTTGGGACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAACCC
* *
4291342 TCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
130 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCCATTAA
4291406 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGT
195 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGT
4291471 CGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATTGTA-TCTACCAAGTTCAGGGCCAAAAT
260 CGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATTGTAGTCTACCAAGTTCAGGGCCAAAAT
* *
4291535 TCCTTCTGAAAAAATTTTAAAAAATCCTAAATCGTAAAAAGTTTCAAAAATC-ATGAAAAATAGA
325 TCCTTCTGAAAAAATTTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCTGTGAAAAATAGA
** * *
4291599 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGTTAGCATTGTATGAATTTAGAAG
390 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
4291664 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAATCCCACCTACCACCCTATCG
455 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAATCCCACCTACCACCCTATCG
4291729 ATCCACGGCTTACGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCCCGCTCGTTTC
520 ATCCACGGCTTACGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCCCGCTCGTTTC
4291794 GTCGGTTGGTTTAGGCATACGGAGTTCATTCCCAGTCGAAGATCAGACCGGAATGATGGTTGTGG
585 GTCGGTTGGTTTAGGCATACGGAGTTCATTCCCAGTCGAAGATCAGACCGGAATGATGGTTGTGG
*
4291859 CAGCAAGATCAGTAGCACGCAGAGGGGGACCCGATCGATCCCCTGCTTGCGCATCCCGCCCCTCT
650 CAGCAAGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCTGCTTGCGCATCCCGCCCCTCT
4291924 GGCCGGCTGAGTGCCCGCACACTTATTTCGTGGGTTGAGTTAGGCATATGGAGTTCATTCCCAGT
715 GGCCGGCTGAGTGCCCGCACACTTATTTCGTGGGTTGAGTTAGGCATATGGAGTTCATTCCCAGT
*
4291989 CTAAGCGTACGGAGTTCATTCCCAATCTAAGATCGGACCGGACTGAGGGTTATGGCAGCACATGC
780 CTAAGCGTACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTATGGCAGCACATGC
4292054 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGTCGGAG
845 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGTCGGAG
4292111 CATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGAGA--------TCGGGGGCGTGTGCG
1 CATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGAGATCGGGGGCTCGGGGGCGTGTGCG
*
4292168 CACATGATGTGTGGTGGGTGTTGGCACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAACCCT
66 CACATGATGTGTGGTGGGTGTTGGGACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAACCCT
4292233 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCCATTAAA
131 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCCATTAAA
*
4292298 GTGTCTGAAATGGGGACACTTTTTTCTAAA-GGTCACAAAATCTTGTACACTTCAAGTTTTTAGT
196 GTGTCTGAAATGGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGT
* * ** ** *
4292362 TGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGA-TCAAGTCTACCAAGTTTGGGGCCAAAAA
260 CGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATTGTAGTCTACCAAGTTCAGGGCCAAAAT
**
4292425 TCCTT-TCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTGTGAAAAATAG
325 TCCTTCT-GAAAAAATTTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCTGTGAAAAATAG
*
4292489 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGGTATGACTTTACA
389 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT-GTATGAATTTACA
* * * *
4292554 AGCCATAAAAATGGCA-TGGCA-GCCGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTAT
453 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAATCCCACCTACCACCCTAT
* *
4292617 CGATCCACAGCTTGCGGCATCCCGTCTCTCTGGCCG
518 CGATCCACGGCTTAC-GCATCCCGTCTCTCTGGCCG
4292653 TCGGGGCACC
Statistics
Matches: 2222, Mismatches: 87, Indels: 78
0.93 0.04 0.03
Matches are distributed among these distances:
889 3 0.00
890 219 0.10
891 214 0.10
892 30 0.01
897 6 0.00
898 50 0.02
899 669 0.30
900 110 0.05
901 57 0.03
902 143 0.06
903 654 0.29
904 67 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
CATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGAGATCGGGGGCTCGGGGGCGTGTGCG
CACATGATGTGTGGTGGGTGTTGGGACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAACCCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTC
GAATTGTTTTGTGCATGCCAACAAAAATACAAGGATTGTAGTCTACCAAGTTCAGGGCCAAAATT
CCTTCTGAAAAAATTTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCTGTGAAAAATAGAA
AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAATCCCACCTACCACCCTATCGA
TCCACGGCTTACGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCG
TCGGTTGGTTTAGGCATACGGAGTTCATTCCCAGTCGAAGATCAGACCGGAATGATGGTTGTGGC
AGCAAGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCTGCTTGCGCATCCCGCCCCTCTG
GCCGGCTGAGTGCCCGCACACTTATTTCGTGGGTTGAGTTAGGCATATGGAGTTCATTCCCAGTC
TAAGCGTACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTATGGCAGCACATGCT
GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGTCGGAG
Found at i:4293454 original size:26 final size:26
Alignment explanation
Indices: 4293418--4293470 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
4293408 GTTGACTTAG
*
4293418 GCATACTGAGT-TCATTCCCAGTCTAA
1 GCATACGGAGTGT-ATTCCCAGTCTAA
4293444 GCATACGGAGTGTATTCCCAGTCTAA
1 GCATACGGAGTGTATTCCCAGTCTAA
4293470 G
1 G
4293471 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTGTATTCCCAGTCTAA
Found at i:4293794 original size:26 final size:26
Alignment explanation
Indices: 4293764--4293816 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4293754 GTTGACTTAG
*
4293764 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4293790 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4293816 G
1 G
4293817 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4293837 original size:173 final size:172
Alignment explanation
Indices: 4293323--4293837 Score: 726
Period size: 173 Copynumber: 3.0 Consensus size: 172
4293313 TAGGATCGAT
* * * * * *
4293323 AGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCCTCCCCTCTGGTCGGTTGAGCG
1 AGCACGCAGAGGGGGACCCGGTCGATCCCC-GCTTGCGCATCCCACCCCTCTGGCCGGCTGAGAG
* * * *
4293388 CCCGCACGCTCGCTTCGTGTGTTGACTTAGGCATACTGAGTTCATTCCCAGTCTAAGCATACGGA
65 CCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
*
4293453 GTGT-ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGC
130 GT-TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGC
* * * *
4293496 AGCACGCAGAGGGGGACCTGGTCGATCCCCGACCTGCGCATCCCGCCCTTCTGGCCGGCTGAGAG
1 AGCACGCAGAGGGGGACCCGGTCGATCCCCG-CTTGCGCATCCCACCCCTCTGGCCGGCTGAGAG
*
4293561 CCTGCACGCTCGTTTCGTGGGTTGACTTAGGCACACGGAGTTCATTCCCAGTCTAAGCATACGGA
65 CCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
*
4293626 GTTCATTGCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGC
130 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGC
* * * * *
4293669 AGCACGCAGAAGGGGACCCGATCGATCCCCAGCTTGCGCATCCCACCCCTCTGACCGACTGAGTG
1 AGCACGCAGAGGGGGACCCGGTCGATCCCC-GCTTGCGCATCCCACCCCTCTGGCCGGCTGAGAG
* * * * *
4293734 CCTGTATGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATACGGA
65 CCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* *
4293799 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
130 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
4293838 CAACAGCACA
Statistics
Matches: 305, Mismatches: 34, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
172 2 0.01
173 302 0.99
174 1 0.00
ACGTcount: A:0.19, C:0.30, G:0.29, T:0.23
Consensus pattern (172 bp):
AGCACGCAGAGGGGGACCCGGTCGATCCCCGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGAGC
CTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGC
Found at i:4295526 original size:26 final size:26
Alignment explanation
Indices: 4295497--4295549 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
4295487 GTTGACTTAC
4295497 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
4295523 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4295549 G
1 G
4295550 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4296377 original size:26 final size:26
Alignment explanation
Indices: 4296348--4296400 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4296338 GTTGACTTAG
4296348 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
4296374 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
4296400 G
1 G
4296401 ATCGGATTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:4296560 original size:26 final size:26
Alignment explanation
Indices: 4296531--4296583 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4296521 GTTGACTTAG
4296531 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4296557 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4296583 G
1 G
4296584 ATCAGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4299185 original size:26 final size:26
Alignment explanation
Indices: 4299149--4299201 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4299139 GTTGACTTGG
4299149 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
4299175 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
4299201 G
1 G
4299202 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:4299270 original size:883 final size:884
Alignment explanation
Indices: 4297406--4299915 Score: 3676
Period size: 883 Copynumber: 2.8 Consensus size: 884
4297396 GTTGACTTAG
*
4297406 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
4297471 CTCGGGTATGTGCTGGTGCCGTATTTTTCTTCGTCGGAGCATCGCCAGAGAACCTGACCGACGAC
66 CTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGAGCATCGCCGGAGAACCTGACCGACGGC
*
4297536 ATTGGGGTTTCGATGATCGGGGGGCCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
131 ATTAGGGTTTCGATGATCGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * *
4297601 ATTTGGCCCTTACATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
194 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAATTCACACCCCCTTAAAGAG
* * * *
4297666 CATTTGAGATTTTATAGGTTTGCTGCCA-TAAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
259 CATTTGAGATTTTACAGGTTTGTTGCCAGT-AGCCATTAAAGTGTATGAAATGGGGACACTTTTT
*
4297730 TCAAATGGTCACAAAATATTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
323 TCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
*
4297795 AAATACAAGGATCACATCTACCAAGTTTGGGGCTAAAACTCCTTCCAAAAAAATTTTAAAAAAT-
388 AAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
* ** * *
4297859 CTCGAACTACAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTT
453 CT-GAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
*
4297924 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
517 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAGA
* * *
4297989 AATATGTAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCTCGTCTCT
582 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* *
4298054 CTGGCCGGCGCAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAAAGTT
647 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTT
* **
4298119 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTATGGTAGCAGGATCGACAGCACGCAGAGGG
712 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGTAGCAGGATCGACAGCACGCAGAGGG
* * * *
4298184 GGACCCGGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTCGT
777 GGACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCAT
* *
4298249 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
842 TTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAA
* * * * * *
4298292 GCAGACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCCGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
4298357 CTCAGGCATATGCTGGTG-TCGCATTTTTCTTCGTCGGAGCATCGTCGGAGAACCTGACCAATGG
66 CTCAGGCATGTGCTGGTGCT-GCATTTTTCTTCGTCGGAGCATCGCCGGAGAACCTGACCGACGG
* * *
4298421 CATTAGGGTTTCGACGATCGGGGGGCC-GGGGGTGTGCGCACATCATGTGCGATGTGTGCTGGTA
130 CATTAGGGTTTCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * * * * *
4298485 CTTGGCCCTTATATCGGCCCCCCATCCCACATCAAACTTTGAGAATTCACACCCCTTTAAAGAGC
195 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAATTCACACCCCCTTAAAGAGC
*
4298550 ATTTGAGATTTTACAGGTTTGTTGCCAGTGGCCATTAAAGTGTATGAAATGGGGACACTTTTTTC
260 ATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTC
* * *
4298615 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAA
325 AAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
* *
4298680 ATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCT
390 ATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCT
* * *
4298745 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGACTTGCCATGAAACTTCAC
455 GAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
**
4298810 GTGAAGGCTTAAGGGACCATTGTACAAATTTAAAAGCCATAAAAATGGCATTGGCATGCAGAAAT
520 GTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* *
4298875 ATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTG
585 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * * *
4298940 GCCGACGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCACATGGAGTTCAT
650 GCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCAT
** * *
4299005 TCCCTA-TCTAAGATCAGACCAGATGGAGGGTTGCAGTAGCAGGATC-AGTAGCACGCAGAGGGG
715 TCCC-AGTCTAAGATCAGACCAGACCGAGGGTTACAGTAGCAGGATCGA-CAGCACGCAGAGGGG
* * * *
4299068 GACCTGGCCGATCCCCGGCTTGCGTATCCCGCCCTTCTGGCCGGCTGAGCACCCGCACGCTCATT
778 GACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATT
*
4299133 TCGTGGGTTGACTTGGGCATACGGAGTTCACTCCCAGTCTAA
843 TCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAA
* * *
4299175 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
4299240 CTCAGGCATGTGCTGGCGCTACATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGCCGGAGA
66 CTCAGGCATGTGCTGGTGCTGCATTTTTC-T--TC---G-----TCG--G-AGCATCGCCGGAGA
* *
4299305 ACTTGACCGACGGCATTAGGGTTACGATGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTG
117 ACCTGACCGACGGCATTAGGGTTTCGATGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * *
4299370 CGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAG-ATCTGA
180 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAT-TCA
*
4299434 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTT-CCAGTAGCCATTAAAGTGTCTTG-
244 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG-TTGCCAGTAGCCATTAAAGTGT-ATGA
* *
4299497 AATGGGGACACTTTTTTCAAATGGTCACAAAATTTTGTACACTGT-GACTTTTTAGCTGAATTTT
307 AATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACT-TCGAGTTTTTAGCTGAATTTT
* * * * *
4299561 TTTGTGCATGCCAATAAAAATACAATGAGCACATCTACCTAGTTTGGGGCCAAAACTCCTTCCGA
371 TTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
*
4299626 AATAATTTTAAAAAATCC-GAAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
436 AAAAATTTTAAAAAATCCTG-AACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* * *
4299690 GTCTTGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTATGAATTTAGAAGCCATAAAAA
500 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAA
*
4299755 TGGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
565 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
4299820 TTGCGCATCCCGTCTTTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCTCATTTCGTCAGTTGG
630 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGG
* *
4299884 CTTAGGGATACGTAGTTCATTCCCAGTCTAAG
695 CTTAGGCATACGAAGTTCATTCCCAGTCTAAG
4299916 CATACGGAGT
Statistics
Matches: 1448, Mismatches: 147, Indels: 45
0.88 0.09 0.03
Matches are distributed among these distances:
882 1 0.00
883 732 0.51
884 6 0.00
886 138 0.10
889 1 0.00
894 3 0.00
896 1 0.00
897 41 0.03
898 8 0.01
899 50 0.03
900 462 0.32
901 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (884 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGAGCATCGCCGGAGAACCTGACCGACGGC
ATTAGGGTTTCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAATTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
TACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTG
AACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATT
CCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGTAGCAGGATCGACAGCACGCAGAGGGGGAC
CCGGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCG
TGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAA
Found at i:4299927 original size:26 final size:26
Alignment explanation
Indices: 4299891--4299941 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4299881 TGGCTTAGGG
* *
4299891 ATACGTAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAATCTAAGC
4299917 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
4299942 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGC
Found at i:4300240 original size:726 final size:730
Alignment explanation
Indices: 4299120--4300646 Score: 2188
Period size: 726 Copynumber: 2.1 Consensus size: 730
4299110 GGCTGAGCAC
* ** * * * *
4299120 CCGCACGCTCATTTCGTGGGTTGACTTGGGCATACGGAGTTCACTCCCAGTCTAAGCATACGGAG
1 CCGCTCGCTCATTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAG
* ** * * * * * * *
4299185 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAC-GACAGCACATGCTGGGCTCAGGCAT
66 TTCATTCCCAATCTAAGATTGGACCGGAGCAAGGGTTGCTG-CTGCACATGCTTGGCTCAAGCAT
* * * *
4299249 GTGCTGGCGCTACATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGCCGGAGAACTTGACCG
130 GTGCTGGTGC--CGTATTT-TTC-T----------TCGTCGAAGCATCGCCGGAGAACCTGACCG
* *
4299314 ACGGCATTAGGGTTACGATGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
181 ACGGCATTAGGGTTACGACGATCGAGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTG
* * *
4299379 CTGGTACATGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGATCTGACACCCCCTTA
246 CTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
4299444 AAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTTGAATGGGGACACT
311 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTGAATGGGGACACT
*
4299509 TTTTTCAAATGGTCACAAAATTTTGTACACTGTGACTTTTTAGCTGAATTTTTTTGTGCATGCCA
376 TTTTTCAAATGGTCACAAAATCTTGTACACTGTGACTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * ** * * *
4299574 ATAAAAATACAATGAGCACATCTACCTAGTTTGGGGCCAAAACTCCTTCCGAAATAATTTTAAAA
441 AGAAAAATAAAAGGAGCACATCTACCAAGTTTGGCACCAAAAATCCTTCCGAAAAAATTTAAAAA
*
4299639 AATC-CGAAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
506 AATCTCG-AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * **
4299703 ACTTCATGTGAAGGCTTAAAGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCAGG
570 ACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
4299768 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
635 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG-
*
4299833 CTT-TCTGGCCGGCGTAGTGCCCGCCCGC-CG
699 CTTCTCTGGCCAGCGTAGTGCCCGCCCGCTCG
* *
4299863 -C-C-CGCTCATTTCGTCAGTTGGCTTAGGGATACGTAGTTCATTCCCAGTCTAAGCATACGGAG
1 CCGCTCGCTCATTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAG
4299925 TTCATTCCCAATCTAAGATTGGACCGGAGCAAGGGTTGCTGCTGCACATGCTTGGCTCAAGCATG
66 TTCATTCCCAATCTAAGATTGGACCGGAGCAAGGGTTGCTGCTGCACATGCTTGGCTCAAGCATG
* * *
4299990 TGCTGGTGCCGTATTTTTCTTCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTC
131 TGCTGGTGCCGTATTTTTCTTCGTCGAAGCATCGCCGGAGAACCTGACCGACGGCATTAGGGTTA
* * *
4300055 CGACGATCGGGGGGGCCGGGGGTGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
196 CGACGATCGAGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACATGGCCCT
* *
4300120 TATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGGGCATTTGAGAT
261 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
*
4300185 TTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTC-TGAAATGGGGACACTTTTTTCAAATGGTC
326 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTG-AATGGGGACACTTTTTTCAAATGGTC
* * *
4300249 ACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCACGAAAAATAAAAGG
390 ACAAAATCTTGTACACTGTGACTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATAAAAGG
* * * * *
4300314 ATCACGTCTACCAAGTTTGGCACCAAAAATCCTTTCGAAAAAATTTAAAAAAATCTTGAACCGTA
455 AGCACATCTACCAAGTTTGGCACCAAAAATCCTTCCGAAAAAATTTAAAAAAATCTCGAACCGCA
* *
4300379 AAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
520 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* *
4300444 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACATAAATATGAAGAT
585 TTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT
* *
4300509 GTGCCTAAACCCACCTACCGCCCTATCGATCCACGGCTTGCGCATCCCGCTTCTCTGGCTAGCGT
650 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCTTCTCTGGCCAGCGT
4300574 AGTGCCCGCCCGCTCG
715 AGTGCCCGCCCGCTCG
* * *
4300590 CCGGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTTCCAGTCTAAG
1 CC-GCTCGCTCATTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAG
4300647 ATTGGACCAA
Statistics
Matches: 704, Mismatches: 71, Indels: 30
0.87 0.09 0.04
Matches are distributed among these distances:
725 5 0.01
726 522 0.74
727 3 0.00
728 1 0.00
730 1 0.00
731 46 0.07
736 1 0.00
737 3 0.00
738 5 0.01
740 114 0.16
741 2 0.00
742 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (730 bp):
CCGCTCGCTCATTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAG
TTCATTCCCAATCTAAGATTGGACCGGAGCAAGGGTTGCTGCTGCACATGCTTGGCTCAAGCATG
TGCTGGTGCCGTATTTTTCTTCGTCGAAGCATCGCCGGAGAACCTGACCGACGGCATTAGGGTTA
CGACGATCGAGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACATGGCCCT
TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTGAATGGGGACACTTTTTTCAAATGGTCA
CAAAATCTTGTACACTGTGACTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATAAAAGGA
GCACATCTACCAAGTTTGGCACCAAAAATCCTTCCGAAAAAATTTAAAAAAATCTCGAACCGCAA
AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
TAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG
TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCTTCTCTGGCCAGCGTA
GTGCCCGCCCGCTCG
Found at i:4300813 original size:26 final size:26
Alignment explanation
Indices: 4300777--4300829 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4300767 GTTGACTTAG
4300777 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
4300803 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4300829 G
1 G
4300830 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4302586 original size:26 final size:26
Alignment explanation
Indices: 4302556--4302606 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
4302546 TGACTTAGGG
4302556 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
4302582 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
4302607 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:4306305 original size:720 final size:717
Alignment explanation
Indices: 4302805--4307123 Score: 5597
Period size: 717 Copynumber: 6.0 Consensus size: 717
4302795 CCCAGTCTAA
* * * * * *
4302805 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAAGGTTGCGGGAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** *
4302870 CTCGGGCATGTGCTGCTGCCACATTTTTCTTCGTCGGGCCACCAT-TTTCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCGCCGGAG
* ** * *
4302934 AACCTGACCGATGACATTGGGGTTCCGACGATCGGGGCGGTCGGGAGGGTGTGCGCACATGATGT
130 AACCTGACAGGCGGCATTGGGGTTCCGACGATCAGGG-GGTCGGG-GGGTGTGCGCACATGATGT
** * * * *
4302999 GCGATGGGTGCTGGTACTTGGTTCTAATAATGGCCTCCTATCCTTCATCAAACCTCGA-AACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
4303063 CACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTATCCACTAAAGTGTTTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
4303128 TGGGGATACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTTC-AGTTTTTAGCTGAATTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTT
* * * **
4303192 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAATTTGGGGCCAATACTCCTTTTGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
4303257 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTT
452 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * *
4303322 TTGCCATTAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAGTTTACAAACCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
4303387 CATTGGCACGCAGAAATATGTAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
4303452 CGCATCCC-TCCTCTCCGGCCGA--TA-T---AG--TGCCCACCCGCCCGCTCATTTCGTCGGTT
647 CGCATCCCGT-CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
4303508 GGCTTAG
711 GGCTTAG
* * * * *
4303515 GCATACGGAGTTCATTCCCAGTCTAAGATC-GCATCAGACTGAGGGTTGTGGCAGCAGGAT-C-G
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCA-CATGCTG
* * ** ** * *** ** * * * * *
4303577 GTAGCAC--GCA-GAGGGGGACCCG-GTCGATCCCCAG-CTTGCGCATCCCACCCCT----C-TG
64 G--GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GTC-GGGGCA--CCATCGCTGGAGCATC
* * * ** * ** ** * *
4303632 GCCGGCTGAGCGCT--C-GCCCTCTAATTTCGTGGGTT--GAC--TTA-GGCATAC-GAAGTTCA
123 GCCGG-AGAAC-CTGACAGGCGGC--A-TT-G-GGGTTCCGACGATCAGGGGGT-CGGGGGGT-G
* * * * *** **
4303688 TTC-C-CA-G-TTTAAGCATATGGAGTTCAT--T-CCCAGCATTTATATTGGCCCCCTATCCCTC
179 TGCGCACATGATGT--GC-GATGG-GTGC-TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
4303746 ATCAGACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
239 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
4303810 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
304 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * * *
4303875 TTTTTAGCTGAATGTTTTTGAGCATGCCAAAAAAAATACAAGGATCACATCTACCTAGTTTGGGG
369 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * *
4303940 CCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAA-TTTCAAAAATTATGAAA
434 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAA
* *
4304004 AATAGAAAACGAGTCGTCTTTCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTT
499 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * *
4304069 TACAAGCAATAAAAATGGCATTGGCACGTAGAAATATGAATATGTGCCTAAACCCACCTACCACC
564 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* **
4304134 CTATCGATCCA-GTGCTTGCGCATCCCCTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTTCGC
629 CTATCGATCCACG-GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGC
*
4304198 CCGCTCGTTTCTTCGGTTGGCTTAG
693 CCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
4304223 GCATATGGAGTTCAGT-CCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGATGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * * * *
4304287 CTCAGGCATGTGCTGGTACCGTAATTTTCTTTGTC-GAGCACCATTGCCGGAGCACCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCGGAGA
* * *
4304351 ACCTGACTGACGGTATTGGGGTTCCGACGATC-GGGAGGTCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACAGGCGGCATTGGGGTTCCGACGATCAGGG-GGTCGGGGGGTGTGCGCACATGATGTGC
*
4304415 GATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
4304480 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCACTAAAGTGTTTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
4304545 GGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
4304610 GCATGCCAACAAAATTACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * ** *
4304675 TTTTAAAAAATCTCGAACTGTAAAAAGTTTTGAAAATCATGAAAAATTGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
4304740 CCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-CATTAAAAATGGCA
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-TAAAAATGGCA
* * * * * *
4304804 TCGACATGCAAAAATATGAAGAAGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTCGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
4304869 CATCCCGTCTCTCTGGCCCG-CGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGA
649 CATCCCGTCTCTCTGG-CCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
4304933 CTTAG
713 CTTAG
* * *
4304938 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
*
4305003 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCGGAGA
* * *
4305068 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGG-CCGGGGGTGCGCGCACATGATGTGC
131 ACCTGACAGGCGGCATTGGGGTTCCGACGATC-AGGGGGTCGGGGGGTGTGCGCACATGATGTGC
** *
4305132 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCTGCTATCCCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
4305197 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTGGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
4305262 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTG-ATTTCTTTTG
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTTG
* * * * *
4305326 TGCATGTCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAAATCCTTTCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * ** **
4305391 ATTTTGAAAAATCCCGAACCACAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
4305456 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
4305521 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
4305586 CATCCCGTCTCTCTGGCC-AGCGTAGTGCCCGCCGGCCCGCCCGCCC-CTTCATTTCGTCGGTTG
649 CATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCCCGC-TCGTTTCGTCGGTTG
4305649 GCTTAG
712 GCTTAG
* * * *
4305655 GCATATAGAGTTCATTCCCAGTCTAAAATTAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
4305720 CTCGGGCATCTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGCTGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCGGAGA
* * * * *
4305785 ACTTGACAGGCGGCATTAGGGTTCCGATGATCGGGGGGGTCGGGGGGGTGTGCACACATGATGTG
131 ACCTGACAGGCGGCATTGGGGTTCCGACGATC-AGGGGGTC-GGGGGGTGTGCGCACATGATGTG
* * * *
4305850 CGATGGGTGCTGATACTTGGCTCTTATATTGGCCCCCTATCCTTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
4305915 A-CCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTCAAAA
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAA
* *
4305979 TGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTA
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT-
* *
4306044 TGTGCGTGCCAA-AACAAATACAAGTATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
387 TGTGCATGCCAACAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* ** *
4306108 AAAGTTTTAAAAAATCTCGAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
451 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
4306173 CTTGCCATGAAATTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
4306238 GCATTGTCATGCAGAATTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * **
4306303 GCGCATCCTGTCTCTCTGGTCGACGTAGTGCCCGATCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
646 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
*
4306368 GTCTTAG
711 GGCTTAG
* * * *
4306375 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
4306440 CTCGGG-ATGTGCGGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-TCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCATCGCCGGAG
** * *
4306503 AACCTGACCA-GCGGCATTGGGGTTCCGGTGATCAGGGGGCCGAGGGGGGTGTCCGCACATGATG
130 AACCTGA-CAGGCGGCATTGGGGTTCCGACGATCAGGGGGTC--GGGGGGTGTGCGCACATGATG
*
4306567 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
4306632 ACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
4306697 ATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
4306761 TGTGCATGCCAACAAAAATACAAGGATCACTTCTACCATGTTTGGGGCCAAAACTCGTTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
4306826 AAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * *
4306891 TTGCAATGAAACTCCACGTGAAGGCTTAAGAGACCATTGTTTGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
4306956 CATTGGCATGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
4307021 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGCTCGCCCGCTCGTTTCGTCTGTTG
647 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
4307086 GCTTAG
712 GCTTAG
* * * *
4307092 GCATACGGAGTTCATTCCTAGTTTTAGATCAG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAG
4307124 CAGCACGTAG
Statistics
Matches: 3139, Mismatches: 378, Indels: 177
0.85 0.10 0.05
Matches are distributed among these distances:
699 3 0.00
700 173 0.06
701 235 0.07
702 18 0.01
703 8 0.00
704 6 0.00
705 7 0.00
706 15 0.00
707 51 0.02
708 65 0.02
709 26 0.01
710 60 0.02
711 21 0.01
712 12 0.00
713 49 0.02
714 206 0.07
715 221 0.07
716 84 0.03
717 1022 0.33
718 119 0.04
719 318 0.10
720 418 0.13
721 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (717 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCGGAGA
ACCTGACAGGCGGCATTGGGGTTCCGACGATCAGGGGGTCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AG
Found at i:4308158 original size:26 final size:26
Alignment explanation
Indices: 4308122--4308174 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4308112 GTTGACTTAG
4308122 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
4308148 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4308174 G
1 G
4308175 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4309904 original size:26 final size:26
Alignment explanation
Indices: 4309875--4309927 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4309865 ATTGACTTAG
4309875 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4309901 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4309927 G
1 G
4309928 ATTGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4310430 original size:884 final size:886
Alignment explanation
Indices: 4307124--4311258 Score: 4862
Period size: 884 Copynumber: 4.7 Consensus size: 886
4307114 TTTAGATCAG
* * * * * ** * *
4307124 CAGCACGTAGAGGGTGACCCGATCGATCCCCGACTGGTGCATCCCACCCCTCTGGCCGGCTGAAC
1 CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGC
* * * * * *
4307189 GCCCGTACGTTCGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGGATATGG
66 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * * * *
4307254 AGTTCATTCCCAGACCAAGATCAGACCGGACCGAGGGTTGCGGTAGCATATGCTGGGCTCGGGCA
131 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCA
* * ** * * * * *
4307319 TGTGCTGGTACCGTAATTTTCTTCACCGGGGCACCATCACCGGAGAACCTGACTGGTGGTATTCG
196 TGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATC-GAC-GG-AG-A-ACC
* * * * * *
4307384 GGTTCCGAC-G-ATCGTGGGG-GCCGGGGGGGTGTGCGCACAAGATGTGCAATGGGTGCTGGTAC
256 TG-ACCGACGGCAT--TGGGGTTCC---GGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
4307446 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCGAGAACTCACACCCGCTTAAAGAGCA
315 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
4307511 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
380 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
4307576 AATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTT-AGCATGCCAACAAAAA
445 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * *
4307640 TACAATGATCACGTCTACCAAGTCTTGG-GCCAAATCTCCTTTCGAAAAAATTTTAAAAAATCCT
510 TACAAGGATCACGTCTACCAAGT-TTGGAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * *
4307704 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAATCGTCTTGCCATGAAACTTCAC
574 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
*
4307769 GTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAAT
639 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAAT
* *
4307834 ATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCACTCTG
704 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * *
4307899 GCCGACGTAGTGCCCGTCGTCCGCCCGTCCGTCCTCCGTCCGCTCGTTTTGTC-AGTTGGCTTAG
769 GCCGACGTAGTG--C--C-T-CGCCCGCCCG--C-CCGCCCGCTCGTTTCGTCGA-TTGGCTTAG
* * * * *
4307963 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCATATCGAGGGTTGTGGCTGCAGGATCGG
824 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGA
* * * *
4308026 CAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGTATCCTGCCCCTCTGGCCGACTGAGT
1 CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGC
* *
4308091 GCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGG
66 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * *
4308156 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCA
131 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCA
* * * * * * * * *
4308221 TATGTTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGAACCTGACCGACG-GCATTG
196 TGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATC-GACGGA-GAAC-CT-
** * * ** * * *
4308285 GGGTTCGATGATCGA-TGGGG--CCGGGGGGGAGTGCGGACATGATGTGTGATGGGTGCTGCTAC
257 --GACCGACG-GC-ATTGGGGTTCC---GGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * *
4308347 TTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGGGAACTCACACCCCCTTAAAGATCA
315 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*** *
4308412 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGATAACACCTTTTTCA
380 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
4308477 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTCGCTGAATTTTTTTATGCATGCCAACAAAAA
445 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * * **
4308542 TACAAGGACCATGTCTACCAAGTTTGGGGCCAAAACT-TTTTCGAAAAAATTTTAAAAAATCTTG
510 TACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
*
4308606 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTC-T----T---AC--CA--
575 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * *
4308659 TGAAAGCTTAAGGGGCCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCACACAGAAATA
640 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATA
*
4308724 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGG
705 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
** * * * *
4308789 CTAACGTAGTGCC-CGCTCGCCTGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
770 CCGACGTAGTGCCTCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGT
** * * * *
4308853 TCATTCCCAGTCTAAGATTGGATCGGATTGAGGGTTGCGACAGCAGGATCGA
835 TCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * *
4308905 CAACATGCAGAGGGGGACCCGGTTGATCCCCGACTTG-GCATCCTGCCCCTCTGACCGACTGAAC
1 CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGC
* * * * * *
4308969 GTCCACACGCTTGTTTCGTGGGTTGACTTAGGCATACGAAGTTTATTCCTAG--T---C-TA---
66 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * *
4309025 AG---A-T--C-G-----GATCGGA-CTG---G-GGGTTACGGCAGTATATGCTGGGCTC-AGGC
131 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA-GC
* * ** * * *
4309072 ATGTGCTGGTGTCGCATTTTTCTTCGTCAGGGCACCATCGTTGGAGCATCGCCGGAGAACCTGAC
195 ATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGACGGAGAACCTGAC
* * * *
4309137 TGGCGACATTGGGGTTTCGATGATCGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGCTGC
260 ---CGAC-----GG---C-AT--T-GGGGTTC-CGGGCTGTGCGCACATGATGTGCGATGGGTGC
*
4309202 TGGTACTCGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
309 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * *
4309267 AGAGCATTTTAGATTTTACAAGTTTGTTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
374 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
** *
4309332 TTTTCAAATGGTCTTAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAA
439 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
4309397 CAAAAATACAAGGATCACGTCTACCAAGTCTGGGGCCAAAACTCATTCCGAAAAAATTTTAAAAA
504 CAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * *
4309462 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTTGCCTTGCCATGAAAC
569 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
4309527 TTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGAACGCA
634 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
* * *
4309592 AAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTACGCATCCCGTCT
699 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
4309657 CTCTGGCCGATGTAGTGCCT-GCCCGCCCGTCTGCCCGCTCGTTTTGTCGATTGGCTTAGGCATA
764 CTCTGGCCGACGTAGTGCCTCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATA
* *
4309721 CGGGGTTCATTCCCAGTCTAAGATTAGACCAGATCGAGGGTTGCGGCAGCAGGATCGA
829 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGA
* * * * * *
4309779 CAGCGCGCAGGGGGGGACTCGATCGATCCTCGGCTTGTGCATCCTGCCCTTCTGGCCGACTGAGC
1 CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGC
* *
4309844 GCCCGCACGCTAGTTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
66 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* *
4309909 AGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCA
131 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCA
* * * * * *
4309974 TGTGCTGGTGCCATATTTTTCTTCCCCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTAACA
196 TGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGACGGAGAACCTGACC
* * * *
4310039 GACGGCATTGGGGTTCC-GGCTGAGCGCACATGATGTTCGATGGATGCTAGTACTTGGCCCTTAT
261 GACGGCATTGGGGTTCCGGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * * * *
4310103 ATTAGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACTCCCTTAAAAAGCATTTCAGATTTT
326 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
4310168 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
391 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
4310233 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACT-TCAACAAGAATACAAGGATC
456 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA-TGCCAACAAAAATACAAGGATC
* ** * *
4310297 ACGTCTACTAAGTTTGGAGAAAAAAATCCTTCCGAAAAAATTTAAAAAAAATCCCGAACCGTAAA
520 ACGTCTACCAAGTTTGGAGCCAAAACTCCTTCCGAAAAAATTT-TAAAAAATCCCGAACCGTAAA
4310362 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG-TT
584 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
**
4310426 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
649 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
* * * *
4310491 GCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGTGCATCCCGTCTCTCTGGCCGGCATAG
714 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
* * * *
4310556 TG-CTCGCACGCCAGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCA
779 TGCCTCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCA
* * ** * *
4310620 ATCTAAGATCAGACCAGACCGAGGGTTATGGTAGTAGGATCGA
844 GTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGA
* * * * *
4310663 CAGCATGCAGAGGAGGACCCGACCGATCCCCGGCTTGCCCATCCCT-CCCCTCTGGCCGACTGGG
1 CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCAT-CCTGCCCCTCTGGCCGACTGAG
** * *
4310727 TACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACG
65 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* ** * *
4310792 GAGTTCATTCCCAGTCTAAGATCGGATCAGACATAGGGTTGCGGCAGCAAATGCTAGGCTC-AGG
130 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA-G
** * *** * * *
4310856 CATGTGCTGGTGATGCATTTTTCTTCGTTGGGGCACCATCG-CTGGAGCATCGTCGAAGAACTTG
194 CATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTC-GGAGCATCGACGGAGAACCTG
**
4310920 ACCGGTGGCATTGGGGTTCAGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
258 ACCGACGGCATTGGGGTT----C---C----GGG-C------TGTGCGCACATGATGTGCGATGG
* * *
4310985 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCGCATCAAGCCTCGAGAGCTCACACCCCC
305 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
4311050 TTAAAGAGCATTTGAGATTTTACCGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAT
370 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
4311115 GCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGATTTTTCTTTGTGCAT
435 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT-TTTGTGCAT
* * *
4311180 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGTAGCCAAAACTCCTTCTGATAAAATTTT
499 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTCCGAAAAAATTTT
4311245 AAAAAATCCCGAAC
564 AAAAAATCCCGAAC
4311259 TGCATGCAGA
Statistics
Matches: 2777, Mismatches: 355, Indels: 201
0.83 0.11 0.06
Matches are distributed among these distances:
847 1 0.00
850 5 0.00
851 5 0.00
852 66 0.02
853 1 0.00
855 1 0.00
856 2 0.00
857 10 0.00
860 1 0.00
861 248 0.09
862 67 0.02
863 3 0.00
865 1 0.00
866 1 0.00
867 1 0.00
869 2 0.00
870 2 0.00
872 4 0.00
873 1 0.00
874 247 0.09
875 69 0.02
876 1 0.00
877 1 0.00
878 67 0.02
879 108 0.04
880 2 0.00
881 2 0.00
882 7 0.00
883 4 0.00
884 697 0.25
885 84 0.03
886 6 0.00
887 3 0.00
888 2 0.00
889 134 0.05
890 2 0.00
891 4 0.00
893 4 0.00
896 9 0.00
897 3 0.00
898 4 0.00
900 2 0.00
901 362 0.13
902 263 0.09
903 205 0.07
904 62 0.02
905 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (886 bp):
CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCA
TGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGACGGAGAACCTGACC
GACGGCATTGGGGTTCCGGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
CGTCTACCAAGTTTGGAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGC
CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
CCTCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGT
CTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGA
Found at i:4310795 original size:26 final size:26
Alignment explanation
Indices: 4310759--4310811 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4310749 GTTGACTTAG
4310759 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
4310785 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4310811 G
1 G
4310812 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4311390 original size:26 final size:26
Alignment explanation
Indices: 4311354--4311406 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4311344 TTTGACTTAG
4311354 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
4311380 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4311406 G
1 G
4311407 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4313861 original size:25 final size:26
Alignment explanation
Indices: 4313832--4313883 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
4313822 GTTGACTTAG
*
4313832 GCATATGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
4313857 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
4313883 G
1 G
4313884 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTGCCAGTCTAA
Found at i:4314760 original size:25 final size:26
Alignment explanation
Indices: 4314731--4314782 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
4314721 GTTGACTTAG
*
4314731 GCATATGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4314756 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4314782 G
1 G
4314783 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4315668 original size:26 final size:26
Alignment explanation
Indices: 4315632--4315690 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
4315622 GTTGACTTAG
*
4315632 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
4315658 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
4315684 -CAT-CGGA
1 GCATACGGA
4315691 CCGGACCGAG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 4 0.12
25 3 0.09
26 25 0.78
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:4315781 original size:11 final size:11
Alignment explanation
Indices: 4315765--4315797 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
4315755 GTCGGGGTAC
4315765 CATCGTCGGAG
1 CATCGTCGGAG
4315776 CATCGTCGGAG
1 CATCGTCGGAG
4315787 CATCGTCGGAG
1 CATCGTCGGAG
4315798 AACCTGACCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:4315819 original size:898 final size:895
Alignment explanation
Indices: 4312970--4317335 Score: 5775
Period size: 899 Copynumber: 4.9 Consensus size: 895
4312960 GATTAGCCAA
* * * * * *
4312970 ACGGAGTTAATTCCCAGTCTAAGATCAG-CCGGACCAAGGGTTGTGGCAGCACAAGCTGGGCTTG
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * *
4313034 GGCATGTGCTGGTGCCGCATTTTTTTTCGTCGGGGCACCATCGCCGGAG-AAC--C--TG-ACCG
66 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGCACCG
* ** *
4313093 AC-GA-CATCGGGGTTCCAGC-G-ATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
131 ACGGAGCAT--TGG--CCAGCGGCAT-TAGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATG
*
4313154 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTCAAGAACTCACACCCC
191 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
4313218 CTTAAAGAGCATCTAAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
256 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
4313283 CACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAT
321 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAT
*
4313348 GCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTT
386 GCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * ** *
4313413 AAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAGAACGAGTCGTCTTGCCA
451 AAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
4313478 TGAAACTTCACGTGAAGGCTTAAAGGACCACTGTATGAATTTACAAGCCCTAAAAATGGTATTGG
516 TGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCCTAAAAATGGCATTGG
4313543 CAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
581 CAA-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* *
4313608 CCGTCTCTCTGCCTGGCGTAGTGCCCGCCCGCCCGCCTGCCCGTTCGTTTTGTCAGTTGGCTTAG
645 CCGTCTCTCTGCC-GGCGTAGTGCCCG-CCGCCCGCCCGCCCGTTCGTTTCGTCAGTTGGCTTAG
* * * * *
4313673 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACC-GAACCGAGGGTTACGGCAGTAGAATCGAT
708 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCAGAATCGAT
* * * * *
4313737 AGCACGTATAGGGGGACCCGACCGATCCCTGGCTTGTGCATCCCGCCCCTCTGGTCGGCTGAGCG
772 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
4313802 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCAGTCTAAGCAT
837 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCAT
* *
4313861 ACGGAGTTCATTGCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * * * ** *
4313926 AGCATGTACTGGTGCTGTATTTTTCTTCGTCGGGGCACCATCGCCAAAGCATCGTCGGAGAACCT
66 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGCACC-
* ** * * *
4313991 GACATGCG-GCATTGGGGCTCCGACAATTAGGGGGGCC-GGGGGGTGTGTGCACGTGATGTGCGA
130 GAC--G-GAGCATT-GGCCAGCGGC-ATTA-GGGGGCCAGGGGGGTGTGCGCACATGATGTGCGA
*
4314054 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAGACC
189 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
4314119 CCCGTAAAGAGCATTAGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
254 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
4314184 GAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTATGC
319 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
* *
4314249 ATGCCAACAAAAATACAAGGATCATATCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATT
384 ATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* *
4314314 TTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATTATGAAAAATAGAAAATGAGTCGTCTTGC
449 TTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
4314379 CATGAAACTTCACGTGAAGGCTTAAAGGACCACTGTATGAATTTACAAGCCCTAAAAATGGCATT
514 CATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCCTAAAAATGGCATT
4314444 GGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
579 GGCAA-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * ** * *
4314509 ACCCGTCTCTCTGCTCGGCATAGTG--C-CCGCCCGCTTGCCCGTTCATTTCATCAGTTGGCTTA
643 TCCCGTCTCTCTGC-CGGCGTAGTGCCCGCCGCCCGCCCGCCCGTTCGTTTCGTCAGTTGGCTTA
* * * * ** * * *
4314571 GGCATACGGAGTTCATTCCCAGTATAAGATCAGACGAAATCC-AGGGTTATGGTAACAGAATTGA
707 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CCGAGGGTTGCGGCAGCAGAATCGA
* * * * *
4314635 TAGCATGTATAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCTCTCTGGTCGGCTGAGC
771 TAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
*
4314700 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCAGTCTAAGCAT
836 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCAT
**
4314760 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * * *
4314825 GGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCT
66 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGCACC-
* **** * *
4314890 AACAGGCAGCATTGGGGTTCCGACAATTAGGGGGCCGGGGGGGTGTGCGCACATGATGTG-GATG
130 GAC-GG-AGCATT-GGCCAGCGGC-ATTAGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATG
* *
4314954 GGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACTCC
191 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
4315019 CTTAAAGAGCATTTGAGATTTTACATGTTTGCTACCAGTAGCCATTAAAGTGTCCGAAATGGGGA
256 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
4315084 CACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCAT
321 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAT
* * **
4315149 GCCAACAAAAATACAAGGATCACGTCCAATAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
386 GCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * * *
4315214 -AAAAAATCCCGAACCACAAAAAGTTTCGAACATCATGAAAAATAGAAAATGAGTCATCTTGCCA
451 AAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
4315278 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
516 TGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCCTAAAAATGGCATTGG
*
4315343 CACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
581 CA-ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * **
4315408 CCGTCTCTCTAGCCGGCGTAGTGCCCGCCTGCCAGCCCACCCGCTCGTTTCGTTCTTTTGG-TTA
645 CCGTCTCTCT-GCCGGCGTAGTGCCCGCC-GCCCGCCCGCCCGTTCGTTTCG-TCAGTTGGCTTA
* * * * *
4315472 GGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCCGACCGAGGGTTGTGGCAGCAGGATCGAC
707 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGAATCGAT
* ** * *
4315537 AGCATGCAGAGGGGGATGCGATCGATCCCCGGCTTGCGCATCCCGTCCCTCTGGCCGGCTGAGCG
772 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
4315602 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
837 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCAT
* * *
4315662 ACGGAGTTCATTCCCAGCCTAACATCGGACCGGACCGAGGGTTGCGGCTGCACATGCTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * *
4315727 GGCATGTGCTGGTGCCGCA-TTTTCTTTCGTCGGGGTACCATCGTCGGAGCATCGTCGGAGCATC
66 GGCATGTGCTGGTGCCGCATTTTTC-TTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGCACC
* * * *
4315791 GTCGGAGAACCTGACCAGCGGCATTAGGGTTCCGACGATCGGGGGGGCAAGGGGGGTGTGCGCAC
130 GACGGAGCA-TTGGCCAGCGGCATTAGGG----G--G--C-------C-AGGGGGGTGTGCGCAC
* *
4315856 ATGCTGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
178 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * *
4315921 GAACCCAC-CCCCCTTAAAGAGTATTTGAGATGTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
243 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
4315985 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
308 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * * ** *
4316050 TTTTTTTGTGCATGCCAACAAAAATACAAGTATCACGTCTACCATGTTTGGAACCAAAACTCATT
373 TTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT
* *
4316115 CCAAAAAAATTTTAAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
438 CCGAAAAAATTTTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* * * * *
4316180 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA--A---AAT-TATTTACGAGTCATA
503 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCCTA
* ** * *
4316239 AAAATGACATTGGCATGTAGAAATATGAAGATGTGCCCAAACCCACCTCCCACCCTATCGATCCA
568 AAAATGGCATTGGCA-ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * *
4316304 CGGCTTGCGCATCCCGTCTCTCTGGTCGGTGTA--GCAC-CCGCCCGCCCGCCCGTTCTTTTCGT
632 CGGCTTGCGCATCCCGTCTCTCT-GCCGGCGTAGTGCCCGCCGCCCGCCCGCCCGTTCGTTTCGT
* * * * * *
4316366 CGGTTGGCTTAGGCATACAGAGTTGATTACCAGTCTAAGATCGGACCAGATCGAGGGTTGCAGCA
696 CAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
* * * * * * * *
4316431 GTAGGATCGGTAGCACACGGAGGGGGACCCAACCGATCCCTGGCTTGCGCATCCCGCCCCTCTTG
761 GCAGAATCGATAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * * *
4316496 CCGGCTGAGTGCCCACACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTGTA
826 CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTA
4316561 AGCAT
891 AGCAT
* * * ** *
4316566 ATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGATTGCAACAGCACATACTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * ** ** *
4316631 AGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCACCGGAGAACCT
66 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGCACC-
* ** *
4316696 GACCGACGGCATTAGGGTTCCAGC-G-ATCGGGGGGGCCAGGGGGGTGTGCACACATGATGTGCG
130 GACGGA--GCATT--GG--CCAGCGGCAT-TAGGGGGCCAGGGGGGTGTGCGCACATGATGTGCG
*
4316759 ATGGGTGCTGGTACTTGGCCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
188 ATGGGTGCTGGTACTTGGCCC-TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
4316824 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
252 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
4316889 GGGACACTTTTTTCAAATGGCCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTAT
317 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
* *
4316953 GCATGCCAACAAAAATACAATGATCATGTCTACCACGTTTGGGGCCAAAACTCCTTCCGAAAAAA
382 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * ** * *
4317018 TTTT-AAAAAATCCCGAACCGTGAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTT
447 TTTTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
4317082 GCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCCTAAAAATGGCA
512 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCCTAAAAATGGCA
* * * * * *
4317147 TTGGCATGCAAAAATATGAAGATGCGCCTAAACCAACCTATCACCCTATCGATCTACGGCTT-CG
577 TTGGCA-ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** ** * **
4317211 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCTCCCGCCCGTCCAACCACTCGTTTCATTGGTTGGC
641 CATCCCGTCTCTCT-GCCGGCGTAGTGCCC-GCCGCCCGCCCGCCCGTTCGTTTCGTCAGTTGGC
*
4317276 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCA
704 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
4317336 CATGTTGGGC
Statistics
Matches: 3082, Mismatches: 317, Indels: 141
0.87 0.09 0.04
Matches are distributed among these distances:
891 25 0.01
892 73 0.02
893 129 0.04
894 109 0.04
895 119 0.04
897 203 0.07
898 292 0.09
899 450 0.15
900 14 0.00
901 177 0.06
902 272 0.09
903 433 0.14
904 126 0.04
905 185 0.06
906 4 0.00
907 5 0.00
908 3 0.00
909 104 0.03
910 7 0.00
913 2 0.00
914 204 0.07
915 146 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGCACCG
ACGGAGCATTGGCCAGCGGCATTAGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA
CAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
AATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCCTAAAAATGGCATTGGCAACA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGCCGGCGTAGTGCCCGCCGCCCGCCCGCCCGTTCGTTTCGTCAGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGAATCGATAGCACGCAG
AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCAT
Found at i:4316571 original size:25 final size:26
Alignment explanation
Indices: 4316537--4316588 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
4316527 GTTGACTTAG
*
4316537 GCATACGGAGTTCATT-CCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
4316562 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4316588 G
1 G
4316589 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4318157 original size:25 final size:26
Alignment explanation
Indices: 4318129--4318178 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4318119 ATTCACTTAG
*
4318129 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
4318154 GCATACGGAGTTCATCCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
4318179 GGATCGGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:4319065 original size:26 final size:26
Alignment explanation
Indices: 4319029--4319078 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
4319019 GACTTAGGCG
4319029 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
4319055 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
4319079 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:4319962 original size:26 final size:26
Alignment explanation
Indices: 4319925--4319977 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4319915 GTTGACTTAG
4319925 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
4319951 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
4319977 G
1 G
4319978 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:4320854 original size:26 final size:26
Alignment explanation
Indices: 4320824--4320876 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4320814 GTTGACTTAG
*
4320824 GCATATGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
* *
4320850 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
4320876 G
1 G
4320877 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:4321281 original size:898 final size:897
Alignment explanation
Indices: 4317854--4325121 Score: 9268
Period size: 898 Copynumber: 8.2 Consensus size: 897
4317844 ACAAGCCATC
* * * * *
4317854 AAGATGTGCCTAAACCCACCTATCACCCTATCGATCTACGGCTTGCACATCCCGTCGCTTTGGCC
1 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * *
4317919 GGCGTAGTGCCCTCCCGCCCGCCTGCCCACGCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCA
66 GGCGTAGTG----CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * ** ** ** *
4317984 TTCCCAGTCTAAGATTGGATCAGACTGAGGGTTCCGATAGCAAAATCGGTAGCACACAGAGGGGG
127 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGG
* * * *
4318049 ACACGGTCGAT-CTCCGGCTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTT
192 AC-CCGCCGATCCT-CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * *
4318113 TCGTGGATTCACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATCCCCAGTCT
255 TCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * **
4318178 AGGATCGGACCAGACCAAGGGTTACGGCAGCACATGTTGGGCTCAGGCATGTGCTGGTATCACAT
320 AAGATCGGACCAGACCGAGGGTTAGGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACAT
* * * * * *
4318243 TTTTCTTTGTCGGGGCACCATCGTCGGAGCATCATC-GGAGAACCAGACCGACGGCATTGGTGTT
385 TTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-GCAGGAGAACCTGACCGGCGGCATTGGGGTT
4318307 CCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
449 CCGACGATCAGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
4318371 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
513 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
4318436 TTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTC
578 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
4318501 ACAAAATCTTGTACACTTCGAGATTTTAGATGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
643 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * * *
4318566 ATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCCAAAAAATTTTAAAAAATCCTGAACTGGA
708 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCA
* * *
4318631 AAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTACCATGAAACTTCACGTGAAGGC
773 AAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
*
4318696 TTAAGGGACCATTGTATGAATTTACGAGCCATAAAAATGGCATTGGCATGCAGAAATATG
838 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* *
4318756 AAGATGTGCCTAAACCCACGTACCACTCTATCGATCCACGGCTTGCGCATCCCGTCTCTCACTGG
1 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT--CTGG
* *
4318821 TCGGCGTAGT----GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
64 CCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * *** *
4318882 CCTAGTGTAAGATCGGATCGGACCAAGAGGTTTTCGGTAGCAGGATATCCAGCAC-GAGAGGGGG
129 CCCAGTCTAAGATCGGACCGGACCGAG-GGTTGT-GGCAGCAGGATCGGCAGCACACAGAGGGGG
* * * * * *
4318946 ACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGTCGGTTGAGCGTCCACAGGCTTGTTT
192 ACCC-GCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
*
4319011 CGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
256 CGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * *
4319076 AAGATCGGACCGGACCGAGGGTT-GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAACA
320 AAGATCGGACCAGACCGAGGGTTAG-GGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACA
* * * * *
4319140 TTTTTCTTCGTCGGGGCGCCATCGTCAGAGCATCGTC-GGAGAACTTGACCGGCGACATT-GGGT
384 TTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG-CAGGAGAACCTGACCGGCGGCATTGGGGT
** * *
4319203 TCCGGTGATC-GGGGGGCCGGGGGGGGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCC
448 TCCGACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
** *
4319267 TTATATTGGATCCCTAT---TCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
513 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
4319329 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
578 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
4319394 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATTCCAAAAAAAATACAAGG
643 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* *
4319459 ATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCAG-
708 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACC-GC
* * *
4319523 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGCGAAGG
772 AAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*** *
4319588 CTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAAATGGCATTGGCACATAGAAATATA
837 CTTAAGGGACCATTGTATGAATTTACAAGCCA-TAAAAATGGCATTGGCATGCAGAAATATG
** ** ** *
4319650 AAGATGTGCCTAAATGCACCTACCATTCTATCGATCCGTGGCTTGCGCATCCTGTCTCTCTGGCC
1 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * *
4319715 GACGTAGTGCCCGCCCACCCGCCCGGCCGCTCGTTTCTTCGGTTGGCTTAGGGATACGGAGTTCA
66 GGCGTAGTGCCCG----CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* *
4319780 TTCCCCA-TCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGG
127 TT-CCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGG
* * *
4319844 GACCCGACCGATCCACGGCTTGCGCATCCCGCCCCTATGGCCGGCTGAGCGCCCGCACGCTCGAT
191 GACCCG-CCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
*
4319909 TCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTC
255 TCGTGGGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * * *
4319974 TAAGATTGGATCGGACCGAGGGTT-GCGACAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCAG
319 TAAGATCGGACCAGACCGAGGGTTAG-GGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCAC
* ** * *
4320037 ATTTTTCTTCGTCGAGGCACCATCATCGGAGCATCGCTGGAGAACCTGACCGGTGGCATTGGGGT
383 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCAGGAGAACCTGACCGGCGGCATTGGGGT
*
4320102 TCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
448 TCCGACGATCAGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
4320167 CTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
512 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * * * *
4320232 ATTTTACAGGTTTGCTACCAAT-TCTCATTAAAGTGTCTAAAATGGGGACATTTTTTTCAAATGG
577 ATTTTACAGGTTTGCTGCCAGTAGC-CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
4320296 TCACAAAATCTTGTACACTTCGACTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAA
641 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * * ** *
4320361 GGATCACGTCTGCCAGGTTTGGGGCCAAAACGCCGTCTGAAAAAATTTTAAAAAAT-CTCAAACC
706 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCT-GAACC
** * *
4320425 ATAAAAAGTTTCAAAAATCGTGAAAAATAGAAATCGAGTCGTCTTGCCATGAAACTTCACGTGAA
770 GCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
4320490 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
835 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* * *
4320553 AAGGTGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGTGCATCCCGTCTCTCTGGCC
1 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * *
4320618 GGCATAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGTTTATGCATACGGAGTTCATTCC
66 GGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * *
4320683 TAATCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGGCAGCACACGGAGGGGGACCC
131 CAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGACCC
* * * * * *
4320748 AGCCGATCCTCAGCTTGCACATCCTGCCCCTCTGGTCGGCTGAGCGCCCACACGCTCGTTTCATG
196 -GCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * *
4320813 GGTTGACTTAGGCATATGGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGA
260 GGTTGACTTAGGCATA-CGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * *
4320878 TCAGACCAGACCGAGGGTTAGGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTT
324 TCGGACCAGACCGAGGGTTAGGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTT
* * * **
4320943 CTTTG-CTGGGGCACCATCGCCGAAGCATCGCAGGAGAACCTAACCGATGGCATTGGGGTTCCGA
389 CTTCGTC-GGGGCACCATCGCCGGAGCATCGCAGGAGAACCTGACCGGCGGCATTGGGGTTCCGA
*
4321007 CGATC-GGGGGGCCGGGGGGTGTGCGCACACGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
453 CGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * **
4321071 TTGTCCCCCTATCCCTCATCGAATGTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
518 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
4321136 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
583 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
4321201 ATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGAGCATGCCAACAAAAATACAAGGATCAC
648 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * *
4321266 GTCTACCAAGTTTGGGGCCAAAAATCCTTCTAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAG
713 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAG
* * *
4321331 TTTCGAAAATCATGAAAAATAGAAAACGACTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAG
778 TTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
**
4321396 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
843 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
*
4321451 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCC
1 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * *
4321516 GGCATAGTGCCTGCCCGCCCGCTCGCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTTA
66 GGCGTA--G--TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* ** * * * * *
4321581 TTCCCAGTCTAAGATCGGATCGGATAGAGGGTTGCGGCAGCAGGATCGACAGCACAAAGTGAGGG
127 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGG
*** * * * *
4321646 ACCCGGTTAATCC-CTGGCTTGCGCATCCTGCCCCTCCGACCGGCTGAGCGTCCGCACGCTCGTT
192 ACCC-GCCGATCCTC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * * *
4321710 TCATGGGTTGACTTAGGCATACGAGTTCATCCCCAGTCCAAGCATACGGAGTTCATCCCCAGTCT
255 TCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* ** * * *
4321775 AGGATC--A--A-A-C-A---TT--CCCAGTC-CAAGC----AT-ACGGCATGTGCTGGTACCAC
320 AAGATCGGACCAGACCGAGGGTTAGGGCAG-CACATGCTGGGCTCA-GGCATGTGCTGGTGCCAC
* ** * ** * *
4321822 ATTTTTCATAATCGGGGCACCATCGCCGGAGCATCACCA-GAGAACCTGACTAGCGACATTTGGG
383 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-GCAGGAGAACCTGACCGGCGGCATTGGGG
* * * * *
4321886 TT-CTAGCGATCAGAGAGGCCGAGGGGTGTGTGCCCACATGATGTGCGATGGGTACTGGTACTTG
447 TTCCGA-CGATCAGGGGGGCCG-GGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
4321950 GCCCTTGTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTT
509 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * *
4322015 CAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTCTCAAAT
574 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
4322080 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCACGCCAACAAAAAAAC
639 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * ***
4322144 AAGGATCATGTCTA-AAATGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAAT-CTCGA
704 AAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCT-GA
* * * * *
4322207 ACTGCACAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAGGT
767 ACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
*
4322272 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGATGCAGAAATAT
832 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
4322337 G
897 G
* * * * *
4322338 AAGATGTGCCTAAATCC-CCTACCACCCTATTGATCCACGGCTTGCACATCCCATCTCTCTGGCG
1 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * *
4322402 GGAGTAATGCCTGCCCGCCCGCCCGCCGCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGT
66 GGCGT-A-G--TGCCCGCCCG--C-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * ** * ***
4322467 TCATTCCCAGTCGAAGATTGGACCGGATTGAGGGTTGTGGCAGTAGGATCGGCAGCATGTAGAGG
124 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGG
* ** * * * ** * * *
4322532 GGGACCCGACCGATCCCCAACTTGTGCATCCTGTCCCTCTAACCGGCTGAGTGCCTGCACGTTCG
189 GGGACCCG-CCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
*
4322597 -TT--T-GG-TG-----GG--T-TGA---C-TT---AG-----GCATACGGAGTTCATTCCCAGT
253 TTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * *
4322637 CTAAGATCGGACCAGACCGAGGGTT-GTGGCAGCACATGCTGGGCTCTGGCATATGCTGGTACCG
318 CTAAGATCGGACCAGACCGAGGGTTAG-GGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCA
* * *
4322701 CATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGCTGGAGAACCTGACTGGCGGCATTGGGG
382 CATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCAGGAGAACCTGACCGGCGGCATTGGGG
* * * * *
4322766 TTCCAACAATCAGAGGGGCCGGGGGGTGTGTGCCCACATGATGTGCGATGGGTACTGGTACTTGG
447 TTCCGACGATCAGGGGGGCC-GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * * *
4322831 CTCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAGCATTTG
510 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
4322896 AGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
575 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
4322961 GTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACA
640 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* **
4323026 AGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACC
705 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACC
* *
4323091 AGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGA
770 -GCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* *
4323156 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCATGCAAAAATATG
834 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* * * * *
4323220 ATGATGGGCCTAAACCCACCTACCACCC-ATCAATCCACGGCTTGCGCATCCCGTCTCTCTAGCT
1 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * *
4323284 GGCATAGTGCCCGCCCGCCCACCTGCTCGTTTTGCCGGTTGGCTTAGGCATACGGAGTTCATTCC
66 GGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * ** * ** *
4323349 CAATCTAAGATCAGACCGGACAGAGGGTTGTGATAGCAGGATCGACAGCATGCATA--GGGA---
131 CAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGACCC
* **
4323409 ---GA----C--C---CG-AT--CG-----AT--CC--CT-AG-G-ATGCACGCTCGTTTCGTGG
196 GCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* * *
4323447 GTTGACTTAGGCATACAGAGTTCATTCACAGTCTAAGCGTACGAAGTTCATTCCCAGTCTAAGAT
261 GTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * *
4323512 CGGACC-GAACCGAGGGTTAAGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTT
325 CGGACCAG-ACCGAGGGTTAGGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTT
*** *
4323576 CTTTACCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
389 CTTCGTCGGGGCACCATCGCCGGAGCATCGCAGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
* * * * *
4323641 GATCAGGGTGGTCGGGGGGGTGTGTGCACATGATGTGCGAAGGGTGTTGGTACTTGGCCCTTATA
454 GATCAGGG-GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
4323706 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTCA
518 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* **
4323771 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACAGTTTTCAAAAT-GTCACAA
583 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC-AAATGGTCACAA
*
4323835 AATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
647 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* *
4323900 CGTCTACCAAGTTT-GGGCCAAAACTCCTTCCAAAAGAATTTTAAAAAATCCTGAACCCCAAAAA
712 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAA
*
4323964 GTTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTA
777 G-TTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* ***
4324028 AGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCACATAGAAATATG
841 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
*
4324085 AAGATG-GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCC
1 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * *
4324149 GGCGTAGT----GCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCATAAGCATACGGAGTTCATTCC
66 GGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* *** * ** * * *
4324210 CAGTCTAAGATCAGACCGGACCGAGGGTTACAGCAGCAGGATCGACAGCACGTAGACGGTGACTC
131 CAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGACCC
* ** * * *
4324275 GACCGATCCCCGGCTTGCGCATCCCATCCCTCCGACCGGCTGAGCGCCCGCACGCTAGTTTCGTG
196 G-CCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* *
4324340 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGA
260 GGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
** ** * * * **
4324405 TCGGACTGGACCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCAT-TCACTGGTGTCGTATTTT
324 TCGGACCAGACCGAGGGTTAGGGCAGCACATGCTGGGCTCAGGCATGT-GCTGGTGCCACATTTT
* ** * *
4324469 TCTTCGTCAGGGTGCCATC-CTCGGAGCATCGCCA-GAGAATCTGACCGGCGGCATTAGGGTTCC
388 TCTTCGTCGGGGCACCATCGC-CGGAGCATCG-CAGGAGAACCTGACCGGCGGCATTGGGGTTCC
* *
4324532 GACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTA
451 GACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
4324597 TATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
516 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * *
4324662 TACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACA
581 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
4324727 AAATCTTGTGCACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATC
646 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * *
4324792 ACATCTACCATGTTTGGGGCTAAAACACCTTCCAAAAAAATTTTAAAAAAT-CTCGAACCGCAAA
711 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCT-GAACCGCAAA
* *
4324856 AAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
775 AAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *
4324921 AAGGGACCATTGTAAGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATGTG
840 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* * *
4324979 AAGAGGTTCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCC
1 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * ** * * *
4325044 GGCGCAGTGCCTGCCCGCCTGCCCGGTCGCTCATTATATGGGTTGACTTAGGCATACGAAGTTCA
66 GGCGTAGTGCCCGCCCGCCCGCCCGCTCG-T--TT-CGTCGGTTGGCTTAGGCATACGGAGTTCA
4325109 TTCCCAGTCTAAG
127 TTCCCAGTCTAAG
4325122 CATACAGAGT
Statistics
Matches: 5589, Mismatches: 607, Indels: 339
0.86 0.09 0.05
Matches are distributed among these distances:
842 9 0.00
843 3 0.00
844 2 0.00
845 3 0.00
846 2 0.00
847 4 0.00
849 1 0.00
852 2 0.00
854 2 0.00
856 4 0.00
857 1 0.00
859 1 0.00
860 3 0.00
861 94 0.02
862 1 0.00
863 5 0.00
864 49 0.01
865 160 0.03
866 45 0.01
867 233 0.04
868 156 0.03
869 6 0.00
870 3 0.00
871 1 0.00
872 1 0.00
873 5 0.00
874 3 0.00
875 86 0.02
876 11 0.00
877 1 0.00
878 10 0.00
879 5 0.00
880 287 0.05
881 80 0.01
882 172 0.03
883 10 0.00
884 5 0.00
885 73 0.01
886 74 0.01
887 215 0.04
888 197 0.04
889 147 0.03
890 2 0.00
891 4 0.00
892 18 0.00
893 567 0.10
894 421 0.08
895 65 0.01
896 129 0.02
897 101 0.02
898 712 0.13
899 455 0.08
900 159 0.03
901 105 0.02
902 229 0.04
903 129 0.02
904 321 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
GGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGACCC
GCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
GTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
GGACCAGACCGAGGGTTAGGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCT
TCGTCGGGGCACCATCGCCGGAGCATCGCAGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
TCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
TACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTT
CGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
Found at i:4324380 original size:26 final size:26
Alignment explanation
Indices: 4324351--4324403 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4324341 GTTGACTTAG
*
4324351 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
4324377 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
4324403 G
1 G
4324404 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:4325132 original size:26 final size:26
Alignment explanation
Indices: 4325095--4325147 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
4325085 GTTGACTTAG
4325095 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
4325121 GCATAC-AGAGTTCATTCCTAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
4325147 G
1 G
4325148 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:4326002 original size:26 final size:26
Alignment explanation
Indices: 4325973--4326025 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4325963 GTTGACTTAG
*
4325973 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
4325999 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4326025 G
1 G
4326026 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4327788 original size:26 final size:26
Alignment explanation
Indices: 4327752--4327804 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4327742 GTTAACTTAG
4327752 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4327778 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4327804 G
1 G
4327805 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4328669 original size:26 final size:26
Alignment explanation
Indices: 4328632--4328682 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4328622 GTTGACTTAG
4328632 GCATACGAAGTTCAATCCCAGTCTAT
1 GCATACGAAGTTCAATCCCAGTCTAT
* *
4328658 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCAATCCCAGTCTA
4328683 AGATCAGATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAT
Found at i:4329572 original size:26 final size:26
Alignment explanation
Indices: 4329536--4329588 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4329526 GTTGACTTAG
*
4329536 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
4329562 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4329588 G
1 G
4329589 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4330212 original size:904 final size:898
Alignment explanation
Indices: 4325084--4330329 Score: 6490
Period size: 904 Copynumber: 5.9 Consensus size: 898
4325074 TCATTATATG
* *
4325084 GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGA
1 GGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* **** * * *
4325149 TCGGACCGGGTTGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTT
65 TCAGACCGGACCAAGGGATGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
*** * ** * * * * *
4325214 CTTTGCCAGGGCACCATCA-TCGGAGCATCACCGGAGAACCTGACCGACGGGATTGGGGTTTCGG
130 CTTCATCGGGGCACCATCACTCGGAGCATCGTCGAAGAACCTGATCGACGGCATTGGGGTTCCGA
4325278 CGAT--------C---------GTG--CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
195 CGATCGGGGGGGCTGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * *
4325324 ATTGGCCCCTTATCCCTCATCAAACC-CTGAGAACTCAGACCCCCTTAAAGAGCATTTGAGATTT
260 ATTGGCCCCCTATCCCTCATCAAACCTC-AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
4325388 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACA
324 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
4325453 AAATCTTGTACAC-TCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATC
389 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * ** * *
4325516 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAATCGCAAAA
454 ACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTAAACCACAAAA
* * *
4325581 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGGGAAGGCGTA
519 AGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* * *
4325646 AGGGACCATTGGATGAATTTACAAGCCATAAAAATGGCATTTGCATGCAGAAATATGAAGATGTG
584 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTG
* *** *
4325711 CCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGATGGCATAGT
649 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGT
* * *
4325776 GCCCGCCCGCCTGCCCGATCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCATT
714 GCCCGCCCGCCCG-CC---CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
** * ** * * * * * *
4325841 CTAAGATCAGACCGGAGTGAGGGTTACGATAGCAGGATCAGTAGCACGCAGAGAGGGACCC-GTC
775 CTAAGATTGGACCAGACCGAGGGTTGCAATAG-AGGATCGGTAGCACGTAGAGGGGGACCCAGCC
* * * * * *
4325905 GATCCTCGGCTTACGCAT----CCCCTCTGGTCGGTTGAGCGCCTGTACGCTCGTTTCGTG
839 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGTC-GCTGAGCGCCCGCACGCTCGTTTCGTC
* *
4325962 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGA
1 GGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * * * *
4326027 TCGGATCGGACCGAGGGTTGCGGCAGCACATGCTAGCCTCGAGCATGTGCTGGTGCCGTATTTTT
65 TCAGACCGGACCAAGGGATGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * * *
4326092 CTTCGTCGGGGCACCATC-GTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGG
130 CTTCATCGGGGCACCATCACTCGGAGCATCGTCGAAGAACCTGATCGACGGCATTGGGGTTCCGA
* * * * *
4326156 TGACCGGGGGGGCT-GGGGGGTGTGCGCACATGATGTGCGATTGGTGCTAGTACTTGGCCCTTAT
195 CGATCGGGGGGGCTGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
4326220 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
260 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * * *
4326285 ATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAGATGGTCACAA
325 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
*
4326350 AATCTTGTACA-TATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGTATC
390 AATCTTGTACACT-TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* ** ** * ** * * *
4326414 ACGTCTAAGAAGTTTTTTCGGCCAAAACTCCATCCAAAAAAATTTTTAAAAATTCC-GAACCGCA
454 ACATCTACCAAG--TTTGGGGCCAAAACTCCTTCTGAAAAAA-TTTTAAAAAATCCTAAACCACA
* * * *
4326478 GAAAGGTTCGAAAAT-TATGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
516 AAAAGTTTCAAAAATCT-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* **
4326542 CTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGA
580 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGA
*
4326607 CGTGCCTAAACCCACCTACCACCCTATCGAT-CACGGCTTGCGCATCCCGTCTCTCTGGCCGATG
645 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-A-G
* * * * ** * * *
4326671 TCGT-GCCCGCCCACCCACCCGCCCACTCGTTTTGTCAGTTGGCTTAGGCATACAGACTTCATTC
708 -CGTAG--TGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
* * ** * * *
4326735 CCAGTCTAAGATTGGACCAGACTGAGGGTTACGGTAGTAGGATCGGTAGAACGCAGAGGGGGACT
770 CCAGTCTAAGATTGGACCAGACCGAGGGTTGCAATAG-AGGATCGGTAGCACGTAGAGGGGGACC
* * * * *
4326800 C-GATCGATCCCCGACTTGCGCATCCCGTCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCG
834 CAG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTC-GCTGAGCGCCCGCACGCTCGTTTCG
*
4326864 TG
897 TC
4326866 GGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---ATT----G-----GA
1 GGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * *
4326910 TC--A---GACCAAGGGATGCGACAGCACATGGTGGGCTCGAGTATGTGCTGGTGCCAG-ATTTT
65 TCAGACCGGACCAAGGGATGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-GCATTTT
* * * * * *
4326969 TCTTCACCGGGGCACCATC-GTCGGAGCATCGCCGGAGAACCTGACCGACAGCATTGGGGTTCCG
129 TCTTCATCGGGGCACCATCACTCGGAGCATCGTCGAAGAACCTGATCGACGGCATTGGGGTTCCG
** * * *
4327033 GTGA-CTGGAGGGGCTGGGGGGGTGTGCACACATGATGTGTGATTGGTGCTGGTACTTGGCCCTT
194 ACGATC-GGGGGGGCTGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
4327097 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
258 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
*
4327162 TTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
323 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
*
4327227 AAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGA
388 -AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * **
4327292 TCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAATCCTGAACCGTAA
452 TCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTAAACCACAA
** * * *
4327357 AAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCT
517 AAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * * *
4327422 TATGGGACCATTGTAAGGATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
582 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATG
* * * * *
4327487 TGCCTAAACCCACCCACCACCCTATCGATCCACGGCTTCCGCATCTCGTCTCTCTGGTCGGCGTA
647 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTA
** ** * ** *
4327552 GTGCCCTTCCGCCCGCCCGCTCGTTTTGTCGGTTGGCGTAGAAATACGGAGTTCATTCCCAATCT
712 GTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *
4327617 AAGATTGGACCAGACCGAGGGTTGTGGCAACA-A-TATCGGTAGCACGCAGAGGGGGACCCTGTC
777 AAGATTGGACCAGACCGAGGG-T-T-GCAATAGAGGATCGGTAGCACGTAGAGGGGGACCCAGCC
* *
4327680 GATCCCCGGCTTGCACATCCCGCCCCTCTGGTCGGCTGAGCGCCCACACGCTCGTTTCGTC
839 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGTC-GCTGAGCGCCCGCACGCTCGTTTCGTC
*
4327741 GGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * *
4327806 TCAGACCGGACCAAGAGTTATG-G-CAGCACATGCTAGGCTCGGGCATGTGCTGGTTG-GGCATT
65 TCAGACCGGACCAAG-G-GATGCGACAGCACATGCTGGGCTCGGGCATGTGCTGG-TGCCGCATT
* * * * * * *
4327868 TTTCTTCGTCGGGGCACGATCGCT-TGAGCATTGTCGGAGAACCTGATCGACGGCATTGGGGTTT
127 TTTCTTCATCGGGGCACCATCACTCGGAGCATCGTCGAAGAACCTGATCGACGGCATTGGGGTTC
* * * * * * *
4327932 CGGCGATCGGGGGGG-TCGAGGGGTGAGCGCACATGATGTGCAATGGGTGCTAGTACTTGGCCCT
192 CGACGATCGGGGGGGCTGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* * * *
4327996 TACATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGTGCATGTGAGAT
257 TATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
*
4328061 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATAGTCA
322 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * *
4328126 CAAAATCCTGTACACTTCGAGTTTTTAGCTGAATGTCTTTGTGCATGCCAACAAATATACAAGGA
387 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * * *
4328191 ACACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAATTTTAAAAAATCCTGAACCTCAA
452 TCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTAAACCACAA
** *
4328256 AAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGGGAAGGCT
517 AAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
*
4328321 TAAGGGACCATTGTATGAACTT---A--C-----AA--GC-----CATA-A-AAATATGAAGATG
582 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATG
* *
4328367 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGCCCAGCATA
647 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTA
* * * *
4328432 GTGCCCGTCCGCCCGCCCGCTTGTTTCATCGATTGGCTTAGGCATATGGAGTTCATTCCCAGTCT
712 GTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* ** * *
4328497 AAGATTGGACCAGACTGAGGGTTGCGGTAGGAGGATTGGTAGCACGTAGAGGGGGACCCGGCCGA
777 AAGATTGGACCAGACCGAGGGTTGCAATA-GAGGATCGGTAGCACGTAGAGGGGGACCCAGCCGA
* * * * ** * *
4328562 TCCCCGGCTTGTGTAACTCGCCCCTCTGGTCGACTGAGCGCTTGCACGCTCATTTCGTG
841 TCCCCGGCTTGCGCATCCCGCCCCTCTGGTCG-CTGAGCGCCCGCACGCTCGTTTCGTC
* *
4328621 GGTTGACTTAGGCATACGAAGTTCAATCCCAGTCTATGCATACGGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
** * *
4328686 TCAGATTGGACCGAGGGATGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
65 TCAGACCGGACCAAGGGATGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* *
4328751 CTTCATCGGGGCACCATCA-TCGGAGCATCG-CCAGAGAACCTGATCAACGGCATTGGGGTTCCG
130 CTTCATCGGGGCACCATCACTCGGAGCATCGTCGA-AGAACCTGATCGACGGCATTGGGGTTCCG
* *
4328814 ACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
194 ACGATCGGGGGGGCTG-GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* ** * *
4328879 ATATTGGGCCCCTA-CCCTCATCAAACCTTGAGAACTCACACCCTCTTATAGAGCATTTGAGATT
258 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * **
4328943 TTACAGGTTTGCTGCTAGTAGCTATTAAAGTGTCTGAAATGGGGACTTTTTTTTCAAATGGTCAC
323 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
4329008 AAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAATAAAAATACAAGGAT
388 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * *
4329073 CACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAAA-CGCAA
453 CACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCT-AAACCACAA
*
4329137 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
517 AAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* *
4329202 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATC
582 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATG
* * * * * *
4329267 TGCCTAAACCTACCTACCACCTTATCGATCCGCGGCTTGCGCATCCCTTCTCTCTGGCCGGTGTA
647 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTA
* * *
4329332 GTGCCCACCCGCTCACCCGCCAGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCA
712 GTGCCCGCCCG----CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * *
4329397 GTCTAAGATTGGACCAAACCGAGCGTTGCAATAGTAGGATCGGCAGCACGTAGAGGGGGACCCAA
773 GTCTAAGATTGGACCAGACCGAGGGTTGCAATAG-AGGATCGGTAGCACGTAGAGGGGGACCCAG
* * *
4329462 CCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTT
837 CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTC-GCTGAGCGCCCGCACGCTCGTTTCGTC
*
4329525 GGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* *
4329590 TCAGACCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTT
65 TCAGACCGGACCAAGGGATGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
** * * *
4329655 CTTTGTCGGGGCACCATCACT-GGAGCATCGTCGAAGAACCTAATCGGCGGCATTGGGCTTCCGA
130 CTTCATCGGGGCACCATCACTCGGAGCATCGTCGAAGAACCTGATCGACGGCATTGGGGTTCCGA
* *
4329719 CAATCGGGGGGGCTGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTAT
195 CGATCGGGGGGGCTGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
4329784 ATTGGCCCCCTATGCCTCATCAAACCTCAAGAACTCACACCCCCTTGAAGAGCATTTGAGATTTT
260 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * * *
4329849 ACAGGTTTGCTCCCAGTACCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCGAATGGTCACAA
325 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * *
4329914 AATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
390 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* *
4329979 CATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCACAGAAA
455 CATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTAAACCACAAAAA
* * *
4330044 GTTTCAAAAATCTTGAAAAATAAAAAACGAGTCGTTTTGCCATGAAACTTCACGTGAACGCTTAA
520 GTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * * * *
4330109 TGGACCATTGTATTAATTTACAAGCCATAAAAATGGCATTGACACACAGAAATATGAAGATGTAC
585 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGC
* * * * * * * *
4330174 CTAAACCCAGCTACCACCCTACCAATCCACGACTTGCGCATCCTGTCTCTCTAGTCAACGTAGTG
650 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTG
* * *
4330239 CCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCAGACGGAGTTGATTCCCAGTC
715 CCCGCCCGCCCG----CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
*
4330304 TAAGATTAGACCAGACCGAGGGTTGC
776 TAAGATTGGACCAGACCGAGGGTTGC
4330330 GGTAGCACAT
Statistics
Matches: 3820, Mismatches: 418, Indels: 234
0.85 0.09 0.05
Matches are distributed among these distances:
875 182 0.05
876 6 0.00
877 19 0.00
878 477 0.12
879 208 0.05
880 463 0.12
881 305 0.08
882 60 0.02
883 4 0.00
884 3 0.00
886 2 0.00
887 5 0.00
888 1 0.00
889 2 0.00
891 3 0.00
892 3 0.00
893 2 0.00
894 4 0.00
895 2 0.00
896 175 0.05
897 18 0.00
898 48 0.01
899 316 0.08
900 442 0.12
901 113 0.03
902 11 0.00
903 76 0.02
904 865 0.23
905 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (898 bp):
GGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
CAGACCGGACCAAGGGATGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
TTCATCGGGGCACCATCACTCGGAGCATCGTCGAAGAACCTGATCGACGGCATTGGGGTTCCGAC
GATCGGGGGGGCTGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
ATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTAAACCACAAAAAG
TTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCC
TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGC
CCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
TTGGACCAGACCGAGGGTTGCAATAGAGGATCGGTAGCACGTAGAGGGGGACCCAGCCGATCCCC
GGCTTGCGCATCCCGCCCCTCTGGTCGCTGAGCGCCCGCACGCTCGTTTCGTC
Found at i:4332055 original size:26 final size:26
Alignment explanation
Indices: 4332026--4332078 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4332016 TTTGACTTAG
*
4332026 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
4332052 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
4332078 G
1 G
4332079 ATCCGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:4332957 original size:26 final size:26
Alignment explanation
Indices: 4332928--4332979 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
4332918 TTTACTTAGT
4332928 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
4332954 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
4332980 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:4333072 original size:901 final size:890
Alignment explanation
Indices: 4330285--4333689 Score: 4432
Period size: 901 Copynumber: 3.9 Consensus size: 890
4330275 GCTTAGGCAG
* * * *
4330285 ACGGAGTTGATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTTA
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCA
* * * *
4330350 GGCATGTGCTGGTG-CTGCATTTTTCATCTCCAGGGCACTATCGTCGGAGCATCACCGGAGAACC
66 GGCATGTGCTGGTGCCT-CATTTTTCTTCGCCGGGGCAC-ATCATCGGAGCATCACC-GAGAACC
* ** * *
4330414 TGACCGACAGCATT-ATGTTCCGGCGATC-AGGGGGGCCGGGGGGTGTGCGCACATGATTTGTGA
128 TGACCGACGGCATTGGGGTTCCGGCGATCGA-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* * * *
4330477 TTGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACA
192 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
4330542 CCCTTAAGGAGCATTTGATATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTAAAATGGG
257 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
4330607 GACACTTTTATCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGC
322 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGC
* * *
4330672 ATGCAAAAAAAAATAGAAGGATCATGTCTACCAAGTTTGGGG-CAAAATTCCTTCCGAAAAAA-T
387 ATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * *
4330735 TTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCC
452 TTAAAAAATCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATACAAAACGAGTCGTCTTGCC
4330800 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
516 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
4330865 GCATGCAGAAATATGAAGATGTACCTAATCCCACCTACCACCCTATCGATCCACGGCTTGTGCAT
581 GCACGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
4330930 CCCGTCCCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTAGCTTAGGCATACG
646 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
* * * *
4330995 GAGTTCATTCCCAATCTAAGATCAGACCAGATAGAGGGTTGTGGCAGCAGGAT-CGACAGCTCGC
711 GAGTTCATTCCCAGTCTAAGATCAGACCAGAT-GAAGGTTGTGGCAGCAGGATCCGA-A-CACGT
* * * * * *
4331059 AAAGGGGGCCCCGACCGATCCCTGTCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCAT
773 AGAGGGGGACCCGACCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTAC
* * * ** *
4331124 GCTCATTTCGTGGGTTGACTTAGTCTTACCAAGTTCATTCCTAGTCTAAGCAT
838 GCTCGTTTCGTGGGTTTACTTAGTCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * *
4331177 ACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGATTGCAGCAGCACATGCTGGGCTCA
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCA
* *
4331242 AGCATGTGCTGGTGCCGT-ATTTTTCTTCGCCGGGGCAC--CATC---GC-T---GGAGAACCTG
66 GGCATGTGCTGGTGCC-TCATTTTTCTTCGCCGGGGCACATCATCGGAGCATCACCGAGAACCTG
* *
4331297 ACGGACGACATTGGGGTTCCGGCGAT---------CGGGGGGTGTGCGCACATGATGTGCGATGG
130 ACCGACGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* *
4331353 GTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCACTCATCAAACCTCGAGAACTCACACCCCC
195 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
4331418 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGAC
260 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
4331483 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTCA-CTG-ATTGTTTTTGTGCA
325 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTT-AGCTGAATT-TTTTTGTGCA
* * * *
4331546 TGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGTCCAAAAATCCTTCTGAAAAAATTT
388 TGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * * *
4331611 TAAAAAATCCCGAACCGTAAAAAGTTTGAAAAATCATCAAAAATAGAAAACGAATCGTCTTGCCA
453 TAAAAAAT-CTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATACAAAACGAGTCGTCTTGCCA
* * *
4331676 TGAAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCGATAAAAATGGTATTGG
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
4331741 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCACC
582 CACGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
4331806 CCGTCTCTCTGGCCGGCGTAGAGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
647 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C--CCGCTCGTTTCATCGGTTGGCTTAGGCAT
* * ** * * * ** *
4331871 ACGGAATTCATACCCAGTCTAAGATTGGACCGGATTAAGGGTTGTGGCAGCAGGATCGGCAGGAT
708 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATGAA-GGTTGTGGCAGCAGGATCCG-AACAC
*
4331936 GTAGAGGGGGACCCGACCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCTCGT
771 GTAGAGGGGGACCCGACCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGT
*
4332001 ACGCTCGTTTCGT-GGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
836 ACGCTCGTTTCGTGGGTTT-ACTTAGTCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * *
4332056 ACGGAGATCATTCCCAGTCTAAGATCCGACCAGTCCAAGGGTTGTGGCAGCACATGCTGGGCTCA
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCA
* * * * *
4332121 GGCATGTGCCGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCAGAGAACCT
66 GGCATGTGCTGGTGCCTCATTTTTCTTCGCCGGGGCA-CATCATCGGAGCATCACC-GAGAACCT
** * * *
4332186 GATTGACGGCATTGGGGTTCCGGTGATCGAGGGGGCCGGGGGTGGTGTGCACACATGATGTGTGA
129 GACCGACGGCATTGGGGTTCCGGCGATCGAGGGGGCC-GGGG-GGTGTGCGCACATGATGTGCGA
* *
4332251 TGGGTGCTGGTACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAATCCTCGAGAACTCACACC
192 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
4332316 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAATTGGG
257 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
4332381 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGC
322 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGC
* * * *
4332446 ATGCCAACAAAAATACAAGGATCATGTTTACCAAGTATGGGGCTAAAACTCCTTCCGAAAAAATT
387 ATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * * *
4332511 TTAAAAAATCCTGATCCGCAAAAAGTTTCAAAAATCTTGAAAAATACAAAAGGACTCGTCTTGCC
452 TTAAAAAAT-CTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATACAAAACGAGTCGTCTTGCC
* * * *
4332576 GTGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATAAATTTACAAGCGATAAAAATGGCATTG
516 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
4332641 GCACGCAAAAATATCAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
581 GCACGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
4332706 CCCATCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCA
646 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG----CTCGTTTCATCGGTTGGCTTAGGCA
* * * * *
4332771 TACGGAGTTCATTCCCAGTCTATGATCAAACTAGACTGAAGGTTGCGGTAGCAGGATCCGTAACA
707 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-TGAAGGTTGTGGCAGCAGGATCCG-AACA
** ** *
4332836 CGTAGAGGGGGACCCGGTCGAT-CCTCGGCTTGTGCATCCCGCCCCTCTGGCCGGTTGAGCGCCC
770 CGTAGAGGGGGACCCGACCGATCCCT-GGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
4332900 GTACGCTCGTTTCGTGGGTTTACTTAGTCATACGGAGTTCATTCCCAGTCTAAGCAT
834 GTACGCTCGTTTCGTGGGTTTACTTAGTCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * *
4332957 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGTCTGAGGGTTGCGGCAGCATATGCTGGGCTC-
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCA
* * * * *
4333021 GAGCAAGTGCTGGTGCCTCATTTTTCTTCGTCTGGGCACAATCGTCGGAGCATCATCGAAGAACC
66 G-GCATGTGCTGGTGCCTCATTTTTCTTCGCCGGGGCAC-ATCATCGGAGCATCACCG-AGAACC
* * * * * *
4333086 TGATCGATGGCAATGGGG-TCGCGACGATCG-GGGGGTCGGGGGGTGTGCGCACATGATGTGCCA
128 TGACCGACGGCATTGGGGTTC-CGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* *
4333149 TGGGTGCTCGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
192 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
4333214 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
257 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
4333279 GACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTC-AACTTTTTAGCTGAATTTTTTTGTG
322 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAA-TTTTTAGCTGAATTTTTTTGTG
* * *
4333343 CATGCCAAAAAAAATACAAGGATCACAG-CTACCAAGTTTGGGGCCAAAACT-CTTTCTAAAAAA
386 CATGCCAAAAAAAATACAAGGATCA-TGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
4333406 TTTT--AAAA--T----CGT----A-----AAAAAT-A-G--------AAAACGAGTCGTCTTGC
450 TTTTAAAAAATCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATACAAAACGAGTCGTCTTGC
*
4333444 CAATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
515 C-ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
4333509 TGGCACACAAAAATATGAAAATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGC
579 TGGCACGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
4333574 ATCCCGTCTCTCTGGCTGATGTAGTGCCTGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATA
644 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATA
* * * *
4333639 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCA
709 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-TGAAGGTTGTGGCAGCA
4333690 CATGCTGGGC
Statistics
Matches: 2222, Mismatches: 236, Indels: 136
0.86 0.09 0.05
Matches are distributed among these distances:
866 69 0.03
869 16 0.01
870 149 0.07
872 2 0.00
873 240 0.11
874 19 0.01
875 210 0.09
876 1 0.00
877 2 0.00
878 5 0.00
879 267 0.12
880 2 0.00
881 19 0.01
882 14 0.01
884 1 0.00
885 3 0.00
886 3 0.00
888 2 0.00
889 3 0.00
890 31 0.01
892 88 0.04
893 1 0.00
894 1 0.00
895 4 0.00
897 19 0.01
898 247 0.11
899 7 0.00
900 19 0.01
901 767 0.35
902 11 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (890 bp):
ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCA
GGCATGTGCTGGTGCCTCATTTTTCTTCGCCGGGGCACATCATCGGAGCATCACCGAGAACCTGA
CCGACGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGC
CAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
AAAATCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATACAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
CAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCAGATGAAGGTTGTGGCAGCAGGATCCGAACACGTAGAGGGGG
ACCCGACCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTT
CGTGGGTTTACTTAGTCATACGGAGTTCATTCCCAGTCTAAGCAT
Found at i:4334535 original size:26 final size:26
Alignment explanation
Indices: 4334499--4334551 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4334489 GTTGACTTAG
4334499 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4334525 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4334551 G
1 G
4334552 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.