Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 32 of 129
Found at i:4337214 original size:899 final size:901
Alignment explanation
Indices: 4335252--4338456 Score: 4745
Period size: 899 Copynumber: 3.6 Consensus size: 901
4335242 ACCGAGGGTT
* * ** * * * *
4335252 GATCCCCGGCTTACGCATCTCGCCCCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTAGTTT
1 GATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * *
4335317 CACTTAGGCACACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTACGATCGA
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGA
* * *
4335382 ACCAGA-TCGAGGGTTGT-GGTAGCACATGCTAGGCTTGGGCATGTGCTGGTGCTGCATTTTTCT
131 ACCAGACT-GAGGGTT-TCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * * *
4335445 TCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCAGCGGCATTGGGGTTCTGGCGA
194 TCGTCGGGGCACCATCGTCAGAGCATCATCGGAGAACCTAACCGGCGGCATTGGGGTTCCGACGA
* * *
4335510 TCGGGGGGCCCGGGGGGGTGTGCGTACATGATGTGCAATGGGTGGTGGTACTTGGCCCTTATATT
259 TCGGGGGG-CC-GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGCACTTGGCCCTTATATT
* *
4335575 AGCCCCCTATCCCTCATCAAACATCGAGAACTCACACCCCCTTAAA-AGCATTTGAGATTTTACA
322 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * * ** *
4335639 -GTTTGCAGCCAGTTGCAATTAAAGTGTCTAAAATGTTGACGCTTTTTTCAAATGGTCACAAAAT
387 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
4335703 GTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACACGGATCATGT
452 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCATGT
* * *
4335768 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTT
517 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAAACGCAAAAAGTT
* * *
4335833 TCAAAAATCTTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
582 TCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * * *
4335898 ACCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCATGCGGAAATATGAAGATGTGCCTA
647 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAACAAGAAGATGTGCCTA
* * * * * * * *
4335963 AACCCACCTGCCAACCTATCGATCGACGGCTTGGGCATCCTGTCTCTCTGGCCGACGTATTGTCC
712 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG-CTCTCTGTCCGACGTAGTGCCC
* * * * *
4336028 GCCCATCCGCCCTCCCGCTT-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTA
776 GCCCGTCTGACCGCCCG-TTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * * * * * * * *
4336092 AGATCGGATCATATCGAGGGTTTTGGTAGCAAGATAGACAGCACGTAGAGGGGGACCC-GACC
840 TGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAAAGGGGGACCCAG-TC
* * * *
4336154 GATCCCCGACTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCTCACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * *
4336219 GACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCGG
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGA
** * * *
4336284 ACTGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCCCATTTTTCTTC
131 ACCAGACTGAGGGTTTCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * * *
4336349 GTCGGGGCACCATCGCCAGAGCATCATCGGAGAACCTAACTGGTGGCTTTGCGGTTCCGACGATT
196 GTCGGGGCACCATCGTCAGAGCATCATCGGAGAACCTAACCGGCGGCATTGGGGTTCCGACGATC
* * * *
4336414 GGGGGGGCGGGGGGTGTGCCCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCT
261 GGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGCACTTGGCCCTTATATTGGCC
*
4336479 CCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTT
326 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * *
4336544 TGCTGCCAGTAGCCTTTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
391 TGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
4336609 TACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATAAAAGGATCATGTCTAC
456 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCATGTCTAC
*** * * *
4336674 CAAGTTTGTTACC-AAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAAACACAAAAAGTTTCAA
521 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAAACGCAAAAAGTTTCAA
* * * * *
4336738 AAATCATGAAAAATAAAAAACGAGTCATCCTACCAAGAAACTTCACGTGAAGGCTTAAGCGACCA
586 AAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
4336803 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAACAAGAAGATGTGCCTAAACC
651 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAACAAGAAGATGTGCCTAAACC
4336868 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG-TCTCTGTCCGACGTAGTGCCCGCCCG
716 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCTCTCTGTCCGACGTAGTGCCCGCCCG
4336932 TCTGACCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATTG
781 TCTGACCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATTG
4336997 GACCAGACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAAAGGGGGACCCAGTC
846 GACCAGACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAAAGGGGGACCCAGTC
* * *
4337053 GATCCCTGGCTTGCGCATCCCGCCCTTCTAGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* **
4337118 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGAAAGATCGA
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGA
* * *
4337183 ACCAGACTGAGGCTTTCGGTAGCACATGCTGGGCTCGGGCATGTCCTGGTGCCACATTTTTCTTC
131 ACCAGACTGAGGGTTTCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * *
4337248 CTCGGGGCACCATCGTCGGAGCATC-GCTGGAGAACCTAACCGGCAGCATTGGGGTTTCGACGAT
196 GTCGGGGCACCATCGTCAGAGCATCATC-GGAGAACCTAACCGGCGGCATTGGGGTTCCGACGAT
* *
4337312 CGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
260 CGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGCACTTGGCCCTTATATTGGC
*
4337377 CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
325 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
4337442 TTGCTGCCAGTAGCCATTAAAGCGTCTAAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTT
390 TTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* **
4337506 GTACACTTCGAGTTTTTAGCT-AATTTTTTTATGCATGCCAATGAAAATACAAA-GATCATGTCT
455 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA-AAAGGATCATGTCT
* * * *
4337569 ACCAAGTTTGGGGCCTAAACTCCTTCTGAAAAATTTTTAAAAAATCTCGAATCGCAAAAAGTTTT
519 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAAACGCAAAAAG-TTT
*
4337634 C-AAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGG
583 CAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
4337698 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAACAAGAAGATGTGCCTAA
648 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAACAAGAAGATGTGCCTAA
4337763 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGTCCGACGTAGTGCCCG
713 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG-CTCTCTGTCCGACGTAGTGCCCG
4337828 CCCGTCTGACCGCCCGTTCGTTTCGTCGGTTGG-TTGAGGCATACGGAGTTCATTCCCAGTCTAT
777 CCCGTCTGACCGCCCGTTCGTTTCGTCGGTTGGCTT-AGGCATACGGAGTTCATTCCCAGTCTAT
*
4337892 GATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAAAAGGGGACCCAGTC
841 GATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAAAGGGGGACCCAGTC
* * *
4337953 GATCCCTGGCTTGCGCATCCCGCCCTTCTAGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * *
4338018 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTATGATTGG
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGA
* *
4338083 ACC-GAATCTGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCT
131 ACCAG-A-CTGAGGGTTTCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * *
4338147 TCGTCGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGACCGACGGCATCGGGGTTCCGACGA
194 TCGTCGGGGCACCATCGTCAGAGCATCATCGGAGAACCTAACCGGCGGCATTGGGGTTCCGACGA
*
4338212 TCGGGGGTCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCT--CATTCTTGGCCCTTATATT
259 TCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGCA--CTTGGCCCTTATATT
*
4338275 GG-CCCCTATGCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
322 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
4338339 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
387 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
4338404 CTTGCACACTTCAAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATA
452 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
4338457 TGAAGATGTG
Statistics
Matches: 2081, Mismatches: 202, Indels: 40
0.90 0.09 0.02
Matches are distributed among these distances:
897 47 0.02
898 260 0.12
899 507 0.24
900 453 0.22
901 432 0.21
902 382 0.18
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
GATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGA
ACCAGACTGAGGGTTTCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
GTCGGGGCACCATCGTCAGAGCATCATCGGAGAACCTAACCGGCGGCATTGGGGTTCCGACGATC
GGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGCACTTGGCCCTTATATTGGCC
CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
TGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCATGTCTAC
CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAAACGCAAAAAGTTTCAA
AAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAACAAGAAGATGTGCCTAAACC
CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCTCTCTGTCCGACGTAGTGCCCGCCCG
TCTGACCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATTG
GACCAGACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAAAGGGGGACCCAGTC
Found at i:4338061 original size:26 final size:26
Alignment explanation
Indices: 4338025--4338075 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
4338015 GTTGACTTAG
4338025 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
4338051 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
4338076 TGATTGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4339669 original size:26 final size:26
Alignment explanation
Indices: 4339633--4339685 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4339623 GTTGACTTAG
4339633 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
4339659 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4339685 G
1 G
4339686 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4343182 original size:26 final size:26
Alignment explanation
Indices: 4343146--4343196 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
4343136 ATTGACTTTG
* * * *
4343146 GCATACGGAGTTCTTTCCCTGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
4343172 GCATACAGAGTCCATTCCCAGTCTA
1 GCATACAGAGTCCATTCCCAGTCTA
4343197 TGATCGGATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAGTCTAA
Found at i:4344919 original size:26 final size:26
Alignment explanation
Indices: 4344889--4344941 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4344879 GTTGACTTAG
4344889 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4344915 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4344941 G
1 G
4344942 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4347531 original size:26 final size:26
Alignment explanation
Indices: 4347501--4347550 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
4347491 TTGACTTAGG
*
4347501 CATACGGAGTTCATTCCCAATCTAAC
1 CATACGGAGTTAATTCCCAATCTAAC
*
4347527 CATACGGAGTTAATTCCCAGTCTA
1 CATACGGAGTTAATTCCCAATCTA
4347551 TGATTGGACC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (26 bp):
CATACGGAGTTAATTCCCAATCTAAC
Found at i:4347545 original size:886 final size:876
Alignment explanation
Indices: 4340510--4348142 Score: 8634
Period size: 886 Copynumber: 8.7 Consensus size: 876
4340500 TTGACTTAGG
* * * *
4340510 CATACGGAGTTCATTCCCAATCTAAGATCGAACCGGACCGAGGGTTCCAGCAGCACATGTTGGGC
1 CATAC-GAGTT-ATTCCCAATCT-AGAT-G-A-CTGACC-AGGGTTGCGGCAGCACATGCTGGGC
* * * ** * * * *
4340575 CCGGGCATGTCCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATC-GTCGGAGCATCGCCAGAGA
59 TCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCACT-GGAGCATCGTCGGAGA
* * **
4340639 ACTTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTTGGGGGGGTGTGCGCACATGATGTG
123 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-CCGGGGGGTGTGCGCACATGATGTG
* * *
4340704 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCAC
187 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
4340769 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
252 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
4340833 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
317 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
4340898 TGCATGCCAAAAAAAATACAAGGATCACGTGTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
382 TGCATGCCAACAAAAATACAAGGATCACATCTACCAGGTTTGGGGCCAAAAATCCTTCC-AAAAA
*** *
4340963 AGTTTT-AAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
446 A-TTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
4341027 TGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCGTAAAAATGCC
510 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
4341092 ATTGGCATGTAA-AAATATGAAGTTGTGCCTAAACCCACCCACCACCCTATCGATCCACGGCTTG
575 ATTGGCACG-AAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
* * *
4341156 CGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGTCCGCCCGCCCGCTCGTTTCATCGGTTGGCTT
639 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTT
** * **
4341221 AGGCATACGGAGTTCATTCCCAGTCTAAGATTTGACCAGATTGAGGGTTGCGGCAGCAGGATCGC
703 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGA-ACCGAGGGTTGCGGCAGCAGGATCGC
* * *
4341286 AGCATGCTGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAACG
767 AGCACGC--AGAGGG----G---GA--CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * *
4341351 CCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATATGCAGTTCATTCCCAATCTAA
821 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAA
* *
4341407 GCATACGAAGTTCATTCCCAATCTAAGATTGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 -CATACG-AGTT-ATTCCCAATCT-AGA-T-GA-CTGACC-AGGGTTGCGGCAGCACATGCTGGG
* * * * *
4341472 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCG-GG-----GCAC-----CATCGTCGGAGA
58 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCACTGGAGCATCGTCGGAGA
* * *
4341526 ACCTGATCGGCGGCATTGGGGTTCCGACGATCGGAGGGGCC-GGGGGTGTGCGCACATGATGTGC
123 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
4341590 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
188 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
** * *
4341655 CCCCCTTAAAGAGCATTTGAGATTTTACAGGCATGCTGCCAGTAGCTACTAAAGTGTCTGAAATG
253 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
4341720 GGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
318 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
4341785 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCGAAAAAT
383 GCATGCCAACAAAAATACAAGGATCACATCTACCAGGTTTGGGGCCAAAAATCCTTCCAAAAAAT
* * * *
4341850 TTTAAAAAATCTTGAACC-TAAAATGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGC
448 TTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
4341914 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTGACAAGCCATAAAAATGGCATT
513 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * *
4341979 GGCATGCAGAAATATGAAGATGTGCCGAAACCCACCTACCACCCTATCCATCCACGGCTTGCGCA
578 GGCACGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCA
* * * * *
4342044 TCCCGCCTC-CTTGGCCGACGTAGTGCCCGTCCG--C-CCGCTCATTTCGACGGTTGGCTTAGGC
643 TCCCGTCTCTC-TGGCCGGCGTAGTGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * ** * * ** ** *
4342105 AAACGGAGTTCATTCCCAGTCTACGATTGGACCAGACCGAGGTTTATGGCAATAGGATTGGCAGC
707 ATACGGAGTTCATTCCCAGTCTAAGATCAGACGA-ACCGAGGGTTGCGGCAGCAGGA-TCGCAGC
* * * * *
4342170 ACACAGAGGGGGACCTGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCTGGCTAAACGCCC
770 ACGCAGA---GG----GG--GA--CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * * *
4342235 GTACGGTCCTTTCGTGGGTTGACTTAGGCATAC-AGAGTTCATTCCCAGTCTAA
824 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGA-AGTTCATTCCCAATCTAA
* * * * *
4342288 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGGAGGGTTGTGGCAGCACA---T--G
1 -CATA-CGAGTT-ATTCCCAATCT-AGAT--GA-CTGAC-CAGGGTTGCGGCAGCACATGCTGGG
* * * * *
4342348 CT-AGGC---T-C-GG-G---CATTTTTCTTTGTCGGGGCACCATC-GTCGGAGCATCGCCAGAG
58 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCACT-GGAGCATCGTCGGAG
* * *
4342402 AACTTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCCGTGGGGGTGTGCACACATG-TGT
122 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGT
* *
4342466 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCA
186 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
*
4342531 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAA
251 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
4342596 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCAAGTTTTTAGCTGAATTTTTTT
316 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * ** *
4342661 GTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGCACCAAAACTCCTTCCAAAAA
381 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAGGTTTGGGGCCAAAAATCCTTCC-AAAA
* * * *
4342726 AATTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATACAAAACGAGTCGTCT
445 AATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
4342791 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTAGAAAAATGGC
510 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
4342856 ATTGGCATGGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
575 ATTGGCACGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
* * * * *
4342921 GCATCCCGTCTCTCTGGCCGACATAGTTCCCGTCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTA
640 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-GCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * ** *
4342986 GGCATACAGAGTTCTTTCCCAGTCTAAGATCGGACTAGACTGAGGGTTGCACCAGCAGGATCTAC
704 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGA-ACCGAGGGTTGCGGCAGCAGGATC-GC
* * ** *
4343051 AGCACACAGAGGGGGACCCGGTCAATCCCCGGCTTACGCATCCTACCCCTCTGGCCGACTGAGCG
767 AGCACGCAGA--GGG----GG---A--CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * * * * **
4343116 CCCGCACTCTCGCTTT-GTGGATTGACTTTGGCATACGGAGTTCTTTCCCTGTCTAA
821 CCCGCACGCTCG-TTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAA
* * * * * *
4343172 GCATACAGAGTCCATTCCCAGTCTATGATCGGA-TCGAACTGAGGGTTACGACAGCATATGCTGG
1 -CATAC-GAGT-TATTCCCAATCTA-GAT--GACT-G-AC-CAGGGTTGCGGCAGCACATGCTGG
* * * * * * *
4343236 GCTCGGGCATGTGCTGGTGCCATATTTTTTTTCGTTGGGGCTCCATCACCGGAGCATCGTC-GAG
57 GCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCACTGGAGCATCGTCGGAG
* * * *
4343300 AACCTGACTGGCGGCATTGGGATTCTGACGATCGGGGGGGCCGAGTGGGGTGTGCGCACATGATG
122 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-G-GGGGTGTGCGCACATGATG
* * *
4343365 TGGGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
185 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* *
4343430 ACACCCCCTTACAGAGCATTTGAGATTTTACGGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AG
250 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-
* *
4343494 AATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTT
314 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
4343559 TTGTGCATGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAA
379 TTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAGGTTTGGGGCCAAAAATCCTTCCAAA
** * * *
4343623 AAATTTTAAAAAATCTCAAACCGTAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTC
444 AAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
4343688 TTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGG
509 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
4343753 CATTGGCACGCAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATTGATCCACGGCTTA
574 CATTGGCACGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
* * * *
4343818 CGCATCCCGTCTCTCTTGTCGACGTAGTGCCCGCCCGCCTGTCCGCCCGCTCGTTTCCTCGGTTG
639 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-C---CCG-CCGCTCGTTTCGTCGGTTG
* * * *
4343883 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGGCAGTAGGA
699 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGA-ACCGAGGGTTGCGGCAGCAGGA
** *
4343948 TCGGTTGCACGCAAGAGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCGGCTG
763 TC-GCAGCACGC-AGAGGG----G---GA--CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
*
4344013 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
817 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAA
* * * * * *
4344073 GCATATGAAGTTTATTCCCAGTC--GAAGATCAGACCGAGGGTTACGGCAGCACATGCTGGGCTT
1 -CATACG-AG-TTATTCCCAATCTAGATGA-CTGACC-AGGGTTGCGGCAGCACATGCTGGGCTC
* ** * * * * *
4344136 GGGCATGTGCTGGTGCCGTATTTTTATTCGTCGGGGCACCATC-GTCGGAGCATCGCCTGAGAAC
61 AGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCACT-GGAGCATCGTCGGAGAAC
**
4344200 CTGACCGACGGCATTGGGGCACCGACGACATTCGGGTTTCGGCGATCGGGGGGCCGGGGGGGTGT
125 CTGACCGACGGCATTGGGGTTCCGACG--A--------T---CG---GGGGGGCC-GGGGGGTGT
*
4344265 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAA
173 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
4344330 CCTCTAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
238 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
4344395 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTA
303 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
*
4344460 GCTGAATTGTTTTGTGCATGCCAAC-AAAA-AC-----TC-C-T-T--C-----T---G------
368 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAGGTTTGGGGCCAAAA
** * * *
4344499 --------AAAAAATTTTAAAAAATCACGAACCGTAAAAAGGTTCAAAAATCATGAAAAATAGAA
433 ATCCTTCCAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAA
4344556 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
498 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
4344621 CATAAAAATGACATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
563 CATAAAAATGGCATTGGCACGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * ** *
4344686 TCCACGGCTTGCGCATCCCGTCTCTCTGCCCGACGTAGTGCCCGCTTG--C-CCGCTCATTTCGT
628 TCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCTCGTTTCGT
* *
4344748 CAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCA
693 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGA-ACCGAGGGTTGCGGCA
* * * * *
4344813 GCAAGATCAGTAGCACGCAGAGGGGGACCCGAC---CG-AT-----CCC-C--G--GACTTA---
757 GCAGGATC-GCAGCACGCAGAGGGGGACCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* *
4344861 --CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
821 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAA
* *
4344915 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGCACATGTTGGG
1 -CATAC-GAGTT-ATTCCCAATCT-AGAT--GACT-GACC-AGGGTTGCGGCAGCACATGCTGGG
* * * *
4344980 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCG-GG-----GCACT-----ATCGTCGGAG-
58 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCACTGGAGCATCGTCGGAGA
* ** * *
4345033 --C--ACCG-C--C---GGAGAACCTGAC---CGGGGGGGCCGGGGGGTGTGCACACATGATGTA
123 ACCTGACCGACGGCATTGGGGTTCC-GACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
4345085 CGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
187 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
*
4345150 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAAT
252 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
4345214 GGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTG
317 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * **
4345279 TGCATGCCAA-AAACAATACAAGTATCACATCTACTAAGTTTGGGGCCAAAAATCCTTTTGAAAA
382 TGCATGCCAACAAA-AATACAAGGATCACATCTACCAGGTTTGGGGCCAAAAATCC-TTCCAAAA
* *** ** ** * *
4345343 AATTTTCAAAAATCCCAAAAAGTGAAAAG-TTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
445 AATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
4345407 TGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
510 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
4345472 ATTGGCACAAAGAAATATGAAGATGTGCCTAAACCCACCTATCACTCTATCGATTCATGGCTTGC
575 ATTGGCACGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
** * *
4345537 GCATCCCGTCTCTCTGGCCGGTATAGTGCCCGCCTGCCCGTCCGCTCGTTTCGTCGATTGGCTTA
640 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTA
* * * * *
4345602 GGCATATGGAGTACATTCCCAGTCTAAGATCAGATTGGACCGAGGGTTGCAGCAGCAGGATCGGC
704 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGAACCGAGGGTTGCGGCAGCAGGATC-GC
* * *
4345667 AACACGCAGAGGGGGACCCGACCGATCCTCGACTTGAGCATCCCGCCCCTCTGGCCGGCTGAGCA
767 AGCACGCAGAGGGGGA--C--CCG------G-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
4345732 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAA
821 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAA
* *
4345788 GAT-CG-G---------ATC--G--GACTG---AGGGTTGCGGCAGCACATACTGGGCTCAGGCA
1 CATACGAGTTATTCCCAATCTAGATGACTGACCAGGGTTGCGGCAGCACATGCTGGGCTCAGGCA
* * * * * * * *
4345835 TGTGCTGATGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCAGACAACCTGACC
66 TGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCACTGGAGCATCGTCGGAGAACCTGACC
** * *
4345900 GACGGCATTGGGGTTCCG--G-T------GATCGGGGGGTGTGCGCACTTGATGTGCTATGGGTG
131 GACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* **
4345956 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTGGAGAACTCACACCCCCTTA
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
* *
4346021 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACATT
261 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
4346086 TTTTTCAAATGGTCCCAAAATCTTGTACACTTCAAGTTTTTAGCTGTATTTTTTTGTGCATGCCA
326 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* ** * *
4346151 AAAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
391 ACAAAAATACAAGGATCACATCTACCAGGTTTGGGGCCAAAAATCCTTCC-AAAAAATTTTAAAA
* * **
4346216 AATCTTGAACCGTAAAAAGTTT-GAAAATCGTGAAAAATAGAAAACGAGTAATCTTGCCATGAAA
455 AATCTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * *
4346280 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTGCAAGCCATAAAAATGGCATTGGCATGC
520 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGA
*
4346345 AGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTC
585 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTC
*
4346410 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
650 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * *
4346475 GTTCATTCCCAGTCTAAGATTAGACTAGACCGAGGGTTGTGACAGTAGGATCGACAGCACACAAA
714 GTTCATTCCCAGTCTAAGATCAGACGA-ACCGAGGGTTGCGGCAGCAGGATCG-CAGCACGCAGA
* * * *
4346540 GGGGGACCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGTCCGCACGCTCGTTTCGTGGG
777 GGGGGACCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
* *
4346605 TTGACTTAGGCATACGAAATTCATTCCCAGTCTAA
842 TTGACTTAGGCATACGAAGTTCATTCCCAATCTAA
* * *
4346640 GCGTACAGAGTTCATTCCCAATCTAAGATCAGACTGGACCAACGGTTG-TGCAGCACATGCTGGG
1 -CATAC-GAGTT-ATTCCCAATCT-AGAT--GACT-GACC-AGGGTTGCGGCAGCACATGCTGGG
* *
4346704 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCACTGGAGCATCGCCGGAGA
58 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCACTGGAGCATCGTCGGAGA
4346769 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATGT
123 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGT
*
4346834 GCGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTTC-AGAACTC
186 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCAAGAACTC
* * *
4346898 AGACCCCCTTAAAGAGCATTTGAGATTTTACACGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAA
250 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
4346963 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
315 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * **
4347028 TGTGCATGCCAACAAAAATACATGGATCACGTCTACCAGGTTT-GGGCCAAAACGCCTTCCAAAA
380 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAGGTTTGGGGCCAAAAATCCTTCCAAAA
* * *
4347092 AATTTTAAAAAATCTTGAACTGCAAAGAGTTTCAAAAATCGTGAAAAATAGAGAACGAGTCGTCT
445 AATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
4347157 TGCCATGAAACTTCACGTGAAGGGTTAAGGG-CTATTGTATGAATTTACAAGCCATAAAAATGGC
510 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
4347221 ATTGGCACGTAGGAATATGAGGATGGGCCTAAACCCACCTACCACCCTAACGATCCATGGCTTGC
575 ATTGGCACGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
* * * *
4347286 GCATCTCGTCTCTCTGGCCGGCGTATTGCCCGCCCGCCCGCCTGTTCGTTTCGTCGGTTGGCATA
640 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC-GCTCGTTTCGTCGGTTGGCTTA
* * * * *
4347351 GGCGTACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTACGGTAGCAGGATCAGC
704 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGAACCGAGGGTTGCGGCAGCAGGATC-GC
* * * * * *
4347416 AGCACGTAGAGGGGGACCCGGCTTGCGCATCTCGCCCCTCTAGCTGGCTAAGCGCCCGCATGCTC
767 AGCACGCAGAGGGGGACCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
*
4347481 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
832 GTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAA
* *
4347526 CCATACGGAGTTAATTCCCAGTCTATGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 -CATAC-GAGTT-ATTCCCAATCTA-GA-T-GA-CTGACC-AGGGTTGCGGCAGCACATGCTGGG
*
4347591 CTCAGACATGTGCTGGTG-CAGCATTTTTCTTCGTC-AGGGCACCATCA-TCGGAGCATCGTCGG
58 CTCAGGCATGTGCTGGTGCCA-CATTTTTCTTCGTCGA-GGCACCATCACT-GGAGCATCGTCGG
4347653 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
120 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
*
4347718 TGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
185 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * *
4347783 ACACCCCCTTAAAAAGCAGTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AA
250 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
4347847 GATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
315 -ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
4347912 TTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGCTTGGGGCCAAAAATCCTTCTGAA
379 TTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAGGTTTGGGGCCAAAAATCCTTC-CAA
** * **
4347977 AAAATTTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTTTAAAATAGAAAACGAGTCG
443 AAAA-TTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
4348042 TCTTGCCATTAAACTTCACGTGAATGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAAT
507 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
4348107 GGCATTGGCATGCAGAAATATTAAGATGTGCCTAAA
572 GGCATTGGCACGAAGAAATATGAAGATGTGCCTAAA
4348143 TCTAAGATCG
Statistics
Matches: 5857, Mismatches: 603, Indels: 559
0.83 0.09 0.08
Matches are distributed among these distances:
805 134 0.02
806 86 0.01
807 10 0.00
810 2 0.00
812 2 0.00
813 1 0.00
814 1 0.00
815 1 0.00
822 1 0.00
825 7 0.00
826 3 0.00
828 1 0.00
830 1 0.00
831 4 0.00
833 1 0.00
836 8 0.00
839 186 0.03
840 27 0.00
841 4 0.00
842 71 0.01
843 92 0.02
845 3 0.00
846 3 0.00
847 122 0.02
848 2 0.00
849 1 0.00
851 1 0.00
852 89 0.02
853 3 0.00
854 2 0.00
855 1 0.00
856 2 0.00
857 3 0.00
858 11 0.00
859 5 0.00
861 7 0.00
862 86 0.01
863 473 0.08
864 7 0.00
866 20 0.00
867 2 0.00
868 5 0.00
869 8 0.00
870 9 0.00
871 89 0.02
872 4 0.00
873 57 0.01
874 1 0.00
875 3 0.00
876 3 0.00
877 141 0.02
878 250 0.04
879 258 0.04
880 266 0.05
881 146 0.02
882 6 0.00
883 10 0.00
884 392 0.07
885 347 0.06
886 555 0.09
887 243 0.04
888 323 0.06
889 62 0.01
890 3 0.00
892 1 0.00
893 2 0.00
894 1 0.00
895 2 0.00
896 79 0.01
897 31 0.01
898 346 0.06
899 94 0.02
900 201 0.03
901 107 0.02
902 83 0.01
903 4 0.00
904 2 0.00
905 1 0.00
906 2 0.00
907 1 0.00
910 2 0.00
911 2 0.00
912 218 0.04
913 10 0.00
914 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (876 bp):
CATACGAGTTATTCCCAATCTAGATGACTGACCAGGGTTGCGGCAGCACATGCTGGGCTCAGGCA
TGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCACTGGAGCATCGTCGGAGAACCTGACC
GACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACATCTACCAGGTTTGGGGCCAAAAATCCTTCCAAAAAATTTTAAAAA
ATCTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGAA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCT
CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCAGACGAACCGAGGGTTGCGGCAGCAGGATCGCAGCACGCAGAGGGG
GACCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
CTTAGGCATACGAAGTTCATTCCCAATCTAA
Found at i:4348317 original size:26 final size:26
Alignment explanation
Indices: 4348281--4348333 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4348271 GTTGACTTAG
4348281 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4348307 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4348333 G
1 G
4348334 ATTCGACTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4349210 original size:26 final size:26
Alignment explanation
Indices: 4349172--4349224 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4349162 GTTGATGTAG
*
4349172 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
4349198 GCATACGGAGTTCTTTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4349224 G
1 G
4349225 ATGGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4350637 original size:79 final size:79
Alignment explanation
Indices: 4350542--4350692 Score: 248
Period size: 79 Copynumber: 1.9 Consensus size: 79
4350532 AAGGCTTAAC
4350542 GGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCACACACAAATATGAAGATGTGCC
1 GGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCACACACAAATATGAAGATGTGCC
4350607 TAAACCATAAAAAT
66 TAAACCATAAAAAT
* * ** * *
4350621 GGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCATGCAGAAATATGAAGTTGTGCC
1 GGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCACACACAAATATGAAGATGTGCC
4350686 TAAACCA
66 TAAACCA
4350693 ACCAACCACC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
79 66 1.00
ACGTcount: A:0.41, C:0.17, G:0.18, T:0.25
Consensus pattern (79 bp):
GGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCACACACAAATATGAAGATGTGCC
TAAACCATAAAAAT
Found at i:4354185 original size:26 final size:26
Alignment explanation
Indices: 4354134--4354186 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4354124 GTTGACTTAG
* *
4354134 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
4354160 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACGGAGTTCATTCCCAGACTAA
4354186 G
1 G
4354187 ATCGAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:4356327 original size:875 final size:873
Alignment explanation
Indices: 4353263--4357530 Score: 5412
Period size: 875 Copynumber: 4.9 Consensus size: 873
4353253 TAAGCATACG
* * *
4353263 GAGTTCATTCCCAGTCTAAGATC-AGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
1 GAGTTCATTCCCAGTCTAAGATCGA-ACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGG
* * *
4353327 CATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCTTCACCGGAGAACCTGA
65 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * **
4353392 TCGACGGCATTAGGGTTTCGGGGATC-GGGGGTTCGGGGGGTGTGCGCACATGATGTGCGAT-GG
130 -CGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* * *
4353455 TGCTGGTACTTGGCTCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCTT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
4353520 TAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTATCTGAAATGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
* *
4353585 CTTTTATCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
4353649 CAACAAAAATACAAGGATCATGTCTACAAAGTTTGGGGCCAAAACTCCTTCCGAAATAATTTTAA
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * *
4353714 AAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGTAAAATAGAAAACGAGTCATCTTGCCATGA
454 AAAATCCTGAACCGCAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
4353779 AACTTCACGTGCAGGCTTAAGGGACCATT-CTATGAATTTACAAGCCATAAAAATGGCATTGGCA
519 AACTTCACGTGAAGGCTTAAGGGACCATTGC-ATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * *
4353843 TGCAAAAAT-TAAAGATGTGCCTAAACCCACCTACCACCATATCGATCCATGGCTTGCGCATCTC
583 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
4353907 GTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCACCCGCCTGCTTGTTTCATCGGTTGGCAT
648 GTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CC-CCCGCCCG-CT-C--GTTTCGTCGGTTGGCTT
* * * * * * * * * * **
4353972 AGGCATATGGAGTTCATTCCTAGTCTAAGATCGAACCGGACCAAAGGTTGCGACTGCAGGATTGG
707 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGACGATGGCGGCAGCAGGATCAG
* * ** ** *
4354037 TAGCACGCAGAGAGGGACCCGATCGATCCCCGGGCTTATGCATCCTACCCCTCTGGCCGGCTGAT
772 CAGCACGCAGAG-GGGACCCAATCGATCCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
*
4354102 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATA
835 CGCCCGCACGCTCGTTTCATGGGTTGAC-T-----TA--G-G--CA--------C--A-C--A
* * * *
4354165 CGGAGTTCATTCCCAGACTAAGATCGAACTAGACCGAGTGTTGCGGCAGCACATGCTGGGCTCGG
1 --GAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGG
* * * *
4354230 GCATGTGCTGGTGTCGCATTTTTCTTCG-CTGGGGCACCATCATCGGAGCATCGTCGGAGTACCT
64 GCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCT
* *
4354294 GACAGACGGCATTGGGG----GG-G--C-------CGGGGGGGTGTGCGCACATGATGTGTGATG
128 GAC-GACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* *
4354345 GGTGCTGTTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACACACACCCC
192 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
4354410 CTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
257 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
*
4354475 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAT
322 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
*
4354540 GCCAA-AAAAAGTACAAGGATCACGTCTACCAAGTTTGCGGCCAAAACTCCTTCCGAAAAAATTT
387 GCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * ** *
4354604 TAAAAAAT-ATCGAATCGCAAAAATTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCC
451 TAAAAAATCCT-GAACCGCAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
4354668 ATAAAACTTCATGTGAAGGCTTAAGGGACCATTGAATGAATTTACAAGCCATAAAAATGGCATTG
515 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTG
* ** * * *
4354733 CCACACAAAAATATGAAGTTGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCAT
580 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
4354798 CCCGTCTCTCTGGCCGACGTAGTGCCCG-CC-CACCCACCCGCTCGTTTTGTCGGTTGGCTTAGG
645 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * **
4354861 CATACGGAGTTCATTCCCAGTCCAAGATCAGACCAGA-C--CGA-GG-GTTA-C--G----GCAG
710 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGACGATGGCGGCAGCAGGATCAGCAG
* * **
4354914 CACGCAGAGGGTGACCCAACCGATCCCTGGCTTTTGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
775 CACGCAGAGGG-GACCCAATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
** * * *
4354979 CATACGCTCATTTCATGGGTTGACTTAGGCATACG
839 CGCACGCTCGTTTCATGGGTTGACTTAGGCACACA
*
4355014 GAGTTCATTCCCAGTCTAAGATC--A---GACCGAGGGTTGCAGCAGCACATGCTGGGCTCGTGC
1 GAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGC
* * * * *
4355074 ATGTGCTGGCGCCGAACTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGTACCTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * * * *
4355139 TGACGGCATTGGGGTTCCGGTGATCGGAGGGGTCGGGGGGTGTGCGAACATGATGTGCGATGGGT
131 -GACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
4355204 GCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTC-ATGAACTCACACCCCCT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCACACCCCCT
4355268 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
4355333 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGCATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
4355397 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGTGGCCAAAATTCCCTCCGAAAAAATTTTAA
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
4355462 AAAATCCTGAACCGCAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
454 AAAATCCTGAACCGCAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * **
4355527 AACTACACCTGAAGACTTAAGGGACCATTGCATGAATTTACAAGCCATAATTATGGCATTGGCAT
519 AACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
4355592 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAGCCACGACTTGCGCATCCCG
584 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
4355657 CCTCTCTTGCCGGCGTAGTGCCCGCCCGCCCTCTCGCCCACTCGTTTCGTCGGTTGGCTTAGGCA
649 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-C-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
4355722 TATGGAGTTCATTCTCAGTCTAAGATTGGACCAGACTGACGATGGTGGCAGCAGGATCAGCAGCA
712 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGACGATGGCGGCAGCAGGATCAGCAGCA
* ** * *
4355787 TGCAGAGCGGGACCCGGTCGATCCCCGGCTTGCGCATTCCGCCCCTCTGGCCGGCTGAGTGCCCG
777 CGCAGAG-GGGACCCAATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
*
4355852 CACGCTCGTTTCGTGGGTTGACTTAGGCACACA
841 CACGCTCGTTTCATGGGTTGACTTAGGCACACA
* *
4355885 GAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCAGCAGCACATGCTGGGCTTGGGC
1 GAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGC
* *
4355950 ATGTGCTGGTGCCACA-TTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAT
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA-
*
4356014 CG-CGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGCGGGTGTGCGCACATGATGTGCAATGGG
130 CGACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGG
**
4356078 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTGTCAAACCTCGAGAACTCACA-CCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
4356142 TAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTCAAGTGTCTAAAATGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
*
4356207 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
4356272 CAA-AAAAAGTACAAGGATGACATCTACCATGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTA
389 CAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
*
4356336 AAAAATCCTGAACCGCAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATG
453 AAAAATCCTGAACCGCAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
** *
4356401 AAACTTCACGTGAAGGCTTAAGGGACCATT-CTATGAATTTACAAGTTATAAAAATGACATTGGC
518 AAACTTCACGTGAAGGCTTAAGGGACCATTGC-ATGAATTTACAAGCCATAAAAATGGCATTGGC
* * **
4356465 ATGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCAATCGACCCACGGCACGCGCATCC
582 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
4356529 CGCCTCTCTAGCAGGCGTAGT----GCCCG--CCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCA
647 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * ** * ** *
4356588 TACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGGTAGCAGGATTGGTAGCA
712 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGACGATGGCGGCAGCAGGATCAGCAGCA
* * *
4356653 CACAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCG
777 CGCAGA-GGGGACCCAATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * *
4356718 CAAGCTCGTTTCATGGGTTGACTTAGGCATACG
841 CACGCTCGTTTCATGGGTTGACTTAGGCACACA
* * *
4356751 GAGTTCATTACTAGTCAAGCATACGGAGTTCATCCCCAGTCAAAGATAGGACCAGACCAAGGGTT
1 GAGTTCATTCCCAGT----C-TA---AG---AT---C-G---AA-CT-GGACC-G----AGGGTT
*
4356816 ACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
41 GCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * **
4356881 TCGAAGCATCGCCGGAGAACCTGACTGACGCCATTGGGG-TTCTGATGATCGGGGGGGCCGGGCG
106 TCGGAGCATCGCCGGAGAACCTGAC-GACGGCATTGGGGTTTC-GGCGATCGGGGGGGCC-GG-G
** *
4356945 GGGTGTGCATACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTA
167 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
4357010 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
232 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
4357075 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
297 GCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * *
4357140 TTTTTAGCTG-ATTTGTTTTGTACATGCCAACAAAAATACAAGAATCATGTCTGCCAAGTTTGGG
362 TTTTTAGCTGAATTT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * ** *
4357204 GCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAA
426 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAACTTTCAAAAATCATGAA
* *
4357269 AAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
491 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAAT
* * * *
4357334 TTACAAGCAATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTTCCTAAACCCACCTACCAC
556 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * *
4357399 CCTATCGATCAACAGCTTGCGTATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGGCCGCCTGC
621 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-GCC-CCCGC
* * * * * *
4357464 CCGCTCATTTCGTCCGTTGGGTTAGGCAGACGAAGTTCATTCCCAGTCTAAGATCGGACCAAACC
684 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
4357529 GA
749 GA
4357531 GGGTTACGGC
Statistics
Matches: 2970, Mismatches: 293, Indels: 202
0.86 0.08 0.06
Matches are distributed among these distances:
842 102 0.03
843 1 0.00
845 1 0.00
846 2 0.00
847 23 0.01
849 1 0.00
851 1 0.00
852 1 0.00
855 256 0.09
856 217 0.07
857 2 0.00
858 1 0.00
859 58 0.02
862 5 0.00
863 2 0.00
864 3 0.00
865 2 0.00
866 181 0.06
867 5 0.00
868 1 0.00
870 6 0.00
871 111 0.04
872 3 0.00
873 56 0.02
874 238 0.08
875 327 0.11
876 48 0.02
877 2 0.00
878 1 0.00
880 2 0.00
881 2 0.00
882 1 0.00
883 1 0.00
884 2 0.00
885 2 0.00
886 52 0.02
887 1 0.00
888 1 0.00
889 2 0.00
890 8 0.00
891 72 0.02
892 226 0.08
893 213 0.07
894 159 0.05
895 316 0.11
896 53 0.02
897 1 0.00
899 1 0.00
900 6 0.00
901 1 0.00
903 2 0.00
904 188 0.06
905 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (873 bp):
GAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
GACGGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
AATCCTGAACCGCAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGACGATGGCGGCAGCAGGATCAGCAGCACGCA
GAGGGGACCCAATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCGTTTCATGGGTTGACTTAGGCACACA
Found at i:4356791 original size:25 final size:25
Alignment explanation
Indices: 4356744--4356793 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
4356734 GTTGACTTAG
* *
4356744 GCATACGGAGTTCATTACTAGTCAA
1 GCATACGGAGTTCATCACCAGTCAA
*
4356769 GCATACGGAGTTCATCCCCAGTCAA
1 GCATACGGAGTTCATCACCAGTCAA
4356794 AGATAGGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (25 bp):
GCATACGGAGTTCATCACCAGTCAA
Found at i:4357227 original size:895 final size:893
Alignment explanation
Indices: 4355885--4357544 Score: 2438
Period size: 895 Copynumber: 1.8 Consensus size: 893
4355875 TAGGCACACA
* ** * *
4355885 GAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCAGCAGCACATGCTGGGCTTGGGC
1 GAGTTCA-TCCCAGTC-AAGAT-GGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGC
* *
4355950 ATGTGCTGGTGCCACA-TTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA-
63 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * *
4356013 TCG-CGGCATTGGGGTT-TCGGCGATCGGGGGGGCCGGGCGGGTGTGCGCACATGATGTGCAATG
128 T-GACGGCATTGGGGTTCT-GGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
**
4356076 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTGTCAAACCTCGAGAACTCACA-CCC
191 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
4356140 CTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTCAAGTGTCTAAAATGGGGA
256 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
*
4356205 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAT
321 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
4356270 GCCAA-AAAAAGTACAAGGATGACATCTACCATGTTTGGGGCCAAAACACCTTCCGAAAAAATTT
386 GCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
*
4356334 TAAAAAATCCTGAACCGCAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCA
450 TAAAAAATCCTGAACCGCAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
** *
4356399 TGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGTTATAAAAATGACATTGG
515 TGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGG
* * **
4356464 CATGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCAATCGACCCACGGCACGCGCATC
580 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
4356528 CCGCCTCTCTAGCAGGCGTAGTGCCCGCCCG-TCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
645 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * *
4356592 GAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGGTAGCAGGATTGGTAGCACACA
710 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGGTAGCACGCA
* *
4356657 GAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCAAG
775 GAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* *
4356722 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTACTAGTCAAGCATACG
840 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCAAGCATACG
* *
4356776 GAGTTCATCCCCAGTCAAAGATAGGACCAGACCAAGGGTTACAGCAGCACATGCTGGGCTCGGGC
1 GAGTTCAT-CCCAGTC-AAGAT-GGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGC
*
4356841 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGCCGGAGAACCTGAC
63 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * **
4356906 TGACGCCATTGGGGTTCTGATGATCGGGGGGGCCGGGCGGGGTGTGCATACATGATGTGCGATGG
128 TGACGGCATTGGGGTTCTGGTGATCGGGGGGGCCGGG-GGGGTGTGCGCACATGATGTGCGATGG
*
4356971 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCC
192 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
4357036 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
257 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
*
4357101 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTGTTTTGTACAT
322 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTTGTGCAT
* * * *
4357165 GCCAACAAAAATACAAGAATCATGTCTGCCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT
386 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * ** * *
4357230 AAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACTAGTCGTCTTGCCAT
451 AAAAAATCCTGAACCGCAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
4357295 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATTGGC
516 GAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * * *
4357360 ACGTAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCAACAGCTTGCGTATCC
581 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
4357425 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGGCCGCCTGCCCGCTCATTTCGTCCGTTGGGTTAGG
646 CGTCTCTCTGGCCGGCGTAGTGCCCG--C--CCG-CT--CCGCTCGTTTCGTCGGTTGGCTTAGG
* * *
4357490 CAGACGAAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTACGGCAGCA
704 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCA
4357545 CATGCTAGGC
Statistics
Matches: 684, Mismatches: 67, Indels: 23
0.88 0.09 0.03
Matches are distributed among these distances:
890 1 0.00
891 69 0.10
892 46 0.07
893 30 0.04
894 86 0.13
895 316 0.46
896 58 0.08
898 1 0.00
900 3 0.00
902 1 0.00
904 73 0.11
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (893 bp):
GAGTTCATCCCAGTCAAGATGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATG
TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACTGA
CGGCATTGGGGTTCTGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
ATCCTGAACCGCAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGGCCGGCGTAGTGCCCGCCCGCTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGGTAGCACGCAGAGGGG
GACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCAAGCATACG
Found at i:4358163 original size:716 final size:713
Alignment explanation
Indices: 4356773--4358254 Score: 2237
Period size: 716 Copynumber: 2.1 Consensus size: 713
4356763 AGTCAAGCAT
* * * * *
4356773 ACGG-AGTTCATCCCCAGTCAAAGATAGGACCAGACCAAGGGTTACAGCAGCACATGCTGGGCTC
1 ACGGAAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCTC
4356837 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGCCGGAGAACC
66 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGCCGGAGAACC
* * * * * *
4356902 TGACTGACGCCATTGGGGTTCTGATGATCGGGGGGGCCGGGCGGGGTGTGCATACATGATGTGCG
131 TAACCGACGCCATTGGGGTTCCGACGATCGGGGGGGCCGGGCGGGGTGTGCAAACATGATATGCG
*
4356967 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACAC
4357032 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* **
4357097 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTGTTTTGTA
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAATTTGTTTCATA
** * * * **
4357162 CATGCCAACAAAAATACAAGAATCATGTCTGCCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
391 CATGCCAACAAAAATACAAGAATCACATCTACCAAGCTCGGGGCCAAAACTCCTTCCAAAAAAAT
* *
4357227 TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACTAGTCGTCTTGC
456 TTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACTAGTCGTCTTGC
4357292 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATT
* * *
4357357 GGCACGTAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCAACAGCTTGCGTA
586 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACAGCTTGCGCA
* *
4357422 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGGCCGCCTGCCCGCTCATTTCGTCCGTTGGGTT
651 TCCCGTCTCTCTGGCCAGCGTAGT----G--C--CCGCCTGCCCGCTCATTTCGTCCGTTGGCTT
4357487 AGGCAG
708 AGGCAG
* *
4357493 AC-GAAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTACGGCAGCACATGCTAGGCTC
1 ACGGAAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCTC
* *
4357557 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC
66 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGCCGGAGAACC
* * * *
4357622 TAACCGATGGCATTGGGGTTCCGGCGATTGGGGGGGCC-GG-GGGGTGTGCAAACATGATATGCG
131 TAACCGACGCCATTGGGGTTCCGACGATCGGGGGGGCCGGGCGGGGTGTGCAAACATGATATGCG
*
4357685 ATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-
196 ATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACAC
* * * *
4357749 CCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTGAAGTGTCTTAAGTGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
4357814 GGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTT-TTTCAT
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-TAATTTGTTTCAT
* * *
4357877 GCATGCCAATAAAAATACAAGGATCACATCTACCAAGCTCGGGGCCAAAACTCCTTCCAAAAAAA
390 ACATGCCAACAAAAATACAAGAATCACATCTACCAAGCTCGGGGCCAAAACTCCTTCCAAAAAAA
*
4357942 TTTTAAAAAATCTCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAA-TGAGTCGTCTT
455 TTTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACT-AGTCGTCTT
*
4358006 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCAA-AAAAATGGC
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-CAATAAAAATGGC
* * ** *
4358070 ATTGGCACATAGAAATATGAAGGTGTGCCTAAACCCACCTACCAGCCTATCGATCTGCGGCTTGC
583 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACAGCTTGC
* * * *
4358135 GCATCCTGTCTCTCTGGCCAGTGTAGTGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
648 GCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCTGCCCGCTCATTTCGTCCGTTGGCTTAGGCA
*
4358200 T
713 G
* * * **
4358201 ACGGAA-TTCATTCCCAGTCTAAGATTGGACCGGACCGAGCGTTGTGGCAGCACA
1 ACGGAAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTACGGCAGCACA
4358255 ATCGGCAGCA
Statistics
Matches: 694, Mismatches: 63, Indels: 22
0.89 0.08 0.03
Matches are distributed among these distances:
708 77 0.11
709 3 0.00
710 1 0.00
712 1 0.00
715 1 0.00
716 302 0.44
717 75 0.11
718 83 0.12
719 3 0.00
720 148 0.21
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (713 bp):
ACGGAAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCTC
GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGCCGGAGAACC
TAACCGACGCCATTGGGGTTCCGACGATCGGGGGGGCCGGGCGGGGTGTGCAAACATGATATGCG
ATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAATTTGTTTCATA
CATGCCAACAAAAATACAAGAATCACATCTACCAAGCTCGGGGCCAAAACTCCTTCCAAAAAAAT
TTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACTAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATT
GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACAGCTTGCGCA
TCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCTGCCCGCTCATTTCGTCCGTTGGCTTAGGCAG
Found at i:4358382 original size:26 final size:26
Alignment explanation
Indices: 4358353--4358408 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
4358343 TGGGTTGACT
*
4358353 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
* *
4358379 TAAGCATATGAAGTTCATTCCTAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
4358405 TAAG
1 TAAG
4358409 ATCGAACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:4359482 original size:901 final size:900
Alignment explanation
Indices: 4357497--4367717 Score: 12819
Period size: 903 Copynumber: 11.3 Consensus size: 900
4357487 AGGCAGACGA
* * * *
4357497 AGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTACGGCAGCACATGCTAGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
*
4357562 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTAACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
* * ** *
4357627 GATGGCATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGTGTGCAAACATGATATGCGATGGGTG
131 GACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
4357692 CTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTA
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * *
4357756 AAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTGAAGTGTCTTAAGTGGGGACAC-
261 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
* **
4357820 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTCATGCATGCCA
326 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * *
4357885 ATAAAAATACAAGGATCACATCTACCAAGCTCGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
391 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * * *
4357950 AATCTCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAA
456 AATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * ***
4358015 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCAAAAAAATGGCATTGGCACAT
521 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * ** *
4358080 AGAAATATGAAGGTGTGCCTAAACCCACCTACCAGCCTATCGATCTGCGGCTTGCGCATCCTGTC
586 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG-TTGCGCATCCCGTC
* *
4358145 TCTCTGGCC-A-GT-GTAG--TG--CCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
650 TCTCTGGCCGACGTAGT-GCCCGCCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* ** * * * ** * *
4358203 GGAATTCATTCCCAGTCTAAGATTGGACCGGACCGAGCGTTGTGGCAGCACAATCGGCAGCATGC
714 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGTAGGATCAGCAGCACGC
* * * *
4358268 AGAGGGGGACCCGG-CTGATCCACGGCTTCCGCATCCCGCCCCTCTGGCCGACTGAGCGCCTGCA
779 AGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * *
4358332 CGCTCGTTCCATGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATATGA
843 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * *
4358390 AGTTCATTCCTAGTCTAAGATC-GAACCGGACCGAGGGTTACGACAGCACATGCTAGGCTCGGGC
1 AGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* **
4358454 ATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
65 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
* * * * ** *
4358519 CGACGGCATTAGGGTTTCGACGATC-GGGGGGCAGAGGGTCTGTGTGCACATGATGTGCGATGGG
130 CGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGG
* *
4358583 TGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCAAACCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
4358648 TAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
* * * *
4358713 CTTTTTTCAAATGGTCACAAAATCTTGTACACGTCTAGTTTTTAGCTTAATTTTTTTTTGCATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * *
4358778 CAATAAAAATACAAGGATCACATCTACCAAGCTCGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * *
4358843 AAAATCCCAAATCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCTATGA
454 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
4358908 AACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGTAC
519 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
4358972 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGTATGCGCATCCTG
584 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGT-TGCGCATCCCG
* *
4359037 TCTCTCTGGCCGACGTAGTGCCCGCCCATCCGCCCGCTCGCTCGTTTCATCGGTTGGCTTAGGCA
648 TCTCTCTGGCCGACGTAGTGCCCGCCC--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * *
4359102 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TGAGGGTTATGGTAGTAAGATCAGTAGCA
711 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGTAGGATCAGCAGCA
* * * * *
4359166 CACAGAAGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGTGCTCG
776 CGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * *
4359231 CACGCTCGTTTCATGGGTTGACTTACGCATACGGAGTTCATTCCAAGACTAAGCATACGG
841 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * *
4359291 AGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTTGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* *
4359356 TGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGTAGGAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
* * * *
4359421 GGCGGCATTGGGGTTCCGGCAATCGGGGAGGCCGGGGGGTGTGCGTACATGATGTGCGATGGGTG
131 GACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * ** * *
4359486 CTAGTAGTTGGCCCTTATATTGGCCCTGTATCCCCCATCAAACCTCCAGAACTCACACCCCCTTA
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
4359551 AAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTCAAGTGTCTAAAATGGGGACACT
261 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
*
4359616 TTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
326 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * *
4359681 A-AAAAAGTACAAGGATCACATCTACCATGTTTGGGGCCAAAACACATTCCAAAAAAATTTTAAA
391 ACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* *
4359745 AAATCCTGAACCGTAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
455 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
4359810 AATTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
520 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
4359875 CAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGTCTTGCGCATCCCGT
585 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG-GTTGCGCATCCCGT
* * * *
4359940 CTCTTTGGCCGACGTAGAGCCCACCCGCCAGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCAT
649 CTCTCTGGCCGACGTAGTGCCCGCCC-CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* ***
4360005 ACGGAGTTCATTCCCAGTCTATGATCAGACCGGACCGAGGGTTACAGTAGTAGGATC-GACAGCA
712 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGTAGGATCAG-CAGCA
* * * *
4360069 CGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCCG
776 CGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
*
4360134 CACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
841 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* *
4360194 AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* ** ** * * *
4360259 TCTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCAGAGAACTTGATC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
* * *
4360324 GGCGGCATTGGGGTTCTGACGATCGGGGGGGCCGGAGGGGTGTGCGCACATGATGTGCGATGGGT
131 GACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGT
4360389 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
4360454 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAAAT
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
* * *
4360519 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTAAATTTTTTTGTGCATCCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * **
4360584 AAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTATGAAAAAATTTTAAA
390 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
** ** *
4360649 AAATCAGGAACCACAAAAAGTTTCAAAAATC--G-----T-G---A--AGTCGTCTTGCCGTGAA
455 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
**
4360701 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
520 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* ** *
4360766 CAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCGGGGCTTGCGCATCCTGT
585 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG-TTGCGCATCCCGT
* * * * *
4360831 CTCTCTGGCCGACGAAGT-CCCTGCCCGCCCGTCCGCCCACTTGTTTTGTCGGTTGGCTTAGGCA
649 CTCTCTGGCCGACGTAGTGCCC-G-CC-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * *
4360895 TACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGGTACTAGGATCAGCAACA
711 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGTAGGATCAGCAGCA
* ** * * * *
4360960 CGTAGAGGGGGACCCGACCGATCCCTGGCTTCCGCATCCCACCCCTCTGGCCGACTGAGCGCCCG
776 CGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * * *
4361025 CACGCTCGTTT-AGTGGGTTCACTTAGGCATTA-AGAGTTCATTCCTAGTCCAAGCATACGG
841 CACGCTCGTTTCA-TGGGTTGACTTAGGCA-TACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * ** * * *
4361085 AGTTCATTCCCAGTCTAAGATCAAATC-GAACCAAAAGTTGCAGCAGCACATGCTAGGCTCGAGC
1 AGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * *
4361149 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTTGGAGAACTTGAC
65 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
* * * *
4361214 CAACGACATTGGGGTTTCGACGATCGGGGGGGCCGGGGAGGGTGTGCGCACATGATGTGCGATGG
130 CGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGG-GGGTGTGCGCACATGATGTGCGATGG
* *
4361279 GTGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTC
193 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
4361344 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
258 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
* *
4361409 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGGTGAATTTTTTTGTGCATG
323 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * * *
4361474 CCAACAAAAATACAAGGATCATGTCTA-AAATGTTTGGGGCAAAAAATCCTTTCGAAAAAATTTC
388 CCAACAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* *
4361538 AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
452 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
**
4361603 GAAACTTCACGTGAAGAATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
517 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
4361668 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACAGCTTGCGCATCC
582 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GGTTGCGCATCC
* * * *
4361733 CGTCTCTCTGGCTGGCATAGTGCCCACCCGCACGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
646 CGTCTCTCTGGCCGACGTAGTGCCCGCCC-C-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * *
4361798 CATACGGAGTTCATTCCCATTCTAAGATCGGATCGGACCGAAGGTTGTGGCAGCAGGATC-GACA
709 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGTAGGATCAG-CA
* * * * ** *
4361862 GCACGCGGTGGGGGACCCGGTCGATCCCCAGCTTGTGCATCCCGCCCCTCTAACCGGCTGAGTGC
773 GCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
4361927 CCGCACGCTCGTTTCGTGGGTGGACTTAGGCATATGAAGTTCATTCCCAGTCTAAGCATACGG
838 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * * * * **
4361990 AGTTGATTCCCAGTCTAAGCT-TGCATCGGACCGACGGTTGCAGCAGCACATGCTGGGCTCAAGC
1 AGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * * ** *
4362054 ATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCAGCATCATCGTAGCATCACCGAAGAACCTGAC
65 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
* *
4362119 CGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGG
130 CGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGG
4362184 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
4362249 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
* * *
4362314 CTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGGTTTTAGCTGAA-TTTTTTATGCATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
4362378 CAACAAAAATACGAGGATCACGTCTTCCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTGTAA
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* ** * ** * ** *
4362443 AAAATCCCGAACTGGGAAAACTTTTGAACATTGTGAAAAATAGAAAACGAGTTGTCTTGCCATGA
454 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * * *
4362508 AACTTCACATGAAGGCCTAAGGGAACATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCAC
519 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * * * *
4362573 GTAGAAATATGAAGATGTGCCAAAACCCACCAACCACCCTATCGATCCACGGCTTGTGAATCTCG
584 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG-TTGCGCATCCCG
* * * * *
4362638 TCTCTCTGGTCGGA-GTAGTGCTCG--CCCACCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCAT
648 TCTCTCTGG-CCGACGTAGTGCCCGCCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * ** * * *
4362700 ACAGAGTTCATTCCTAGTCTAAGATTAGACCGGACTGAGGGTTGTGACAGCAGGATCGGTAGCAC
712 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGTAGGATCAGCAGCAC
* * * * * * *
4362765 ACAGAAGGGGACCCGATCGATCCCCAGCTTGCGCGTCCCACCCCTCTGGCCGGTTGAGCGCCCGC
777 GCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* ** * *
4362830 ACACTCGTTTTGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAAGCATACGG
842 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * ** *
4362889 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGATAGCACATGCTGGGCTCGAGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * * **
4362954 TGTGCTGGTGCCGCATTTTTCATCGCCAGGGCACCATCTTCGGAGCATCACCGGAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
* *
4363019 GACGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
131 GACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
4363084 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACGCACACCCCCTTA
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
4363149 AAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTC-AGAAAAGGGGACAA
261 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA-AAATGGGGACAC
* * *
4363213 TTTTTTCAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAATTGTTTTGTGCAAGCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * *
4363278 AAAAAAAATACAAGGATCACGTCTACTAGGTTTGGGGTCAAAACTCCTTCTGAAAAAATTTTAAA
390 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * * * *
4363343 AAATCCCAAACAGCAAAAAGTTT-AAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAA
455 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * ** * **
4363407 ACTTCACGTGAAGGCTTAAGGGACAATTGTTTGAATTTACAAGCCACGAAATTGGCATTGGCACA
520 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
4363472 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGC
585 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GGTTGCGCATCCCGT
** *
4363537 CTCTCTGGCCGGTGTAGT----G--CCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATAC
649 CTCTCTGGCCGACGTAGTGCCCGCCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
** * * * * * *
4363596 GGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGATGTGGCAGTAGGA-CTGGCAGCATG
714 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGTAGGATC-AGCAGCACG
* * ** * ** *
4363660 CAGAGGGGAACTCGACCAATCCCCGGCTTGCGCATCTTGCCCCTCTGGTCGGCTGAGCGCCCGCA
778 CAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
4363725 TGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGG
843 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * ** *
4363783 AGTTCATTGCCAGTGTAAGATCGGACTAGACCGATAGTTGCAGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * **
4363848 TGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTC-GAGCATCGTCGGAGAACCTAAAG
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
* ** * * * *
4363912 GACAGCATTAAGGTTCTGGCGAT-TGGGGGGCATGGGGGGTGTGCGCACATGATATGCGATGGGT
131 GACGGCATTGGGGTTCCGGCGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
4363976 ACTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
4364041 AAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
* * *
4364106 TTTTTTCAAATGGTCGCAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGCATGCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
4364171 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAA
390 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
**
4364236 AAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
455 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
4364301 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
520 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
*
4364366 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGT
585 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GGTTGCGCATCCCGT
* * *
4364431 CTCTCTGGCCGGCGTAGTGCCCACACGCCCGCCCGCCCGGTCGTTTCGTCGGTTGGCTTAGGCAT
649 CTCTCTGGCCGACGTAGTGCCCGC-C-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* ** * *
4364496 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGTAGCAAGATC-GACAGCA
712 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGTAGGATCAG-CAGCA
* * * * * **
4364560 CGCAGAGGGGGACCCGGTCGATACCCGACGTGCGCATCCC-ACCCTCTGGCCGACAAAGCGCCCG
776 CGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * * *
4364624 CACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTATGCATACGG
841 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * * *
4364684 AGTTCTTTCCCAGTCTAAAATCAGACCAGATCGAGCGTTGCGGCAACACATGCTGGGCTCAGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* ** *
4364749 TGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACA
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
* * * * * * *
4364814 GGCGGGATTGGGGTTCCGGCGATTGAGGGGGCCGGGGGGGTGTGTGCACATGATGTGTGATGAGT
131 GACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
4364879 GCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCGCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
4364944 AAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAT
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
4365009 TTTTTTCAAATGGTCACAAAATCTTGTACACTTC-AGGTTTTTAGCTGAATTTTTTTGTGCATGC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
4365073 CAACAAATATACAAGGATCATGTCTGCCAAGTTTGGGGCCAAAACTCCTTCC-AGAAAAATTTTT
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA-AAAAATTTTA
* * *
4365137 AAAAATCCCAAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATG
453 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * * *
4365202 AAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTAGAAGCAATAAAAATGGCGTTGGCA
518 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * *
4365267 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCAATGCTTGTGCAGCCC
583 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC-ACGGTTGCGCATCCC
* ** * * * *
4365332 GTCTCTCTGGTCGGTGTAGTGCCCACCCGCCTACCCGCCCGGTCATTTCGTCGGTTGGCTTAGGC
647 GTCTCTCTGGCCGACGTAGTGCCCGCCC-CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* ** *** * ** * * *
4365397 ATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTA--GTCTAAGCATACGAAGTTC
710 ATACGGAGTTCATTCCCAGTCTAAG-AT-C--AGACCGGACCGAGGGT-TGTG-GTA-GTAG--G
* * * * ** * *** *
4365460 ATTCCCAGTCTAAGATTGGACCGAACTGAGGGATGTGA--CAGTATGATCGGCAGCACACAG-AG
766 A-T--CAG-C----A--GCA-CG--CAGAGGG--G-GACCCGGT-CGATCCCCGGCTTGC-GCAT
*** * ** * * * * * ** * *
4365522 GGGGACCCGATCGATCCCCGGCTTATGCATCCCGGCCCTCTGGTCGGC-TGAGCGCCCGCATGCT
813 CCCG-CCC-CTC--TGGCCGGCTGA-GC-GCCC-GCACGCTCGT-TTCAT--G-G---G-TTG-A
* ** ** * *
4365586 CGTTTCGTTGGTTGACTTAG-GCATACGGAGTTCATTCCCAGTTTAAGCATACGG
862 C--TTAG--GCAT-ACGGAGTTCA-----------TTCCCAGTCTAAGCATACGG
* * * * * * * *
4365640 AGTTTATTGCCAGTCTAAGATCAGACCGGACCAAGAGTTACAGCAGCACATGTTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * ** * ** * *
4365705 TGTGCTGGTACTGTATTTTTCTTCACCGAGGCACCATCACCAGAGCATCGTCGGAGAACTTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
** * *
4365770 GACGGCATTGGGGTTCTAGCGAT-TGGGGGGCGTGGGGGGTGTGCGCACATGATGTGCGATGGGT
131 GACGGCATTGGGGTTCCGGCGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
4365834 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTTGAGAACTTACACCCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
4365899 GAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
* * * *
4365964 TTTTTTCAAATGGTCACAAAATCTTGTAGAATTTGAGTTTTTAGCTGAATTTTTTTGTACATGCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * **
4366029 AACAAAAATACAATGATCACGTCAATTAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
390 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* ** * *
4366094 AAATCCCGAATCGTAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCATCTTGCCATGAA
455 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
4366159 ACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCATA
520 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
4366224 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
585 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG-TTGCGCATCCCGT
* * * *
4366289 CTCTCTGGCCGGCGTAGTGCCCG--CCCGCCCGTCCGCTCGTTTTGTTGGTTGGCTTAGGCATAC
649 CTCTCTGGCCGACGTAGTGCCCGCCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * *
4366352 -GAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGGGGTAGCAGGAT-AGGCAGCACG
714 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGTAGGATCA-GCAGCACG
*** * * ** * * *
4366415 CAGAGGGGGACCCTACCGATCCCCGACTTACGCATCTTGCCCCTCTTGCCGGCTGAGCACACGCA
778 CAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
**
4366480 CGCTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCATACGG
843 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * *
4366538 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTAGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * * * * * *
4366603 TTTGTTGGAGCCACATTTTTCTTC-ACTGGGGCACCATCGTCAGAGCATCG-CTGAACAACCTGA
66 TGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTGA
* * *
4366666 CCGACGGCATTGGGGTTCCGTCGATCGGGGGGACTGGGGGG-GTGCGCACATGATGTGCGATGGG
129 CCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
4366730 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAGCTCACACCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
4366795 TAAAGAGCATTTCAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGAGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
* * * *
4366860 CTTTTTTCAAATGGTCCCAAAATCTTGTACACTTTGAGTTTTTAGCTAAATGTTTTTGTGCATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* *
4366925 CAACAAAAATACAAGGATCACGGCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAA
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* *
4366990 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
454 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
4367055 AACTTCACGTGAAGGCTTAGGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCAT
519 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * *
4367120 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCATAGCTTGCGAATCCCG
584 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGGTTGCGCATCCCG
* * * * * * *
4367185 TCTCTCTGACCGACGTAGTGCGCACCCGTCTGCCCACCCGATCGTTTCATCGGTTGGCTTAGGCA
648 TCTCTCTGGCCGACGTAGTGCCCGCCC--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * *** * *
4367250 TATGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTGCAACT-GTAAGATCAACAGC
711 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG-TGGTAGTAGGATCAGCAGC
* * * *
4367314 ACGCTGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGACTGAGCGCCC
775 ACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * *
4367379 GCATGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGCATATGG
840 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * * * *
4367440 AGTTCTTTCCCAGTCTAAAATCGGACCAGATCGAGGGTTCCGACAGCACATGCTGGGCTCGAGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * ** * ** **
4367505 TGTGCTGGTGTCGTATTTTTCTTCACCGGAGCACCATCGTCGGAGCATCACCGGAGAACCTGATA
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
** * * *
4367570 GGTGGCATT-GGGTTTCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATAGGTG
131 GACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
4367634 CTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTTATCAAACCTCGAGAACTCACACCCCTTTA
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
4367699 ATGAGCATTTTAGATTTTA
261 AAGAGCATTTGAGATTTTA
4367718 GGTTTGAGTT
Statistics
Matches: 8123, Mismatches: 1029, Indels: 343
0.86 0.11 0.04
Matches are distributed among these distances:
890 5 0.00
891 482 0.06
892 322 0.04
893 548 0.07
894 613 0.08
895 228 0.03
896 4 0.00
897 466 0.06
898 510 0.06
899 437 0.05
900 10 0.00
901 851 0.10
902 760 0.09
903 1069 0.13
904 500 0.06
905 480 0.06
906 8 0.00
907 7 0.00
908 5 0.00
909 4 0.00
910 1 0.00
911 4 0.00
913 2 0.00
914 4 0.00
915 1 0.00
918 2 0.00
919 1 0.00
920 3 0.00
921 10 0.00
922 2 0.00
923 8 0.00
924 11 0.00
925 8 0.00
926 5 0.00
927 8 0.00
928 13 0.00
929 1 0.00
930 12 0.00
931 2 0.00
932 5 0.00
933 10 0.00
934 1 0.00
935 2 0.00
936 1 0.00
939 3 0.00
940 3 0.00
941 1 0.00
942 1 0.00
943 4 0.00
945 7 0.00
946 9 0.00
947 2 0.00
948 3 0.00
949 2 0.00
950 19 0.00
951 31 0.00
952 2 0.00
953 1 0.00
954 2 0.00
955 466 0.06
956 141 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
GACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
AATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGTTGCGCATCCCGTCT
CTCTGGCCGACGTAGTGCCCGCCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGTAGGATCAGCAGCACGCAG
AGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
Found at i:4360190 original size:26 final size:26
Alignment explanation
Indices: 4360160--4360212 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4360150 GTTGACTTAG
4360160 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4360186 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4360212 G
1 G
4360213 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4364686 original size:26 final size:26
Alignment explanation
Indices: 4364650--4364700 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4364640 GTTGACTTAG
*
4364650 GCATACGGAGTTCATTCCCTGTCTAT
1 GCATACGGAGTTCATTCCCAGTCTAT
*
4364676 GCATACGGAGTTCTTTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
4364701 AAATCAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.20, C:0.27, G:0.20, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAT
Found at i:4365432 original size:26 final size:26
Alignment explanation
Indices: 4365395--4365473 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
4365385 GTTGGCTTAG
4365395 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
4365421 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
4365447 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
4365473 G
1 G
4365474 ATTGGACCGA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:4365635 original size:26 final size:26
Alignment explanation
Indices: 4365606--4365658 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4365596 GTTGACTTAG
*
4365606 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
4365632 GCATACGGAGTTTATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4365658 G
1 G
4365659 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4366534 original size:26 final size:26
Alignment explanation
Indices: 4366504--4366556 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4366494 GTTGACTTAG
*
4366504 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
4366530 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4366556 G
1 G
4366557 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4367436 original size:26 final size:26
Alignment explanation
Indices: 4367406--4367457 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
4367396 GTTGACTTAT
4367406 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
4367432 GCATATGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4367458 AATCGGACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4368272 original size:26 final size:26
Alignment explanation
Indices: 4368220--4368272 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4368210 GTTGACTTAG
*
4368220 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
* *
4368246 GCATACGGAGTTCATTGCCAGAGTAA
1 GCATACGGAGTTCATTCCCAGACTAA
4368272 G
1 G
4368273 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:4371834 original size:26 final size:26
Alignment explanation
Indices: 4371804--4371855 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
4371794 GTTGACTTAG
4371804 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
4371830 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4371856 AATCGGACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4372208 original size:904 final size:901
Alignment explanation
Indices: 4369123--4374495 Score: 6913
Period size: 904 Copynumber: 6.0 Consensus size: 901
4369113 GTTGACATAG
* *
4369123 GCATATGGAGTTGATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA-GGTTGCGGCAGCACATGCTGGG
* * * * * *
4369188 CTTGGGCATGTGCTGGTGCCGTATTTTTCTTCGTTGGGGCACCATCGCAGGAGCATCATTGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
4369253 ACCTAACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGCC-GGGGGGTGTGCGTACATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
4369317 GATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
4369382 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTCTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
* *
4369447 GGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
4369512 GCAAGCCAACAAAAATACAAGGATCATGTCTACCAGGTTTGGGGCCAAAACTCCTTCCGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * * *
4369577 TTTAAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAACAAAAAATGAGTCGTCTTC
454 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
** * * *
4369642 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACTGGCCATGAAATTGGAAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
**
4369707 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
584 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
4369772 ATCCCGTCTCTCTGGCCGACGTAGTGCCTACCCACCCGTCTGCCC-GTCCGCACATTTCGTCGGT
649 ATCCCGTCTCTCTGGCCGGCGTAGTGCCTACCCGCCCGCCCGCCCGGT-CG----TTTCGTCGGT
* * * *
4369836 TGGCTTAGGCATACGGATTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGA--AGCGGTAGC
709 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGAACAGACTGA-GGATTA-CGGCAGC
* * * * * * *
4369899 AGGACCGACAGCACGCAGAGGAGGACCCGACCGATCCCCGGCTTGCGCATCCCGTCCTTCTGGTC
772 AAGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
4369964 GGTTGAGCGCCCGCATGCTCGTTTCATGAGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
837 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
4370029 GCAAACAGAGTTCATTGCCTGTCTAAGATCGGACCGAACCGAGAGTTACGGCAGAACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG-GTTGCGGCAGCACATGCTGGG
* *
4370094 CTCGGGCCTGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* ** * * * *
4370159 ACCTGACCGACGGCATTGGGGTTCTAGCGATTGGGGGGGCGTGGGAGGTGTTCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCG-GGGGGGTGTGCGCACATGATGTG
*
4370224 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
4370289 ACACCCTAAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* * * *
4370354 GGGAACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGTTAAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *** * **
4370419 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGTTGAAAAATCCTTTAGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** *
4370484 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATATTGAAAAATA-AGTAACGAGTCGTCT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGA-AAACGAGTCGTCT
* * *
4370548 TGCCATGAAACTTCATGTGAAGGCTTAAAGGACGATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
4370613 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCATCGTATCGATCCACGGCTTGC
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
4370678 GCATCCCGTCTCTCTGGCCGGTGTAGTG----CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCTACCCGCCCGCCCGCCCGGTCGTTTCGTCGGTTGG
* * * ** *
4370739 CTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGA-GAAAGCAGGA
712 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGAACAGACTGAGGATT-ACGGCAGCAAGA
* *** * * * *
4370802 TCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCATACTTACGCATGCCACCCCTCTGGTCGGCT
776 TCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
** ** * * * *
4370867 GAGCGTACGCACGCTCGTTTTGTGAGTTGACTTAGGCATACGTAGTTCATTTCTAGTCTAA
841 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
4370928 GCAGATGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAAGGTTACAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG-AGGTTGCGGCAGCACATGCTGGG
* * * * * ** * * *
4370993 CTCGAGCATGTGTTGGAGCCTCATTTCTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGAAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* ** *
4371058 ACCTGACCGGCAGCATTGGGGTTCCGTTGATCGGAGGGACC-GGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTG
*
4371122 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
4371187 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* * * * *
4371252 GGGGACACTTTTTTCAAATGGTCCCAAAATCTTTTACAGTTTGAGTTTTTAGCTGAATGTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
4371317 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCTTTCCAAAAAA
388 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
4371382 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAGAACGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
4371447 GCCATGAAACTTCACGTGAAGGCTTAAGGG-CCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * * *
4371511 TTGGCCTGTAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATACACAGTTTGTG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * **
4371576 CATCCCGTCTCTTTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGGTCGTTTTATCGGTTGGC
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCTACCCGCCCGCCCGCCCGGTCGTTTCGTCGGTTGGC
* * * *
4371641 TTAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGAATAGACTGAGGATTACGGCAGCAAGATC
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGAACAGACTGAGGATTACGGCAGCAAGATC
* * * * * *
4371706 GGCAGCATGCAGAGGGGGACTCGGCCGATCACCGGCTTGCGCATCCCGCCCCACTGGCCGACTGA
778 GACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
4371771 GCGCCCGCACGTTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
4371830 GCATACGGAGTTCTTTCCCAGTCTAAAATCGGACCAGATTGAAGGTTGCGGCAGCACATGCTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG-AGGTTGCGGCAGCACATGCTGGG
* **
4371895 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCG-CTGGGGCACCATCGCCGGAGCATCACCGGAG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGTCGGAG
* * * *
4371959 AACCTAACAGGCAGCATTGGGGTTCCGGCGATCGAGGGGGCCGAGGGGGGTGTGCACACATGATG
129 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCG-GGGGGCCG-GGGGGGTGTGCGCACATGATG
* *
4372024 TGCAATGGGTGCTGGTACTTGGCCCTTAAATTGGCCCCGTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAACTC
* * * *
4372089 ACACCCCCTTCAAGAGCATTTGATATTTTACAGGTTTGGTGCCAGTAGCCATTAAAGTGTCTTAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
*
4372154 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
4372219 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTC-AA
386 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CGAA
* ** * *
4372283 AAAATTTTTAAAAATCCCGAACCGCAAAAA-TTTCAAAAATCAAGAAAATTAGAAAATGAGTCGT
450 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
4372347 CTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
4372412 GCATTGGCATGCATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
580 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * ** * * *
4372477 GCGCAGCCCGTCTCTCTGGTCGGCATAGTGCCTACCCACCTGCCTACTCGGTCGTTTCATCGATT
645 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTACCCGCCCGCCCGCCCGGTCGTTTCGTCGGTT
* * * *
4372542 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGACTGAGGGTTGCAGCAGCAAG
710 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGAACAGACTGAGGATTACGGCAGCAAG
* * * * * *
4372607 ATCAACAGCACACAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATCCCGCCTCTCTGGCCGAC
775 ATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* *
4372672 TGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** *
4372734 GCATATAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA-GGTTGCGGCAGCACATGCTGGG
** * * * ** *
4372799 CTCTTGCATGTGCTAGTGCCGTATTTTTCTACGTCGACGCACCATCGCTGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
4372864 A-CT---------CA--------------AAC------CC------CT-T----AAATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* *
4372888 -AGTGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 GA-TGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
4372952 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* * * * *
4373017 GGGGACACTTTTTTCAAATGGTCCCAAAATCTTTTACAGTTTGAGTTTTTAGCTGAATGTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
4373082 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCTTTCCAAAAAA
388 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
4373147 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAGAACGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
4373212 GCCATGAAACTTCACGTGAAGGCTTAAGGG-CCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * * *
4373276 TTGGCCTGTAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATACACAGTTTGTG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * **
4373341 CATCCCGTCTCTTTGGCCGGCGTAGTGCCCACCCGCCCGCCCGCCCGGTCGTTTTATCGGTTGGC
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCTACCCGCCCGCCCGCCCGGTCGTTTCGTCGGTTGGC
* * *
4373406 TTAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGAACAGACTGAGGATTACGGCAGCAAGATC
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGAACAGACTGAGGATTACGGCAGCAAGATC
* * * * * * *
4373471 GGCAGCATGCAGAGGGGGACTCGGCCGATCACCGACTTGCGCATCCCGCCCCACTGGCCGACTGA
778 GACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
4373536 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCGAA
843 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * ** *
4373595 GCATACGGAGTTCTTTCCCAGTCTAAAATTGGTCCAGATTGAAGGTTGCGGCAGCACATGCTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG-AGGTTGCGGCAGCACATGCTGGG
* *
4373660 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCG-CTGGGGCACCATCGCCGGAGCATCATCGGAG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGTCGGAG
** * *
4373724 AACCTGACAAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATA
129 AACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCC-GGGGGGGTGTGCGCACATGATG
* *
4373789 TGCGATGGGTACTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
4373854 ACACCCCTTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
* *
4373919 ATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
4373984 TATGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
386 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** * *
4374049 AAATTTTTAAAAATCCCGAACTGCAAAAA-TTTCAAAAATCAAGAAAATTAGAAAATGAGTCGTC
451 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
4374113 TTCCCATGAAACTGCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
4374178 CATTGGCACT-CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTT
581 CATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
4374242 GCGCATCCCGTCTCTCTGGCCGGGGTAGTG----CCCGCCCGCTCGCCCGCTCGTTTTGTCGGTT
645 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTACCCGCCCGCCCGCCCGGTCGTTTCGTCGGTT
* * * * * * * * *
4374303 GGCTTAGGCATACGAAATTCATTCCCATTCTAAGATT-GCACTGGACTGAGGGTTGCTGTAGC-A
710 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGAAC-AGACTGAGGATTACGGCAGCAA
** * * * * **
4374366 GAATCGACAGCACATAGAGGGGGACCTGGTCGATTCTCGGCTTGCGCATCTTGCCCCTCTGGCCG
774 G-ATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
** * * * **
4374431 ATTGTGCGCCCGCACGCTCGTTTCGTGGGTTGACCTAGGCATATAGAGTTCATTCCCAGTCTAA
838 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
4374495 G
1 G
4374496 GGCCAAGTAC
Statistics
Matches: 3885, Mismatches: 501, Indels: 168
0.85 0.11 0.04
Matches are distributed among these distances:
860 3 0.00
861 686 0.18
862 68 0.02
865 1 0.00
866 1 0.00
871 2 0.00
873 2 0.00
880 2 0.00
885 2 0.00
892 2 0.00
894 2 0.00
897 113 0.03
898 345 0.09
899 286 0.07
900 212 0.05
901 43 0.01
902 285 0.07
903 129 0.03
904 1098 0.28
905 6 0.00
906 144 0.04
907 1 0.00
908 451 0.12
909 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCTACCCGCCCGCCCGCCCGGTCGTTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATTAGAACAGACTGAGGATTACGGCAGCAAGATCGAC
AGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:4372737 original size:26 final size:26
Alignment explanation
Indices: 4372708--4372760 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4372698 GTTGACTTAG
*
4372708 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
4372734 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4372760 G
1 G
4372761 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4375193 original size:26 final size:26
Alignment explanation
Indices: 4375164--4375216 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4375154 GTTGACTTAG
*
4375164 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
4375190 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4375216 G
1 G
4375217 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4376816 original size:26 final size:26
Alignment explanation
Indices: 4376787--4376839 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4376777 GTTGACTTAG
4376787 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
4376813 GCATATGGAGTTCATTGCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
4376839 G
1 G
4376840 ATAGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:4377708 original size:26 final size:26
Alignment explanation
Indices: 4377679--4377731 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4377669 GTTGACTTAG
*
4377679 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
4377705 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4377731 G
1 G
4377732 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4378610 original size:26 final size:26
Alignment explanation
Indices: 4378581--4378633 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4378571 GTTGACTTAG
4378581 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
4378607 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4378633 G
1 G
4378634 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4379518 original size:26 final size:26
Alignment explanation
Indices: 4379477--4379534 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
4379467 CGTGGGTTGA
4379477 CTAAGGCATACAGAGTTCATTCCCAGT
1 CTAA-GCATACAGAGTTCATTCCCAGT
*
4379504 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACAGAGTTCATTCCCAGT
4379530 CTAAG
1 CTAAG
4379535 ATTAGACCAG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 26 0.87
27 4 0.13
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
CTAAGCATACAGAGTTCATTCCCAGT
Found at i:4379585 original size:901 final size:899
Alignment explanation
Indices: 4375548--4385632 Score: 12315
Period size: 901 Copynumber: 11.3 Consensus size: 899
4375538 AGTTTGGGGT
* * * *
4375548 GAACCACAAAAAGTTTCAAAGATCGTAAAAAATAGAAAACGAGTCGTTTTGCCATGAAACTTCAC
1 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
4375613 GTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCACGCAGAAAT
66 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* *
4375678 ATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACTGCTTGCGCATCCCGTCTCTCTG
131 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* ** *
4375743 GCCGGCGTAGT----G-CCCGCCTGCCTACTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTCA
196 GCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * *
4375803 TT-CCTGATCTAAGATCAGA-CAGGATTGAGGGTTGCGGTAGGAGGATCGGCAGCACGCAGAGGA
261 TTCCCAG-TCTAAGATCAGACCA-GACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
* * ** * *
4375866 GGACCTGACCGATCC-CTGGCTTGCGCATCCCGCCCCTCTGGTTGGCTAAGC-CCCGCA-GCT--
324 GGACCCGACCGATCCTC-GGCTTGCGCATCTCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCG
* * * *
4375926 TTTCAT-GG-TGACTTAGGCATATGGAATTCATTCCCAGT-TAAG-ATACGGAG-TCATTCCCAA
388 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * * * * *
4375986 TCTAAGATCAGA-CGGACTGA-GATTGCGACAGCAAATGCTGGGCTCAGGCATGTGTTGCTGTCG
453 TCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * *
4376049 CATGTTTCTTCGCCGGGG-----T-G-C----CATCACCGGAGAACCTGATCGACGGC-------
518 CATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTAGGG
* ** * * *
4376096 TT-C-ACGATCGGGGGGCAAAGGTGGTGT--GCACGT-ATGTGTGA-GGTGTG-TGGTA------
583 TTCCGGCGATCGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGG-GTGCTGGTACTTGGC
* * * **
4376148 ACTTAAATTGG-CCTCTA-CTGT-ATCAAACCT---GAACTCACACCCCCTTAAAGAGCA-TTGA
646 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
4376206 GATTTTACAGGGTTTGCTGCCAGTAG-C-TTAAAGTG-CTTG-GATGGGG-CACTTTTTTCAAGT
711 GATTTTACA-GGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAATGGGGACACTTTTTTCAAAT
* *
4376266 GGTCACAAAAT-TTGTACACTTC-A-TGTTTTAGCCTGAATTTTTTTGTGCATCCCAACAAAAAC
774 GGTCACAAAATCTTGTACACTTCGAGT-TTTTAG-CTGAATTTTTTTGTGCATGCCAACAAAAAT
* * *
4376328 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATTCTTCCAAAAAAATTTTAAAAAATCCC
837 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
** * *
4376391 GAGTCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGACACTTCAC
1 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* ** *
4376456 GTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAAT
66 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * *
4376521 ATGAAGATGTGCGTAAACCCACCTAGCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTG
131 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* ** * *
4376586 GCCAGCGTAGT---------GCCCGCCTACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTA
196 GCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* *** * * * *
4376642 TTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCCATAGTC-GGATCAGCAGCACACAAAAGGG
261 TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAG-CAGGATCGGCAGCACGCAGAGGGG
** * * * * * ** * *
4376706 GACCCGGTCGATCCCCGGCTTGAGCATCCCGCCCCTCTGGCCGGCTGAGCGGCCTTATGCTCGTG
325 GACCCGACCGATCCTCGGCTTGCGCATCTCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTT
* * *
4376771 TCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTGCCAGTC
390 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * * * * * * *
4376836 TAAGAT-AGGACCAGACCAAGGGTTGTGGTAGCACAAGCTAGGCTTGTGCTTGTGCTGGTGCCAC
455 TAAGATCA-GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * *
4376900 ATTTTTCTTC-CTCGGGGCACCATCACCGGAGCATCACCGAAGAACCTGACCGACGGCA-TAGTG
519 ATTTTTCTTCGC-CGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTAG-G
4376963 GTTCCGGCGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
582 GTTCCGGCGATCGG-GGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* ** *
4377028 CCCTTATATTGGCCCCCAATCCCTCATCAAATATCGAGAACTCACACCCCCTTAAAGAGCTTTTG
645 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * * * *
4377093 AGATTGTACTGGTTTGCTGCCAGTAGCCATTAAAGGGTCTGAAATAGGGACATTTTTTTCAAATG
710 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
*
4377158 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAACAAAAATACA
775 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* *
4377223 AGGATCACGTCTACCAAGTTTAGGGCCAAAA-TCCTTTCGAAAAAATTTTAAAAAATCCC
840 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * * * * *
4377282 AAACCACAAAAAGTTTCAAAAATTGTGAAAAATAGAAAAAGAGTCGTC-TGACCGTGATACTTCA
1 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG-CCATGAAACTTCA
* * ***
4377346 CGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGACATTGGCACATAGAAA
65 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * * ** * *
4377411 TATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGCATTTCGCCTCTCA
130 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
4377476 AGCCGACGTAGTGCCCG-CCCGCCCACCCGCTCATTTCATCGGTTGGCTTA-G-----GGAGTTC
195 GGCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * * * * *
4377534 ATTCCTAGTCTAAG-GCCGATCAGA-TCAAGGGTTGCGACAGCAGGATCAGCAGCATGCAGAGGG
260 ATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
* * * * * * *
4377597 GGACCCGGCCGATCC-CTGACTTGCGCATCCCACCCCTTTGGCCGACTGAGCTCCCGCTCGCTCG
324 GGACCCGACCGATCCTC-GGCTTGCGCATCTCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCG
* * *
4377661 TTTCGTGGGTTGACTTAGGCATACAGAGTTTATTCCCAGTCTAAGCATACGGAGTTCGTTCCCAG
388 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* *
4377726 TCTAAGATC-GAACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCAAGTGCTGGTGCC
453 TCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * *
4377790 ACATTTTTCTTCGCCAGGGCACTATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATT-GA
517 GCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTAG-
* *
4377854 AGTTCCGGCGATCGGGGGGGCCGGAGGG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
581 GGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
4377918 CCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
645 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
4377983 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATG
710 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
4378048 GTCACAAAATCTTGTACACTTCAAGTTTTTACCTGAATTTTTTTGTGCTTGCCAACAAAAATACA
775 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* *
4378113 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCT
840 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* *
4378173 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTGTTGCCATGAAATTTCAC
1 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
4378238 GTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATTGCATTGGCATGCAGAAAT
66 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * *
4378303 ATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTA
131 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * * *
4378368 GCCGGCGTAGTTCCCGGCCTCCCACCCGCCCGTTCGTTTCGTCAGTTGGCTTAGGCATACGGAGA
196 GCCGGCGTAGTGCCC-G-C-CCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * *
4378433 TCATTCCCAATCTAAGATCGGACC-GAACTGAGGGTTGCAGCAGCAAGATCGGCAGCATGCAGAG
258 TCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
* * * *
4378497 GGGGACCCGGCCAATCCTCGGCTTGCGCATC-CAGCCCCTCTGGCC-AGCTGAGCGCCAGTACGC
322 GGGGACCCGACCGATCCTCGGCTTGCGCATCTC-GCCCCTCTGGCCGA-CTGAGCGCCCGCACGC
**
4378560 TTATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
385 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* ** * *
4378625 TAGTCTAAGATCAGACTGGACCAAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
450 CAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * **
4378690 CCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCAGGAGAACCTGATTGGCGGCATTA
515 CCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTA
*
4378755 GGGTTCCGGCTATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
580 GGGTTCCGGCGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
4378820 GGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
643 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
4378885 GGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
708 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * *
4378950 TGGTCACAAAATATTGTACACTTCGATTTTTTAGCTGAA-TTTTTTGTGCTTGCCAACAAAAATA
773 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
*
4379014 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTTAAAAATCCC
838 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * * *
4379076 GAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCA-
1 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
4379140 GTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAAT
66 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * * *
4379205 ATGAAGATGTGCGTAAACCCACCTACCA-CCTATCGATCCACGGCTTACGCATCTCGTCTTTCTG
131 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* *
4379269 GCCGGCGTAGTGCCCGCCCGACCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
196 GCCGGCGTAGTGCCCG-CC--CCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGT
* ** * * *
4379334 TCATTCCCAGTCTAAGATCAGACCAGACTGAGTGTTTTGGTAGTAGGATCGGTAGCACGCAGAGG
258 TCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGG
* * * **
4379399 GGGACCCAACCGATCCTCGGCTTGGGCATCTCGCCCCTTTGGCCGACTGAGCGCCCGCACTTTCG
323 GGGACCCGACCGATCCTCGGCTTGCGCATCTCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCG
* *
4379464 TTTCGTGGGTTGACTAAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
388 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * ** * * *
4379529 TCTAAGATTAGACCAGATCTTGGGTTGCGATC-GCACATGCTGGGCTCGGACATGTGCTGGTGTC
453 TCTAAGATCAGACCAGACCGAGGGTTGCG-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * *
4379593 GCATTTTTCTTCGCCAGGGCACCATCGTCGAAGCATCGCCGGAGAACCTGACCGACGGCATT-GA
517 GCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTAG-
* * * *
4379657 GGTTCCGACGATCGAGGGGGCC-GGGGTTGTGTGCACATGATGTGCGGTGGGTGCTGGTACTTGG
581 GGTTCCGGCGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
4379721 CCCTTATATTGGCCCCCTATCCCTCATCAAACTTTGAGAACTCACA-CCCCTTAAAGAGCATTTG
645 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
4379785 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
710 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
4379850 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACA
775 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * * * * *
4379915 AGGATCACATCTTCCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTGAAAAATTCT
840 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * ** *
4379975 GAGCCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACCTGTCGTGTTGCCATGAAACTTCAC
1 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
4380040 GTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATTGCATTGGCATGCAGAAAT
66 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * * * * *
4380105 ATGAAGATGTGCCTAAACCCACCAACCACCCTACCGATCCACAGCTTGCGCATCCCATATCTCTA
131 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * * * * * * * *
4380170 GCCGACGTAGTTCCCAACCTCCCACCCACCCGTTCGTTTCGTCAGTTGGCTTAGGCGTACAGAGA
196 GCCGGCGTAGTGCCC--GC-CCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * * * *
4380235 TCATTCCCAATCTAAGATCGGACCAAACTGAGGGTTGCAGTAGCAAGATTGGCAGCATGCAGAGG
258 TCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGG
* * * *
4380300 GGGACCTGGCCAATCCTCGGCTTGCGCATC-CAGCCCCTCTGGCC-AGCTGAGCGCCCGTACGCT
323 GGGACCCGACCGATCCTCGGCTTGCGCATCTC-GCCCCTCTGGCCGA-CTGAGCGCCCGCACGCT
* * * * *
4380363 CATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCAAATCTAAGCATACGGAGTTCATTCCT
386 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * *
4380428 AGTCTAAGATCAGACCGGACCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGT
451 AGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* ** * *
4380493 CGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGATAACCTGATCGGCGGCA-TAG
516 CGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTA-
* * ** * * * **
4380557 GGGTTCCGACAATCAAAGGGGTCGGGGGGTGTGTGCACATGATGTCCGATTTGTGCTGGTACTT-
580 GGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
4380621 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCACTT
644 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
4380686 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAAT
709 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
4380751 GGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAAAATAC
774 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * ** * **
4380816 AAGTATCAAGTCTACCAAGTTTGGGGTGAAAACTCCTTCCGAAAAAATTTTGAAAAATTTC
839 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
** ** *
4380877 GAGGCTTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAT
1 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
4380942 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCGACATGCAGGAAT
66 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* *** * *
4381007 ATGAAGATGTGCCTAAACCCACCTACCAGCCTATCGAGAGACGGCATGCGCATCCCGTATCTCTG
131 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * *
4381072 GCCGACATAGTGCCCGCCCGCCCTCCCGCCCGCTCGTTTCGTCGGTTGGCTTTGGCATACGGAGT
196 GCCGGCGTAGTGCCCG--C-CCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * * *
4381137 TCAGTCACAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCAGTAGCACGCAGAGA
258 TCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGG
* * * * * * * *
4381202 GAGACCCGATCGATCCCCGGCTTACGCATCAC-CCCTTCTGGCCGGCTGAGCGCCCGTACGCTCG
323 GGGACCCGACCGATCCTCGGCTTGCGCATCTCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCG
* * *
4381266 TTTCGTGGGTTGACTTAGGCATACAGAGATCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAG
388 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * *
4381331 TCTAAGATCGGACCAGACTGAGAGTTGCGGTAGCACTTGCTGGGCTCGAGCATGTGCTGGTGCCG
453 TCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * * * *
4381396 TATTTTTGTTCGCAGGGGCACCATCGCCGGAGCATCACCGAAGAACCTGACCGGTGGCATTGGGG
518 CATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTAGGG
* * * *
4381461 TTCCGACGATCGAGGGGGCCAGGGGAGTGTGCGCACATGATGTACGATGGGTGCTGGTGCTTGGC
583 TTCCGGCGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
4381526 CCTTATATTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCACCTTA
646 CC------T------TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
** *
4381591 AAGAGCATTTGAGATTTTACAGGTTTAATGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACT
699 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * *
4381656 TTTTTCAAATGATCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTTGAGCATGCCA
764 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* ** * * * *
4381721 ACAAAAATACAAGGATCACATCTACCAAGTTTCAGGTCAAAAATCCTTCTGAAAAAATTTAAAAA
829 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
4381786 AATCCC
894 AATCCC
* * *
4381792 AAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCAC
1 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
4381857 GCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATATAAATGGCATTGGCATGCAGAAAT
66 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* *
4381922 ATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTG
131 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * * **
4381987 GCTGACGTAGTGCCTG-CCTGCCCGCCCGCTCATTTCGTCAGTTGGCTTAGGCATATAGAGTTCA
196 GCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * *
4382051 TTCCCAGTCTAAGATCAAACCAGA-TCGAGGGTTGTGGCAGTAGGATCAGCAACACGTAGAGGGG
261 TTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGG
* * * * *
4382115 GACCCGACCGAT-CTCTGACTTGCGCATCTCGCCCCTCTGGCCGGCGGAGCACTCGCACGCTCGT
325 GACCCGACCGATCCTC-GGCTTGCGCATCTCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGT
*
4382179 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCGCAGTCTAAGCATACGGAGTTCATTCCCAGT
389 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * * *
4382244 CTAAGATCGGACCAGACTGAGGCTTGCAGCAGCACATGTTGGGCTCGGGCATGTGATGGTGCCGC
454 CTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * *
4382309 ATTTTTCTTCGCCGGGGCACCA----C----CA---CC-GAAAACCTGACCGACGGCATTGGGGT
519 ATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTAGGGT
* * *
4382362 TCCGTCGATCGGGGGGGCCAGGGGGGTGTGCACACATGATGTGCGATGGCTGCTGGTACTTGGCC
584 TCCGGCGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
4382427 CTTATATTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCACCTTAA
647 C------T------TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
** *
4382492 AGAGCATTTGAGATTTTACAGGTTTAATGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTT
700 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
4382557 TTTTCAAATGATCACAAAATCTTGTACACGTT-GATTTTTTCGCTGAATTTTTTTG-GCATGCCA
765 TTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * ** * *
4382620 AGAAAAATACAAGGATCACATCTACCAAGTTTCAGGCCAAAAATCCTTCTGAAAAAATTTTAAAA
829 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
4382685 AATCCC
894 AATCCC
* *
4382691 GAACCGCAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
1 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
4382756 GCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATATAAATGTCATTGGCATGCAGAAAT
66 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* *
4382821 ATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTG
131 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * ** * ** *
4382886 GCCGGTGTAGTGCCTG-CTTGCCCGCCCGCTCATTTCGTCAGTTGGCTTAGGCATATAGAGTTAA
196 GCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * *
4382950 TTCCCAGTCTAAGATCAAACCAGA-TCGAGGGTTACGGCAGCAGGATCGGCAACACGTAGAGGGG
261 TTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGG
* * * * * * * *
4383014 GACCCGACCGATCCCCGACTTACGCATCTCGCCCCTTTGGCCGGCGGAGCACTCGCACGCTCGTT
325 GACCCGACCGATCCTCGGCTTGCGCATCTCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTT
*
4383079 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCGCAGTCTAAGCATACGGAGTTCATTCCCAGTC
390 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * *
4383144 TAAGATCGGACCAGACCGAGGCTTGCAGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCA
455 TAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * *
4383209 TTTTTCTTCGCCGGGGCACCA----C----CA---CCGGAAAACCTGACAGGCGGCATTGGGGTT
520 TTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTAGGGTT
* *
4383263 CCGTCGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
585 CCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
4383328 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
650 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
*
4383393 TTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
715 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
4383458 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGTAGGCCAACAAAAATACAAGGAT
780 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* *** * *
4383523 CATGTCTACCAAGTTTGGGATAAAAACTCCTTCTGAAAAAATTTTAAACAATCCC
845 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * *
4383578 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCAC
1 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
*
4383643 GTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAACAATGGCATTGGCATGCAGAAAT
66 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * * *
4383707 ATGAAGATGTCCCCAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTTTCTG
131 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * ** * * * * *
4383772 GCCGGCATAGTGCCCG-CCCGCCCGTCTGCTTGTTTTGTTGGTTGGCTTAGCCATACAGAGATCA
196 GCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * ** * * * *
4383836 TTCCCAATCTAAGATCAGACCGGACTGTGCATTGTGGCAGCAGGATCGGCAACGCGTAGAGGGGG
261 TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGG
* * * * * * * * * *
4383901 ACAC-AGCCGATCCCCGCCTTGCGCATCCCGCCCCTCTAGCCAACTGAGCACTCACACGCTC--A
326 ACCCGA-CCGATCCTCGGCTTGCGCATCTCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTT
* * * *
4383963 TCATGGGTTGACTTAGGCATACAGAGTTCATTCGCAGTCTAAGCATACGGAGTTCCTTCCCAGTC
390 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * *
4384028 TAAGATCGGACCAGACCGAGTGTTGCGGCAGCACATGCTGGGCTTGAGCATGTGCTGGTGCCGCA
455 TAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * ** * * * *
4384093 TTTTTCTTTGCCGGGGTAGTATCACCGGAGCATCGTCGGAGAACCTGGCCGGCGGCATTGGGGTT
520 TTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTAGGGTT
* * * * *
4384158 CTGACGATCGGGGGGCC-GGGGGTGTGCGCAGATGATGTGCGATGGGTGCTGGCACTTGGCACTT
585 CCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * * *
4384222 ATACTGGCCCCCTATCCCTCATCAAACCTCAAGAACT-ACATCCCCTTAAAGAGCGTTTGAGATT
650 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
4384286 TTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTGCAAATGGTCAC
715 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
4384351 AAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCGTGCCAATAAAAATACAAGGAT
780 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * *
4384416 CATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTC
845 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
** * **
4384471 GAACCGTGAAAGGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
1 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
**
4384536 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAAT
66 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
** *
4384601 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAACTTGCACATCCCGTCTCTCTG
131 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * *
4384666 GCCGGC-AAGTGCCC-ACCTGCCCGTCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCA
196 GCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
4384729 TTCCCAGTC-----T------A-A--GA---TT--------A-GA-C--CAG-AC-C-GA--GGG
261 TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGG
* ** * * * * * *
4384760 ACTCGGTCGATCCTCGGCTTGTGCATCTCGCCCCTCTGGCTGACTGAGCACCCGCATGTTCTTTT
326 ACCCGACCGATCCTCGGCTTGCGCATCTCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTT
* *
4384825 CAG-GGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTC
391 C-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* *** * *
4384889 AAAGATCAGAATGGACCGAGGGTTGTGGCAGCACATGCCGGGCTCGGGCATGTGCTGGTGCCGCA
455 TAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * * *
4384954 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCAGAGAACTTGACCGGCGGCATTAGGGTT
520 TTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTAGGGTT
* * *
4385019 CTGGCGATCGTGGGGGCTGAGAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGC
585 CCGGCGATCG-GGGGGC--CG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * *
4385084 CCTTATATTGGCCTCCTATCCCTCATCAAACCTCAAGAACTCTCACCCCCTTAAAGAGCATTTGA
646 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
4385149 GATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGG
711 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
4385214 TCACAAAATCCTGTACACTTCGAGTTTTTACCTGAATTTTTTT-TGCATGCCAACAAAAATACAA
776 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * ** *
4385278 GGTTCACATCTACCAAGTTTGGGGGCAAAACTCCTTCC-AAAAAAGCTTAAAAAATCCT
841 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * *
4385336 GAACCGCAAAGAGTTTCAAAAATCATGAAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTCAC
1 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
4385401 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
66 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
*
4385466 ATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CCGTCTCTCTG
131 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* *
4385530 GCCGGCATAGT----GCCCCG-CCGCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCA
196 GCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * *
4385590 TTTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCAGCAGCA
261 -TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCA
4385633 CATGCTGGGC
Statistics
Matches: 8114, Mismatches: 920, Indels: 372
0.86 0.10 0.04
Matches are distributed among these distances:
839 127 0.02
840 9 0.00
841 3 0.00
843 193 0.02
844 2 0.00
845 29 0.00
846 4 0.00
847 8 0.00
848 18 0.00
849 6 0.00
850 43 0.01
855 1 0.00
857 1 0.00
859 49 0.01
861 242 0.03
862 18 0.00
863 1 0.00
864 19 0.00
865 188 0.02
866 131 0.02
867 124 0.02
868 3 0.00
869 1 0.00
870 7 0.00
871 12 0.00
873 6 0.00
874 11 0.00
875 7 0.00
876 4 0.00
879 3 0.00
881 10 0.00
882 4 0.00
883 2 0.00
884 145 0.02
885 3 0.00
886 419 0.05
887 181 0.02
888 14 0.00
889 9 0.00
890 254 0.03
891 443 0.05
892 344 0.04
893 351 0.04
894 192 0.02
895 68 0.01
896 1 0.00
898 163 0.02
899 850 0.10
900 390 0.05
901 1020 0.13
902 926 0.11
903 157 0.02
904 197 0.02
908 1 0.00
909 1 0.00
910 3 0.00
911 115 0.01
912 165 0.02
915 416 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGGCGTAGTGCCCGCCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGG
ACCCGACCGATCCTCGGCTTGCGCATCTCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
AAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
TTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTAGGGTTC
CGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
Found at i:4380412 original size:26 final size:26
Alignment explanation
Indices: 4380383--4380435 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4380373 GTTGACTTAG
4380383 GCATACGGAGTTCATTCCAAATCTAA
1 GCATACGGAGTTCATTCCAAATCTAA
* *
4380409 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCAAATCTAA
4380435 G
1 G
4380436 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAATCTAA
Found at i:4381324 original size:26 final size:26
Alignment explanation
Indices: 4381284--4381336 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4381274 GTTGACTTAG
4381284 GCATACAGAGATCATTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGTCTAA
*
4381310 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGTCTAA
4381336 G
1 G
4381337 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGATCATTCCCAGTCTAA
Found at i:4381556 original size:13 final size:12
Alignment explanation
Indices: 4381521--4381552 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
4381511 GTGCTGGTGC
*
4381521 TTGGCCCTTATA
1 TTGGCCCCTATA
4381533 TTGGCCCCTATA
1 TTGGCCCCTATA
4381545 TTGGCCCC
1 TTGGCCCC
4381553 CTATCCCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.34, G:0.19, T:0.34
Consensus pattern (12 bp):
TTGGCCCCTATA
Found at i:4382232 original size:26 final size:26
Alignment explanation
Indices: 4382196--4382248 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4382186 GTTGACTTAG
*
4382196 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4382222 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4382248 G
1 G
4382249 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4382456 original size:13 final size:12
Alignment explanation
Indices: 4382421--4382452 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
4382411 CTGCTGGTAC
*
4382421 TTGGCCCTTATA
1 TTGGCCCCTATA
4382433 TTGGCCCCTATA
1 TTGGCCCCTATA
4382445 TTGGCCCC
1 TTGGCCCC
4382453 CTATCCCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.34, G:0.19, T:0.34
Consensus pattern (12 bp):
TTGGCCCCTATA
Found at i:4383131 original size:26 final size:26
Alignment explanation
Indices: 4383095--4383147 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4383085 GTTGACTTAG
*
4383095 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4383121 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4383147 G
1 G
4383148 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4384008 original size:26 final size:26
Alignment explanation
Indices: 4383979--4384031 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4383969 GTTGACTTAG
*
4383979 GCATACAGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
4384005 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4384031 G
1 G
4384032 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4386706 original size:711 final size:707
Alignment explanation
Indices: 4384866--4387051 Score: 3206
Period size: 711 Copynumber: 3.1 Consensus size: 707
4384856 CCCAGTCTAA
* * * *
4384866 GCATACAGAGTTCATTCCCAGTCAAAGATCAGAAT-GGACCGAGGGTTGTGGCAGCACATGCCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ATCGGACCGAGGGTTGCGGCAGCACATGCTGG
* *
4384930 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-TCAGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCT-GGA
* * * * * *
4384994 GAACTTGACCGGCGGCATTAGGGTTCTGGCGATCGTGGGGGCTGAGAGGGGGTGTGCGCACATGA
129 GAACCTGACCGACGGCATTGGGGTTCCGACGAT--TGGGGGC---CAGGGGGTGTGCGCACATGA
* * *
4385059 TGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCAAGAAC
189 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
4385124 TCTCACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTT
254 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
4385189 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTACCTGAATTTT
319 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * *
4385254 TTT-TGCATGCCAACAAAAATACAAGGTTCACATCTACCAAGTTTGGGGGCAAAACTCC-TTCCA
384 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-CCTTTCGA
** * * *
4385317 AAAAAGCTTAAAAAATCCTGAACCGCAAAGAGTTTCAAAAATCATGAAAAATAGAGAACGAGTCG
448 AAAAATTTTAAAAAAT-CTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
4385382 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
512 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
4385447 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCCACGGCT
577 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCT
* *
4385512 TGCGCATCCGTCTCTCTGGCCGGCATAGTG-CC-CCGCCGCCCGCTCATTTCGTCAGTTGGCTTA
642 TGCGCATCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCGCCCGCTCATTTCGTCGGTTGGCTTA
4385575 G
707 G
* * ** *
4385576 GCATACGGAGTTCATTTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCAGCAGCACATGCTGG
1 GCATACGGAGTTCA-TTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGG
*
4385641 GCCCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCTGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCTGGAG
* * * *
4385706 AACCTGACCTACGGCATTGGGGTT-CGATGATCGGGGGTGCCAAGGGGGTGTGCACACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGAT-TGGGG-GCC-AGGGGGTGTGCGCACATGATGT
*
4385770 GCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
4385835 CACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
4385900 TGGGGACACTTTTTT-AAATGGTCACAAAATCTTGTACACTTCAATTTTTTAGCTGACTTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
4385964 GTGCATGCGAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTTCGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-CCTTTCGAAAA
* *
4386029 AATTTTAAAAAATTTGGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
451 AATTTTAAAAAATCT-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * * *
4386094 TGCCTTAAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTGCATGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
4386159 ATTGGCACATAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATCAATGGCTTGC
580 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
* *
4386224 ACATCCGGTCTCTCTGGCCGGCGTAGTGCCCGCCGGTCCG-CCGTTCATTTCGTCGGTTGGCTTA
645 GCATCC-GTCTCTCTGGCCGGCGTAGTGCCCGCC-G-CCGCCCGCTCATTTCGTCGGTTGGCTTA
4386288 G
707 G
* * **
4386289 GCATACGGGGTTCATTCCCAGTCTAAGATC-GATCGGATCGAGGGTCACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** *
4386353 CTCGGGCATGTGCTGGTGCCTTATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCTGGAGA
4386418 ACCTGACCGACGGCATTGGGGTTCCGACGATTAGGGGGCCAGGGGGTGTGCGCACATGATGTGCG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGCCAGGGGGTGTGCGCACATGATGTGCG
*
4386483 ATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
4386548 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
4386613 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
4386678 CATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCCAAAACCCTTTCGAAAAAAT
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CCAAAACCCTTTCGAAAAAAT
** * * * *
4386743 TTTAAAAAATCTCGAACCATAAAAGGGTTCCAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGC
454 TTTAAAAAATCT-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
4386808 CATGAAACTTCAGGTGAAGGCTTAAGGGACGATTGTATGAATTTACAAGCCATAAAAATGGCATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
4386873 GGCATGCAGAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCCATGGCTTGCGCA
583 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCA
* * * *
4386938 TCCCATCTCTCTGGCCGACGTAGTGCCGCCTGCCCGCTCGCCCGCTCGTTTCGTTGGTTGGCTTA
648 T-CCGTCTCTCTGGCCGGCGTAGTG-C-CC-G-CCGC-CGCCCGCTCATTTCGTCGGTTGGCTTA
4387003 G
707 G
* * * *
4387004 GCATATGGAGTTCATTCCCAGTCTACGATCGGA-CTGGACCGAAGGTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTG
4387052 TGGTAGCAAG
Statistics
Matches: 1321, Mismatches: 129, Indels: 46
0.88 0.09 0.03
Matches are distributed among these distances:
707 44 0.03
708 206 0.16
709 192 0.15
710 200 0.15
711 530 0.40
712 39 0.03
713 40 0.03
714 7 0.01
715 52 0.04
716 11 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (707 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCTGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGCCAGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCTTTCGAAAAAATTT
TAAAAAATCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCC
GTCTCTCTGGCCGGCGTAGTGCCCGCCGCCGCCCGCTCATTTCGTCGGTTGGCTTAG
Found at i:4388225 original size:26 final size:26
Alignment explanation
Indices: 4388181--4388232 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
4388171 AAAACTCCTT
* *
4388181 CCGAAAAAATTTTAAAAAATCTTGAA
1 CCGAAAAAAGTTTAAAAAATCATGAA
**
4388207 CCGAAAAAAGTTTCGAAAATCATGAA
1 CCGAAAAAAGTTTAAAAAATCATGAA
4388233 AAATAGAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.52, C:0.13, G:0.12, T:0.23
Consensus pattern (26 bp):
CCGAAAAAAGTTTAAAAAATCATGAA
Found at i:4388472 original size:26 final size:26
Alignment explanation
Indices: 4388441--4388493 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4388431 GTTGACTTAG
4388441 GCATACAAAGTTCATTCCCAATCTAA
1 GCATACAAAGTTCATTCCCAATCTAA
** *
4388467 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAATCTAA
4388493 G
1 G
4388494 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAATCTAA
Found at i:4389077 original size:26 final size:26
Alignment explanation
Indices: 4389041--4389093 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4389031 GTTGACTTAG
4389041 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
4389067 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4389093 G
1 G
4389094 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4389973 original size:26 final size:26
Alignment explanation
Indices: 4389937--4389989 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4389927 GTTGACTTAG
4389937 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4389963 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4389989 G
1 G
4389990 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4390866 original size:26 final size:26
Alignment explanation
Indices: 4390837--4390889 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4390827 GTTGACTTAG
* *
4390837 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTAATTCCCAGTCTAA
4390863 GCATACGAAGTTAATTCCCAGTCTAA
1 GCATACGAAGTTAATTCCCAGTCTAA
4390889 G
1 G
4390890 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTAATTCCCAGTCTAA
Found at i:4391791 original size:26 final size:26
Alignment explanation
Indices: 4391741--4391792 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
4391731 GTTTGCTTAG
*
4391741 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
4391767 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
4391793 CATCAGATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:4391914 original size:904 final size:901
Alignment explanation
Indices: 4388640--4396005 Score: 9967
Period size: 900 Copynumber: 8.2 Consensus size: 901
4388630 CTCCTTCCAG
* * * * *
4388640 AAAAAGATTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTGCACGTGAATG
1 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
4388705 CTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * * **
4388770 TGTACCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCACATCCTGTCTCTCTGGCCAACG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * * *
4388835 TAGTGCCCACCCACCCGCTCGCACGCTCGTTTCGTCGGTTGGCTTAGGCATACCGAGTTCATTCC
196 TAGTGCCCGCCCGCCCGCCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * * * * *
4388900 CAATCTAAGATCGGACCAAACCGAGGGTCGTGGCTA-CAGGATCGACAGCATGCAAAGGGGGTCC
260 CAGTCTAAGATCAGACCGAACCGAGGGTTGTGGC-AGCAGGATCGGCAGCACGTAGAGGGGGACC
** * * * * * **
4388964 CGACCGATCCCCGACTTGCGAATTCTGCCCCTCTGGCCGGCTGAGCGCTTGCACGCTCGTTTCGT
324 CGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGT
*
4389029 GGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
389 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * *
4389094 ATCAGACCGGACCGCAA--GTTGCGGCAGCACATGCTGGGCTCGAGCAAGTGCTGGTGCCACATT
454 ATCAGACCGGA---CAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * *
4389157 TTTCTTCGTCGGGGCACCATCGCCAGAGAATCATCGGAGAACCTGACCGACGGCATTTGGGTTCC
516 TTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC
* * *
4389222 GACGATCGGGGAGGCC---GGGGTGTGCACACATGATGTGCGATGGCTGCTGATACTTGGCCCTT
581 GACGATCGGGG-GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* *
4389284 ATACTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTGAGATT
645 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
*
4389349 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCAC
710 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
**
4389414 AAAATCTTGTACACTTATAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
775 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
* * * ** *
4389479 CACCTCTACCAAGTTTGGGGACAAAACTCCATCCGAAAAAATTTTAAAAAATCCCGAACCGC
840 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCCCGAACCGT
* * * * * *
4389541 AAAAATTTTCAAAAATCATTAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAATG
1 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * * ***
4389606 CTTAGGGGACCATGGTATGAATTTACAAGCCATAAAAATAGCATTGGCACATAGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * *
4389671 TGTGCCTAAACCCACCTACCACCCTATCGGTCCACGGCTTGCGCATCTCGTCTCCCTGGCCGGCG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * *
4389736 TAGTGCCCGCCTGCCCG--C-CCGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
196 TAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * **
4389798 AGTCTAAGATCGGACC-AGACCGAGGGTTGCGGCAGCAGGAT-GGCAGCACACAGAGGGGGACCC
261 AGTCTAAGATCAGACCGA-ACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCC
* ** * ** * *
4389861 GATCGATCCCCTTCTTGCGCATCCTGCCCCTCTGGCCGATTGAGCACCCGCACGTTCATTTCGTG
325 GGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTG
4389926 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
390 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * **
4389991 TCGGACCGGACTGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGGGTTGGTGCCATATTTTT
455 TCAGACCGGAC-AAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* ** *
4390056 CTTCGTCGGGGCACCATCGCCAGAGCATCATCAAAAAACCTGACCGGCGGCATTGGGGTTCCGAC
519 CTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
* *
4390121 AATCGGGGGGACCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATA
584 GATCGGGGGG-CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
4390186 TTGGCCCCCTATCCCTCATCAAACCTCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
648 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
4390251 CAGGTTTGCTGCCAGTACCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
713 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
4390316 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
778 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
* * * * *
4390381 ATCTACCAAGTTTGGGG-CAAAAATGCCTTTTGAAAAAATTTTAAAAAGTCCCGAACCGT
843 GTCTACCAAGTTTGGGGCCAAAACT-CCTTCTAAAAAAATTTTAAAAAATCCCGAACCGT
* *
4390440 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAATG
1 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * * **
4390505 CTTAGGGGAACATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCACACAGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* *
4390570 TGTGCCTAAACCCACCTACCACCCTATCGAACCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * *
4390635 TAGTGCCCGCCCACCCG---TCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
196 TAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* *
4390697 AGTCTAAGATCAGACCGGACCGAGGGTTGTGGCATCAGGATCGGCAGCACGTAGAGGGGGACCCG
261 AGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCG
* ** * *
4390762 GTTGATCCCTAGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCACCCGTACGCTCGTTTCGTGG
326 GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGG
* *
4390827 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTAATTCCCAGTCTAAGAT
391 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
** * * * * *
4390892 TGGATCGGACCAAGGGTTTCGGCAGCACATGCTGGGCTCGGGTATGTGTTGGTGCCGCATTTATC
456 CAGACCGGA-CAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * *
4390957 TTCGTTGGGGCACCATCGTCAGATG-ATCATCGGAGAACCTGACCGGTGGCATTGGGGTTCCGAC
520 TTCGTCGGGGCACCATCGCCAGA-GCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
** *
4391021 GATCGGGGGGCCCGGGGGGGTGTGCGCACATGATGTGCGATATGTGCTGGTACTTGGCCGTTATA
584 GATCGGGGGG-CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
4391086 TTGGCCCCGTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
648 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
4391151 CAGG-TTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA-GGCTCACAA
713 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG-TCACAA
* * *
4391214 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCTTGCCAACAAAAATACAAGGATCA
777 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
** * * **
4391279 CGTCTACCAAGTTACGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCTCGAATCAC
842 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCCCGAACCGT
* * * *
4391339 AAAAAGTTTCAAAAATCGTGAAAAATAAAAAAATGAGTCGTCTTGCCATGAAACTCCATGTGAAG
1 AAAAAGTTTCAAAAATCGTGAAAAAT-AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * ** *
4391404 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGAACACAAAAATATGAAG
65 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * *
4391469 ATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGCGCATCTCGTCTCTCTGGTCGGC
130 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
*
4391534 GTAGTGCCCGCCCGCCCGCCCGCACGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTC
195 GTAGTGCCCGCCCGCCCGCCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* ** * *
4391599 CCAGTCTAAGATTAGACCGAACAAAGGGTTGTGGCAGCAGGATCGGTAGCTCGTAGAGGGGGACC
259 CCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACC
* * * * *
4391664 CGGTCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCACCCGTACCCTCGTTTTGT
324 CGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGT
* * *
4391729 GGGTTTG-CTTAGGCATACGGAGTTCATTCCTAATCTAAGCATATGGAGTTCATTCCCAGTCTAA
389 GGG-TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
4391793 CATCAGATCGGATCAAGGGTTGCGGTAGCACATGCTGGGCTCAGGCATGTGTTGGTGCCGCATTT
453 GATCAGACCGGA-CAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * **
4391858 TTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGATCGGTGGCATTGGGGTTTTG
517 TTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
* * *
4391923 ACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGCACTTGGCCCTTA
582 ACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
4391988 TATTGGCCCCATATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
646 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * *
4392053 TATAGGTTTGCTTCAAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
711 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
4392118 AAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAAAAAAAATACAAGGATC
776 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
* * * *
4392183 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAAAAAAAATTCTAAAAAAT-CTGAAACCGC
841 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCCCG-AACCGT
*
4392244 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGG
1 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
4392309 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCATGCAGAAATATGAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * *
4392374 TGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCGTCCCGTCTCTCTGGCCGGCG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * * *
4392439 TAGTGCCCGCCCGCCCG--C-CCACTCGTTTCGTCGGTTGGCTTAGACATACAGTGTTCATTCCC
196 TAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * * * ** * * *
4392501 AATCTAAGATCAGACCAAACCAAGGGTTGCGGCAGTAAGATCGGTAGCACAAAGAGGAGTACCCA
261 AGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCG
* * ** * * * ** * *
4392566 GCCGATCCCCGGCTTGTGCATCTTGCCCCTTTGGCCAGTTGAGCATGCACACGCTCGTTTCGTTG
326 GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGG
* * *
4392631 GTTGACTTAGGGATACGGTGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGAT
391 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
** * * * * * *
4392696 TGGACCGGACCAAGGGTTGCCGCAGCACATCCTGGGCTCGGGCTTGTGTTCGTGCCGTATTTTTC
456 CAGACCGGA-CAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * *
4392761 ATCGCCAGGGCACCATTGCCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
520 TTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
*
4392826 ATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATAT
585 ATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
4392891 TGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATGTGAGATTTTAT
649 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * *
4392956 ACGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGATCACAAAA
714 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * * * *
4393021 TCTTGTACACTTCGAGTTTTTCGCTGAATTGTTTTGTGCATGGCAACAAAAATACAAGGATAATG
779 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
** * * * * *
4393086 TCTACCAAGTTTGAAGCAAAAACTCCTTCTGAAAACATTTTAAGAAATCCCGCACCGT
844 TCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCCCGAACCGT
* *
4393144 AAAAAGTTTCAAAAATCATGACAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
4393209 CTTAAGGGACCATTGTATGAATTTA-AATGCCATAAAAATGGCATTGGCTTGCAGATATATGAAG
66 CTTAAGGGACCATTGTATGAATTTACAA-GCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * *
4393273 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTTGTGCATCCCATCTCTATGGCCGGC
130 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * * **
4393338 GTAGTGCCCGCCTGCCCGCCCACCCGTTCATTTTATCGGTTGGCTTAGGCATACGGAGTTCATTC
195 GTAGTGCCCGCCCGCCCGCCC-GCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
*** * * *
4393403 CCAGTCTAAGATCAGGGTGGACTGAGGGTTGTGGCAGCAGGATCGGTAGCACGTAGAGGGGGACC
259 CCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACC
* * * * *
4393468 CGGTCGATCCCCGACTT-CTGCATCCCACCCCTCTAGCCGACTGAGCACCCGCACGCCCGTTTCG
324 CGGTCGATCCCCGGCTTGC-GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCG
* * *
4393532 TGGGTTGACTTAGGCATACTGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAG
388 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
4393597 GATCAGACTGGACTGAGGGTTGTGGTAGCACATGCTAGGCTCAGGCATGTCCTGGTGCCGCATTT
453 GATCAGACCGGAC-AAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * * *
4393662 TTCTTCGTCAGGGCACCATCGTC-GTAGCATCGCCGGAGAACCTGATCGTCGGCATTAGGGTTCC
517 TTCTTCGTCGGGGCACCATCGCCAG-AGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC
*
4393726 GACGATGGGGGGGCCGGGGGGG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
581 GACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
*
4393790 TATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
646 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * * *
4393855 TATAGGTTTGCTGTCAGTAGCCATTAAGGTGTCTGAAATGGGGACACTTTTTTAAAATGGTCACA
711 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * *
4393920 AAATCTTGTACACTTTGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAGGGATC
776 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
* * * * * * * * **
4393985 ATGTTTACCCAGTTTTGGGCCAAAACT-CTTTTCGAAAAAATTTTAAAAAATCCTGAAGCAA
841 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-AAAAAAATTTTAAAAAATCCCGAACCGT
* * *
4394046 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAATCTTCATGTGAAGG
1 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
4394111 CTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCATGCAGAAATATAAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* *
4394176 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGTG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* ** * * * *
4394241 TAGTGCTCATCCGTCCGCCCGCCTGCTCTTTTCGTCGGTTGGCTTAGGCATACAGAGTTAATTCC
196 TAGTGCCCGCCCGCCCGCCCGCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* **** *
4394306 CAGTCTAAGATCAGACC-AGATCGAGGGTTGCAATAGCAAGATCGGCAGCACGTAGAGGGGGACC
260 CAGTCTAAGATCAGACCGA-ACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACC
*** * * * *
4394370 CAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGCCCGGTTGAGCGCCCACACGCTCGTTTCGT
324 CGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGT
* *
4394435 GGGTTGACTTAGGCATATGGAGTTTATTCCCAGTCTAAG-AT-C---G---------AG-C----
389 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* **
4394481 --CAGA-C---CAAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTACATTTTT
454 ATCAGACCGGACAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
** * * * * *
4394540 CTTCACCGGGGCACCATCACC-GAAGCATCGTCGGAGAACCTGACCGACGGCATCGGGGTTTCGG
519 CTTCGTCGGGGCACCATCGCCAG-AGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA
* *
4394604 CGATCAGTGTGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
583 CGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * ** *
4394669 ATTGGCCCCTTATCCCTCATGAAACCTTTAGAACTCACACCCCATTAAAGAGCATTTGAGATTTT
647 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
4394734 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTATTCAAATGGTCACAA
712 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
4394799 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAATAAAATACAAGGATCG
777 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
* * * *
4394864 CGTCTACCAAGTTTGGGGCCAAAACTCGTTCCAAAAAAATTTAAAAAAATCCTGAACCGT
842 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCCCGAACCGT
*
4394924 AAAATGTTTCAAAAATCGTGAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
1 AAAAAGTTTCAAAAATCGTG-AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
4394989 GCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
65 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * *
4395054 ATGTGACTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCTCGTCTCTCTGGCCGGC
130 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * * * *
4395119 ATAGTGCCCGCCCGTCCGCCCGCCTGCTCATTTCGTTGTTTGGCTTAGGCATACGGAGTTCACTC
195 GTAGTGCCCGCCCGCCCGCCCGCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* ** * * * * *
4395184 CAAGTCTAAGATTGGATC-ACACCGAGGGTTATGGCAGCAGGTTTGGCAGCACGCAGAGGGGGAC
259 CCAGTCTAAGATCAGACCGA-ACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGAC
* * * * *
4395248 TCGG-CTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGTGCGCCCGCAAGCTCATTTC
323 CCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTC
* * *
4395312 GTGGGTTAACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTA
387 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * *
4395377 AGATCAGATCGGATTGAA-GGTTGCGGCAGCACATGCTAGGG-TCGGGCATGGGCTGGTGCCGTA
452 AGATCAGACCGGA--CAAGGGTTGCGGCAGCACATGCT-GGGCTCGGGCATGTGCTGGTGCCGCA
* * **
4395440 TTTTTCTTCGTCGAGGCACCATCACTGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
514 TTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
*
4395505 CCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
579 CCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* * *
4395570 TATATTGGCCACCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGAT
644 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * *
4395635 TTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTTAAATGGGGACACATTTTTCAAATGGTCA
709 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
4395700 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATGCAAGGA
774 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGA
* * *
4395765 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTTAAAAAATCTCGAGCCGT
839 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAA-TTTTAAAAAATCCCGAACCGT
* * *
4395829 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTAACGTGAAAG
1 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
4395894 CTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCGGAAATATAAAGA
66 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* *
4395959 TGT-CCTAAACCCACCTACCACCCTACCGATCC-CGGATTGCGCATCCC
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
4396006 ACCCCTCTGG
Statistics
Matches: 5730, Mismatches: 657, Indels: 155
0.88 0.10 0.02
Matches are distributed among these distances:
876 101 0.02
877 14 0.00
878 285 0.05
879 360 0.06
880 2 0.00
881 5 0.00
884 1 0.00
887 1 0.00
888 2 0.00
893 3 0.00
894 2 0.00
895 2 0.00
896 256 0.04
897 75 0.01
898 9 0.00
899 742 0.13
900 1341 0.23
901 202 0.04
902 643 0.11
903 49 0.01
904 1291 0.23
905 336 0.06
906 8 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
TAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCG
GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGG
GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
CAGACCGGACAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
TCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
TCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC
TACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCCCGAACCGT
Found at i:4392679 original size:26 final size:26
Alignment explanation
Indices: 4392643--4392693 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4392633 TGACTTAGGG
*
4392643 ATACGGTGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
*
4392669 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
4392694 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:4393581 original size:26 final size:26
Alignment explanation
Indices: 4393545--4393595 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4393535 GTTGACTTAG
* *
4393545 GCATACTGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4393571 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
4393596 GGATCAGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4395362 original size:26 final size:26
Alignment explanation
Indices: 4395326--4395378 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4395316 GTTAACTTAG
* *
4395326 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4395352 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4395378 G
1 G
4395379 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4396666 original size:732 final size:732
Alignment explanation
Indices: 4395258--4396739 Score: 2231
Period size: 732 Copynumber: 2.0 Consensus size: 732
4395248 TCGGCTGATC
* * * * *
4395258 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGTGCGCCCGCAAGCTCATTTCGTGGGTTAACT
1 CCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCACCCGCAAGCTCATTTCGTGGCTTAACT
* * * *
4395323 TAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCG
66 TAGGCATACGGAGTTCATTCCCAGTCTAAGCAGACAGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * *
4395388 GATTGAAGGTTGCGGCAGCACATGCTAGGGTCGGGCATGGGCTGGTGCCGTATTTTTCTTCGTCG
131 GATCGAAGGTTGCAGCAGCACATGCTAGGGTCGGGCATCGGCTGGTGCCGTATTTTTCTTCATCG
** * * *
4395453 AGGCACCATCACTGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGG
196 AGGCACCATCACTGGAGCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCGGCAATCGGGG
*
4395518 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACC
261 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCACC
*
4395583 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGC
326 TATCCCGCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGC
* *
4395648 TGCTAGTAGCCATTAAAGTGTCTTAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTAC
391 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTAC
* *
4395713 ACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATGCAAGGATCACGTCTACCAA
456 ACTTCGAGTTTTAAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * *
4395778 GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTTAAAAAATCTCGAGCCGTAAAAAGTTTCAAAA
521 GTTTGGAGCCAAAACTCCTTCCAAAAAAATTTTTAAAAAATCTCGAACCGTAAAAACTTTCAAAA
* * *
4395843 ATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTAACGTGAAAGCTTAAGGGACCACT
586 ATCGTGAAAAATAGAAAACGAGTCGTCCTGCCATGAAAATTAACGTGAAAGCTTAAGGGACCACT
* *
4395908 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCGGAAATATAAAGATGT-CCTAAACCCA
651 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCA
4395972 CCTACCACCCTACCGAT
716 CCTACCACCCTACCGAT
* * * *
4395989 CCCGGATTGCGCATCCCACCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGCTTGACT
1 CCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCACCCGCAAGCTCATTTCGTGGCTTAACT
*
4396054 TAGGCATACGGAGTTCATTCCCAGTCTAAGCAGACGGAGTTCATTCCCAGTCTAAGATCAGACCA
66 TAGGCATACGGAGTTCATTCCCAGTCTAAGCAGACAGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * *
4396119 GATCGAGGGTTGCAGTAGCACATGCT-GGGCTCGGGCATCTGTTGGTGTCGTATTTTTCTTCATC
131 GATCGAAGGTTGCAGCAGCACATGCTAGGG-TCGGGCATCGGCTGGTGCCGTATTTTTCTTCATC
* * * * * *
4396183 GGGGCACCGTC-GTCGGAGCATCACCGAAGATCCTGACCGACGGCATTGGGGTTCTGGTAATCGG
195 GAGGCACCATCACT-GGAGCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCGGCAATCGG
*
4396247 GGTGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTTTATTGGCC
259 GG-GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCC
** *
4396312 -CTCTATCCCGCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
323 AC-CTATCCCGCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGT
*
4396376 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTCACAAAATCT
387 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGG-TCACAAAATCT
* * *
4396441 TGTACACTTTGAGTTTTAAGCTGAATCT-TTTTGTGCATGCCAACAAAAATACAAGGATCATGTC
451 TGTACACTTCGAGTTTTAAGCTGAAT-TGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC
* *
4396505 TACCAAGTTTGGAGCCAAAACTCCTTCCGAAAAAA-TTTTAAAACATCTCGAACCGTAAAAACTT
515 TACCAAGTTTGGAGCCAAAACTCCTTCCAAAAAAATTTTTAAAAAATCTCGAACCGTAAAAACTT
* * * * *
4396569 TTAAAAATTGTGAAAAATAGAAAACGAGTCGTCCTGGCATGAAAATTCACGTGAAGGCTTAAGGG
580 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCCTGCCATGAAAATTAACGTGAAAGCTTAAGGG
* * *
4396634 ACCATTGTATGAATTTA-AATGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCT
645 ACCACTGTATGAATTTACAA-GCCATAAAAATGGCATTGGCACGCAGAAATATAAAGATGTGCCT
*
4396698 AAACCCACCTACCACCCTATCGAT
709 AAACCCACCTACCACCCTACCGAT
*
4396722 CCACGGCTTACGCATCCC
1 CC-CGGCTTGCGCATCCC
4396740 GTCTCTCTGG
Statistics
Matches: 673, Mismatches: 69, Indels: 15
0.89 0.09 0.02
Matches are distributed among these distances:
730 4 0.01
731 223 0.33
732 303 0.45
733 129 0.19
734 14 0.02
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (732 bp):
CCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCACCCGCAAGCTCATTTCGTGGCTTAACT
TAGGCATACGGAGTTCATTCCCAGTCTAAGCAGACAGAGTTCATTCCCAGTCTAAGATCAGACCA
GATCGAAGGTTGCAGCAGCACATGCTAGGGTCGGGCATCGGCTGGTGCCGTATTTTTCTTCATCG
AGGCACCATCACTGGAGCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCGGCAATCGGGG
GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCACC
TATCCCGCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGC
TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTAC
ACTTCGAGTTTTAAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
GTTTGGAGCCAAAACTCCTTCCAAAAAAATTTTTAAAAAATCTCGAACCGTAAAAACTTTCAAAA
ATCGTGAAAAATAGAAAACGAGTCGTCCTGCCATGAAAATTAACGTGAAAGCTTAAGGGACCACT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCA
CCTACCACCCTACCGAT
Found at i:4398219 original size:898 final size:890
Alignment explanation
Indices: 4395984--4398626 Score: 3653
Period size: 898 Copynumber: 3.0 Consensus size: 890
4395974 TACCACCCTA
* * *
4395984 CCGATCC-CGGATTGCGCATCCCACCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGC
1 CCGATCCTCGGCTTGCGCATTCC-CCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGG
*
4396048 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAGACGGAGTTCATTCCCAGTCTAAGATC
65 TTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCAGACGGAGTTCATTCCCAGTCTAAGATC
* * *
4396113 AGACCAGATCGAGGGTTGCAGTAGCACATGCTGGGCTCGGGCATCTGTTGGTGTCGTATTTTTCT
130 AGACTAGATCGAGGGTTGCAGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCGCATTTTTCT
* * *
4396178 TCATCGGGGCACCGTCGTCGGAGCATCACCGAAGATCCTGACCGACGGCATTGGGGTTCTGGTAA
195 TCGTCGGGGCACCATCGTCGGAGCATCACCGAA-ATCCTGACCGGCGGCATTGGGGTTCTGGTAA
* * *
4396243 TCGGGGTGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTTTATT
259 TCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
4396308 GGCCCTCTATCCCGCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
323 GGCCCCCTATCCCACATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
4396373 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTCACAAAA
388 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAAGGGGACACTTTTTTCAAATGGTT-ACAAAA
* * *
4396438 TCTTGTACACTTTGAGTTTTAAGCTGAATCTTTTTGTGCATGCCAACAAAAATACAAGGATCATG
452 TCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * * *
4396503 TCTACCAAGTTTGGAGCCAAAACTCCTTCCGAAAAAATTTTAAAACATCTCGAACCGTAAAAACT
517 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGT
** * * * *
4396568 TTTAAAAATTGTGAAAAATAGAAAACGAGTCGTCCTGGCATGAAAATTCACGTGAAGGCTTAAGG
582 TTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAGG
**
4396633 GACCATTGTATGAATTTA-AATGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCC
647 GACCATTGTATGAATTTACAA-GCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCC
* * * ** *
4396697 TAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGTCGGTGCAGTGC
711 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGACGTAGTGC
* * * * *
4396762 CCGCCTGCCCACCCGCCTGGTTGTTTCGTCAGG-TGGCTTAGGCATACGAAGTTTATTCCCCA-T
776 CCGCCCG-CC-CGC-CCT-CTTGTTTCGTC-GGTTGGCTTAGGCATACGGAGTTCATT-CCCAGT
* ** ** **
4396825 CTAAGATCAGACCAGACCGAGGCTTGTGGTAGCAGGATCAGTAGCACGTAGAGGGG
835 CTAAGATCAGAACAGACCGAGGCTTGCAGTAGCAGGATCAACAGCACACAGAGGGG
* * * *
4396881 --GA-CCT-GGC---CG-A-T--CCCCTCTGGCCGGCTGAGTACCCGTACGCTCGTTTCGTAGGT
1 CCGATCCTCGGCTTGCGCATTCCCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGT
*
4396935 TGACTTCGGCATACGGAGTTCATTCCTAGTCTAAGCAGACGGAGTTCATTCCCAGTCTAAGATCA
66 TGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCAGACGGAGTTCATTCCCAGTCTAAGATCA
* *
4397000 GA-TCAGATCGAGGG-TGCGGTAGCACATGCTGGGCTCGGGCATGTCTTGGTGTCGCATTTTTCT
131 GACT-AGATCGAGGGTTGCAGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCGCATTTTTCT
* * *
4397063 TCGTCGGGGCACCATCGTCGGAGTATCACCGGAGATCCTGACCGGCGGCATTGGGGTTCCGGTAA
195 TCGTCGGGGCACCATCGTCGGAGCATCACC-GAAATCCTGACCGGCGGCATTGGGGTTCTGGTAA
*
4397128 TC-GGGGGCCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
259 TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
4397192 GCCCCCTATCCCACATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAG
324 GCCCCCTATCCCACATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* **
4397257 GTTTGCTGCCAGTAGGCATTAAAGTGTC-TAAAATGGGGACACTTTTTTCAAATGGTCGCAAAAT
389 GTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAA-GGGGACACTTTTTTCAAATGGTTACAAAAT
*
4397321 CTTGTACACTATGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAGTAC-AGGCATCAC
453 CTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGG-ATCAC
* * * *
4397384 ATCTGCCAAGTTTGGGGCCAAAACTCCTACCGAAAAAATTTTAAAAAATCTCGAACCTTAAAAAG
516 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAG
* * *
4397449 TTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCATGTGAAGGCTTAAG
581 TTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAG
* *
4397514 AGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCGGCACACAGAAATATGAAGATGTGCC
646 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCC
* * * *
4397579 TAAACCCACCTACCACCCAATCAATCCACGACTTGCGCATCCCGTCTTTCTGGCCAACGTAGTGC
711 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGACGTAGTGC
* * *
4397644 CCGCCCGCCTGCCCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGA
776 CCGCCCGCCCGCCCTCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * *
4397709 TCAGAATAGACTGAGGGTTGCAGTAGTAGGATCAACAGCACACAGAGGGGGACCCGG
841 TCAGAACAGACCGAGGCTTGCAGTAGCAGGATCAACAGCACACAGA---GG----GG
4397766 CCGATCCTCGGCTTGCGCATTCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGG
1 CCGATCCTCGGCTTGCGCATTCC-CCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGG
* * *
4397831 TTGACTTAGGCATAAGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCAATT-CCAGTCTAAGAT
65 TTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCAGACGGAGTTC-ATTCCCAGTCTAAGAT
** * * * * * * *
4397895 TGGACTGGA-CTAAGGGTTACAGTGGCACATGCTGGACTCGGGCATGTGTTGCTGCCGCATTTTT
129 CAGACTAGATC-GAGGGTTGCAGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCGCATTTTT
** ** ** * * * *
4397959 CTTCGTTAGGGCACCATCACCGGAGCATCGTCGTAAAACCTAACCGGCGGCATTAGGGTTCTGGC
193 CTTCGTCGGGGCACCATCGTCGGAGCATCACCG-AAATCCTGACCGGCGGCATTGGGGTTCTGGT
* *
4398024 GATCGGGGGGGCC-GGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
257 AATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
4398088 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
322 TGGCCCCCTATCCCACATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
4398153 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAAGGGGACACTTTTTTCAAATGGTTACAAAA
387 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAAGGGGACACTTTTTTCAAATGGTTACAAAA
*
4398218 TCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCTCG
452 TCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * *
4398283 TCTACCAAGTTTGGGGCCAAAATTCCTTTCC-AAAAAATTTTAAAAAATCCCGAACCACAAAAAG
517 TCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAG
*
4398347 TTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAG
581 TTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAG
*
4398412 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGACAGAAATATGAAGATGTGCC
646 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCC
* * * * *
4398477 TAAACCCACTTACCACCCTATTGATCCACGGCTTGCGCATCTCGTCTTTCTAGCCGACATAGTGC
711 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGACGTAGTG-
* * *
4398542 CCGTCCGCCCGCCCGCCCGCTTGTTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
775 -C--CCGCCCGCCCGCCCTCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * *
4398607 AAGATCGGACCGGACCGAGG
837 AAGATCAGAACAGACCGAGG
4398627 GTTACGGCAG
Statistics
Matches: 1541, Mismatches: 163, Indels: 79
0.86 0.09 0.04
Matches are distributed among these distances:
877 5 0.00
878 73 0.05
879 3 0.00
880 1 0.00
881 12 0.01
882 292 0.19
883 163 0.11
884 6 0.00
885 105 0.07
886 114 0.07
887 2 0.00
888 3 0.00
889 3 0.00
890 1 0.00
891 2 0.00
892 2 0.00
893 1 0.00
894 5 0.00
895 2 0.00
896 1 0.00
897 102 0.07
898 549 0.36
899 23 0.01
900 1 0.00
902 70 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (890 bp):
CCGATCCTCGGCTTGCGCATTCCCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCAGACGGAGTTCATTCCCAGTCTAAGATCA
GACTAGATCGAGGGTTGCAGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCGCATTTTTCTT
CGTCGGGGCACCATCGTCGGAGCATCACCGAAATCCTGACCGGCGGCATTGGGGTTCTGGTAATC
GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCACATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTTAAAAGGGGACACTTTTTTCAAATGGTTACAAAATCTT
GTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTTA
AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGACGTAGTGCCCGCC
CGCCCGCCCTCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
ACAGACCGAGGCTTGCAGTAGCAGGATCAACAGCACACAGAGGGG
Found at i:4398927 original size:719 final size:716
Alignment explanation
Indices: 4397866--4399261 Score: 2116
Period size: 719 Copynumber: 1.9 Consensus size: 716
4397856 CCTAGTCTAA
* * * **
4397866 GCATACAGAGTTCAATTCCAGTCTAAGATTGGACTGGACTAAGGGTTACAGTGGCACATGCTGGA
1 GCATACAGAGTTCAATTCCAGTCTAAGATCGGACCGGACCAAGGGTTACAGCAGCACATGCTGGA
* * * * *
4397931 CTCGGGCATGTGTTGCTGCCGCATTTTTCTTCGTTAGGGCACCATCACCGGAGCATCGTCGTAAA
66 CTCGGGCATGTGTTGCTGCAGCATTTTTCTTCGTCAGGGCACCATCACCGAAGCATCGCCGGAAA
* * * * *
4397996 ACCTAACCGGCGGCATTAGGGTTCTGGCGATCGGGGGGGCCGGGGGTGTGCACACATGATGTGCG
131 ACCTAACCGGCGGCATTAGGGTTCCGACGATCGGGCGAGCCGGGGGTGTGCACACATGATGTGCA
* * *
4398061 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCCAGAACTCACAC
* * *
4398126 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAAGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTCTCTGAAAAGG
* *
4398191 GGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
4398256 CATGCCAACAAAAATACAAGGATCTCGTCTACCAAGTTTGGGGCCAAAATTCCTTTCCAAAAAAT
391 CACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAGTCC-TT-CAAAAAAT
**
4398321 -TTTAAAAAA-TCCCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
453 ATTTAAAAAAGTCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
4398384 GCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* **
4398449 TTGGCA-GACAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATTGATCCACGGCTTGC
583 TTGGCATG-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGCTTGC
* *
4398513 GCATCTCGTCTTTCTAGCCGACATAGTGCCCGTCCGCCCGCCCGCCCGCTTGTTTTGTCAGTTGG
647 GCATCCCGTCTCTCTAGCCGACATAGTGCCCGTCCGCCCGCCCGCCCGCTTGTTTTGTCAGTTGG
4398578 CTTAG
712 CTTAG
* * *
4398583 GCATACGGAGTTC-ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGG
1 GCATACAGAGTTCAATT-CCAGTCTAAGATCGGACCGGACCAAGGGTTACAGCAGCACATGCTGG
* * * * *
4398647 GCTTGGGCATGTGTTGGTGCAGCATTTTTCTTCGTCAGGGCACCATCGCCGAAGCATCGCCGGAG
65 ACTCGGGCATGTGTTGCTGCAGCATTTTTCTTCGTCAGGGCACCATCACCGAAGCATCGCCGGAA
* * * * *
4398712 AACCTGACCGGCGGCCTTGGGGTTCCGATGATCGGGCGAGCCAGGGGGGTGTGCGCACATGATGT
130 AACCTAACCGGCGGCATTAGGGTTCCGACGATCGGGCGAGCC--GGGGGTGTGCACACATGATGT
* * *
4398777 GCAATGGGTGCTGGTAGTTAGCCCTTATATTGGCCCGCTATCCCTCACCGAACCTCCAGAACTCA
193 GCAATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCCAGAACTCA
*
4398842 CACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTCTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTCTCTGAAA
* *
4398907 TGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 AGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
**
4398972 GTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAGTCCTTCTGAAAAT
388 GTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAGTCCTTCAAAAAAT
* ** *
4399037 ATTTAAAAAAGTCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTT
453 ATTTAAAAAAGTCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * **
4399102 GCCATGAAACTTCACGTGAAGGCTTACGGGACCATTGTATGAATTTACAAGCCATAAATTTGGCA
518 GCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
4399167 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGCTTGCG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGCTTGCG
* * *
4399232 CATCCCGTCTCTCTGGTCGACGTAGTGCCC
648 CATCCCGTCTCTCTAGCCGACATAGTGCCC
4399262 ACTTGCTCGT
Statistics
Matches: 608, Mismatches: 65, Indels: 11
0.89 0.10 0.02
Matches are distributed among these distances:
716 9 0.01
717 152 0.25
718 200 0.33
719 247 0.41
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (716 bp):
GCATACAGAGTTCAATTCCAGTCTAAGATCGGACCGGACCAAGGGTTACAGCAGCACATGCTGGA
CTCGGGCATGTGTTGCTGCAGCATTTTTCTTCGTCAGGGCACCATCACCGAAGCATCGCCGGAAA
ACCTAACCGGCGGCATTAGGGTTCCGACGATCGGGCGAGCCGGGGGTGTGCACACATGATGTGCA
ATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCCAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTCTCTGAAAAGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAGTCCTTCAAAAAATATT
TAAAAAAGTCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGGCTTGCGCAT
CCCGTCTCTCTAGCCGACATAGTGCCCGTCCGCCCGCCCGCCCGCTTGTTTTGTCAGTTGGCTTA
G
Found at i:4400354 original size:26 final size:26
Alignment explanation
Indices: 4400325--4400375 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
4400315 TTGACTAAGG
* * *
4400325 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACAGAATTCATTCACAGTCTAAC
4400351 CATACAGAATTCATTCACAGTCTAA
1 CATACAGAATTCATTCACAGTCTAA
4400376 GATCAGACCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.27
Consensus pattern (26 bp):
CATACAGAATTCATTCACAGTCTAAC
Found at i:4402130 original size:26 final size:26
Alignment explanation
Indices: 4402094--4402146 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4402084 GTTGACTTAG
*
4402094 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4402120 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4402146 G
1 G
4402147 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4402204 original size:888 final size:891
Alignment explanation
Indices: 4399447--4404475 Score: 5886
Period size: 888 Copynumber: 5.7 Consensus size: 891
4399437 GTTGACTTAG
* * * * * *
4399447 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGTTTACGACAGCAAATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** *
4399512 CTCGGGCATGTGTTGGTGCCGCATTTTCCTTCGCCGATGCACCATCGCCAGAGCATCACCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC--AGCATCGCCGGAGA
*** * * *
4399577 ACCTGACCGACAAAATTAGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
129 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
4399642 GATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACGTCAAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
4399707 CCCCCTTAAAGTGAATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTTTGAAATG
259 CCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
4399772 GGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCT-AATTGTTTTTG
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTG
* * * *
4399836 TGCATGCGAACAAAAATTCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAACCCTTCTCGAAAAA
* * *
4399901 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTA
452 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
4399966 GCCTTGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
4400031 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
582 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
4400096 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGTCCACCCTCCTGCTCGTTTCATCCGTTGGC
647 CATCCCGTCTCTCTGGCCGACGTAGTG-CCG-CCG-CCA-GCT-C-G--C-TTTCGTCGGTTGGC
* * * * * * *
4400161 TTAGGTATACGGAGTTCATTCTCAGGCTAAGATTAGATCAGACCGAGGGTTACGACAGCAGGAT-
703 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
* * * * **
4400225 GGACAACACCCAGA-GAGGGACCCGACCGATCCCCGGCTTACGCGTCCCGCCCCTC-TGGTCGGC
768 GG-CAGCACGCAGAGGA-GGACCCGGCCGATCCCCGGCTTACGCATCCTACCCCTCTTGG-CGGC
** * * *
4400288 TGAGCAATCGTACGCTCATTTCGTGGGTTGACTAAGGCATACGGAGTTCATTCCCAGTCTAA
830 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * * *
4400350 CCATACAGAATTCATTCACAGTCTAAGATCAGACCGAATCGGGGGTTGCGACAGTACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
4400415 CTCGGGCATGTGTTGGTGTCGTATTTTTCTTCGTCGGGGCACCAT---CA-CA-----GGAGAAC
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGCATCGCCGGAGAAC
* * * *
4400471 CTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCAGGGGGTGTGCGCGCATGATGTGCGA
131 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
4400536 TGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-C
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
4400600 CCCTTAAAGA-ACATTTGAGATTTTTCAGTTTTGCT-ACAGTAGCCATTAAAGTGTATGAAA-GA
261 CCCTTAAAGAGA-ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG-
* * *
4400662 GGGACAC--TTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGTTGAATTGTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
4400725 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTT-TCGAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAA-CCCTTCTCGAAAAA
* ** ** * * * *
4400789 A-TTTAAAAAATCACGAACCACAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCATCTC
452 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
4400853 GCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
4400918 TTGGCACACAGAAATATGAAGATGAGCCTAAACCCACCTACCATCCTATCAATCCACGGCTTGCG
582 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * ** *
4400983 CATCTCGTCTTTCTGGCCGACATAGTGCCCGCCTGCCCGCCCGCACGCTCGTCGATTGGCTTAGG
647 CATCCCGTCTCTCTGGCCGACGTAGTG-CCGCC-GCCAGCTCG--CTTTCGTCGGTTGGCTTAGG
* * *
4401048 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGAG-GGCAGGATCGACA
708 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG-GCAGCAGGATCGGCA
* * * * * * * * * *
4401112 GCACGCAGAGGGGGTCCCAGTCGATCCTCAGCTTGCGCATCCCACCCATC-TGGCCGACTGAGCA
772 GCACGCAGAGGAGGACCCGGCCGATCCCCGGCTTACGCATCCTACCCCTCTTGG-CGGCTGAGCA
* * *
4401176 CTCGCACGCTCGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
836 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
4401232 GCAAATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
4401297 CTTGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGAAGCATCGCCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC--AGCATCGCCGGAGA
* * * *
4401362 ACCTGACTGGCGGCATTGGGGTTCCGACGATCGAGTGGGCCGGGGGGTGTGCGCACATGATGTGC
129 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
4401427 GATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAAAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
** * *
4401492 CCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTACAGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
4401557 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
4401622 GCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAGTCCTTCT-GAAAATA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA-CCCTTCTCGAAAAAA
* *
4401686 TTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAACTA-AAAACGAGTCGTCTTG
453 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
4401750 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
4401815 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCATGGCTTGCGC
583 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
4401880 ATCCCGTCTCTCTGGCCGACGTAGTG-C-CCGCCAGCTCG-TTTCGTCGGTTGGCTTAGGCATAC
648 ATCCCGTCTCTCTGGCCGACGTAGTGCCGCCGCCAGCTCGCTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * * * *
4401942 GGAGTTCATT-CCAATCTAAGACCAGATCGGACTGAAGGTTACGGTAGCAGGATCGGCAGCACGT
713 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
* * *
4402006 AGAGGAGGACCCGGCCGATCCCCGGGTTACGCATCCTACCCCTCTTGTCAGCTGAGCACCCGCAC
778 AGAGGAGGACCCGGCCGATCCCCGGCTTACGCATCCTACCCCTCTTGGCGGCTGAGCACCCGCAC
** *
4402071 GCTCGTTTCGCCGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
843 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
4402120 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGTAGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * *
4402185 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGATGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC--AGCATCGCCGGAGA
* * * * *
4402250 ACCCGATCGACGGAATTAGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
129 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
4402315 GATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
4402380 CCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
4402445 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
4402510 GCATGCCAACAAAAATACAAGGATCACGACTATCAAGTTTGGGGCAAAAAATCCTT-TCGAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC--CAAACCCTTCTCGAAAAA
* * ** * *
4402574 ATTTTTAAAAATCTCGAATCAAAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTTGTCTT
452 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
4402639 GCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
4402704 TTGGCACGTAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACG
582 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
4402769 CATCCCGTCTCTCCGGCCGGCGTAGTGCCCGCCCGCTCGCCAGTCCGTCCGCTCATTTCGTCGGT
647 CATCCCGTCTCTCTGGCCGACGTAGT----G-CCGC-CGCCAG--C-T-CG--C-TTTCGTCGGT
* *
4402834 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC-GAATCGAGGGTTGCGGCAGCA
699 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCA
* * * * * * * *
4402898 AGATCGACAGCATGTATAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCCT-TCCCTC-TGGC
763 GGATCGGCAGCACGCAGAGGAGGACCCGGCCGATCCCCGGCTTACGCAT-CCTACCCCTCTTGGC
*
4402961 TGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAG--T-
827 -GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
4403023 -
891 A
4403023 -C-TA---AG---A-T--C-G-----GATCAGACC--A---AGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
4403066 CTCTGGCATGTGTTGATGCCGTATTTTTCTTCGTCGGGGCACCAT------CA---CCGGAGAAC
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGCATCGCCGGAGAAC
** ** ** *
4403122 CTGACCGACAACATTGGGGTTCCGACGATCAAGGGGATCGTGGGGGTGTGCGCACATGATGTGCA
131 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCG
* *
4403187 ACGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* **
4403252 CCCCTTATAGAGAATTTGAGATTTTACAGGTTTGCTGGTAGTAGCCATTAAAGTGTCTGAAAT-G
260 CCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
4403316 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * ** * **** **
4403381 TATG-C--C--GAA-AC-----TC-CTTCCAAAAAATTT--TAAAAAATCCCGAAC-CGCAAAAA
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA-CCC-TTCTCG-AAAAA
** *
4403431 GGTTT-AAAAA--TC--A-TG-AAAAA---T-AGAAAA-C----------------GAGTCGTCT
452 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCA-AAAATCATGAAAAATAGAAAACGAGTCGTCT
4403468 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
4403533 ATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTAAT-GATACACGACTTG
581 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT-ATCGATCCACGGCTTG
* * * *
4403597 CGCATCCCTTCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCCCACTCGCTAATTTCATCGATTG
645 CGCATCCCGTCTCTCTGGCCGACGTAGTG-CCGC-CGCCAG----CTCGC---TTTCGTCGGTTG
* *
4403662 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGAGACCAGACCAAGGGTTGCGGCAGCAGGA
701 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
* * * *
4403727 TAGGCAGCATC-CAGAGGAGGACCCGACCGATCCCCGGCTTATGCATCCTGCCCCTC-TGGCCGG
766 TCGGCAGCA-CGCAGAGGAGGACCCGGCCGATCCCCGGCTTACGCATCCTACCCCTCTTGG-CGG
* ** * * * *
4403790 CTGAGCACCCGTACGCTCGTTTTATTGGTTGACTTAGGCATACAGAGTGCATTCCTAGTCTAA
829 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
4403853 GCATACGGAGTTCATTCCCAGTCTAAGATTTGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * ** **
4403918 CTCGGGCATGTGTTGGCGCCATATTTTTCTTCGACGGGGCAACATTGCGGGAGCATCGCCATAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCA-T-CGCCAGCATCGCCGGAGA
* * *
4403983 ACCTGACCGAAGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGGTGTGCACACATGATGTG
129 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTG
* *
4404048 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCGCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
4404113 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
4404178 GGGGAGACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTAAATTTGTTTT
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTT
* * * * ** *
4404243 -TGAATGCCAACAAAAATACACGGATCACCTCTACAAAGTTTGGGGTGAAAACCCCTTC-CTAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CCAAA-CCCTTCTCGAAA
* *
4404306 AAATTTTAAAAAATC-CTGAACCGCAAAAA-TTTCAAAAATCATGAAAAATAGAAAATGAGTCGT
450 AAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
4404369 CTTGCCATAAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * **
4404434 GCATTGGCACACAAAAATATGAAGAAATGCCTAAACCCACCT
579 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
4404476 TGGGATCCCG
Statistics
Matches: 3543, Mismatches: 432, Indels: 302
0.83 0.10 0.07
Matches are distributed among these distances:
824 1 0.00
825 3 0.00
826 179 0.05
827 3 0.00
828 2 0.00
830 149 0.04
831 3 0.00
832 2 0.00
835 2 0.00
838 1 0.00
839 1 0.00
841 1 0.00
842 1 0.00
846 2 0.00
847 12 0.00
849 1 0.00
850 5 0.00
852 62 0.02
853 1 0.00
854 6 0.00
855 2 0.00
856 7 0.00
857 8 0.00
858 8 0.00
859 2 0.00
860 2 0.00
863 180 0.05
864 64 0.02
865 7 0.00
867 2 0.00
869 3 0.00
870 107 0.03
871 144 0.04
873 2 0.00
875 2 0.00
876 10 0.00
877 8 0.00
878 7 0.00
879 8 0.00
881 61 0.02
882 256 0.07
883 6 0.00
884 7 0.00
885 2 0.00
886 16 0.00
887 207 0.06
888 639 0.18
889 95 0.03
890 196 0.06
891 32 0.01
892 129 0.04
893 127 0.04
894 32 0.01
895 31 0.01
896 173 0.05
897 138 0.04
898 9 0.00
900 2 0.00
901 3 0.00
902 3 0.00
903 197 0.06
905 1 0.00
906 37 0.01
907 131 0.04
908 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (891 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGCATCGCCGGAGAAC
CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACCCTTCTCGAAAAAATTT
TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGACGTAGTGCCGCCGCCAGCTCGCTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
GGAGGACCCGGCCGATCCCCGGCTTACGCATCCTACCCCTCTTGGCGGCTGAGCACCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:4403863 original size:26 final size:26
Alignment explanation
Indices: 4403827--4403879 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4403817 GTTGACTTAG
*
4403827 GCATACAGAGTGCATTCCTAGTCTAA
1 GCATACAGAGTGCATTCCCAGTCTAA
* *
4403853 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTGCATTCCCAGTCTAA
4403879 G
1 G
4403880 ATTTGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTGCATTCCCAGTCTAA
Found at i:4407204 original size:26 final size:26
Alignment explanation
Indices: 4407175--4407230 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
4407165 TGGGTTGACT
4407175 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
*
4407201 TAAGTATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
4407227 TAAG
1 TAAG
4407231 ACCGGATTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:4407973 original size:15 final size:15
Alignment explanation
Indices: 4407953--4407988 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
4407943 ACCGAAGGGT
4407953 GCAGCAGCAGGATAG
1 GCAGCAGCAGGATAG
4407968 GCAGCAGCAGGATAG
1 GCAGCAGCAGGATAG
4407983 GCAGCA
1 GCAGCA
4407989 TGTAGAGGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.33, C:0.22, G:0.39, T:0.06
Consensus pattern (15 bp):
GCAGCAGCAGGATAG
Found at i:4409004 original size:26 final size:26
Alignment explanation
Indices: 4408975--4409027 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4408965 GTTGACTTAG
4408975 GCATACAGAGTTCATACCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
** *
4409001 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
4409027 G
1 G
4409028 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAGTCTAA
Found at i:4409305 original size:908 final size:900
Alignment explanation
Indices: 4405428--4410838 Score: 6098
Period size: 895 Copynumber: 6.1 Consensus size: 900
4405418 GTTGACTTAG
** *
4405428 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGATAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCACATGCTGGG
** * ** *
4405493 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCACCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC-GTGGAGCATCACCGGAGA
* * ** *
4405558 ACCTGACCGGCAGCATTGGGG-T-------TTAGGGGATC--AGGG-GTGCGCACATGATGTGCG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATTAGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * ** *
4405612 ATGGGTGCTGGTACTTGACCCTTATATTGTCCCCCTATCCCTCATCAAACCTTGAGGACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
* * * *
4405677 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGTCAGTAGCCATTAAAGTATCTAAAACGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
* *
4405742 GGACACTTTTTTCAAATGGTCACTAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * *
4405807 CATGCCAACAAAAATACAAAGATCACGTCTACCAAGTTTGAGGCCAAAAATCCTTCTGAAAAAAA
390 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
* * * * * *
4405872 TTTAGAAAATCCTGAACTGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGC
455 TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGC
* *
4405937 CATGAAACTTGACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* ** * *
4406002 GGGATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGCA
585 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * *
4406067 TCCTGCCTCTCTGGC-C--G-G-CGTACTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGTT
650 TCCCGCCTCTCTGGCGCGAGTGCCG-CCCGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * ** * * ** * * * *
4406127 TAGGCATGCAGAGTTCATTCATAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAAGATCA
714 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGTAGGATCG
* * * * ** *
4406192 ACAGCACGCAAAGGGGGACCCGATCGATCCCCGACTTGTGCATCCCGCCCC-CTGGCCTG-CTGA
779 ATAGCA-GCAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCC-GACTGA
* * *
4406255 GCACCCGCAGGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCGAA
842 GCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
4406314 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTTGTGGCCAGCACCATGCT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGG-TTGTGG-CAGCA-CATGCT
* * * **
4406379 GGGCTCAGGCATG-GCTTGTGCGC-GA--TTT-TTCGTC---G--CCA-----GAGCATCGTCGG
63 GGGCTCGGGCATGTGCTGGTGC-CACATTTTTCTTCGTCGGGGCACCATCGTGGAGCATCACCGG
* * * *
4406429 AGAAACCTGACCGGCCGGCATT-GGG-TCCGACTATCAGGGGAGCCAGGGGGGTGTGGCGCGCAT
127 AG-AACCTGACC-GACGGCATTGGGGTTCCGACGATTAGGGG-GCC-GGGGGGTGT-GCGCACAT
**
4406492 GATGTTTGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGA
187 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
* *
4406556 ACTCACACCCCCCTTAAAGAGCATTTGTGA--TTACATGTTTGCTGCCAGTAGCCATTAAAGTGT
252 ACTCACA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
4406619 CTAAAAT-GGGATAC-TTTTTCAAATTGGTCACAAAATCTTGTACACTTTGAG-TTTTAGCTGAA
316 CTAAAATGGGGACACTTTTTTCAAA-TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * * *
4406681 TTTTTTTGTGCTTGCCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAACCACCA
380 TTTTTTTGTGCATGCCAAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * * * *
4406746 TCCGAAAAAATTTTAAAAAATCTTGGGACCG-CAAAAGTTTTAAAAATCGTGAAAAATAGAAAAC
444 TCTGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
4406810 GAGT-AGTCTTGCCATGAAACTTCACGTGATA-GCTTAAGGGACCATTGTATGAATTTACAAGCC
508 GAGTCA-TCTTGCCATGAAACTTCACGTGA-AGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
4406873 ATAAAAATGGCATTGGTACACAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGAT
571 ATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* *** * * *
4406938 CCACGGCTTGTGCATCCCGCCTCTCTGGCTG-GAGTAATGCTCGCCCGC-CTACCCGCCCGCTCC
636 CCACGGCTTGCGCATCCCGCCTCTCTGGC-GCGAGTGCCGCCCGCCCGCTC-GCCCGCCCGCTCG
* * * *
4407001 TTTAGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAAGATTGGACCAGACCAAGGGTT
699 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
* * * *
4407066 GCAGCAGCAGGATTGATAACACGCAGAGGGGGACCCGGTCGATCCCCGACTTACGCATCCTGCCC
764 GCAGCAGTAGGATCGATAGCA-GCAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCTGCCC
** ** * * *
4407131 CTCTGGCCGGTTGAGTGCCCGCATGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCC
828 CTCTGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
4407196 CAGTCTAA
893 CAGTCTAA
* * ** * * *
4407204 GTATACGGAGTTCATTCCCAGTCTAAGACCGGATTGGACCAAGGATTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCACATGCTGGG
* * *
4407269 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCGTCGTCGGAGCATCTCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGT-GGAGCATCACCGGAGA
* * * * *
4407334 ACCTAACTGACGGCATTGGGGTTTCGGA-GATTGGGGGAGCCGGGGGGGGTGTGCGCAAATGATG
130 ACCTGACCGACGGCATTGGGG-TTCCGACGATTAGGGG-GCC--GGGGGGTGTGCGCACATGATG
* *
4407398 TGCGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTAACCCTCATCAAACCTCAAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * *
4407463 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGATGCCATTAGCCATTAAAGCGTCTAAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
* * *
4407528 ATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCAAGTTTTTAGCTGTATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
4407593 TGTGCATACCAAAAAAAATAAATACAAGGATCACGTCTACCAAGTTTGGGGTCGAAACTCCTTTT
386 TGTGCATGCC---AAAAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT
* * *
4407658 GAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTT-GAAAATCATGAAAAATAGAAAATGAGT
447 GAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* * *
4407722 CGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAA
512 CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*** * *
4407787 ATGGCATTGGCATGTAGAAATATGAAGA--TG--T--A--C-CTTAACACCCTATCGATCCACGG
577 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * ***
4407843 CTTGAGCATCCCGCTTCTCTGGC-CG-GT--------ATAG-T-GCCCGCCCGCTCGTTTCGTCG
642 CTTGCGCATCCCGCCTCTCTGGCGCGAGTGCCGCCCGCCCGCTCGCCCGCCCGCTCGTTTCGTCG
* * * * * *
4407896 GTTGGCATAGGTATACGGAGTTCATTCCCACTCTAAGATTGGACCAAACCGAAGGGTGCAGCAGC
707 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG-AGGGT--TGCAGC
* * ** *
4407961 AGGATAGGCAGCAGCAGGATAGGCAGCATGTAGAGGAGCACCCGACCGATCCCCAGCTTACGCAT
769 A-G-TA-G--G-ATC--GATA-GCAGCA-G-AG-GG-GGACCCGGTCGATCCCCGGCTTACGCAT
* * *
4408026 -CTCGCCCTTCTGGCCGACTGAGCACCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAG
821 CCT-GCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
*
4408090 ATCATTCCCAGTCTAA
885 TTCATTCCCAGTCTAA
* * * * * * * *
4408106 ACATACAGAGTTCATTCCTAGTCCAAGATCGGACTGAACCAAGGGTTGCGACAGCACATGCT-GG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCACATGCTGGG
** * * * * * * *
4408170 CTTAGGAATGTGCTAGTGCCGCCATTCTTCTTCGTTGAGCGCACCATC---GCG-A--A----A-
66 CTCGGGCATGTGCTGGTGCC-ACATTTTTCTTCGTCG-GGGCACCATCGTGGAGCATCACCGGAG
* * *
4408224 AACCTGATCGACGGCATTGGGGTTCCGACGA-TCGGGGGCCGGGGGGTGTGCGCACACGATGTG-
129 AACCTGACCGACGGCATTGGGGTTCCGACGATTAGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
4408287 GATGTGGTTGCTGGTACTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GATG-GG-TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * *
4408352 CACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
* * * *
4408417 TGGGGACACTTTTTTCAATTGGTCACAAAATGTTGTTCACTTCGAGTTTTTAGCTGAATGTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
4408482 GTCCATGCCAAAAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
387 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * *** * *
4408547 AATTATAAAAAATCCCGAACCACCAAAAGTTTCAAAAATCATGAAAAATACAAAACGAGTCATTT
452 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
* * *
4408612 TGGCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
4408677 ATTGGCACACAGAGATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGGCTTGC
582 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
4408742 GCATCCCGTCTCTCTGGTCGACGAAGTGCCGGCCCGCCCGCTCGCCCGCACGCTCGTTTCGTTGG
647 GCATCCCGCCTCTCTGG-CG-CG-AGTGCC-GCCCGCCCGCTCGCCCGCCCGCTCGTTTCGTCGG
* * * ** *
4408807 TTGGCTTAGGCATATGTAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGTAGTA
708 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGTA
** * * * * * *
4408872 GGATCGATAGCATGTGGAGAGGGACCCGGTTGATCCTCGGCTTACGCATCCTTCCCCTCTAGCCT
773 GGATCGATAGCA-GCAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCG
** * * *
4408937 ACTGAGCACCCGTTCGCTCGTCTCATGGGTTGACTTAGGCATACAGAGTTCATACCCAGTCTAA
837 ACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
4409001 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCC-AGGGTTATGGCAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CCAAGGGTTGTGGCAGCACATGCTGG
* * ** **
4409065 GTTCGGGCATGTGTTGGTTTCACATTTTTCTTCGTCGGGGTGCCATCGCTGGAGCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG-TGGAGCATCACCGGAG
* * *
4409130 AACCTGACCGGCGGCATTGGGGTTCCGAAGATTAAGGGGCCGGGGGGGGTGTGCGCACATGATGT
129 AACCTGACCGACGGCATTGGGGTTCCGACGATTAGGGGGCC--GGGGGGTGTGCGCACATGATGT
* *
4409195 GCGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * * *
4409260 CACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGCCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
*
4409325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
4409390 GTGCATGCCAAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
387 GTGCATGCC--AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-A
* *
4409455 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGA-GAAAAATAGAAAACGACTC
449 AAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATC-ATGAAAAATAGAAAACGAGTC
** * *
4409519 ATCTCACCATCAAACTTCACGTGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
513 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* **
4409584 TGGCATTGGCACACAGAAATATGAAGATGTGCCAAAACTAACCTACCACCCTATCGATCCACGGC
578 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
** * * *
4409649 TTGCGCATCATGCCTCTCTGGCCGGCGCAGTGCCTGCCCG--C-C-CGCCCGCCCTCTCATTTCA
643 TTGCGCATCCCGCCTCTCTGG-C-GCG-AGTGCC-GCCCGCCCGCTCGCCCGCCCGCTCGTTTCG
* * * *
4409710 TCGGTTGGCTTAGGCATATGGAGTTCATTACCTGTCTAAGATCGGACCAGATCGAGGGTT--A-C
704 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGC
* * * * *
4409772 GGTA-G--C---A--AGCAGAGGGGGACCCAGTCGATCCCTGGCTTACGTATCCTGCGCCTCTGG
769 AGTAGGATCGATAGCAGCAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCTGCCCCTCTGG
*
4409829 CCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
834 CCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
4409894 AA
899 AA
* * ** *** * *
4409896 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATTGGATTGAGGGTTGCGGCAGCACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCACATGCTGGG
* * * * *
4409961 CTCGAGCATGTGCTGGTGTCACATTTTTCTTC-ACTGGGGCACCATCGTCGGAGCATCGCCGAAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGT-GGAGCATCACCGGAG
* * *
4410025 AACCTGACTGACGGCATTGGGGTTCCGACGA-TCGGGAGGCCCGGGGGGTGTGCGCACATGATAT
129 AACCTGACCGACGGCATTGGGGTTCCGACGATTAGGG-GG-CCGGGGGGTGTGCGCACATGATGT
* * *
4410089 GCGATGGGTGCTAGTACTTGGCACTTATATTGGCCCCCTATCCCTCGTCAAACCTCAAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
*
4410154 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
4410219 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
4410284 GTGCATGCCAACAAAAGTACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTCTGAAAA
387 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * *
4410349 AATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
* * * *
4410414 TGCCAAGAAACTTCATGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGTCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
4410479 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
582 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** ** * * * * *
4410544 GCATCCCGTTTCTCTGGC-C--G-G-CG-TAG--TGCCCGCCCGCCCTCTCGTTTTGTTGGTTGG
647 GCATCCCGCCTCTCTGGCGCGAGTGCCGCCCGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * *
4410601 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTACGGCAGCAGGAT
712 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGTAGGAT
* * ** * * * * * * * *
4410666 CTG-TAGCAGGAATAGGGGGACCCGACCAATTCTCGGCTTGCGCATCCCGCCCCTTTGGTCGGCT
777 C-GATAGCA-GCAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGACT
** * * * *
4410730 GAGTGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAATCTAA
840 GAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
4410791 GTATACAGAGTTCATTCCTAGTCTAAGATTGGCCCGGA-CATAGGGTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCA-AGGGTTG
4410839 CGGTAGCAGG
Statistics
Matches: 3836, Mismatches: 526, Indels: 317
0.82 0.11 0.07
Matches are distributed among these distances:
874 13 0.00
875 13 0.00
876 7 0.00
880 3 0.00
881 1 0.00
882 9 0.00
883 71 0.02
884 109 0.03
885 381 0.10
886 95 0.02
887 145 0.04
888 273 0.07
889 152 0.04
890 121 0.03
891 222 0.06
892 52 0.01
893 2 0.00
894 269 0.07
895 513 0.13
896 25 0.01
897 6 0.00
898 16 0.00
899 55 0.01
900 11 0.00
901 36 0.01
902 242 0.06
903 54 0.01
904 41 0.01
905 34 0.01
906 64 0.02
907 80 0.02
908 298 0.08
909 101 0.03
910 114 0.03
911 206 0.05
912 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTGGAGCATCACCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATTAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
TTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGCCTCTCTGGCGCGAGTGCCGCCCGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGTAGGATCGAT
AGCAGCAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGACTGAGCAC
CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:4409900 original size:26 final size:26
Alignment explanation
Indices: 4409870--4409922 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4409860 GTTGACTTAG
4409870 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
4409896 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4409922 G
1 G
4409923 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4410801 original size:26 final size:26
Alignment explanation
Indices: 4410765--4410817 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4410755 GTTGACTTAG
*
4410765 GTATACGGAGTTCATTCCCAATCTAA
1 GTATACAGAGTTCATTCCCAATCTAA
* *
4410791 GTATACAGAGTTCATTCCTAGTCTAA
1 GTATACAGAGTTCATTCCCAATCTAA
4410817 G
1 G
4410818 ATTGGCCCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GTATACAGAGTTCATTCCCAATCTAA
Found at i:4410925 original size:185 final size:185
Alignment explanation
Indices: 4410608--4411215 Score: 780
Period size: 185 Copynumber: 3.3 Consensus size: 185
4410598 TGGCTTAGGC
* * *
4410608 ATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCA-AGGGTTACGGCAGCAGGATCTG-TA
1 ATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGA-CATAGGGTTGCGGCAGCAGGATC-GACA
* * * * *
4410671 GCAG-G-AATAGGGGGACCC-GACCAATTCTCGGCTTGCGCATCCCGCCCCTTTGGTCGGCTGAG
64 GC-GCGCAA-AGGGGGACCCAG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* ** * *
4410733 TGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAATCTAAGT
126 CGCCCGCACACTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAAGA
* * * *
4410793 ATACAGAGTTCATTCCTAGTCTAAGATTGGCCCGGACATAGGGTTGCGGTAGCAGGATCGACAGC
1 ATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACATAGGGTTGCGGCAGCAGGATCGACAGC
* *
4410858 GCGCAAAGGGGGACCCAGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
66 GCGCAAAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
*
4410923 GCACACTCGTTTCGTGGGTTGACTTAGGCT-TACGAAGTTCATTCCCAGTCTAAGA
131 GCACACTCGTTTCGTGGGTTGACTTAGG-TATACGGAGTTCATTCCCAGTCTAAGA
* * * * **
4410978 ATACAGATTTCATTCCCAGTCTAAGATCGGACCAGACCTAGGTTTGCAACAGCAGGATCGACAGC
1 ATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACATAGGGTTGCGGCAGCAGGATCGACAGC
* * *
4411043 ACGCAAAGGGGGACCCAGCCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
66 GCGCAAAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * *
4411108 GCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
131 GCACACTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAAGA
* * **
4411163 ATAC-GAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGC
1 ATACAG-AGTTCATTCCCAGTCTAAGATTGGACCAGACATAGGGTTGCGGCAGC
4411216 TAATGCTGAG
Statistics
Matches: 370, Mismatches: 45, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
184 5 0.01
185 361 0.98
186 4 0.01
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (185 bp):
ATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACATAGGGTTGCGGCAGCAGGATCGACAGC
GCGCAAAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
GCACACTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAAGA
Found at i:4411172 original size:26 final size:26
Alignment explanation
Indices: 4411135--4411187 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
4411125 GTTGACTTAG
4411135 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4411161 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
4411187 G
1 G
4411188 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4411955 original size:26 final size:26
Alignment explanation
Indices: 4411919--4411997 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
4411909 GTTGACTTAG
*
4411919 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4411945 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
4411971 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4411997 G
1 G
4411998 ATCAGACCGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4412460 original size:27 final size:26
Alignment explanation
Indices: 4412421--4412516 Score: 138
Period size: 26 Copynumber: 3.7 Consensus size: 26
4412411 CTCCTTCCGA
* *
4412421 AAAAATTTTAAAAAATCTCGAACTGC
1 AAAAAGTTTCAAAAATCTCGAACTGC
* * *
4412447 AAAAAGTTTCAAAAATCGACAAACTAC
1 AAAAAGTTTCAAAAATC-TCGAACTGC
4412474 AAAAAGTTTCAAAAATCTCGAACTGC
1 AAAAAGTTTCAAAAATCTCGAACTGC
4412500 AAAAAGTTTCAAAAATC
1 AAAAAGTTTCAAAAATC
4412517 GTGAAAATAA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 38 0.62
27 23 0.38
ACGTcount: A:0.52, C:0.17, G:0.08, T:0.23
Consensus pattern (26 bp):
AAAAAGTTTCAAAAATCTCGAACTGC
Found at i:4412530 original size:27 final size:27
Alignment explanation
Indices: 4412441--4412530 Score: 105
Period size: 26 Copynumber: 3.4 Consensus size: 27
4412431 AAAAATCTCG
* **
4412441 AACTGCAAAAAGTTTCAAAAATCGACA
1 AACTACAAAAAGTTTCAAAAATCGTGA
4412468 AACTACAAAAAGTTTCAAAAATC-TCG-
1 AACTACAAAAAGTTTCAAAAATCGT-GA
*
4412494 AACTGCAAAAAGTTTCAAAAATCGTGA
1 AACTACAAAAAGTTTCAAAAATCGTGA
*
4412521 AAATA-AAAAA
1 AACTACAAAAA
4412531 CGAGTCGTCT
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
26 28 0.52
27 26 0.48
ACGTcount: A:0.54, C:0.16, G:0.10, T:0.20
Consensus pattern (27 bp):
AACTACAAAAAGTTTCAAAAATCGTGA
Found at i:4412872 original size:26 final size:26
Alignment explanation
Indices: 4412838--4412888 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
4412828 TGACTTAGGT
* **
4412838 ATACGGAGTTCATTCTGAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
4412864 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
4412889 ATCAGACCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:4415252 original size:26 final size:26
Alignment explanation
Indices: 4415223--4415275 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4415213 GTTGACTTAG
*
4415223 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
4415249 GCATACGAAGTTCGTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
4415275 G
1 G
4415276 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:4415898 original size:26 final size:26
Alignment explanation
Indices: 4415868--4415920 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4415858 GTTGACCTAG
*
4415868 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4415894 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4415920 G
1 G
4415921 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4416398 original size:26 final size:26
Alignment explanation
Indices: 4416344--4416401 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
4416334 ACTCCTTTCA
* **
4416344 AAAAAATTTAAAAAATCTTGAAACGT
1 AAAAAATTTAAAAAATCGTGAAAAAT
* *
4416370 AAAAAGTTTTAAAAATCGTGAAAAAT
1 AAAAAATTTAAAAAATCGTGAAAAAT
4416396 AAAAAA
1 AAAAAA
4416402 CGAGTCGTCT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.62, C:0.05, G:0.09, T:0.24
Consensus pattern (26 bp):
AAAAAATTTAAAAAATCGTGAAAAAT
Found at i:4417638 original size:26 final size:26
Alignment explanation
Indices: 4417599--4417651 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4417589 GTTGACTTAG
*
4417599 GCATACAGACTTCATTCCTAGTCTAA
1 GCATACAGACTTCATTCCCAGTCTAA
* *
4417625 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGACTTCATTCCCAGTCTAA
4417651 G
1 G
4417652 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGACTTCATTCCCAGTCTAA
Found at i:4418454 original size:905 final size:902
Alignment explanation
Indices: 4416720--4420281 Score: 4939
Period size: 905 Copynumber: 4.0 Consensus size: 902
4416710 TGCGCATCAA
* * * * **
4416720 GAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGAACCAGATTGAGGGT
1 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * * *
4416785 TACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTTG-TCGGGGCCCCAT
66 TACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTCGGGGCACCAT
* * * * * * *
4416849 CGTCGGAGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCAGGCGATC-GAGGGG-CTGCG
131 CGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGG
*
4416912 GGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
196 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
4416977 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAC
261 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
4417042 CCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGT
326 CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
4417107 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
391 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
** ** *
4417172 AAAAAT--TTT--AAAAAA---T-----CCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAAC
456 AAAAATCCTTTCAAAAAAATTTTAAAAAATTCGAACCCCAAAAAGTTTCAAAAATCATGAAAAAT
*
4417224 AGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTAC
521 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTAC
4417289 AAGCCATAAAAATGGCATTGGCATGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
586 AAGCCATAAAAATGGCATTGGCATGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * *
4417354 TCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCTGCCTGCCCGCCAGCCTGC
651 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCTGCCCGCCTGCCCGC
* * * * *
4417419 TCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGCCTAAGATCGGACCAGACTGAGG
716 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAAGACCGAGG
* * * ** * *
4417484 GTTACGGCAGCAAGATCGGCACCATGCAGAGGGGGACTTGGCTGATCCCTGACTTGCGCATCCCG
781 GTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCG
* * *
4417549 CCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACA
846 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTACGTGGGTTGACTTAGGCATACG
* * *
4417606 GACTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGT
1 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* *
4417671 TGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCT-GGGGCACCAT
66 TACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTCGGGGCACCAT
* * ** * * *
4417735 CGTCGGAGCATCACCGGAGAACCTGATTGACAGCTTTGGGGTTCCGGCGATCGGGGGGGCCAGGG
131 CGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGG
* * *
4417800 GTGGTGTGCGCACATGATCTGTGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
195 G-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
4417865 CATCAAACCTCAAGAACTCACACCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
259 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
** * *
4417930 AGTTATTAAAATGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAA
324 AGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
4417995 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAGAAATATAAGGATCACGTCTACCAAGTTTGGG
389 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* *
4418060 GTCAAAAATCCTTTCAAAAAAATTTTAAAAAATGTCGAGCCCCAAAAAGTTTCAAAAATCGTGAA
454 G-CAAAAATCCTTTCAAAAAAATTTTAAAAAAT-TCGAACCCCAAAAAGTTTCAAAAATCATGAA
* *
4418125 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGACTTAACGGACCATTGTATGAAT
517 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAAT
* * *
4418190 TTACAAGCCATAAAAATGGCATTGGCATGCACAAATATAAAGATCTACCTAAACCCACCTACCAC
582 TTACAAGCCATAAAAATGGCATTGGCATGCACAAATATGAAGATGTGCCTAAACCCACCTACCAC
* *
4418255 CCTATCGATCCACGGCTTGCGCATCCCGTTTCTCTGGCCAACGTAGGGCCCGCCTGCCCGTCC-G
647 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCTGCCCG-CCTG
* * * **
4418319 CCCGCTCGTTTCATCGGTTGCCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGAACCGGAC
711 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAAGAC
* * * ** * * * *
4418384 CGAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTTGATCCTCGGCTTACGTA
776 CGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCA
* * * * * *
4418449 TCCCGCCCCTTTGGCCAGCTGAGCTCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACG
841 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTACGTGGGTTGACTTAGGCATACG
* *
4418511 GAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGT-TAAGATCGGATCGGACCGAGGGT
1 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * * * * *
4418575 TGCGGCAGCACATACTGGGCTTGGGCATGTGCTGTTGCCGCA-TTTTCTTCGC-CCGGGCACCAT
66 TACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTCGGGGCACCAT
* * * *
4418638 CGCCGGAGCATCGTCGGAGAACTTGACCGGCGGCATTGGGGTTCCGACGATCGGCGGGGCCGGGG
131 CGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGG
4418703 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
196 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
4418768 TCAAACCTCGAGAACTCACACACCCTTAAAGTGCATTTGATATTTTACAGGTTTGCTGCCAGTAG
261 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
4418833 CCA-TAAAGTATC-AGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
326 CCATTAAAGTGTCTA-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
4418896 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
390 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * *
4418961 CCAAAAATCC-TTCAGAAAAAGTTTTAAAAAA-TCG-----TAAAAAGTTTCAAAAATCGTGAAA
455 -CAAAAATCCTTTCA-AAAAAATTTTAAAAAATTCGAACCCCAAAAAGTTTCAAAAATCATGAAA
* **
4419019 AATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTATGAATT
518 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATT
* * *
4419084 TACAAGCCATAAAAATGGCATTGGCATGTAGAAATGTGAAGATGTGCCTAAACCCACCTACCACC
583 TACAAGCCATAAAAATGGCATTGGCATGCACAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * *
4419149 CTAACGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCC
648 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCTGCCCGCCTGCC
**
4419214 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGGCAAGACCG
713 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAAGACCG
** * * ** * * *
4419279 AGGGTTGTGGCAGCAGGATTGGTAGCACATAGAGGGGGACTCAGCCGATCCCCGACTTGTGCATC
778 AGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATC
*
4419344 CCGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTACGTGGGTTGACTTAGGCATACG
843 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTACGTGGGTTGACTTAGGCATACG
*
4419404 GAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGT
1 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* * * *
4419468 TACGACAGCACATGCTGGGCTCAGGCATGTGCTAGTGCCGTATTTTTCTTC-ATCGGGGCACCAT
66 TACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTCGGGGCACCAT
* * * * *
4419532 CGCCAGAGCATTGCCGGAGAACCTGACCGGCGGCATTTGGGTTCCAGTGATCGGGGGGGCCGGTG
131 CGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGG-G
* **
4419597 AGGTTGTGCGCACAT-ATGTGCGATGGGTGCTGGTACTTGGTGCTTATATTGGCCCCCTATCCCT
195 -GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * * *
4419661 CATCAAACCTCGAGAACTCACACCCCCTTGAAGAGCATTTCAGATTTTTCAGGTTCGCTGCCAGT
259 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
4419726 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
324 AGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
4419791 GTTTTTAGCTGAATTTTTTTGTGCACGCCAATAAAAATATACAAGGATCATGTCTACCAAGTTTG
389 GTTTTTAGCTGAATTTTTTTGTGCATGCCAA-CAAAA-ATACAAGGATCACGTCTACCAAGTTTG
* * * **
4419856 GGGCAAAAACTCTTTTCGAAAAAATTTTAAAAAATCCTGAACCCCAAAAAGTTTTGAAAATCATG
452 GGGCAAAAA-TCCTTTCAAAAAAATTTTAAAAAATTC-GAACCCCAAAAAGTTTCAAAAATCATG
* * * **
4419921 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACTGTTGTATGA
515 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGA
* *
4419986 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACC
580 ATTTACAAGCCATAAAAATGGCATTGGCATGCACAAATATGAAGATGTGCCTAAACCCACCTACC
* * ** *
4420051 ACCCTATCGATCGACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTATTGCCCG--TAGCCCGCC
645 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCT-GCCCGCC
* *
4420114 TGCCTAC-CTAGTCGTTCCGTCGGTTTGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-A
709 TGCC--CGC---TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA
* * ** * * *
4420177 GACAGGACCGAGGGTTACGACAGCAGGATTAGCAGTACGCAGCGGGGGACCCGGCCGATCCCCGG
769 -ACAAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGA
* * * **
4420242 CATGTGCATTCCGCCCCTCTGGTTGGCTGAGCGCCCGCAC
833 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
4420282 ATTCATTCCC
Statistics
Matches: 2371, Mismatches: 255, Indels: 78
0.88 0.09 0.03
Matches are distributed among these distances:
886 157 0.07
887 6 0.00
888 1 0.00
889 2 0.00
890 244 0.10
891 7 0.00
892 17 0.01
893 442 0.19
894 72 0.03
895 117 0.05
896 99 0.04
897 10 0.00
898 50 0.02
899 9 0.00
900 143 0.06
901 123 0.05
902 4 0.00
903 69 0.03
904 70 0.03
905 592 0.25
906 3 0.00
908 134 0.06
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (902 bp):
GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
TACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTCGGGGCACCAT
CGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGG
GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
AAAAATCCTTTCAAAAAAATTTTAAAAAATTCGAACCCCAAAAAGTTTCAAAAATCATGAAAAAT
AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCATGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCTGCCCGCCTGCCCGC
TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAAGACCGAGG
GTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCG
CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTACGTGGGTTGACTTAGGCATACG
Found at i:4418534 original size:26 final size:25
Alignment explanation
Indices: 4418504--4418555 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
4418494 GTTGACTTAG
*
4418504 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGT-TAA
4418530 GCATACGGAGTTCATTCCCAGTTAA
1 GCATACGGAGTTCATTCCCAGTTAA
4418555 G
1 G
4418556 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCAGTTAA
Found at i:4419009 original size:19 final size:21
Alignment explanation
Indices: 4418975--4419020 Score: 69
Period size: 19 Copynumber: 2.3 Consensus size: 21
4418965 AAATCCTTCA
4418975 GAAAAAGTTTTAAAAAATCGT
1 GAAAAAGTTTTAAAAAATCGT
*
4418996 -AAAAAG-TTTCAAAAATCGT
1 GAAAAAGTTTTAAAAAATCGT
4419015 GAAAAA
1 GAAAAA
4419021 TAGAAAACGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 12 0.52
20 11 0.48
ACGTcount: A:0.57, C:0.07, G:0.13, T:0.24
Consensus pattern (21 bp):
GAAAAAGTTTTAAAAAATCGT
Found at i:4419435 original size:25 final size:26
Alignment explanation
Indices: 4419397--4419448 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
4419387 GTTGACTTAG
4419397 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4419423 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4419448 G
1 G
4419449 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 20 0.77
26 6 0.23
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4421170 original size:26 final size:26
Alignment explanation
Indices: 4421141--4421193 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4421131 CTTGACTTAG
4421141 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
* *
4421167 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
4421193 G
1 G
4421194 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:4423586 original size:867 final size:871
Alignment explanation
Indices: 4420283--4428092 Score: 8607
Period size: 901 Copynumber: 8.9 Consensus size: 871
4420273 CGCCCGCACA
* * * *
4420283 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGGTCGGGCATG
1 TTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * * *
4420348 TGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAAAACCTGACCGA
66 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGA
* * *
4420413 CGGCATTGGGGTT-CG--GA---------CGGGGGGTGTGCACAGATGATGTGCGATGGGTGCTA
131 CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
4420466 GTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCGAGAACTTACACCTCCTTAAAG
196 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
** *
4420531 AGCATTTGAGATTTTACAGGTTTGCTATCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTT
261 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
4420596 TTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATACCAAAA
326 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * * *
4420661 AAAATACAAGGATCATGTCTACCAAGTTTGGGGTCAAAACACCTTTCAAAAAAATTTTAAAAAAT
391 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
*
4420726 CCTGAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
456 CCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
**
4420791 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
521 CACGTGAAGGCTTAAGGGACC----TA-GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* * *
4420856 AATATGAAGATGTGCCTAAACCCACCTACCACCCTCTCGATCCACGGCTT-CTGTATCCCGTCTT
581 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC-GCATCCCGTCTC
* * * * **
4420920 TCTGGTCGGCGTAGAGCCCGCCCGCCCGCTC-GCCCACCTGCTCGTTTTTTCGGTTGGCTTAGGC
645 TCTGGCCGACGTAGTGCCCGTCCGCCCGC-CAG--C-CC-GCTCGTTTCGTCGGTTGGCTTAGGC
* * * *
4420984 ATACGGAGTTCATTCCCAGTCTAAGATCAGAGCGGACCAAGGGTTACGGCAGTAGGATCGGCAGC
705 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGC
* * * *
4421049 ACGCAGAGGGGGACCCGATCGATCTCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
770 ACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * *
4421114 GCATGCTCATTTCGTGGCTTGACTTAGGCATACGGAG
835 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
*
4421151 TTCATTCCCAGCCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTAC
1 TTCATTCCCAG--T---C-TA---AG---------A-T-T--G----GACCGGACCGAGGGTTGC
* * * * *
4421216 GACAGCACATGTTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGCC
40 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC
* * *
4421281 GGAG-A--ACC--TG-ACCTG--CGA---CATTAGGGTTCCGGCGATCGGGGGGCCGGGGGGGTG
105 GGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTG
* *
4421335 TGCGCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAA
169 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
4421400 ACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTATAGGTTTGCTGCCA-TAGCCAT
234 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
4421464 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-TCTTT
299 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT-TTT
* * ** * *
4421528 TACCTGAATTTTTTTATGCACACCAACAAAAATACAAGGACCACGTCTACCAAGTTTGGGCCCAA
363 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * * * *
4421593 AACTGCTTCTGAAAAAATTTTAAAAAATCCCT-AACCACAAAAAGTTCCAAAAATCATAAAAAAT
428 AACTCCTTCCGAAAAAATTTTAAAAAAT-CCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
*
4421657 AGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
492 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC----TA-GAATTTAC
**
4421722 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
552 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * ** * * ** *
4421787 TCTATCCACTGCTTGCGCATCCTGCCTCTCTGGCCGACGTAGTACTTGCCCGCCCGCCCGTTCGT
617 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCCAGCCCGC
* * * * *
4421852 TCGTTT-GATCGCTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAG
682 TCGTTTCG-TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
** * * * *
4421916 GGTTGTGGCAGCAAGATTGGCAGCACGCAGAGGGGGACCCTGTCGATCCCCGGCTTGCGCATCCC
746 GGTTACGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCC
* * * *
4421981 GCCCCTCTGGCTGGCTGAGCGCCCGTACGCTCGTTTCATGAGTTGACTTAGGCATACGGAG
811 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
** * * * * *
4422042 TTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGCACATGCTAGGCTCAGGCATG
1 TTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
** * * * * * * *
4422107 TGCTGGTGTTGCATTTTTCTTCGTCGGTGCAGCATCACTGGAGCATCGCCGAAGAACCTAACC-A
66 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGA
* * * *
4422171 GCGGCTTTGGGGTTCTGACGGTCGGGGGGTCCGAGGGGGT-TGCGCACATGATGTGCAATGGGTG
131 -CGGCATTGGGGTTCCGACGATCGGGGGG-CCG-GGGGGTGTGCGCACATGATGTGCGATGGGTG
* **
4422235 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCGAGAACTCACACCCTTTTA
193 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
4422300 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGATACT
258 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
4422365 TTTTTCAAATGGTCACAAAAT-TTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
323 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
4422429 ACAAAAATACAAGGATCACGTCTACCATGTTCGGGGCCAAAACTCCTTCCGAAAAAAATTTAAAA
388 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * * *
4422494 AATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTCCCATGAAA
453 AATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
4422559 CTTTACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-CATAAAAATGGCTTTGGCATGC
518 CTTCACGTGAAGGCTTAAGGGACC----TA-GAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * * *
4422623 AGAAATATGAGGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGTATCCCGCC
578 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* *
4422688 TCTCTGGCCGACGTAGTG--C--CCG--C-TC-GCCCGCTCATTTCGTCGGTTGGCTTAGGCATA
643 TCTCTGGCCGACGTAGTGCCCGTCCGCCCGCCAGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * *
4422745 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTAAGGTAGTAGGATCGACAGCACG
708 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACG
** * * *
4422810 CAGAGGGGGATGCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGTTGTGCGCCCGCA
773 CAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
*
4422875 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
838 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * * *
4422909 TTCATTCTCAGTCTAAGATTGGACCAGACCGAGGGTTGCGACAGCACCTGCTGGGCTCGGGCATG
1 TTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * * *
4422974 TGCTGGTGCCGCATTTTTCTTTGCCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAGCGA
66 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGA
* * *
4423039 C-GCATTGGGGTTCTGACGAT-GGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTA
131 CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
4423102 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
196 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * * * *
4423167 AGCATTTCAGATTTTATAGGTTGGCTGCCAGTAGCCATTAAAGTGTTTGGAATGGGGACACTTTT
261 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
4423232 TTCAAATGGTCACAAAATCTTGTACACTTTCGACTTTTGAGCTGAATGTTTTTGTGCATGCCAAC
326 TTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
4423297 AAAAATA-AGAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
390 AAAAATACA-AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * * * *
4423361 ATCCTGAATCGCAAAAAGTTTCAAAAATTGTGAAAAATAAAAAATGAGTCATCTTGCCATGAAAC
454 ATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
4423426 TTCACGTGAAGGCTTAAGGTA-C-A-AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
519 TTCACGTGAAGGCTTAAGGGACCTAGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * *
4423488 ATGAAGATGT-ACTGAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTTTCT
584 ATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* *
4423552 GGCCGACGTAGTGCCCGTCCGCCCGCCAGCCCGCTCGTTTCATCGGTTGGATTAGGCATACGGAG
648 GGCCGACGTAGTGCCCGTCCGCCCGCCAGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * ** * ** *
4423617 TTCATTCCCAGTCTAAGATCTGACCGGATCGAGGGTTGTGGCAGTAGGATCGGTAGCACGTAGAG
713 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAG
** * * * *
4423682 GGGGATACGGTCGATCCCCGACTTGCGCATCCCGCCCTTCTGGTCGGCTGTGCGCCCGCACGCTC
778 GGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
*
4423747 GTTTCATGGGTTGACTTAGGCATACGGAG
843 GTTTCGTGGGTTGACTTAGGCATACGGAG
* * *
4423776 TTCATTCTCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATG
1 TTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * *
4423841 TGCTGGTGCCGCATTTTTCTTAGCCAGGGCACCATCGCCGGAGCATCACCGGAGAACCTGAGCGA
66 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGA
** * * *
4423906 C-GCATTGGGGTTTTGACGATGGGGGGGTCGGGAGGGTGTGCGCACATGATGTGCGATGCGTGCT
131 CGGCATTGGGGTTCCGACGATCGGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * *
4423970 GGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAGACCTCAAGAACTCACACCTCCTTAAA
195 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * * * * * *
4424035 GTGCATTTGAGAATTTATAGGTTTGCTGCCATTAGCTATTAAAGTGTCTAAAATGGCGACAC-AT
260 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
4424099 TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG-ATTTGTTTTGTGCAGGCCAA
325 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTTGTGCATGCCAA
* * *
4424163 CAAAAATAGAAGGATCACGTCTACCAAGTTTGGGACCAAAACACCTTCCGAAAAAATTTTAAAAA
389 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * *
4424228 AT-CTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
454 ATCCT-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
4424292 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
518 CTTCACGTGAAGGCTTAAGGGACC----TA-GAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * * *
4424357 AAAAATATGAAGTTGTGCCAAAACCCTCCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
578 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * * * * *
4424422 TCTCTAGTCGTCGTAGTGCCTGTCTGCCTGCCCGCCCACTCATTTCGTCGGTTGGCTTAGGCATA
643 TCTCTGGCCGACGTAGTGCCCGTCCGCCCGCCAGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * * *
4424487 CGGAGTTCATTCCCAATCTAAGATTAGACCAGATCGAGGGTTGCAGCAGCAAGATC-AGCAGCAC
708 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGA-CAGCAC
* * ** * * * * **
4424551 GCAGAGGGGGACCTGATCGATCCCTAGCTTACGTATCCCGCCCCTCTGGGCGACTGAGCGCATGC
772 GCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
*
4424616 ATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
837 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
4424651 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC
1 TTCATTCCCAG--T---C-TA---AG---------A-T-T--G----GACCGGACCGAGGGTTGC
* * * *
4424716 AGCAGCACATGCTGGGCTCGGGCAAGTGCCGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCC
40 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC
* * * *
4424781 GGGGCATCCCCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTG
105 GGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTG
* *
4424846 TGCGCACATGATGTG-GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTTATCAA
169 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
** *
4424910 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGGAGTAGCCGT
234 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
4424975 TAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTT
299 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* ***
4425039 AGCTGAATGTTTTTGTGCATGCCAGTGAAAATACAAGGATCACAG-CTACCAAGTTTGGGGCCAA
364 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC-GTCTACCAAGTTTGGGGCCAA
* * * * * **
4425103 AAATCTTTCCGAAAAAATTTTAAAAAATCTTGAATCGCAAAAATTTTTGAAAATCGTGAAAAATA
428 AACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA
* *
4425168 GAAAACGAGTCATCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
493 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC----TA-GAATTTACA
* * * *
4425233 AGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGTTGTGCCAAAACCCTCCTACCACCCTAT
553 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * * * * *
4425298 CGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGTCGTAGTGCCTGTCTGCCTGCCCGCCCACT
618 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCCAGCCCGCT
* * * *
4425363 CGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGG
683 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG
* * * * * * ** *
4425428 TTGCAGCAGCAAGATC-AGCAGCATGCAGAGGGGGACCTGATCGATCCCTAGCTTGCGTATCCCG
748 TTACGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCG
*
4425492 CCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
812 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* *
4425552 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGCTGC
1 TTCATTCCCAGTCTAAG-AT--TG-G---A----C---C---G----GA-C---C-GAGGGTTGC
* * * *
4425617 GGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCGAATTTTTCTTCGTCGGGGCACCATCGTC
40 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC
* * * **
4425682 GGAGCATCATCGGAGAACCTAACCGGCGGCATTGGGGTTCCGGTGATCGGAGGGGCCGGGGGGGT
105 GGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCC-GGGGGGT
* * * ** *
4425747 GTGCGCACTTGATGTACTATGGGTGCTGGTACTTGGCCCTTATATTGGGGCCTTATCCCTCATCA
168 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
4425812 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
233 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
4425877 CTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
298 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* *
4425942 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAA
363 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * * *
4426007 AAATCCTTTC-AAAAATTTTTTAAAAAAT-CTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
428 AACTCCTTCCGAAAAA-ATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
* * * *
4426070 TTGAAAGCGAGCCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTA
491 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC----TA-GAATTTA
* * * ** *
4426135 CAAGCCATAAGAATGCCATTGGCATGTAGAAATATGAAGATGTGCCTAAACTAACTTACCACCCT
551 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * *
4426200 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGTCGTAGTGCGCC-CCCGCCCGCCCA-CC
616 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC-CCGTCCGCCCG-CCAGCC
* *
4426263 TGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCA
679 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
* * * ** * * *
4426328 AGGGATGCGGTAGCAATATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCAGCTGGCGCATC
744 AGGGTTACGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATC
* **** * *
4426393 TCGCCCCTCTGGCTATATGAGCG-CCGCATGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTT
809 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-T-----T----AG--
4426457 CATACCTAGTCTAAGCGTACGGAG
862 --------G-C--A---TACGGAG
** ** * * * *
4426481 TTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGCTACGGTAGCACATGCTGGGCTCGGTCATG
1 TTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * *
4426546 TGCTGGTGCCACATTTTTCTTCGAT-GGGGCACCATCGTCGGAGTATCGCCGGAGAACCTGACC-
66 TGCTGGTGCCGCATTTTTCTTCG-TCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCG
*
4426609 A-GTGCCATTTGGGTTCCGACGATCGGGGGGCC---GGG-G-G-G----TG-TGTG-G-TGGGTG
130 ACG-G-CATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
4426660 CTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTA
193 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
4426724 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACAGT
258 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
4426789 TTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTTTGCATGCCA
323 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
4426853 AAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCATT-TGAAAAAATTTTAAA
388 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAAAAATTTTAAA
* * * ** * * *
4426917 AAATCCCGAACTGTAAAAAGTTTTGAAAATCGTGAAACATAGAAAACGAGTCATCTTGCCAAGAA
452 AAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
4426982 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACT
517 ACTTCACGTGAAGGCTTAAGGGACC----TA-GAATTTACAAGCCATAAAAATGGCATTGGCA-T
4427047 -CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
576 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
4427111 TCTCTCTGG-C--C---G-G--CGT-AGCAC-CCA-CCCGCTCGTTTCGTCGGTTAGCTTAGGCA
641 TCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCCAGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
** * *** * *
4427164 TACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGTAGCAGGAGGATTGACAGCA
706 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCA
* * ** * ** * * * *
4427229 CACAGAGGGGGA-TCGACCGAGCCCCAACTTACGCATCCCACCCCTCTAGCCGGTTGAGCGCCCG
771 CGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* *
4427293 CACGTTCATTTCGTGGGTTGACGTAGGCATACGGAGTTCATTCCCAGACTAACCTTACGGAG
836 CACGCTCGTTTCGTGGGTTGAC-T-----T----AG----------G-C--A---TACGGAG
* *
4427355 TTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATG
1 TTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
*
4427420 TGCTGGTGCCGCA---TT-TT--T--------CAT---C---G--T---CGGAGAACCTGACCAA
66 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGA
* * * * * * * *
4427460 TGGCATTGAGGTTCCGGCGATCAGGGGGTCGGGGGGTGTGCACACATGATATGCAATGGGTGCTG
131 CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
4427525 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAG
196 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
4427590 AGCATTTGAGATTTTAGAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTT
261 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
4427655 TTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAA-TTTTTTATGCATGCCAACA
326 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* *
4427719 AAAATACAAGGATCACATCTACAAAGTTTGGGGCCAAAACTCCTTCC-AAGAAAATTTTAAAAAA
391 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA-AAAATTTT-AAAAA
** *
4427783 ATCCCAAACCGCAAAAAGTTTTAAAAATCGTGAAAAAT-GAAAAACGAGTCGTCTTGCCATGAAA
454 ATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAG-AAAACGAGTCGTCTTGCCATGAAA
* *
4427847 CTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGA
518 CTTCACGTGAAGGCTTAAGGGACC----TA-GAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
4427912 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTTGCGCATCCCGTC
578 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * *
4427977 TTTCTGGCCGTCGTAGTGCCCG-CACGCCCGCCCGCTCGCATC-TTTGGTCGGTTGGCTTAGGCA
643 TCTCTGGCCGACGTAGTGCCCGTC-CGCCCGCCAGCCCGC-TCGTTTCGTCGGTTGGCTTAGGCA
*** * * * * *
4428040 TATAAAGTTCATTTCCAGTCTAAGATCGGATCGGACCAAGGGTTACGGTAGCA
706 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCA
4428093 CATGCTGGGC
Statistics
Matches: 6055, Mismatches: 660, Indels: 446
0.85 0.09 0.06
Matches are distributed among these distances:
849 36 0.01
850 2 0.00
851 1 0.00
852 4 0.00
853 1 0.00
854 2 0.00
857 1 0.00
858 12 0.00
859 96 0.02
860 7 0.00
861 1 0.00
862 65 0.01
863 189 0.03
864 355 0.06
865 92 0.02
866 191 0.03
867 761 0.13
868 56 0.01
869 144 0.02
870 5 0.00
871 10 0.00
872 2 0.00
873 41 0.01
874 227 0.04
875 385 0.06
876 391 0.06
877 64 0.01
879 3 0.00
880 2 0.00
881 2 0.00
882 4 0.00
883 11 0.00
884 7 0.00
885 3 0.00
886 255 0.04
887 124 0.02
888 66 0.01
889 2 0.00
890 4 0.00
891 182 0.03
892 4 0.00
893 2 0.00
894 78 0.01
895 350 0.06
896 126 0.02
897 3 0.00
898 3 0.00
899 1 0.00
900 3 0.00
901 861 0.14
902 70 0.01
903 267 0.04
904 437 0.07
905 4 0.00
907 1 0.00
908 2 0.00
909 1 0.00
912 1 0.00
913 2 0.00
915 1 0.00
918 1 0.00
922 1 0.00
923 1 0.00
924 1 0.00
925 1 0.00
926 1 0.00
928 2 0.00
929 24 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (871 bp):
TTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGA
CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
CCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCTAGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
CGACGTAGTGCCCGTCCGCCCGCCAGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGGGG
GACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
TCGTGGGTTGACTTAGGCATACGGAG
Found at i:4424670 original size:26 final size:26
Alignment explanation
Indices: 4424641--4424693 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4424631 GTTGACTTAG
4424641 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4424667 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4424693 G
1 G
4424694 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4425578 original size:26 final size:26
Alignment explanation
Indices: 4425542--4425594 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4425532 GTTGACTTAG
4425542 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4425568 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4425594 G
1 G
4425595 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4426484 original size:26 final size:26
Alignment explanation
Indices: 4426448--4426497 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
4426438 GACTTAGGCA
*
4426448 TACGGAGTTCATACCTAGTCTAAGCG
1 TACGGAGTTCATACCCAGTCTAAGCG
*
4426474 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATACCCAGTCTAAG
4426498 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATACCCAGTCTAAGCG
Found at i:4429801 original size:26 final size:26
Alignment explanation
Indices: 4429764--4429816 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
4429754 GTTGACTTAG
4429764 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4429790 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
4429816 G
1 G
4429817 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4431579 original size:26 final size:26
Alignment explanation
Indices: 4431549--4431601 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4431539 GTTGACTTAG
*
4431549 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
4431575 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
4431601 G
1 G
4431602 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:4432466 original size:26 final size:26
Alignment explanation
Indices: 4432437--4432489 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4432427 GTTGACTTAG
4432437 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
4432463 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
4432489 G
1 G
4432490 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:4433307 original size:26 final size:26
Alignment explanation
Indices: 4433256--4433308 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
4433246 GTTGACTTAG
* **
4433256 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAACCTAA
*
4433282 GCATACGGAGTTCATTCCCAACCTAA
1 GCATACAGAGTTCATTCCCAACCTAA
4433308 G
1 G
4433309 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAACCTAA
Found at i:4434176 original size:26 final size:26
Alignment explanation
Indices: 4434140--4434192 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4434130 GTTGACTTAG
*
4434140 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
4434166 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
4434192 G
1 G
4434193 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:4435061 original size:26 final size:26
Alignment explanation
Indices: 4435024--4435076 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
4435014 GTTGACTTAG
* * *
4435024 GCATACGGAGTTCGTTACCAGTCTAA
1 GCATACGAAGTTCATTACCAATCTAA
*
4435050 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTACCAATCTAA
4435076 G
1 G
4435077 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTACCAATCTAA
Found at i:4435956 original size:26 final size:26
Alignment explanation
Indices: 4435919--4435971 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4435909 GTTGACTTAG
*
4435919 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
4435945 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
4435971 G
1 G
4435972 ATCAAACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:4436924 original size:904 final size:900
Alignment explanation
Indices: 4433198--4437716 Score: 5775
Period size: 884 Copynumber: 5.1 Consensus size: 900
4433188 ACTAATGGTT
* * * * * * *
4433198 GCATCTTGCCTCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTCATTGGTTGACTTAGGCATACA
1 GCATCCTGCCCCTATGGCCGTCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
* * **
4433263 GAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTCCCAACCTAAGATCGGACCAGACCGAGGGT
66 GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
** * *
4433328 TGCGGTGGCACATGCTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTCCGCCGGGGCACCATC
131 TGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC
*
4433393 ACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGCG
196 ACCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC--G-G
* * * * ** *
4433458 GGGGGGTGCGCACATGATGTACGATGGGTGCTGGTACTTGTCCCTTATAATATCCCCTTATCCCT
258 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
4433523 CATCAAACCTCGAGAACTCACACCCCCTTAACGAGCATTTGAGATTTTACA--------G---GT
323 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
4433577 -----TTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGA
388 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * **
4433637 TTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAA-GATCACGTCTATGAAGTTTGGG
453 GTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * *
4433701 GCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGCAAAAGGTTTCAAAAATTGTGAA
518 GCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAA
* * * *
4433766 AAATAAAAAACGAGTTGTCTTTCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAAT
583 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *
4433831 TTACAAGCCATAAAAATGGCATTGGCACTCAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
648 TTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * *
4433896 CCTATCGATCCAAGGCTTGCGCATCCTGTCTCTCTGGCAG-CGTAGTGCCCGCTC-AC-CCGCCC
713 CCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCGCCGCCT
** * * * *
4433958 GCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTACGATTGGACTGAACCGA
778 GCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGA
* * * * * *
4434023 GGGTTGTGGCAGCAAGATCT-GTAGCACGCATAGGGGGACCCGACCAATCCCCGACATGC
843 GGGTTGTGGCAGCAGGAT-TGGCAGCACGCAGAGGGGGACCCG-TCGATCCCCGACTTGC
* * * *
4434082 GCATCCCGCCCTTCTGGCCGGT-TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
1 GCATCCTGCCCCTATGGCC-GTCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
* * * * * *
4434146 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGATCGGACTGAGGG
65 GGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
* * * * **
4434211 CTGCGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTAGGG------
130 TTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCAT
*
4434270 ---C--AGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
195 CACCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
* * * * *
4434330 GGTATGAGCACATGAGGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCA
260 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
4434395 TCTAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAG
325 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * * *
4434460 CCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACACAATCTTATACAGTTCGAGT
390 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * **
4434525 TTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAGGTTTGGATC
455 TTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * *
4434590 CAAAACTCCTTCTAAAAAAATTTTAAAAAATCCCAAACCGTAAAATGTTTCAAAAATCGTTAAAA
520 CAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
* *
4434655 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACAATTGTATGAATTT
585 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
***
4434720 ACAAGCCATAAAAATGGCATTGGCAGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
650 ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
4434785 TATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CC--CG-C-CCT-C
715 TATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCGCCGCCTGC
* * * * * * * *
4434844 TTGTTTTGTCGGTTGGCTGAGGCGTACGGAGTTTATTCCCAATCTAAGATCAGACCAGATCGAGG
780 TTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGG
* * *
4434909 ATTGTGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCTGGCTGATCCCCGACTTGC
845 GTTGTGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGTC-GATCCCCGACTTGC
* * * * *
4434966 GCATCCCGCCCCTCTGGCCGACTGAGCGCCCACACGTTCGTTTCATGGGTTGACTTAGGCATACG
1 GCATCCTGCCCCTATGGCCGTCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
* * * ** * *
4435031 GAGTTCGTTACCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGGACTGGACCAAGGGA
66 GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
* * * * ** **
4435096 TGAGGCAGCACATGCT-GGGTCGGACATGTGCTGGTGCTGCATTTTTCTTTACCGAAGCACCATC
131 TGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC
* ** * * * *
4435160 ATCGGAGCATCGCCGGAGAACCTGATTGGA-GGCATTGTGGTTCC-ATCTATC-GGGGGGTCAGG
196 ACCGGAGCATCGCCGGAGAACCTGA-CCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGG
* * *
4435222 GGGTGTGCGCATATGACGTGCGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
259 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
4435287 ATCAAACCTTGAGAACTCA-ACCCCCTT-AAGAGCA-TTGAGATTTTACAGGTTTGCTGTCAGTA
324 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
4435349 GCCATTAAAGTGTCTGAAATGGGGACAGTTTTTTCAAAATTGGTCAC-AAATCTTGTA-ACTTCG
389 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC-AAA-TGGTCACAAAATCTTGTACACTTCG
* * * * *
4435412 AGCTTTTAAGCTGAATTTTTTTGTGCATGCCAACAAAAATATCAAGTATGACGTCTACCAAGGTT
452 AG-TTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATA-CAAGGATCACGTCTACCAA-GTT
* * *
4435477 TGGGGCCCAAACTCCTTCTGTAAAAATTTTTAAAAAATCCCGAACCGTAAAAAGTTT-TAAAAT-
514 TGGGGCCAAAACTCCTTCTG-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * * *
4435540 TTGAAAAATAGAAAATGAGTCATCATTGCCATG-AACTT-ACGTGAAGGCTTATGGGACCATTGT
578 GTGAAAAATAGAAAACGAGTCGTC-TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
4435603 ATGAATTTAAAAGTCATAAAAATGGGC-TTGGGCACACTAGTAAATATGAATGATGTGCCTAAAC
642 ATGAATTTACAAGCCATAAAAAT-GGCATT-GGCACAC-AG-AAATATGAA-GATGTGCCTAAAC
*
4435667 CCACCTACCACCCCTATCGATCCACTGGC-TGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCG
702 CCACCTACCA-CCCTATCGATCCAC-GGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCG
* * *
4435731 CCCG--ACCG-CT-C--GTTTCGT-GGATTGGCTTAGGCATACGGAGTACATTCTCAGTCTAAGA
765 CCCGTCGCCGCCTGCTTGTTTCGTCGG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * ** * *
4435789 TCAGACCGGACCAAGGGTTGTAGCAGCAACATTGGCAGCACGCAGAGAGGGACCCGACTGATCCC
829 TTAGACCGGACCGAGGGTTGTGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGTC-GATCCC
**
4435854 CGACTTAT
893 CGACTTGC
* * *
4435862 GCATCCTGCCCTCTA--GCCGGCTGAGCCCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATAC
1 GCATCCTGCCC-CTATGGCCGTCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
* *
4435925 GGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC-AAACAGGACCGAGG
65 GGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCA-GACCGAGG
* * *
4435989 GTTACGGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
129 GTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCA
* * * *
4436054 TCACCGGAGCATCGCCGGAGAACCTGATCGACGACATTAGGGTTCCGACGATCGGGGGGGTCGGG
194 TCACCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
*
4436119 GGATGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
259 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * * *
4436184 GTCAAACCTTGAGAACTCACAGCCCCTTAATGATCATTTGAGATTTTACAGGTTTGCTGCCAGTA
324 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * *
4436249 GCCATTAAAGTATCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG
389 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
4436314 TTTTTAGCTGAATTTTTTCT-TGCATGCCAAAAAAAAATACATGGATCACATCTACCAAGTTTGG
454 TTTTTAGCTGAATTTTTT-TATGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * *
4436378 GGCCGAAACTCCTTCTGAAAAAATTTCAAAAAATGCCGAACCTTAAAAAGTTTTC-AAAATCATG
517 GGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG-TTTCAAAAATCGTG
* *
4436442 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGTCTTAAGGGACCATTGTATGA
581 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * ** *
4436507 TTTTACAAGGCATAAAAATCACATTGGCACACAGAAATATGAACATGTGCCTAAACCCACCTACC
646 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
4436572 ACCCTATCGATCCACGGCTTGCGCATCCTGCCTCCCTGGCCGACGTAGTGCCCGCCCGTCTGCCT
711 ACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGTC-GCC-
* *
4436637 GCCTGCTTGTTTCGTCGGTTGGCTTAGGCATACGGACTTCATTCCCAGTCTAAGATTTGACCGGA
774 GCCTGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGA
** * * * *
4436702 CCGAGGGTTACGGTC-GTAGGATTGGCAGCACGCAGAGGGTGACCCAGTCGATCCTCGGCTTGC
839 CCGAGGGTTGTGG-CAGCAGGATTGGCAGCACGCAGAGGGGGACCC-GTCGATCCCCGACTTGC
* *
4436765 ACATCCTGCCCCTATGGCCGTCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
1 GCATCCTGCCCCTATGGCCGTCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
* *
4436830 GAGTTCATTCCCAGTCTAAGCTTATC-AAGCTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
66 GAGTTCATTCCCAGTCTAAGCATA-CGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
* * * * *
4436894 TTGCGACAGCACATGCTAGGCTCGGGCATGTGCTGTTGCTGCATTTTTCTTCGCCAGGGCACCAA
130 TTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCAT
* * * *
4436959 CATCGGAGCATCACCGGAGAACCTGACCGGCGGCTTTGGGGTTCCGACGATCGGGGGGGCCGGGG
195 CACCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
* *
4437024 GGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCA
260 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
4437089 TCAAACCTCGAGAACTCACACCCCC-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAAGTA
325 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC-AGTA
*
4437153 GCCA-TAAAGTGTCT-AAAAGGGGACACTTTTTTCAAATGGTCAC-AAATCTTGTACACTTCGAG
389 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
4437215 -TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGC
454 TTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * ** * *
4437279 CCAAAAATCCATCCCAAAAAATTTTTAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAA
519 CCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
* *
4437344 AGTAGAAAACGAGT-GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCTTTGTATGAATT
584 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *** *
4437408 TACAAGCCATAAAAATGGAATTGGCATGTAGAAATATGAAGATGTGTCTAAACCCACCTACCACC
649 TACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* *
4437473 CTATCGATCCACGGCTTGCGCATCCTGCCTCCCTGGCCGACGTAGTGCCCGCCCGTCTGCCTGCC
714 CTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCG--T--C-GCC
*
4437538 TGCCTGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTCGACCGG
774 -GCCTGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGG
** ** * * * *
4437603 ACCGAGGGTTACGGTTGTAGGATTGGCAGCACGCAGAGGGTGACCCAGTCGATCCTCGGCTTGC
838 ACCGAGGGTTGTGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCC-GTCGATCCCCGACTTGC
* * * *
4437667 ACATCCTGCCCCTATGGCCGTCTGAGCGCCAGCACGCTGGTTTCGTGGGT
1 GCATCCTGCCCCTATGGCCGTCTGAGCGCCCGCACGCTCGTTTCATGGGT
4437717 NNNNNNNNNN
Statistics
Matches: 3180, Mismatches: 357, Indels: 178
0.86 0.10 0.05
Matches are distributed among these distances:
870 104 0.03
871 1 0.00
873 53 0.02
875 1 0.00
881 2 0.00
883 34 0.01
884 384 0.12
885 3 0.00
886 97 0.03
887 232 0.07
888 11 0.00
890 67 0.02
891 98 0.03
892 63 0.02
893 119 0.04
894 82 0.03
895 192 0.06
896 254 0.08
897 135 0.04
898 222 0.07
899 191 0.06
900 149 0.05
901 19 0.01
902 209 0.07
903 144 0.05
904 310 0.10
905 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
GCATCCTGCCCCTATGGCCGTCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
TGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC
ACCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
TTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
AAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
ATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCGCCGCCTGCT
TGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGG
TTGTGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGTCGATCCCCGACTTGC
Found at i:4440317 original size:26 final size:26
Alignment explanation
Indices: 4440287--4440338 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
4440277 TGACTTACGC
*
4440287 ATACGGAGTTCATTCCTAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
4440313 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
4440339 TCAGACCGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:4440894 original size:894 final size:891
Alignment explanation
Indices: 4439425--4441049 Score: 2506
Period size: 894 Copynumber: 1.8 Consensus size: 891
4439415 TTAGGCATAT
* * * * * * *
4439425 GGAGTTCATTCCTAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGG
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGACAGCACATACTGGGCTCAGG
* ** * *
4439490 CATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGCTGGAGCATCACCGGAGAACCTGA
66 CATGTGCTGGAGCCGCATTTTTCTTCATCGGGGAACCATCGCTGGAGCATCACCGGAGAACCTAA
* * * **
4439555 CTGGTGGCATTGGGGTTCTGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
131 CCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
4439620 GCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTA
196 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTA
*
4439685 AAGAGCATTTGAGATTTTACAGGTTTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
261 AAGAGCATTTGAGATTTTACAGG-TTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* **
4439750 CTTTTTTAAATGGTCACAAAATCTTGTACTGTTCAAGTTTTTAGCTGAATGTTTTTGTGCATGCC
325 CTTTTTTAAATGATCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTGTGCATGCC
* * *
4439815 AACAAAAATACATGGATCATGTCTACCAAGTTTGGGGCCAATACTCCTTGCGAAAAAACTTTTAA
390 AACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTGCGAAAAAACTTTTAA
4439880 AAAATCCCGAACCGAAAAAAGGATAAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGA
455 AAAATCCCGAACCGAAAAAAGGATAAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGA
* *
4439945 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCATTGGCAC
520 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACAC
* * *
4440010 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTTGCACATCCCG
585 ACAGAAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCACATCCCG
** * * * *
4440075 TCTCTCTGGCC-AGCGTAGTGCCCGTTCGCCCGCTCGGTT-CATCGGTTGGCTTACGCATACGGA
650 TCTCTCTGGCCGA-CGTAGTGCCCGCCCGCACACTC-GTTCCATCGGTTGACTTACGCATACGAA
4440138 GTTCATTCCCAGTCTAAGATTGGACAAGACCGAGGGTTGTGGCAAGATCGGTAGCACGCAGAGGG
713 GTTCATTCCCAGTCTAAGATTGGACAAGACCGAGGGTTGTGGCAAGATCGGTAGCACGCAGAGGG
4440203 GGACCCGTACGATCCCCAACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGT
778 GGACCCGTACGATCCCCAACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGT
4440268 TTCATGGGTTGACTTACGCATACGGAGTTCATTCCTAGTCTAAGAATAC
843 TTCATGGGTTGACTTACGCATACGGAGTTCATTCCTAGTCTAAGAATAC
**
4440317 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGACAGCACATACTGGGCTGGGG
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGACAGCACATACTGGGCTCAGG
* *
4440382 CATGTGCTGGAGCCGCATTTTTCTTCATCGGGGAACCATCG-TCGGTGCATCGCCGGAGAACCTA
66 CATGTGCTGGAGCCGCATTTTTCTTCATCGGGGAACCATCGCT-GGAGCATCACCGGAGAACCTA
4440446 ACCGGCGGCATTGGGGTTCCGACGATCGGGGCGGCCGTGGGGGTTGTGCGCACATGATGTGCGAT
130 ACCGGCGGCATTGGGGTTCCGACGATCGGGG-GGCCG-GGGGG-TGTGCGCACATGATGTGCGAT
*
4440511 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCATACCC
192 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CC
4440576 CCTTAAAGAGCATTTGAGATTTTACAGG-TTTGCTGCCAGTAG-CATTAAAGTGTCTGAAATGGG
256 CCTTAAAGAGCATTTGAGATTTTACAGGTTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
4440639 GACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTTTTG
321 GACACTTTTTT-AAATGATCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAA-TGTTTTTGTG
* * *
4440704 CATGCCAATAAAAATTCAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAA-
384 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTGCGAAAAAAC
** * ** ** * * * *
4440768 TTTTAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCTTCTTG
449 TTTTAAAAAATCCCGAACCGAAAAAAGGATAAAAAATCATGAAAAATAAAAAACGAGTCGTCTTG
*
4440833 CCATGGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
514 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
4440898 TGACACACAGAAATATGAAGATCTGCCTAAACCCATCTACCACCCTATCGATCCACGGCTTGCGC
579 TGACACACAGAAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCAC
* * * *
4440963 ATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCACACTCGTTCCGTGGGTTGACTTAGGCATA
644 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCACACTCGTTCCATCGGTTGACTTACGCATA
4441028 CGAAGTTCATTCCCAGTCTAAG
709 CGAAGTTCATTCCCAGTCTAAG
4441050 CATACGGAGT
Statistics
Matches: 656, Mismatches: 68, Indels: 16
0.89 0.09 0.02
Matches are distributed among these distances:
891 1 0.00
892 137 0.21
893 40 0.06
894 301 0.46
895 147 0.22
896 30 0.05
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGACAGCACATACTGGGCTCAGG
CATGTGCTGGAGCCGCATTTTTCTTCATCGGGGAACCATCGCTGGAGCATCACCGGAGAACCTAA
CCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTAAATGATCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTGTGCATGCCA
ACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTGCGAAAAAACTTTTAAA
AAATCCCGAACCGAAAAAAGGATAAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACACA
CAGAAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCACATCCCGT
CTCTCTGGCCGACGTAGTGCCCGCCCGCACACTCGTTCCATCGGTTGACTTACGCATACGAAGTT
CATTCCCAGTCTAAGATTGGACAAGACCGAGGGTTGTGGCAAGATCGGTAGCACGCAGAGGGGGA
CCCGTACGATCCCCAACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTC
ATGGGTTGACTTACGCATACGGAGTTCATTCCTAGTCTAAGAATAC
Found at i:4441052 original size:26 final size:26
Alignment explanation
Indices: 4441023--4441075 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4441013 GTTGACTTAG
4441023 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
4441049 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
4441075 G
1 G
4441076 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:4441677 original size:737 final size:737
Alignment explanation
Indices: 4440222--4441787 Score: 2360
Period size: 737 Copynumber: 2.1 Consensus size: 737
4440212 CGATCCCCAA
* * * *
4440222 CTTGCGCATCCCGCCCCTCTGGCCGAC-T-GAG-C-GCCCGCACGCTCGTTTCATGGGTTGACTT
1 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCAC-CTCGTTTCGTGGGTTGACTT
* *
4440283 ACGCATACGGAGTTCATTCCTAGTCTAAGAATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
65 AAGCATACGGAGTTCATTCCCAGTCTAAGAATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * * *
4440348 ACCAAGGGTTACGACAGCACATACTGGGCTGGGGCATGTGCTGGAGCCGCATTTTTCTTCATCGG
130 ACCAAGGGTTACGACAGCACATACTGGGCTCGGGCAAGTGCTGGAGCCGAATTTTTCTTCACCGG
* * *
4440413 GGAACCATCGTCGGTGCATCGCCGGAGAACCTAACCGGCGGCATTGGGGTTCCGACGATCGGGGC
195 GGAACCATCGTCGGAGCATCGCCGGAGAACCTAACCGACGGCATTAGGGTTCCGACGATCGGGGC
*
4440478 GGCCGTGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
260 GGCCGGGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
4440543 CTATCCCTCATCAAACCTCAAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
325 CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTA
*
4440608 CTGCCAGTAGCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTAC
390 CTGCCAGTAGCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTAC
* * * * * *
4440673 ACTTCGATTTTTTAGCTGAATTTTTTTTTTGCATGCCAATAAAAATTCAAGGATCATGTCTACCA
455 ACTTCGAGTTTTTAGCTGAAATATTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCA
**
4440738 AGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTTGAAA
520 AGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAA
* * * *
4440803 ATCGTGAAAAATAGAAAATGAGTCTTCTTGCCATGGAACTTCACGTGAAGGCTTAAGGGACCATT
585 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATT
4440868 GTATGAATTTACAAGCCATAAAAATGGCATTGACACACAGAAATATGAAGATCTGCCTAAACCCA
650 GTATGAATTTACAAGCCATAAAAATGGCATTGACACACAGAAATATGAAGATCTGCCTAAACCCA
*
4440933 TCTACCACCCTATCGATCCACGG
715 CCTACCACCCTATCGATCCACGG
*
4440956 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCACACTCGTTCCGTGGGTTGACTT
1 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCAC-CTCGTTTCGTGGGTTGACTT
* * * *
4441021 AGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
65 AAGCATACGGAGTTCATTCCCAGTCTAAGAATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * * *
4441086 ACCTAGGGTTAC-AGCAGCACATGCTGGGTTCGGGCAAGTGCTGGTGCCGAATTTTTCTTCACCG
130 ACCAAGGGTTACGA-CAGCACATACTGGGCTCGGGCAAGTGCTGGAGCCGAATTTTTCTTCACCG
** * * * * * **
4441150 GGGCTCCATCGTCGGAGCATCGTCGGAGAACCTGATCGACGGCATTAGGTTTCTGGTGATCGGGG
194 GGGAACCATCGTCGGAGCATCGCCGGAGAACCTAACCGACGGCATTAGGGTTCCGACGATCGGGG
*
4441215 GGGCCGGGGGGGTT-TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
259 CGGCCGGGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
4441279 CCTATCCCTCATCAAACCT-AGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
324 CCTATCCCTCATCAAACCTCA-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
4441343 TACTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
388 TACTGCCAGTAG-CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTG
*
4441408 TACACTTCGAGTTTTTAGCT-AAATATTTTTGTGCATGCCAGCAAAAATACAAGGATCATGTCTA
452 TACACTTCGAGTTTTTAGCTGAAATATTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTA
* ** *
4441472 CCAAGTTTGGGGCCAAAACTCC-TTCTGAAAAAATTTTAAAAAATCCCGAACCGTGAAAGGTTTT
517 CCAAGTTTGGGGCCAAAAATCCTTTC-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTT
4441536 GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGAC
581 GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGAC
* * *
4441601 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAT
646 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGACACACAGAAATATGAAGATCTGCCTAAA
*
4441666 CCCACCTACCACCCTATCGATCCATGG
711 CCCACCTACCACCCTATCGATCCACGG
* * * * * * *
4441693 CTTGCGAATCCCGTCTCTCTAGCTGGCGAAGTGCCTGCCCGC-CCGTGCGTTTCGTTGGTTGGCT
1 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCACC-T-CGTTTCGTGGGTTGACT
* * *
4441757 CAAGCATACGGAGTTCATTTCCGGTCTAAGA
64 TAAGCATACGGAGTTCATTCCCAGTCTAAGA
4441788 TCAGACTGGA
Statistics
Matches: 748, Mismatches: 74, Indels: 17
0.89 0.09 0.02
Matches are distributed among these distances:
734 25 0.03
735 2 0.00
736 8 0.01
737 439 0.59
738 274 0.37
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (737 bp):
CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCACCTCGTTTCGTGGGTTGACTTA
AGCATACGGAGTTCATTCCCAGTCTAAGAATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
CCAAGGGTTACGACAGCACATACTGGGCTCGGGCAAGTGCTGGAGCCGAATTTTTCTTCACCGGG
GAACCATCGTCGGAGCATCGCCGGAGAACCTAACCGACGGCATTAGGGTTCCGACGATCGGGGCG
GCCGGGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTAC
TGCCAGTAGCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACA
CTTCGAGTTTTTAGCTGAAATATTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAA
GTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAA
TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGACACACAGAAATATGAAGATCTGCCTAAACCCAC
CTACCACCCTATCGATCCACGG
Found at i:4442697 original size:213 final size:214
Alignment explanation
Indices: 4442320--4442742 Score: 677
Period size: 213 Copynumber: 2.0 Consensus size: 214
4442310 AGTTTTTAGC
* * * *
4442320 TGAATTGTTTTGTGCATGCCAACAAAAATACAATGATCAGGTCTACCAAGTTTGGGGCCAAAATT
1 TGAATTGTTTTGTGCATGCCAACAAAAAGACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* *
4442385 CCTTATGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAA
66 CCTTACGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAA
* *
4442450 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
131 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCC
*
4442515 ATAAAAATGGCATTGCCAA
196 ATAAAAATAGCATTGCCAA
* *** *
4442534 TGAATT-TTTTGTGTATGCCATTGAAAAGACAAGGATCACGTCTACCAAGTTTGGGGCCATAACT
1 TGAATTGTTTTGTGCATGCCAACAAAAAGACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* *
4442598 CCTTCCGAAAAAATTTTAAAACATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAA
66 CCTTACGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAA
* *
4442663 ATGAGTCGTCTTGCCATGAAACTTCTCATGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCC
131 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCC
4442728 ATAAAAATAGCATTG
196 ATAAAAATAGCATTG
4442743 GCACGCAGAA
Statistics
Matches: 191, Mismatches: 18, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
213 185 0.97
214 6 0.03
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.26
Consensus pattern (214 bp):
TGAATTGTTTTGTGCATGCCAACAAAAAGACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTACGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAA
ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCC
ATAAAAATAGCATTGCCAA
Found at i:4444666 original size:26 final size:26
Alignment explanation
Indices: 4444630--4444682 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
4444620 GTTGACTTAG
*
4444630 GCATATGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCATTCCCTA-TCTAA
4444656 GCATACGGAGTTCATTCCCTATCTAA
1 GCATACGGAGTTCATTCCCTATCTAA
4444682 G
1 G
4444683 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCTATCTAA
Found at i:4446435 original size:26 final size:26
Alignment explanation
Indices: 4446399--4446451 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4446389 GTTGACTTAG
4446399 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
4446425 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
4446451 G
1 G
4446452 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:4446949 original size:886 final size:889
Alignment explanation
Indices: 4445528--4456597 Score: 9445
Period size: 892 Copynumber: 12.5 Consensus size: 889
4445518 GTCAACTTAG
* * * *
4445528 GCATACGGAGTTCATTCCTTGCCTAATATCAGACCGGACCCGAGGGTTGCAGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCTGTCTAAGATCAGACCGGA-CCGAGGGTTGCGGCAGCACATGCTGG
* *
4445593 GCTCGAGCATGTGTTGGTGCCATATTTTTCTTCGTCGGGACACCATCACCGGAGCATCGTTGGAG
65 GCTCGAGCATGTGTTGGTGCCATATTTTTCTTCGTCGGGGCA-C-T--CC-GAGCATCGCTGGAG
* *
4445658 AACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
125 AACCTGACCGA-CGCATTGAGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGT
4445723 ACGATGGGTG-TGGGTACTTA-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
187 ACGATGGGTGCT-GGTAC-TAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-GAGAACT
* * * *
4445786 CACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTATCTAA
249 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGA
* *
4445851 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTT
314 AATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
4445916 TTGTGCGTGCCAACAAAAATACAAGGATCACGTCTACCAAGTATGGGGCCAAAACTCCTTCCAAA
379 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTTCCGAA
* * * * *
4445981 AAAATTTTAAACAATCCTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGT
443 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
4446046 CTTGCCATGAAACTTCACGTGAAGCCTTAAGGTACCATTGTATGAATTTACAAGCCATAAAAACG
508 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
4446111 GCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATAGATCCACGACTT
573 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
4446176 GCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCG-CC-C-GCTCGTTTCGTCGGTTGGCTT
638 GCGCATCCCGTCTCTCTGGTCGACATAGTGCCCGCCCGCCCTCTGCTCGTTTCGTCGGTTGGCTT
* ** * * * *
4446238 AGGCATACGAAGTTCGTTCCCAGTCTAAGACCAGACTGGACCGAGGGTTGTGGTAGCAAGATCAG
703 AGGCATACGAAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGATCTGGCAACAAGATCAG
* * * *
4446303 CAGTAGGCAGTGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCACCTCTGGCCGG-TAGAG
768 CAGCAGGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCACACCTCTGGCCGGCT-GAG
* * * *
4446367 CACCTGCACG-TTCGTGTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
832 CACCCGCACGCTT-GTGTCATGGGTTGACTTAGCCATACAGAGTTCATTCCCAATCTAA
* * * *
4446425 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCTGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
4446490 CTCGATCATGTCTTGGTGCCACATTTTTCTTCATCGGGGCACTCGCGAGCATCGCCGGAGAACCT
66 CTCGAGCATGTGTTGGTGCCATATTTTTCTTCGTCGGGGCACTC-CGAGCATCGCTGGAGAACCT
* * *
4446555 GACCGACGCATTGAGGTTCCGACGATCGGGGGGCCGGGGTGTG-GCGCACATGATGTGCAATGGG
130 GACCGACGCATTGAGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTACGATGGG
*
4446619 TGCTGGTACTAGGACCTTATATTGGCCCCCTATCCCTCATCAAAACCTGAGAACTCACA-CCCCT
195 TGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTGAGAACTCACACCCCCT
*
4446683 TAAAGAGC-TTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTTTGAAATAGGGAAC
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATAGGG-AC
* *
4446746 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTGTTTAGCTGATTTTTTTTTGTGCAT
323 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTTGTGCAT
*
4446811 GCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCAAAACTCCTTCCGAAAAAATTTTA
387 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCCGAAAAAATTTTA
* * * *
4446876 AAAAATCCCGAACCGCAAAAAGGTTT-GAAAATCATGAAAAATAGAAAACGGGAT-GCCTTGCCA
452 AAAAATCCCGAACCGTAAAAA-GTTTCAAAAATCATGAAAAATAGAAAACGAG-TCGTCTTGCCA
*
4446939 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
515 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
4447004 CACGCAGAAATCA-GAAGATGTGCCTAAACCCACCTACCACCCTATCGGTCCACGGTTTGCGCAT
580 CATGCAGAAAT-ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
4447068 CCTGTCTCTCTGGTCGACATAGTGCCCGCCCGCCCGTTCGTTTGCTCGTTTTGTCGGTTGGCTTA
644 CCCGTCTCTCTGGTCGACATAGTGCCCGCCCGCCC--TC---TGCTCGTTTCGTCGGTTGGCTTA
* * * * * * *
4447133 GGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCAGACTGAGGGATCTGGCAACAGGATCGGT
704 GGCATACGAAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGATCTGGCAACAAGATCAGC
* * * * * *
4447198 AGCATGCAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCACCCCTTTTGCTGGCTGAGCA
769 AGCAGGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCACACCTCTGGCCGGCTGAGCA
* *
4447263 CCCGCACGCTTGTTTCATGGGTTGACTTAGCCATACAGAGTTCATTCCCAATGTAA
834 CCCGCACGCTTGTGTCATGGGTTGACTTAGCCATACAGAGTTCATTCCCAATCTAA
* *
4447319 GCATACGGAGTTCATTCCCTGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCTGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
4447384 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTC-GGG-A---C-ACCATCACTGGAGAACCTG
66 CTCGAGCATGTGTTGGTGCCATATTTTTCTTCGTCGGGGCACTCCGAGCATCGCTGGAGAACCTG
4447443 ACCGACGGCATT-AGCGTTCC-AGCGATCGGGGGGCTCGGGGGGTGTGCGCACATGATGTACGAT
131 ACCGAC-GCATTGAG-GTTCCGA-CGATCGGGGGGC-CGGGGGGTGTGCGCACATGATGTACGAT
* * *
4447506 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTTTAGAACTCACACCC
192 GGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TGAGAACTCACACCC
* *
4447571 CCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTATGAAATAGGG
256 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATAGGG
* *
4447636 ACACTTTTTTCAAATGGTCAAAAAATCTTGTACAC-TCTGAGTTTTTAGGTGAATTTTTTTGTGC
321 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTGTGC
* * ** * *
4447700 ATGCCAACAAAAATACAAGGATTATGTCTACCAAGTTTGGCACCAAAAATCCTTCTGAAAAAATT
385 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG-GGCAAAACTCCTTCCGAAAAAATT
* *
4447765 TTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCC
449 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
4447830 ATGAAACTTCACGTGACGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTG
514 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * *
4447895 GAACAT--AGAAATATGAAGATTTGCCTAAACCAACCGACCACCCTATCGATACACGGCTTGCAC
579 G--CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * ***** * ** ***
4447958 ATCCCATCTCTCTGGCCGGCGTTCA-TTCCCAGTCTAAGATCAGAC-CAG-ACCAAGGGTT-G--
642 ATCCCGTCTCTCTGGTCGAC-AT-AGTGCCC-GCCCGCCCTCTG-CTC-GTTTCGTCGGTTGGCT
* * ** *
4448017 T-GGCAGTA-G--G---A-T--C-GGC--AG--CATG--CAGA--GGGGGA-CCCG-ATC--GAT
702 TAGGCA-TACGAAGTTCATTCCCAGTCTAAGACCA-GACCAGACCGAGGGATCTGGCAACAAGAT
* ** * * ** * * * *
4448059 C--C--CCGGC--TTGCGCATCCCG-CCCCTCTGGCCGACTGA-GCA-CCCACACGCT-TGTTTC
765 CAGCAGCAGGCAGAGGGGGA-CCCGACCGATC--CCCGGCTTACGCATCCCACAC-CTCTG--GC
* * ** ** ** ***** * * *
4448114 ATGGGTTGA-CTTAGGCTTACG-GAGT-TCATTCCCAGTCTAAG-CATACGGAGTTCATTCCC-A
824 --CGGCTGAGC--ACCCGCACGCTTGTGTCATGGGTTGACTTAGCCATACAGAGTTCATTCCCAA
*
4448174 -GT--
885 TCTAA
* * * *
4448176 -C-TA---AG---A---------T----T-AGACCAGACCGAGGGTTGCAGCAACACAAGCTGGG
1 GCATACGGAGTTCATTCCCTGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * * * *
4448219 CTCGGGCAT-TGTTGGTGCCGCATTTTTCTTCATCGGGGAGCCATTGCAGGAGCATCACCGGAGA
66 CTCGAGCATGTGTTGGTGCCATATTTTTCTTCGTC-GGG-G-CACT-C-CGAGCATCGCTGGAGA
* *
4448283 ACCTGACC-AGCGTCTTTGGGGTTCCGACGATCGGGGGGGCCGGGAGGGGTGTGCGCACATGATG
126 ACCTGACCGA-CG-CATTGAGGTTCCGACGATC-GGGGGGCC-GG-GGGGTGTGCGCACATGATG
* ** * * *
4448347 TGCGATGGGTGCTATTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAGCCTCGAGAACTC
186 TACGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-GAGAACTC
*
4448412 ACACCCCCTTAAAGA--ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
250 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAA
*
4448475 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
315 ATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * *
4448540 TGTGCACGCCAATAAAAATACAAGGATCATGTCTGCCAAGTTTGGGGCTAAAACTCTTTCTGAAG
380 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-AAAACTCCTTCCGAAA
* *
4448605 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC
444 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * ** *
4448670 TTGCCATGAAACTTCACGAGAAGGATTAAGGGACCATTGTACAAATTTACAAGCCATAGAAATGG
509 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
4448735 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTA
574 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
4448800 CGCATCCCGTCTCTCTGG-CCAGCGTAGTGCCCGCCC-ACC-C-GCTCGTTTCGTCGGTTGGCTT
639 CGCATCCCGTCTCTCTGGTCGA-CATAGTGCCCGCCCGCCCTCTGCTCGTTTCGTCGGTTGGCTT
* * * * * ** * * * * * * **
4448861 AGGCAGATGGAGTTCATTCCTAGTCTAAGATCAGACCAGATTGAGGGTTGTGACGATAGGATTGG
703 AGGCATACGAAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGATCTGGCAACAAGATCAG
* * * ** * *
4448926 CAGCATGCAGAGGGGGACCCGATCGATCCTCGATTTACACATCCCAC-CCTTATGGCCGGCTGAG
768 CAGCAGGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCACACC-TCTGGCCGGCTGAG
* * * * * * * *
4448990 CACCCACACGCTCGTTTCGTGGGTTGACTTAGGCACACGGAGTTCATTCCCTATCTAA
832 CACCCGCACGCTTGTGTCATGGGTTGACTTAGCCATACAGAGTTCATTCCCAATCTAA
* ** * * * *
4449048 GCATACAGAGTTCATTTCCAAG-CTAAGATCGGACCAGACTGAGGGTTGCGACAGCACATGCTGG
1 GCATACGGAGTTCA-TTCCCTGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* ** *
4449112 GCTCGGGCATGTGTT-GTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGAAGCATCACTGGAG
65 GCTCGAGCATGTGTTGGTGCCATATTTTTCTTCGTCGGGGCA-C--T-CCG-AGCATCGCTGGAG
* * *
4449176 AACCTGACCGATGCTATT-AGGGTTCCGACGATCGGGGGGCCGAGAGGGGTGTGTGCACATGATA
125 AACCTGACCGACGC-ATTGA-GGTTCCGACGATCGGGGGGCCG-G-GGGGTGTGCGCACATGATG
* * * * * * *
4449240 TGCAATGGGTGCTGATACTTGGCCCTTACATTGGCCCTCTATCCCTCGTCAAACCTTGAGAACTC
186 TACGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TGAGAACTC
* * * *
4449305 ACACTCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCCATTAAAGTGTCTGAA
250 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAA
* * * * * *
4449370 ATGGGGACACATTTTTCAAATGATCACAAAATCTTGGACACTTCGAGTTTTTCGCTGAATTGTTT
315 ATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * ** *
4449435 TGTGCATGCCTACAACAATACAAGGATCACGTCTACCAAGTTAAGGCCAAAA---C-TCC-----
380 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCCGAAAA
*
4449491 -----T------T-CC-AA----AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCG
445 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
4449539 TGCCATGATACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
510 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
4449604 ATTGGCATGCAGAAATATGAGGATGTGCCCAAACCCACCTACCACCCTACCGATCCACGGCTTGT
575 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
4449669 GCATCCCTTCTCT-TCGG-CGGCGTAGTGCCCGCTCGCCTGCCCGCCCGCTCGTTTCGTCGGTTC
640 GCATCCCGTCTCTCT-GGTCGACATAGTGCCCG--C-CC-GCCC-TCTGCTCGTTTCGTCGGTTG
* * * ** *** * * * *
4449732 GCTTAGGCATACGGAGTGCATTCCCAGTCTAAGATCAGACTGGATTAAGGGTTGC-GGTAGCAGG
699 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGAT-CTGGCAACAAG
* * * * * ** * * * * * *
4449796 ACCGGTAGCACGCAGAGGGGAACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGAC
763 ATCAGCAGCAGGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCACACCTCTGGCCGGC
* * *
4449861 TGAGCACCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
828 TGAGCACCCGCACGCTTGTGTCATGGGTTGACTTAGCCATACAGAGTTCATTCCCAATCTAA
* * * * * *
4449923 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGGTAGTACATGCTGGG
1 GCATACGGAGTTCATTCCCTGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
4449988 CTCGAGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATTGCCGGAGA
66 CTCGAGCATGTGTTGGTGCCATATTTTTCTTCGTCGGGGCA-C-T--CC-GAGCATCGCTGGAGA
* * * * * * * * *
4450053 ACCTAACCGGCGGCATTG-GGATTCTGGCTATCAGGGGGCCGAGGGGTGTGTGCACATGATGTGC
126 ACCTGACCGAC-GCATTGAGG-TTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTAC
* *
4450117 GATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC-CACA
189 GATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-GAGAACTCACA
* *
4450181 CCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCCATTAAAGTGTTTGAAAT
253 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CCATTAAAGTGTATGAAAT
* * ** *
4450246 GGGGACACCTTTTTCAAAT-GTCACAAAATCTTGTACACTTATAG-TTTAAGCTGAATTTTTTTG
317 AGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
4450309 TGCATGCCAA-AAAAATACAAGGATCACCTCTACCAAGTTTGGGGACAAAACTCCAT-CGAAAAA
382 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTTCCGAAAAA
* * * * *
4450372 ATTTTAAAAAAATCCCGAACCGCAAAAATTTTCAAAAATCATTAAAAATAGAAAATGAGTCATCT
446 ATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
4450437 TGCCATGAAACTTCACGTGAATGCTT-AGGGACCATTGTATGAA-TTACAAGGCCATAAAAATAG
510 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA-GCCATAAAAATGG
*** * *
4450500 CATTGGCACATAGAAATATGAAGATGTGCCTAAAACCACCTACCACCCTATCGGTCCACGGCTTG
574 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * * *
4450565 CGCATCTCGTCTCCCT-GCCG-CGTAGTGCCTGCCTGCCCGTCCGTTCGTTTCATCGGTTGGCTT
639 CGCATCCCGTCTCTCTGGTCGACATAGTGCCCGCCCGCCC-TCTGCTCGTTTCGTCGGTTGGCTT
* * * *
4450628 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CGAGGG-T-TGCGCAGCAGAGGAT
703 AGGCATACGAAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGATCTG-GCAACA-A-GAT
* * * * ** * **
4450690 GCAGCA-CA--CAGA-GGGGACCTGATCGATCCCCTGCTTGCGCATCCTGCCCCTCTGGCCGATT
765 -CAGCAGCAGGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCACACCTCTGGCCGGCT
* * * * *
4450751 GAGCACCCGCACG-TTCATTTCGT-GGTTGACTTAG-CATACGGAGTTTCATTTCCCAGTCTAA
829 GAGCACCCGCACGCTT-GTGTCATGGGTTGACTTAGCCATACAGAG-TTCA-TTCCCAATCTAA
* * * * * *
4450812 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACTGAGGG-TGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCTGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
4450876 ATCGGGCATGGGTTGGTAGCCATATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATC-ATCGAA
66 CTCGAGCATGTGTTGGT-GCCATATTTTTCTTCGTCGGGGCA-C-T--CC-GAGCATCGCT-G--
* * * * * * *
4450940 AAAAACGCCTGACCGGCGGCATTTGGGGTTCCGGCAATCGGGGGGCC--GGTGTGTGCGCACATG
122 GAGAA--CCTGACCGAC-GCA-TTGAGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATG
* *
4451003 ATGTGC-ATGGGTGCTGGTACT-TGCCCTTATATTGGCCCCCAATAATCCCTCATCAAACCTCG-
183 ATGTACGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCC--T-ATCCCTCATCAAACCT-GA
*
4451065 GAGACTCACACCCCCTTAAAGAGCATTTGAGCTTTTACAGGTTTTGCTGGCCGAGTAAGCCATTT
244 GA-ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTGCT-GCC-AGT-AGCCA-TT
* *
4451130 AAAGTGTCTGAAAATGGGGACACTTTTTTCAAATGGTCACCAAAATCTTGTACACTTCGAGTTTT
303 AAAGTGTATG-AAATAGGGACACTTTTTTCAAATGGTCA-CAAAATCTTGTACACTTCGAGTTTT
*
4451195 TAGCTTGAATTTTTTTTGTTGCATGCCAACAAAAATACAAGGATCACCATCTACCAAGTTTGGGG
366 TAGC-TGAA-TTTTTTTG-TGCATGCCAACAAAAATACAAGGATCA-CGTCTACCAAGTTTGGGG
* * *
4451260 CAAAAATACCTTCTTGAAAAAATTTTTAAAAAGTCCCCGAACCGTAAAAAGTTTCAAAAAATCAT
427 CAAAACT-CCTTC-CGAAAAAA-TTTTAAAAAAT-CCCGAACCGTAAAAAGTTTC-AAAAATCAT
* * *
4451325 GAAAAATTAG-AAACGAGTCGTCCTTGCCATGAAACTTCACGTGAATGCTTAGGGGAACATTGTA
487 GAAAAA-TAGAAAACGAGTCGT-CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* ** *
4451389 TGAATTTACAAGCCATAAAAATAGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCAACCT
550 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * * *
4451454 ACCACCCTATCGAACCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCG
615 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACATAGTGCCCGCCCGCCC-
* * * * * *
4451519 TCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGATCAGACCGGAC
679 TCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGACCAGACCAGAC
* * * * * * ** ** **
4451584 CGAGGGTTGTGGCATCAGGATC-GACAGCACGTAGAGGGGGACCCGATTGATCCCTAGCTTGTGC
744 CGAGGGATCTGGCAACAAGATCAG-CAGCAGGCAGAGGGGGACCCGACCGATCCCCGGCTTACGC
* * * * * *
4451648 ATCCCGCCCCTCTGGTCGGTTGAGCACCCGTACGC-----TC----G-T---TT---CGT--AG-
808 ATCCCACACCTCTGGCCGGCTGAGCACCCGCACGCTTGTGTCATGGGTTGACTTAGCCATACAGA
* *
4451694 GTTGA----C--T-TAG
873 GTTCATTCCCAATCTAA
* * * * * *
4451704 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTTCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCTGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * *
4451769 CTCGGGCATGTGTTGGTGCCGCATTTATCTTCGTTGGGGCACCATCGTCGGAGGATCG-TCGGAG
66 CTCGAGCATGTGTTGGTGCCATATTTTTCTTCGTCGGGGCA-C-TC--C-GAGCATCGCT-GGAG
** * *
4451833 AACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
125 AACCTGACC-GACGCATTGAGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTA
** * *
4451898 CGATATGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCGAGAACTCAC
188 CGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-GAGAACTCAC
*
4451963 ACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
252 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAAT
* *
4452027 GGGGACACTTTTTTCAAAGGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
317 AGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* **
4452092 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTAGGGGCCAAAACTCCTTCTAAAAAA
382 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTTCCGAAAAA
* * * * *
4452157 ATTTTAAAAAATCTCGAATCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAAATGAGTCGTCT
446 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT-AGAAAACGAGTCGTCT
* * *
4452222 TGCCATGAAACTCCATGTGAAGGCTTAAGGGGACCATTGTATGAATTTACAAGCCATAAAAATTG
510 TGCCATGAAACTTCACGTGAAGGCTTAA-GGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** * *
4452287 CATTGGAACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTG
574 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
4452352 CGCATCTCGTCTCTTTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCACGCTCGTTTCGTCGGTTG
639 CGCATCCCGTCTCTCTGGTCGACATAGT----GCCCGCCCGCCCTC-TGCTCGTTTCGTCGGTTG
* * ** * * ** *
4452417 GCTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGATCAGACCGGACAAAGGGTTGTGGCAGTAGG
699 GCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGATCTGGCAACAAG
** * **** ** ** * * *
4452481 ATTGGTAGCTCATAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGTCGGT
763 ATCAGCAGCAGGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCACACCTCTGGCCGG-
* * * ** * * * *
4452546 TTGAGCACCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTAATCTAA
827 CTGAGCACCCGCACGCTTGTGTCATGGGTTGACTTAGCCATACAGAGTTCATTCCCAATCTAA
* * * * * * *
4452609 GCATATGGAGTTCATTCCCAGTCTAACATCAGATCGGATCAAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCTGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** *
4452674 CTC-AGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAG
66 CTCGA-GCATGTGTTGGTGCCATATTTTTCTTCGTCGGGGCA-C-T--CC-GAGCATCGCTGGAG
** * **
4452738 AACCTGATCCGTGGCATTGGGGTTTTGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
125 AACCTGA-CCGACGCATTGAGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGT
** * * * *
4452803 GTGATGGGTGCTAGCACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTAGAGAACTCA
187 ACGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-GAGAACTCA
* * * *
4452868 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTTCAAGTAGCCATTACAAGTGTCTGAA
251 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA-AAGTGTATGAA
* * ***
4452933 AT-GGGACAC--TTTT--AAGGGTCAC--AA----GTACACTTTGAG------GC--AATACCTT
315 ATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * **
4452979 TGTGCA---C-GC---AATCCAAGGATCAC--CTACCAA---TGCGG--AAACTCCTTCAAAAAA
380 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCCGAAAA
* * * * *
4453030 AATTCTAAAAAAAT-CTGACAACCGT-AAAAGTTTCAAAAATCGTGACAAATAG--AACGAGCCG
445 AATT-TTAAAAAATCCCG--AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
4453091 -CTTGCCATGAAA-TTCACGTG--GGCTT-A---ACCATTGTCTGAATTTACAAG-CATGAAAAT
507 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
4453147 TGCATTGGC-TTCAGAAATATGAAG-TGT-ACTAAACCCACCTA-TACCCTATCAATCCACGGCT
572 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * ** *
4453208 T-CGACGTCCCGTCTCTCTGGCCGGCGATA-TGCCGGCCCCGCCCCCACCT-G-TTCGT-GATTG
637 TGCG-CATCCCGTCTCTCTGGTCGAC-ATAGTGCCCG-CCCGCCCTCTGCTCGTTTCGTCGGTTG
* * * * * * **
4453268 GCTTA--AATAC-ATGTTC--TCCCAATCTAAGATCAGACC-GAACC-AAGG--CCGGCAGTAAG
699 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGACCAGACCAG-ACCGAGGGATCTGGCAACAAG
* * * ** * * *** * * *
4453324 ATCAGTAGCCA--AAGAGAGTAACCC-AGCCGAGCCCCGGCTTGCGCATCTTGCCCCTTTGGCCA
763 ATCAGCAG-CAGGCAGAGGGGGACCCGA-CCGATCCCCGGCTTACGCATCCCACACCTCTGGCCG
* * * * * * * ** * * *
4453386 GTTGAGCACGCACACGCTCGTTTCGTTGGTTGACTTAGGGATACGGTGTTCATTCCCAGTCTAA
826 GCTGAGCACCCGCACGCTTGTGTCATGGGTTGACTTAGCCATACAGAGTTCATTCCCAATCTAA
** * * *
4453450 GCATACGGAGTTCATT-CCTAGTCTAAGATTGGATCGGACCGAGGGTTGCCGCAGCACATCCTGG
1 GCATACGGAGTTCATTCCCT-GTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * * *
4453514 GCTCGGGCTTGTGTTCGTGCCGTATTTTTCATCGCCAGGGCACAATTGCCGGAGCATCG-TCGGA
65 GCTCGAGCATGTGTTGGTGCCATATTTTTCTTCGTCGGGGCAC---T-CC-GAGCATCGCT-GGA
** * * *
4453578 GAACCTGACCGGTGGCATTGGGGTTCTGATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
124 GAACCTGACC-GACGCATTGAGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATG
** * *
4453643 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTC
186 TACGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-GAGAACTC
* * * * *
4453708 ACACCCCCTTAAAGAGCATGTGAGATTTTATAGGTTTGCTGCCAGGAGCCATTAAAGTGTCTAAA
250 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAA
* * * * *
4453773 ATGGGGACACATTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTCGCTGAATTGTTT
315 ATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * ** *
4453838 TGTGCATGCCTACAACAATACAAGGATCACGTCTACCAAGTTAAGGCCAAAA---C-TCC-----
380 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCCGAAAA
** *
4453894 -----T------T-CC-AA----AAAAAGTTTCAAAAATCATGAAAAATAGAAAATAAGTCGTCG
445 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
4453942 TGCCATGATACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
510 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
4454007 ATTGGCATGCAAAAATAAGAAGATGTGCCT-AA---ACCTACCACCCTATCGATCCACGGCTTAC
575 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** * *
4454068 GCATCCCGCCTCTCTGGTCGATGTAGTGCCCGCCCG-CC-C-GTTCGTTTCGTCGGTTGGCTTAA
640 GCATCCCGTCTCTCTGGTCGACATAGTGCCCGCCCGCCCTCTGCTCGTTTCGTCGGTTGGCTTAG
* * *** ** * * * * * ** *
4454130 GCATGCGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCAACGGTTGTGGTAGTAGGATC-GAC
705 GCATACGAAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGATCTGGCAACAAGATCAG-C
* * * * * * *
4454194 AGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTATGTATCCCTGCCCCGTCTGGCCTGCTGAG
769 AGCAGGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCC-ACACC-TCTGGCCGGCTGAG
* * * * * *
4454259 CACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
832 CACCCGCACGCTTGTGTCATGGGTTGACTTAGCCATACAGAGTTCATTCCCAATCTAA
* * * * * *
4454317 GCATACGGAGTTCATTTCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAAATACTGGG
1 GCATACGGAGTTCATTCCCTGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *** *
4454382 CTCGGGCATGTGGTGGTGTCGTATTTTTCTTCGTCGGGGCA--AC-ATCATCGAAAGA-AACCTT
66 CTCGAGCATGTGTTGGTGCCATATTTTTCTTCGTCGGGGCACTCCGAGCATCGCTGGAGAACCTG
** * * *
4454443 ACCGGGTGGCATTGAGGTTCCGGCGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGG
131 ACC--GACGCATTGAGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTACGATGG
* * *
4454508 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCACACCCAC
194 GTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TGAGAACTCACACCCCC
* * * *
4454573 TTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCAAGTAGCCATTAAAGTGTCTGAAATGGGGAC
258 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATAGGGAC
* * * * *
4454638 ACGTTTTTCAAATGGACACAAAAGCTTGTACACATCGAGGTTTTAGCTGAATTTTTTTTGTGCAT
323 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCAT
* * ** * *
4454703 GCCAACAAAAAATTACAAGGATAATGTCTACCAAGTTTGAAGCAAAAACTCCTTCTGAAAACATT
387 GCCAAC-AAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGC-AAAACTCCTTCCGAAAAAATT
* *
4454768 TTAAGAAATCCCGAACCGTAAAAAGTTTCAAAAAT-GTGAAAAATAGAAAACGGAGTCGTCTTGC
449 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC-GAGTCGTCTTGC
*
4454832 CATGAAACTTCACGTGAAGGGCTTAAGGGACCATTGTATGAATTTACATG-CATAAAAATGGCAT
513 CATGAAACTTCACGTGAA-GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
4454896 TGGCTTGCTAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCACTTATCGATCCATCGGCT
577 TGGCATGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCAC-C-C-TATCGATCCA-CGGCT
* * * * * * * * * *
4454961 TGTGCATCCCATCTCTATGGCCGGCCGTAGTGCCTGCCTGCCCGCCCGTCCGTTCTTTTTTGTC-
637 TGCGCATCCCGTCTCTCTGGTC-GACATAGTG-C--CC-GCCCGCCC-TCTGCTC-GTTTCGTCG
* * ** * * *
4455025 GTTGGCTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGGTCAGGACTGA-GGTTGTGGCA
695 GTTGGC-TTAGGCATACGAAGTTCATTCCCAGTCTAAGACCAGACCA-GACCGAGGGATCTGGCA
* * * ** * * *
4455089 GCAGGATCAGGTTAGCACGTTAGAAGGGGGACCCGATCGATCCCCGGCTTGGCACATCCCAC-CC
758 ACAAGATCA-G-CAGCA-GGCAG-AGGGGGACCCGACCGATCCCCGGCTT-ACGCATCCCACACC
** ** ** * ** * * *
4455153 TCTAGTTCAACTGAGCGTCCGCCATGCCCGTTTCATGGGTCGTTGACTTAGGCATACTGAGTTCA
818 TCT-GGCCGGCTGAGCACCCG-CACGCTTGTGTCAT-GG--GTTGACTTAGCCATACAGAGTTCA
*
4455218 TTCCCAGTCTTAA
878 TTCCCAATC-TAA
* * * * *
4455231 GCATACGGAGAGTTCATTTCCCAGGTCTAGGATCGGACTTGGACCGAGGGTTGTGGCCAGCCACA
1 GCATAC-G-GAGTTCA-TTCCC-TGTCTAAGATCAGAC-CGGACCGAGGGTTGCGG-CAG-CACA
* * ** ** * *
4455296 TGCTAGGCTC-AG-GTGTCCTGGTGCCGCATTTTTCTTCGTCAGGGCACCACCGTCGTAGCATCG
59 TGCTGGGCTCGAGCATGTGTTGGTGCCATATTTTTCTTCGTCGGGGCA-C-TC--CG-AGCATCG
* *
4455359 -TCGGAGAACCTGACC-ATCGGCGTT-AGGGTTCCAACGATCGGGGGGGCCGGGGGGGGTGTGCG
119 CT-GGAGAACCTGACCGA-C-GCATTGA-GGTTCCGACGATC-GGGGGGCC--GGGGGGTGTGCG
* * *
4455421 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCT
177 CACATGATGTACGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
4455486 CAAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAG
242 -GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * * * *
4455551 GTGTCTGAAATGGGGACACTTTTTTAAAATGGTCACAAAATCTTGTACACTTTGAGTTCTTAGCT
306 GTGTATGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* **
4455616 GAATTTTTTTATGCATGCCAACAAAAATACCGGGATCACGTCTACCAAGTTTGGGGGCAAAACT-
371 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCAAAACTC
* * * * **
4455680 CTTTCGAAAAAATTTTAAAAAATTCTGAAGCAAAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
435 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* *
4455745 CGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCA
500 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * *
4455810 TAAAAATGGCATTGGCATGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCGTATAGATC
565 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * *** * * *
4455875 CACGGCTTGCGCATCCCATCTCTCTGGCCGGTGTAGTGCTCGTCTGCCTGCCCGCCTGCTCTTTT
630 CACGGCTTGCGCATCCCGTCTCTCTGGTCGACATAGTGC-C--C-GCCCGCCC-TCTGCTCGTTT
* * * **
4455940 CGTCGGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATCAGACCAGATTGAGGG-T-TG
690 CGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGATCTG
* * * * * * * *
4456003 CGACAGCAAGATCGGCAGCACGCAGAGGGGGACCCAACCGATCCCTGGCTTGCGCATCCCGCCCC
755 -G-CAACAAGATCAGCAGCAGGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCACACC
* * * * ** * *
4456068 TCTGCCCTGCTGAGCGCCCACACGCTCATTTCGTGGGTTGAC-T-----T--AG-G--CA-----
818 TCTGGCCGGCTGAGCACCCGCACGCTTGTGTCATGGGTTGACTTAGCCATACAGAGTTCATTCCC
4456117 AA--T--
883 AATCTAA
* * * * * * *
4456120 --AT----AGTTTATT-CCTAGTCTAAGATTAAACCAGACCAAGGGTTGTGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCT-GTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * **
4456178 GCTCGGGCATGTGCTGGTGCTACATTTTTCTTCACCGGGGCACCATCACCGAAGCATCG-TCGGA
65 GCTCGAGCATGTGTTGGTGCCATATTTTTCTTCGTCGGGGCA-C-T--CCG-AGCATCGCT-GGA
* * * * * *
4456242 GAACCTGACCGACGGCATCGGGGTTTCGACGATCGGTGTGGTCGGGGGGGTTTGCGCACATGATG
124 GAACCTGACCGAC-GCATTGAGGTTCCGACGATCGG-G-GGGCCGGGGGGTGTGCGCACATGATG
* * * ** * *
4456307 TGCGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCTTTATCCCTCATCAAACCTTCAAAACTC
186 TACGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TGAGAACTC
* * *
4456372 ACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAA
250 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAA
* *
4456437 AT-GGTGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
315 ATAGG-GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
4456501 TTGTGCATGCCAACAAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGT-CTTTCG
379 TTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGG-CAAAAC-TCCTTCCG
* *
4456565 AAAAAATTTTAAAAAATCCCAAACCGCAAAAAG
441 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
4456598 GTTTGACTTA
Statistics
Matches: 8534, Mismatches: 1117, Indels: 1062
0.80 0.10 0.10
Matches are distributed among these distances:
834 23 0.00
835 40 0.00
836 3 0.00
837 1 0.00
839 3 0.00
840 25 0.00
841 332 0.04
842 40 0.00
843 26 0.00
844 15 0.00
845 396 0.05
846 61 0.01
847 92 0.01
848 10 0.00
849 19 0.00
850 9 0.00
851 20 0.00
852 14 0.00
853 5 0.00
854 8 0.00
855 19 0.00
856 42 0.00
857 255 0.03
858 90 0.01
859 82 0.01
860 42 0.00
861 63 0.01
862 31 0.00
863 31 0.00
864 21 0.00
865 37 0.00
866 26 0.00
867 173 0.02
868 216 0.03
869 17 0.00
870 23 0.00
871 46 0.01
872 44 0.01
873 116 0.01
874 289 0.03
875 276 0.03
876 99 0.01
877 254 0.03
878 287 0.03
879 75 0.01
880 17 0.00
881 35 0.00
882 42 0.00
883 15 0.00
884 6 0.00
885 35 0.00
886 312 0.04
887 191 0.02
888 203 0.02
889 252 0.03
890 137 0.02
891 127 0.01
892 489 0.06
893 213 0.02
894 425 0.05
895 175 0.02
896 102 0.01
897 155 0.02
898 80 0.01
899 24 0.00
900 9 0.00
901 28 0.00
902 10 0.00
903 13 0.00
904 13 0.00
905 177 0.02
906 192 0.02
907 49 0.01
908 21 0.00
909 30 0.00
910 64 0.01
911 30 0.00
912 33 0.00
913 145 0.02
914 42 0.00
915 108 0.01
916 15 0.00
917 19 0.00
918 76 0.01
919 99 0.01
920 31 0.00
921 36 0.00
922 9 0.00
924 1 0.00
925 64 0.01
926 90 0.01
927 65 0.01
928 23 0.00
929 19 0.00
930 192 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (889 bp):
GCATACGGAGTTCATTCCCTGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGTTGGTGCCATATTTTTCTTCGTCGGGGCACTCCGAGCATCGCTGGAGAACCTG
ACCGACGCATTGAGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTACGATGGGT
GCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATAGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCCGAAAAAATTTTAAAAA
ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGGTCGACATAGTGCCCGCCCGCCCTCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGT
TCATTCCCAGTCTAAGACCAGACCAGACCGAGGGATCTGGCAACAAGATCAGCAGCAGGCAGAGG
GGGACCCGACCGATCCCCGGCTTACGCATCCCACACCTCTGGCCGGCTGAGCACCCGCACGCTTG
TGTCATGGGTTGACTTAGCCATACAGAGTTCATTCCCAATCTAA
Found at i:4448161 original size:26 final size:26
Alignment explanation
Indices: 4448131--4448180 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
4448121 GACTTAGGCT
4448131 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
4448157 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
4448181 ATTAGACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:4448767 original size:845 final size:842
Alignment explanation
Indices: 4447189--4456597 Score: 5356
Period size: 845 Copynumber: 10.7 Consensus size: 842
4447179 ATCTGGCAAC
* * * * *
4447189 AGGATCGGTAG-CATGCAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCACCCCTTTTGC
1 AGGATCGGCAGTCATGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * * * *
4447253 TGGCTGAGCACCCGCACGCTTGTTTCATGGGTTGACTTAGCCATACAGAGTTCATTCCCAATGTA
66 CGACTGAGCACCCGCACCCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
*
4447318 AGCATACGGAGTTCATTCCCTGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGG
131 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG-CAGCACATGCTGG
* *
4447383 GCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTC-GGG-A-CA---C----CATCACTGGAGA
195 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCACCGGAGA
* * * *
4447438 ACCTGACCGACGGCATTAGCGTTCC-AGCGATCGGGGGGCTCGGGGGGTGTGCGCACATGATGTA
260 ACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGC-CGGGGGGTGTGCGCACATGATGTG
* * **
4447502 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTTTAGAACTCAC
323 CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
4447567 ACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTATGAAAT
388 ACCCCCTTAAAGA-CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
4447632 AGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACAC-TCTGAGTTTTTAGGTGAATTTTTTT
452 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTT
* * ** *
4447696 GTGCATGCCAACAAAAATACAAGGATTATGTCTACCAAGTTTGGCACCAAAAATCCTTCTGAAAA
516 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* *
4447761 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCT
581 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
4447826 TGCCATGAAACTTCACGTGACGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGC
646 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
4447891 ATTGGAACATAGAAATATGAAGATTTGCCTAAACCAACCGACCACCCTATCGATACACGGCTTGC
711 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
4447956 ACATCCCATCTCTCTGGCCGGCGTTCATTCCCAGTCTAAGATCAGAC-CAGACCAAGGGTT-GTG
776 GCATCCCGTCTCTCTGGCCGGCGTTCATGCCC-GTCTACGATCAG-CTCAG-CCAAGGGTTCGTG
4448019 GCAGT
838 GCAGT
4448024 AGGATCGGCAG-CATGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
1 AGGATCGGCAGTCATGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * *
4448088 CGACTGAGCACCCACACGCTTGTTTCATGGGTTGACTTAGGCTTACGGAGTTCATTCCCAGTCTA
66 CGACTGAGCACCCGCACCCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * *
4448153 AGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAGCAACACAAGCTGG
131 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GCAGCACATGCTGG
* *
4448218 GCTCGGGCAT-TGTTGGTGCCGCATTTTTCTTCATCGGGG-AGCCATTGCAGGAGCATCACCGGA
195 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCA-CCATCGC-GGAGCATCACCGGA
* * *
4448281 GAACCTGACCAGCGTCTTTGGGGTTCCGACGATCGGGGGGGCCGGGAGGGGTGTGCGCACATGAT
258 GAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GG-GGGGTGTGCGCACATGAT
* * *
4448346 GTGCGATGGGTGCTATTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAGCCTCGAGAACT
320 GTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
4448411 CACACCCCCTTAAAGA-ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
385 CACACCCCCTTAAAGACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
4448475 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
450 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * *
4448540 TGTGCACGCCAATAAAAATACAAGGATCATGTCTGCCAAGTTTGGGGCTAAAACTCTTTCTGAAG
515 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* *
4448605 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC
580 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * ** *
4448670 TTGCCATGAAACTTCACGAGAAGGATTAAGGGACCATTGTACAAATTTACAAGCCATAGAAATGG
645 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * *
4448735 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTA
710 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** * * * *
4448800 CGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCACCCGCTCGTTTCG-TCGGTTGGCTTAGG
775 CGCATCCCGTCTCTCTGGCCGGCGT--T-CATG----CCCG-TC--TACGATC----AGCTCAGC
* **
4448864 CAGATGGAGTTCATTCCTAGTCT
826 CA-A-GG-GTTCGTGGC-AG--T
* * * * * ***
4448887 AAGATCAGACCAG--ATTG-AG-GGTTGTGA--CGATAGGATTGGCAGCATGCAGAGGGGGACCC
1 AGGATC-G-GCAGTCA-TGCAGAGG--GGGACCCGAT-CGA-T--C--C---CCG-GCTTG---C
* * *** * * * * *
4448946 GATCGATCCTCGATTTACACATCCCACCCTTATGGCCGGCTGAGCACCCACACGCTCGTTTCGTG
48 G--C-ATCC-CG-----C-C-CCTCTGGC-------CGACTGAGCACCCGCACCCTTGTTTCATG
* * *
4449011 GGTTGACTTAGGCACACGGAGTTCATTCCCTA-TCTAAGCATACAGAGTTCATTTCCAAG-CTAA
95 GGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAGCATACGGAGTTCA-TTCCCAGTCTAA
* *
4449074 GATCGGACCAGACTGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTT-GTGCCGCATTT
158 GATCAGACCAGACCGAGGGTTGCG-CAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTT
* * * ** *
4449138 TTCTTCGTCGGGGCACCATTGCCGAAGCATCACTGGAGAACCTGACC-GATGCTATTAGGGTTCC
222 TTCTTCGTCGGGGCACCATCG-CGGAGCATCACCGGAGAACCTGACCGGCGGC-ATTGGGGTTCC
* * *
4449202 GACGATCGGGGGGCCGAGAGGGGTGTGTGCACATGATATGCAATGGGTGCT-GATACTTGGCCCT
285 GACGATCGGGGGGCCG-G-GGGGTGTGCGCACATGATGTGCGATGGGTGCTAG-TACTTGGCCCT
* * * * *
4449266 TACATTGGCCCTCTATCCCTCGTCAAACCTTGAGAACTCACACTCCCTTAAAGAGCATTTGAGAT
347 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA-CATTTGAGAT
* * * *
4449331 TTTACAAGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGATCA
411 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * * *
4449396 CAAAATCTTGGACACTTCGAGTTTTTCGCTGAATTGTTTTGTGCATGCCTACAACAATACAAGGA
476 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
**
4449461 TCACGTCTACCAAG-TTAAGGCCAAAACT-C--C-----------T------T-CC-AA----AA
541 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAA
* *
4449499 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCGTGCCATGATACTTCACGTGAAGGCT
606 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
** *
4449564 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAGGATG
671 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG
* * * *
4449629 TGCCCAAACCCACCTACCACCCTACCGATCCACGGCTTGTGCATCCCTTCTCT-TCGG-CGGCG-
736 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GGCCGGCGT
* * * ** *
4449691 T-AGTGCCCG-CT-CGCCTGCCCGC-CCGCTCGTTTCGTCGGTTCGCTTAGGCATACGG
800 TCA-TGCCCGTCTACG-AT--CAGCTCAGC-C---AAG--GGTTCG--T-GGC--A-GT
* * * ** * * *
4449746 AGTGCATTCCCAGTCTAAGATCAGACTGGATTAAGGGTTGCGGTAGCAGGACCGGTAGCACGCAG
1 AG-G-A-T--C-GGC--AG-TC--A-TGCA--GA-GG--G-GG-A-CCCGATC-G-ATC-C-CCG
** * * * * *
4449811 AG-GGGAACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGACTGAGCACCCGCACG
42 -GCTTG----C-G-C-AT-CCCG-C---C-CCT-CTG-GCCG-------ACTGAGCACCCGCACC
* *
4449875 CTTGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTC
84 CTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * *
4449940 CCAGTCTAAGATCAGACC-GAATCGAGGGTTGCGGTAGTACATGCTGGGCTCGAGCATGTGTTGG
149 CCAGTCTAAGATCAGACCAG-ACCGAGGGTTGC-GCAGCACATGCTGGGCTCGGGCATGTGTTGG
* ** *
4450004 TGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATTGCCGGAGAACCTAACCGGCGGCAT
212 TGCCGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCACCGGAGAACCTGACCGGCGGCAT
* * * * * * *
4450069 TGGGATTCTGGCTATCAGGGGGCCGAGGGGTGTGTGCACATGATGTGCGATGGGTGCT-GATACT
276 TGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAG-TACT
4450133 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC-CACACCCCCTTAAAGACCAT
340 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA-CAT
* *
4450197 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCCATTAAAGTGTTTGAAATGGGGACACCTTTTTCA
404 TTGAGATTTTACAGGTTTGCTGCCAGTAG-CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
** *
4450262 AAT-GTCACAAAATCTTGTACACTTATAG-TTTAAGCTGAATTTTTTTGTGCATGCCAA-AAAAA
468 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * *
4450324 TACAAGGATCACCTCTACCAAGTTTGGGGACAAAACTCCATC-GAAAAAATTTTAAAAAAATCCC
533 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAAAAATCCC
* * * * *
4450388 GAACCGCAAAAATTTTCAAAAATCATTAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCAC
597 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
4450453 GTGAATGCTT-AGGGACCATTGTATGAA-TTACAAGGCCATAAAAATAGCATTGGCACATAGAAA
662 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAA-GCCATAAAAATGGCATTGGCACACAGAAA
* * * *
4450516 TATGAAGATGTGCCTAAAACCACCTACCACCCTATCGGTCCACGGCTTGCGCATCTCGTCTCCCT
726 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * * *
4450581 -GCCGCGTAGTGCCTGCCTGCCCGTCCGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
791 GGCCG-G-CGT---T-CATGCCCGT-C-TACG----ATC----AGCTCAGCCA-A-GG-G-----
*
4450645 TCCCAGTCTAAGATCGGACCAGACG
832 T-----TC---G-T-GG--CAG--T
* ** * * *
4450670 AGGGTTGCGCAGCAGAGGATGCAGCACACAGAGGGGACCTGATCGATCCCCTGCTTGCGCATCCT
1 A-GGAT-CG--GCAG-TCATGCAG-----AG-GGGGACCCGATCGATCCCCGGCTTGCGCATCCC
* * * *
4450735 GCCCCTCTGGCCGATTGAGCACCCGCA-CGTTCATTTCGT-GGTTGACTTA-GCATACGGAGTTT
55 GCCCCTCTGGCCGACTGAGCACCCGCACCCTT-GTTTCATGGGTTGACTTAGGCATACGGAG-TT
* * *
4450797 CATTTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACTGAGGG-TGCA
118 CA-TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-
* * **
4450861 GCAGCACATGCTGGGATCGGGCATGGGTTGGTAGCCATATTTTTCTTCGTCGGGGCACCATCGCC
181 GCAGCACATGCTGGGCTCGGGCATGTGTTGGT-GCCGCATTTTTCTTCGTCGGGGCACCATCG-C
* * * * * *
4450926 AGAGCATCATCGAAAAAAACGCCTGACCGGCGGCATTTGGGGTTCCGGCAATCGGGGGGCC--GG
244 GGAGCATCACCG--GAGAA--CCTGACCGGCGGCA-TTGGGGTTCCGACGATCGGGGGGCCGGGG
* *
4450989 TGTGTGCGCACATGATGTGC-ATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCCAATAATCCC
304 GGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCC--T-ATCCC
*
4451052 TCATCAAACCTCG-GAGACTCACACCCCCTTAAAGAGCATTTGAGCTTTTACAGGTTTTGCTGGC
366 TCATCAAACCTCGAGA-ACTCACACCCCCTTAAAGA-CATTTGAGATTTTACAGG-TTTGCT-GC
4451116 CGAGTAAGCCATTTAAAGTGTCTGAAAATGGGGACACTTTTTTCAAATGGTCACCAAAATCTTGT
427 C-AGT-AGCCA-TTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAATGGTCA-CAAAATCTTGT
*
4451181 ACACTTCGAGTTTTTAGCTTGAATTTTTTTTGTTGCATGCCAACAAAAATACAAGGATCACCATC
487 ACACTTCGAGTTTTTAGC-TGAA-TTTTTTTG-TGCATGCCAACAAAAATACAAGGATCA-CGTC
* *
4451246 TACCAAGTTTGGGG-CAAAAATACCTTCTTGAAAAAATTTTTAAAAAGTCCCCGAACCGTAAAAA
548 TACCAAGTTTGGGGCCAAAACT-CCTTC-TGAAAAAA-TTTTAAAAAAT-CCCGAACCGTAAAAA
*
4451310 GTTTCAAAAAATCATGAAAAATTAG-AAACGAGTCGTCCTTGCCATGAAACTTCACGTGAATGCT
609 GTTTC-AAAAATCATGAAAAA-TAGAAAACGAGTCGT-CTTGCCATGAAACTTCACGTGAAGGCT
* * *
4451374 TAGGGGAACATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCACACAGAAATATGAAGATG
671 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG
* * *
4451439 TGCCTAAACCAACCTACCACCCTATCGAACCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCG-T
736 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTT
* * * ** *** *
4451503 -AGTGCCCGCCCACCCG-TCCGCTCATTTCGTCGG-T--TGGC-TT
801 CA-TGCCCGTCTA--CGATCAGCTCA-GCCAAGGGTTCGTGGCAGT
* * *** * * * ** * * ** **
4451543 AGGCATACGG-AGTTCATTCACAGTCTAAGATCAGACCGGA-CCGAGGGTTGTGGCATCAGGATC
1 AGG-AT-CGGCAG-TCATGCAGAG--GGGGACCCGATC-GATCCCCGGCTTG-CGCATCCCGCCC
** * ** * * * * ** *
4451606 GAC-AGCACGTAGAGGGGGACCCGATTGATCCCTAGCTTGTGCATCCCGCCCCTCTGGTCGGTT-
59 CTCTGGC-CG-A-CTGAGCACCCG---CA-CCCTTG-TT-T-CAT---G--GGT-T-GAC--TTA
** * * * ** *
4451669 GAGCACCCGTACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
105 G-GCATACGGA-GTTC-ATTCCCA-G-T--C-TAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * *
4451734 GGATCGGACCAAGGGTTTCGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTATCT
162 AGACCAGACCGAGGGTTGC-GCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCT
* * ** *
4451799 TCGTTGGGGCACCATCGTCGGAGGATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGA
226 TCGTCGGGGCACCATCG-CGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
** *
4451864 TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATATGTGCTGGTACTTGGCCCTTATATTG
290 TC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTG
*
4451929 GCCCCGTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
354 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA-CATTTGAGATTTTACAG
*
4451994 G-TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAGGGTCACAAAATC
418 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
4452058 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
483 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * * *
4452123 TACCAAGTTAGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCTCGAATCGCAAAAAGTTT
548 TACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* * * *
4452188 CAAAAATCATGAAAAATAAAAAAATGAGTCGTCTTGCCATGAAACTCCATGTGAAGGCTTAAGGG
613 CAAAAATCATGAAAAAT-AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GG
* * *
4452253 GACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGAACACAAAAATATGAAGATGTGCCT
676 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCT
* * * * *
4452318 AAACCCACCTACCACCCTATCGATCTACGGCTTGCGCATCTCGTCTCTTTGGTCGGCGTAGTGCC
741 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT--T-CA
* * ** *** * *** *
4452383 CGCCCGCCCGCCCGCACGCTC-GTTTCGTCGGTTGGCTTAGGCA-T
803 TGCCCGTCTACGATCA-GCTCAG--CCAAGGGTT--CGT-GGCAGT
* * ** ** * * *** *
4452427 ACAGAGTTCATTC-CCAGTCTAAGATCAGA-CCGGACAAAGGGTTG-TGGCAGTAGGATTGGTAG
1 --AG-G---A-TCGGCAGTC-ATG--CAGAGGGGGAC--CCGATCGAT--C-CCCGG-CT--T-G
* *** * ** * * *
4452489 CTCATAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGTCGGTTTGAGCAC
47 CGCAT----CCCG-CCC-CTC--TGGCCGAC-TGAGCA-CCCGCACC-CT--T--GTTT------
* * * *
4452554 CCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTAATCTAAGCATATGGAG
91 ---CA-----------TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * * * *
4452619 TTCATTCCCAGTCTAACATCAGATCGGATCAAGGGTTGCGGTAGCACATGCTGGGCTCAGGCATG
142 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GCAGCACATGCTGGGCTCGGGCATG
* *
4452684 TGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGATCC-
206 TGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-GCGGAGCATCACCGGAGAACCTGA-CCG
* ** *
4452748 GTGGCATTGGGGTTTTGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTG
269 GCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
4452813 CTAGCACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTAGAGAACTCACACCCCCTTA
332 CTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
4452878 AAGAGCATTTGAGATTTTATAGGTTTGCTTCAAGTAGCCATTACAAGTGTCTGAAAT-GGGACAC
397 AAGA-CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA-AAGTGTCTGAAATGGGGACAC
* * ***
4452942 --TTTT--AAGGGTCAC--AA----GTACACTTTGAG------GC--AATACCTTTGTGCA---C
460 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * ** *
4452986 -GC---AATCCAAGGATCAC--CTACCAA---TGCGG---AAACTCCTTCAAAAAAAATTCTAAA
525 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT-TTAA
* * * *
4453039 AAAAT-CTGACAACCGT-AAAAGTTTCAAAAATCGTGACAAATAG--AACGAGCCG-CTTGCCAT
589 AAAATCCCG--AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
4453099 GAAA-TTCACGTG--GGCTT-A---ACCATTGTCTGAATTTACAAG-CATGAAAATTGCATTGGC
652 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** * * * *
4453156 -TTCAGAAATATGAAG-TGT-ACTAAACCCACCTA-TACCCTATCAATCCACGGCTT-CGACGTC
717 ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG-CATC
** * * *
4453216 CCGTCTCTCTGGCCGGCGATATGCCGGCCCCGCCCCCACCTGTTCGTGATTGGCTTAAATACATG
781 CCGTCTCTCTGGCCGGCG-T-T-CATG-CCCG--TCTA-C-GATC---A---GC-----T-CA-G
** * ** * **
4453281 TTCTCCCAATCTAAGATCAGACCGAACCA
825 -----CCAA---GGGTTC-G-TGGCA-GT
* * ** * * **
4453310 AGG-CCGGCAGTAAGATCAGTAGCCAAAGAGAGTAACCC-AGCCGAGCCCCGGCTTGCGCATCTT
1 AGGATCGGC----AG-TCA-T-G-C--AGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCC
* * * * * * * * * *
4453373 GCCCCTTTGGCC-AGTTGAGCACGCACACGCTCGTTTCGTTGGTTGACTTAGGGATACGGTGTTC
55 GCCCCTCTGGCCGA-CTGAGCACCCGCACCCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTC
* ** * *
4453437 ATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTGGATCGGACCGAGGGTTGCCGC
119 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG-CGC
* * * * * * * * *
4453502 AGCACATCCTGGGCTCGGGCTTGTGTTCGTGCCGTATTTTTCATCGCCAGGGCACAATTGCCGGA
183 AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CGGA
** * * *
4453567 GCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCTGATGATCGGGGGGGCCGGGGGGGTGTG
247 GCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTG
* * *
4453632 CGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAAC
310 CGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * *
4453697 CTCGAGAACTCACACCCCCTTAAAGAGCATGTGAGATTTTATAGGTTTGCTGCCAGGAGCCATTA
375 CTCGAGAACTCACACCCCCTTAAAGA-CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * * *
4453762 AAGTGTCTAAAATGGGGACACATTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTCG
439 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * **
4453827 CTGAATTGTTTTGTGCATGCCTACAACAATACAAGGATCACGTCTACCAAG-TTAAGGCCAAAAC
504 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
4453891 T-C--C-----------T------T-CC-AA----AAAAAGTTTCAAAAATCATGAAAAATAGAA
569 TCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
** * *
4453930 AATAAGTCGTCGTGCCATGATACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
634 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
** * *
4453995 CATAAAAATGGCATTGGCATGCAAAAATAAGAAGATGTGCCT-AA---ACCTACCACCCTATCGA
699 CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * ** *
4454056 TCCACGGCTTACGCATCCCGCCTCTCTGGTCGATGTAGTGCCCGCCCGCCCGTTCGTTTCG-TCG
764 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCG--G-CGT----TCATGCCCG-TC--TACGATC-
* * * * **
4454120 GTTGGCTTAAG-CATGCGGAGTTCATTCCCAGTCT
818 ---AGC-TCAGCCA--AGG-GTTC-GTGGCAG--T
* ** * **
4454154 AAGATTGGACTGGACCAACGGTTGTGGTAGTAGGATCGACAGCACGCAGAGGGGGACCCGGCCGA
1 AGGA-T---C-GG--C-A-----GTCAT-GCA-GA--G-------------GGGGACCCGATCGA
** * * * * *
4454219 TCCCCGGCTTATGTATCCCTGCCCCGTCTGGCCTG-CTGAGCACCCGTACGCTCGTTTCGTGGGT
36 TCCCCGGCTTGCGCATCCC-GCCCC-TCTGGCC-GACTGAGCACCCGCACCCTTGTTTCATGGGT
* *
4454283 TGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCA
98 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * * * *
4454348 GACCGGATCGAGGGTTGTGGCAGCAAATACTGGGCTCGGGCATGTGGTGGTGTCGTATTTTTCTT
163 GACCAGACCGAGGGTTG-CGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTT
* * * * * *
4454413 CGTCGGGGCAACATCATC-GA--A--A---GA-AACCTTACCGGGTGGCATTGAGGTTCCGGCGA
227 CGTCGGGGCACCATC-GCGGAGCATCACCGGAGAACCTGACC-GGCGGCATTGGGGTTCCGACGA
* *
4454469 TCGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
290 TCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGG
* * * *
4454534 CCCCCTATCCCTTATCAAACCTTGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTATAGG
355 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA-CATTTGAGATTTTACAGG
* * * *
4454599 TTTGCTGCAAGTAGCCATTAAAGTGTCTGAAATGGGGACACGTTTTTCAAATGGACACAAAAGCT
419 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * *
4454664 TGTACACATCGAGGTTTTAGCTGAATTTTTTTTGTGCATGCCAACAAAAAATTACAAGGATAATG
484 TGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAAC-AAAAA-TACAAGGATCACG
** * * *
4454729 TCTACCAAGTTTGAAGCAAAAACTCCTTCTGAAAACATTTTAAGAAATCCCGAACCGTAAAAAGT
546 TCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
*
4454794 TTCAAAAAT-GTGAAAAATAGAAAACGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGGCTTAA
611 TTCAAAAATCATGAAAAATAGAAAAC-GAGTCGTCTTGCCATGAAACTTCACGTGAA-GGCTTAA
* ***
4454858 GGGACCATTGTATGAATTTACATG-CATAAAAATGGCATTGGCTTGCTAGAAATATGAAGATGTG
674 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC-AGAAATATGAAGATGTG
* * *
4454922 CCTAAACCCACCTACCACTCACTTATCGATCCATCGGCTTGTGCATCCCATCTCTATGGCCGGCC
738 CCTAAACCCACCTACCAC-C-C-TATCGATCCA-CGGCTTGCGCATCCCGTCTCTCTGGCCGG-C
* * * * * * *
4454987 GTAGTGCCTGCCTGCCCGCCCGTCCGTTCTTTTTTGTCGTTGGCTTTAGGCATACGGAGTTCATT
798 ---GT---T-CATGCCCG-TC-TACGATC-----AG-C--T--C---AGCCA-A-GG-GTTC-GT
**
4455052 CCCAGTCT
837 GGCAG--T
* * * * ** * * * *** * * *
4455060 AAGATCAG--GTCAGGACTGAGGTTGTGGCAGCAGGATCAGGTTAGCACGTTAGAAGGGGGACCC
1 AGGATCGGCAGTCATG-CAGAGG--G-GG-A-CCCGATC--GAT-CCCCG---GCTTGCGCATCC
* ** * *
4455123 GATCGATCCCCGGCTTGGCAC-ATCCCACCCTCTAGTTCAACTGAGCGTC-CGCCATGCCCGTTT
54 ---CG--CCCC-TC-TGGC-CGA-CTGAGC----A---C--C----CG-CAC-CC-T---TGTTT
*
4455186 CATGGGTCGTTGACTTAGGCATACTGAGTTCATTCCCAGTCTTAAGCATACGGAGAGTTCATTTC
91 CAT-GG--GTTGACTTAGGCATACGGAGTTCATTCCCAGTC-TAAGCATAC-G-GAGTTCA-TTC
* * ** * * * **
4455251 CCAGGTCTAGGATCGGACTTGGACCGAGGGTTGTGGCCAGCCACATGCTAGGCTCAGG--TGTCC
149 CCA-GTCTAAGATCAGAC-CAGACCGAGGGTTG-CG-CAG-CACATGCTGGGCTCGGGCATGTGT
* * * ** **
4455314 TGGTGCCGCATTTTTCTTCGTCAGGGCACCACCGTCGTAGCATCGTCGGAGAACCTGACCATCGG
209 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCACCGGAGAACCTGACCGGCGG
* * * *
4455379 CGTTAGGGTTCCAACGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
273 CATTGGGGTTCCGACGATC-GGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTA
* * *
4455444 GTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCAAGAACTCACACACCCTTAAAG
335 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
4455509 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGGGACACTTTT
400 A-CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
4455574 TTAAAATGGTCACAAAATCTTGTACACTTTGAGTTCTTAGCTGAATTTTTTTATGCATGCCAACA
464 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
** * *
4455639 AAAATACCGGGATCACGTCTACCAAGTTTGGGGGCAAAACTCTTTC-GAAAAAATTTTAAAAAAT
529 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT
* * * ** *
4455703 TCTGAAGCAAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAAGAAACTT
594 CCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* ***
4455768 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCATGTAGA
659 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
* * * *
4455833 AATATAAAGATGTGCCTAAACCCACCTACCACCGTATAGATCCACGGCTTGCGCATCCCATCTCT
724 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * * * **** *
4455898 CTGGCCGGTG-T-AGTGCTCGTCTGCCTG-CCCGC-CTGCTCTTTTCG-TCGGTTGGC-TT
789 CTGGCCGGCGTTCA-TGCCCGTCT-AC-GATCAGCTCAGC-C-AAGGGTTC-G-TGGCAGT
* * ***** * * * *** * * ** **
4455953 AGGCATACGG-AGTTAATTCCCAGTCTAAGATCAGACCAGAT-TGAGGGTTGCGACAGCAAGATC
1 AGG-AT-CGGCAG-TCA-T-GCAGAGGGGGACCCGATC-GATCCCCGGCTTGCG-CATCCCGCCC
** * * * * * * ** *
4456016 GGC-AGCACG-CAGAGGGGGACCCAACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGCCCTGCT
59 CTCTGGC-CGACTGA---GCACCC--GC-A-CCCTTG-TT--TCAT---G--GGT-TG-ACT--T
** * *** * * *** * *
4456079 GAGCGCCCAC--ACGCTCATTTCGTGGGTTGACTTAGGCAAATATAGTTTATTCCTAGTCTAAGA
104 -AG-GCATACGGA-GTTCA-TTC-CCAG-T--C-TAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * **
4456142 TTAAACCAGACCAAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTACATTTTT
160 TCAGACCAGACCGAGGGTTG-CGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTT
** * * ** * * *
4456207 CTTCACCGGGGCACCATCACCGAAGCATCGTCGGAGAACCTGACCGACGGCATCGGGGTTTCGAC
224 CTTCGTCGGGGCACCATC-GCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
* * * * *
4456272 GATCGGTGTGGTCGGGGGGGTTTGCGCACATGATGTGCGATGGGTTCTGGTACTTGGCCCTTATA
288 GATCGG-G-GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATA
** * *
4456337 TTGGCCCTTTATCCCTCATCAAACCTTC-AAAACTCACACCCCATTAAAGAGCATTTGAGATTTT
351 TTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGA-CATTTGAGATTTT
* * *
4456401 ACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGTGATACTTTTTTCAAATGGTCACAA
414 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
*
4456466 AATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATTACAAGGATC
479 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATC
* * *
4456531 ACGTCTACCAAGTTTGGGGCCAAAACGTCTTTC-GAAAAAATTTTAAAAAATCCCAAACCGCAAA
543 ACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAA
4456595 AAG
607 AAG
4456598 GTTTGACTTA
Statistics
Matches: 6804, Mismatches: 1054, Indels: 1388
0.74 0.11 0.15
Matches are distributed among these distances:
834 23 0.00
835 189 0.03
836 1 0.00
837 2 0.00
840 15 0.00
841 315 0.05
842 1 0.00
843 6 0.00
844 8 0.00
845 400 0.06
846 37 0.01
847 94 0.01
848 7 0.00
849 16 0.00
850 13 0.00
851 13 0.00
852 19 0.00
853 5 0.00
854 8 0.00
855 2 0.00
856 35 0.01
857 255 0.04
858 93 0.01
859 75 0.01
860 36 0.01
861 37 0.01
862 20 0.00
863 36 0.01
864 12 0.00
865 37 0.01
866 39 0.01
867 177 0.03
868 192 0.03
869 11 0.00
870 21 0.00
871 48 0.01
872 55 0.01
873 128 0.02
874 294 0.04
875 188 0.03
876 116 0.02
877 255 0.04
878 187 0.03
879 74 0.01
880 37 0.01
881 45 0.01
882 51 0.01
883 31 0.00
884 13 0.00
885 8 0.00
886 28 0.00
887 112 0.02
888 125 0.02
889 184 0.03
890 58 0.01
891 45 0.01
892 139 0.02
893 176 0.03
894 256 0.04
895 178 0.03
896 46 0.01
897 133 0.02
898 88 0.01
899 31 0.00
900 10 0.00
901 25 0.00
902 14 0.00
903 25 0.00
904 18 0.00
905 178 0.03
906 166 0.02
907 56 0.01
908 17 0.00
909 14 0.00
910 40 0.01
911 37 0.01
912 48 0.01
913 140 0.02
914 23 0.00
915 6 0.00
916 10 0.00
917 11 0.00
918 15 0.00
919 48 0.01
920 10 0.00
921 44 0.01
922 13 0.00
923 4 0.00
924 5 0.00
925 65 0.01
926 86 0.01
927 66 0.01
928 20 0.00
929 18 0.00
930 193 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (842 bp):
AGGATCGGCAGTCATGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
CGACTGAGCACCCGCACCCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGCAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCACCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTTCATGCCCGTCTACGATCAGCTCAGCCAAGGGTTCGTGGCAGT
Found at i:4449489 original size:894 final size:894
Alignment explanation
Indices: 4447978--4456597 Score: 9157
Period size: 894 Copynumber: 9.7 Consensus size: 894
4447968 TCTGGCCGGC
* *
4447978 GTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGTAGGATCGGCAGCATGCAGA
1 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGT-GCAGTAGGATCGGCAGCACGCAGA
* *
4448043 GGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCACACGCT
65 GGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCT
* * *
4448108 TGTTTCATGGGTTGACTTAGGCTTACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
130 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * * * *
4448173 AGTCTAAGATTAGACCAGACCGAGGGTTGCAGCAACACAAGCTGGGCTCGGGCAT-TGTTGGTGC
195 AGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGC
* * * *
4448237 CGCATTTTTCTTCATCGGGG-AGCCATTGCAGGAGCATCAC-CGGAGAACCTGACC-A-GCGTCT
260 CGCATTTTTCTTCGTCGGGGCA-CCATCGCCGGAGCATC-CTCGGAGAACCTGACCGATG-G-CA
**
4448298 TTGGGGTTCCGACGATCGGGGGGGCCGGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTATT
321 TTGGGGTTCCGACGATCGGGGGGGCCGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
4448363 ACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAGCCTCGAGAACTCACACCCCCTTAAAGA-
385 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
4448427 -ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
450 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
4448491 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAATAAA
515 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * * * *
4448556 AATACAAGGATCATGTCTGCCAAGTTTGGGGCTAAAACTCTTTCTGAAGAAATTTTAAAAAATCC
580 AATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTC-GAAAAAATTTTAAAAAATCC
* *
4448621 CAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
644 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * ** *
4448686 CGAGAAGGATTAAGGGACCATTGTACAAATTTACAAGCCATAGAAATGGCATTGGCATGCAGAAA
709 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* *
4448751 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCCCGTCTCTCT
774 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
4448816 GGCCAGCGTAGTGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCAGATGGA
839 GGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* ** * *
4448872 GTTCATTCCTAGTCTAAGATCAGACCAGATTGAGGGTTGTG-ACGATAGGATTGGCAGCATGCAG
1 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGCA-G-TAGGATCGGCAGCACGCAG
* ** * * * * * *
4448936 AGGGGGACCCGATCGATCCTCGATTTACACATCCCACCCTTATGGCCGGCTGAGCACCCACACGC
64 AGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGC
* *
4449001 TCGTTTCGTGGGTTGACTTAGGCACACGGAGTTCATTCCCTA-TCTAAGCATACAGAGTTCATTT
129 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAGCATACGGAGTTCA-TT
* * * *
4449065 CCAAG-CTAAGATCGGACCAGACTGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTT-G
192 CCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGG
* *
4449128 TGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGAAGCATCACT-GGAGAACCTGACCGAT-GCT
257 TGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-CTCGGAGAACCTGACCGATGGC-
* * * * * *
4449191 ATTAGGGTTCCGACGATC-GGGGGGCCGAGAGGGGTGTGTGCACATGATATGCAATGGGTGCTGA
320 ATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * * * *
4449255 TACTTGGCCCTTACATTGGCCCTCTATCCCTCGTCAAACCTTGAGAACTCACACTCCCTTAAAGA
384 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
4449320 GCATTTGAGATTTTACAAGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACATTTT
449 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * * *
4449385 TCAAATGATCACAAAATCTTGGACACTTCGAGTTTTTCGCTGAATTGTTTTGTGCATGCCTACAA
514 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* *
4449450 CAATACAAGGATCACGTCTACCAAG-TTAAGGCCAAAACT-C--C----------T------T-C
579 AAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCC
* *
4449494 C-AA----AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCGTGCCATGATACTTCA
644 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
4449554 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
709 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * * * *
4449619 TATGAGGATGTGCCCAAACCCACCTACCACCCTACCGATCCACGGCTTGTGCATCCCTTCTCT-T
774 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
*
4449683 CGG-CGGCGTAGTGCCCGCTCGCCTGCCCGCCCGCTCGTTTCGTCGGTTCGCTTAGGCATACGGA
839 -GGCCGGCGTAGT----G--C-CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* ** *** * * * * *
4449747 GTGCATTCCCAGTCTAAGATCAGACTGGATTAAGGGTTGCGGTAGCAGGACCGGTAGCACGCAGA
1 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG-TGCAGTAGGATCGGCAGCACGCAGA
* * * * *
4449812 GGGGAACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGACTGAGCACCCGCACGCT
65 GGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCT
* * * *
4449877 TGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCC
130 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * *
4449942 AGTCTAAGATCAGACC-GAATCGAGGGTTGCGGTAGTACATGCTGGGCTCGAGCATGTGTTGGTG
195 AGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTG
* * * **
4450006 CCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATTGC-CGGAGAACCTAACCGGCGGCATT
259 CCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCA-TCCTCGGAGAACCTGACCGATGGCATT
* * * * * * * *
4450070 GGGATTCTGGCTATC-AGGGGGCC-GAGGGGTGTGTGCACATGATGTGCGATGGGTGCTGATACT
323 GGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
4450133 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC-CACACCCCCTTAAAGACCAT
388 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
4450197 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCCATTAAAGTGTTTGAAATGGGGACACCTTTTTCA
453 TTGAGATTTTACAGGTTTGCTGCCAGTAG-CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
** *
4450262 AAT-GTCACAAAATCTTGTACACTTATAG-TTTAAGCTGAATTTTTTTGTGCATGCCAA-AAAAA
517 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * *
4450324 TACAAGGATCACCTCTACCAAGTTTGGGGACAAAACTCCATCGAAAAAATTTTAAAAAAATCCCG
582 TACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCGAAAAAATTTT-AAAAAATCCCG
* * * * *
4450389 AACCGCAAAAATTTTCAAAAATCATTAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACG
646 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * ***
4450454 TGAATGCTT-AGGGACCATTGTATGAA-TTACAAGGCCATAAAAATAGCATTGGCACATAGAAAT
711 TGAAGGCTTAAGGGACCATTGTATGAATTTACAA-GCCATAAAAATGGCATTGGCATGCAGAAAT
* * * *
4450517 ATGAAGATGTGCCTAAAACCACCTACCACCCTATCGGTCCACGGCTTGCGCATCTCGTCTCCCT-
775 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * *
4450581 GCC-GCGTAGTGCCTGCCTGCCCGTCCGTTCGTTTCATCGGTTGGCTTAGGCATACGGA
840 GCCGGCGTAGTG-C--CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * *
4450639 GTTCATTCCCAGTCTAAGATCGGACCAGA-CGAGGGTTGCGCAGCAGAGGAT--GCAGCACACAG
1 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGCAG--TAGGATCGGCAGCACGCAG
* * * ** *
4450701 A-GGGGACCTGATCGATCCCCTGCTTGCGCATCCTGCCCCTCTGGCCGATTGAGCACCCGCACGT
64 AGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGC
*
4450765 TCATTTCGT-GGTTGACTTA-GCATACGGAGTTTCATTTCCCAGTCTAAGCATACGGAGTTCATT
129 TCGTTTCGTGGGTTGACTTAGGCATACGGAG-TTCA-TTCCCAGTCTAAGCATACGGAGTTCATT
* * * * * *
4450828 CCCAGTGTAAGATCGGACCAGACTGAGGG-TGCAGCAGCACATGCTGGGATCGGGCATGGGTTGG
192 CCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGG
** * * * * **
4450892 TAGCCATATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCATCGAAAAAAACGCCTGACCGGC
257 T-GCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCCTCG--GAGAA--CCTGACCGAT
* * *
4450957 GGCATTTGGGGTTCCGGCAATC-GGGGGGCC---GGTGTGTGCGCACATGATGTGC-ATGGGTGC
317 GGCA-TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
4451017 TGGTACTT-GCCCTTATATTGGCCCCCAATAATCCCTCATCAAACCTCG-GAGACTCACACCCCC
381 TGGTACTTGGCCCTTATATTGGCCCCC--T-ATCCCTCATCAAACCTCGAGA-ACTCACACCCCC
*
4451080 TTAAAGAGCATTTGAGCTTTTACAGGTTTTGCTGGCCGAGTAAGCCATTTAAAGTGTCTGAAAAT
442 TTAAAGAGCATTTGAGATTTTACAGG-TTTGCT-GCC-AGT-AGCCA-TTAAAGTGTCTG-AAAT
4451145 GGGGACACTTTTTTCAAATGGTCACCAAAATCTTGTACACTTCGAGTTTTTAGCTTGAATTTTTT
501 GGGGACACTTTTTTCAAATGGTCA-CAAAATCTTGTACACTTCGAGTTTTTAGC-TGAA-TTTTT
* * *
4451210 TTGTTGCATGCCAACAAAAATACAAGGATCACCATCTACCAAGTTT-GGGGCAAAAATACCTTCT
563 TTG-TGCATGCCAACAAAAATACAAGGATCA-CGTCTACCAAGTTTAGGGCCAAAACT-CCTTC-
*
4451274 TGAAAAAATTTTTAAAAAGTCCCCGAACCGTAAAAAGTTTCAAAAAATCATGAAAAATTAG-AAA
624 -GAAAAAA-TTTTAAAAAAT-CCCGAACCGTAAAAAGTTTC-AAAAATCATGAAAAA-TAGAAAA
* * *
4451338 CGAGTCGTCCTTGCCATGAAACTTCACGTGAATGCTTAGGGGAACATTGTATGAATTTACAAGCC
684 CGAGTCGT-CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* ** * *
4451403 ATAAAAATAGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGAA
748 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * *
4451468 CCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGTCCGCTCATTTCGT
813 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCCGCCCGCTCGTTTCGT
4451533 CGGTTGGCTTAGGCATACGGA
874 CGGTTGGCTTAGGCATACGGA
* * * *
4451554 GTTCATTCACAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCA-TCAGGATCGACAGCACGTAG
1 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGT-GCAGT-AGGATCGGCAGCACGCAG
* ** * * * *
4451618 AGGGGGACCCGATTGATCCCTAGCTTGTGCATCCCGCCCCTCTGGTCGGTTGAGCACCCGTACGC
64 AGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGC
*
4451683 TCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G--------
129 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* *
4451736 -A-TC---G----GACC--A---AGGGTTTCGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTG
194 CAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTG
* * * * * *
4451787 CCGCATTTATCTTCGTTGGGGCACCATCGTCGGAGGATCGTCGGAGAACCTGACCGGTGGCATTG
259 CCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCCTCGGAGAACCTGACCGATGGCATTG
**
4451852 GGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATATGTGCTGGTACTT
324 GGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
4451916 GGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
389 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
4451981 TGAGATTTTACAGG-TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
454 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
4452045 GGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
519 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* *
4452110 CAAGGATCACGTCTACCAAG-TTAGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCTCGA
584 CAAGGATCACGTCTACCAAGTTTA-GGGCCAAAACTCCTTC-GAAAAAATTTTAAAAAATCCCGA
* * * * * *
4452174 ATCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAAATGAGTCGTCTTGCCATGAAACTCCATG
647 ACCGTAAAAAGTTTCAAAAATCATGAAAAAT-AGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * ** *
4452239 TGAAGGCTTAAGGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGAACACAAAAAT
711 TGAAGGCTTAA-GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * *
4452304 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGCGCATCTCGTCTCTTTG
775 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* *
4452369 GTCGGCGTAGTGCCCGCCCGCCCGCCCGCACGCTCGTTTCGTCGGTTGGCTTAGGCATACAGA
840 GCCGGCGTAGT----GCCCGCCCG--C-C-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* ** * * * **
4452432 GTTCATTCCCAGTCTAAGATCAGACCGGACAAAGGGTTGTGGCAGTAGGATTGGTAGCTCATAGA
1 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGT-GCAGTAGGATCGGCAGCACGCAGA
* * * *
4452497 GGGGGACCCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGTCGGTTTGAGCACCCGCACGC
65 GGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG-CTGAGCACCCGCACGC
* * * * *
4452562 TCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTAATCTAAGCATATGGAGTTCATTCC
129 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * *
4452627 CAGTCTAACATCAGATCGGA-TCAAGGGTTGCGGTAGCACATGCTGGGCTCAGGCATGTGTTGGT
194 CAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGT
*
4452691 GCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGC-CGGAGAACCTGATCCG-TGGCA
258 GCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-CTCGGAGAACCTGA-CCGATGGCA
** * * *
4452754 TTGGGGTTTTGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGCA
321 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
4452819 CTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGC
386 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
4452884 ATTTGAGATTTTATAGGTTTGCTTCAAGTAGCCATTACAAGTGTCTGAAAT-GGGACAC--TTTT
451 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA-AAGTGTCTGAAATGGGGACACTTTTTT
* * *** *
4452946 --AAGGGTCAC--AA----GTACACTTTGAG------GC--AATACCTTTGTGCA---C-GC---
515 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
4452988 AATCCAAGGATCAC--CTACCAA---T-GCGG---AAACTCCTTCAAAAAAAATTCTAAAAAAAT
580 AATACAAGGATCACGTCTACCAAGTTTAG-GGCCAAAACTCCTTC-GAAAAAATT-TTAAAAAAT
* * * *
4453044 -CTGACAACCGT-AAAAGTTTCAAAAATCGTGACAAATAG--AACGAGCCG-CTTGCCATGAAA-
642 CCCG--AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * *
4453103 TTCACGTG--GGCTT-A---ACCATTGTCTGAATTTACAAG-CATGAAAATTGCATTGGC-TTCA
705 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * * *
4453160 GAAATATGAAG-TGT-ACTAAACCCACCTA-TACCCTATCAATCCACGGCTT-CGACGTCCCGTC
770 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG-CATCCCGTC
* * * * * *
4453221 TCTCTGGCCGGCGATA-TGCCGGCCCCGCCCCCACCTGTTCGT-GATTGGCTTA--AATAC--A
834 TCTCTGGCCGGCG-TAGTGCCCG-CCCGCCCGCTCGT-TTCGTCGGTTGGCTTAGGCATACGGA
* * ** * * * **
4453279 TGTTC--TCCCAATCTAAGATCAGACC-GAACC-AAGGCCG-GCAGTAAGATCAGTAGC-CAAAG
1 -GTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGTGCAGTAGGATCGGCAGCACGCAG
* ** * * ** * * * * *
4453338 AGAGTAACCC-AGCCGAGCCCCGGCTTGCGCATCTTGCCCCTTTGGCCAGTTGAGCACGCACACG
64 AGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACG
* * *
4453402 CTCGTTTCGTTGGTTGACTTAGGGATACGGTGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
128 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* ** * * * * * *
4453467 CTAGTCTAAGATTGGATCGGACCGAGGGTTGCCGCAGCACATCCTGGGCTCGGGCTTGTGTTCGT
193 CCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGT
* * * * * * * *
4453532 GCCGTATTTTTCATCGCCAGGGCACAATTGCCGGAGCATCGTCGGAGAACCTGACCGGTGGCATT
258 GCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCCTCGGAGAACCTGACCGATGGCATT
* * *
4453597 GGGGTTCTGATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACT
323 GGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
4453662 TGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
388 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * * * *
4453727 GTGAGATTTTATAGGTTTGCTGCCAGGAGCCATTAAAGTGTCTAAAATGGGGACACATTTTTCAA
453 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * * *
4453792 ATGATCACAAAATCTTGTACACTTCGAGTTTTTCGCTGAATTGTTTTGTGCATGCCTACAACAAT
518 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
*
4453857 ACAAGGATCACGTCTACCAAG-TTAAGGCCAAAACT-C--C----------T------T-CC-AA
583 ACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCCCGAA
** * *
4453900 ----AAAAAGTTTCAAAAATCATGAAAAATAGAAAATAAGTCGTCGTGCCATGATACTTCACGTG
648 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
4453961 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATAAG
713 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* * *
4454026 AAGATGTGCCT-AA---ACCTACCACCCTATCGATCCACGGCTTACGCATCCCGCCTCTCTGGTC
778 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
** * * *
4454087 GATGTAGTGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAAGCATGCGGA
843 GGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
** ** * * * *
4454139 GTTCATTCCCAGTCTAAGATTGGACTGGACCAACGGTTGTGGTAGTAGGATCGACAGCACGCAGA
1 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGT-GCAGTAGGATCGGCAGCACGCAGA
** ** * * *
4454204 GGGGGACCCGGCCGATCCCCGGCTTATGTATCCCTGCCCCGTCTGGCCTGCTGAGCACCCGTACG
65 GGGGGACCCGATCGATCCCCGGCTTGCGCATCCC-GCCCC-TCTGGCCGGCTGAGCACCCGCACG
* *
4454269 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTT
128 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * *
4454334 CCAGTCTAAGATCAGACCGGA-TCGAGGGTTGTGGCAGCAAATACTGGGCTCGGGCATGTGGTGG
193 CCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGG
* * * ** * * *
4454398 TGTCGTATTTTTCTTCGTCGGGGCAACATCATC-GA--A-----AGA-AACCTTACCGGGTGGCA
257 TGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCCTCGGAGAACCTGACC-GATGGCA
* * *
4454454 TTGAGGTTCCGGCGATC-GGGGGG-CTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
321 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
4454517 CTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCACACCCACTTAAAGAGC
386 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
4454582 ATTTGAGATTTTATAGGTTTGCTGCAAGTAGCCATTAAAGTGTCTGAAATGGGGACACGTTTTTC
451 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
4454647 AAATGGACACAAAAGCTTGTACACATCGAGGTTTTAGCTGAATTTTTTTTGTGCATGCCAACAAA
516 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAAC-AA
* * * * * *
4454712 AAATTACAAGGATAATGTCTACCAAGTTT-GAAGCAAAAACTCCTTCTGAAAACATTTTAAGAAA
579 AAA-TACAAGGATCACGTCTACCAAGTTTAG-GGCCAAAACTCCTTC-GAAAAAATTTTAAAAAA
*
4454776 TCCCGAACCGTAAAAAGTTTCAAAAAT-GTGAAAAATAGAAAACGGAGTCGTCTTGCCATGAAAC
641 TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC-GAGTCGTCTTGCCATGAAAC
* *
4454840 TTCACGTGAAGGGCTTAAGGGACCATTGTATGAATTTACATG-CATAAAAATGGCATTGGCTTGC
705 TTCACGTGAA-GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
*
4454904 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCACTTATCGATCCATCGGCTTGTGCATC
769 -AGAAATATGAAGATGTGCCTAAACCCACCTACCAC-C-C-TATCGATCCA-CGGCTTGCGCATC
* * * *
4454969 CCATCTCTATGGCCGGCCGTAGTGCCTGCCTGCCCGCCCGTCCGTTCTTTTTTGTC-GTTGGCTT
829 CCGTCTCTCTGGCCGG-CGTAGTG-C--CC-GCCCGCCCG--C--TC-GTTTCGTCGGTTGGC-T
4455033 TAGGCATACGGA
883 TAGGCATACGGA
** * * *
4455045 GTTCATTCCCAGTCTAAGATCAGGTCAGGACTGA-GGTTGTGGCAGCAGGATCAGGTTAGCACGT
1 GTTCATTCCCAGTCTAAGATCAGACCA-GACCGAGGGTTGT-GCAGTAGGATC-GG-CAGCACG-
* * * ** ** **
4455109 TAGAAGGGGGACCCGATCGATCCCCGGCTTGGCACATCCC-ACCCTCTAGTTCAACTGAGCGTCC
61 CAG-AGGGGGACCCGATCGATCCCCGGCTT-GCGCATCCCGCCCCTCT-GGCCGGCTGAGCACCC
* * * *
4455173 GCCATGCCCGTTTCATGGGTCGTTGACTTAGGCATACTGAGTTCATTCCCAGTCTTAAGCATACG
123 G-CACGCTCGTTTCGT-GG--GTTGACTTAGGCATACGGAGTTCATTCCCAGTC-TAAGCATAC-
* * * * * *
4455238 GAGAGTTCATTTCCCAGGTCTAGGATCGGACTTGGACCGAGGGTTGTGGCCAGCCACATGCTAGG
182 G-GAGTTCA-TTCCCA-GTCTAAGATCAGAC-CGGACTGAGGGTTGCGG-CAG-CACATGCTGGG
* ** * * * * *
4455303 CTCAGG--TGTCCTGGTGCCGCATTTTTCTTCGTCAGGGCACCACCGTCGTAGCATCGTCGGAGA
241 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCCTCGGAGA
* * *
4455366 ACCTGACC-ATCGGCGTTAGGGTTCCAACGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATG
306 ACCTGACCGAT-GGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATG
* *
4455430 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCAAGAACTC
369 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
4455495 ACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAA
434 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
4455560 ATGGGGACACTTTTTTAAAATGGTCACAAAATCTTGTACACTTTGAGTTCTTAGCTGAATTTTTT
499 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* ** * * *
4455625 TATGCATGCCAACAAAAATACCGGGATCACGTCTACCAAGTTTGGGGGCAAAACTCTTTCGAAAA
564 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCGAAAA
* * * **
4455690 AATTTTAAAAAATTCTGAAGCAAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
629 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
4455755 TGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGC
694 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
4455820 ATTGGCATGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCGTATAGATCCACGGCTTGC
759 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
4455885 GCATCCCATCTCTCTGGCCGGTGTAGTGCTCGTCTGCCTGCCCGCCTGCTCTTTTCGTCGGTTGG
824 GCATCCCGTCTCTCTGGCCGGCGTA--G-T-G-C--CC-GCCCGCCCGCTCGTTTCGTCGGTTGG
4455950 CTTAGGCATACGGA
881 CTTAGGCATACGGA
* ** * * *
4455964 GTTAATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGCGACAGCAAGATCGGCAGCACGCAGA
1 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTG-CAGTAGGATCGGCAGCACGCAGA
* * * * * * *
4456029 GGGGGACCCAACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGCCCTGCTGAGCGCCCACACGCT
65 GGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCT
* *
4456094 CATTTCGTGGGTTGACTTAGGC--A---A----A-T---A---T-AG--T------TT-ATTCCT
130 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * ** * * *
4456133 AGTCTAAGATTAAACCAGACCAAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
195 AGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGC
** ** * * * * *
4456198 TACATTTTTCTTCACCGGGGCACCATCACCGAAGCATCGTCGGAGAACCTGACCGACGGCATCGG
260 CGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCCTCGGAGAACCTGACCGATGGCATTGG
* * * * * *
4456263 GGTTTCGACGATCGGTGTGGTCGGGGGGGTTTGCGCACATGATGTGCGATGGGTTCTGGTACTTG
325 GGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
** * *
4456328 GCCCTTATATTGGCCCTTTATCCCTCATCAAACCTTC-AAAACTCACACCCCATTAAAGAGCATT
390 GCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATT
* * *
4456392 TGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGTGATACTTTTTTCAAA
454 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
4456457 TGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATT
519 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-T
* * *
4456522 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGTCTTTCGAAAAAATTTTAAAAAATCCCAA
583 ACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAC-TCCTTCGAAAAAATTTTAAAAAATCCCGA
*
4456587 ACCGCAAAAAG
647 ACCGTAAAAAG
4456598 GTTTGACTTA
Statistics
Matches: 6563, Mismatches: 806, Indels: 729
0.81 0.10 0.09
Matches are distributed among these distances:
840 15 0.00
841 335 0.05
842 40 0.01
843 18 0.00
845 12 0.00
846 46 0.01
847 3 0.00
848 10 0.00
849 16 0.00
850 8 0.00
851 24 0.00
852 13 0.00
853 2 0.00
854 4 0.00
855 9 0.00
856 45 0.01
857 256 0.04
858 85 0.01
859 61 0.01
860 26 0.00
861 41 0.01
862 23 0.00
863 21 0.00
864 14 0.00
865 27 0.00
866 20 0.00
867 163 0.02
868 184 0.03
870 10 0.00
871 38 0.01
872 47 0.01
873 117 0.02
874 297 0.05
875 280 0.04
876 102 0.02
877 241 0.04
878 298 0.05
879 112 0.02
880 19 0.00
881 31 0.00
882 45 0.01
883 15 0.00
884 5 0.00
885 5 0.00
886 18 0.00
887 93 0.01
888 114 0.02
889 215 0.03
890 62 0.01
891 43 0.01
892 164 0.02
893 171 0.03
894 347 0.05
895 170 0.03
896 39 0.01
897 125 0.02
898 76 0.01
899 22 0.00
900 10 0.00
901 32 0.00
902 7 0.00
903 13 0.00
904 9 0.00
905 139 0.02
906 194 0.03
907 46 0.01
908 23 0.00
909 29 0.00
910 68 0.01
911 31 0.00
912 35 0.01
913 142 0.02
914 39 0.01
915 106 0.02
916 19 0.00
917 25 0.00
918 94 0.01
919 119 0.02
920 25 0.00
921 40 0.01
922 12 0.00
923 1 0.00
924 16 0.00
925 63 0.01
926 87 0.01
927 65 0.01
928 20 0.00
929 19 0.00
930 193 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (894 bp):
GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGCAGTAGGATCGGCAGCACGCAGAG
GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCC
GCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCCTCGGAGAACCTGACCGATGGCATTGGG
GTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
AGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCCCGAACCG
TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
GTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
Found at i:4449927 original size:26 final size:26
Alignment explanation
Indices: 4449897--4449949 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4449887 GTTGACTTAG
4449897 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
4449923 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4449949 G
1 G
4449950 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4450838 original size:26 final size:28
Alignment explanation
Indices: 4450783--4450838 Score: 89
Period size: 26 Copynumber: 2.1 Consensus size: 28
4450773 TGGTTGACTT
4450783 AGCATACGGAGTTTCATTTCCCAGTCTA
1 AGCATACGGAGTTTCATTTCCCAGTCTA
*
4450811 AGCATACGGAG-TTCA-TTCCCAGTGTA
1 AGCATACGGAGTTTCATTTCCCAGTCTA
4450837 AG
1 AG
4450839 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 12 0.44
27 4 0.15
28 11 0.41
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (28 bp):
AGCATACGGAGTTTCATTTCCCAGTCTA
Found at i:4452633 original size:26 final size:26
Alignment explanation
Indices: 4452583--4452634 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
4452573 GTTGGCTTAG
*
4452583 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
4452609 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
4452635 CATCAGATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:4453020 original size:874 final size:879
Alignment explanation
Indices: 4451704--4456466 Score: 4348
Period size: 841 Copynumber: 5.4 Consensus size: 879
4451694 GTTGACTTAG
* * * * *
4451704 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTTCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
4451769 CTCGGGCATGTGTTGGTGCCGCATTTATCTTCGTTGGGGCACCATCGTCGGAGGATCGTCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
4451834 ACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
** *
4451898 CGATATGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
4451963 ACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
4452027 GGGGACACTTTTTTCAAAGGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
326 GGGGACAC-TTTTT-AAATGGTCAC-AAA---TGTACACTTCGAG----T-GCT-AATTTTTTTG
* *
4452092 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTAGGGGCCAAAACTCCTTCTAAAAAA
379 TGCA---C-GC--AAATACAAGGATCAC--CTACCAA-TT-GGGG--AAAACTCCTTCTGAAAAA
* * *
4452157 ATTTTAAAAAATCTCGAATCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAAATGAGTCGTCT
432 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT-AGAAAACGAGTCGTCT
* * *
4452222 TGCCATGAAACTCCATGTGAAGGCTTAAGGGGACCATTGTATGAATTTACAAGCCATAAAAATTG
496 TGCCATGAAACTTCACGTGAAGGCTTAA-GGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** * *
4452287 CATTGGAACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTG
560 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
4452352 CGCATCTCGTCTCTTTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCACGCTCGTTTCGTCGGTTG
625 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGC-CGCTCGTTTCGTCGGTTG
* *
4452417 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACAAAGGGTTGTGGCAGTAGGA
689 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGTAGGA
* * * * * * *
4452482 TTGGTAGCTCATAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGTCGGTT
754 TCGGCAGCACATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG-C
* * * *
4452547 TGAGCACCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTAATCTAA
818 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
4452609 GCATATGGAGTTCATTCCCAGTCTAACATCAGATCGGATCAAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
4452674 CTCAGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
**
4452739 ACCTGATCC-GTGGCATTGGGGTTTTGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
131 ACCTGA-CCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * * *
4452803 GTGATGGGTGCTAGCACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTAGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
4452868 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTTCAAGTAGCCATTACAAGTGTCTGAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA-AAGTGTCTGAA
* * ***
4452933 AT-GGGACAC-TTTT-AAGGGTCAC-AA-GTACACTTTGAG-GC-AATACCTTTGTGCACGC-AA
324 ATGGGGACACTTTTTAAATGGTCACAAATGTACACTTCGAGTGCTAATTTTTTTGTGCACGCAAA
* * ** *
4452990 TCCAAGGATCACCTACCAA-TGCGG-AAACTCCTTCAAAAAAAATTCTAAAAAAATCT-GACAAC
389 TACAAGGATCACCTACCAATTGGGGAAAACTCCTTCTGAAAAAATT-TTAAAAAATCTCG--AAC
* * * *
4453052 CG-TAAAAGTTTCAAAAATCGTGACAAATAG--AACGAGCCG-CTTGCCATGAAA-TTCACGTG-
451 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * *
4453111 -GGCTT-A---ACCATTGTCTGAATTTACAAG-CATGAAAATTGCATTGGC-TTCAGAAATATGA
516 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* * * *
4453169 AG-TGT-ACTAAACCCACCTA-TACCCTATCAATCCACGGCTT-CGACGTCCCGTCTCTCTGGCC
581 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG-CATCCCGTCTCTCTGGCC
* * * *
4453230 GGCGATA-TG-CCG-GC-CCCGCCC-CCAC-C-TGTTCGT-GATTGGCTTA--AATAC--ATGTT
645 GGCG-TAGTGCCCGCCCGCCCGCCCGCCGCTCGT-TTCGTCGGTTGGCTTAGGCATACGGA-GTT
* * ** * * * * *
4453283 C--TCCCAATCTAAGATCAGACCGAACCAA-GG--CCGGCAGTAAGATCAGTAGC-CAAAGAGAG
707 CATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGTAGGATCGGCAGCACATAGAGGG
** * * ** * * * * *
4453342 TAACCC-AGCCGAGCCCCGGCTTGCGCATCTTGCCCCTTTGGCCAGTTGAGCACGCACACGCTCG
772 GGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCG
* * *
4453406 TTTCGTTGGTTGACTTAGGGATACGGTGTTCATTCCCAGTCTAA
836 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
4453450 GCATACGGAGTTCATTCCTAGTCTAAGATTGGATCGGACCGAGGGTTGCCGCAGCACATCCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * *
4453515 CTCGGGCTTGTGTTCGTGCCGTATTTTTCATCGCCAGGGCACAATTGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* *
4453580 ACCTGACCGGTGGCATTGGGGTTCTGATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
4453645 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
4453710 ACCCCCTTAAAGAGCATGTGAGATTTTATAGGTTTGCTGCCAGGAGCCATTAAAGTGTCTAAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
4453775 GGGGACACATTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTCGCTGAATTGTTTTG
326 GGGGACAC-TTTTT-AAATGGTCAC-AAA---TGTACACTTCGAG----T-GCT-AATTTTTTTG
* * * * ** *
4453840 TGCATGC--CTAC-A--A-CA-ATA-CAA----GG---A-TCACGTCT--ACCAA-GTTAAGGCC
379 TGCACGCAAATACAAGGATCACCTACCAATTGGGGAAAACTC-CTTCTGAAAAAATTTTAA----
*** ** ** *
4453886 AAAA-CTCCTTCCAAAAAAAGTTTCAAAAATCATGAAAAATAGAAAATAAGTCGTCGTGCCATGA
439 AAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
4453950 TACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
504 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
4454015 GCAAAAATAAGAAGATGTGCCT-AA---ACCTACCACCCTATCGATCCACGGCTTACGCATCCCG
569 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * ** * *
4454076 CCTCTCTGGTCGATGTAGT----GCCCGCCCG--C-CCGTTCGTTTCGTCGGTTGGCTTAAGCAT
634 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* ** * * * *
4454134 GCGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCAACGGTTGTGGTAGTAGGATCGACAGCAC
699 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGTAGGATCGGCAGCAC
** ** ** * *
4454199 GCAGAGGGGGACCCGGCCGATCCCCGGCTTATGTATCCCTGCCCCGTCTGGCCTGCTGAGCACCC
764 ATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCC-GCCCC-TCTGGCCGGCTGAGCACCC
* *
4454264 GTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
827 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
4454317 GCATACGGAGTTCATTTCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAAATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ***
4454382 CTCGGGCATGTGGTGGTGTCGTATTTTTCTTCGTCGGGGCA--A----C--ATCATCGAAAGA-A
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
4454438 ACCTTACCGGGTGGCATTGAGGTTCCGGCGATC-GGGGGG-CTGGGGGGTGTGCGCACATGATGT
131 ACCTGACC-GGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
4454501 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
4454566 CACCCACTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCAAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
4454631 TGGGGACACGTTTTTCAAATGGACACAAAAGCTTGTACACATCGAGGTTTTAGCTGAATTTTTTT
325 TGGGGACAC-TTTTT-AAATGGTCAC-AAA---TGTACACTTCGA-G---T-GCT-AA-TTTTTT
* * * **
4454696 TGTGCATGCCAACAAAAAATTACAAGGATAATGTCTACCAAGTTTGAAGCAAAAACTCCTTCTGA
377 TGTGCA---C-GC---AAA-TACAAGGATCA--CCTACCAA--TTG--GGGAAAACTCCTTCTGA
* * * * *
4454761 AAACATTTTAAGAAATCCCGAACCGTAAAAAGTTTCAAAAAT-GTGAAAAATAGAAAACGGAGTC
428 AAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC-GAGTC
*
4454825 GTCTTGCCATGAAACTTCACGTGAAGGGCTTAAGGGACCATTGTATGAATTTACATG-CATAAAA
492 GTCTTGCCATGAAACTTCACGTGAA-GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
4454889 ATGGCATTGGCTTGCTAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCACTTATCGATCC
556 ATGGCATTGGCATGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCAC-C-C-TATCGATCC
* * * * * * *
4454954 ATCGGCTTGTGCATCCCATCTCTATGGCCGGCCGTAGTGCCTGCCTGCCCGCCCGTCCGTTCTTT
617 A-CGGCTTGCGCATCCCGTCTCTCTGGCCGG-CGTAGTGCCCGCCCGCCCGCCCG-CCGCTC-GT
* * * **
4455019 TTTGTC-GTTGGCTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGGTCAGGACTGA-GGT
678 TTCGTCGGTTGGC-TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCGGACCAAGGGT
* * * *
4455082 TGTGGCAGCAGGATCAGGTTAGCACGTTAGAAGGGGGACCCGATCGATCCCCGGCTTGGCACATC
741 TGTGGCAGTAGGATC-GG-CAGCAC-ATAG-AGGGGGACCCGATCGATCCCCGGCTT-GCGCATC
* ** ** ** * * * *
4455147 CC-ACCCTCTAGTTCAACTGAGCGTCCGCCATGCCCGTTTCATGGGTCGTTGACTTAGGCATACT
801 CCGCCCCTCT-GGCCGGCTGAGCACCCG-CACGCTCGTTTCGT-GG--GTTGACTTAGGCATACG
4455211 GAGTTCATTCCCAGTCTTAA
861 GAGTTCATTCCCAGTC-TAA
* * * *
4455231 GCATACGGAGAGTTCATTTCCCAGGTCTAGGATCGGACTTGGACCGAGGGTTGTGGCCAGCCACA
1 GCATAC-G-GAGTTCA-TTCCCA-GTCTAAGATCAGAC-CGGACCGAGGGTTGCGG-CAG-CACA
* * ** * * * *
4455296 TGCTAGGCTCAGG--TGTCCTGGTGCCGCATTTTTCTTCGTCAGGGCACCACCGTCGTAGCATCG
59 TGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG
* * * *
4455359 TCGGAGAACCTGACC-ATCGGCGTTAGGGTTCCAACGATCGGGGGGGCCGGGGGGGGTGTGCGCA
124 TCGGAGAACCTGACCGGT-GGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCA
* *
4455423 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCA
187 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* *
4455488 AGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGT
252 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
*
4455553 GTCTGAAATGGGGACACTTTTTTAAAATGGTCACAAAATCTTGTACACTTTGAGTTCTTAGCTGA
317 GTCTGAAATGGGGACAC-TTTTT-AAATGGTCAC-AAA---TGTACACTTCGAG----T-GCT-A
** ** *
4455618 ATTTTTTTATGCATGCCAACAAAAATACCGGGATCACGTCTACCAAGTTTGGGGGCAAAACTCTT
370 A-TTTTTT-TG--TG-C-ACGCAAATACAAGGATCAC--CTACCAA--TT-GGGG-AAAACTCCT
* **
4455683 TC-GAAAAAATTTTAAAAAAT-TCTGAAGCAAAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
423 TCTGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* *
4455746 GAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCAT
487 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * * *
4455811 AAAAATGGCATTGGCATGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCGTATAGATCC
552 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * * *
4455876 ACGGCTTGCGCATCCCATCTCTCTGGCCGGTGTAGTGCTCGTCTGCCTGCCCGCCTGCTCTTTTC
617 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCC-GCTCGTTTC
* * *** * *
4455941 GTCGGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGCGA
681 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGG
* * ** * * *
4456006 CAGCAAGATCGGCAGCACGCAGAGGGGGACCCAACCGATCCCTGGCTTGCGCATCCCGCCCCTCT
746 CAGTAGGATCGGCAGCACATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * *
4456071 GCCCTGCTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGC--A---A----A-T---A--
811 GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
4456121 -T-A
876 CTAA
* * * * * * *
4456123 G--T------TT-ATTCCTAGTCTAAGATTAAACCAGACCAAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** ** * *
4456179 CTCGGGCATGTGCTGGTGCTACATTTTTCTTCACCGGGGCACCATCACCGAAGCATCGTCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
** * * * * * *
4456244 ACCTGACCGACGGCATCGGGGTTTCGACGATCGGTGTGGTCGGGGGGGTTTGCGCACATGATGTG
131 ACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* ** *
4456309 CGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCTTTATCCCTCATCAAACCTTC-AAAACTCA
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCA
* *
4456373 CACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
4456438 TGGTGATACTTTTTTCAAATGGTCACAAA
325 TGGGGACAC-TTTTT-AAATGGTCACAAA
4456467 ATCTTGTACA
Statistics
Matches: 3209, Mismatches: 463, Indels: 401
0.79 0.11 0.10
Matches are distributed among these distances:
840 14 0.00
841 338 0.11
842 40 0.01
843 22 0.01
845 14 0.00
846 53 0.02
847 11 0.00
848 10 0.00
849 16 0.00
850 8 0.00
851 21 0.01
852 14 0.00
853 5 0.00
854 7 0.00
855 15 0.00
856 42 0.01
857 255 0.08
858 83 0.03
859 65 0.02
860 6 0.00
861 35 0.01
862 19 0.01
863 20 0.01
864 13 0.00
865 28 0.01
866 5 0.00
867 152 0.05
868 8 0.00
869 1 0.00
870 6 0.00
871 13 0.00
872 8 0.00
874 21 0.01
875 35 0.01
876 25 0.01
877 168 0.05
878 94 0.03
879 11 0.00
880 12 0.00
881 1 0.00
882 15 0.00
885 1 0.00
886 18 0.01
887 73 0.02
888 50 0.02
889 15 0.00
890 5 0.00
891 2 0.00
892 11 0.00
893 2 0.00
894 1 0.00
895 10 0.00
896 22 0.01
897 17 0.01
900 1 0.00
901 11 0.00
903 10 0.00
905 171 0.05
906 167 0.05
907 32 0.01
908 22 0.01
909 16 0.00
910 46 0.01
911 7 0.00
912 2 0.00
913 41 0.01
914 28 0.01
915 30 0.01
916 9 0.00
917 10 0.00
918 21 0.01
919 101 0.03
920 30 0.01
921 41 0.01
922 9 0.00
924 1 0.00
925 65 0.02
926 87 0.03
927 68 0.02
928 18 0.01
929 2 0.00
930 199 0.06
931 3 0.00
932 1 0.00
933 2 0.00
934 1 0.00
935 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (879 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTAAATGGTCACAAATGTACACTTCGAGTGCTAATTTTTTTGTGCACGCAAATA
CAAGGATCACCTACCAATTGGGGAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGCAA
AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
GTGCCCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATCAGACCGGACCAAGGGTTGTGGCAGTAGGATCGGCAGCACATAGAGGGGGACCCGAT
CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:4453462 original size:26 final size:26
Alignment explanation
Indices: 4453426--4453476 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4453416 TGACTTAGGG
*
4453426 ATACGGTGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
*
4453452 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
4453477 ATTGGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:4454320 original size:26 final size:26
Alignment explanation
Indices: 4454291--4454343 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4454281 GTTGACTTAG
4454291 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
4454317 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
4454343 G
1 G
4454344 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:4457544 original size:26 final size:26
Alignment explanation
Indices: 4457508--4457558 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
4457498 TGACTTAGGG
*
4457508 ATATGGTGTTCATTCCCAGTCTAAGC
1 ATATGGAGTTCATTCCCAGTCTAAGC
4457534 ATATGGAGTTCATTCCCAGTCTAAG
1 ATATGGAGTTCATTCCCAGTCTAAG
4457559 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (26 bp):
ATATGGAGTTCATTCCCAGTCTAAGC
Found at i:4458433 original size:26 final size:26
Alignment explanation
Indices: 4458397--4458449 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4458387 GTTGACTTAG
4458397 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
4458423 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
4458449 G
1 G
4458450 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:4459324 original size:26 final size:26
Alignment explanation
Indices: 4459288--4459338 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4459278 GTTGACTTAG
* *
4459288 GCATACTGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4459314 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
4459339 GGATCAGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4459939 original size:902 final size:900
Alignment explanation
Indices: 4456600--4461758 Score: 6839
Period size: 902 Copynumber: 5.8 Consensus size: 900
4456590 GCAAAAAGGT
*
4456600 TTGACTTAGGCATATGATGTTCATT-CCAGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
1 TTGACTTAGGCATATGA-GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * *
4456664 GGACTGTATCGAGGGTTACGGTAGCACATGCTGGACTCGGGCATGTGCTGGTGCCGCATTTTTCT
65 AGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * **
4456729 TCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACGGGCGGCATTAGGGTTCCGGTGA
130 TCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATT-GGGTTCCGACGA
* * *
4456794 TCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGGGATGGGTGCTGGCACTTGGCCCTTATATTG
194 TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * *
4456859 GCCCCATATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAG
259 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
4456924 GTTTGCTGCAAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
324 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
4456989 TTGTACACTTTGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAACAAAAATACGAGGATCACGTC
389 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * *
4457053 TACCAAGTTTGGGGCCAAAAATCTTTCCGAAAAAATTCTAAAAAAT-CTAAAACCGCAAAAAGTT
454 TACCAAGTTTGGGGCCAAAACTC-TTCCGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTT
*
4457117 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
517 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
4457182 ACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCATGCAGAAATATGAAGATGTGCCTA
582 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTA
* *
4457247 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCGTCCCGTCTCTCTGGCCGGCGTAGTGCCC
647 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCC
* * * * * * *
4457312 GCCCGCCC-ACC-CAC--TCGTTTCATCGGTTGGCTTAGACATACAGTGTTCATTCCCAGTCTAA
712 GCCCGCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * ** * * * *
4457373 GATCAGAC-CGAACCAAGGGTTGTGGTAGTAATATCGGCAGCACAC-GAAGGAGTACCCGATCGA
777 GATCAGGCTAG-ACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAG-AGGGGGACCCGACCGA
* * * * * * *
4457436 TCCCCGGCTTACGCATCCTGCCCCTTTGGCCAGCTGAGCACGCACACGCTCGTTTCGTTGG
840 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGG
* * *
4457497 TTGACTTAGGGATATGGTGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
1 TTGACTTAGGCATAT-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
** * * * ** * *
4457562 AGACCAGACCGAGGGTTGCCGCAGCACATGCTGGGCTCGGGCTTGTGTTCATGTCACATTTTTCT
65 AGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * *
4457627 TCGCCAGGGCACCATTGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGTGTTCCGGCGA
130 TCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGG-GTTCCGACGA
* * *
4457692 TCGGGGGGGCCGGGGAGTGTGCGCACATAATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTG
194 TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
4457757 GCCCCCTATCTCTCAACAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAG
259 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
4457821 GTTTGCTGCCAGTAGCGATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
324 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
4457886 TTGTGCACTTCGAGTTTTGAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGT
389 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGT
* * *
4457951 CTACCAAGTTTGGGGTCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
453 CTACCAAGTTTGGGGCCAAAACT-CTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTT
*
4458016 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
517 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* ** *
4458081 ACCATTGTATGAATTTACAAGCCATTAAAATGGCATTGGCACACAAAAATA-AGAAGATGTGCCT
582 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATA-AAGATGTGCCT
* * *
4458145 AAACCCACCTACCACCCTATCCATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT---
646 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCC
* *
4458207 ---------GCCCGCCCGTTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
711 CGCCCGCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * *
4458263 AGATC-GGACTAGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGA
776 AGATCAGG-CTAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
* * * * *
4458327 T-CCCGGCTTGTGTATCCCACCCCGTCTGGCCGGTTGAGCACCCGCACGCTTGTTTCGTGGG
840 TCCCCGGCTTGCGCATCCCGCCCC-TCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGG
* *
4458388 TTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
1 TTGACTTAGGCATA-TGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * *
4458453 GGACCGGATCGAGGGTTGTGGCAGCAAATACTGGGCTCGAGCATGTGTTGGTGCCGCATTTTTCT
65 AGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * *
4458518 TCATCGGGG---CA-------A-CATCATCGAAGAACCTGACCGGTGGCATTGAGGTTCCGACGA
130 TCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTG-GGTTCCGACGA
* * *
4458572 TCGGGGGGG-CTGGGGGTGTGTGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
194 TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * * *
4458636 GCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCACTTTAAGAGCATTTGAGATTTTATAG
259 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * * *
4458701 GTTTGCTGCAAGTAGCCATTAAAGTGTCTGAGATGGGGACACGTTTTTCAAATGGACACAAAAGC
324 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * *
4458766 TTGTACACATCGAGGTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATAATGTC
389 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
** * * * * **
4458831 TACCAAGTTTGAAGCAAAAACTCCTTCTGAAAACATTTTAAGAAATCCCAAACCGTAAAAAGTTT
454 TACCAAGTTTGGGGCCAAAACT-CTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTT
*
4458896 CAAAAATCATGACAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
518 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
4458961 CCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCATGCAGAAATATGAAGATGTGCCTAA
583 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAA
* *
4459026 ACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCATCTCTATGGCCGGCGTAGTGCCCG
648 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCG
* *
4459091 CCTGCCCGCCCGCCCGTTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
713 CCCGCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * **
4459156 ATCAGGCTAGACTGAGGGTTGTGGCAGTAGGATCGGTAGCACGTAGAGGGGGACCCGGTCGATCC
778 ATCAGGCTAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC
* * *
4459221 CCGACTT-CTGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCCCGTTTCGTGGG
843 CCGGCTTGC-GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGG
* *
4459279 TTGACTTAGGCATACTGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGGATC
1 TTGACTTAGGCATA-TGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * *
4459344 AGACTGGACCGAGGGTTGTGGCAACACATGCTAGGCTCGGGCATGTCCTGGTGCCGCATTTTTCT
65 AGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * *
4459409 TCGTCGGGGCACCGTCGTCGTAGCATCACCGGAGAACCTGATCGTCGGCATTAGGGTTCCGACGA
130 TCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATT-GGGTTCCGACGA
4459474 T-GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
194 TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * *
4459538 GCCCCCTATCCCTTATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAG
259 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
4459603 GTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGGGACACTTTTTTAAAATGGTCACAAAATC
324 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * *
4459668 TTGTACACTTTGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCATGTT
389 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * * * **
4459733 TACCCAGTTTTGGGCCAAAACTCTTTTCGAAAAAATTTTCAAAAATCCTGAAGCAAAAAAAGTTT
454 TACCAAGTTTGGGGCCAAAACTC-TTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTT
* *
4459798 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAATCTTCATGTGAAGGCTTAAGGGA
518 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
4459863 CCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAA
583 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAA
* * *
4459928 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGTGTAATGCTCG
648 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCG
* * * * * *
4459993 TCCGCCCGCCCGCCTGCTCTTTTCGTCGGTTGGCTTAGGCATACAGAGTTAATTCCCAGTCTAAG
713 CCCGCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *** * *
4460058 ATCAGACCAGATCGAGGGTTGCAACAGCAAGATCGGCAGCACGCAGAGGGGGACCCAACCGATCC
778 ATCAGGCTAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC
* * * *
4460123 CCGGCTTGCGCATCCCGCCCCTCTGCCCGGTTGAGCGCCCACACGCTCGTTTCGTGGG
843 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGG
*
4460181 TTGACTTAGGCATATGGAGTTTATTCCCAGTCTAAG-AT-C-GAG--------C---C--AGA-C
1 TTGACTTAGGCATAT-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* **
4460229 ---C---A---AGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTACATTTTTCT
65 AGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
** ** * * * *
4460285 TCACCGGGGCACCATCACCGAAGCATCATCGGAGAACCTGACCGACGGCATCGGGGTTTCGACGA
130 TCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCAT-TGGGTTCCGACGA
* * *
4460350 TCAGTGTGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
194 TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * ** *
4460415 GCCCCTTATCCCTCATGAAACCTTTAGAACTCACACCCCATTAAAGAGCATTTGAGATTTTACAG
259 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * *
4460480 TTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTATTCAAATGGTCACAAAATC
324 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
4460545 TTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAA-ATAAAATACAAGGATCGCGT
389 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA-AAAATACAAGGATCACGT
* * *
4460609 CTACCAAGTTTGGGGCCAAAACTACTTCCAAAAAAATTTTAAAAAATCTTGAACCGTAAAATGTT
453 CTACCAAGTTTGGGGCCAAAACT-CTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTT
4460674 TCAAAAATCATGAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
517 TCAAAAATCATG-AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * *
4460739 GACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGACT
581 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCT
* * * * *
4460804 AAACCCACCTACCACCCTATCTATCCACAGCTTGCGCATCTCGTCTCTCTGGCCGGCATAGTGCC
646 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCC
* * * * * * *
4460869 CGCCCGTCCGCCCGCCTGCTCATTTCGTTGTTTGGCTTAGGCATACGGAGTTCACTCCAAGTCTA
711 CGCCCGCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * * * *
4460934 AGAT-TGGATCGCACCGAGGGTTATGGCAGCAGGTTTGGCAGCACGCAGAGGGGGACTCGGCTGA
776 AGATCAGGCTAG-ACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
* * * *
4460998 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTAAGCTCATTTCGTGGG
840 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGG
* * * **
4461059 TTAACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATC
1 TTGACTTAGGCATA-TGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* *
4461124 AGA-TCGGACTGAGGGTTGCGGCAGCACATGCTAGGG-TCGGGCATGTGCTGGTGCCGTATTTTT
65 AGACT-GGACCGAGGGTTGCGGCAGCACATGCT-GGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * *
4461187 CTTCGTCGAGGCACCATC-ACTGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGG
128 CTTCGTCGGGGCACCATCGTC-GGAGCATCATCGGAGAACCTGACCGGCGGCATT-GGGTTCCGA
*
4461251 CGATC-GGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
191 CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
4461315 TTGGCCGCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAAAAGCATTTGAGATTTTA
256 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
4461379 CAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
321 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
4461444 ATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATGCAAGGATCAC
386 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* *
4461509 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT-CTCGAGCCGTAAAAA
451 GTCTACCAAGTTTGGGGCCAAAACT-CTTCCGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAA
* * * * *
4461573 GTTTCAAAAATCGTGAAAAATAAAAAACGAGTTGTCTTGCCATGAAACTTAACGTGAAAGCTTAA
514 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* *
4461638 GGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCGGAAATATAAAGATGT-C
579 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGC
* * * * * *
4461702 CTAAACCCTCCTACCACCCTACCGATCCCCGGATTGCGCATCCCACCCCTCTGGCCG
644 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCG
4461759 ACTGAGCACC
Statistics
Matches: 3742, Mismatches: 430, Indels: 177
0.86 0.10 0.04
Matches are distributed among these distances:
876 104 0.03
877 299 0.08
878 355 0.09
879 338 0.09
880 169 0.05
881 4 0.00
882 1 0.00
885 1 0.00
886 2 0.00
888 5 0.00
889 3 0.00
890 18 0.00
891 502 0.13
892 23 0.01
894 4 0.00
895 1 0.00
897 143 0.04
898 244 0.07
899 258 0.07
900 50 0.01
901 119 0.03
902 903 0.24
903 93 0.02
904 100 0.03
905 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
TTGACTTAGGCATATGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
GACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
CGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGTTCCGACGATC
GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAACTCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAA
AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACC
CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCC
GCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
AGGCTAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCG
GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGG
Found at i:4466937 original size:897 final size:890
Alignment explanation
Indices: 4464628--4469682 Score: 6059
Period size: 888 Copynumber: 5.7 Consensus size: 890
4464618 GTTGACTTAG
* * *
4464628 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGACAGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-CGACCGAGGGTTACGGCAGCACATGCTGGG
* * **
4464693 CTCGGGCATGTGTTGGTGCCGCATTTTCCTTCGCCGATGCACCATCGCCAGAGCATCACCGGAGA
65 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CC--AGCATC-CCGGAGA
*** * *
4464758 ACCTGACCGGCAAAATTAGGGTTCTGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
126 ACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
4464823 ATGGGTGGTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCAAGAACTCACAC
191 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
4464888 CCCCTTAAAGTGAATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCCGAAATGG
256 CCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
4464953 GGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCT-AATTGTTTTTGT
321 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGT
* * *
4465017 GCATGCGAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCGAAAAAA
385 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAATC-CTTCTCGAAAAAA
* * *
4465082 TTTTTAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACAAGTCGTCTAG
449 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTG
* *
4465147 CCTTGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
514 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
4465212 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGC
579 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
4465277 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCA-CCCTCCTGCTCGTTTCATCGGTTGGC
644 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTG-CCAGCCCGCC-GCTCG-----TCGGTTGGC
* ** * * * *
4465341 TTAGGTATACGGAGTTCATTCTTAGGCTAAGATTAGATCAGACCGAGGGTTACGGCAGCAGGAT-
702 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATC
* * * * * * *
4465405 GGACAACACCCAGAGAGGGACCCGATCGATCCCCGGCTTACGCGTCCCGCCCCTCTGGTCGGCTG
767 GG-CAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCTG
* * * *
4465470 AGCAACCGTACGCTCATTTCGTGGGTTGACTAAGGCATACGGAGTTCATTCCCAGTCTAA
831 AGCACCCGCACGCTCATTTCGCGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * *
4465530 GCATACAAAATTCATTCCCAGTCTAAGATCAGACCGAATCGGGGGTTACGGCAGTACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG-ACCGAGGGTTACGGCAGCACATGCTGGG
* *
4465595 CTCGGGCATGTGTTGGTGTCGTATTTTTCTTCGTCGGGGCACCAT-----CA--CCGGAGAACCT
65 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCCAGCATCCCGGAGAACCT
* * *
4465653 GACCGGCGGCATTAGGGTTTCGACGATCGGGGGGCCAGGGGGTGTGCGCGCATGATGTGCGATGG
130 GACCGGCGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
*
4465718 GTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCC
195 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * *
4465782 TTAAAGA-ACATTTGAGATTTTTCAGTTTTGCTACCAGTAGCCATTAAAGTGTATGAAA-GAGGG
260 TTAAAGAGA-ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG-GGG
* * *
4465845 ACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGTTGAATTGTTTTGTGCA
323 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
*
4465909 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTT-TCGAAAAAA-T
388 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAA-TCCTTCTCGAAAAAATT
* * * ** *
4465972 TTAAAAAATCACGAACCGTAAAAAGTTTTAAAAATCGTAAAAAATAGAAAATGAGTCATCTTGCC
451 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCC
* *
4466037 ATGAAACTTCACGTAAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
516 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** * * *
4466102 GCACACAGAAATATGAAGATGAGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGTGCAT
581 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
4466167 CTCGTCTTTCTGGCCGACATAGTGCCCGCCTGCCCGCCCGCACGCTCGTCGATTGGCTTAGGCAT
646 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCAGCCCGC-CGCTCGTCGGTTGGCTTAGGCAT
* * *
4466232 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGAG-GGCAGGATCGGCAGCA
710 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACG-GCAGCAGGATCGGCAGCA
* * * * * *
4466296 CGCAGAGGGGGTCCCAGTCGATCCTCGGCTTGCGCATCCCACCCCTTTGGCCGGCTGAGCACTCG
774 CGCAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCACCCG
*
4466361 CACGCTCGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 CACGCTCATTTCGCGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
4466413 GCAAATGGAGTTCATTCCCAGTCTAAGATCAGACCGACCGAGGGTTGCGGCAGCACATGTTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACCGAGGGTTACGGCAGCACATGCTGGGC
4466478 AT-GGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGCCGGAGA
66 -TCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CC--AGCATC-CCGGAGA
* * *
4466542 ACCTGACTGGCGGCATTGGGGTTCCGACGATCGAGTGGGCCGGGGGGGTGTGCGCACATGATGTG
126 ACCTGACCGGCGGCATTAGGGTTCCGACGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTG
* *
4466607 CGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCAC
189 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
** *
4466672 ACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTGTCTGAAAT
254 ACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
4466737 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTT
319 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
4466802 TTCACGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAGTCCTTCT-GAAAAT
384 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA-TCCTTCTCGAAAAA
* *
4466866 ATTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACAAGTCGTCTT
448 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTT
4466931 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
513 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
4466996 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCATGGCTTGCG
578 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* **
4467061 CATCCCGTCTCTCTGGCCGACGTAGTG--C-CC-GCCAGCTCG--TTTCGTCGGTTGGCTTAGGC
643 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCAGCCCGCCGCTCGTCGGTTGGCTTAGGC
* * * * * *
4467120 ATACGGAGTTCATT-CCAATCTAAGACCAGATCGGACAGAAGGTTACGGTAGCAGGATCGGCAGC
708 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGGCAGC
* * * * * * * * *
4467184 ACGTAGAGGAGGACCCGGCCCATCCCCGGGTTACGCATCCTACCCCTCTTGTCAGCTGAGCACCC
773 ACGCAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCACCC
* *
4467249 GCACGCTCGTTTCGTC-GGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
838 GCACGCTCATTTCG-CGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
4467302 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-CGACCGAGGGTTACGGCAGCACATGCTGGG
* ** *
4467367 CTCGGGCATGTATTGGTGCCGCATTTTTCTTCGTCGATGCACCATCACCGGAGCATCGCCGAAGA
65 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CC--AGCATC-CCGGAGA
* * * * * *
4467432 ACCCGATCGACGGAATTAGGGTTCTGGCGATCGGGGGGGCC-GGGGGTGTGCGCACATGATGTGC
126 ACCTGACCGGCGGCATTAGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
4467496 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
190 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
4467561 -CCCCTTAAAGAGAATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATG
255 CCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
4467625 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTTTGT
320 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * *
4467690 GCATGCCAACAAAAATAAAAGGATCATGACTATCAAGTTTGGGGCAAAAAATCCTTC-CAAAAAA
385 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC--CAAATCCTTCTCGAAAAA
* * ** * * *
4467754 ATTTTTAAAAATCTCGAATCAAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTT
448 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTT
* *
4467819 GCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTA
513 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
4467884 TTGGCATGTAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACG
578 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
4467949 CATCCCGTCTCTCTGACCGACGTAGTGCCCGCCCGTTCGCCAGCCTGTCCGCTCATTTCGTCGGT
643 CATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CC--T-GCCAGCCCG-CCG--C---TCGTCGGT
* * * * *
4468014 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCAAGGGTTGCGGCAGCAA
698 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAG
* * * * * ** *
4468079 GATCGACAGCATGTATAGGGGGATCCGGTCGATCCCCGGCTTACGCATCCCTTCCCTCTGGCTGG
763 GATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGG
* *
4468144 CTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA-GGAAGTTCATTCCCAATCTAA
828 CTGAGCACCCGCACGCTCATTTCGCGGGTTGACTTAGGCATACGG-AGTTCATTCCCAGTCTAA
* * * * *
4468207 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
4468272 CTCCGGCATGTGTTGATGCCGTATTTTTCTTCATCGGGGCACCAT-----CA--CCGGAGAACCT
65 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCCAGCATCCCGGAGAACCT
* ** * ** * *
4468330 GACCGACAACATTGGGGTTCCGACGATCAAGGGGATCGTGGGGGGTGTGCGCACATGATGTGCAA
130 GACCGGCGGCATTAGGGTTCCGACGATC--GGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGA
* *
4468395 CGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
192 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* **
4468460 CCCTTATAGAGAATTTGAGATTTTACAGGTTTGCTGGTAGTAGCCATTAAAGTGTCTGAAAT-GG
257 CCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
4468524 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGT
322 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
** * ** ** * **** ** *
4468589 ATG-C--TGAAACT-C---CTTC-CG---AAAAAATTT--TAAAAAATCCCGAAC-CGCAAAAAG
387 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAT-CC-TTCTCG-AAAAAA
* *
4468640 GTTT-AAAAA--TC--A-TG-AAAAA---T-AGAAAA-C----------G------AGTCGTCTT
449 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCA-AAAATCGTGAAAAATAGAAAACAAGTCGTCTT
*
4468677 GCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
513 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
4468742 TTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTAAT-GATACACGACTTGC
578 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT-ATCGATCCACGGCTTGC
* * * * * *
4468806 GCATCCCTTCTCTCTGGCTGACGTAGTGCCCG-CTCGCCCGCCCACTCGCTAATTTCATCGATTG
642 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCT-GCCAGCCCGC-CGC-----TCGTCGGTTG
* * * * *
4468870 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGAGACCAGACCGAGGGTTGCAGCAGTAGGA
700 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGA
* * * ** **
4468935 TAGGCAGCATGCAGAGGAGGACCCGACCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGGCT
765 TCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCT
* * * ** *
4469000 GAGCACCCGTACGCTCGTTTTGTTGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
830 GAGCACCCGCACGCTCATTTCGCGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** **
4469061 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACCGAGGGTTACGGCAGCACATGCTGGG
* ** * * ** **
4469126 CTCGGGCATGTGTTGGCGCCATATTTTTCTTCGACGGGGCAACATTGCGGGAGCATCGCCATAGA
65 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCA-T-C-CCAGCATC-CCGGAGA
* * * *
4469191 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCACACATGATGTGC
126 ACCTGACCGGCGGCATTAGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
4469256 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCGCATCAAACCTTGAGAACTCACA
190 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
4469321 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGAAATG
255 CCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
4469386 GGGAGACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTAAATTTGTTTGT
320 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * ** * ** *
4469451 GAATGCCAGCAAAAATACACGGATCACCTCTACAAAGTTTGGGGTGAAAACCCCCTCCTAAAAAA
385 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAATCCTTCT-CGAAAAAA
* * * **
4469516 TTTTAAAAAAAC-CTGAACCGCAAAAA-TTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTT
449 TTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTT
* *
4469579 GCCATAAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
513 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * **
4469644 TTGGCACACAAAAATATGAAGAAATGCCTAAACCCACCT
578 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
4469683 TGGGATCCCG
Statistics
Matches: 3589, Mismatches: 437, Indels: 254
0.84 0.10 0.06
Matches are distributed among these distances:
852 1 0.00
853 2 0.00
854 278 0.08
855 3 0.00
856 1 0.00
858 153 0.04
859 2 0.00
862 2 0.00
863 142 0.04
864 71 0.02
865 36 0.01
867 4 0.00
868 1 0.00
871 2 0.00
872 1 0.00
874 2 0.00
875 13 0.00
876 10 0.00
877 9 0.00
878 6 0.00
880 1 0.00
881 1 0.00
882 72 0.02
883 203 0.06
884 10 0.00
885 13 0.00
886 8 0.00
887 162 0.05
888 516 0.14
889 281 0.08
890 220 0.06
891 126 0.04
892 2 0.00
893 44 0.01
894 44 0.01
895 90 0.03
896 83 0.02
897 451 0.13
898 58 0.02
901 1 0.00
902 198 0.06
904 34 0.01
905 231 0.06
906 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (890 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACCGAGGGTTACGGCAGCACATGCTGGGC
TCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCCAGCATCCCGGAGAACCTG
ACCGGCGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAATCCTTCTCGAAAAAATTTTAAA
AAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGACGTAGTGCCCGCCTGCCAGCCCGCCGCTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAG
GGGGACCCGGTCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTC
ATTTCGCGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:4467312 original size:26 final size:26
Alignment explanation
Indices: 4467276--4467328 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4467266 GTTGACTTAG
*
4467276 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4467302 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4467328 G
1 G
4467329 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4468217 original size:26 final size:26
Alignment explanation
Indices: 4468181--4468233 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4468171 GTTGACTTAG
*
4468181 GCATAGGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
4468207 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
4468233 G
1 G
4468234 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:4469064 original size:26 final size:26
Alignment explanation
Indices: 4469035--4469087 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4469025 GTTGACTTAG
*
4469035 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4469061 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4469087 G
1 G
4469088 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4470320 original size:689 final size:700
Alignment explanation
Indices: 4468979--4470370 Score: 1899
Period size: 689 Copynumber: 2.0 Consensus size: 700
4468969 CGGCTTACGC
* * * *
4468979 ATCCTGCCCCTCTGGCCGGCTGAGCACCCGTACGCTCGTTTTGTTGGTTGACTTAGGCATACGGA
1 ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACACTCGTTTCGTTGGTTGACTTAGGCATACGGA
* * * *
4469044 GTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTG
66 GTTCATTCCCAATCTAAACATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* ** *
4469109 TGGCAGCACATGCTGGGCTCGGGCATGTGTTGGCGCCATATTTTTCTTCGACGGGGCAACATTGC
131 CGGCAGCACATGCTGGGCTCCAGCATGTGTTGGCGCCATATTTTTCTTCGACAGGG--ACA-T-C
* * *
4469174 GGGAGCATCGCCATAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGT
192 ----GCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGCGGGT
* * *
4469239 GTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCGCATCA
253 GTGCACACATGATGTGCAATGAGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCGCATCA
* *
4469304 AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTCCTGCCAGTAGCCA
318 AACCTTCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTCCGGCCAGTAGCCA
* * *
4469369 TTAAAGTGTCTGAAATGGGGAGACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTT
383 TTAAAGTGTCTGAAATGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAATTTT
* * **
4469434 TAGCTAAATTTGTTTGTGAATGCCAGCAAAAATACACGGATCACCTCTACAAAGTTTGGGGTGAA
448 TAGCTAAATTTGTTTGTGAACGCCAGCAAAAATACAAGGATCACCTCTACAAAGTTTGGGGCCAA
* *
4469499 AACCCCCTCCTAAAAAATTTTAAAAAAACCTGAACCGCAAAAATTTCAAAAATCATGAAAAATAG
513 AACCCCCTCCTAAAAAAGTTTAAAAAAACCTGAACCGCAAAAAGTTCAAAAATCATGAAAAATAG
* *
4469564 AAAATGAGTCGTCTTGCCATAAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
578 AAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
4469629 GCCATAAAAATGGCATTGGCACACAAAAATATGAAGAAATGCCTAAACCCACCTTGGG
643 GCCATAAAAATGGCATTGGCACACAAAAATATGAAGAAATGCCTAAACCCACCTTGGG
*
4469687 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCG-TGGATTGACTTAGGCATACGG
1 ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACACTCGTTTCGTTGG-TTGACTTAGGCATACGG
* *
4469751 AGTTCATTCCCAATCTAAACATA-TGAGTTCATTCCCAGTCTAAGATCGGATCAGA-CGAGGGTT
65 AGTTCATTCCCAATCTAAACATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
* * *
4469814 GCGGCAGCACATGCTGGGCTCCAGCATGTGTTTGG-GTGCGTATTTTTCTTCGTCAGGG-CA-C-
130 GCGGCAGCACATGCTGGGCTCCAGCATGTG-TTGGCG-CCATATTTTTCTTCGACAGGGACATCG
* * *
4469875 CATCGCCAGA-AACCTGACCGGCGGCATTGGGGTTCCGACGATC-TGGGGGCCGGCGGGTGTGCG
193 CATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGCGGGTGTGCA
* * * *
4469938 CACATGATGTGCAATGAGTGCTGGTAC-TGGCCC-TGTATTCGCCCCCTATCCCTCATGAAATC-
258 CACATGATGTGCAATGAGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCGCATCAAACCT
*
4470000 TCAGAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTA-AGGGTTTGCGGCCAGTAGCCATTAA
323 TCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATA-GGTTTCCGGCCAGTAGCCATTAA
*
4470063 AGTGTCTTAAATGGGCACACTTTTTTCCAAATGGTCACAAAATCTTGTTAAACTTC-AAGTTTTT
387 AGTGTCTGAAATGGGCACACTTTTTT-CAAATGGTCACAAAATCTTG-TAAACTTCGAA-TTTTT
* * * * *
4470127 AGCTGAATTTTTTTGTGCACGCCAAG-AAAAATACAAGGATCA-GTCTACCAAGTTT-GGGCCAA
449 AGCTAAATTTGTTTGTGAACGCC-AGCAAAAATACAAGGATCACCTCTACAAAGTTTGGGGCCAA
* * * * * *
4470189 AACTCCTTCC-GAAAAAGTTT-AAAAAATCTCGAACCGCTAAAAAGTT-GAAAATCGTGAAAAAT
513 AACCCCCTCCTAAAAAAGTTTAAAAAAACCT-GAACCGC-AAAAAGTTCAAAAATCATGAAAAAT
* * *
4470251 AGTAAACGAGTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
576 AGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * **
4470316 AAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACC
641 AAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGAAATGCCTAAACCCACC
4470371 GACCACCCTA
Statistics
Matches: 610, Mismatches: 64, Indels: 39
0.86 0.09 0.05
Matches are distributed among these distances:
688 8 0.01
689 141 0.23
690 68 0.11
691 66 0.11
692 70 0.11
693 8 0.01
694 41 0.07
695 32 0.05
696 9 0.01
701 1 0.00
704 2 0.00
706 36 0.06
707 53 0.09
708 75 0.12
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (700 bp):
ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACACTCGTTTCGTTGGTTGACTTAGGCATACGGA
GTTCATTCCCAATCTAAACATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
CGGCAGCACATGCTGGGCTCCAGCATGTGTTGGCGCCATATTTTTCTTCGACAGGGACATCGCAT
CGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGCGGGTGTGCACAC
ATGATGTGCAATGAGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCGCATCAAACCTTCA
GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTCCGGCCAGTAGCCATTAAAGTG
TCTGAAATGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAATTTTTAGCTAAA
TTTGTTTGTGAACGCCAGCAAAAATACAAGGATCACCTCTACAAAGTTTGGGGCCAAAACCCCCT
CCTAAAAAAGTTTAAAAAAACCTGAACCGCAAAAAGTTCAAAAATCATGAAAAATAGAAAACGAG
TCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
AATGGCATTGGCACACAAAAATATGAAGAAATGCCTAAACCCACCTTGGG
Found at i:4471527 original size:26 final size:26
Alignment explanation
Indices: 4471497--4471549 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4471487 GTTGACTTAG
*
4471497 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
4471523 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
4471549 G
1 G
4471550 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:4472418 original size:26 final size:26
Alignment explanation
Indices: 4472382--4472437 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
4472372 TGGGTTGACT
*
4472382 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
*
4472408 TAAGTATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
4472434 TAAG
1 TAAG
4472438 ACCGGACTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:4473189 original size:15 final size:15
Alignment explanation
Indices: 4473166--4473203 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
4473156 ACCGAAGGGT
*
4473166 GCAGCAGGATAGGCA
1 GCAGTAGGATAGGCA
4473181 GCAGTAGGATAGGCA
1 GCAGTAGGATAGGCA
4473196 GCATGTAG
1 GCA-GTAG
4473204 AGGAGCACCC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 17 0.81
16 4 0.19
ACGTcount: A:0.32, C:0.16, G:0.39, T:0.13
Consensus pattern (15 bp):
GCAGTAGGATAGGCA
Done.