Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 33 of 129
Found at i:4474209 original size:26 final size:26
Alignment explanation
Indices: 4474180--4474232 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4474170 GTTGACTTAG
4474180 GCATACAGAGTTCATACCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
* *
4474206 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
4474232 G
1 G
4474233 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAGTCTAA
Found at i:4474555 original size:904 final size:900
Alignment explanation
Indices: 4469687--4477615 Score: 8911
Period size: 878 Copynumber: 8.9 Consensus size: 900
4469677 CCACCTTGGG
* * * *
4469687 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGATTGACTTAGGCATACGGA
1 ATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * * * * *
4469752 GTTCATTCCCAATCTAAACATA-TGAGTTCATTCCCAGTCTAAGATCGGATCAGA-CGAGGGTTG
66 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTA
** * *
4469815 CGGCAGCACATGCTGGGCTCCAGCATGTGTTTGGGTG-CGTATTTTTCTTCGTCAGGG---CA-C
131 CGGCAGCACATGCTGGGCTCGGGCATGTG-TT-GGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * *
4469875 ------CATCGCCAGA-AACCTGACCGGCGGCATTGGGGTTCCGACGATCT-GGGGGCC-GGCGG
194 GTGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAAGAT-TAGGGGGCCGGGGGG
* * * *
4469931 GTGTGCGCACATGATGTGCAATGAGTGCTGGTAC-TGGCCC-TGTATTCGCCCCCTATCCCTCAT
258 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * *
4469994 GAAATCTC-AGAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTA-AGGGTTTGCGGCCAGTAG
323 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-GGTTTGCTGCCAGTAG
* * * *
4470056 CCATTAAAGTGTCTTAAATGGGCACACTTTTTTCCAAATGGTCACAAAATCTTGTTAAACTTCAA
387 CCATTAAAGTGTCTGAAATGGGGACACTTTTTT-CAAATGGTCACAAAATCTTG-TACACTTCGA
* *
4470121 GTTTTTAGCTGAATTTTTTTGTGCACGCCAAGAAAAATACAAGGATCA-GTCTACCAAGTTT-GG
450 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * *
4470184 GCCAAAACTCCTTCCG-AAAAAGTTTAAAAAATCTCGAACCGCTAAAAAG-TT-GAAAATCGTGA
515 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCG-TAAAAAGTTTCAAAAATCATGA
* *
4470246 AAAATAGTAAACGAGTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAA
579 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
** *
4470311 TTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCGACCA
644 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
4470376 CCCTATCAATCCACGGCTTGCGTATCCCGCCTCTCTGGCCGAC-ATAGT---GCCCGCCCACCCG
709 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGA-AGTGCCGCCCGCCC-GCCG
* * * *
4470437 CCCGCCCGCTCGATTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACC
772 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * *
4470502 AGACCGAGGGTTGCGACAACAGGATTGCCAGA-ACGCAGAGGGGGTCCC-AGTCGATCCCCAACT
837 AGACCGAGGGTTGCGGCAGCAGGA-T--C-GACACGTAGAGGGGGACCCGA-CCGAT-CCCAGCT
4470565 TGCGC
896 TGCGC
* * ** * *
4470570 ATCCCGCCCCTCTGGTC-GCTGAGCGTCCGTACGCTCGTTTTGTGGGTTGAC-T-----TA--G-
1 ATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
*
4470625 G--CA-T---A--C---G---A---AGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTG
66 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTA
* * * * ** * *
4470673 TGACAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCAC
131 CGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-G
* ** * * ** ** *
4470738 CGGAGCATCATCGAAGAACCTGACCGGCAGCATTGGGGTTTAGGGGATCAGGGGGGCC-GGGGGG
195 TGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAAGATTA-GGGGGCCGGGGGGG
* *
4470802 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGTCCCCCTATCCCTCATC
259 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
4470867 AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGTCAGTAGCC
324 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
4470932 ATTAAAGTATCTAAAATGGGGACACTTTTTTCAAATGGTCACTAAATCTTGTACACTTCGAGTTT
389 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
4470997 TTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCCA
454 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * * *
4471062 AAACTCCTTCTGAAAAAAATTTAGAAAATCCCAAACTGCAAAAAGTTTTAAAAATCATGAAAAAT
519 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
* * *
4471127 AGAAAATGAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCAATGTATGAATTTAC
584 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*
4471192 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
649 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * * *
4471257 TCGATCCATGGCTTGTGCATCCTGCCTCTCTGGCCG--G-CGTACTGCCCG--C-CCGCCCGCCC
714 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTGCCGCCCGCCCGCCGCCCGCCC
* * * ** * *
4471316 GCTCGTTTCGTCGGTTGGTTTAGGCATGCAGAGTTCATTCATAGTCTAAGATCGGACCGGACCGA
779 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* * * * ** * * *
4471381 GGGTTGTGGTAGCAAGATCAACAGCACACAGAGGGGGACCCGATCGATCCCCGACTTGTGC
844 GGGTTGCGGCAGCAGGATC--GA-CACGTAGAGGGGGACCCGACCGATCCCAG-CTTGCGC
* * * * *
4471442 ATCCCGCCCC-CTGGCCTGCTGAGCACCCGCAGGGTCGTTTCATGGGTTGACTTAGGCATACGGA
1 ATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * *
4471506 GTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
66 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTA
* *
4471571 TGGCAGCACATGCTGGGCTCAGGCATGTGATT-GTGCCGCATTTTTC-T--TC---G--CCA---
131 CGGCAGCACATGCTGGGCTCGGGCATGTG-TTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* ** * *
4471624 --GAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACTATCAGGGAGGCCAGGGGGG
195 TGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAAGATTAGGG-GGCCGGGGGGG
* **
4471687 TGTGCGCGCATGATGTTTGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATC
259 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
4471751 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGTGATTTTACATGTTTGCTGCCAGTAGCC
324 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
4471816 ATTAAAGTGTCTAAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
389 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
*
4471881 TTAGCTGAATTTTTTTGTGCTTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
454 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * **** * *
4471946 AACCACCATCCGAAAAAATTTTTAAAAATCTTGGACCGCAAAAAGTTTCAAAAATCGTG-AAAAT
519 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
* *
4472010 AGAAAACGAGTAGTCTTGCCATGAAACTTCACGTGACGGCTTAAGGGACCATTGTATGAATTTAC
584 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
4472075 AAGCCATAAAAATGGCATTGGTACACAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTA
649 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * *** * *
4472140 TCGATCCACGGCTTGTGCATCCCGCCTCTCTGGCTG--G-AGTAATGCTCGCCCGCCTACCCGCC
714 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTGCCGCCCGCCCGCC-GCCCGCC
* * ** *
4472202 CGCTCGTTTAGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAAGATTGGACCAGACCA
778 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * * * * ** * *
4472267 AGGGTTGCAGCAGCAGGATTGATAACACGCAGAGGGGTACTCGGTCGATCCCCGACTTACGC
843 AGGGTTGCGGCAGCAGGATCG---ACACGTAGAGGGGGACCCGACCGATCCCAG-CTTGCGC
* ** *
4472329 ATCCTGCCCCTCTGGCCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGA
1 ATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * **
4472394 GTTCATTCCTAGTCTAAGTATACGGAGTTCATTCCCAGTCTAAGACCGGACTAGACCAAGGGTTA
66 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTA
* * * *
4472459 CGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGT
131 CGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
* * * * * *
4472524 CGGAGCATCTCCGGAGAACCTAACTGGCGGCATTGGGGTTTCGGAGATTGGGGGAGCCGGGGGGG
196 -GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAAGATTAGGGG-GCC-GGGGGG
* * *
4472589 GTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTAACCCTCAT
258 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * *
4472654 CAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGATGCCATTAGC
323 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
4472719 CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTT
388 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
4472784 TTTAGCTGTATTTTTTTGTGCATACCAAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
453 TTTAGCTGAATTTTTTTGTGCATGCC--AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* ** *** *
4472849 CCGAAACTCCTTTTGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTT-GAAAATCATGAAA
516 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAA
* *
4472913 AATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATT
581 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * * *
4472978 TACAAGCCATGAAAATGGCATTGGCATGTAGAAATATGAAGA--TG--T--A--C-CTTAACACC
646 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
*
4473034 CTATCGATCCACGGCTTGTGCATCCCG-CTTCTCTGGCCG--GTATAGT---GCCCG--C-CCGC
711 CTATCGATCCACGGCTTGCGCATCCCGTC-TCTCTGGCCGACG-A-AGTGCCGCCCGCCCGCCGC
* * **
4473090 CCGCCCGCTCGTTTCGTCGGTTGGCATAGGCATACGGAGTTCATTCCCACTCTAAGATTGGACCA
773 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * * *
4473155 AACCGAAGGGTGCAGCAGGATAGGCAGCAGTAGGATAGGCAGCATGTAGAGGAGCACCCGACCGA
838 GACCG-AGGGT--TGC------GGCAGC---AGGAT-CG-A-CACGTAGAGGGGGACCCGACCGA
*
4473220 TCCCCAGCTTACGC
888 T-CCCAGCTTGCGC
*
4473234 AT-CTCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
1 ATCCT-GCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * * * *
4473298 AGATCATTCCCAGTCTAAACATACAGAGTTCATTCCCAGTCCAAGATCGGACTGAACCAAGGGTT
65 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTT
* * * * * * * *
4473363 GCGACAGCACATGCTGGGCTTGGGAATGTGCTGGTGCCGCATTCTTCTTCGTTGAGG---CA-C-
130 ACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * * *
4473423 -----CATCGCCGGAGAACCTGATCGACGGCATTGGGGTTCCGACGA-TCGGGGGCC-GGGGGGT
195 TGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAAGATTAGGGGGCCGGGGGGGT
* * *
4473481 GTGCGCACACGATGTGGGATGGGTGCTGGTACTTGGGCCTTATATTGGCCCCCTATCCCTCATCA
260 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
4473546 AACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCA
325 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
4473611 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTTCACTTCGAGTTTT
390 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
4473676 TAGCTGAATGTTTTTGTCCATGCCAAAAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAA
455 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* **
4473741 AACTCCTTCCGAAAAAATTATAAAAAATCCCAAACCGCCAAAAGTTTCAAAAATCATGAAAAATA
520 AACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
* * * * *
4473806 CAAAACGAGTCGTTTTGGCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTACGAATTTACA
585 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
4473871 AGCCATAAAAATGGCATTGGCACACAGAGATATGAAGATGTGCCTAAACCCACCTACAACCCTAT
650 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
*
4473936 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTGCCGGCCCGCCCGCTCGCCCGCA
715 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTGCC-GCCCGCCCGC-CGCCCGCC
* * * **
4474001 CGCTCGTTTCGTTGGTTGGCTTAGGCATATGTAGTTCATTCCCAGTCTAAGATCAGACTGGACCG
778 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * * * * * * *** *
4474066 AGGGTTGCAGTAGTAGGATCGATA-GTGGAGAGGTACCCGGTTGATCCTCAGCTTACGC
843 AGGGTTGCGGCAGCAGGATCGACACGTAGAGGGGGACCCGACCGATCC-CAGCTTGCGC
* * ** * * * *
4474124 ATCCTTCCCCTCTAGCCTACTGAGCACCCGCTCGCTCGTCTCATGGGTTGACTTAGGCATACAGA
1 ATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * *
4474189 GTTCATACCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCCAGGGTTA
66 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTA
* * * ** **
4474254 TGGCAGCACATGTTGGGTTCGGGCATGTGTTGGTTTCGCATTTTTCTTCGTCGGGGTGCCATCGC
131 CGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-
* *
4474319 TGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAAGATTAAGGGGCCGGGGGGGG
195 TGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAAGATTAGGGGGCC-GGGGGGG
*
4474384 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATC
259 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* ***
4474449 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTATAAGTAGCC
324 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
4474514 AATAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGCCA
389 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC--G---
* *
4474579 TTAAAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGT
449 ----AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* *
4474644 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC
510 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATC
*
4474709 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
575 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
4474774 TGAATTTACATGCCATAAAAATGGCATTGGCACGCAGAAATATGAACATGTGCCTAAACCCACCT
640 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * * *
4474839 ACCACCCTATCGATCCA---C--G-GCACCCCGTGTCTCTGGGCGGCGTAGTG-C-CCGGCCTC-
705 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTGCCGCCCGCC-CG
* * * *
4474895 CCGGCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAATCTAAGATCAG
769 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * *
4474960 ACCGGACTGAGGGTTGTGGCAGCAAGATCGGCAGCACGTAGAGGGGGACCCGACTGATCCCCGGC
834 ACCAGACCGAGGGTTGCGGCAGCAGGATC-G-A-CACGTAGAGGGGGACCCGACCGAT-CCCAGC
4475025 TTGCGC
895 TTGCGC
* * * * * * *
4475031 ATCCCAG-TCCTC-GGCTGGTTGAGCACCCGTACGCTCGTTTTGTGGGTTGATTTAGGCATACGG
1 AT-CCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * *
4475094 AGTTCATTCCCAGTCTAAGCACACGGAGTTCATTCCCAGGCTAAGATCGGACCAGACCGAGGGTT
65 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTT
* * **
4475159 ACAGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCGTCGGGGCACCATCG
130 ACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* ** * * * **
4475224 TCGAGGCATCATCGAAGAACCTGACTGGCGGCACTGGGGTTCC-AACGATCGGGGGGGCC--GGG
195 TGGA-GCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAA-GAT-TAGGGGGCCGGGGG
*
4475286 GGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
257 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
4475351 TCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAA
322 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
4475416 CCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGT
387 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
*
4475481 TTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
452 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
**
4475546 CAAAACTCCTTCCGAAAAAAATTTTAAAAAAT-CCAGAACCGTAAAAAGTTTTGAAAATCATGAA
517 CAAAACTCCTTCCG-AAAAAATTTTAAAAAATCCCA-AACCGTAAAAAGTTTCAAAAATCATGAA
* * * * *
4475610 AAATCGAAAACGAATCGTCTTGCCGTGAAACTTCACTTGAAGGCTTAAGGGAACATTGTATGAAT
580 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * * *
4475675 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAAAAAGAAGATGTGCCTAAACCCACCTCCCAC
645 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * *
4475740 CCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTA-TG--G-CCGCCCGCCCGTC
710 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTGCCGCCCGCCCG-CCGCC
* * * * *
4475801 CGCTCGCTCGTTTCGTCAGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATCAGATCAA
774 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * *
4475866 ATCAAGGGTTGCGGTAGTAGGATCGACAGCACGTAGAGGGGGACCCGGCCGATCCTCGGCTTGCG
839 ACCGAGGGTTGCGGCAGCAGGATCG--A-CACGTAGAGGGGGACCCGACCGATCC-CAGCTTGCG
4475931 C
900 C
* * * * * * *
4475932 AGCGTCGCCCCTCTGGCCGGCGGAGCACTCGCACGCTTGTTTCATGGGCTGACTTAGGCATACGG
1 ATCCT-GCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * *
4475997 ACTTCATTCCTAG--T---C-TA---AG---------AG-C--AGATTGGACC-G----AGGGTT
65 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTT
** * * * * *
4476036 ACGATAGCAAATGCTGGGCTCGGGCATGTGTTGGTGTCACATTTTTTTTCG-CTGAGGCACCATC
130 ACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATC
* * * * ** **
4476100 GTCGGAGCATCGCCGGAGAACCTAACCGCCGGCATTGGGGTTTCGACGATCGGGGGGGCCGAAGG
194 GT-GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAAGAT-TAGGGGGCCGGGGG
* *
4476165 GGTGTGCGCACATGATGTGCGATGGTTGCTGGTA-TGTGGCCCTTATATTGGCCCCCTATCTCTC
257 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT-TGGCCCTTATATTGGCCCCCTATCCCTC
* *
4476229 ATCAAACCTCAAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
321 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
4476294 GCCATTAAAGTGTCT-AAATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTACG
386 GCCATTAAAGTGTCTGAAA-TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-CG
* * *
4476358 AGTTTTTAGCTGAATTTTTTAGTGCATGCCAACAAAAATACAAAGATCAAGTCTACCAAGTTTGG
449 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * *
4476423 GGCCAAAACTCCTTCCGAAGAAATTTTAAAAAATTCGAAACCGTAAAAAGTTTCAAAAATCATAA
514 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGA
*
4476488 AAAATAGAAAACGAGT-GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAA
579 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
4476552 TTTACAAGCCATAAAAATGGCATTGGCACGTAGAGATATGAAGATGTGCCTAAACCCACCTACCA
644 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * ** *
4476617 CCCTATCGATCCACGGCTTACGCATCCCGTCTCTTTGGTCGGTGTAGT---GCCCGCCCGCCCGC
709 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTGCCGCCCGCCCG-CCGC
* * * * * * * ** ***
4476679 CTGCCCACTCATTTTGTCAGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAAGATTGGATTG
773 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
** ** * *
4476744 GATTGAGGGTTATGGCAGCAGGATCGACAGCACTCAGAGGGGGACCCGACTGATTCCC-GACTTG
838 GACCGAGGGTTGCGGCAGCAGGATCGACA-C-GT-AGAGGGGGACCCGACCGA-TCCCAG-CTTG
4476808 CGC
898 CGC
** * ** *
4476811 ATCCTGCCAGTTTGGCCGGCTGAGC-CCCGCACGCTCGTTTTATGGGTTGACGTAGGCATACGGA
1 ATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
*
4476875 GTTCATTCCCAGTCTAAG-AT--TG-G---------A--C-----T-GGA-C--A--AAGGGTTA
66 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTA
** * *
4476914 CGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTTTCGCATTTTTCTTCGTTGAGGCACCATCGT
131 CGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-
* * *
4476979 TGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGAAGATCAGGAGGGCCGGGGGGG
195 TGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAAGATTAGG-GGGCCGGGGGGG
* *
4477044 TTGTTCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCAT
259 -TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * *
4477109 CAAACCTCGAGAACTCACACTCCCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTGTCAGTAGC
323 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
4477174 CATCAAAGTCTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
388 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * **
4477239 TTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTTCCAAGTTTGGTTCC
453 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * **
4477304 AAAACTCCTACCGAAAAGATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAA
518 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAA
* * * *
4477369 TAGAAAACGACTTGTCTTGCCGTGAAACTTCGCGTG-AGTGCTTAAGGGACCATTGTATGAATTT
583 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG-GCTTAAGGGACCATTGTATGAATTT
* * *
4477433 ACTAGCCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
647 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * *
4477498 TATCGATCCGCGGCTTTCGCATCCCGTCTCTCTGGTCGTCGTAGT---GCCCGCCCGCCCGCCCA
712 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTGCCGCCCGCCCG-CCGCCCG
* * * *
4477560 CCAGCTCGTTTTGTCGGTTGGCTTAGGCATATGTAGTTCATTCCCAGTCTAAGATC
776 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
4477616 GGAACGGAGA
Statistics
Matches: 6083, Mismatches: 743, Indels: 445
0.84 0.10 0.06
Matches are distributed among these distances:
856 4 0.00
857 46 0.01
858 32 0.01
859 1 0.00
860 2 0.00
861 1 0.00
865 1 0.00
867 1 0.00
868 6 0.00
869 28 0.00
870 46 0.01
871 16 0.00
872 219 0.04
873 69 0.01
874 73 0.01
875 23 0.00
876 180 0.03
877 403 0.07
878 553 0.09
879 348 0.06
880 86 0.01
881 4 0.00
882 41 0.01
883 189 0.03
884 288 0.05
885 53 0.01
886 2 0.00
887 118 0.02
888 221 0.04
889 111 0.02
890 389 0.06
891 7 0.00
892 6 0.00
893 74 0.01
894 50 0.01
895 85 0.01
896 179 0.03
897 54 0.01
898 124 0.02
899 5 0.00
900 13 0.00
901 158 0.03
902 90 0.01
903 182 0.03
904 539 0.09
905 211 0.03
906 436 0.07
907 59 0.01
908 5 0.00
910 1 0.00
913 251 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
ATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTA
CGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAAGATTAGGGGGCCGGGGGGGTG
TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
ACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTGCCGCCCGCCCGCCGCCCGCCCGC
TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
GTTGCGGCAGCAGGATCGACACGTAGAGGGGGACCCGACCGATCCCAGCTTGCGC
Found at i:4479469 original size:903 final size:901
Alignment explanation
Indices: 4477594--4481928 Score: 5757
Period size: 901 Copynumber: 4.9 Consensus size: 901
4477584 AGGCATATGT
* * ** *
4477594 AGTTCATTCCCAGTCTAAGATCGGAACGGAGAGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * * ** * * *
4477659 TTTGTTGGTGCCAG-ATTTTTCTTTGCCAGGGCACCATCGTTGAAGCATCGCCAGAGAACCTGAC
66 TGTGTTGGTGCC-GCATTTTTCTTCGTCGGGGCACCATC-CCGGAGCATCGTCGGAGAACCTGAC
* * *
4477723 CGGCGGCATTTGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGCGCACACATGATGTGCGATGGG
129 CGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
4477788 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCAAGAACTCACACCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCT
* * *
4477853 TAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCTATTAAAGTGTCTGAAATGGGGACA
258 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
4477918 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGC
323 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
4477983 CAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAGAACTCCTACTGTAAAAATTTTAA
388 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAATTTTAA
* * * * *
4478047 AAAATCCCAAACCGTGAAAAGTTTCAACAATCATGAAAAATAAAAAATGAGTCATCTCGCCATGA
452 AAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGA
* * * *
4478112 AAGTTCACGTGAAGGCTTAACGGACCATTCTATGAATTTACAAACCATAAAAATGGCATT-GCAT
517 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
4478176 GCAAAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGGCTTGCGCATCCCG
582 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGCGCATCCCG
* * * * * *
4478241 CCTCTCTGGTCGGCGTAGTGCCCTCCTGCCCGCTCGCCCGCTCGTTTCATCGGTTGGCTTAGGCA
647 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * ** * * * *
4478306 TACGAAGTTCATTCCCAGTCTAAGACTGGATCAGACCGAGGGTTGCAGTAGCAAGATCGGTAGCA
712 TACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGGCAGTAGGATCGGCAGCA
* *** * * *
4478371 CGTAGAGGGGGACCCGGTTGATCCCCGACTTGCGCATCCTGCCCTTCTGGCCAGCTGAGCACCCG
777 CGTAGAGGGAGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCG
* * * * *
4478436 CACGTTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTATATGA
842 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAGA
* * * ** *
4478496 AGTTCATTCCCAATCTAAGATTGGACCGGACCGAGGGTTATGGCAGCACATGCTGGGCTTGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * *
4478561 TGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCGTCGGAGAACTTGACC
66 TGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CCGGAGCATCGTCGGAGAACCTGACC
* *
4478626 GGCGGTATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGG
130 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGG
* *
4478691 TTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTACACCCCTT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTT
* *
4478756 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAAATTAAAGTGCCTGAAATGGGGACA
259 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC-CATTAAAGTGTCTGAAATGGGGACA
* *
4478821 CTTTTTCCAAATGGTCACAACATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
323 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* ** **
4478886 CAACAAAAATACAAGGATCATGTCTACCATCTTTACGGCCAAAACTCCTTCTGAAAAAATTTTAA
388 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAATTTTAA
* * *
4478951 GAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGA
452 AAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGA
4479016 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
517 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
*
4479081 GCAGAAATATGAAGATGTGCCTAAGCCCACCTACCAACCTATCGATCCACGGCTTGCGCATCCCG
582 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGCGCATCCCG
* * * * **
4479146 TCTCTCTGGCCGGTGTAGTACCCGCCCGCCCGCCCGTCCGCTCATTTCGTATGTTGGCTTAGGCA
647 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * *
4479211 TACGGAATTCATTCGCAATCTAAGATTGGACCAGACTGAGGATTGTGACAGTAGGATCGGCAACA
712 TACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGGCAGTAGGATCGGCAGCA
* * * ** * *
4479276 CATAGAGGGAGAACCGACCAATCCTTGGCTTGTGCATCCCGCCCCTCTGGCCGG-TGAGCACCCG
777 CGTAGAGGGAGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCG
* *
4479340 CACGCTCGTTTCGTGGGTTGACATAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAG-
842 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-AGA
* * *
4479400 AGTTCATTCCCAGTC-AGGATCGGACCAGACCGAGGGTTGCAGTAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * *
4479464 TGTGTTGGTGCCACATTTCTCTTCGTCGGGGCACCATCCCCGGAGCATCGCCGGAGAACCTGACC
66 TGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT-CCCGGAGCATCGTCGGAGAACCTGACC
* *
4479529 GGCGGCATTGGGGTTCCGATGATCGGGGGGGCC-AGGGGGTGTGCGCACATGATGTGCGATGGGT
130 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
4479593 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCGCACCCTCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC-CTT
* * *
4479657 AAAGAGCATTGGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACGC
259 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
4479722 TTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
324 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
4479787 AACAAAAATACAAGGATCACATCTACCAAGTTTGGGG-CAAAACTCCTACCAAAAAATTTTTTAA
389 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAA-TTTTAAA
* * ** * *
4479851 AAATCCCTAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
453 AAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAA
*
4479916 ACTTCACGT-AAGGGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
518 ACTTCACGTGAA-GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
4479980 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCTG
582 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGCGCATCCCG
* * * * * * *
4480045 TCTCTCTGGCCGACATAGTGCCCGCCCACCCGCCTGCCCGCTTGTTTCATCAGTTGGCTTAGGCA
647 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
** * *
4480110 TACGGAGTTCATT-CCAGGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGTAGGATTGGCAGC
712 TACGGAGTTCATTCCCA-GTCTAAGATTGGACCAGACTGAGGGTTGTGGCAGTAGGATCGGCAGC
* * * * * ** * *
4480174 ATGCAGAGGGGGACCCGACCGATCCCCGACTTGTGCATCTCGTACCTCTGGTCGGTTGAGCACCC
776 ACGTAGAGGGAGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
* *
4480239 GCACGCTCGTTTCGTGGGTCGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGA
841 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAGA
** * *
4480300 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTGGCACATGATAGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
*
4480365 TGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
66 TGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CCGGAGCATCGTCGGAGAACCTGACC
** * * * * *
4480430 AACGGCATTGGGTTTTCGACGATCGGGGGGGCC-GGGGGGTGTGTGCACATGACGTACGATGGGT
130 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
4480494 GCTGGTACTTGGCTCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTA
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTA
* *
4480559 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGTGGACACT
260 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
4480624 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCA
325 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * *
4480688 ACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGACAAAAATCATTCCAAGAAAATTTTAAAA
390 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAA-AAAATTTTAAAA
* * * *
4480753 AATCTCGAACCGTAAAAAGTTTCAAAAATCAGGAAAAATAGAAAATGAGTCATCTTGCCTTAAAA
454 AATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAA
4480818 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
519 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
4480883 AGAAATATGAAGATGTGACTAAACCCACCTACCAACTTATCGATCCACGGCTTGCGCATCCCGTC
584 AGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGCGCATCCCGTC
* *
4480948 TCTCTGGTCGACGTAGT----GCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
649 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* ** * * * * *
4481008 TGGAGTTCATTCCCAGTCTAAGATCAGACC-GAATCGAGGGTTGCGGTAGCAGGATCGACAGCAC
714 CGGAGTTCATTCCCAGTCTAAGATTGGACCAGACT-GAGGGTTGTGGCAGTAGGATCGGCAGCAC
* * * *
4481072 GTAGAAGG-GACCGGCCGTCGATCCCTCG-CTTGCGCATCCTTG-CCCTCTGGCCGGCTGAGCAC
778 GTAGAGGGAGACCCGAC--CGATCCC-CGACTTGCGCATCC-CGCCCCTCTGGCCGGCTGAGCAC
4481134 CCGCACGCTCGTTTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-T-A-A
839 CCGCACGCTCG-TTT-CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAGA
4481191 AG---A-T--CAG----A-AT-------GA-C-A-GG-TGCGGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* *
4481234 TGTGTTGGTGTCGGCATTTTTCTTCGTCGGGG---C-T-CC----CATCGTCGAAG-ACCTGACC
66 TGTGTTGGTG-CCGCATTTTTCTTCGTCGGGGCACCATCCCGGAGCATCGTCGGAGAACCTGACC
* * * *
4481289 -GCGGCATTGGGGTTTCGAAAGATC-AGGGGGCTGGAGGGGGTGTGCGCACATGATGTGCGATGG
130 GGCGGCATTGGGGTTCCG-ACGATCGGGGGGGCCGG-GGGGGTGTGCGCACATGATGTGCGATGG
*
4481352 GTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
193 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCC
* *
4481417 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAGTGTTTGAAATGGGGAA
257 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
4481481 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTATGCATG
322 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * * *
4481546 CCAATAAAAAAACATGGATCACATGTACCAAGTTTGGGGTCAAAACTCCTTCCGAAAAAATTTTA
387 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTA
** * * * *
4481611 AAAAATCTCAAACTATAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCGTG
451 AAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATG
* *
4481676 AAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCG
516 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
4481741 TGCTGAAATATGAAGATGTGCCTAAACCCACCTACC-ATCTATCGATCTACGGCTTGCGCATCTC
581 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGCGCATCCC
* * *
4481805 GTCTCTCTGGCCAGCGTAGTGCCCG-CCG-CCGCCCACCCGCCCTCATTTCGTCGGTTGGCTTAG
646 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCG--CTCGTTTCGTCGGTTGGCTTAG
* * * *
4481868 GCATAGGGAGTTCATTCCCAGTCTAAGATTGGATCAGA-TCGAGGGTTGTGGTAGCAGGATC
709 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACT-GAGGGTTGTGGCAGTAGGATC
4481929 ACTTAGGCTT
Statistics
Matches: 3056, Mismatches: 335, Indels: 121
0.87 0.10 0.03
Matches are distributed among these distances:
858 21 0.01
859 14 0.00
860 198 0.06
861 265 0.09
862 6 0.00
863 9 0.00
864 2 0.00
865 74 0.02
866 3 0.00
867 1 0.00
869 33 0.01
870 22 0.01
871 1 0.00
872 1 0.00
873 2 0.00
880 2 0.00
881 1 0.00
885 3 0.00
887 1 0.00
888 1 0.00
891 3 0.00
893 1 0.00
894 1 0.00
895 9 0.00
896 84 0.03
897 56 0.02
898 16 0.01
899 379 0.12
900 256 0.08
901 643 0.21
902 199 0.07
903 299 0.10
904 242 0.08
905 208 0.07
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (901 bp):
AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
TGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCCGGAGCATCGTCGGAGAACCTGACCG
GCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAA
TCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGGCAGTAGGATCGGCAGCACGTA
GAGGGAGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAGA
Found at i:4481977 original size:26 final size:26
Alignment explanation
Indices: 4481938--4481987 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
4481928 CACTTAGGCT
* * *
4481938 TACGGAGTTTATTCCCAGTCTAAGCA
1 TACGGAGCTCATTCCCAGCCTAAGCA
4481964 TACGGAGCTCATTCCCAGCCTAAG
1 TACGGAGCTCATTCCCAGCCTAAG
4481988 ATCAGACCAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGCTCATTCCCAGCCTAAGCA
Found at i:4482754 original size:800 final size:798
Alignment explanation
Indices: 4481207--4483523 Score: 3654
Period size: 800 Copynumber: 2.9 Consensus size: 798
4481197 GAATGACAGG
* * * ** *
4481207 TGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCGGCATTTTTCTTCGTCGGGGCTCCCA
1 TGCGGCAGCACACGCTGGGCTCGAGCATGTGTTGGTG-CCGCATTTTTCTTCACCGGGGC-ACCA
* * * ** *
4481272 TCGTC-G-AAGACCTGACCG-CGGCATTGGGGTTTCGAAAGATC-AGGGGGCTGGAGGGGGTGTG
64 TCGTCAGTGA-ACCTGATCGACGGCATTGGGGTTTTGGCA-ATCGAGGGGGCCGG-GGGGGTGTG
* *
4481333 CGCACATGATGTGCGATGGGTGCA-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
126 CGCGCATGATGTGCGATGGGTG-ATGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAA
* *
4481397 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
190 CCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATT
* * *
4481462 -AAGTGTTTGAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
255 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTA
* * * * *
4481526 GCTAAATTTTTTT-ATGCATG-CCAATAAAAAAACATGGATCACATGTACCAAGTTTGGGGTCAA
320 GCTAAATTTTTTTGA-GCATGCCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * *
4481589 AACTCCTTCCGAAAAAATTTTAAAAAATCTC-AAACTATAAAAAGTTTCAAAAATCGTGAAAAAT
383 AACTCTTTCTGAAAAAATTTTAAAAAATCCCGAACCT-TAAAAAGTTTCAAAAATCGTGAAAAAT
* * *
4481653 AAAAAATGAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTAC
447 AGAAAACGAGTCGTCTTGCC-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
4481718 AAGCCATAAAAATGGCATTGGCGTGCTGAAATATGAAGATGTGCCTAAACCCACCTACCAT-CTA
511 AAGCCATAAAAATGGCATTGGCGTGCTGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTA
* * *
4481782 TCGATCTACGGCTTGCGCATCTCGTCTCTCTGGCCAGCGTAGTGCCCGCCGCCGCCCACCCGCCC
576 TCGATCTACGGCTTGCGCATCTCATCTCTCTGGCCAGCGTAGTGCCCG-C-CCGTCCACCTGCCC
*
4481847 TCATTTCGTCGGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATTGGATCAGATCGAGG
639 TCATTTCGTCGGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGG
* *
4481912 GTTGTGGTAGCAGGATCACTTAGGCTTACGGAGTTTATTCCCAGTCTAAGCATACGGAGCTCATT
704 GTTGTGGTAGCAGGATCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGCTCATT
4481977 CCCAGCCTAAGATCAGACCAGCTCGAGGGT
769 CCCAGCCTAAGATCAGACCAGCTCGAGGGT
4482007 TGCGGCAGCACACGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATC
1 TGCGGCAGCACACGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATC
4482072 GTCAGTGAACCTGATCGACGGCATTGGGGTTTTGGCAATCGAGGGGGCCGGGGGGGTGTGCGCGC
66 GTCAGTGAACCTGATCGACGGCATTGGGGTTTTGGCAATCGAGGGGGCCGGGGGGGTGTGCGCGC
4482137 ATGATGTGCGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGA
131 ATGATGTGCGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGA
4482202 GAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTG
196 GAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTG
4482267 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTAAA
261 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTAAA
*
4482332 TTTTTTTGAGCGTGCCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTT
326 TTTTTTTGAGCATGCCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTT
*
4482397 CTGAAAAAATTTTTAAAAAATCCCGAACCTTAAAGAGTTTCAAAAATCGTGAAAAATAGAAAACG
391 CTGAAAAAA-TTTTAAAAAATCCCGAACCTTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* *
4482462 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTCTGAATTTACAAGCCAAA
455 AGTCGTCTTGCC-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
4482527 AAAATGGCATTGGCGTGCTGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCTA
519 AAAATGGCATTGGCGTGCTGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCTA
* * *
4482592 CGGCTTTCGCATCTCATCTCTCTGGCCAGCGTAGTGCCCGCCCGTACACCTGCCCTCATTTCATC
584 CGGCTTGCGCATCTCATCTCTCTGGCCAGCGTAGTGCCCGCCCGTCCACCTGCCCTCATTTCGTC
*
4482657 GGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGTGGTAG
649 GGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGTGGTAG
4482722 CAGGATCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGCTCATTCCCAGCCTAA
714 CAGGATCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGCTCATTCCCAGCCTAA
4482787 GATCAGACCAGCTCGAGGGT
779 GATCAGACCAGCTCGAGGGT
4482807 TGCGGCAGCACACGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATC
1 TGCGGCAGCACACGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATC
4482872 GTCAGTGAACCTGATCGACGGCATTGGGGTTTTGGCAATCGAGGGGGCCGGGGGGGTGTGCGCGC
66 GTCAGTGAACCTGATCGACGGCATTGGGGTTTTGGCAATCGAGGGGGCCGGGGGGGTGTGCGCGC
4482937 ATGATGTGCGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGA
131 ATGATGTGCGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGA
4483002 GAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTG
196 GAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
4483067 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAA
261 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTAAA
* *
4483132 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTT
326 TTTTTTTGAGCATGCCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTT
* *
4483197 CTGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
391 CTGAAAAAATTTTAAAAAATCCCGAACCTTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
*
4483262 GTCGTC-T---TG------CACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAA
456 GTCGTCTTGCCTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
** * * *
4483317 AATGGCATTGGCACG-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAT
521 AATGGCATTGGCGTGCT-GAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCTAC
* * * *
4483381 GGCTTGCGCATCCCATCTCTCTGGCC-GACTTAGTGCCTGCCCGCCCGTCCGCCCTGCCCGCTCG
585 GGCTTGCGCATCTCATCTCTCTGGCCAG-CGTA--G--TGCCCGCCCGTCC-ACCTG-CC-CTCA
* * * * * *
4483445 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCGAATTAGACCTGAAGGT
642 TTTCGTCGGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATTGGATCAGACC-GAGGGT
*
4483510 TGTGG-AGCAAGATC
706 TGTGGTAGCAGGATC
4483524 GACAGCACGC
Statistics
Matches: 1420, Mismatches: 76, Indels: 47
0.92 0.05 0.03
Matches are distributed among these distances:
787 2 0.00
788 127 0.09
790 1 0.00
792 12 0.01
793 4 0.00
794 4 0.00
795 62 0.04
796 10 0.01
798 10 0.01
799 222 0.16
800 748 0.53
801 165 0.12
802 53 0.04
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (798 bp):
TGCGGCAGCACACGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATC
GTCAGTGAACCTGATCGACGGCATTGGGGTTTTGGCAATCGAGGGGGCCGGGGGGGTGTGCGCGC
ATGATGTGCGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGA
GAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTG
TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTAAA
TTTTTTTGAGCATGCCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTT
CTGAAAAAATTTTAAAAAATCCCGAACCTTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
GTCGTCTTGCCTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
AATGGCATTGGCGTGCTGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCTACG
GCTTGCGCATCTCATCTCTCTGGCCAGCGTAGTGCCCGCCCGTCCACCTGCCCTCATTTCGTCGG
TTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGTGGTAGCA
GGATCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGCTCATTCCCAGCCTAAGA
TCAGACCAGCTCGAGGGT
Found at i:4482775 original size:26 final size:26
Alignment explanation
Indices: 4482735--4482787 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4482725 GATCACTTAG
* *
4482735 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGCCTAA
4482761 GCATACGGAGCTCATTCCCAGCCTAA
1 GCATACGGAGCTCATTCCCAGCCTAA
4482787 G
1 G
4482788 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGCCTAA
Found at i:4483654 original size:26 final size:26
Alignment explanation
Indices: 4483625--4483674 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
4483615 GACTTAGGCA
4483625 TACGGAGTTCATTCCCAGTCTAAGCC
1 TACGGAGTTCATTCCCAGTCTAAGCC
*
4483651 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
4483675 ATTGAACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCC
Found at i:4484513 original size:26 final size:26
Alignment explanation
Indices: 4484477--4484529 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4484467 GTTGACTTAG
4484477 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
4484503 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4484529 G
1 G
4484530 ATCAGAATGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4485318 original size:26 final size:26
Alignment explanation
Indices: 4485278--4485330 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4485268 GATCACTTAG
* *
4485278 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGCCTAA
4485304 GCATACGGAGCTCATTCCCAGCCTAA
1 GCATACGGAGCTCATTCCCAGCCTAA
4485330 G
1 G
4485331 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGCCTAA
Found at i:4488211 original size:27 final size:26
Alignment explanation
Indices: 4488115--4488210 Score: 129
Period size: 26 Copynumber: 3.7 Consensus size: 26
4488105 TTATTTTCAC
*
4488115 GATTTTTGAAACTTTTTGCAGTTCGG
1 GATTTTTGAAACTTTTTGCAGTTCGA
* * *
4488141 GATTTTTGAAACTTTTTACAGTTTGTC
1 GATTTTTGAAACTTTTTGCAGTTCG-A
4488168 GATTTTTGAAACTTTTTGCAGTTCGA
1 GATTTTTGAAACTTTTTGCAGTTCGA
* *
4488194 GATTTTTTAAAATTTTT
1 GATTTTTGAAACTTTTT
4488211 TCGGAAGGAG
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 38 0.62
27 23 0.38
ACGTcount: A:0.23, C:0.09, G:0.17, T:0.51
Consensus pattern (26 bp):
GATTTTTGAAACTTTTTGCAGTTCGA
Found at i:4488669 original size:26 final size:26
Alignment explanation
Indices: 4488633--4488685 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4488623 CCGGTCTGAT
4488633 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4488659 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4488685 C
1 C
4488686 CCAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4490485 original size:26 final size:25
Alignment explanation
Indices: 4490456--4490534 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 25
4490446 CCGGTCCAAT
4490456 CTTAGACTGGGAATGAACTCCGTATG
1 CTTA-ACTGGGAATGAACTCCGTATG
* *
4490482 CTTAACCTGGAAAGGAACTCCGTATG
1 CTTAA-CTGGGAATGAACTCCGTATG
*
4490508 CTTAAACTGAGAATGAACTCCGTATG
1 CTT-AACTGGGAATGAACTCCGTATG
4490534 C
1 C
4490535 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
25 1 0.02
26 43 0.93
27 2 0.04
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (25 bp):
CTTAACTGGGAATGAACTCCGTATG
Found at i:4490917 original size:932 final size:925
Alignment explanation
Indices: 4489545--4491430 Score: 2488
Period size: 932 Copynumber: 2.0 Consensus size: 925
4489535 CGATCTTAGC
* * * * **
4489545 CTGGGAATGAACTTCGTATACTTAAACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAA
1 CTGGAAATGAACTCCGTATGCTTAAACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAA
* * * *
4489610 CGAT-CGTGGCGGGCTGCTCAG-CGGCCAGAGGGGCGGGATGCACAAGTCGAGGATGCGACCCAA
65 CG-TGCGT-GCGGGC-GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT-TGA-CC--
* * * *
4489673 GGTTCCCC-TCTGCGTGCTGGCCGATCCATGCTACCGTATACCCATCAGTCTTGGTCCTGATCTT
123 GGGTCCCCTTCTGCGTGCT-GTCGATCC-TGCTACCGCA-ACCC-TCGGTC-TGGTCC-GATCTT
* * *
4489737 AGACTAGGAAATGAACTCCGTATGCCTAAGCCAATCGATG-AACGAGCGGGCGGGCGGGCGTGCA
182 AGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCG-GCG
* * *
4489801 AG--TAACGCACGACCACAGAGAGAC-GAGATGCGCAAGTCGCGTGGATCGATAGGGTGGTAGGT
245 GGCATTACG-TCGACCA-A-AGAGACAG-GATGCGCAAG-C-CGTGGATCGATAGGGTGGTAGG-
* ** * * *
4489863 TGGCTTTAGGCAGCATCTTATATTTCTGTGCTGGCAATGCCATTTTTATGGCTTCTAAAGTCATA
303 TGGGTTTAGGCA-CATCTTATATTTCTACG-TGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
4489928 CAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCATTTTCTATTTTTCAAGA
366 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGA
* * * *
4489993 TTTTCAAAACTCTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGGATGGAGTTTTGGCCCCAAAC
431 TTTTCAAAACTTTTTGCAGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* *
4490058 CTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGT
496 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * *
4490123 TTACAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACTGGCA
561 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
4490188 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
626 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * *
4490253 GGGGCCCAATATAAGGTCCAAGTACCAGCACCCATCACACATCATATGCGCAC-CCCCCCCGGCC
691 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC
*
4490317 CCCCGATCGTCGGAACCCCAATGTCGCCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
756 CCCCGATCGTCGGAACCCCAATGTCGCCGATCAGGTTCTCCGACGATGCTCTGACGATGGTGCCC
* *
4490382 C-AGCGAAGAAAAATGCATCACCAGCACATGCCCAAGCCTAGCATGTGCTGTCGCAACCCTCGGT
821 CGA-CGAAGAAAAATGCAGCACCAGCACATGCCCAAGCCTAGCATGTGCTGCCGCAACCCTCGGT
*
4490446 CCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAA
885 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAA
*
4490487 CCTGGAAAGGAACTCCGTATGCTTAAACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACAAA
1 -CTGGAAATGAACTCCGTATGCTTAAACTG-GAATGAACTCCGTATGCCTAAGTCAACCCACAAA
* *
4490552 ACGTGCGTGCGGGCGCTCAGCCGGCCTGAGGGGCGGGATGCGCAAGCCGGGGATTGATCGGGTCC
64 ACGTGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGACCGGGTCC
* *
4490617 CCTTCTGCGTGCT-TCTGATCCTGCTATCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAAT
129 CCTTCTGCGTGCTGTC-GATCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAAT
* * *
4490681 GAACTCCGGACGCATAAGCCAACCGATGAAACGAGCGGGCAGGCAGGCGGGCGAGCGGGCATTAC
193 GAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGC--G--GGCGGGCG-GCGGGCATTAC
* * * *
4490746 GTCGACCAAAGAGATAGGATGTGCAAGCCATGGATCGATAGGGTGGTTGGTGGGTTTAGGCACAT
253 GTCGACCAAAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
4490811 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
318 CTT-ATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * *
4490876 CTTCACGTGAAGTTTCATGGCAAGACGGCTGATTTTCTATTTTTCATGATTTTTGAATA-TTTTT
382 CTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGA-TTTTCAAAACTTTTT
* * *
4490940 GCGGCTT-GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGAT
446 GCAG-TTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
4491004 CCTTGTATTTTTTTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
510 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
4491069 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAA
575 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
4491134 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
640 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * *
4491199 GGGCCAAGTACCAGCACCCATCGCACATCATTTGCACACACCCCCCCGGCCCCCCGATCGCCGAA
705 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGA
* * ** *
4491264 ACCCCAA--T-GCCG-TC-GG----CC-AAG-TTCTCTGGTGATGGTGCCCCGCCGAAGAAAAAT
770 ACCCCAATGTCGCCGATCAGGTTCTCCGACGATGCTCTGACGATGGTGCCCCGACGAAGAAAAAT
* * * * *
4491318 ACGGCACCAGCACATGCCCAAG-CTCAGCATGAGCTGCCGTAACCCTCGGTCCGATCCGATCTTA
835 GCAGCACCAGCACATGCCCAAGCCT-AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
* *
4491382 GACTGGGAATGAACTTCATATGCTTAGA
899 GACTGGGAATGAACTCCGTATGCTTA-A
*
4491410 CTGGAAATGAACTCTGTATGC
1 CTGGAAATGAACTCCGTATGC
4491431 CCAAGTCAAC
Statistics
Matches: 839, Mismatches: 84, Indels: 61
0.85 0.09 0.06
Matches are distributed among these distances:
921 2 0.00
922 123 0.15
923 3 0.00
924 2 0.00
928 2 0.00
929 2 0.00
930 4 0.00
931 1 0.00
932 408 0.49
933 80 0.10
934 26 0.03
935 7 0.01
936 18 0.02
937 22 0.03
938 18 0.02
939 14 0.02
940 1 0.00
941 8 0.01
942 37 0.04
943 61 0.07
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (925 bp):
CTGGAAATGAACTCCGTATGCTTAAACTGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAAC
GTGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGACCGGGTCCCC
TTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGCGGGCATTACGTCGACCA
AAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTATATT
TCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTGCAGTTCAGG
ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
CAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGTC
GCCGATCAGGTTCTCCGACGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGC
ACATGCCCAAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
ACTCCGTATGCTTAA
Found at i:4491696 original size:185 final size:185
Alignment explanation
Indices: 4491365--4491959 Score: 784
Period size: 185 Copynumber: 3.2 Consensus size: 185
4491355 CGTAACCCTC
* * * *
4491365 GGTCCGATCCGATCTTAGACTGGGAATGAACT-TCATATGCTTAGACTGGAAATGAAC-TCTGTA
1 GGTCCGGTCCAATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGAATGAACTTC-GTA
* * * *
4491428 TGCCCAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAGTCGGCCAAAGGGGCGGGATGCGCAA
64 TGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * *
4491493 GCCAGGGATAGGCTGGGTCCCCCTTTGCGTGCTGCCGATCCTGCTGTTGCAAACCTA
129 GCCGGGGATCGACTGGGTCCCCCTTTGCGTGCTGCCGATCCTGCTGTCGCAAACCTA
* * * *
4491550 GGTCTGGTCCGATCTTAGACTGGGAATGAAATCTGTATTCTTAGACTGGGAATGAACTTCGTATG
1 GGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTCGTATG
*
4491615 CCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGT
66 CCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * *
4491680 CGGGGATCGACTGGGTCCCCCTTTGCGTGCTGTCGATCCTGCTGCCACAACCCTA
131 CGGGGATCGACTGGGTCCCCCTTTGCGTGCTGCCGATCCTGCTGTCGCAAACCTA
* *
4491735 GGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATA
1 GGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTCGTATG
* * ** * *
4491800 CCTACGTCAACCCACGAAATGAACGTGCGGGCACTCAGCCTGCCAGAGGGGCGGGATGCGCAAGC
66 CCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * ** * * *
4491865 CGGGAATC-AGTCGGGTCCCCCTATT-CCCGCTACAGATCCTGCTGTCGCAAACCTT
131 CGGGGATCGACT-GGGTCCCCCT-TTGCGTGCTGCCGATCCTGCTGTCGCAAACCTA
* *
4491920 GGTCCGGTCCAATCTTAGATTGGGAATGAACTCCGTATGC
1 GGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGC
4491960 CTAAGCCAAC
Statistics
Matches: 361, Mismatches: 45, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
184 2 0.01
185 354 0.98
186 5 0.01
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (185 bp):
GGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTCGTATG
CCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
CGGGGATCGACTGGGTCCCCCTTTGCGTGCTGCCGATCCTGCTGTCGCAAACCTA
Found at i:4491784 original size:26 final size:26
Alignment explanation
Indices: 4491748--4491798 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
4491738 CCGGTCCAAT
*
4491748 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4491774 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
4491799 ACCTACGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4493448 original size:895 final size:889
Alignment explanation
Indices: 4491719--4495482 Score: 4508
Period size: 895 Copynumber: 4.2 Consensus size: 889
4491709 CTGTCGATCC
* * ** *
4491719 TGCTGCCACAACCCTAGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGG
1 TGCTGCCGCAACCCT-CGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * * * *
4491784 GAATGAACTCCGTATACCTACGTCAACCCACGAAATGAACGTGCGGGCACTCAGCCTGCCAGAGG
65 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * *
4491849 GGCGGGATGCGCAAGCCGGGAATC-AGTCGGGTCCCCCTATTCCCGCTACAGATCCTGCTGTCGC
130 GGCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCCCT-CT-GCG-TGC-TA-CC-GC--T---
* ** * * * *
4491913 AAACCTTGGTCCGGTCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCA--ACAA
184 AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACGATGA-AA
** * *
4491976 --A-A---CAAGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
248 CGAGAGGGCGGGCGGGCGGGCGGGCACTACGTC-GCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* ***
4492035 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAGTTCTGCATGCCAATGCCATTTTTATGG
312 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGG
*
4492100 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCTTGGCAAGACGACTCGTTT
377 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTT
* * *
4492165 TCTATTTTTCAAGATTTTTGAAACTTTTTATGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAG
442 TCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAG
* ** * *
4492230 TTTTGGCCCCAAACTTAGTAGACGTTATCCTTGTACTTTTTTTGGCATGCACAAAACAATTCAGC
507 TTTTGGCCCCAAACTTGGTAGACGAGATCCTTGTACTTTTGTTGGCATGCACAAAAAAATTCAGC
4492295 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
572 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
4492360 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
637 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
4492425 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCATATCATGTGCGC
702 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * *
4492490 ACACCCCCCGGGCCTCCCGATCGTTGGAACCCCAATGCCGTCGGTCAGGTTCTTCGGCGATGCTC
767 ACACCCCCCCGGCCCCCCGATC-CTGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTC
* * *
4492555 CGACGATGGTGCCCCAGTGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATG
831 CGACGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATG
* * *
4492614 TGCTGCCGCAACCCTCAATCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGG
1 TGCTGCCGCAACCCTC-GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * *
4492679 GAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCTAGAGG
65 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * * *
4492744 CGCAGGATGCGTAAGCCAGGGATCAACT-GGGTCCCCCTCTGCTTGCTACCG-TAACCCTCGGTC
130 GGCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCCCTCTGCGTGCTACCGCTAACCCTCAGTC
* *
4492807 TGGTCCGATCTTAGACAGGGAATGAACTCCATATGCCTAAGCCAATCGATGAAACGAGAGGGCGG
195 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGATGAAACGAGAGGGCGG
* *
4492872 GCGGGCGGGCGGGCAGGC-AC-TACGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGT
259 GCGGGCGGGCGGGCA--CTACGT-CGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
** *
4492935 GGTAGGTTAGTTTTGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAAT
321 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAAT
* * * ** *
4493000 TCATACAATGGTCCCTTAAGCCCTCACGTGAAGTTTGATGGTGAGACGAGTCGTTTTCTATTTTT
386 TCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* *
4493065 CTCGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTATTTTCAGAAGGAGTTTTGGCC
451 CACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATT-TTTTCAGAAGGAGTTTTGGCC
* * *
4493130 CCAAACTTGGTAGACGAGATCCTTGTATTTTTTTTTTTGGCATGCACAAAAAAATTAAGCTAAAA
515 CCAAACTTGGTAGACGAGATCCTTGTA---CTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
*
4493195 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGGCACTTTAATGG
577 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
4493260 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
642 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
*
4493325 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCACCACCCATCGCACATCATGTGCGCACACC
707 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * **
4493390 CCCCCGGCCACCCCGATCACTGAAACCCTAATGCTGTCAGTCA-GTTCTCCGGCGATGCTCTGGT
772 CCCCCGGCC-CCCCGATC-CTGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGAC
*
4493454 GATAGTGCCCC-GACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATG
835 GATGGTGCCCCAG-CGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATG
* *
4493509 TGCTGCCAC-AGCC-C-T-C-G---G-TC-----C--GG--T---CT--G-AT-CTTAGACTGGG
1 TGCTGCCGCAACCCTCGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * * *
4493549 AATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAACCAGCCAGAGGG
66 AATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* *
4493614 GCGGGATGTGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGTGTGCTGCCGATCCAGCTGCCACA
131 GCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCCCTCTGCGTGCT----A-CC-GCT-----A
* *
4493678 ACCATCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATTAAAC
185 ACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGATGAAAC
* * *
4493743 GAGCGGGCGGACGGGCGGGCGCGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATC
249 GAGAGGGCGGGCGGGCGGGCGGGCACTACGTCG-CCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * *
4493808 GATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATGTTT-T-TGCATGCCACTGCCATTTTTATG
313 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATG--TGCCAATGCCATTTTTATG
* * *
4493871 GCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTGATGGCAAGACGACTCGTT
376 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTT
* *
4493936 TTCTATTTTTCACAATTTTTAAAACTTTTTATGGTTC-GAGATTTTTTAAAATTTTTTCAGAAGG
441 TTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCAGAAGG
* *
4494000 AGTTTTGGCCCCCAACATGGTAGAC-ATGATCCTTGTA-TTTTGGTTGGCATGCAC-AAAAAATT
505 AGTTTTGGCCCCAAACTTGGTAGACGA-GATCCTTGTACTTTT-GTTGGCATGCACAAAAAAATT
4494062 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
568 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
4494127 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGCAAATGCTCTTTAAGGGGGTGTGAGTTCT
633 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT-CAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
4494192 -GAGGGTTTGATGAAGGGCA-CGCGGGCCAATAT-AGGGCCCAAGTACCAGTACACCCATCAGCA
697 CGA-GGTTTGATG-AGGG-ATAGGGGGCCAATATAAGGG-CCAAGTACCAG--CACCCATC-GCA
* * *
4494254 CATACATGTGC-CA-ACACCCCCCGGCCCCCCCGATCGCCGGAACCTCCCCAATGCCGCCGGTCA
755 CAT-CATGTGCGCACAC-CCCCCCGG-CCCCCCGAT--CCTGAA--ACCCCAATGCCGTCGGTCA
* * *
4494317 GGTTCTCCGCCGATGCTCCGACGATGGTG-CCCAAC-AAGAAAAATGCGGCACCAGCACATTCCC
813 GGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCCC
4494380 AAGCCCCAGCATG
878 AAG-CCCAGCATG
** * * *
4494393 CACTGGCCGCAACCCTCGGTCTGGTCCGATCTTAAGACTTGGGACAAAGAACGTCCGTATGCTTA
1 TGCT-GCCGCAACCCTC-GTCCGGTCTGATCTT-AGAC-TGGG--AATGAAC-TCCGTATGCTTA
* * *
4494458 GACTGGGAAATCGAACTCCGTAATATGCCTACAGTAAACCCACG-AACAAGCGTGCGGAGCGCTC
59 GACTGGG-AAT-GAACT-C-T-GTATGCCTA-AGTCAACCCACGAAACGAGCGTGCGG-GCGCTC
* * * * *
4494522 AGCCAGGCCAGAGGGCCGGGACGGCGCAAGCCTGGGGATC-AGTCGGCTCCCCCTCTACCGTGCT
117 AGCC-GGCCAGAGGGGCGGGA-TGCGCAAGCC-GGGGATCGACTCGGGTCCCCCTCT-GCGTGCT
* *
4494586 ACCGATCCTACTCTGGCACCCTCAGTCCGGATCTGATCTTAGACTGGGAATGAACTCCGTATGCC
178 ACCG---CTA-------ACCCTCAGTCTGG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCC
* * *
4494651 TAAGCCAAC--TG--ACGA-A--ACGAGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGA
232 TAAGCCAACGATGAAACGAGAGGGCGGGCGGGCGGGCGGGCACTACGTC-GCCAGAGAGACGGGA
* *
4494709 TGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCACATTTCTATGTGCC
296 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCC
*
4494774 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGGCCCTTAAGCCTTCACATGAAGTTTCATG
361 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATG
* * *
4494839 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTTCGGTTCGGGATTTTTTAAA
426 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAA
* ** * * *
4494904 ATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGGTGTGATCCTTGAACTTATGTTGGCATG
491 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGAGATCCTTGTACTTTTGTTGGCATG
* * *
4494969 CATAAAAAAATTCCGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
556 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * *
4495034 GCATTTCAAACACTTTAATGGCGACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
621 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * *
4495099 GTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCGATATAAGAGCCAAGTACCAGCACCCAT
686 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * * ** *
4495164 CACACATCATGTGCGCACACCCCCCTCGACCCCCCTGATCGTCGGAACTCCAATGCCACCGATCA
751 CGCACATCATGTGCGCACACCCCCC-CGGCCCCCC-GATCCT-GAAACCCCAATGCCGTCGGTCA
* * * * *
4495229 GGTTCTCCGGCGATGCTCCAATGATTGTGCCCCGGCGAAGAAAAATGCCGCACCAGCACATGCCC
813 GGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCCC
*
4495294 GAGCCCAGCATG
878 AAGCCCAGCATG
* * * * *
4495306 TGCTGCCGCAACCCTTGTTCTGGTTTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGG
1 TGCTGCCGCAACCCTCG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * ** *
4495371 GAATGAACTCTGTATGCCTAAGTCAACCTACGAAATGAGCTTGCAAGCGCTCAGCCGGCCAAAGG
65 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
*
4495436 GGCGGGATGCGCAAGCCGGGGATCGA--CGAGGTCCCCCTTTGCGTGCT
130 GGCGGGATGCGCAAGCCGGGGATCGACTCG-GGTCCCCCTCTGCGTGCT
4495483 GTCGATCCTG
Statistics
Matches: 2483, Mismatches: 251, Indels: 268
0.83 0.08 0.09
Matches are distributed among these distances:
868 1 0.00
869 106 0.04
870 2 0.00
873 3 0.00
874 2 0.00
875 1 0.00
876 114 0.05
877 53 0.02
878 27 0.01
879 5 0.00
880 61 0.02
881 294 0.12
882 13 0.01
883 80 0.03
884 31 0.01
885 31 0.01
886 6 0.00
887 2 0.00
888 1 0.00
889 3 0.00
890 3 0.00
891 212 0.09
892 50 0.02
893 3 0.00
894 6 0.00
895 447 0.18
896 28 0.01
897 8 0.00
898 16 0.01
899 10 0.00
900 14 0.01
901 21 0.01
902 16 0.01
903 1 0.00
904 3 0.00
905 5 0.00
906 3 0.00
907 18 0.01
908 6 0.00
910 3 0.00
911 6 0.00
912 64 0.03
913 23 0.01
914 49 0.02
915 17 0.01
916 12 0.00
917 28 0.01
918 311 0.13
919 112 0.05
920 3 0.00
921 25 0.01
922 20 0.01
923 17 0.01
924 9 0.00
925 32 0.01
926 46 0.02
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (889 bp):
TGCTGCCGCAACCCTCGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
AATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
GCGGGATGCGCAAGCCGGGGATCGACTCGGGTCCCCCTCTGCGTGCTACCGCTAACCCTCAGTCT
GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACGATGAAACGAGAGGGCGGGC
GGGCGGGCGGGCACTACGTCGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
TTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
TTGGTAGACGAGATCCTTGTACTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC
CCCCGATCCTGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC
AGCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATG
Found at i:4495364 original size:26 final size:26
Alignment explanation
Indices: 4495335--4495387 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4495325 CTGGTTTGAT
4495335 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
*
4495361 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
4495387 C
1 C
4495388 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:4495832 original size:26 final size:26
Alignment explanation
Indices: 4495795--4495846 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
4495785 CGGTCTGATT
*
4495795 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
4495821 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
4495847 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:4495981 original size:459 final size:457
Alignment explanation
Indices: 4495084--4496007 Score: 1237
Period size: 459 Copynumber: 2.0 Consensus size: 457
4495074 AAAATCTCAA
* *
4495084 ATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCGATATAAGAGCCA
1 ATGC-CTTTAAGGGGGTATGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCA
* * *
4495149 AGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCTCGACCCCCCTGATCGTCGGAACTC
65 AGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCTCGACCCCCCTGATCGCCGAAACCC
* * *
4495214 CAATGCCACCGATCAGGTTCTCCGGCGATGCTCCAATGATTGTGCCCCGGCGAAGAAAAATGCCG
130 CAATGCCACCGATCAGGTTCTCCGGCGATGCTCCAATGATGGTGCCCCGACAAAGAAAAATGCCG
* * *
4495279 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGTTCTGGTTTGATCTTAGACTA
195 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTGGTTCTGGTCTGATCTTAGACTA
* * *
4495344 GGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCTACGAAATGA
260 GGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCTAC-AAATGA
* * * * *
4495409 GCTTGCAAGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGACGAGGTCCCCCT
324 GCGTGCAAGCCCTCAGCCGACCAAAGGGGCGGGATGCGCAAGCCGGGGATCGACCAAGTCCCCCT
* * ** * * *
4495474 TTGCGTGCTGTCGATCCTGCTGCCACTTCCCTCAATCCGGTTCGATCTTAGACTGTGAATGAACT
389 CTGCGTGCTATCGATCCTGCTGCCACAACCCTCAATCCAGTCCGATCTTAGACTGGGAATGAACT
*
4495539 CTGT
454 CTAT
* *
4495543 ATGCCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
1 ATGCCTTTAAGGGGGTATGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAA
* * *
4495608 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CTGGCCCCTCC-GATTGCCGAAACC
66 GTACCAGCACCCATCACACATCATGTGCGCACACCCCCCTC-GACCCC-CCTGATCGCCGAAACC
* * * * *
4495671 CCAATGCCACCGGTCATGTTCTTCCGGTGATGCTCCGATGATGGTGCCCCGACAAAGAAAAATGT
129 CCAATGCCACCGATCAGGTTC-TCCGGCGATGCTCCAATGATGGTGCCCCGACAAAGAAAAATGC
* * *
4495736 GGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCACAACCCTCGGTTC-GGTCTGATTTTAGA
193 CGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCT-GGTTCTGGTCTGATCTTAGA
* *
4495800 CTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTATGTCAACACATA-AA
257 CTAGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAC-C-TACAA
* * * * *
4495864 ATGAGCGTGCAGGCCCTCATCCGACCAGAGGGGCGGGATGCGCAATCCGGGGA-CAGGCCAAGTC
320 ATGAGCGTGCAAGCCCTCAGCCGACCAAAGGGGCGGGATGCGCAAGCCGGGGATC-GACCAAGTC
* * * ** * *
4495928 CCCCTCTGGGTGCTATTGATCTTGCTGCTGCAACTCTCTATCCAGTCCGATCTTAGACTGGGAAT
384 CCCCTCTGCGTGCTATCGATCCTGCTGCCACAACCCTCAATCCAGTCCGATCTTAGACTGGGAAT
*
4495993 GAGCTCTAT
449 GAACTCTAT
4496002 ATGCCT
1 ATGCCT
4496008 AAGCCAACCG
Statistics
Matches: 403, Mismatches: 55, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
457 1 0.00
458 129 0.32
459 266 0.66
460 5 0.01
461 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (457 bp):
ATGCCTTTAAGGGGGTATGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAA
GTACCAGCACCCATCACACATCATGTGCGCACACCCCCCTCGACCCCCCTGATCGCCGAAACCCC
AATGCCACCGATCAGGTTCTCCGGCGATGCTCCAATGATGGTGCCCCGACAAAGAAAAATGCCGC
ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTGGTTCTGGTCTGATCTTAGACTAG
GAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCTACAAATGAGC
GTGCAAGCCCTCAGCCGACCAAAGGGGCGGGATGCGCAAGCCGGGGATCGACCAAGTCCCCCTCT
GCGTGCTATCGATCCTGCTGCCACAACCCTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCT
AT
Found at i:4498371 original size:25 final size:25
Alignment explanation
Indices: 4498337--4498384 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
4498327 TCCGATCTTA
4498337 GACTGGGAATGAACTACGTATGCTT
1 GACTGGGAATGAACTACGTATGCTT
*
4498362 GACTGGGAATGAACTTCGTATGC
1 GACTGGGAATGAACTACGTATGC
4498385 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (25 bp):
GACTGGGAATGAACTACGTATGCTT
Found at i:4500138 original size:217 final size:219
Alignment explanation
Indices: 4499760--4500199 Score: 659
Period size: 217 Copynumber: 2.0 Consensus size: 219
4499750 AGGGGGCCTA
* *
4499760 TATAAGGGCCAACTACCAGCACCCATCGCACATCATTTGCGCACAGCCCCCTTCGGCCCCCCCAA
1 TATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGCACACAGCCCCC-TCGGCCCCCCCAA
* *
4499825 TCGCCGGAACCCCATTGTCGTCGGTCAGGTTCTCCAACGACACTCCGACGATGGTGCCCCGACGA
65 TCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAACGACACTCCGACGATGGTGCCCCGACGA
* * *
4499890 AGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCT
130 AGAAAAATGTGGCACCAACACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAGTCC
*
4499955 GATCTTAGACTGGGAATTAACTCCG
195 AATCTTAGACTGGGAATTAACTCCG
* * *
4499980 TATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCACACA-CCCCC-CGGCCCCCCCGAT
1 TATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGCACACAGCCCCCTCGGCCCCCCCAAT
* * ** * **
4500043 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAA
66 CGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAACGACACTCCGACGATGGTGCCCCGACGAA
* * * *
4500108 GAAAAATGTGTCACCAACACATGCTCGAGCCCAGCATGTGCTACTGTAACCCTCGGTCCGGTCCA
131 GAAAAATGTGGCACCAACACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAGTCCA
4500173 ATCTTAGACTGGGAATTAACTCCG
196 ATCTTAGACTGGGAATTAACTCCG
4500197 TAT
1 TAT
4500200 GTTTAGACTG
Statistics
Matches: 198, Mismatches: 22, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
217 152 0.77
219 5 0.03
220 41 0.21
ACGTcount: A:0.23, C:0.35, G:0.23, T:0.19
Consensus pattern (219 bp):
TATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGCACACAGCCCCCTCGGCCCCCCCAAT
CGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAACGACACTCCGACGATGGTGCCCCGACGAA
GAAAAATGTGGCACCAACACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAGTCCA
ATCTTAGACTGGGAATTAACTCCG
Found at i:4500205 original size:26 final size:26
Alignment explanation
Indices: 4500176--4500226 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
4500166 CGGTCCAATC
*
4500176 TTAGACTGGGAATTAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
4500202 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
4500227 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:4502418 original size:16 final size:16
Alignment explanation
Indices: 4502397--4502434 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
4502387 CCTAGCTGCA
4502397 GCCCACCAGCCTGACT
1 GCCCACCAGCCTGACT
4502413 GCCCACCAGCCTGACT
1 GCCCACCAGCCTGACT
4502429 GCCCAC
1 GCCCAC
4502435 AGGGGTTTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.18, C:0.53, G:0.18, T:0.11
Consensus pattern (16 bp):
GCCCACCAGCCTGACT
Found at i:4505854 original size:148 final size:149
Alignment explanation
Indices: 4505587--4505856 Score: 343
Period size: 148 Copynumber: 1.8 Consensus size: 149
4505577 GGGGACTCAA
* *
4505587 GTGGACTGCCTCAGCTGCAGCACACCAGCTGCCTGACTGGCCACTGGGCCTAGCAGCGTGCCTGC
1 GTGGACTGCCTCAGCTGCAGCACACCAGCT-CCTGACTGGCCACGGGGCCTAGCAGCGTGCCCGC
* * *
4505652 CTGCTAGCTCGCGCATCCTCTCGGCTCGATGGCATCCCTCCTACATTAATACCATCATGTGGTCC
65 CTGCTAGCCCGCGCATCCTCTCGGCTCGATGGCATCCCTCCTACATAAACACCATCATGTGGTCC
4505717 AGTCCCGTAAGGGTCCTTGG
130 AGTCCCGTAAGGGTCCTTGG
* * * *
4505737 GTGGACTGCC-CTAGCTGTAGCCCACCAGCT-C-GACTGGGCACAGGGGTCTAGCAGCGTGCCCG
1 GTGGACTGCCTC-AGCTGCAGCACACCAGCTCCTGACTGGCCAC-GGGGCCTAGCAGCGTGCCCG
* * * *
4505799 -CTAGCTAGCCCGTGCATCC-CTTTGGCTCGATGGTATCCCTCCTACGTAAACACCATCA
64 CCT-GCTAGCCCGCGCATCCTC-TCGGCTCGATGGCATCCCTCCTACATAAACACCATCA
4505857 CCTAATCCTT
Statistics
Matches: 103, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
147 12 0.12
148 64 0.62
149 1 0.01
150 26 0.25
ACGTcount: A:0.17, C:0.35, G:0.26, T:0.22
Consensus pattern (149 bp):
GTGGACTGCCTCAGCTGCAGCACACCAGCTCCTGACTGGCCACGGGGCCTAGCAGCGTGCCCGCC
TGCTAGCCCGCGCATCCTCTCGGCTCGATGGCATCCCTCCTACATAAACACCATCATGTGGTCCA
GTCCCGTAAGGGTCCTTGG
Found at i:4508227 original size:26 final size:26
Alignment explanation
Indices: 4508188--4508240 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4508178 TTGGTCTGAT
* *
4508188 CTTAGACAGGGAATGAACTTCGTATG
1 CTTAGACAGAGAATGAACTCCGTATG
*
4508214 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACAGAGAATGAACTCCGTATG
4508240 C
1 C
4508241 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGAGAATGAACTCCGTATG
Found at i:4509991 original size:26 final size:26
Alignment explanation
Indices: 4509955--4510006 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4509945 CCGATCCGAT
4509955 TTAGACTGGGAAAGAACTTC-GTATGC
1 TTAGACTGGGAAAGAAC-TCAGTATGC
*
4509981 TTAGACTGGGAATGAACTCAGTATGC
1 TTAGACTGGGAAAGAACTCAGTATGC
4510007 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAAAGAACTCAGTATGC
Found at i:4511282 original size:903 final size:893
Alignment explanation
Indices: 4509091--4511749 Score: 3793
Period size: 903 Copynumber: 3.0 Consensus size: 893
4509081 CTGGTCTGAT
* *
4509091 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGC
* * *
4509156 CGGCCAGAGGGGTGGGATGCGCAGGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATC-
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCT
* * * *
4509220 --CTGCCATTGCAACACTTAGTCTGGTCTGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGG
131 TGCTGCCA---CAACCCTCAGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGC
* * *
4509283 CAACCGACAAAATGAGCGGGTGGGCA---C--TAC-AC-CGGCCAGAGAGGCGGGATGCGAAAGC
193 CAACCGACAAAACGAGCGGGCGGGCAGGCCGGCACTACGCGGCCAGAGAGGCGGGATGCGAAAGC
* *
4509341 TGTGGATCGATAGGGTGGTAGGTGGGTTTACACAACTCTTCATATTTCTGTGTGCCAATGCCATT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAAACAA-TCTTCATATTTCTGTGTGCCAATGCCATT
** * *
4509406 TTTATTTCATGTAAATTCATACATTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
322 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
4509471 CTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTC
387 CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGAGA-TTTTTTAAAATTTTTTC
* *
4509536 GGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
451 -GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAA
* *
4509601 AATTCAGCAAAAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTTA
515 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
* * *
4509666 GACACTTTAATGGCTACTGGCAGCAAACCTCTAAAATCTCAAATGCACTTTAAGGGGGGTGAGTT
580 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTT
4509731 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
645 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
4509796 TGTGTGCACACCCCCCGGCCCCCC-GATCGCCGGAACCCCAATACCACCGGTCAGGTTCTCCGGT
710 TGTGCGCACACCCCCCGGCCCCCCTGATCGCCGGAACCCCAATGCCATCGGTCAGGTTCTCC-GT
* * * *
4509860 GATGCTCCGGCCATTGTGCCCCGATGAAGAAAAATGCGGCACCAACACATACCTGAGCCCAGCAT
774 GATGCTCC-GCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATACCCGAGCCCAGCAT
* * * * *
4509925 GTGCTGTCGCAACCCTCGGTCCGATCCGAT-TTAGACTGGGAAAGAACTTCGTATG
838 GTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTGGACTGGGAAAGAACTCCGTATG
* * * * *
4509980 CTTAGACTGGGAATGAACTCAGTATGCCTAAGTTAACCCACGAAATGAGCTTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGC
* * * *
4510045 CGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGG-CTGGGTCCCCCTCTACATGCTGCCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATC
* * * *
4510109 TTGCTGCCGCATCCCTCAGTCTAGTCTGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCA
130 TTGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
* ** * *
4510174 ACCGACAAAACGAGCGGGCGGGCAGGCGGGCACTACGCCAACCAGAGAGGCGGGATGTGCAAGCC
195 ACCGACAAAACGAGCGGGCGGGCAGGCCGGCACTACG-CGGCCAGAGAGGCGGGATGCGAAAGCC
* ** *
4510239 GTGGATCGATAGGGTGGTAGGTGGGTTTAAACATGTCTTCATATTTCTGCATGCCAGTGCCATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAAACA-ATCTTCATATTTCTGTGTGCCAATGCCATTT
* *
4510304 TTATGGCTTCTAAATTCATAGAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
323 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
4510369 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCAG
388 TCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC-G
*
4510434 AAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAA
452 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAA
* *
4510499 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGA
517 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
* *
4510564 CACTTTAATGCCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTC
582 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGTGTGAGTTC
* * * * *
4510629 TCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCATGTACCAGTACCCATCACACATCAT
646 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *
4510694 GTGCGCACGCCCCCCGGCCCCCCTGATCGCCGGAACCCTAATGCCATCGGTCAGGTTCTTCCGTG
711 GTGCGCACACCCCCCGGCCCCCCTGATCGCCGGAACCCCAATGCCATCGGTCAGGTTC-TCCGTG
* * * * *
4510759 ATGCTCCGACGAAGGAGCCCTGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
775 ATGCTCCG-CGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATACCCGAGCCCAGCATG
*
4510824 TGCTGCCGCAACCCTCATTCCGGTCCGATCTTGGACT-GGAAATGAACTCCGTATG
839 TGCTGCCGCAACCCTCAGTCCGGTCCGATCTTGGACTGGGAAA-GAACTCCGTATG
* * * **
4510879 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCCACCTAGGAAACGAGCGTACGGCCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGC
* * * ** * *
4510944 CGTCCAGAGGGGCGGGATGCGCAAGTCAGGGATTGGTCGATTCCCCGTCTGCGTGCTGCTGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCT
* * * *
4511009 TGCTGCCACAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
131 TGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
4511074 CCGACGAAACGAGCGGGCGGGCGGACGGGCCGGCACTACGTCGGCCAGAGAGGCGGGATGCGTAT
196 CCGACAAAACGAGCGGGCGGGC--A--GGCCGGCACTACG-CGGCCAGAGAGGCGGGATGCGAAA
* * *
4511139 GCCGTGGATCGACAGGGTGGTAGCTGGGTTTAAACACATCTTCATATTTCTATGTGCCAATGCCA
256 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAAACA-ATCTTCATATTTCTGTGTGCCAATGCCA
*
4511204 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC
320 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
4511269 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTT
385 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
* * *
4511334 CGACAAGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTCTTGGCATGCATAAAA
450 CGA-AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAA
*
4511399 AAATTCAGCTAAAAACTCGAAGTGTACAAGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
514 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
* *
4511464 AGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTGTTTAAGGGGTGTGAGT
579 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGT
* * *
4511529 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACTTC
644 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
*
4511594 ATGTGCGCACACCCCCCGGCCCCCTTGATCGCCGGAACCCCAATGTCGC-T-GGTCAGGTTCT-C
709 ATGTGCGCACACCCCCCGGCCCCCCTGATCGCCGGAACCCCAATG-C-CATCGGTCAGGTTCTCC
* * * *
4511656 ----TG----GCGATGGTGCCCCGATGAAGAAAAATACGGCACTAGCACATTCTCGAGCCCAGCA
772 GTGATGCTCCGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATACCCGAGCCCAGCA
*
4511713 TGTGCTGCCCCAACCCTCAGTCCGGTCCGATCTTGGA
837 TGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTGGA
4511750 ACCGATGAAA
Statistics
Matches: 1571, Mismatches: 172, Indels: 52
0.88 0.10 0.03
Matches are distributed among these distances:
888 1 0.00
889 184 0.12
891 81 0.05
892 6 0.00
894 2 0.00
895 2 0.00
896 188 0.12
897 276 0.18
898 118 0.08
899 205 0.13
900 2 0.00
901 2 0.00
902 124 0.08
903 379 0.24
904 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCT
TGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACAAAACGAGCGGGCGGGCAGGCCGGCACTACGCGGCCAGAGAGGCGGGATGCGAAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAAACAATCTTCATATTTCTGTGTGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAGG
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCGGCCCCCCTGATCGCCGGAACCCCAATGCCATCGGTCAGGTTCTCCGTGATGCTC
CGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATACCCGAGCCCAGCATGTGCTGCC
GCAACCCTCAGTCCGGTCCGATCTTGGACTGGGAAAGAACTCCGTATG
Found at i:4513814 original size:891 final size:886
Alignment explanation
Indices: 4511749--4516151 Score: 5050
Period size: 892 Copynumber: 5.0 Consensus size: 886
4511739 CCGATCTTGG
* **
4511749 AACCGATGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATC
1 AACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATC
* * * * * *
4511814 GATCGGGTCCCCCTCTGTGTGCTGCCGATCTTGCTACTACCACCCTCAGTTC-GGTCTGATCTTA
66 GGTCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCACAACCCTC-GATCTGGTCTGATCTTA
* *
4511878 GACTGAGAATGAACTCCGTATGCCTAAGCCAACAGACTAAACGA-GCGGGCGAGTGGGCGGGCAC
130 GACTG-GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGGC----GGGCGGGCAC
* * * * * * *
4511942 TAGGCCGGCCAGAGAGATGGGATGTGCAAGCCGTGGATCGATAAGGTGGCAGGTGGGTTTAAGTA
190 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * * *
4512007 CATATTCATATTTCTACGTGCCAATGCCATTTCTATGGCTTGTAAATTCATGCACTGGTCCCTTA
255 CATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
4512072 AGCCTTCACGTGAAGTTTCATGGCAAGAC-ACTCGTTTTCTATTTTTCATGATTTTTGAAA-TTT
320 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
**
4512135 TCTGCGGTTCGAGATTTTTTAAAATTTTTTC-GAAAGGAGTCATGGCCCCAAACTTGGTAGACGT
385 T-TGCGGTTCGAGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGT
*
4512199 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
448 GATCCTTGTATTTTTATTGGCATGCAC-AAAAAAATTCAGCTAAAAACTC-AAGTGTACAAGATT
* *
4512264 TTGTGACCACTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGT
511 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
4512329 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAAGAGGGATAGAGGGCCAAT
576 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* ** *
4512394 ATAAGGGCCAAGGACCAGCACCCATCATACATCATGTGAGCACACCCCCCGGCCCCCCCGATCGC
641 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCGG-CCCCCCGATCGC
* * * ** *
4512459 CGGAACCCTAATGCCGCCAGTTAGGTTCTC-CGA---T-GATGGTGCCCCGACGAAGAGAAATGC
704 CGGAACCCCAATGCCGCCGGTCAGGTTCTCGCGAGCCTCGATGGTGCCCCGGTGAAGAAAAATGC
* * * * * * * *
4512519 GGCACCAGCACATTCTCGAGCCCAGCATGTACTGCCGCAACCTTCAGTCCAGTCTGATCTT-GAA
769 GACACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAG-A
* * **
4512583 CTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTTTGTATGCCTAAGTC
833 CTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * * * *
4512637 AACCCACGAAAAGAGTGTGCGGGTGCTCAACCGGCCAGAGGGGCGAGATGCT-TAAACCGAGGAT
1 AACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATG-TGCAAGCCGGGGAT
* * * * ** * * *
4512701 CAGCCGGGTCCCACTCTACGTTTTGCCTATCCTACTACCATAACCCTCGAT-TCGGTCTGATCTT
65 CGGTCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCACAACCCTCGATCT-GGTCTGATCTT
* * * * * *
4512765 ACACTAGAAATGAACTCCATACGCCTAAGCCAATCGACGAAATGAGATGCCAGGCGGGCGGGCGG
129 AGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGACG--A--A-A--CGAGGCGGGCGGGCGG
* * * *
4512830 GCACTACGGCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTAA
186 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * *
4512895 GGCACATCTTCATATTTTTGCATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTCC
251 GGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
4512960 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTT-AAA
316 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * *
4513024 CTTTTTGTGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCTCCAAACTTGGTAGAC
381 CTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
4513089 ATGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAAGTCGAAGTGTACAAGAT
446 GTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTC-AAGTGTACAAGAT
* * *
4513154 TTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTATTGGCAGCAAACTTG
510 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
4513219 TAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGTTAGGGGGCCAA
575 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
4513284 TATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACCCCCCCGGCCCCCCGATCGTC
640 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCCGGCCCCCCGATCGCC
* *
4513349 GGAATCCCAATGCCG-CTGTCCAGGTTCTCTGGCGATGCTCTGACGATGGTGCCCCGGTGAAGAA
705 GGAACCCCAATGCCGCCGGT-CAGGTTCTC--GCGA-GC-CT--CGATGGTGCCCCGGTGAAGAA
* * *
4513413 AAATGCAACACCAACACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCAGTCCGGTCCGATC
763 AAATGCGACACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATC
* **
4513478 TTAAACTACGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
828 TTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * *
4513537 AACCCATGAAATGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCGGGATATGCAAGCCGGGGATC
1 AACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATC
* * * * * *
4513602 GGTCGGGTCCCCCTCAATGTGTTGCCGATCCTACTGCCACAACCCTCGGTCTGATCTGATCTTAG
66 GGTCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCACAACCCTCGATCTGGTCTGATCTTAG
*
4513667 ACTAGGAATGAACTCCGTATGCCTAAGCCGACCGACGAAACGA-GCGGGCGGGCGGGCACTACGC
131 ACT-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGGCGGGCGGGCACTACGC
** * *
4513731 CGGTGAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTA-GTGGGTCTAGGCACATCT
195 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
4513795 TCAGATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCTCTAATCC
260 TCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT-TAAGCC
** ** * **
4513859 TTCACGTGAAGTTTCATGGCAAGACGACTTATTTTCTATTTTTTTTTATTTTCAAAACTTTTTGC
324 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGC
* *
4513924 GGTTCGGGATTTTTTAAAATTTTTT-TGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
389 GGTTCGAGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * *
4513988 TTGTATTTTTGTTGGCATGCACAAAAAACTTTAGCTAAAAACTCAAAGTGTACAAGATTTTGTGA
453 TTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTC-AAGTGTACAAGATTTTGTGA
* * *
4514053 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGTAAACCTATAAAATC
517 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
4514118 TCAAATGCTCTTTAAGGGGGTGTGTGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
582 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * *
4514183 TCTAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCGGCCCCCCCGATCGCCGGAAC
647 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCGG-CCCCCCGATCGCCGGAAC
* * *
4514248 CCCAATTCCGTCGGTCAGGTTCTCG-G-G--T-GATGGTTCCCCGGTGAAGAAAAATGCGACACC
710 CCCAATGCCGCCGGTCAGGTTCTCGCGAGCCTCGATGGTGCCCCGGTGAAGAAAAATGCGACACC
* * * * * *
4514308 AACACATGCCCGAGACTAGCATGTACTACCGCAACCCTCAGTTCGGTCCGATCTTAGACTGGAAA
775 AACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAA
* *
4514373 TGAAC-TCTGTATGCTTAGACTGGGAATCAACTCCATATGCCTAAGTC
840 TGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
4514420 AACCCATGAAACGAGCGTGCGGGTGCTCAGTCAGCCAGAAGGGTGGGATGCGCAAGTCGGGG-TC
1 AACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATC
** *** * * * *
4514484 GACCGGGTCCCCCTCTGCATGCTGTCAATCCTGCTGCCACAACCCTTGATCTGGTCTGATCTTAG
66 GGTCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCACAACCCTCGATCTGGTCTGATCTTAG
* *
4514549 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGTGGGTGGGCGGGTGGGCGGGC
131 ACT-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-------GGCGGGCGGGCGGGC
* * * *
4514614 ACAACTCCGGCCAGAGAAACGAGA-GACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
188 ACTACGCCGGCCAGAGAGACGGGATG-CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
4514678 GTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
252 GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * *
4514743 TTAAGCCTTCACATGAACTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACGATTTTTGAAAC
317 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * *
4514808 TTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACG
382 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
4514873 TGATCCTTTTATTTTTATTGGCATGCACAAAAAAATTCAG---------C-----TA-AA-A---
447 TGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAGTGTACAAGATTT
* * *
4514919 ----A-C---T------A---TCCCCATTTCAAACAC-TTATTGGCTACTAGCAGCAAACCTGTA
512 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * * ** * * * *
4514966 AAATCTCAAATGCTCTTTAAGGGGGTGTGCG-TTCTCGAG-GTTTGATGA-G-GGATA-GGGGGC
577 AAATCTCAAATGCTCTTT-AAGGGG-GTGTGAGT-TCTCGAGGTT--TGATGAGG-GATAGGGGG
* * * * * * *
4515026 CAATATA-AGGGCCAAG-TGCCAGCACCCATCGCATATCATGTGCGCACACCCCCCGGGCCCCCC
636 CCA-ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCC-GGCCCCCC
** * *
4515089 GATCGTTGGAACCCCAATGCTGCCGGTCAGGTTCTC-CGGTAATG-CTCCGGCGTGGTGCCCCGG
698 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCGC-G--A-GCCT-C-G-ATGGTGCCCCGG
* * * * * * * *
4515152 GGAAGAAAAATGTGGCATCAACACATGCCCTAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGG
756 TGAAGAAAAATGCGACACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGG
* * *
4515217 TTCGATCTTAGACTGGGAATGAACTTCATAGGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
821 TCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
4515282 C
886 C
* * * * * *
4515283 AACCCAAGAAACAAGCGTACGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATC
1 AACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATC
* ** * * * * *
4515348 GGTCAGGTCCCCCTCTGCGTGCTGTCGA-CCTTGCTACCGCAACCTTCGATCTAGTCCGATCTTA
66 GGTCGGGTCCCCCTCTATGTGCTGCCGATCC-TGCTACCACAACCCTCGATCTGGTCTGATCTTA
*
4515412 GACTGAGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGGCAGG
130 GACTG-GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---GGCGGGCGGGC--G--GG
** * *
4515477 CACTACATCGGCCAGAGAGATGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
187 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
4515542 GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCC
252 GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
4515607 TTAAGCCTTCAC-----G-----T-GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
317 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * *
4515661 TTTTTACGGTTCGAGATTTCTAAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACG
382 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
4515726 TGATCCTTGTATTTTTTTTGGCATGTAGAAAAAAATTCAGCTAAAAACTC----G---AAG----
447 TGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAGTGTACAAGATTT
* *
4515780 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTATA
512 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
4515845 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
577 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * *
4515910 TAAGGGCCAAGTACCATCACCCATCGCACATCATGCGTGCACACCCCCCCGACCCCCTCGATTGC
642 TAAGGGCCAAGTACCAGCACCCATCGCACATCAT--GTGCGCACCCCCCCGGCCCCC-CGATCGC
* * * *
4515975 CAGAACCCCAATGCCGCCGGTCAGGTTCAC-C-A---ACGATGGTGCCCCGGTGAAGAAAAATAC
704 CGGAACCCCAATGCCGCCGGTCAGGTTCTCGCGAGCCTCGATGGTGCCCCGGTGAAGAAAAATGC
* * * * *
4516035 GACAGCAACACATGCCCGAGCCCAGCGTGTGCTACCGCAACCCTCGAG-CTGGTCCGATCTTAGG
769 GACACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-AGTCCGGTCCGATCTTAGA
* *
4516099 CTGGGAATGAGCTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
833 CTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
4516152 GATCCTGCTA
Statistics
Matches: 3005, Mismatches: 393, Indels: 252
0.82 0.11 0.07
Matches are distributed among these distances:
853 244 0.08
854 41 0.01
855 11 0.00
856 3 0.00
857 1 0.00
858 1 0.00
859 1 0.00
860 12 0.00
861 2 0.00
862 3 0.00
863 175 0.06
864 225 0.07
865 2 0.00
866 2 0.00
867 1 0.00
869 1 0.00
870 123 0.04
871 2 0.00
872 1 0.00
874 1 0.00
875 3 0.00
876 6 0.00
877 12 0.00
878 37 0.01
879 67 0.02
880 38 0.01
881 7 0.00
882 97 0.03
883 181 0.06
886 1 0.00
887 2 0.00
888 129 0.04
889 36 0.01
890 70 0.02
891 531 0.18
892 583 0.19
893 42 0.01
894 34 0.01
895 6 0.00
896 7 0.00
897 1 0.00
898 1 0.00
899 1 0.00
900 260 0.09
901 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (886 bp):
AACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATC
GGTCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCACAACCCTCGATCTGGTCTGATCTTAG
ACTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGGCGGGCGGGCACTACGCC
GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
CATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGG
TTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
TATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAGTGTACAAGATTTTGTGACCAT
TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCCGGCCCCCCGATCGCCGGAACCCCAAT
GCCGCCGGTCAGGTTCTCGCGAGCCTCGATGGTGCCCCGGTGAAGAAAAATGCGACACCAACACA
TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACT
TCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
Found at i:4514411 original size:26 final size:26
Alignment explanation
Indices: 4514360--4514412 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
4514350 TCGGTCCGAT
* **
4514360 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATCAACTCCATATG
*
4514386 CTTAGACTGGGAATCAACTCCATATG
1 CTTAGACTGGAAATCAACTCCATATG
4514412 C
1 C
4514413 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATCAACTCCATATG
Found at i:4515609 original size:864 final size:854
Alignment explanation
Indices: 4513176--4516151 Score: 3429
Period size: 853 Copynumber: 3.4 Consensus size: 854
4513166 TGAAAAAAGT
* * * *
4513176 GTCCCCATTCCAGACACTTTAATGGCTATTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAA
1 GTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
4513241 AGGGGTGTGAGTTCTCGAGGTTTGATGAGGGTTAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
66 AGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * *
4513306 CCATTGCACATCATGTGCGCAC-CCCCCC-GGCCCCCCGATCGTCGGAATCCCAATGCCG-CTGT
131 CCATCGCACATCATGTGCGCACACCCCCCGGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGT
* * *
4513368 CCAGGTTCTCTGGCGATGCTCTGACGATGGTGCCCCGGTGAAGAAAAATGCAACACCAACACATG
196 -CAGGTTCTC-CG-GAAG---T--CGATGGTGCCCCGGTGAAGAAAAATGCGACACCAACACATG
* ** * * **
4513433 CTCGAGCCCAGCATGTGCTGTCGCAACCCTCAGTCCGGTCCGATCTTAAACTACGAATGAACTTC
253 CCCGAGCCCAGCATGTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTTC
*
4513498 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGC
318 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGC
** *** * *
4513563 TCAGTCGGCCAGAGGGGCGGGATATGCAAGCCGGGGATCGGTCGGGTCCCCCTCAATGTGTTGCC
383 TCAGTCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGGTCGGGTCCCCCTCTGCGTGCTGTC
* * *
4513628 GATCCTACTGCCACAACCCTCGGTCTGATCTGATCTTAGACT-AGGAATGAACTCCGTATGCCTA
447 GATCCTGCTGCCACAACCTTCGATCTG-TCTGATCTTAGACTGA-GAATGAACTCCGTATGCCTA
* * ** *
4513692 AGCCGACCGACGAAACGA---GCGGGCGGGC--G-GGCACTACGCCGGTGAGAGAGACGGGATAC
510 AGCCAACCGACGAAACGAGGGGCGGGCGGGCGGGCGGCACTAC-TCGGCCAGAGAGACGGGATGC
* *
4513751 GCAAGCCGTGGATCGATAGGGTGGTA-GTGGGTCTAGGCACATCTTCAGATTTCTACGTGCCAAT
574 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
*
4513815 GCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCTCTAATCCTTCACGTGAAGTTTCATGGC
639 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT-TAAGCCTTCAC-TGAA-TTTCATGGC
** ** * **
4513879 AAGACGACTTATTTTCTATTTTTTTTTATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAAT
701 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAAT
* *
4513944 TTTTT-TGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
766 TTTTTCAGAAA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGC
*
4514008 ACAAAAAACTTTAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
830 ACAAAAAA----A--T------TC--AG-CTA-AA-A-------A-C---T-----AA
* * * *
4514066 GTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGTAAACCTATAAAATCTCAAATGCTCTTT
1 --GTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * * * *
4514131 AAGGGGGTGTGTGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCTAAGTACCAGC
64 AAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * *
4514196 ACCCATCGCACATCATGTGCGTACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATTCCGTCG
129 ACCCATCGCACATCATGTGCGCACACCCCCCGGGCCCCCCGATCGCCGGAACCCCAATGCCGCCG
*
4514261 GTCAGGTTCT-CGG--GT-GATGGTTCCCCGGTGAAGAAAAATGCGACACCAACACATGCCCGAG
194 GTCAGGTTCTCCGGAAGTCGATGGTGCCCCGGTGAAGAAAAATGCGACACCAACACATGCCCGAG
* * * *
4514322 ACTAGCATGTACTACCGCAACCCTCAGT-TCGGTCCGATCTTAGACTGGAAATGAAC-TCTGTAT
259 CCCAGCATGTGCTACCGCAACCCTCAGTCT-GGTCCGATCTTAGACTGGGAATGAACTTC-GTAT
* *
4514385 GCTTAGACTGGGAATCAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAG
322 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * * ** * *
4514450 TCAGCCAGAAGGGTGGGATGCGCAAGTCGGGGTCGACCGGGTCCCCCTCTGCATGCTGTCAATCC
387 TCGGCCAGAGGGGCGGGATGCGCAAGCCGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
*
4514515 TGCTGCCACAACCCTT-GATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
452 TGCTGCCACAA-CCTTCGATCT-GTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
4514579 ACCGACGAAATGAGTGGGTGGGCGGGTGGGCGGGCACAACTCCGGCCAGAGAAACGAGA-GACGC
515 ACCGACGAAACGAG-GGGCGGGCGGGCGGGC-GGCACTACT-CGGCCAGAGAGACGGGATG-CGC
* * *
4514643 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGC
576 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
4514708 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAACTTTCATGGCAAG
641 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC-TGAA-TTTCATGGCAAG
* * * *
4514773 ATGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTT
704 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* *
4514838 TTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTATTGGCATGCACAA
769 TTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAA
4514903 AAAAATTCAGCTAAAAACT-A
834 AAAAATTCAGCTAAAAACTAA
* *
4514923 -TCCCCATTTCAAACAC-TTATTGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
1 GTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * *
4514986 GGGGGTGTGCGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCAC
66 AGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* ** *
4515051 CCATCGCATATCATGTGCGCACACCCCCCGGGCCCCCCGATCGTTGGAACCCCAATGCTGCCGGT
131 CCATCGCACATCATGTGCGCACACCCCCCGGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGT
* * * * *
4515116 CAGGTTCTCCGGTAATGCTCCGGCGTGGTGCCCCGGGGAAGAAAAATGTGGCATCAACACATGCC
196 CAGGTTCTCCGG-AA-G-T-C-G-ATGGTGCCCCGGTGAAGAAAAATGCGACACCAACACATGCC
* * * * * *
4515181 CTAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTTCAT
255 CGAGCCCAGCATGTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGT
* * * *
4515246 AGGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACAAGCGTACGGGTGCTC
320 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTC
** *
4515311 AACCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCAGGTCCCCCTCTGCGTGCTGTCGA
385 AGTCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGA
* * *
4515376 -CCTTGCTACCGCAACCTTCGATCTAGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAG
449 TCC-TGCTGCCACAACCTTCGATCT-GTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAG
* *
4515440 CCAACCGATGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTACATCGGCCAGAGAGATGGGATGC
512 CCAACCGACGAAACGAG-GGGCGGGCGGGCGGGC-GGCACTAC-TCGGCCAGAGAGACGGGATGC
*
4515505 GCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
574 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
*
4515570 GCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCAC-G-------T-GCAAG
639 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACTGAATTTCATGGCAAG
* * * *
4515626 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTCTAAAAATTTT
704 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * *
4515691 TTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGTAGAA
769 TTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAA
4515756 AAAAATTCAGCTAAAAACTCGAAGTGTGACCATTTGAAAAAA
834 AAAAATTCAGCT---AA----AA-----A-C---T-----AA
* * *
4515798 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTATAAAATCTCAAATGCTCTTT
1 --GTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* *
4515863 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCATC
64 AAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * * *
4515928 ACCCATCGCACATCATGCGTGCACACCCCCCCGACCCCCTCGATTGCCAGAACCCCAATGCCGCC
129 ACCCATCGCACATCATGTGCGCACACCCCCCGGGCCCCC-CGATCGCCGGAACCCCAATGCCGCC
* * *
4515993 GGTCAGGTTCACC--AA--CGATGGTGCCCCGGTGAAGAAAAATACGACAGCAACACATGCCCGA
193 GGTCAGGTTCTCCGGAAGTCGATGGTGCCCCGGTGAAGAAAAATGCGACACCAACACATGCCCGA
* * * *
4516054 GCCCAGCGTGTGCTACCGCAACCCTCGAG-CTGGTCCGATCTTAGGCTGGGAATGAGCTCCGTAT
258 GCCCAGCATGTGCTACCGCAACCCTC-AGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTAT
4516118 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
322 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
4516152 GATCCTGCTA
Statistics
Matches: 1806, Mismatches: 212, Indels: 154
0.83 0.10 0.07
Matches are distributed among these distances:
853 301 0.17
854 19 0.01
856 2 0.00
857 1 0.00
858 1 0.00
859 1 0.00
860 2 0.00
862 2 0.00
863 175 0.10
864 242 0.13
865 3 0.00
866 2 0.00
867 1 0.00
869 1 0.00
870 123 0.07
871 2 0.00
872 1 0.00
874 1 0.00
875 3 0.00
876 2 0.00
877 4 0.00
878 15 0.01
879 139 0.08
880 32 0.02
882 93 0.05
883 180 0.10
885 1 0.00
886 9 0.00
887 1 0.00
888 1 0.00
889 1 0.00
890 47 0.03
891 209 0.12
892 146 0.08
893 6 0.00
894 34 0.02
895 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (854 bp):
GTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
AGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
CCATCGCACATCATGTGCGCACACCCCCCGGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGT
CAGGTTCTCCGGAAGTCGATGGTGCCCCGGTGAAGAAAAATGCGACACCAACACATGCCCGAGCC
CAGCATGTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTT
AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGTCGG
CCAGAGGGGCGGGATGCGCAAGCCGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCT
GCCACAACCTTCGATCTGTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGAC
GAAACGAGGGGCGGGCGGGCGGGCGGCACTACTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACTGAATTTCATGGCAAGACGACTCGTTTT
CTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAAGAGT
TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCT
AAAAACTAA
Found at i:4516123 original size:26 final size:26
Alignment explanation
Indices: 4516093--4516145 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4516083 CTGGTCCGAT
* *
4516093 CTTAGGCTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4516119 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4516145 C
1 C
4516146 CTAAGTGATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4516924 original size:26 final size:26
Alignment explanation
Indices: 4516888--4516940 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4516878 CCATTCTGAT
4516888 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4516914 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4516940 C
1 C
4516941 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4516929 original size:795 final size:777
Alignment explanation
Indices: 4515379--4516946 Score: 2206
Period size: 795 Copynumber: 2.0 Consensus size: 777
4515369 CTGTCGACCT
* * * *
4515379 TGCTACCGCAACCTTCGATCTAGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCACAACCCTCGATCTAGTCCAATCTTAGACTGAGAATGAACTCCCTATGCCTAAGCCAA
* * *
4515444 CCGATGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTACATCGGCCAGAGAGATGGGATGCGCAA
66 CCGATGAAACGA-CGGGCAGGCGGGCGGGCAGGCACTACATCGGCCAGAGAGACGAGATGCGCAA
* * **
4515509 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
130 GCCATAGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACACGCCAATGCCA
* *
4515574 TTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGCAAGACGACTCGTTTTC
195 TTTTTATGGCTTGTAAATTCAGACAATGCTCCCTTAAGCCTTCACGTGCAAGACGACTCATTTTC
* *
4515639 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTCTAAAAATTTTTTCAGAAAGAGTT
260 TATTTTTCACGATTTTTGAAACTTTTTACAGTTCGAGATTTCTAAAAATTTTTTCAGAAAGAGTT
* * * * *
4515704 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGTAGAAAAAAATTCAGCTA
325 TTGACCCCAAACTTGGTACACGTGATCCTTGTACTTTTATTGGCATGCAGAAAAAAATTCAGCTA
4515769 AAAACTCGAAGTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
390 AAAACTCGAAGTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
4515834 ACAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
455 ACAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
*
4515899 GGGGGCCAATATAAGGGCCAAGTACCATCACCCATCGCACATCATGCGTGCACACCCCCCCGACC
520 GGGGGCCAATATAAGGGCCAAGTACCATCACCCATCGCACATCATGCGCGCACACCCCCCCGACC
**
4515964 CCCTCGATTGCCAGAACCCCAATGCCGCCGGTCAGGTTCACCAACGATGGTGCCCCGGTGAAGAA
585 CCCTCGATTGCCAGAACCCCAATGCCGCCGGTCAGGTTCACCAACGATGGTGCCCCGACGAAGAA
* * **
4516029 AAATACGACAGCAACACATGCCCGAGCCCAGCGTGTGCTACCGCAACCCTCGAGCTGGTCCGATC
650 AAATACGACACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGAGCCAGTCCGATC
* *
4516094 TTAGGCTGGGAATGAGCTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGATCC
715 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGATCC
* * *
4516157 TGCTACCACAACCCTCGGTCT-GATCCAATCTTAGACTGGGAATGAACTCCCTTTGCCTAAGCCA
1 TGCTACCACAACCCTCGATCTAG-TCCAATCTTAGACTGAGAATGAACTCCCTATGCCTAAGCCA
* * * *
4516221 ACCGATGAAATGA-GGGCAGGTGGGCGGGCGGGCACTAC-GCTGGCCAGAGAGACGAGATGCGCA
65 ACCGATGAAACGACGGGCAGGCGGGCGGGCAGGCACTACATC-GGCCAGAGAGACGAGATGCGCA
*
4516284 AGCCGTAGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTC-AGCACGCCAATGC
129 AGCCATAGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA-CACGCCAATGC
* *
4516348 CATTTTTTTGGCTTGTAAATTCAGACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
193 CATTTTTATGGCTTGTAAATTCAGACAATGCTCCCTTAAGCCTTCAC-----G-----T-GCAAG
* * * *
4516413 ACGACTCATTTTTTATTTTTCACGATTTTTGAAACTTTTTATAGTTCGAGATTTTTTAAAATTTT
247 ACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGAGATTTCTAAAAATTTT
* * * *
4516478 TTCGGAAGGAGTTTTGACCCCAAACTTGGTACATGTGATCCTTGTACTTTTATTGGCATGCA-TA
312 TTCAGAAAGAGTTTTGACCCCAAACTTGGTACACGTGATCCTTGTACTTTTATTGGCATGCAGAA
4516542 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
377 AAAAATTCAGCTAAAAACTC-----G---AAG----TGTGACCATTTGAAAAAAGTGTCCCCATT
* *
4516607 TC-GTACAC-TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
430 TCAG-ACACTTTAATGGCTACTGGCAACAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
4516670 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTA-CTTGCACCCATCGC
494 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAT-CACCCATCGC
* * * *
4516734 ACATCATGTGCGCACA-CCCCCCTA-CCCCTCGATCT-TCGGAACCCCAATGCCGCCGGTCAGGT
558 ACATCATGCGCGCACACCCCCCCGACCCCCTCGAT-TGCCAGAACCCCAATGCCGCCGGTCAGGT
* * * *
4516796 TCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAACACATGCCCGAGCCTAGCATGTG
622 TCACCAACGATGGTGCCCCGACGAAGAAAAATACGACACCAACACATGCCCGAGCCCAGCATGTG
* * *
4516861 CTGCCGCAACCCTCG-GTCCATTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
687 CTACCGCAACCCTCGAG-CCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
4516925 AATGAACTCCGTATGCCTAAGT
751 AATGAACTCCGTATGCCTAAGT
4516947 CAACCCACGA
Statistics
Matches: 697, Mismatches: 63, Indels: 43
0.87 0.08 0.05
Matches are distributed among these distances:
775 2 0.00
776 143 0.21
777 1 0.00
778 67 0.10
781 1 0.00
786 22 0.03
787 117 0.17
791 1 0.00
794 4 0.01
795 168 0.24
796 10 0.01
797 126 0.18
798 35 0.05
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (777 bp):
TGCTACCACAACCCTCGATCTAGTCCAATCTTAGACTGAGAATGAACTCCCTATGCCTAAGCCAA
CCGATGAAACGACGGGCAGGCGGGCGGGCAGGCACTACATCGGCCAGAGAGACGAGATGCGCAAG
CCATAGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACACGCCAATGCCAT
TTTTATGGCTTGTAAATTCAGACAATGCTCCCTTAAGCCTTCACGTGCAAGACGACTCATTTTCT
ATTTTTCACGATTTTTGAAACTTTTTACAGTTCGAGATTTCTAAAAATTTTTTCAGAAAGAGTTT
TGACCCCAAACTTGGTACACGTGATCCTTGTACTTTTATTGGCATGCAGAAAAAAATTCAGCTAA
AAACTCGAAGTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAA
CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCATCACCCATCGCACATCATGCGCGCACACCCCCCCGACCC
CCTCGATTGCCAGAACCCCAATGCCGCCGGTCAGGTTCACCAACGATGGTGCCCCGACGAAGAAA
AATACGACACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGAGCCAGTCCGATCT
TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGATCC
Found at i:4517778 original size:26 final size:26
Alignment explanation
Indices: 4517742--4517791 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
4517732 CTGGTTCAAT
4517742 CTTAGACTGGGAATGAACTCCGTAGG
1 CTTAGACTGGGAATGAACTCCGTAGG
4517768 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
4517792 TGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAGG
Found at i:4517983 original size:4 final size:4
Alignment explanation
Indices: 4517974--4517999 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
4517964 GACGAAACGA
4517974 GCGG GCGG GCGG GCGG GCGG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GC
4518000 AGGCACTACG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.27, G:0.73, T:0.00
Consensus pattern (4 bp):
GCGG
Found at i:4519464 original size:26 final size:26
Alignment explanation
Indices: 4519428--4519480 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4519418 CCATTCTGAT
4519428 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4519454 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4519480 C
1 C
4519481 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4520320 original size:28 final size:27
Alignment explanation
Indices: 4520277--4520329 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 27
4520267 CTGGTTCAAT
4520277 CTTAGACTGGGAAATGAAACTCCGTAGG
1 CTTAGACTGGGAAATG-AACTCCGTAGG
4520305 CTTAGACCTGGG-AATGAACTCCGTA
1 CTTAGA-CTGGGAAATGAACTCCGTA
4520330 TGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
27 9 0.38
28 10 0.42
29 5 0.21
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (27 bp):
CTTAGACTGGGAAATGAACTCCGTAGG
Found at i:4520781 original size:839 final size:829
Alignment explanation
Indices: 4519138--4520814 Score: 2245
Period size: 839 Copynumber: 2.0 Consensus size: 829
4519128 GAAAAAAGTG
* *
4519138 TCCCCATTTCAAACACTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
1 TCCCCATTTCAAACACTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGA
* *
4519203 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGTCAATATAAGGGCCAAGTACCTGCACCC
66 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* *
4519268 ATCGCACATCATTTGCGCACACCCCCCCAGCCCCCCGATCTTCGGAACCCCAATGCCGCCGGTCA
131 ATCGCACATCATGTGCGCACACCCCCCCAGCCCCCCGATCTTCGGAACCCCAATGCCACCGGTCA
* * *
4519333 GGTTCTTCGGCGATGGTGCCCCGGCGAAGAAAAATGCGACACCAACACATGCCTGAGCCTAGCAT
196 GGTTCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGACACCAACACATGCCCGAGCCCAGCAT
* * *
4519398 GTGCTGCCGCAACCGTCGGTCCATTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
261 GTGCTGCCGCAACCCTCGGTCCATTCTAATCTTAGACTGGGAATGAACTCCGTAGGCTTAGACTG
* * *
4519463 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCTAGAG
326 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAACCGGCCAGAG
*
4519528 GGGCGGGATGCGCAAGCCAAGGATCAGCCGGGTCCCCTCTACGTGCTGTCGATCCTATTACCGCA
391 GGGCGGGATGCG--AGCCAAGGAT---CC--G-CCCCTCTACGTGCTGTCGATCCTACTACCGCA
** * * *
4519593 ACCCTCGATCCGGTCAGATCTTAGACTGGGAATGAACTCGATATGCCTAAGCCAACCGATGAAAC
448 ACCCTCGATCAAGTCAGATCTTAGACTGAGAATAAACTCGATATGCCTAAGCCAACCGACGAAAC
4519658 GAGCGGACGGGCGGGCGGGCACTACGTCAACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
513 GAGCGGACGGGCGGGCGGGCACTACGTCAACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * *
4519723 GGTTGGTAGGTGGGCTTAGCCACATCTTCATATTTCTGCATGCCAATGCCATTTTTGTGGCTTGT
578 GGGTGGTAGGTGGGCTTAGCCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGT
* * * *
4519788 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGATGACTCGTTTTTTAT
643 AAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAA--TCACGACAAGATGACTCATTTTTTAT
* * * *
4519853 TTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCGAACT
706 TTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATCTTTTCAGAAAGAGTTTTGGCCCCAAACT
*
4519918 TGGTAGACGTGATCCTTTTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTA
771 TGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTA
*
4519977 TCCCCATTTCAAACACTTATTGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGA
1 TCCCCATTTCAAACACTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGA
* *
4520042 GGGTGT-CGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCC
66 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * ** * *
4520106 ATCGCATATCATGTGCGCACACCCCTCGGGCCCCCCGATCATT-GGAACCCCAATGCTATCGGTC
131 ATCGCACATCATGTGCGCACACCCCCCCAGCCCCCCGATC-TTCGGAACCCCAATGCCACCGGTC
* * *
4520170 AGGTTCTCCGGTAATGCTCCGACGTGGT-CCCCGGTGAA-AAAAATGTGGCACCAACACACTGCC
195 AGGTTCTCC-G----G---CGA--TGGTGCCCCGGCGAAGAAAAATGCGACACCAACACA-TGCC
* **
4520233 CGAAGCCCAGCATGTGGCTGCCGTAACCCTCGGTCTGGTTC-AATCTTAGACTGGGAAATGAAAC
249 CG-AGCCCAGCATGT-GCTGCCGCAACCCTCGGTC-CATTCTAATCTTAGACTGGG-AATG-AAC
*
4520297 TCCGTAGGCTTAGACCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-GAGCGTATGG
309 TCCGTAGGCTTAGA-CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGG
* * *
4520361 GTGCTCAACCGGCCAGAGGGGCGGGATG-G-GTC-AGG-T-C-CCCCTCTGCGTGCTGTCGATCT
373 GTGCTCAACCGGCCAGAGGGGCGGGATGCGAGCCAAGGATCCGCCCCTCTACGTGCTGTCGATCC
* * * * *
4520420 TGCT-CCGCAACCTTCGGTCTAATTC-GATCTTAGACTGAGAATAAACTCCG-TATGGCTAAGCC
438 TACTACCGCAACCCTCGATC-AAGTCAGATCTTAGACTGAGAATAAACT-CGATATGCCTAAGCC
* ** *
4520482 AACCGACGAAACGAGCGGGCGGGCGGGCAGGCAGGCACTACGTCGGCCAGAGAGATGGGATGCGC
501 AACCGACGAAACGAGCGGACGGGCGGGC--G--GGCACTACGTCAACCAGAGAGACGGGATGCGC
* * *
4520547 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
562 AAGCCGTGGATCGATAGGGTGGTAGGTGGGCTTAGCCACATCTTCATATTTCTACATGCCAATGC
* * ** *
4520612 CATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGCAA-GACGACTCGTT
627 CATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAATCACGACAAGAT
** *
4520676 TTCT-ATTTTTCATGATTTTTTAAACTTTTTACGGTTTGGGATTTTTTAAAATCTTTTCAGAAAG
692 GACTCATTTTT--T-ATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATCTTTTCAGAAAG
*
4520740 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
754 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCA
4520805 GCTAAAAACT
819 GCTAAAAACT
4520815 CGAAGTGTAT
Statistics
Matches: 738, Mismatches: 73, Indels: 54
0.85 0.08 0.06
Matches are distributed among these distances:
836 75 0.10
837 33 0.04
838 117 0.16
839 189 0.26
840 139 0.19
841 1 0.00
843 1 0.00
845 1 0.00
846 24 0.03
847 16 0.02
848 15 0.02
849 30 0.04
850 8 0.01
851 50 0.07
852 39 0.05
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (829 bp):
TCCCCATTTCAAACACTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGA
GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
ATCGCACATCATGTGCGCACACCCCCCCAGCCCCCCGATCTTCGGAACCCCAATGCCACCGGTCA
GGTTCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGACACCAACACATGCCCGAGCCCAGCAT
GTGCTGCCGCAACCCTCGGTCCATTCTAATCTTAGACTGGGAATGAACTCCGTAGGCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAACCGGCCAGAG
GGGCGGGATGCGAGCCAAGGATCCGCCCCTCTACGTGCTGTCGATCCTACTACCGCAACCCTCGA
TCAAGTCAGATCTTAGACTGAGAATAAACTCGATATGCCTAAGCCAACCGACGAAACGAGCGGAC
GGGCGGGCGGGCACTACGTCAACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
GGTGGGCTTAGCCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
ACAATGCTCCCTTAAGCCTTCACGTGAAATCACGACAAGATGACTCATTTTTTATTTTTGAAACT
TTTTACGGTTTGGGATTTTTTAAAATCTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACGT
GATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTA
Found at i:4521175 original size:26 final size:26
Alignment explanation
Indices: 4521145--4521194 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
4521135 CTGGTCTGAT
* * *
4521145 CTTAGGCTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
4521171 CTTAGACTGGGAATAAACTCCGTA
1 CTTAGACTGGGAATAAACTCCGTA
4521195 AGCCTAAGTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:4522321 original size:11 final size:11
Alignment explanation
Indices: 4522305--4522337 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
4522295 CGGTCAGGTT
4522305 CTCCGACGATG
1 CTCCGACGATG
4522316 CTCCGACGATG
1 CTCCGACGATG
4522327 CTCCGACGATG
1 CTCCGACGATG
4522338 GTGCCCCGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:4523757 original size:901 final size:901
Alignment explanation
Indices: 4521552--4526051 Score: 6265
Period size: 901 Copynumber: 5.0 Consensus size: 901
4521542 TTTGACCCCA
* *
4521552 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGTGCTCAGCCGGCCAGAGGGGCGA
1 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGG
* * * * *
4521617 GATGCGCAAGCCGGGGATCGGCCGGGT-CCCTTCTACATGCTGTCGATCCTGCTACCACAACCCT
66 GATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCACAACCCT
* ** * * * * *
4521681 CTATTC-GGTCTGATCTTAGACTTGGAATGAACTCCATATGCCTAAGCCGACCGACG-AA--A-C
131 C-AGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGATGAAACGAGC
* * ***
4521741 -GA---GCGGGCGGGCGGGCACTTCGTCGAAAAGAGAGACGGGATGCGCAAGCCATGGATCGATA
195 GGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATA
* * * *
4521802 AGTTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
260 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTTGT
* * *
4521867 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTAAGGCAAGATGACTCGTTTTCTAT
325 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * * * *
4521932 TTTTCCTGATTTTTGAAACTTTTTACGATTCAGGATTTTTTAAAATTTTTTTGGAATGAATTTTG
390 TTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* *
4521997 TCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCCTGCACAAAAAAATTCAGCTAAAA
455 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
4522062 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTTAGACACTTTAATGG
520 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
*
4522127 TTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGAT
585 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGAT
* * ** * *
4522192 GAGAGATAGGGGGCTAATATAAAAGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCC
650 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC
* * *
4522257 CCCTTCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA
714 CCC--CGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT-C--
* * *
4522322 CGATGCTCCGACGATGGTGCCCCGACGAACAAAAATGCGGCACCAACACATGCCCAAGCCTAGCA
774 CG--G----G--GATGGTGCCCCGACGAAGAGAAATGCGGCACCAACACATGCCCAAGCCCAGCA
* * *
4522387 TGTGCCACCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACT-TCATATCCTTAGAC
831 TGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCT-ATA-CCTTAGAC
4522451 TGGGAATG
894 TGGGAATG
* * * * * *
4522459 AACTCCGTATGCCTAAGTCGACCCACGAAACGAGCGTGCAGGTGCTCAACCGACCAGAGGTGCTG
1 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGG
* * * * * * *
4522524 GATGCACAAGCCGGGGATCGGACGGGTCCCCCTCTGCATGCTACCAATCCTGCTGCCACAACCCT
66 GATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCACAACCCT
* ** * * *
4522589 CAGTCCGGTCTGATCTTAGACCT-GGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACAAGC
131 CAGTCTGGTCCAATCTTAGA-CTGGGAATGAACTCCGTATGCCTAAGCCAACAGATGAAACGAGC
* * * * * *
4522653 GGGCGGACGGGTGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCAATA
195 GGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATA
*
4522718 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTTCAATGCCATTTTTATGGCTTGT
260 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTTGT
* * *
4522783 AAATTCATAAAATGGTCCATCAAGCCCTT-ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
325 AAATTCATACAATGGTCCCTTAAG-CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * *
4522847 TTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTAAAAATTTTTTCGGAAGGATTTTT
389 TTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
4522912 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
454 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
*
4522977 AACTCCAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
519 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
*
4523042 GCTACTGGCAGCAAACCTGTAAAATCTCCAATGCTCTTTAAGAGGGTGTGAGTTCT-GAGGTTTG
584 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGTGTGAGTTCTCGAGGTTTG
* *
4523106 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCATTGCACATCATGTGCGCACAC
648 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* *
4523171 CCCCCGGCCCCCCCGATCATCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGGG
713 CCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGG
* *
4523236 GATGGTGCCCCGACGAAGAGAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACTGCA
778 GATGGTGCCCCGACGAAGAGAAATGCGGCACCAACACATGCCCAAGCCCAGCATGTGCTACCGCA
* *
4523301 ACCCTCGGTCCGGTCCGATCTT-GATTGGGAATGAACTCTGTACGCTTAGACTGGGAATG
843 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTATAC-CTTAGACTGGGAATG
* *
4523360 AACTCTGTATGCCTATGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGG
1 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGG
** * * * * * * *
4523425 GATGCGCAAGCCATGGATTGGTCGGGTCTCCCTCTATGTGTTGCCGATCCTACTGTCACAATCCT
66 GATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCACAACCCT
* *
4523490 CAGTCTGGTCCAATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAACAGATGAAATGAGCG
131 CAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGATGAAACGAGCG
* * *
4523555 GACGGGCGGGCGGGCGGGTACTACACCGGCCAGAGAGACGGGATGTGCAAGCCATGGATCGATAG
196 GACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAG
*
4523620 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
261 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTTGTA
4523685 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
326 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * *
4523750 TTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTCTTAAAATTTTTTCAGAAGGAGTTTTGG
391 TTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
** ** *
4523815 CCGTAAAGATGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
456 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * * *
4523880 CTCAAAGTGTACAAGATGTTGTGACCATTTGGAAAAAGTGTCCCCATTTCAGGCACTTTAATGGC
521 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* *
4523945 TACTAGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATG
586 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATG
* *
4524010 AGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGCGCACACCCC
651 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * *
4524075 CCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGACGATGCGCTGGTGAT
716 CCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGGGAT
** * **
4524139 GGTGCCCCGGTGAAGA-AAATGCGGCACCAACACATGCCCAAGCCCAGCATGTACTACCATAACC
781 GGTGCCCCGACGAAGAGAAATGCGGCACCAACACATGCCCAAGCCCAGCATGTGCTACCGCAACC
* * *
4524203 CTCGGTCTGGTCCAATCTTAGATTGGGAATGAACTTCATATA-CTTAGACTGGGAATG
846 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC-TC-TATACCTTAGACTGGGAATG
* * * * * *
4524260 AACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGTGCTCAGCTGGCCAGAAGGGCAG
1 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGG
** * * * * * **
4524325 GATGCGCAAGCCGGGGATCAACCGGGTCCCCCTCTACGTGCTACCAATCTTGCTACTGCAACCCT
66 GATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCACAACCCT
* * * * *
4524390 CAATCTGATCCAGTCTTAGACTGGGAATGAACTCCGTAAGCCTAAGCCAACCGATGAAACGAGCG
131 CAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGATGAAACGAGCG
* * * * * * *
4524455 GGCGAGCGGGCAGGAGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
196 GACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAG
* * *
4524520 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATTTCAATGCCATTTTTATGGTTTGTA
261 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTTGTA
* * * * *
4524585 AATTCATAGAATGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTTTATT
326 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * * *
4524650 TTTCATGATTGTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTACAGTAGGAGTTCTGG
391 TTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* *
4524715 CCCCAAACTTGGTAGATGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAA
456 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
4524780 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
521 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
*
4524845 TACTGGCAGCAAACCTGTAAAATCTCCAATGCTCTTTAAGAGGGTGTGAGTTCT-GAGGTTTGAT
586 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGTGTGAGTTCTCGAGGTTTGAT
4524909 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
650 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
*
4524974 CCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGGGA
715 CCCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGGGA
* *
4525039 TGGTGCCCCGACGAAGAGAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACTGCAAC
780 TGGTGCCCCGACGAAGAGAAATGCGGCACCAACACATGCCCAAGCCCAGCATGTGCTACCGCAAC
*
4525104 CCTCGGTCCGGTCCGATCTT-GACTGGGAATGAACTCTGTACGCTTAGACTGGGAATG
845 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTATAC-CTTAGACTGGGAATG
* *
4525161 AACTCTGTATGCCTATGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGG
1 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGG
** * * * * * * *
4525226 GATGCGCAAGCCATGGATTGGTCGGGTCTCCCTCTATGTGTTGCCGATCCTACTGTCACAATCCT
66 GATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCACAACCCT
* *
4525291 CAGTCTGGTCCAATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAACAGATGAAATGAGCG
131 CAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGATGAAACGAGCG
* * *
4525356 GACGGGCGGGCGGGCGGGTACTACACCGGCCAGAGAGACGGGATGTGCAAGCCATGGATCGATAG
196 GACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAG
*
4525421 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTAGTA
261 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTTGTA
* *
4525486 AATTCATACAATGGTCCCTTAAGCAC-TCACGCGAAGTTTCACGGCAAGACGACTCGTTTTCTAT
326 AATTCATACAATGGTCCCTTAAGC-CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
** * **
4525550 TTTTCATGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGTTAGGAGTTTTG
390 TTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
** * * *
4525615 GAACCAAACTTGGAAGACGTGATCCTTGTATTTTTTTTTGGCATGCATAAAAAAATTCAGCTAAA
455 GCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* *
4525680 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCATAGACTTTAATG
519 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * *
4525745 GCTACTGACAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTG
584 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG-GTGTGAGTTCTCGAGGTTTG
** * *
4525810 ATGAGGGATAGGGGGTGAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGAACAC
648 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-
* * * *
4525875 CCCCCCTGGCCCTCCTGATCTTCGGAACCCCAATGCCGCAGGTCAGGTTCTCCGACGTATGC-CC
712 CCCCCC-GGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG-ATGCTCC
*** * * * * ** *
4525939 AACGATGGGTGCCTCGACGTAAGAAAGAATGTC-GAAACAACGCACATTTCGAAGCCCAGCATGT
775 GGGGAT-GGTGCCCCGACG-AAGAGA-AATG-CGGCACCAA--CACATGCCCAAGCCCAGCATGT
** * * * * *
4526003 GCTGTCGTAACCCTCTGTCTGATCCAACTCTTAGACTGGGAATGAACTC
834 GCTACCGCAACCCTCGGTCCGGTCCGA-TCTTAGACTGGGAATGAACTC
4526052 CGTATGCCGT
Statistics
Matches: 3197, Mismatches: 355, Indels: 77
0.88 0.10 0.02
Matches are distributed among these distances:
899 63 0.02
900 750 0.23
901 1189 0.37
902 289 0.09
903 67 0.02
904 7 0.00
905 50 0.02
906 15 0.00
907 90 0.03
908 86 0.03
909 5 0.00
910 39 0.01
911 5 0.00
912 18 0.01
913 52 0.02
915 5 0.00
916 450 0.14
917 17 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGG
GATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCACAACCCT
CAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGATGAAACGAGCG
GACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAG
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
TTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
CCGGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGGGAT
GGTGCCCCGACGAAGAGAAATGCGGCACCAACACATGCCCAAGCCCAGCATGTGCTACCGCAACC
CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTATACCTTAGACTGGGAATG
Found at i:4527912 original size:26 final size:26
Alignment explanation
Indices: 4527874--4527926 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4527864 CTGGTCCAAT
*
4527874 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4527900 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4527926 C
1 C
4527927 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4528623 original size:26 final size:26
Alignment explanation
Indices: 4528572--4528624 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
4528562 CCGATCCGAT
*
4528572 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4528598 CTTAGA-TAGGGAATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
4528624 C
1 C
4528625 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4528783 original size:698 final size:701
Alignment explanation
Indices: 4527280--4529388 Score: 3449
Period size: 698 Copynumber: 3.0 Consensus size: 701
4527270 TAGGCTGGTC
** * **
4527280 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
1 GGTGGGTTTAGGCATTTCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
4527345 ACAATGGTCCCTTAAGCCTTCACCTGAAGTTTTATGGCAAGACAACTCATTTTCTATTTTTCATG
66 ACAATGGTCCCTTAAGCCTTCACCTGAAGTTTTATGGCAAGACGACTCATTTTCTATTTTTCATG
*
4527410 ATTTTTGAAATTTTTGCGGTTCAAGATTTTTTAAAATTTTTTAGGAAGGGGTTTTCACCCCAAAC
131 ATTTTTGAAATTTTTGCGGTTTAAGATTTTTTAAAATTTTTTAGGAAGGGGTTTTCACCCCAAAC
4527475 TTTGTAGAGGTGATCCGTGTATTTTTGTTGGCATTCACAAACAAATTTAGCTAAAAAATTGAAGT
196 TTTGTAGAGGTGATCCGTGTATTTTTGTTGGCATTCACAAACAAATTTAGCTAAAAAATTGAAGT
4527540 GTACAAGATTTTGTGACCATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAATGGCTGCTGGCA
261 GTACAAGATTTTGTGACCATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAATGGCTGCTGGCA
4527605 GGAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGCACGATA
326 GGAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGCACGATA
4527670 GGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCATGTGTGCACACCCCCCAGCCC
391 GGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCATGTGTGCACACCCCCCAGCCC
4527735 CCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTATGGCGATGCTCCCGCAATGGTGCCC
456 CCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTC-AT-GC-ATG----CGCAATGGTGCCC
4527800 CGTCGAAGAAAAATATGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAATCCTCGGTC
514 CGTCGAAGAAAAATATGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAATCCTCGGTC
4527865 TGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTA
579 TGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTA
*
4527930 AGTCAACCAACAAAACGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCGGGATTCCAA
644 AGTCAACCAACAAAACGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCGGGATCCCAA
4527988 GGTGGGTTTAGGCATTTCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
1 GGTGGGTTTAGGCATTTCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * *
4528053 ACAATGGTCCCTTAAGCCTTCACGTAAAGTTTTATGGGAAGACGACTCGTTTTCTATTTTTCATG
66 ACAATGGTCCCTTAAGCCTTCACCTGAAGTTTTATGGCAAGACGACTCATTTTCTATTTTTCATG
* * * * **
4528118 ATTTTTGAAACTTTTTGCGGTTTGAGATTTTTTAAAACTTTTTCGGAAGGAGTTTTGGCCCCAAA
131 ATTTTTGAAA-TTTTTGCGGTTTAAGATTTTTTAAAATTTTTTAGGAAGGGGTTTTCACCCCAAA
* * * * * * * *
4528183 CTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAG
195 CTTTGTAGAGGTGATCCGTGTATTTTTGTTGGCATTCACAAACAAATTTAGCTAAAAAATTGAAG
* * * * *
4528248 TTTACAAGATTTTGTGACCATTTGAAAAAAGTGTGCCCATTTAAGACACTTTAATGGCTACTGGC
260 TGTACAAGATTTTGTGACCATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAATGGCTGCTGGC
* * * * *
4528313 CGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTCATG-AGGGA
325 AGGAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGCA-CGA
* * *
4528377 TAGGGGGCAAATATAAGGGCCAAGTACCAGCACTCATTGCACATCATGTGCGCACACCACCCC-G
389 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCATGTGTGCACACC-CCCCAG
* * * * * *
4528441 GCCCCCAGATCGTCGGAACCCCAATGCCACCGGTCAGGTTC-T-C-TG-GCGATGGTGCCCCGAC
453 CCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCATGCATGCGCAATGGTGCCCCGTC
* ** * * * *
4528502 GAAGAAAAATACGGCACCAACACATGCTGGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGAT
518 GAAGAAAAATATGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAATCCTCGGTCTGGT
* * *
4528567 CCGATCTTAGACTGGGAATGAACTTCATATGCTTAGA-TAGGGAATGAACTCCGTATGCCTAAGT
583 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA-GGAATGAACTCCGTATGCCTAAGT
*
4528631 CAACCAACAAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATCCCAA
647 CAACCAACAAAACGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCGGGATCCCAA
4528686 GGTGGGTTTAGGCATTTCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
1 GGTGGGTTTAGGCATTTCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
4528751 ACAATGGTCCCTTAAGCCTTCACCTGAAGTTTTATGGCAAGACGACTCATTTTCTATTTTTCATG
66 ACAATGGTCCCTTAAGCCTTCACCTGAAGTTTTATGGCAAGACGACTCATTTTCTATTTTTCATG
* *
4528816 ATTTTTGAAATTTTTGCGGTTCAGGATTTTTTAAAATTTTTTAGGAAGGGGTTTTCACCCCAAAC
131 ATTTTTGAAATTTTTGCGGTTTAAGATTTTTTAAAATTTTTTAGGAAGGGGTTTTCACCCCAAAC
*
4528881 TTTGTAGAGGTGATCCGTGTATTTTTGTTGGCATTCACAAACAAATTTAGCTAAAAATTTGAAGT
196 TTTGTAGAGGTGATCCGTGTATTTTTGTTGGCATTCACAAACAAATTTAGCTAAAAAATTGAAGT
4528946 GTACAAGATTTTGTGACCATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAATGGCTGCTGGCA
261 GTACAAGATTTTGTGACCATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAATGGCTGCTGGCA
4529011 GGAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGCACGATA
326 GGAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGCACGATA
4529076 GGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCATGTGTGCACACCCCCCAGCCC
391 GGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCATGTGTGCACACCCCCCAGCCC
4529141 CCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTATGGCGATGCTCCCGCAATGGTGCCC
456 CCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTC-AT-GC-ATG----CGCAATGGTGCCC
4529206 CGTCGAAGAAAAATATGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAATCCTCGGTC
514 CGTCGAAGAAAAATATGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAATCCTCGGTC
4529271 TGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTA
579 TGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTA
* * *
4529336 AGTCAACCAACAAAACGAGCGTACGGGTGCTCAGTCGGCCATAGGGGCAGGAT
644 AGTCAACCAACAAAACGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCGGGAT
4529389 GCGCAAGACG
Statistics
Matches: 1274, Mismatches: 109, Indels: 36
0.90 0.08 0.03
Matches are distributed among these distances:
696 4 0.00
697 315 0.25
698 320 0.25
699 1 0.00
701 1 0.00
703 4 0.00
705 1 0.00
707 1 0.00
708 307 0.24
709 316 0.25
710 4 0.00
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.28
Consensus pattern (701 bp):
GGTGGGTTTAGGCATTTCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
ACAATGGTCCCTTAAGCCTTCACCTGAAGTTTTATGGCAAGACGACTCATTTTCTATTTTTCATG
ATTTTTGAAATTTTTGCGGTTTAAGATTTTTTAAAATTTTTTAGGAAGGGGTTTTCACCCCAAAC
TTTGTAGAGGTGATCCGTGTATTTTTGTTGGCATTCACAAACAAATTTAGCTAAAAAATTGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAATGGCTGCTGGCA
GGAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGCACGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACATCATGTGTGCACACCCCCCAGCCC
CCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCATGCATGCGCAATGGTGCCCCGTCGAA
GAAAAATATGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAATCCTCGGTCTGGTCCA
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAC
CAACAAAACGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCGGGATCCCAA
Found at i:4529318 original size:26 final size:26
Alignment explanation
Indices: 4529280--4529332 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4529270 CTGGTCCAAT
*
4529280 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4529306 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4529332 C
1 C
4529333 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4530170 original size:26 final size:26
Alignment explanation
Indices: 4530132--4530184 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4530122 CTGATCCGAT
4530132 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
* *
4530158 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
4530184 C
1 C
4530185 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:4530854 original size:12 final size:12
Alignment explanation
Indices: 4530837--4530867 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
4530827 GAGGGATAGG
4530837 GGGCCAATATAA
1 GGGCCAATATAA
4530849 GGGCCAATATAA
1 GGGCCAATATAA
4530861 GGGCCAA
1 GGGCCAA
4530868 GTACTACCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.39, C:0.19, G:0.29, T:0.13
Consensus pattern (12 bp):
GGGCCAATATAA
Found at i:4531080 original size:26 final size:26
Alignment explanation
Indices: 4531051--4531103 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4531041 CCAGTCCGAT
*
4531051 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
4531077 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
4531103 C
1 C
4531104 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4532860 original size:26 final size:26
Alignment explanation
Indices: 4532826--4532878 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4532816 TCGGTCCGAT
* * *
4532826 CTTAGACTGGGAATGAATTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
4532852 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
4532878 C
1 C
4532879 CTTAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:4533278 original size:891 final size:891
Alignment explanation
Indices: 4529773--4534244 Score: 5657
Period size: 891 Copynumber: 5.0 Consensus size: 891
4529763 AAGGAGTTTC
* *
4529773 GGCATACACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAA
1 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* ** *
4529838 GTGT-CCCATTTCAGACACTTTAATGGGTACTACCAGCAAACCTGTAAAATCTCAAATTCTCTAT
66 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTT
*
4529902 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGC
131 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * ** * * *
4529967 ACCCGTTGCACATCATGTGCGCACACCCCCACGATCCCCCCGATC-ATCGGAACCCCAATGTCGT
196 ACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCCGATCGCT-GAAACCCCAATGTCGC
* * *
4530031 CGGTCAGGTTCTCCG-G-TGATGGTGCCCCGACGAAGAAAAATACGGCATCAACACATGCCGGAG
259 CGGTCAGGTTCTCCGAGCTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAG
* * * * * *
4530094 CCCAGCATGTGCTGCCGCAACCGTTGG-TCTGATCCGATCTTAGACTAGGAATGAACTTCGTATG
324 CCCAGCATGTGCTGCCGTAACCCTCGGTTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
4530158 CTTAGATTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
388 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCGCGAAACGAGCGTGCGGGTGCTCAGC
* ** * * * *
4530223 C-AGCCAGAGGGAAGGGATGCGCAAGCCGGGGATCGGTCCGGTCCCCCTCTGCATGCTGTCGATC
453 CGA-CCAAAGGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * *
4530287 TTGCTGCCGCAACCCTCGATTCGGTTTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
517 TTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
4530352 ACCGACAAAATGAGCGGACGAGCTGGCGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATG
582 ACCGACGAAACGAGC-GA-GAG--GG-G-G-TGGCGGGCACTACGTCGGCCAGAGAGACGGGATG
* * * * *
4530417 CGTAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCATCATATTTCTACGTGCCAA
640 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* *
4530482 TACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGC
705 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * **
4530547 AAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTTCGATTCGAGATTTTTAAAAAT
770 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAT
* * *
4530612 ATTTTCGA-AAGGATTTTTTGCCCCAAACTTGATAGTCGTGATCCTTGTATTTTTGTT
835 ATTTTCGAGAAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
*
4530669 GGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
1 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
*
4530734 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCCCAAATTCTCTTT
66 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTT
*
4530799 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAATATAAGGG
131 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA-GT-A---
**
4530864 CCAAGTACTACCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAAAACC
191 CC-AG------CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCTGAAACC
* * ** *
4530929 CTAAT-TCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCATCGATGAAGAAAAATGC
249 CCAATGT-CGCCGGTCAGGTTCT-C--CGA-GCT-----GATGGTGCCCCGACGAAGAAAAATGC
* * *
4530993 GGCACCAACACATGCCCGAGTCCAGCATGTGCTGCCGTAACCCTCGGTCCAGTCCGATCTTAGAC
304 GGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTTCGGTCCGATCTTAGAC
* *
4531058 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCTGCGAAAC
369 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCGCGAAAC
* * * ** * * *
4531123 GAGCGTGCGGGTGCTTAGCTGACAAAAGGGGTAGGATGCGTAACCCGGGGATCGGCCGGGTCCTC
434 GAGCGTGCGGGTGCTCAGCCGACCAAAGGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCC
* * * ** * * * *
4531188 CTCTACATGCTGCCGATCCTGCTACCATAACCTTCGATCTGGTCTGGTCTTAGATTGGG-ATGAA
499 CTCTGCGTGCTGCCGATCTTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAA
*
4531252 CTCCGTATGCCTAAGCCAACCGACGAAACGAGC---------TGGCAGGCACTACGTCGGCCAGA
564 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGAGGGGGTGGCGGGCACTACGTCGGCCAGA
* * *
4531308 GAGACGGGATGCGCAAGCCATGGATCGGTACGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
629 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
*
4531373 CTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
694 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
*
4531438 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGA
759 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGA
* *
4531503 TTTTTTTAAATATTTTC-AGAAGGACTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTT
824 TTTTTTTAAATATTTTCGAGAAGGATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
4531567 GTT
889 GTT
* *
4531570 GGCGTGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
1 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* **
4531635 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCTGCAAACCTGTAAAATCTCAAACGCTCTTT
66 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTT
* * * *
4531700 AA-AGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAAC
131 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * *
4531764 ACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCACTCGATCG-TGGGAACCCCAATGCCGC
196 ACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCT-GAAACCCCAATGTCGC
* * * *
4531828 CAGTCAGGTTCTCCGACGATGCTTCGACGATTGTACCCCGGCGAAGAAAAATGCGGCACCAACAC
259 CGGTCAGGTTCT-C--CGA-GC-T----GATGGTGCCCCGACGAAGAAAAATGCGGCACCAACAC
* * * *
4531893 ATGCCCAAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAAC
315 ATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAAC
* * * * * *
4531958 TCCGTTTGCTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCAACTCGTGAAACAAGCGTGCGAG
380 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCGCGAAACGAGCGTGCGGG
* * * * * * * *
4532023 TGCTCAGCAGGCCAGAA-GGGCGGGATACGTAAACCGAGGATC-GACTAGGACCCCCTCTGCGTG
445 TGCTCAGCCGACCA-AAGGGGCGGGATGCGTAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTG
* * *
4532086 CTGCCGATCTTGC-CCTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
508 CTGCCGATCTTGCTAC-CGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* ** * * * *
4532150 GCCTAAGCCAACCGACG-AGCGAGCG-G-GCGGGCAGGCAGGCATTATGTCGGCCAGAAAGACGG
572 GCCTAAGCCAACCGACGAAACGAGCGAGAG-GGGGTGGCGGGCACTACGTCGGCCAGAGAGACGG
* * *
4532212 GATGCGCAAGCCGTGGATCGATAGGATGGTAGGTGGGTTTAGGCTCATCTTCATATTTCTGCGTG
636 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
*
4532277 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCA
701 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * ** * *
4532342 TGGCAAGATGACTCGTTTTCTATTTTTTACGATTTTCAAAACTTTTTGCGGTTCGTGATTTTTTT
766 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTT
* * * *
4532407 AAATTTTTTCGAAAAGGGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
831 AAATATTTTCGAGAAGGATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
* *
4532468 GGCATGCACAAAACAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
1 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * * *
4532533 GTGTCCCTC-TTTCATACACTTTAATGGCTACTGGCAGCAAAACTGAAAAATCTCAAATGCTCTT
66 GTGTCCC-CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTT
*
4532597 TAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAA-TACCAG
130 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * *
4532661 CACCCATCACACATCATGCGCGCACACCCCCTGGGCCCCCCGATCGCTGAAACCCCAATGTCGCC
195 CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCTGAAACCCCAATGTCGCC
* *
4532726 GGTCAGGTTCTCCG-G-TGATGGTGCCCCGACGAAGAAAAATACGACACCAACACATGCCCGAGC
260 GGTCAGGTTCTCCGAGCTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGC
* * * ** * *
4532789 CCAGCATGTACTGTCGCAACCCTCAATTCGGTCCGATCTTAGACTGGGAATGAATTCTGTATGCT
325 CCAGCATGTGCTGCCGTAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * * *
4532854 TACACTGGGAATGAACTCCGTATGCCTTAGTCAACCCACGAAATGAGCGTACGGTTGCTCAGCCG
390 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCGCGAAACGAGCGTGCGGGTGCTCAGCCG
* * ** * * *
4532919 ACCAAAGGGGCGGGACGCGCAAGCCGGGGATCGGTCGGGTCCGTCTCTGCGTGTTGTCGATCCTG
455 ACCAAAGGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCTTG
* * * * *
4532984 CTGCCGTAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACC
520 CTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
*
4533049 GACGAAACGAGCGAGAGGGTGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
585 GACGAAACGAGCGAGA-GG-GGGT-GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
*
4533114 TGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
647 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
4533179 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCAAGGCTAGACGA
712 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
4533244 CTTGTTTTCTATTTTTCAGGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
777 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAATATTTTCG
4533309 -GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
842 AGAAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
4533359 GGCATGCACAAAAAGAATT-AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
1 GGCATGCACAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* **
4533423 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCATACCTGTAAAATCTCAAATTCAGTT
65 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTT
*
4533488 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAC
130 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* *
4533553 CACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGCT-AGAACCCTAATTTC
195 CACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCCCCCCGATCGCTGA-AACCCCAATGTC
* ** * *
4533617 GCCAGTCAGGTTCTCCGATGATGCTCTGGCGATGGTGCATCGGCAAAGAAAAATGCGGCACCAAC
257 GCCGGTCAGGTTCTCC---GA-G--CT---GATGGTGCCCCGACGAAGAAAAATGCGGCACCAAC
* *
4533682 ACATGCCCGAGTCCAGCATGTGCTGTCGTAA--CTC--TT-GGT-C---C----A----G--T--
313 ACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGA
*
4533726 -CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCGCGAAACGCGCGTGCG
378 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCGCGAAACGAGCGTGCG
* * ** * * * *
4533786 GGTGCTCAGCTGACCAGAGGGGTAGGACGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTACGAG
443 GGTGCTCAGCCGACCAAAGGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTG
* * * * **
4533851 CTACCGATCTTGCTACTGGAACCTTCGATCCGGTCCAATCTTAGACT-GGAATGAACTCCGTATG
508 CTGCCGATCTTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
*
4533915 CCTAAGCCAACCGACGAAACGAGC-A-A----GT---GGGCACTACGTCGACCAGAGAGACGGGA
573 CCTAAGCCAACCGACGAAACGAGCGAGAGGGGGTGGCGGGCACTACGTCGGCCAGAGAGACGGGA
* * * *
4533971 TGCGCAAGCCGTGGATCGGTAAGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCACGCC
638 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
** *
4534036 AATGCCAAATTTATGGCTTGTAAATTCATACAATGGTCCCGTAAGCCTTCACGTGAAGTTTCATG
703 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
*
4534101 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTTAA
768 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAA
* *
4534166 ATATTTTC-AGAAGGACTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTTTTTTTGTT
833 ATATTTTCGAGAAGGATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
*
4534224 GGCGTGCACAAAAAAATTCAG
1 GGCATGCACAAAAAAATTCAG
4534245 TATGCCTAAG
Statistics
Matches: 3141, Mismatches: 357, Indels: 187
0.85 0.10 0.05
Matches are distributed among these distances:
864 4 0.00
865 56 0.02
866 218 0.07
870 2 0.00
876 1 0.00
877 1 0.00
878 40 0.01
879 138 0.04
880 2 0.00
881 1 0.00
883 1 0.00
885 2 0.00
886 256 0.08
887 10 0.00
888 31 0.01
889 288 0.09
890 42 0.01
891 425 0.14
892 35 0.01
893 6 0.00
894 43 0.01
895 2 0.00
896 68 0.02
897 368 0.12
898 198 0.06
899 55 0.02
900 54 0.02
901 166 0.05
902 227 0.07
903 5 0.00
905 57 0.02
907 1 0.00
908 35 0.01
909 30 0.01
911 2 0.00
913 1 0.00
914 1 0.00
918 35 0.01
919 232 0.07
920 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (891 bp):
GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTT
AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
ACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCTGAAACCCCAATGTCGCCG
GTCAGGTTCTCCGAGCTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCC
CAGCATGTGCTGCCGTAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCGCGAAACGAGCGTGCGGGTGCTCAGCCGA
CCAAAGGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCTTGC
TACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ACGAAACGAGCGAGAGGGGGTGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAATATTTTCGAGAA
GGATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
Found at i:4536899 original size:26 final size:26
Alignment explanation
Indices: 4536870--4536922 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4536860 CCGATCTGAT
* *
4536870 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4536896 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4536922 C
1 C
4536923 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4538948 original size:894 final size:893
Alignment explanation
Indices: 4534244--4540354 Score: 8100
Period size: 894 Copynumber: 6.8 Consensus size: 893
4534234 AAAAAATTCA
* * * * * *
4534244 GTATGCCTAAGTCAACCCATGGAATGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCGGGATGCG
1 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCCGGATGCG
* * * * *
4534309 CAAGTCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGCTGATCCTACTACTACAACCCTCAGT-C
66 CAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGC-GATCCTGCTGCCACAACCCTCAGTCC
* *
4534373 TGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGTAG
130 GGTT-TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-CGG-A-
* * *
4534438 GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATTGGGTGGTAGG
191 -CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
4534503 TGGGTTTAGGCACATCTTCATATTTATGCGTGCCGATGCCATTTTTATGGCTTGTAAATTCATAC
255 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
4534568 AATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGAT
320 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* *
4534633 TTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGTAGGAGTTTTTGCCCCAAACT
385 TTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* *
4534698 TGGTAGATGTGATGCC-TGTAATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
450 TGGTAGACGTGAT-CCTTGT-ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * * *
4534761 TGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGCCTACTAGC
513 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * *
4534826 AGCAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTTGAGGTTTGATGTGGGAT
578 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
4534890 AGGGGGCCAATATAAGGGCCAAGTACCACCACCCATCACACATCATGTGCGCACACCCCCCCAG-
643 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGC
*** ** * * * *
4534954 CCCCCCGATTACCGGAACCCCAATGCCGTGGGTTAGGATCTCCGGTGATACTCCGGCGATGGTGC
707 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * * *
4535019 CCCGACGAAGAAAAATGCGACACCAAG-ACATGCCCGAGCCAAGCATGTGCTACCGTAACCCTCG
772 CCCGA-GAAGAAAAATGCGGCACC-AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * *
4535083 ATCT-GATCTGATCTTAGACTGGGAATGAACTCTGTCTGCTTAGACTAGGAATGAACTCC
835 ATCTAG-TCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCC
* * ** **
4535142 GTATGCCGAAGTCAACCTACGAAACGAGCGTATGGGTACTCAGCCGGCCAGA--GG--GGAT---
1 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCCGGATGCG
* * * * *
4535200 C-AGCC----A-------GGTCCCCCTCTACGTGCTACTGATCCTGCTTCCACAACCCTCGGTCT
66 CAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGC-GATCCTGCTGCCACAACCCTCAGTCC
* * * * * *
4535253 GGTCTGATCTTGGA-TGGGGAATAAACTTCGTATGCCTAAGCCAACTGACGAAACAACCAGGCGG
130 GGTTTGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AACGA-GC--
* * * * *
4535317 GTGGGCAGGCGGGCACTACGCCGACCAGAGAGACGGGATCCGCAAGCTGTGGATCGATAGGGTGG
188 --GGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
*
4535382 TAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCATT-TAAATT
251 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGC-TTGTAAATT
* *
4535446 CATACAATGGTCCCTTAAGCCTTCACGTGAATTTTCATGCCAAGACGACTCGTTTTCTATTTTTC
315 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * * *
4535511 ATAATTTTTAAAACTTTTTACGGTTCGGGATGTTTTAAAATTTTTTCGAAAGGAGTTTTGGCTCC
380 ATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* * * *
4535576 AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAGATTCAGCTTAAAACTCA
445 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
*
4535641 AAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
510 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
4535706 GGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT-ACG
575 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-G
*
4535770 GGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
639 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
*** * * * * * * *
4535835 GGCCCCCCCGATTACCGGAACCCCAATGCCGTCGGTCAAGATCTTCGGTGATGCTCCGGCGACGA
704 GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGG
* * * * *
4535900 TGCCCCGATGAAGAAAAATGTGACACCAACACGTGCCCGAGCCCAGCATGTGCTACCGCAACCCT
769 TGCCCCGA-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * *
4535965 CGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTCTGCTTAGACTGGGAATGAACTCC
833 CGATCTAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCC
* * * * * **
4536026 GTATGCCTAAGTCAAGCCACGAAACGAGCATGCGGGTGCTCAGTCGGCCAAAGGGGTGGGATGCG
1 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCCGGATGCG
* ** * * * *
4536091 CAAGCCGGGGATTGGTAGGGTCCCCCTCTGCGTGCTGTCGATCTTGTTGCCACAACCGTCGGTCC
66 CAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTG-CGATCCTGCTGCCACAACCCTCAGTCC
* *
4536156 GGTTTGATCTTAGTCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGC--A--GG
130 GGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGG
* * *
4536217 CGGGCACTACGCCGGCCAGAGAGACGGGAGGCGTAAGCCGTGAATCGATAGGGTGGTAGGTGGGT
195 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
4536282 TTAGG-ACATCTAT-ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTG
260 TTAGGCACATCT-TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * *
4536345 GTCCCTTAAGCTTTCACGTTAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACGATTTTT
324 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* *
4536410 GAAACTTTTTACGGCTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
389 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
*
4536475 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACA
454 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
4536540 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAA
519 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * * **
4536605 CCTGTAAAATCTCAAATGCTTTTTAAGAGGGTGTGAGTTCTTGAGGTTTGATGAAGGATAGGCAG
584 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
4536670 CCAATATAAGGGCCGAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCGGCCCCCCC
649 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGGCCCCCCC
* * * * * *
4536735 GATCGTCGGAACCCCAATGCCGCCGGTCAGATTCTCTGGTGATGCTCCAGTGATGGTGCCTCGAT
713 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA-
* * * *
4536800 GAAGAAAAATACGGCACCAGCACATGCCCGA-CCCTAGCATGTGCTGCTGCAACCCTCGGTC-CG
777 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC-AGCATGTGCTGCCGCAACCCTCGATCTAG
* *
4536863 ATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCC
841 -TCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCC
* * * * *
4536917 GTATGCCTAAGTTAACCCACGAAATGAGCTTGCGGGCACTCAGCCGGCCAGTGGGG-CGCGATGC
1 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCCG-GATGC
* * * * * * *
4536981 GCAAGCTGGGGATCAGCCGGGTCCCACTCTGCGTGCTGCCAAACCTGCTGCCATAACCCTCGGTC
65 GCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTG-CGATCCTGCTGCCACAACCCTCAGTC
* *** * * * * *
4537046 CGATCCAATCTTAGACTTGGAGTGAACTCCGTATGCCTAAGCCAAACAACGAAATGAGCAGGCGG
129 CGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-C--G-AG
*
4537111 ACGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGG
187 -CGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * *
4537176 TAGGTTGGTTTAGTCACATCTTCATATTTATGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
251 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
*
4537241 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCA
316 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* *
4537306 TGATTTTTGAAACATTTTACGGTTC-AGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCC
381 TGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* *
4537370 AAACTTGGTAGACGCGATCCCTGTATTTTAT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTC
445 AAACTTGGTAGACGTGATCCTTGTATTTT-TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
4537434 GAAGTGTACAAGATTTTGTGACCATTTGAATAAAGTGTCCCCATTTAAGACACTTTAATGGCTAC
509 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
4537499 TGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAG
574 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
*
4537564 GGATA-GGGGCCAATATAAGGGCCCAGTACCAGCACCCATCGCACATCATGTGCGCACACGCCCC
639 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCC
* * * *
4537628 CGGCCCCCCCGATCATCGAAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGGT---GC-A--
703 CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATG
* * * *
4537687 ----CCAGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGCCGCAACCCT
768 GTGCCCCGAGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * * *
4537748 CGATCTGGTTCAATCTTAGACTGGGAATGAACTTTGTAAGCTTAGACTGGGAATGAACTCC
833 CGATCTAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCC
* * * **
4537809 GTATGCCTAAGTCAACTCACAAAAC-AGGCGTGCGAGCGCTCAGCCGATCAGAGGGGCCGGATGC
1 GTATGCCTAAGTCAACCCACGAAACGA-GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCCGGATGC
** * * *
4537873 GCAAGCTAGGGATCGGTCGGGTCCCCCTCTGCGTGCTAGCGATCCTGCTGCCACAACCTTCAATC
65 GCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCT-GCGATCCTGCTGCCACAACCCTCAGTC
* * * *
4537938 CGGTTCGATCTTATACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAATGAGCGGACGG
129 CGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGG
*
4538003 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGG
194 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
4538068 TTTAGGCGCATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTG
259 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * *
4538133 GTCCCTTAAGCTTTCACGTTAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACGATTTTT
324 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* *
4538198 GAAACTTTTTACGGCTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
389 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* *
4538263 AGACGTGATCCTTGTATTTTT-TTGGCCTGCACAAAAAAATTCAGCTTAAAACTCGAAGTGTACA
454 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
4538327 AGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGTAAA
519 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
4538392 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
584 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
4538457 CCAATATAAGGGCCCAGTACCAGCACCCATCGCACATCATGTACGCACACACCCCCGGCCCCCCC
649 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGGCCCCCCC
* *
4538522 GATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC-AT
713 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA-
*
4538586 GGAAG-AAAATGCGGCACCAGTACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTAG
777 -GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTAG
* * * *
4538650 TCCGATATTAGACTGGGAATGAACTCCGTAAGCTTAGAGTGGGAATGAACTCC
841 TCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCC
* * *
4538703 GTATGCCTAAGTCAACCCACGAAACGGGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCCGGATGTG
1 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCCGGATGCG
* * ** * *
4538768 TAAGCCAGGGATCGGCCAAGTCCCCCTCTGCATGCTAGCGATCCTGCTACCACAACCCTCAGTCC
66 CAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCT-GCGATCCTGCTGCCACAACCCTCAGTCC
* *
4538833 GGTTTGATCTTATACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGATGGG
130 GGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGG
** *
4538898 CGGGCACTACGCTAGCCAGAGAGACGGGATGCGCAGGCCGTGGATCGATAGGGTGGTAGGTGGGT
195 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
** ** *
4538963 TTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTACAGCTTGTAAATTCATACAATTG
260 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
4539028 TTCCTTAAGCCTTCACGTGAAGTTTCA-GGACAAGACGACTCGTTTTCTATTTTTCATGATTTTC
325 TCCCTTAAGCCTTCACGTGAAGTTTCATGG-CAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * *
4539092 GAAACATTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGAG-CCCAAACTTGG
389 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG-GCCCCAAACTTGG
* *
4539156 TAGACGTGATCCTTGTATTTTTGTTGGCACGCA-AAAAAAATTCAGCTAGAAACTCGAAGTGTAC
453 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
4539220 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACGCTTTAATGGCTACTGGTAGCAA
518 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
4539285 ACCTGCAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
583 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * *
4539350 GCCAATATAAGGGCCAACTTCCAGCACACATCGCACATCATGTGCACACACCTCCCTCGG-CCCC
648 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCC-CGGCCCCC
* * * * * * *
4539414 CCGATCGTCGGAACCTCAATGCCGTCGGTCAAGTTCTCTGACGAAGCTCAGGCGATGCG-GCCCC
711 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATG-GTGCCCC
* * * * * * *
4539478 GACGAAGAAAAATGTGGCACCAGCACGTGCCTGAGCCCAGCATGTGCTGCCGTAACCCACGGTCC
775 GA-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCT
* *
4539543 AGTCCGATCTTAGATTGAGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCC
839 AGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCC
* * **
4539598 GTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAAAGGGGTGGGATGCG
1 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCCGGATGCG
*** * * *** *** * * *
4539663 CAAGCCGGGGATCGATTGGGTCACTCTCTATATGCTGCCGATCCCATTGCCGCAACCCACAGTCT
66 CAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTG-CGATCCTGCTGCCACAACCCTCAGTCC
* ** **
4539728 GGTCTGATCTTAGACTAAGAATGAACTCTATATGCCTAAGCCAACCGACGAAATGAGCGGGCAAG
130 GGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-----C--G
* * * * *
4539793 CAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGTCGTGGATCAATAGGG
185 -A-GCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * * *
4539858 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTTCCATTGCCATTTTTGTGGCTTGTAAA
248 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
*
4539923 TTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
313 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* *
4539988 TCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTATTCGGAA-GAGATTTTGGC
378 TCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG-TTTTGGC
4540052 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
442 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
4540117 TCGAAGTGTACAAGA-TTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCT
507 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
4540181 ACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATG
572 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * *
4540246 AGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCATATGCGTACACCCC
637 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
* *
4540311 CCCGGCCCCCCCGATCGCCGGAACCCCAATGCCG-CTGTCAGGTT
701 CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
4540355 ATGGTGCCCT
Statistics
Matches: 4619, Mismatches: 484, Indels: 212
0.87 0.09 0.04
Matches are distributed among these distances:
878 1 0.00
879 78 0.02
880 2 0.00
881 1 0.00
882 12 0.00
883 545 0.12
884 677 0.15
885 3 0.00
886 6 0.00
887 1 0.00
888 5 0.00
889 3 0.00
890 401 0.09
891 382 0.08
892 252 0.05
893 11 0.00
894 797 0.17
895 263 0.06
896 5 0.00
897 1 0.00
898 45 0.01
899 4 0.00
900 4 0.00
901 2 0.00
903 252 0.05
904 356 0.08
905 2 0.00
906 16 0.00
907 454 0.10
908 38 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCCGGATGCG
CAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCGATCCTGCTGCCACAACCCTCAGTCCG
GTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGC
GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGAGAAG
AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTAGTCCGA
TCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCC
Found at i:4539590 original size:26 final size:26
Alignment explanation
Indices: 4539551--4539603 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4539541 CCAGTCCGAT
* *
4539551 CTTAGATTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
4539577 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
4539603 C
1 C
4539604 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:4541011 original size:25 final size:26
Alignment explanation
Indices: 4540961--4541012 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
4540951 CCAGTCCGAT
*
4540961 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4540987 CTTAGACT-GGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
4541012 C
1 C
4541013 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4541523 original size:26 final size:27
Alignment explanation
Indices: 4541483--4541537 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 27
4541473 GTCTGATCCT
*
4541483 AGACTAGGAACGAACTCCGTATG-CTA
1 AGACTAGGAACGAACTCAGTATGCCTA
* *
4541509 AGACTGGGAATGAACTCAGTATGCCTA
1 AGACTAGGAACGAACTCAGTATGCCTA
4541536 AG
1 AG
4541538 TCAACCCACG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
AGACTAGGAACGAACTCAGTATGCCTA
Found at i:4543860 original size:25 final size:26
Alignment explanation
Indices: 4543810--4543861 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
4543800 ACAGTCTGAT
*
4543810 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4543836 CTTAGACT-GGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
4543861 C
1 C
4543862 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4546128 original size:26 final size:26
Alignment explanation
Indices: 4546099--4546151 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4546089 CCAATCTGAT
4546099 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
* * *
4546125 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
4546151 C
1 C
4546152 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:4547026 original size:26 final size:26
Alignment explanation
Indices: 4546990--4547040 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
4546980 CTGGTCCAAT
*
4546990 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
4547016 CTTAGACTGGGAATGAACACCGTAT
1 CTTAGACTGGGAATGAACACCGTAT
4547041 CCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:4549716 original size:26 final size:26
Alignment explanation
Indices: 4549687--4549739 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4549677 CCGGGCCGAT
4549687 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
4549713 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
4549739 C
1 C
4549740 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:4550268 original size:897 final size:899
Alignment explanation
Indices: 4544330--4551584 Score: 9331
Period size: 898 Copynumber: 8.1 Consensus size: 899
4544320 CTGGTTCAAT
* * * * * *
4544330 CTTAGACTAGGAATAAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * *
4544395 CGGGCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATTGGGTCGCCCTCTGCGTGCTGCCGATCT
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * * * * *
4544460 TACTGTCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATTAACTCCGTATGCCTAAGCCAA
131 TACTACCGAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
4544525 CCGACGAAAAGAGTAGGCGGGCGGGCAGACGAGCACTACACCGGCCAGAGAGATGGGATGCGCAA
196 CCGACGAAACGA--A--CGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
4544590 GCCGTGGATCGATACGGTAGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
4544655 TTTTTATGGTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGAC
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * ** * * *
4544720 GACTCGCTTTCTATTTTTCATTATTTTTGAAACTTTTTTTGCTTCAGAATTTTTTAAAATTTTTT
387 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *
4544785 CGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGCCATGCACAAAA
452 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
4544850 AAGTTCAGCTAAGAACTCAAAGTGTACAAGATTTTGTGACCATTTTAAAAAAGTGTCCCCATTTC
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
4544915 AGACACCTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
4544980 TTCTCGAGGTTTGATGAGGGATGGGGGGCCAATATAAGGGCCAGGTACCAGCACCCATCGCACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
4545045 CATGTGCGCAGACCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGCCGACGGTCAGGTTCTCCG
712 CATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
** ** * * * ** *
4545110 GTGATGCTATGACGATAGTGCCCCGACAAAGAAAAATACGGCACCAGGACATGCCCGAGCCTAGC
777 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGC
* * * * * *
4545175 TTGTGCTGCCACAACCCTCGGTCCGGTCTGATCCTGGACTGGGAATGAAATCCGTATG
842 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
4545233 CTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAACCCATGAAACGGGCATGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * ** * * * *
4545298 CGACTAGAAGGGTGGGATGCGCAAGCCGGGGATCGACCGGGTCCCACTCTACGTGCTACCGATCC
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
4545363 TGCTGCC-ACAACCCTCAGTCC-GACCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCC
131 TACTACCGA-AACCCTCGGTCCGGTCC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
4545426 AACCGACAAAAAGAACGGGCGGGCGGGCAGGCGGGCACTACGCCGGCCATAGAGATGGGATGCAC
194 AACCGACGAAACGAA----CGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
*
4545491 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAAGCCAATGC
255 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
4545556 CATTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
320 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * *
4545621 ACAACTCGTTTTCTATTTTTCTTAATTTTTGAAACTTTTTACGGTTCGGGATTTCTTAAAATGTT
385 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* ** *
4545686 TTCAGAAGGAGTTTTTGCTTCAAACTTGGTAGACGTTATCCTTGTATTTTTGTTGGCATGCACAA
450 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * * *
4545751 AAAAATTCAGCTAAAACCTCGATGTGTACAAGCTTTTTGTGTCCATTTGAAAAACGTGTCCCCAT
515 AAAAATTCAGCTAAAAACTCGAAGTGTACAAG-ATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * *
4545816 TTCAGACACTTTAATGGCTACTTGCAGCAAACCTATAAAATCTCAAATGCTCTTAAAGTGGGTGT
579 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
4545881 GAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
644 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * * *
4545946 CATCAAGTGCGCACACCCCCCAGCCCCCCCGATTG-CCGAACCTCAATGCCACCGGTCAGGTTCT
709 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * *
4546010 ---TCGA---T-----GATGTTGCCCCGACGAAGAAAAATGCGGCACCACCATATGCCCGAGCCC
774 CCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCC
* * * * ** * * *
4546064 AGTATTTGCTGCCACAACCCTCGATCCAATCTGATCTTAGACTGGAAATGAACTCCATATG
839 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
4546125 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* ** * * *
4546190 CGGCCAGACGGGG-GGGATGCATAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTTCTGGCGATC
66 CGGCCAGA-GGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATC
* * ** * ** * *
4546254 CTACTGCCGCAACTGTTGGTCCACTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAAGCCA
130 CTACTACCGAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** *
4546319 ACCGACGAAACG-A---GCAGGCGGGCGGGCACTACATCGACCAGAGAGACGGGATGCGCAAGCC
195 ACCGACGAAACGAACGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
4546380 GTGGATCGATAGGGTGGTA----GGTTTAGGCACATCTTCTTATTTTTACGTGCCAATGCCATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
4546441 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* **
4546506 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTAAAAATTTTTTTGG
390 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG
* ** * * *
4546571 AAGGATTTTTGGCCCCAAACTTGGTAGACACGATCCTTGTATTTTTGTTGGCAGGCAGAAAACAA
455 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
4546636 TTCAGCTAAAAATTCGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTCTCCCCATTTCAGA
520 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
4546701 CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCACATGCTCTTTAAGGGGGTGTGAGTTC
585 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
4546766 TCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
650 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
4546831 GTGCGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCTGGACAGGTTCTTCGACG
715 GTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
* * * * * ** * *
4546896 ATGCTCCGACAATGGTGCCCTGGCGATGAAAAATACGGCATGAACACAAGCCCGAGCCTAGCATG
780 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATG
* * * *
4546961 TGCTACGGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
845 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
4547016 CTTAGACTGGGAATGAACACCGTATCCCTAAGTCAACCAACGAAACGAGTGTGTGCGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * ** * * * *
4547081 TGGCCAAAAGGGCAGGATGCGCAAGCCAGGGATCGGCCGGGTACTCCTCTGTGTGCTGCCGATCT
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * ** *
4547146 TACTATCGCAACCCTTGGTTCGGTCCGATCTTAGACTGGGAATGAACGCTATATGTCTAAGCCAA
131 TACTACCGAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * * * **
4547211 CCGACGAAATGAGTGGGCGGGCGGGC-GCCACTATGCCGACCAGAGAGACGGGACACGCAAGCCG
196 CCGACGAAACGAACGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
4547275 TGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCGATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
*
4547340 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGCAAGACGACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * ** * **
4547405 CGTTTTCTATTTTTAATGATTTTTGAAACTTTTTGCGGTTTC-AAATTTTTTAGAATTTTTTTTG
391 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG-TTCGGGATTTTTTAAAATTTTTTCAG
* * *
4547469 AAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAA
455 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
4547534 TTCAGCTAAGAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTGTCAG
520 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT-TCAG
* *
4547599 ACACTTTAATGGCTACTTGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGGTGAAC
584 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT-GTG-A-
* * * *
4547664 GTTCCTCTAGGTTTGATGAGGGACTATGGGGCCAATATAAGGGCCAAAGT-GCAGCACCCATCAC
646 GTT-CTCGAGGTTTGATGAGGGA-TAGGGGGCCAATATAAGGGCC-AAGTACCAGCACCCATCGC
* **
4547728 ACATCCATGTGCGCAC-CCCCCCGGCCCCCCCGAT-GTCGACAACCCCAATGCCCGCCAATTCAG
708 ACAT-CATGTGCGCACACCCCCCGGCCCCCCCGATCGTCG-GAACCCCAATG-CCGCC-GGTCAG
* * * * * *
4547791 GTTCTCCGGCCGATGC-CCCGCGATGGTGCCCCGGACGAACAAAAATGCGGCCCCACCACATGCC
769 GTTCTCC-GACGATGCTCCGGCGATGGTGCCCC-GACGAAGAAAAATACGGCACCAACACATG-C
* * * *
4547855 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATGTTAGACTGGGAATGAACCCCC
831 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA-CTCC
*
4547920 ATATG
895 GTATG
* * * *
4547925 CCTTAGATTAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * *
4547990 CCGACCAGAGGGGCAGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATC
65 CCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATC
* *
4548055 CTGCTACC-ACAACCCTCTGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
130 CTACTACCGA-AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
4548119 AACCGACGAAACGAGCGTACGGGCGGGCGGGCGGGCACTACGCCGGCGAGAGAGACGAGATGCGC
194 AACCGACGAAACGA----ACGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * ** *
4548184 AAGCCGTAGATCGATAGGGTGGTAGGTGGGTATAGGCACATCTTCATATTTTTGTGTTCCAATGC
255 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
4548249 AATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGGAGTTTCATGGCAAG
320 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
4548314 ACGACTCATTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTT
385 ACGACTC-GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* * *
4548379 TTTTAGAAGGAGTTTTGGCCCCTAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTACA
449 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
4548444 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-----T--CC-TTTGAAAAAAGTGTCCCCAT
514 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
4548501 TTCAGACACTTTAATGGCTACTGGCAGC-AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
579 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
4548565 GAGTTCTCGAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGCA--CATTCGC
644 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA-TCGC
*
4548628 ACATCATGTGCGCACACCCCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCGCCGGTCAGGT
708 ACATCATGTGCGCACA--CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * * *
4548693 TCTCCG-CGATCCTCCGGCGATGGTGCCCCAACGAGAGATAAATGCGCGCACCAACACATGCCCG
771 TCTCCGACGATGCTCCGGCGATGGTGCCCCGACGA-AGAAAAATACG-GCACCAACACATGCCCG
* * * * *
4548757 AGCCCAGCATGTG-T-CCGAAACCCTTGGT-CGGTCCTATC-TA-ACTGGGAAT-TACCCCGTAT
834 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
4548816 G
899 G
* *
4548817 CTTAGACT-GGAGATGAAC-CCGTATGCCT-AGTCAACCCAATGAAACGAGCGTACGGGTGCTCA
1 CTTAGACTGGGA-ATGAACTCCGTATGCCTAAGTCAACCC-ACGAAACGAGCGTGCGGGTGCTCA
* ** * *
4548879 ACCGGCCAGAGGGGC-GTGATGCGCAAGCTAGGGATCAACCGGGTCCCCCT-T-CGTGCTTG-CG
64 GCCGGCCAGAGGGGCAG-GATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGC-TGCCG
* * * *
4548940 ATCCTGA-TGCC-AAAGCCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCATA
127 ATCCT-ACTACCGAAA-CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* ** ** *
4549003 AGCCAACCGACGAAATGAGGGGGCGGGTGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGC
190 AGCCAACCGACGAAACGAACGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * **
4549068 AAGCCATGGTTCGATAGGGTGGTAGGTGGGTTTAGGCACCTCTTCATATTTCTGTGTGCCAATGC
255 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * * *
4549133 TATTTTTATGGCTTGTAAATTCATACAATCGTCCCCTAAGCATTCACGTGAAGTTTCATGGCAAG
320 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
*
4549198 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGACTTTTTAAAATTTT
385 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* *
4549263 TTCAGAAGGCA-TTTTTGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACA
450 TTCAGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
4549327 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
514 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
4549392 TTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
579 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
4549457 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCATTATAAGGGCCAAGTACCAGCACCCATCGCA
644 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
4549522 CATCATGTGCGCACACCCCCCGGCCCCCCCGATTGCCGGAACCCCAATGCCGCTGGTCAGGTTTT
709 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * *
4549587 TCGATGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAACACATGCCTGAGCCC
774 CCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCC
* * *
4549652 AGCATGTGCTGCTGCAACCCTCGGTCCGGGCCGATCTTACACTGGGAATGAACTCCGTATG
839 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * **
4549713 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAACGTACGGGTGCTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * *
4549778 CGGCCAGAGGGGCAGGATGTGCAAGCAGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCC-ATCC
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *
4549842 TACTACCGAAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TACTACCGAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
4549907 CCGATGAAACGAACGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCG
196 CCGACGAAACGAACGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * *
4549972 TGGACCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCTATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * *
4550037 TATGGCTTGTAAATTCATACAATGGTCCCCTAAGCATTCACGTGAAGTTTCATGGCAAGATGACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * *
4550102 CGTTTTCTATTTTTAATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTTAAATTTTTTCGGA
391 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGA
* * *
4550167 TGGAGTTTTGTCCCCAAACTTGGTAGAGGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAAT
456 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
** * *
4550231 TCAGCTAAAAACTATAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAAAC
521 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
4550296 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGGTCTTTAAGGGGGTGTGAGTTCT
586 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
** * *
4550361 TAAGGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATCGCACATCATG
651 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * * * *
4550426 TGCGCATACCCCTCGG-CCCCCTGATAGCCGGAATCCCAATGCCGCCAGTTAGGTTCTCCGACGA
716 TGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
* *
4550490 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCTCGAGCCCAGCATGT
781 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGT
* * *
4550555 GCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATG
846 GCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
4550609 CTTAGACTGGGAATCAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * *
4550674 CGACCAGAGGGGCGGGATGCACAAGCCGGGGATCGA-CTGGGTTCCCCTCTGCGTGCTACC-AGT
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGCCGA-T
* * * * *
4550737 CCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGCACTCCGTATGCCTAAGCC
129 CCTACTACCGAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
4550802 AACTGACGAAACAAACGGGTGGGCAGGCGGGCGGGCACTACGCC-GCC-GAAGAGACGGGATGCG
194 AACCGACGAAACGAACGGGCGGGCA----GGCGGGCACTACGCCGGCCAG-AGAGACGGGATGCG
* *
4550865 CAAGCCGTGGATCGGTAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTGCATGCCAATG
254 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* *
4550930 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTATCATGGCAC
319 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* *
4550995 GACGACTCCTTTTTTATTTTTCATGATTTTTGAAACTTTTT----TT---G--------------
384 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
** *
4551039 -----GAAGGAGTTTTGG-CCTTAACTTGGTAGACGTGATCCTTGTATTTTTGTAGGCATGCACA
449 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
4551098 AAACAATTCAG-TGAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCA
514 AAAAAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
4551162 TTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTG
578 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
4551227 TGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTATCAGCACCCATTGC
643 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* ** * * *
4551292 ACATCATGTGCACACACCGCTTTCGG-CCCCCCGATCGTCGGAACCCTAATGGCACCGGTCAGGT
708 ACATCATGTGCGCACACC-C-CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
** * * *
4551356 TCTCCGGTGATGCTCCGGCAATGGTGCCCCGAAGAAGAAAAATGCGGCA-CAACACATGCCCGAG
771 TCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAG
** * *
4551420 CCCAGCATGTGCTGCCGCAACCCTCGGTCCATTCTGATCTTTGACTGGGAATGAACTCCGTATG
836 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
4551484 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCC-TGAAAAGAACATGCGGGTGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA-CCCACGAAACGAGCGTGCGGGTGCTCAG
* * *
4551548 TCGGCCAGAAGGGC-GAGATGCACAAGCCGGGGATCGA
65 CCGGCCAGAGGGGCAG-GATGCGCAAGCCGGGGATCGA
4551585 CTGAGTCCCT
Statistics
Matches: 5581, Mismatches: 660, Indels: 250
0.86 0.10 0.04
Matches are distributed among these distances:
873 31 0.01
874 217 0.04
875 161 0.03
876 79 0.01
879 182 0.03
880 260 0.05
883 148 0.03
884 226 0.04
886 1 0.00
887 2 0.00
888 79 0.01
889 11 0.00
890 111 0.02
891 367 0.07
892 390 0.07
893 35 0.01
894 63 0.01
895 21 0.00
896 288 0.05
897 387 0.07
898 625 0.11
899 127 0.02
900 211 0.04
901 47 0.01
902 51 0.01
903 525 0.09
904 245 0.04
905 22 0.00
906 54 0.01
907 53 0.01
908 74 0.01
909 9 0.00
910 173 0.03
911 1 0.00
914 12 0.00
915 155 0.03
916 138 0.02
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (899 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
TACTACCGAAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAACGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGT
GCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:4550619 original size:26 final size:26
Alignment explanation
Indices: 4550583--4550635 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4550573 CCGATCCGAT
*
4550583 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
*
4550609 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
4550635 C
1 C
4550636 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:4553116 original size:26 final size:26
Alignment explanation
Indices: 4553087--4553139 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4553077 CCAGTCCGAT
4553087 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4553113 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4553139 C
1 C
4553140 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4553844 original size:884 final size:885
Alignment explanation
Indices: 4551724--4555781 Score: 5259
Period size: 890 Copynumber: 4.6 Consensus size: 885
4551714 ACGAAAAGAA
* * * *
4551724 TCGTTTTCTATTTTTCACGATTTTTGAGACTTTTTACGGTTTGGGATTTTTCAAAATTTTTTCAG
1 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
* * ** * *
4551789 CAGGATTTTTGGTGCCAAACTTGGTAGACATAATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
66 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * ** *
4551854 TTCACCTAAAAACTC-AGAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCTTATTTCAT
131 TTCAGCTAAAAACTCGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
* *
4551918 ACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTT
195 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
** * *
4551983 CTAAAGGTTTGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCA
260 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
4552048 TGTGCGCACACCCCCCGACCCCTCCGATCG-CTGGAACGCTAATGCCGTCGGTCAGGTTCTCC-A
325 TGTGCGCACACCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGC
* * * *
4552111 G-TGATGGTGTCCCGACGAAGAAAAATGCGGCACCAACACATGCCTGAGCCCAGTATGTGCTGCC
389 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCC-GAGCCCAGCATGTGCTGCT
* * * *
4552175 GCAACCCTCGGTCTGGTCCGACCTTAGACAGGGAATGAACTCCGTATGCTTACATTGGGAATGAA
453 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAA
* * * * * * *
4552240 CTCTATATGGCTAAGTCAACCCATGAAACAAGCGTGCGGGTGCTCAGCCAGCAAAAAGGGTGGGA
518 CTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGAGGGA
* * * *
4552305 TGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGATCCTGCTGCCATATCCCTTC
583 TGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCACAACCC-TC
* * *
4552370 -GTCTGGTCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCAACAAAACGAGCAG
647 AGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-C--C--GACGA--A-
* * *
4552434 ACGAGCGGGCGGGCGGGCACTATGTTGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
704 ACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
4552499 GTGGTAGGTGGGTTTAGGCACATCTTC-TGATTTCTGCGTGCCAATACCATTTTTATGGCTTGCA
769 GTGGTAGGTGGGTTTAGGCACATCTTCAT-ATTTCTGCATGCCAATGCCATTTTTATGGCTTGCA
* *
4552563 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGGC-ATC
833 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA-C
* * *
4552616 CCGTTTTCTATTTTTCACGA-TTTTCAAACCTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
1 TCGTTTTCTATTTTTCACGATTTTTGAAA-CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* *
4552680 GAAGGAGTTTT-GTCCCAAA-TTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
65 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
4552743 AATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
130 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
* *
4552808 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAGGCTCTTTAAAGGGGTGTGAGTT
195 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
4552873 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACCAGCACCCATTGCACATCA
260 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* ** *
4552938 TGTGCGCACACCCCCCGGCCCCCCCAATCACCGGAACCTCAATGCCGTCGGTCAGGTTCTCCG-G
325 TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGCG
* * *
4553002 -CGATGGTGCCCCGATGAAGAAAAATGTGGCACCAACACATGATCGAGCCCAGCATGTGCTGCTG
390 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATG-CCGAGCCCAGCATGTGCTGCTG
* *
4553066 CAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAAC
454 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAAC
* * ** * * *
4553131 TCCGTATGCCTAAGTCAACCAACGAGATGAA-CGTGCAGGTGCTCTA-CCGGCCAGA-GGTACGG
519 TCCATATGCCTAAGTCAACCCACGA-AACAAGCGTGCGGGTGCTC-AGCCAGCCAGAGGGGA-GG
** * * * ***
4553193 GATGCGCAAGCCGGGGATCGGCCGGGTCCCCCACTGCCTACTGTTGATCCTGCTACCACAACCCT
581 GATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCACAACCCT
** * *
4553258 CAGTCCATTCTGGTCTTAGACTGGGAACGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
646 CAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
*
4553323 GGCGGGCGGGCACTACGTCGCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
711 GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
*
4553388 GTGGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCCATTTTTATGGCTTGCAAATTCATA
776 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGCAAATTCATA
* *
4553453 CAATGGTACCTTAAGGCTTCACGTGAAGTTTCATGGCAAGACGAC
841 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
4553498 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTGTTTAAAATTTTTTTGG
1 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
*
4553563 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCACGCACAAAAAAA
66 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
4553628 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
131 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAA
4553693 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
196 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
4553758 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTAGCCA-CACCCATCGCACATCA
261 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CCAGCACCCATCGCACATCA
* *
4553822 TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGCCGTCGATCAGGTTCTCCGAC
325 TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG-C
* *
4553887 GATGCTCCGGTGATGGTGTCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCAT
389 GA-----C---GATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATG-CCGAGCCCAGCAT
* * *
4553952 GTGCTGCTGCAACCCTCAGTAC-G---G----T---CT--G-AT--A-T---TAGGC--A-A---
445 GTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTG
* ** * ** **
4553991 GGAATGAACTCCGTATGCCTAAGTTGACCCATGAAATGAGCGTGCGGGTGCTCAGCTGGCCAGAG
510 GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCAGCCAGAG
* * * *
4554056 GGGCGGGATG-GCAAGCCGGGGATCGATCGGGTCCCCCTTTGCGTGCTGCCGATCCTGCTACCCC
575 GGGAGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCAC
** * **
4554120 AACCCTTGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
640 AACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * *
4554185 CAAGCGGGCGGGTGGGTGGGCACTACGTCGGCCAGAGAGACGGGTTGCGCAAGCCGTGGATCGAT
705 CGAGCGGGC----GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* *
4554250 AGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTG
766 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
* *
4554315 TAAATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGAC
831 CAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
**
4554370 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGG
1 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
* * * * * * *
4554435 AAGGAGTTTTGGCCCCAAACATGGTGGACATAATCCTTTTATTTTTGTTGGCAAGCATAAAAAAA
66 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
4554500 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAAA
131 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAA
* *
4554564 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTATGCGGGTGTGAGTTC
196 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
4554629 TCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
261 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * *
4554694 GTGCGCACACCCCCCGGCCACCCCAATCATCGAAACCCCAATGTCGCCGGTCAGGTTCTCCGACG
326 GTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--C-
* *
4554759 ATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAACACATGCCTGAGCCCAGCATG
387 --G---CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCC-GAGCCCAGCATG
* * * *
4554824 TGCTG-TCGTAACCCTCGGTCCGGTCAGATCTTAGACAGGGAATGAACTCCGTATGCTTAGACTG
446 TGCTGCT-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTG
4554888 GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCAGCCAGAG
510 GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCAGCCAGAG
* * * * *
4554953 GGGAGGGATGCGCAAGCTGGGGATCGGTCAGGTGCCCCTCTGCGTGCTACCAATCCTGC-AGCCA
575 GGGAGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTA-CCA
* * * *
4555017 CAACCCTCAGTCCGGTTTGATCTTAGACTGGAAATGAACTCTGTATGCCTAAACCAACCGACGAA
639 CAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* ** *
4555082 ATGAGCAGGCGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATATGCAAGCCATGGA
704 A--CG-A-GCGGGCGGGC----GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* **
4555147 TCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCATGCCAATGTGATTTTTATG
761 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* *
4555212 GCTTGTAAATTCATACAATGGT-CCTTAAGACTTCACGTGAAGTTTCATGGCAAGACGAC
826 GCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * *
4555271 TCCTTTTCTATTTTTCACAATTTTT-AAACTTTCTGTA--GTTTGGGATTTTTTTAAATTTTTTT
1 TCGTTTTCTATTTTTCACGATTTTTGAAACTTT-T-TACGGTTCGGGATTTTTTAAAATTTTTTC
* * * *
4555333 GAAAGGTGTGTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATACACAAAAA
64 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
4555398 AATTCAGCTAAAAACTCGAAGTGCACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCA
129 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
4555463 AACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGT
194 AACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
4555528 TCTTGAGGTTTGATGAGGGATAGGAGGG-CAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
259 TCTCGAGGTTTGATGAGGGATAGG-GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
4555592 CATGTGTGCACACCCATCCGGCCCCCTCGATTGTTGGAACCCCAATGCCG-CTGGTCAAGTTCTC
323 CATGTGCGCACACCC-CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTC
* * * * * *
4555656 CGACGAAACTCCGGTGATGGTGCCCCGACAAAGAGAAATGCAGAACCAGCACATGCTCGAGCCCT
386 CG-CG--A---C---GATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGC-CGAGCCCA
** **
4555721 GCATGTGCTGCCACAACCCTCGGTATGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
441 GCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
4555782 CTAAGCCACC
Statistics
Matches: 2781, Mismatches: 289, Indels: 182
0.86 0.09 0.06
Matches are distributed among these distances:
868 112 0.04
869 56 0.02
870 8 0.00
871 246 0.09
872 336 0.12
873 1 0.00
874 2 0.00
875 5 0.00
877 1 0.00
878 1 0.00
879 5 0.00
881 2 0.00
882 231 0.08
883 17 0.01
884 284 0.10
885 9 0.00
886 1 0.00
887 3 0.00
888 1 0.00
889 5 0.00
890 524 0.19
891 25 0.01
892 60 0.02
893 1 0.00
894 4 0.00
895 67 0.02
896 2 0.00
897 67 0.02
898 103 0.04
899 2 0.00
900 136 0.05
901 205 0.07
902 258 0.09
903 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (885 bp):
TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGCGA
CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCGAGCCCAGCATGTGCTGCTGCA
ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTC
CATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGAGGGATGC
GCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCACAACCCTCAGTC
CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGCAAATTCATACAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
Found at i:4554882 original size:26 final size:26
Alignment explanation
Indices: 4554853--4554905 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4554843 CCGGTCAGAT
*
4554853 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCATATG
*
4554879 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
4554905 C
1 C
4554906 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:4557382 original size:26 final size:26
Alignment explanation
Indices: 4557353--4557405 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4557343 CCGATCCGAT
*
4557353 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4557379 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4557405 C
1 C
4557406 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4557576 original size:894 final size:893
Alignment explanation
Indices: 4555730--4559336 Score: 4596
Period size: 894 Copynumber: 4.1 Consensus size: 893
4555720 TGCATGTGCT
* * *
4555730 GCCACAACCCTCGGTATGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCACCCGA
1 GCCACAACCCTCAGTCTGGT-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * *
4555795 TGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCA-GCCTGAGAGACGGGATGCGCAAGCCGTGG
65 TGAAACGA----ACGGGCGGGCAGGCACTACG-CAGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
4555859 ATCGATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTGCTGCGTGCCAATGCCATTTTTAT
125 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
*
4555924 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAATACGACTCGT
190 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
4555989 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGCAGG
255 TTTCTATTTTTCAAGATTCTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
* * *
4556054 AGTTTTGGCCGC--ACTTGGTAGATGTGATCCTTGTAG-TTTTGTTGGCATGCACAAAAAAATTC
320 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAGTTTTTTTTGGCATGCACAAAAAAATTC
*
4556116 AGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACAC
385 AGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
4556181 TTTAATGGCTACTGGCAGCAGACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
450 TTTAATGGCTACTGGCAGCA-ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * *
4556246 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCCCAAATCATGTG
514 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTG
* * * *
4556311 CGCACA--------CCTCCCCGATC-GCCGGTACCCCAATGCCGTCGGTCAGGTTCTCCGACGAT
579 CGCACACCCCCCGGCCCCCCCGATCAG-CGGAACCCCAATGCCATCGGTCAGGTTCTCCGACGAA
* * *
4556367 GCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACTAGCACATGCCCGGGCCCAGCATGTG
643 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * *
4556432 CTGCCCCAACCCCCGGTCCGATCCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGA
708 CTACCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * * *
4556497 ATGAACTCCATATTCCTAAGTCAACCCATGAAACGAGCGTGCGGGGGCTCAGCCGACCAGAGGTG
773 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCAAAGGGG
* * * ** *
4556562 CGGGATGCACAAGCCGAGGATC-GACTGGGTCCCCCTCTGCATGCTATCGATCCTACTA
838 CGGGATACGCAAGCCGAGGATCGGTC-GGGTCCCCCTCTGC-TGCTGCCGATCCTGC-A
* * *
4556620 -CCACAACCCTCAGTTCT-GTCTGATCTTAAACTGGCAGTGAACTCCGTATGCCTAAGCCAACCG
1 GCCACAACCCTCAG-TCTGGTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
*
4556683 ATGAAACGAACGGGCGGGCAGGCACTACGCAGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCG
64 ATGAAACGAACGGGCGGGCAGGCACTACGCAGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
** * * *
4556748 ATAGGGTGGTAGGCAGGTTTAGGCACATCTTCTTTTTTCTACGTGCCAATG-CTTTTTTATGGCT
129 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
* * * *
4556812 TGTAAATTCATGCAATGGTCCCTTAAGCCTTCATGAGAAGTTTCATGGCAAGACGACTCATTTTC
194 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * *
4556877 TATTTTTCACA-ATTTTTGAAACTTTTTACGGTTTGGGATGTTTTAAAATTTTTTCGGAAGGAGT
259 TATTTTTCA-AGATTCTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGT
* ** *
4556941 TATGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTCATTGGCATACACAAAAAAATTCAGC
323 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAGTTTTTTTTGGCATGCACAAAAAAATTCAGC
* *
4557005 TAAAAAGTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
388 TAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
4557070 AATGGCTACTGGCAGCACACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
453 AATGGCTACTGGCAGCA-ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
4557135 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGC
517 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGC
* * * * **
4557200 ACACCCCCCGGCCCCCCCGATCATCGGAACCCCAAAGCCACCGGTCAGGTTCCCCGGTGAAGCTC
582 ACACCCCCCGGCCCCCCCGATCAGCGGAACCCCAATGCCATCGGTCAGGTTCTCCGACGAAGCTC
** * *
4557265 CGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
647 CGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
* *
4557330 CACAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGA
712 CACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * **
4557395 ACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCTGGCCAAAGGGGTTGG
777 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCAAAGGGGCGGG
* * * * *
4557460 ATGCGCATGCTGGGGATCGGTCGGGTCCCCCTCTGCTTGGTGCCGATCCTGCA
842 ATACGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGC-TGCTGCCGATCCTGCA
* * * *
4557513 GCCACAACCGTCAGTTTGGTCGAATCTTAGATTGGGAAGGAACTCCGTATGCCTAAGCCAACCGA
1 GCCACAACCCTCAGTCTGGTCG-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * ** ** * * * * * *
4557578 CGAAAAGAGTGGGCGGGTGGGCATTTCACGGGCCAGAGAGGCGGGATGCACAAGCCGTGGATCGA
65 TGAAACGAACGGGCGGGCAGGCACTACGCAGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* *
4557643 TAGGGTGGTAGGTGGGTTTAGGCACATCTCCATATTTCTATGTGCCAATGCCATTTTTATGGCTT
130 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTT
4557708 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
195 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
*
4557773 ATTTTTCAAGATTCTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
260 ATTTTTCAAGATTCTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* *
4557838 TGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCATAAAAAAATTCAG-TT
325 TGGCCCCAAACTTGGTAGACGTGATCCTTGTAGTTTTTTTTGGCATGCACAAAAAAATTCAGCTA
* * * * *
4557901 AAAACTTGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAATGTCTCCATTTCGGACACTTTAA
390 AAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
4557966 TAGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
455 TGGCTACTGGCAGC-AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
4558031 TGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAACACCCATCGCACATCATGTGTGCAC
519 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCAC
* * * *
4558096 ACCCCCCTTGCCCCCCCGATCGGCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGCGATGCTCC
584 ACCCCCC-GGCCCCCCCGATCAGCGGAACCCCAATGCCATCGGTCAGGTTCTCCGACGAAGCTCC
* * *
4558161 GACGATGGTGCCCCAACGAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGAATGTGCTACC
648 GACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACC
** *
4558226 GTAA-CC-C--T-CG----G---TT---C---G---G---TCC-AAT-CTTAGACTGGGAATGAA
713 ACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * * * * * *
4558265 CTCTGTATGCCTAAGTTAGCCCACGAAATGAGCATGCGGGTGCTCAGTCGACTAGAGGGGCAGGA
778 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCAAAGGGGCGGGA
* *
4558330 TACGCAAGCC-AGGGATCGATCGGGT--CCC-CT--T-CTG-CG-TGCT--A
843 TACGCAAGCCGA-GGATCGGTCGGGTCCCCCTCTGCTGCTGCCGATCCTGCA
** * * * *
4558371 -CCGTAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCTC-TATGCCTAAGCCAACCG
1 GCCACAACCCTCAGTCTGGT-CGATCTTAGACTGGGAATGAACTC-CGTATGCCTAAGCCAACCG
* * * * * *
4558434 ATG--A--AACGTGCGGGCAGGCACTACGCCGGCCGGAGAGACAGGATGCGTAAGCCATGGATCG
64 ATGAAACGAACGGGCGGGCAGGCACTACGCAGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
*
4558495 ATAGGGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
129 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
* *
4558560 TGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTT
194 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
*
4558625 TATTTTTCAAGATTCTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTT
259 TATTTTTCAAGATTCTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTT
* * *
4558690 TT-GCCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCATGCACAACAACATTCAGC
324 TTGGCCCC-AAACTTGGTAGACGTGATCCTTGTAGTTTTTTTTGGCATGCACAAAAAAATTCAGC
* * *
4558754 TAAAAACTGGAAGTGTACAAGATTTTGTGACTATTTTGGAAAAAGTGTCCCCATTTCAGACACTT
388 TAAAAACTAGAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
4558819 TAATGGCTATTGGCATTG-AACCTGTAAAATCTCAAAGGCTCTTTAAGGGGGTGTGAGTTCTCGA
452 TAATGGCTACTGGCA--GCAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * * *
4558883 GGTTTGATTAGGGATAGGGGGCTAATATATGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
515 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGC
*
4558948 GCACACCCCCTCGGCCCCCCCGATCAGCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATA
580 GCACACCCCC-CGGCCCCCCCGATCAGCGGAACCCCAATGCCATCGGTCAGGTTCTCCGACGA-A
** * * ** * * * *
4559013 -CTTTGGCGATGGTGCCTCGGTGAATAAAAATGTGACACCAGCACATGCCTGAGCCCGGCATGTG
643 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * *
4559077 CTATCACAACCCTCGATCCGATCCGCTCTTAGATTGGGAATGAACTCCGTATGCTTAGATTGGGA
708 CTACCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * * * *
4559142 ATGAACTCCGTATGCCTAAGTCAACCAATGAAACAATCGTGTGGGTGCTCAACCGGCCAAAGGGG
773 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCAAAGGGG
* * * * * **
4559207 TGGGATATGCAAGCCGAGGATCAGCCGGGTCCCCCTCTGCGTGCTGCCGGTCCTGTT
838 CGGGATACGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGC-TGCTGCCGATCCTGCA
** * * * *
4559264 GCTGCAACCCTCAGTCCAGTGT-GATCTTAGACTGGGAATGAACTCCGTATGCCTACGTCAACCC
1 GCCACAACCCTCAGT-CTG-GTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
4559328 ATGAAACGA
64 ATGAAACGA
4559337 GGGTGCTAGC
Statistics
Matches: 2354, Mismatches: 282, Indels: 154
0.84 0.10 0.06
Matches are distributed among these distances:
852 5 0.00
853 259 0.11
854 26 0.01
855 31 0.01
856 257 0.11
857 54 0.02
858 5 0.00
860 4 0.00
861 4 0.00
862 2 0.00
863 1 0.00
865 1 0.00
866 2 0.00
867 3 0.00
868 2 0.00
869 88 0.04
870 2 0.00
871 3 0.00
874 2 0.00
877 2 0.00
880 4 0.00
881 2 0.00
882 83 0.04
883 3 0.00
884 143 0.06
885 95 0.04
886 239 0.10
888 2 0.00
889 64 0.03
890 6 0.00
891 4 0.00
893 5 0.00
894 646 0.27
895 302 0.13
896 2 0.00
898 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
GCCACAACCCTCAGTCTGGTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT
GAAACGAACGGGCGGGCAGGCACTACGCAGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCAAGATTCTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
GGCCCCAAACTTGGTAGACGTGATCCTTGTAGTTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
AAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACAC
CCCCCGGCCCCCCCGATCAGCGGAACCCCAATGCCATCGGTCAGGTTCTCCGACGAAGCTCCGAC
GATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACA
ACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCAAAGGGGCGGGATAC
GCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCTGCTGCCGATCCTGCA
Found at i:4558486 original size:147 final size:147
Alignment explanation
Indices: 4558218--4558501 Score: 327
Period size: 147 Copynumber: 1.9 Consensus size: 147
4558208 AGCCCAGAAT
* * * **
4558218 GTGCTACCGTAACCCTCGGTTCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTTA
1 GTGCTACCGTAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCTCTATGCCTAAGCCA
* * * * ** * * * *
4558283 GCCCACGAAATGAGCATGCGGGTGCTCAGTCGACTAGAGGGGCAGGATACGCAAGCCAGGGATCG
66 ACCCACGAAACGAGCAGGCAGGCACTCAGCCGACCAGAGAGACAGGATACGCAAGCCAGGGATCG
*
4558348 ATCGGGTCCCCTTCTGC
131 ATAGGGTCCCCTTCTGC
4558365 GTGCTACCGTAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCTCTATGCCTAAGCCA
1 GTGCTACCGTAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCTCTATGCCTAAGCCA
* * * * * * * * *
4558430 ACCGATGAAACGTGCGGGCAGGCACT-ACGCCGGCCGGAGAGACAGGATGCGTAAGCCATGGATC
66 ACCCACGAAACGAGCAGGCAGGCACTCA-GCCGACCAGAGAGACAGGATACGCAAGCCAGGGATC
4558494 GATAGGGT
130 GATAGGGT
4558502 GGTAGGTGGG
Statistics
Matches: 111, Mismatches: 25, Indels: 2
0.80 0.18 0.01
Matches are distributed among these distances:
146 1 0.01
147 110 0.99
ACGTcount: A:0.24, C:0.27, G:0.29, T:0.20
Consensus pattern (147 bp):
GTGCTACCGTAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCTCTATGCCTAAGCCA
ACCCACGAAACGAGCAGGCAGGCACTCAGCCGACCAGAGAGACAGGATACGCAAGCCAGGGATCG
ATAGGGTCCCCTTCTGC
Found at i:4559133 original size:26 final size:26
Alignment explanation
Indices: 4559104--4559156 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4559094 CCGATCCGCT
4559104 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
4559130 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
4559156 C
1 C
4559157 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:4559420 original size:159 final size:159
Alignment explanation
Indices: 4559130--4559498 Score: 429
Period size: 159 Copynumber: 2.3 Consensus size: 159
4559120 ACTCCGTATG
* * * * *
4559130 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACAATCGTGTGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTGTGAGCGCTCAAC
* *
4559195 CGGCCAAAGGGGTGGGATATGCAAGCCGAGGATCAGCCGGGTCCCCCTCTGCGTGCTGCCGGTCC
66 CGGCCAAAGGGGTGGGATATGCAAGCCGAGGATCAGCCAGGTCCCCCTCTGCGTGCTGCCGATCC
* * ***
4559260 TGTTGCTGCAACCCTCAGTCCAGTGTGAT
131 TGCTGCCGCAACCCTCAGTCCAGTCCAAT
* * *
4559289 CTTAGACTGGGAATGAACTCCGTATGCCTACGTCAACCCATGAAACGAGGGTGCT-AGCGCTCAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTG-TGAGCGCTCAA
* * * * *
4559353 CCGGCCAGAA-GGGTGGGATGTGCGAGTCGGGGATC-GACCAGGTCCCCCTCTGCGTGCTGTCGA
65 CCGGCCA-AAGGGGTGGGATATGCAAGCCGAGGATCAG-CCAGGTCCCCCTCTGCGTGCTGCCGA
** **
4559416 TCCTGCTGCCGCAACCCTTGGTCTGGTCCAAT
128 TCCTGCTGCCGCAACCCTCAGTCCAGTCCAAT
* * * * *
4559448 CTTAGACTGGGAATGAACCCCATATGCCTAAGCCAACCGACGAAACGAGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCG
4559499 AGCAGGCAGG
Statistics
Matches: 176, Mismatches: 31, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
158 1 0.01
159 172 0.98
160 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.20
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTGTGAGCGCTCAAC
CGGCCAAAGGGGTGGGATATGCAAGCCGAGGATCAGCCAGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGCCGCAACCCTCAGTCCAGTCCAAT
Found at i:4560203 original size:26 final size:26
Alignment explanation
Indices: 4560167--4560217 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
4560157 CCGATCCGAT
4560167 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
4560193 CTTAGACTGGGAATGAACTTCGTAT
1 CTTAGACTGGGAATGAACTTCGTAT
4560218 CCATAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:4561106 original size:26 final size:26
Alignment explanation
Indices: 4561070--4561122 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
4561060 CCGATCCGAT
4561070 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
4561096 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
4561122 C
1 C
4561123 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:4561846 original size:26 final size:26
Alignment explanation
Indices: 4561807--4561858 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
4561797 TCCAGTCTGA
*
4561807 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTAGGAATGAACTCCGTAT
4561833 TCTTAGACTAGGAATGAACTCCGTAT
1 TCTTAGACTAGGAATGAACTCCGTAT
4561859 GCGTAAGTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (26 bp):
TCTTAGACTAGGAATGAACTCCGTAT
Found at i:4563091 original size:877 final size:870
Alignment explanation
Indices: 4561096--4564504 Score: 4074
Period size: 901 Copynumber: 3.9 Consensus size: 870
4561086 ACTCTGTATG
* * * * * * *
4561096 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGGAACGAGTGTA-----CGGGCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCG-AGCGGGCGGGCGG
* * *
4561156 GCACTACGCCGGCCAGAGAGACGAGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
65 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTA
* * *
4561221 GGCAGATCTTCATATTTCTACGTGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
130 GGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * * **
4561286 CTTAAGCCTTCACATGAAGTTCCATGGCAAGAAGACTCCTTTTCTATTTTTCACGATTTTCAAAA
195 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * * **
4561351 CTTTTTGCTGTTCAAGATTTTTTAAAATTTTTTCGAAAGGATTTTTCACCCCAAACTTGGTAGAC
260 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG-AAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * * *
4561416 ATGATCCTTGTATTTTTATTGGCATGCAAAAAAAAATTCAGCTAAAAAATCAAAGTGTACAAGAT
324 ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGAGTACAAGAT
*
4561481 TTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAT-GCTACTGGCAGCAAACCT
389 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT-AATGGCTACTGGCAGCAAACCT
* * *
4561545 GTAAAATCTCAAATGCTCTTTGAGGGGGTATGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA
453 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
*
4561610 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCGCACAGCCGCCCCGA
518 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCC-CCCAGCCGCCCCGA
** * * * * * * * *
4561675 TCGTCGGAACCCCAATGCCGCTGGTTAGGTTCTCCGGTGATGCACCGGCGATGGTTCCCCGATGA
581 TCACCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGA
* * * * *
4561740 AGAAAAATGCGGCTCCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCAGTCT
646 AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCC
4561805 GATCTTAGACTGGGAATGAACTCCGTATTCTTAGACTAGGAATGAACTCCGTATGCGTAAGTCAA
711 GATCTTAGACTGGGAATGAACT-C-----C----A-T----ATG-----C-----C-TAAGTCAA
* ** *
4561870 CCCATTAAACGAGCATGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTTGAGGATCAG
750 CCCATGAAACGAGTGTGCGGGCGCTCAG-CGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCAG
* * * * ** **
4561935 ACGGGTCCCCCTCTGCATGCTACCGATCTTGC--CGCAACCCTCGGTCTTGTCCAAT
814 ACGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACGCAACCCTCAGTCCGGTCTGAT
* * **
4561990 CTTAGACTGGGAATGAACTCCGTATGCGTAAGCCAACCGATG-AAC---TGAGCGGGCGAACGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGAGCGGGCGGGCGGG
* * *
4562051 CACTACACTGGCCAGAGAGACGGGATGTGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
4562116 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * ****
4562181 TTAAGCCTTCACGTGAAGTTTCATGGGAAGACGACTCGTTTTTTATTTTTCACGATTTTTTCTCC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * *
4562246 TTTTTCCGATTCGAGATTTTTTAAAAGTTTTTTCGCAAGGAGTATTGGCCCTAAACTTGGTAGAC
261 TTTTTACGGTTCGAGATTTTTTAAAA-TTTTTTCG-AAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
4562311 ATGATCCATGTA-TTTTGTTGGCATGC-CACAAAACATTCAGCTAAAAAACTTGAACAGTACAAG
324 ATGATCCTTGTATTTTTGTTGGCATGCACA-AAAAAATTCAGCT-AAAAACTCGAAGAGTACAAG
*
4562374 ATTTTGTGACCATTT-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGAAAAAA
387 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG--CAAA
*
4562438 CCTGTAAAATCTCAAATCCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
450 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
4562502 CCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCAGCC-CCCCG
515 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCGCCCCG
* * * * *
4562566 ATCACCGGAACCCCAATGCCACCAGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCCTGACA
580 ATCACCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACG
*
4562631 AAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTC
645 AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTC
*
4562696 CGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCT
710 CGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCT
* * ** * * * *
4562761 CAGCATGCCTGAGGGGCGAAATGCGCATGTCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCG
775 CAGC-GGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCAGACGGGTCCCCCTCTGCGTGCTGCCG
**
4562826 ATCCTGCTATCGCAACCCTCAACCCGGTCTGAT
839 ATCCTGCTA-CGCAACCCTCAGTCCGGTCTGAT
*
4562859 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGATGAAACGAGCGGGTAGACGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGC--G-AG-CGGGCGGG
* * * * * *
4562924 CGGGCACTACGCTGGCCAGAGAGATGGGATACGCAGGCCGTGAATCGATAGGGTGGTAGGTGGGT
62 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
*
4562989 TTAGGCATATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
127 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
4563054 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* *
4563119 AAACATTTTACGGTTC-ATGATTTTTTAAAATTTTATCGAATGGAGTTTTGG-CCCAAACTTGGT
257 AAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGAA-GGAGTTTTGGCCCCAAACTTGGT
* ** * * * *
4563182 AGACGTGATTGTTATATTTTTGTTGGTATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACA
320 AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGAGTACA
* * * *
4563247 AGATTTTGTGACCATCTAAAAAAATTGT-CCCAGTTT-AGACACTTTAATTGCTACTGGCAGCAA
385 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
4563310 ACCTGTAAAATCTAAAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
449 ACCTGTAAAATCT-CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * * * * *
4563375 GGCCAATATAAGAGCCAAGTACCATCACCCATTGCACATCAAGTGTGCACACCCTCCCCGGCCCC
513 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CCCCAG-CCG
* * * * ** * * *
4563440 CCCCAATCACCGAAAACCTAATACCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGAGCCC
575 CCCCGATCACCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCC
** * * * * *
4563505 CGGTGAAGAAAAATGCAGCACCAACACATGCCCAAGCCCAGCATGTGCTGCCGTAACCCTCAGTC
640 CGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-
* *
4563570 CGGCCCGATTTTAGACTTGGAATGAACTTCATATACTTAGACTGGGAATGAACTCCATATGCCTA
700 CGGTCC--------A----G--T---C--C-GAT-CTTAGACTGGGAATGAACTCCATATGCCTA
* * * * *
4563635 GGTCAACCCATGGAACGAGTGTGCGGGC-CTTCAACCGGCCAGAGGGGCGGGATGCACAAG-CCA
744 AGTCAACCCATGAAACGAGTGTGCGGGCGC-TC-AGCGGCCAGAGGGGCGGGATGCGCAAGTCGA
* * ** * *
4563698 CGGATCAGTCGGGTCGCCCTCTATGTGGTGCCGATCCTGCTACCGCAACCTTCAGTCCGGTCTGA
807 -GGATCAGACGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTA-CGCAACCCTCAGTCCGGTCTGA
4563763 T
870 T
* * * *
4563764 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCAACGAAACGAGCGAGCGGTCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGAGCGGGCGGGCGGG
* *
4563829 CACTACGCCGGCCAGAAAGACGCGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * *
4563894 GCACATCTTCACATTTCTACGTGCCCATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCC
131 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
4563959 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTCTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * *
4564024 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTGGAAGGTGTTTTGGCCCCAAACTTGGTAGACCT
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGACAT
* * * * **
4564089 GATCCTTTTATTTATGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTTTACAAGATTT
326 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGAGTACAAGATTT
* *
4564154 TGTGACCATTTGGAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTA
391 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
4564219 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATA
456 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * **
4564284 TAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGCGCACACCCCCATAGCCTCCCCGATCGT
521 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CAGCCGCCCCGATCAC
* * *
4564349 CGAAACCCCAATGCCATCGGTCAGGTTCTCCAGCGATGCTCCGGTGATGGTGCCCCGACGAAGAA
585 CGAAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAA
* * * ** *
4564414 AAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCACAACCCCCGGTCTGGTCCGATA
650 AAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATC
* *
4564479 TTAGACTGGGGATGAACTCCGTATGC
715 TTAGACTGGGAATGAACTCCATATGC
4564505 TTAGACTGGG
Statistics
Matches: 2170, Mismatches: 276, Indels: 159
0.83 0.11 0.06
Matches are distributed among these distances:
865 1 0.00
866 87 0.04
867 1 0.00
869 56 0.03
870 3 0.00
872 1 0.00
873 39 0.02
874 14 0.01
875 166 0.08
876 57 0.03
877 220 0.10
878 2 0.00
879 99 0.05
880 3 0.00
881 2 0.00
882 2 0.00
883 1 0.00
884 5 0.00
886 1 0.00
889 1 0.00
890 2 0.00
891 1 0.00
892 140 0.06
893 13 0.01
894 309 0.14
895 155 0.07
896 28 0.01
897 1 0.00
898 3 0.00
899 105 0.05
900 12 0.01
901 411 0.19
902 45 0.02
903 2 0.00
904 4 0.00
905 176 0.08
906 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (870 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGAGCGGGCGGGCGGG
CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGACAT
GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGAGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCGCCCCGATCACC
GAAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAA
AATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCT
TAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAGCGG
CCAGAGGGGCGGGATGCGCAAGTCGAGGATCAGACGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
TACGCAACCCTCAGTCCGGTCTGAT
Found at i:4563617 original size:26 final size:26
Alignment explanation
Indices: 4563580--4563629 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
4563570 CGGCCCGATT
* *
4563580 TTAGACTTGGAATGAACTTCATATAC
1 TTAGACTGGGAATGAACTCCATATAC
4563606 TTAGACTGGGAATGAACTCCATAT
1 TTAGACTGGGAATGAACTCCATAT
4563630 GCCTAGGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATAC
Found at i:4568535 original size:26 final size:26
Alignment explanation
Indices: 4568497--4568549 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4568487 CTGGTCTGAT
*
4568497 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4568523 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4568549 C
1 C
4568550 CCAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4569057 original size:904 final size:897
Alignment explanation
Indices: 4565839--4570705 Score: 6073
Period size: 891 Copynumber: 5.5 Consensus size: 897
4565829 TCGATCCGAT
* * * ** * *
4565839 CTTAGACTGGGAATGAACTCCGTATGCCCAAGTCAACCAATGAAACGATAGTGTGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
4565904 CGGCCAGAGGGGCGGGATGAGTAAGCTGGGGATCGGCCGGG-ACCCCTCTACGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * * *
4565968 TGCT-GTAGCAACCCTCCATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTATGCCA
131 TGCTACCA-CAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
4566032 ACCGACGAAACGAGTGGGAGGGCGTGCGGGCGGGCACTATGCTAGCCAGAGAGACGGGAGGCGCA
195 ACCGACGAAACGAG-CGGCGGGCG-GTGGGCGGGCACTA-GC-CGCCAGAGAGACGGGATGCGCA
* ***
4566097 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTATGTGCCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * * * *
4566162 ATTTTTATGGCTTGTAAATTTATACAATCGTCCCTTCAGCCTTCACCTGAAGTTTCATGGCAGGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * ** *
4566227 TGACCCATTTTCTATTTTTCACGATTTTTGC-AACTTTTTGTGGTTTAGGATTTTTCAAAATTTT
386 CGACTCGTTTTCTATTTTTCACGA-TTTT-CAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * **
4566291 TTCAGAAGGTGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAA
449 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAA
* * * * *
4566356 AAAAATTCAGTTAAAAACACGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTTTCCCTATT
514 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
4566421 TTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
579 TTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTG
* * *
4566486 AGTTCTCGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCGCAC
644 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCGAAGTACCAGCACCCATCGCAC
* * * *
4566551 ATCATGTGGCCACACCCCCCCGGCTCCCCCGATCGTCGGAACCCTAACGCCATCGGTCAGGTTCT
709 ATCATGTGG-CACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* ** *
4566616 CCGACGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCTGAGCCC
772 CCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCC
* *
4566681 AACATGTGCTGCCGCAACCCTCGGTCTGGTGC-GATCTTAGACTGGGAATGAACTTCGTATG
837 AGCATGTGCTGCCGCAACCCTCGGTCTGGT-CTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
4566742 CTTAGAATGGGAATGAACT-CTTATGCCTACGTCAACCCACGGAACGAGCGTGCGTGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
4566806 CGGCTAGAGGGGCGGGATGCGCCAGTCGGGGATCGG-CCGGTCCCCCTCTGCGTGCTACCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
4566870 TGCTATCACAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
131 TGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
4566935 TCC-ATGAAATGA---GTGGGCGAT---C--GCTC-AGCTGGCCAGAGTGACGGGATGCGCAAGC
196 -CCGACGAAACGAGCGGCGGGCGGTGGGCGGGCACTAGC-CGCCAGAGAGACGGGATGCGCAAGC
* * * * *
4566990 CGGGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTTTACATGCCAGTGCCATT
259 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
4567055 TTTATGGATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
324 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * ** *
4567120 CTCATTTTCTATTTTTCACGATTTCTAAAACTTTTTACGGTTCTAGATTTTTTTAAATTTTTTCG
389 CTCGTTTTCTATTTTTCACGATTT-TCAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
* * ** *
4567185 GAAGGAGTTCTGGCCCCAAACTTGCTAGATGTGATCCTTGTATTTTTTTTTGGCTTGCACAAAAA
453 GAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA-TTTTTTTTGGCATGCACAAAAA
* * * * *
4567250 AATTCAACTAAAAACTCGAAGTGTACTAGATTTTGTGACCATTTGAAAAAATTGTCCCTATCTTA
517 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
*
4567315 GACACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCATAATGCTCTTTAAAGGGGTGTGAG
582 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA-AATGCTCTTTAAAGGGGTGTGAG
*
4567380 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCGAAGTACCAGCACCCATCGCACAT
646 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCGAAGTACCAGCACCCATCGCACAT
* *
4567445 CATGTGGGCACACCCCCCGGCTCCCCCGATCGTCGGAACCCCAACGCCGTCGGTCAGGTTCTCCG
711 CATGT-GGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * *
4567510 ACGATGCTCCGGTGATGGTGCCACGGCGAAGAAAAATGCAGCACCAGCACATGCCCAAGCCCAGC
775 ACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGC
* * * *
4567575 ATGTACTGTCGCAACCCTCGATCTGGTAC-GATCTTAGACTGGGAATGAACTTCGTATG
840 ATGTGCTGCCGCAACCCTCGGTCTGGT-CTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
4567633 CTTAGAATGGGAATGAACTCC-TATGCCTAAGTCAACCCACGAAACGAGCGTGCGTGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
4567697 CGGCCAGAGGGTCAGGAT-CGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * * * *
4567761 TGCTGTCACAACCCTCGGTCCGGTCTGATCTTATACTGGGAATGAACTCTGTATGCCTAAGTCAA
131 TGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * *
4567826 TCAATGAAACGA---GCGTGCGGT---C--GC-TTAGCCGGCCAGAGTGGCGAGATGCGCAAGCC
196 CCGACGAAACGAGCGGCGGGCGGTGGGCGGGCACTAGCC-GCCAGAGAGACGGGATGCGCAAGCC
* * *
4567882 GGGGATCGATAGCGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
4567947 TTATGGATTGTAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
*
4568012 TCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
390 TCGTTTTCTATTTTTCACGA-TTTTCAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* * * * *
4568077 AAGGAGTTCTAGCCCCATACTTGCTAGACATGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAA
454 AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
*
4568142 TTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
519 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
*
4568207 CACTTTAATGGCTACCGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTC
584 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTC
* * *
4568272 TCGAGGTTTGATGAGGGATAAGGGGCGAATATAAGGGCGAAGTACCAGCACCCATTGCACATCAT
649 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCGAAGTACCAGCACCCATCGCACATCAT
* * * *
4568337 GTGCGCACACCCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCC-TCCAGTCAGATTCTCTGA
714 GTG-GCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGT-CGGTCAGGTTCTCCGA
* * **
4568401 CGATGCTTCGGTGATGGAGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
776 CGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCA
4568466 TGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
841 TGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
4568523 CTTAGACTAGGAATGAACTCCGTATGCCCAAGTCAACCCACGAAATGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * * *
4568588 CGGCCAGAGGGATGGGATGCGCATGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGTTCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
4568653 TGCTACCACAGCCCTCCATCCGAT-TCAATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTACCACAACCCTCGATCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
4568717 ACCGATGAAACGAGCGGGCGGGCGGGTGGGCGGGCACTACGCCGTCCATAGAGACGGGATGCGCA
195 ACCGACGAAACGAGC-GGCGGGC-GGTGGGCGGGCACTA-GCCG-CCAGAGAGACGGGATGCGCA
*
4568782 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATTCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * * *
4568847 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCATAAGCTTTCACATGAAGTTTAATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
4568912 CGACTCGTTTCCTATTTTTCATGATTTTCAAACCTTTTTGCGGTTCGGGATTTATTAAAATTTTT
386 CGACTCGTTTTCTATTTTTCACGATTTTCAAA-CTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
*
4568977 TCGGAAGGAATTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAA
450 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAA
* *
4569042 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGCAAAAAGTGTCCCCATTT
515 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * * *
4569107 CAGACACTTTAATTGCTACTGGTAGCAAACCTGTAAAATGTCAAACGCTCTTT-AAGGGGATGTT
580 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGG-TGTG
* * * *
4569171 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCTAGTATAAGTGGC-AAGTGCCAGCACCCATCGCA
644 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG-GGCGAAGTACCAGCACCCATCGCA
* * * * *
4569235 CATCATCTGTGCACACCCCCCGG-CCCCCCGATCGTCAGAACCCCAATGCCGCCGGCCAAGTTCT
708 CATCATGTG-GCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * ** * * * * * *
4569299 CCGGCGATGCTCCGATGATACTACCTCGGCAAAGAAAAATGCAGCACCAGCACATGCTCAAGCCC
772 CCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCC
* * * *
4569364 AGCATGTGCTGCTGCAACACTCGGTCTAGTCTGATCTTAGACTGGGAAGGAACTCCGTATG
837 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
4569425 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATG--ATGAGCGTGTGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * *
4569488 CGGCCAGAGGGGCGGGATGCGCAAGGTGGGGATCGG-CTGGGTCCCCCTCTGCGCGTTGTCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATC
* * * * *
4569552 CTGCTGCCACAACCCATAG-TCCGGTCTGATCTTAGATTGGGAATGATCTCTGTATGCCTAAGCC
130 CTGCTACCACAACCC-TCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
4569616 AACCAACGAAACGAGCAGACGGGC---GGGCGGGCACTATGCCAGCCAGAGAGACGGGATACGCA
194 AACCGACGAAACGAGC-GGCGGGCGGTGGGCGGGCACTA-GCC-GCCAGAGAGACGGGATGCGCA
* * *
4569678 AGCCGTGAATCGATAGGGTGGTAGGTGGGTTTGGGGACATCTTCATATTTCTGCATGCCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
4569743 ATTGTTATGGCTTGTAAATTCATACAATGGT-TCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
4569807 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
386 CGACTCGTTTTCTATTTTTCACGA-TTTTCAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* * *** * * *
4569872 TCAGAAGGATTTTTTATCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCCTACACAAA
450 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAA
*
4569937 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACGATTTGAAAAAAGTGTCCCCATTT
515 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * * *
4570002 CAAACACTTTAACGG---C-GGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGAGTGA
580 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGA
* * *
4570063 GTTCTCGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCATCCATCGCACA
645 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCGAAGTACCAGCACCCATCGCACA
* *
4570128 TCATGT-GCACACCCCCCGGCCTCCCCGATCGTCGGAACCCAAATGCCGTCGGTCAGGTTCTCCG
710 TCATGTGGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * ** * *
4570192 ACGATTCTGCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACTTGCTCGAGCCCAGC
775 ACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGC
* *
4570257 ATGTGCTACCGCAA----C--T-T-G-C-G------GTCT-GG--T---CT--G-AT-
840 ATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* *
4570289 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** * * * *
4570354 CAGCCAGAGGGGCAGAATTCATAAGCCGGGGATCGGTCGGGACCCCCTTTGCATGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** ** *
4570419 TG-TAGCCACGACCCTCGGTTTGGTCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTA-CCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * ** * * *
4570483 ACCGACGAAACGAGCATGCGAGCCGGTGGGTGGGCACTACGTTGGTCAGAGAGACAGGATGTGCA
195 ACCGACGAAACGAGC-GGCG-GGCGGTGGGCGGGCACTA-G-CCGCCAGAGAGACGGGATGCGCA
* *
4570548 AGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
4570613 ATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCATTCACGTGCAGTTTCATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
*
4570678 CGACTCGTTTTCTATTTTTCACAATTTT
386 CGACTCGTTTTCTATTTTTCACGATTTT
4570706 TGAATCTTTT
Statistics
Matches: 3486, Mismatches: 421, Indels: 147
0.86 0.10 0.04
Matches are distributed among these distances:
864 40 0.01
865 5 0.00
866 134 0.04
867 3 0.00
868 2 0.00
870 123 0.04
871 51 0.01
873 2 0.00
874 3 0.00
880 1 0.00
881 1 0.00
882 1 0.00
883 1 0.00
884 1 0.00
886 1 0.00
888 1 0.00
889 112 0.03
890 644 0.18
891 844 0.24
892 207 0.06
893 2 0.00
894 1 0.00
895 213 0.06
896 136 0.04
897 4 0.00
898 6 0.00
899 1 0.00
900 137 0.04
901 5 0.00
902 326 0.09
903 45 0.01
904 430 0.12
905 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGCGGGCGGTGGGCGGGCACTAGCCGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCACGATTTTCAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAA
GGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCGAAGTACCAGCACCCATCGCACATCATGT
GGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATG
CTCCGGTGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:4569435 original size:26 final size:26
Alignment explanation
Indices: 4569399--4569451 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4569389 CTAGTCTGAT
4569399 CTTAGACTGGGAAGGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
*
4569425 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
4569451 C
1 C
4569452 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:4571158 original size:26 final size:26
Alignment explanation
Indices: 4571124--4571175 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
4571114 TTTTCTATTT
* *
4571124 TTCATGATTTTTGAAACTTTTTTCGG
1 TTCAAGATTTTTGAAAATTTTTTCGG
*
4571150 TTCAAGATTTTTTAAAATTTTTTCGG
1 TTCAAGATTTTTGAAAATTTTTTCGG
4571176 AAGGAGTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.10, G:0.13, T:0.54
Consensus pattern (26 bp):
TTCAAGATTTTTGAAAATTTTTTCGG
Found at i:4572503 original size:87 final size:86
Alignment explanation
Indices: 4572351--4572535 Score: 291
Period size: 87 Copynumber: 2.1 Consensus size: 86
4572341 AAAATTCAGC
** * *
4572351 TAAAAACTTGAAGTGTGCAAGATTTTGTGACATTTCAAAAAGTGTCCCCATTTCAGACACATTAA
1 TAAAAACTCAAAGTGTACAAGATTTTGTGACATTTAAAAAAGTGTCCCCATTTCAGACACATTAA
4572416 TGGCTACTGGCAGC-AACCTG
66 TGGCTACTGGCAGCAAACCTG
*
4572436 TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
1 TAAAAACTCAAAGTGTACAAGATTTTGTGA-CATTT-AAAAAAGTGTCCCCATTTCAGACACATT
4572501 AATGGCTACTGGCAGCAAACCTG
64 AATGGCTACTGGCAGCAAACCTG
*
4572524 TAAAATCTCAAA
1 TAAAAACTCAAA
4572536 TGCTCTTTAA
Statistics
Matches: 91, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
85 27 0.30
86 5 0.05
87 42 0.46
88 17 0.19
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.28
Consensus pattern (86 bp):
TAAAAACTCAAAGTGTACAAGATTTTGTGACATTTAAAAAAGTGTCCCCATTTCAGACACATTAA
TGGCTACTGGCAGCAAACCTG
Found at i:4572801 original size:26 final size:26
Alignment explanation
Indices: 4572772--4572824 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4572762 CTGGTCCGAT
*
4572772 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
4572798 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
4572824 C
1 C
4572825 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:4573485 original size:12 final size:12
Alignment explanation
Indices: 4573468--4573499 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
4573458 TGAGGGATAG
4573468 GGGGCCAATATA
1 GGGGCCAATATA
4573480 GGGGCCAATATA
1 GGGGCCAATATA
*
4573492 AGGGCCAA
1 GGGGCCAA
4573500 GTACCAGCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.19, G:0.34, T:0.12
Consensus pattern (12 bp):
GGGGCCAATATA
Found at i:4573693 original size:26 final size:26
Alignment explanation
Indices: 4573664--4573716 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4573654 CTAGTCCGAT
**
4573664 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTCCGAATGAACTCCGTATG
4573690 CTTAGACTCCGAATGAACTCCGTATG
1 CTTAGACTCCGAATGAACTCCGTATG
4573716 C
1 C
4573717 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTCCGAATGAACTCCGTATG
Found at i:4574375 original size:12 final size:12
Alignment explanation
Indices: 4574358--4574389 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
4574348 TGAGGGATAG
4574358 GGGGCCAATATA
1 GGGGCCAATATA
4574370 GGGGCCAATATA
1 GGGGCCAATATA
*
4574382 AGGGCCAA
1 GGGGCCAA
4574390 GCACCAGCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.19, G:0.34, T:0.12
Consensus pattern (12 bp):
GGGGCCAATATA
Found at i:4574612 original size:26 final size:26
Alignment explanation
Indices: 4574574--4574652 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
4574564 CTAATCTGAT
* *
4574574 CTTAGACTAGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
4574600 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
4574626 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
4574652 C
1 C
4574653 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:4577061 original size:26 final size:26
Alignment explanation
Indices: 4577032--4577084 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4577022 CCGGTCTGAT
4577032 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4577058 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4577084 C
1 C
4577085 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4577969 original size:26 final size:26
Alignment explanation
Indices: 4577931--4577983 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4577921 GCAGTCTAAT
*
4577931 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
4577957 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4577983 C
1 C
4577984 CTACGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4578745 original size:903 final size:901
Alignment explanation
Indices: 4574855--4582197 Score: 9210
Period size: 903 Copynumber: 8.3 Consensus size: 901
4574845 GATCGATAGG
4574855 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
1 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * * *
4574920 TACAAAATTTTGTGGCCATTTGAAAAAACTGTCCCCATTTCAGACACTTTAATGGCAACTGGCAG
66 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
4574985 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
131 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
4575050 GGGGCCAATATAAGGGCCAAGTAACAGCACCCATCGCACAACATGTGTGCACACCCCCCTGGCCC
196 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCC-GGCCC
* *
4575115 CCTCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCC
260 CC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCC
* * ** *
4575180 CTGCAAAGAAAAATACGGCACCAGCACATGCTCC-AGCCCAGCATGTGCTACCGCAA--CTC--T
324 CGGCGAAGAAAAATGTGGCACCAGCACATGC-CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
*
4575240 -C-G---G----T---CT-GG--T---CT--G-AT-CTTAGACTGGGAATGATCTCCGTATGCCT
388 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
** * * *
4575283 AAGTCAACCCACGAAATAAGCGTACGGGCGCTCAGCCGGCCAGAAGGG-GGGATGCGTAAGCCGG
453 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * * * *
4575347 GGTTCGATCGGGTCCCTCTCTGCGTGCTACTGATCTTGCTGCCACAACCCTCAGTCCGATCTGAT
518 GGATCGACCGGGTCCCCCTCTGCGTGCTACTGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGAT
* * ** * *
4575412 CTTAGACTGTGAATGAACTCCGTATGCCGAAGCCAACCGATAAAACGAGCGGGCGGGAGGGCGGG
583 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGG
*
4575477 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCATA-CCGTGGATCGATAGGCTGGTAGGTGGG
648 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA-AGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
4575541 TTTAGGCACATCTTCATATTTCTG-CATGTCGATGCCATTTTTATGGCTTGTAAATTCATACAAT
712 TTTAGGCACATCTTCATATTTCTGTGA-GCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
4575605 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAGGATTTT
776 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
** * * **
4575670 TGAAACTTTTTGA-GCCTCGGAATTTTTCAAAATTTTTTCGAAAGGAGTTTTCACCCCAAACT
841 TGAAACTTTTT-ACGGTTCGGGATTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
4575732 TTGTAGACGTGATACTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTG
1 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
4575797 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAAACACTTTAATGGCTACTGGCAG
66 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
4575862 CAAACCTATAAAATCTCAAGTGCCCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
131 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* ** * **
4575927 GGGGCTAATATAAGGGCCAAGTACCAGCACAAATCGGACATCATGTGCACACACCCCCCGGCCCC
196 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCC
* * * * * * *
4575992 CATGATCGTCGAAACCCCTATCCCGCCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC
261 C-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCC
* * * * * * *
4576057 GACGAAGAAAAATGTGACACCAGCAAATGCTCGAGCCCAGCATGTGCTACCGCAACCCTTGGTCT
325 GGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* * *
4576122 GGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTGTGCCTAA
390 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * ** * *
4576187 GTCAACCTACGAAATGAGCGTACGGGCGCTCAGCTGGCCAGAGGGGTTGGATGTGCAAGCCGAGG
455 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * ** * * *
4576252 ATTGGCCGGGTCCCCCTCTGCATGCTGCCAATCTTGCTGCTGCAACCCTCAGTTTGGTCCGATCT
520 ATCGACCGGGTCCCCCTCTGCGTGCTACTGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCT
* * * * * * * * * * **
4576317 TAGATTGGGAATGATCTCTGTACGCCTAAGCCAACTGACGAAACGAACGGGTGGGTGGGAGGTTG
585 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCG
* * * * * *
4576382 GGAACTACGTCGGCTAGAGAGATGGGATGCGCAAGCTGTGGATCGGTAGGGTGGTTGGTGGGTTT
650 GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * *
4576447 AGGCACATCTTCATATTTCTG-CATGCCAATGCAATTTTTATGGCTTCTAAATTCATGCAATGGT
715 AGGCACATCTTCATATTTCTGTGA-GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
4576511 CCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCACGATTTTTG
779 -CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* ** *
4576576 AAACTTTTTACGGCTCGAAATTTTTCAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
843 AAACTTTTTACGGTTCGGGATTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
4576636 TGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAGAATTCAGCTAAAAACTCGAAGTG
1 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
4576701 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
66 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
4576766 CAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
131 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
*
4576830 GGGGCCAATATAAGGGCCAAGTAGCAGCACCCA-CTGCACATCATGTGTGCACA-CCCCCGGCCC
196 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-GCACATCATGTGTGCACACCCCCCGGCCC
* * * * *
4576893 TCTCGATCGTCGGAACCTCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTTCGACGATGGTGCCC
260 -CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCC
* * * * * *
4576958 TGGCGAAGAAAAATGCGGCACCAGCACATGTCCGAGCCTAGCATGTGC-GACCGCAACCCACGAT
324 CGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CCGCAACCCTCGGT
*
4577022 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCT
388 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* ** ** * *
4577087 AAGTCAACCCACGAAATGAAAGTGCGGGCGCTCAATCGGCCAGAGGGGCGAGATGCCCAAGCCGG
453 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * * *
4577152 GGATCGGCTGGGTCCCCCTCTGTGTGCTACCGATCCTGCTGCCACAACACTCAGTCTGGTCTGAT
518 GGATCGACCGGGTCCCCCTCTGCGTGCTACTGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGAT
* *
4577217 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGAGCGGGCGGGCGGT
583 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGG
* * * * * *
4577282 CTGGCATTACGCCGGCCAGAAAGACGAGATGCGCAAGCCATGGATCGATA-GGTGGTAGGTGGGT
648 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * * *
4577346 TTACGCACATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAGAATGG
713 TTAGGCACATCTTCATATTTCTGTGAGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
4577411 TCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCA-TATTTTTG
778 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
*
4577475 AAACTTTTTACGATTCGGGATTTTTAAAAATTTTTTCGGAAGGAGTTTT-GCCCCAAACT
843 AAACTTTTTACGGTTCGGGATTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
*
4577534 TGGTAGACGTGATCCTTGTATTTTTGTTGGCAAGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
1 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
4577599 TACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAACGGCTACTGGCAG
66 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
4577664 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
131 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * *
4577729 GGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCGCATATCATGTGTGCAC-CCCTCCGACCCC
196 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCG-GCCC
** * *
4577793 CCCGATCGTCGGAACTTCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCC
260 CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCC
* * * *
4577858 GACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCAGTGC
325 GGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* * * * *
4577923 AGTCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAC
390 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
4577988 GTCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGTGGGATGCACAAGCCGGGG
455 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * ** * * **
4578053 CTCGATCGGGTCCCCCTCTATGTGCTACTGATCCTGCTACCGCAACCCTCGGTCTGGTCTAATCT
520 ATCGACCGGGTCCCCCTCTGCGTGCTACTGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCT
* * *
4578118 TTGACTGGGAATGAACTCCGGATGCCTAAGCCAACCGATGAAACGAGCGAGCGGGCGGGCCGGGC
585 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGG-CGGGC
* * *
4578183 GGGCACTACG-CAGGCCAAAGAGAGGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGT
649 GGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
4578247 TTAGGAACATCTTCATATTTCTATGAGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGC
713 TTAGGCACATCTTCATATTTCTGTGAGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
4578312 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
778 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * **
4578377 AAACTTTTTACGGTTCGGGATTGTTTAAAATTTTTTTGGAAGGATTTTTCACCCCAAACT
843 AAACTTTTTACGGTTCGGGATT-TTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
** ** *
4578437 TATTAGACACGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTG
1 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
4578502 TACAAGATTTTATGATCATCTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
66 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
4578567 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAG
131 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * **
4578632 GGGACCAGTATAAGGGCCAAGTACCAGCACCCATTACACATCATGTGTGCACACCCCCCGGCCCC
196 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCC
** * ** *
4578697 CCGATCACCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCTG
261 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCG
* * *
4578762 GCGAAGAAAAATGTGGCACCAGCACTTGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
326 GCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* * * *
4578827 GT-TCAATCGTAGACTGGGAACGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAA
391 GTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * * * *
4578891 GTCAACGCACGAAACGAGCGAGCGGGAGCTTAGTCGGCCAAAGGGGTGGGATGCGCAAGTCAGGG
455 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * * * * **
4578956 ATTGGCCGGGTCCCCCTCTGCATGCTGCTGATCCTACTGTCGCAACCCT-TGATCTGATCCGGCC
520 ATCGACCGGGTCCCCCTCTGCGTGCTACTGATCCTGCTGCCGCAACCCTCAG-TCTGGTCCGATC
* * *
4579020 TTAGACTAGGAATGAACT-C-----CCTAAGCCAACCGATG-AA--A-CGAGCGGGTGGGCGGGC
584 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGC
** * *
4579075 GGGCACTACGTCGGCTTGAGA-AGCGGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGGGT
649 GGGCACTACGTCGGCCAGAGAGA-CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
4579139 TTAGGAACATCTTCATATTTCTATGAGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGC
713 TTAGGCACATCTTCATATTTCTGTGAGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * *
4579204 TCCCTTAAGCCTTCACGTGAAATATCACGGTC-AGACGACTCTTTTTCTATTTTTCACAATTTTT
778 TCCCTTAAGCCTTCACGTGAAGTTTCATGG-CAAGACGACTCGTTTTCTATTTTTCACGATTTTT
** ** * * *
4579268 GAAACTTTTTGTGGTTTTGGATTTTTTAAAATTTTTTTGAAAGG-GTTTTGGCCCTAAACT
842 GAAACTTTTTACGGTTCGGGA-TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
4579328 TGGTAGACGTAATCCTTGTATTTTTTTTGGCATGCACAAAAGAATTCAGCTAAAAACTCGAAGTG
1 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
4579393 TATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGAC-CTTTTAATGGCTACTGGCA
66 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC-TTTAATGGCTACTGGCA
* * * ** *
4579457 GCAAACCAGTACAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGATATTTGATGAGGGATT
130 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
4579522 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
195 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCC
* * * * * *
4579587 CTCCGATCGCCGAAACCACTATGCCGTCGGTCAGGTTCTTCGGCGATGCTTCGGCGATGGTGCCC
260 C-CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCC
* * * * * *
4579652 CGGGGAAGAAAAATATGGCACCAGCACATGCCCAAGCCTAGCTTGTGCTGCCACAACCCTCGGTC
324 CGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* *
4579717 TCGGTCCT-ATCTTAGACTGGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCC
389 -CGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * *
4579781 TAAGTCAACCCATGACACGAGCATGCGGGCGCTCAGCCGGCC-GAGGGGCAGGATGCTCAAGCCG
452 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* ** * * * * *
4579845 GGGATCGACCAGGTCCCCCTCTATGTGCTGCTGATCCGGCTACAGCAACCCTCGGTCTGGTCCGA
517 GGGATCGACCGGGTCCCCCTCTGCGTGCTACTGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGA
* ** * *
4579910 TCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGAAAAAATGAG-TAGGCGGGCGGGCG
582 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGA-GCGGGCGGGCG
* *
4579974 GGCGGGCACTACG-CTGGCCAGAGAGATGGGATACGCAAGCCGTGGATCGATAGGGTGCG-AGGT
646 GGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG-GTAGGT
4580037 GGGTTTAGGCACATCTTCATATTTCTGTGTA-CCAATGCCATTTTTATGGCTTGTAAATTCATAC
709 GGGTTTAGGCACATCTTCATATTTCTGTG-AGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
4580101 GATGGTCCCTTAAGCCTTCACGTGAAGTGTCATAGCAAGACGACTCATTTTCTATTTTTCACGAT
773 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** ** * *
4580166 TTTTGAAACTTTTTGTGACTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACT
838 TTTTGAAACTTTTTACGGTTCGGGA-TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* *
4580231 TGGTAGACGTGATCCTTGTATTTTTGTTGGGATGCACAAAAAAATTCAGCTAAAAACTTGAAGTG
1 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * * *
4580296 TACAAAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAAACACTTTAATTGCTACTGGCAG
66 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
4580361 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGACGGATAG
131 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * * * * * *
4580426 GAGGCCAATATAAGGGCCAATTACCAGCATCCGTCACACATCATGCGCGCACACCACTCCTGGCC
196 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACC-C-CCCGG-C
* * * * *
4580491 CCCCCGATCGTCGGAACCCTAGA-GCCGTCGGTCAGGTTCTCCGGTGATGCTCCAGTGATGGCGC
258 CCCCCGATCGTCGGAACCCCA-ATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * * * *
4580555 CCCGGCGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATTTGCTGCCGCAATCCTCGG
322 CCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* *
4580620 TCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCC
387 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * **
4580685 TAAGTCCAACCCATGAAACGAGCGTGCGGGTGCTTAGCCAACCAGAGGGGCGGGATGCGCAAGCC
452 TAAGT-CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* ** * * * * * **
4580750 AGGGATCGGTCGAGTCCCCCTCTGCGTGCTACTGATCCTCCTACCACAACCCTC-GATCCGGTAT
516 GGGGATCGACCGGGTCCCCCTCTGCGTGCTACTGATCCTGCTGCCGCAACCCTCAG-TCTGGTCC
* * *
4580814 GATCTTAGACCGGGAATGAACTCCGTATGCCTAAGCCAACCAACG-AA--A-TGA----GCGGGC
580 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGC
*
4580871 GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCAGTGGATCGATAGGGTGGTAGGTG
645 GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
4580936 GGTTTAGGGACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
710 GGTTTAGGCACATCTTCATATTTCTGTGAGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
4581001 TGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATCT
775 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
4581066 TTGAAACTTTTT---G-T--GG--------------TTC------A-------CCCCAAACT
840 TTGAAACTTTTTACGGTTCGGGATTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
** * *
4581095 TATTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTG
1 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
4581160 TACAAGATTTTGTGACCATCTGAAAAAAGTGTCCCCACTTCAGACACTTTAATGGCTACTGGCAG
66 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
4581225 CAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGTTTTGAGTTCTCGAGGTTTGATGAGGGATAG
131 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
4581290 GAGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCAT-T-T--A-A------GG----
196 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCC
* *
4581340 --G---GT-----------T----T--G--A-GTTCTCCGGCGATGCTCCGACGATGGTGCCTCG
261 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCG
* ** * ** *
4581380 AC-ATAGAAAAATACGACACCAGCACATGCAAGAGCCCAGCATGTGCTGCCACAACCCTCGGTCC
326 GCGA-AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* * *
4581444 GGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGCATGAACTCCGTATGCCTAA
390 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* *
4581509 GTCAACCCACGAAACGAGCGTGCGGGCGCTCCA-CCGGCCAGAGGGGCGAGATGCGCAAGTCGGG
455 GTCAACCCACGAAACGAGCGTGCGGGCGCT-CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * * ** * *
4581573 GATCGCCCGGGTCCCCCTCTACATGCTACCGATCCTGCTGTCGCAACCCTCAGTCCAGTCCAATT
519 GATCGACCGGGTCCCCCTCTGCGTGCTACTGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATC
* * * *
4581638 TTGGACTGGGAATGAACTCCGTATGCCTAAACCAATCGACGAAACGAGC-AGACGGGTGGGCGGG
584 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAG-CGGGCGGGCGGG
*
4581702 CGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
648 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * * *
4581767 TGAGGCACATCTTCATATTTCTGCGTGCCAATGCCA-TTTTATGGCTTGTAATTTCATATAATGG
713 TTAGGCACATCTTCATATTTCTGTGAGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
4581831 TCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAGTTTTG
778 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* **
4581896 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAATAGTTTTGGCCCCAAACT
843 AAACTTTTTACGGTTCGGGA-TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
4581956 TGGT-GAACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAATTCAAAGT
1 TGGTAG-ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
4582020 GTACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCA
65 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
4582085 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGGATA
130 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
4582150 GGGGGCCAAAATAATGGCCAAGTACCAGCACCCATCGCATATCATGTG
195 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
4582198 CTCACGTGCT
Statistics
Matches: 5637, Mismatches: 690, Indels: 292
0.85 0.10 0.04
Matches are distributed among these distances:
820 137 0.02
821 148 0.03
822 1 0.00
823 2 0.00
824 1 0.00
826 1 0.00
827 95 0.02
828 105 0.02
830 1 0.00
831 1 0.00
833 1 0.00
841 2 0.00
844 1 0.00
848 3 0.00
851 2 0.00
854 1 0.00
859 1 0.00
860 2 0.00
861 226 0.04
862 1 0.00
864 229 0.04
871 1 0.00
875 1 0.00
876 106 0.02
877 236 0.04
878 2 0.00
880 1 0.00
882 1 0.00
885 1 0.00
889 1 0.00
890 1 0.00
891 246 0.04
892 411 0.07
893 107 0.02
894 2 0.00
895 2 0.00
896 2 0.00
897 17 0.00
898 374 0.07
899 477 0.08
900 101 0.02
901 201 0.04
902 714 0.13
903 1084 0.19
904 334 0.06
905 142 0.03
906 111 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCC
CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCG
GCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
TCGACCGGGTCCCCCTCTGCGTGCTACTGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTT
AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCGG
GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTGTGAGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
CTTTTTACGGTTCGGGATTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
Found at i:4578872 original size:26 final size:26
Alignment explanation
Indices: 4578836--4578886 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4578826 GGTTCAATCG
4578836 TAGACTGGGAACGAACTCCGTATGCT
1 TAGACTGGGAACGAACTCCGTATGCT
* *
4578862 TAGACTGGGAATGAACTCTGTATGC
1 TAGACTGGGAACGAACTCCGTATGC
4578887 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAACGAACTCCGTATGCT
Found at i:4579767 original size:26 final size:26
Alignment explanation
Indices: 4579727--4579779 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4579717 TCGGTCCTAT
*
4579727 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCATATG
*
4579753 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGCAATGAACTCCATATG
4579779 C
1 C
4579780 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:4580660 original size:26 final size:26
Alignment explanation
Indices: 4580631--4580683 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4580621 CCGGTCTGAT
*
4580631 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
4580657 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
4580683 C
1 C
4580684 CTAAGTCCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:4581488 original size:26 final size:26
Alignment explanation
Indices: 4581452--4581504 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4581442 CCGGTCCGAT
*
4581452 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4581478 CTTAGACTGGGCATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4581504 C
1 C
4581505 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4582893 original size:736 final size:740
Alignment explanation
Indices: 4581478--4582934 Score: 2228
Period size: 736 Copynumber: 2.0 Consensus size: 740
4581468 ACTCTGTATG
* * * *
4581478 CTTAGACTGGGCATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCCAC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCACAAC
** * * **
4581543 CGGCCAGAGGGGCGAGATGCGCAAGTCGGGGATCGCCCGGGTCCCCCTCTACATGCTACCGATCC
66 CGGCCAGAGGGGCGAGATGCGCAAACCGAGAATCAACCGGGTCCCCCTCTACATGCTACCGATCC
* * *
4581608 TGCTGTCGCAACCCTCAGTCCAGTCCAATTTTGGACTGGGAATGAACTCCGTATGCCTAAACCAA
131 TGCTGTCGCAACCCTCAGTCCAGTCCAATCTTAGAATGGGAATGAACTCCGTATGCCTAAACCAA
* * * ** *
4581673 TCGACGAAACGAGCAGACGGGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAA
196 TCGACAAAAC-AGCAGACGGGCGAGCGGGCGGGCACTACCCCGGCCAGAGAGACGGGATGCGCAA
*
4581738 GCCGTGGATCGATAGGGTGGTAGGTGGGTTGAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTGAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
4581803 TTTTATGGCTTGTAATTTCATATAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACG
325 TTTTATGGCTTGTAAATTCATAGAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACG
* *
4581868 ACTCGTTTTCTATTTTTCACGAGTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
390 ACTCGTTTTCTATTTTTCACGAGTTTTGAAACTTTTTACGGTTCGAGATTTTTAAAAAATTTTTC
* * *
4581933 GGAAATAGTTTTGGCCCCAAACTTGGTGAACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAC
455 GGAAAGAGTTTTGGCCCCAAACTTGGTGAACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
4581998 AATTCAGCTAAAAATTCAAAGTGTACAAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCA
520 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
4582063 AACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
585 AACACTTTAACGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * *
4582128 TTTCGAGGTTTGATGAGGGATAGGGGGCCAAAATAATGGCCAAGTACCAGCACCCATCGCATATC
650 TCTCGAGGTTTGATGAGGGATAGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCACACATC
4582193 ATGTGCTCACGTGCTGGTACTTGGCC
715 ATGTGCTCACGTGCTGGTACTTGGCC
* * * *
4582219 CTTAGACTGGGAATGAACTCCATATGCCTAGGTCAACTCACGAAACGAGCGTGCGGGTGCACAAT
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCACAAC
* ** ** *
4582284 CGGCCAGAGGGGC-AGGATGCGCAAACCGAGAATCAATCGGGTCCCCCTCTATGTGCTGTCGATT
66 CGGCCAGAGGGGCGA-GATGCGCAAACCGAGAATCAACCGGGTCCCCCTCTACATGCTACCGATC
* * * * *
4582348 CTGCTG-CAGCAACCCTCAGTCCGGTGCAATCTTAGAATGGGAATGAATTTCGTATGCCTAAGCC
130 CTGCTGTC-GCAACCCTCAGTCCAGTCCAATCTTAGAATGGGAATGAACTCCGTATGCCTAAACC
4582412 AATCGACAAAAC-G-AG-CGGGCGAGCGGGCGGGCACTACCCCGGCCAGAGAGACGGGATGCGCA
194 AATCGACAAAACAGCAGACGGGCGAGCGGGCGGGCACTACCCCGGCCAGAGAGACGGGATGCGCA
*
4582474 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTGAGGCACATCTTCATATTTCTGCATGCCAATGCC
* **
4582539 ATTTTTATGGCTTGTAAATTCATAGAATTGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
324 A-TTTTATGGCTTGTAAATTCATAGAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGA
* * * *
4582604 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCTGTTCGGGATTTTTAAAAAATTTT
388 CGACTCGTTTTCTATTTTTCACGAGTTTTGAAACTTTTTACGGTTCGAGATTTTTAAAAAATTTT
* *
4582669 T-GGAAGGAGTTTTGTCCCCAAACTTGGT-AGACATGATCCTTGTATTTTT-TTGGCATGCACAA
453 TCGGAAAGAGTTTTGGCCCCAAACTTGGTGA-ACATGATCCTTGTATTTTTGTTGGCATGCACAA
*
4582731 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATT
517 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
4582796 TCAGACACTTTAACGGCTACTGACAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTG
582 TCAAACACTTTAACGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
4582861 AGTTCTCGAGGTTTGATGAGGGTTAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
647 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCACAC
4582926 ATCATGTGC
712 ATCATGTGC
4582935 GCACACCCCC
Statistics
Matches: 647, Mismatches: 65, Indels: 13
0.89 0.09 0.02
Matches are distributed among these distances:
736 204 0.32
737 148 0.23
738 120 0.19
739 1 0.00
740 2 0.00
741 172 0.27
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (740 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCACAAC
CGGCCAGAGGGGCGAGATGCGCAAACCGAGAATCAACCGGGTCCCCCTCTACATGCTACCGATCC
TGCTGTCGCAACCCTCAGTCCAGTCCAATCTTAGAATGGGAATGAACTCCGTATGCCTAAACCAA
TCGACAAAACAGCAGACGGGCGAGCGGGCGGGCACTACCCCGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTGAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
TTTATGGCTTGTAAATTCATAGAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGAGTTTTGAAACTTTTTACGGTTCGAGATTTTTAAAAAATTTTTCG
GAAAGAGTTTTGGCCCCAAACTTGGTGAACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
ACACTTTAACGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCACACATCA
TGTGCTCACGTGCTGGTACTTGGCC
Found at i:4584025 original size:26 final size:26
Alignment explanation
Indices: 4583996--4584047 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
4583986 TGGTCCGATT
4583996 TTAGACTGGGAAAGAACTCCGTATGC
1 TTAGACTGGGAAAGAACTCCGTATGC
*
4584022 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAAAGAACTCCGTATGC
4584048 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (26 bp):
TTAGACTGGGAAAGAACTCCGTATGC
Found at i:4584397 original size:904 final size:901
Alignment explanation
Indices: 4582219--4587615 Score: 6951
Period size: 904 Copynumber: 6.0 Consensus size: 901
4582209 GTACTTGGCC
* * * * * **
4582219 CTTAGACTGGGAATGAACTCCATATGCCTAGGTCAACTCACGAAACGAGCGTGCGGGTGCACAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ** *
4582284 CGGCCAGAGGGGCAGGATGCGCAAACCGAGAATCAATCGGGTCCCCCTCTATGTGCTGTCGAT-T
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCT
* * * * *
4582348 CTGCTGCAGCAACCCTCAGTCCGGTGC-AATCTTAGAATGGGAATGAATTTCGTATGCCTAAGCC
131 -TGCTGCCGCAACCCTCAGTCTGGT-CTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
4582412 AATCGACAAAACGAGCGGGC--G-A-GCGGGCGGGCACTACCCCGGCCAGAGAGACGGGATGCGC
194 AACCGACGAAACGACCGGGCAGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
*
4582473 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* * *
4582538 CATTTTTATGGCTTGTAAATTCATAGAATTGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAA-TGGCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
4582603 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCTGTTCGGGATTTTTAAAAAATTT
388 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT-AAAATTTT
*
4582668 TT-GGAAGGAGTTTTGTCCCCAAACTTGGTAGACATGATCCTTGTATTTTT-TTGGCATGCACAA
452 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
*
4582731 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATT
517 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
4582796 TCAGACACTTTAACGGCTACTGACAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTG
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
4582861 AGTTCTCGAGGTTTGATGAGGGTTAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
647 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * **
4582926 ATCATGTGCGCACACCCCCCCGGCCCCCCTGATCGTCGGAACCCCAAAGCCGCTTGTCAGGTTCT
712 ATCATGTGCGCACACCCCCCCGGCCCCCC-GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * *
4582991 CCGATGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGACACCAGCTCATGCCCGAGCCG
776 CCGATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * ** * * * *
4583056 AGCATGTGCTACTGCAACCCTT-GATCCAGTCCGATTTTAGACAGGCAATGAACTCCATATT
841 AGCATGTGCTACCGCAA-CCTTCGGTCTGGTCCGATCTTAGACTGGCAATGAACTCCGTATG
* * *
4583117 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACCGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** **
4583182 CAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCAGGT-CCCCTCTATGTGCTGTTGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCT
* *
4583246 TGCTGCCACAACCCTCAGTCTGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * ** * * *
4583311 CTGACGAAACAACTGAGCAGGCAGGTGGGTAGGCACTACGCCAGCCAAAGAGACGGGCTGCGCAA
196 CCGACGAAACGACCGGGCAGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
4583376 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCATGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* * *
4583441 TTTTTATGGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTGACGTGAAGTTTCATGGGAAGAC
326 TTTTTATGGCTTGTAAATTCATACAA-TGGCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** *
4583506 GACTCATTTTCTATTTTTCTTGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTAAAAATTTTTT
390 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT-AAAATTTTTT
* * * *
4583571 CAGCAGGAGTTTTGGCCCCAAACTTGGTAAACATGATCCTTGTATTTTTGTTGGCATGCATAAAA
454 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
4583636 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
519 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
4583701 AGACACTTTAATGGCTACTGGCACCAAACCTGTAAAATATCAAATGCTCTTGAAGGGGGTGTGAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
4583766 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATTTAAGGGCCAAGTACCAGCACCCATCGCACAT
649 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
4583831 CATGTGCGCACACCCCCCTCGGCCCCCTCGATCGCCGGAACCCCAATGCTGCCTGTCAGGTTCTC
714 CATGTGCGCACACCCCCC-CGGCCCCC-CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * *
4583896 CGGTGATGCTCCGGCGATGGTGCCCC-AGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGGCC
777 CGATGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * ** * * *
4583960 AGCATGTGCTGCCACAACCTTCAATCTGGTCCGATTTTAGACTGGGAAAGAACTCCGTATG
841 AGCATGTGCTACCGCAACCTTCGGTCTGGTCCGATCTTAGACTGGCAATGAACTCCGTATG
* * * * *
4584021 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACAGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
4584086 CGGCCAGTGGGGCGGGATGCGCAAACCGATGATCGACCGGGTCCCCCTCTGCGTGGTGCCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCT
* * * * * * * *
4584151 TGCTGCCGTAATCCTCAGTTTGTTTTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
4584216 CCGACAAAACGACCGGGCGGGCAGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAA
196 CCGACGAAACGACCGGGCAGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
4584281 GCTGTGTATCGATAGGGTGGTGGGTGGGTTTAGGCACATCTTCATATTTCTACAGGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
4584346 TTTTTATGGCTTGTAAATTCATACAATGGCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
326 TTTTTATGGCTTGTAAATTCATACAATGGCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
4584411 ACTCGTTCTCTATTTTTCACGATTTTTGAACCTTTTTACGGTTCGAGATTTTTTAAAATTTTTTT
391 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTAAAATTTTTTC
* * *
4584476 GGAAAGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
455 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * *
4584541 CATTCAGCTAAAAACTCAAAGTGTAAAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTTA
520 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * *
4584606 TACACTTTAATGGCTACTAGTAGCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGTGTGAGT
585 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
4584671 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
650 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * ** * *
4584736 ATATGCGCACA-CCCCCTGGTCCCTCTGATCAACGGAACCCCAATGCTGCCGGTCAGGTTCTTCG
715 ATGTGCGCACACCCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* ** * * *
4584800 ATGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCTCCAACACATGCTCGAGCCCAGC
779 ATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * ** * * * *
4584865 ATGTGCTGCTGCAACCTTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTTCGTCTG
844 ATGTGCTACCGCAACCTTCGGTCTGGTCCGATCTTAGACTGGCAATGAACTCCGTATG
* * * * **
4584923 TTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACTCACAAAACGAGCGTGCGTACGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
4584988 CGGCCAGAGGGGCGGCATGCGTAAGTCTGA-GATAGGCCGGGTCCCCCTCTGCATGCTGCCGGTC
66 CGGCCAGAGGGGCGGGATGCGCAAG-CCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * ** *
4585052 CTGCTTTCC-CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACT-CGTATGCCTAAGCC
130 TTGC-TGCCGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
4585115 AACCGACGAAACGAGCGGG--TG--GGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGT
194 AACCGACGAAACGACCGGGCAGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
4585176 AAGCCGTGGATCGATACGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* *
4585241 CATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACATGAAGTTTCATGGCAAG
324 CATTTTTATGGCTTGTAAATTCATACAATGG-CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* ** ** *
4585306 ACAACTCGTTACCTATTTTTCAATATTTTCGAAAC-TTTTACGGTTCGGGATTTTTAAAATTTTT
388 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTAAAATTTTT
** * *** * *
4585370 TCTAAAGGATTTTTCAACCCAAACTTGGTCGACATGATCCTTGTATTTTTGTTGGCATGCGCAAA
453 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * * *
4585435 AAAATTTAACTAAAAACTCGAAGTCTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTT
518 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
4585500 CAGACACTTTAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTTAGGGTGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
4585565 GTTCTCGAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * ** * * *
4585630 TCATGTACGAACACCTCCCACGCCCCCCCAATCGCTAGAACCCTAATGCCGTCGATCAGGTTCTC
713 TCATGTGCGCACACC-CCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * *
4585695 CGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGGACAGGCCCGAGCCCA
777 CGATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * *
4585760 GCATGTGCTACCGTAA-CTCTCGGTTTGGT--GATCTTAGACAGGCAATGAACTCTGTATG
842 GCATGTGCTACCGCAACCT-TCGGTCTGGTCCGATCTTAGACTGGCAATGAACTCCGTATG
* * * * * *
4585818 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACTCATGAAACGAGCTTGTGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
4585883 CGACCAAAAGGGCGGGATGTGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCT
* * * * * * *
4585948 TACTACCGCATCCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAAATCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** * * * *
4586013 CCAACCAAATGTGCGGGCAGGCGGGCGGGTGGGTAGGCACTACGTCAGCCAGAGAGACGGGATGC
196 CCGACGAAACGACCGGGCAGGCAGGC-GG-GCG--GGCACTACGCCGGCCAGAGAGACGGGATGC
* * *
4586078 GCAAGCCGTGGATTGACAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCTGCCAAT
257 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
* ** * ** * *
4586143 TCCAACTTCATGGCCAGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGA
322 GCCATTTTTATGGCTTGTAAATTCATACAATGG-CCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * * * *
4586208 AGATGACTCATTTTTTGTTTTTCACGATTTTTGAAATTTTTTACTGTTCGGGATTTTTTAAAATT
386 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTAAAATT
* *
4586273 TTTTCGGAAGGAGTTTTGGCCCCAAACCTGGTAGACATGATCCTTGTATTTTTGTTGGCTTGCAC
450 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAC
* * *
4586338 AAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTATCCCCA
515 AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
4586403 TTTCAAAGACTTTAAT-GCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTG
580 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
4586466 TGAGTTCTCGAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
645 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *
4586531 ACATCATGTACGCACA-CCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTC
710 ACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * *
4586595 TCCGATGATGCTCCTGCGATGGTGCCCCAACGAAGAAAAATACGGCACCAGCACATGCCCAAGCC
775 TCCGATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
*
4586660 CAGCATGTGCTGCCGCAACC--C--TC--G---G-TC-----C--G--AT---CT--G-AT-
840 CAGCATGTGCTACCGCAACCTTCGGTCTGGTCCGATCTTAGACTGGCAATGAACTCCGTATG
* * *
4586696 CTTAGACTGGGAATCAACTCCATATGCCTATGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
4586761 CGGCCAGAAGGGCGAGATGCGCAAGCCGGGGATCGGCCAGGACCCCCTCTGCGTGCTGCCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCT
* * * *
4586826 TACTGTCGCAACCCTC-GATCTGGTCTAATCTTAGACTGGGAATGAACTTCGTATTCCTAAGCCA
131 TGCTGCCGCAACCCTCAG-TCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
4586890 ACCGACGAAACGATCGGGCAGGCAGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGCTACGCA
195 ACCGACGAAACGACCGGGCAGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
4586955 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTACATGCCAACGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* * * * *
4587020 ATTTTTATGGCTTGTAAATTCATACAGTTGTCCCCTAAGCTTTCACGTGAAGTTTCATGGCAAAA
325 ATTTTTATGGCTTGTAAATTCATACA-ATGGCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** *
4587085 TGACTTGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTTGGGATTTTTAAAATTTTTT
389 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTAAAATTTTTT
*
4587150 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATAATCCTTGTATTTTTGTTGGCATGCACAAAA
454 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
4587215 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTC
519 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
4587280 AGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * * *
4587345 TTCTCGAGGTTTGATGAGAGATAGAGGGCCAATATAAGGGTCAAGTACCAGTACCCATCGCATAT
649 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
4587410 CATGTGCGCACACCCCCCCACGCCCCCCAATCGCCAGAACCCCAATGTCGTCGGTCAGGTTCTCC
714 CATGTGCGCACACCCCCCC-GGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * ** * * *
4587475 GACGATGCTCCAGCGATGGTGCGTCGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAA
778 GATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * **
4587540 CATGTGCTATCGCAA-CTCTCGGTCTGATCCGATCTTACTCTGGCAATGAACTCCGTATG
843 CATGTGCTACCGCAACCT-TCGGTCTGGTCCGATCTTAGACTGGCAATGAACTCCGTATG
4587599 CTTAGACTGGGAATGAA
1 CTTAGACTGGGAATGAA
4587616 ACCAGCACCC
Statistics
Matches: 3896, Mismatches: 534, Indels: 133
0.85 0.12 0.03
Matches are distributed among these distances:
873 147 0.04
874 219 0.06
875 82 0.02
876 9 0.00
877 110 0.03
878 184 0.05
879 3 0.00
880 1 0.00
881 2 0.00
882 2 0.00
885 2 0.00
886 1 0.00
887 3 0.00
889 1 0.00
892 1 0.00
894 8 0.00
895 162 0.04
896 288 0.07
897 333 0.09
898 158 0.04
899 4 0.00
900 5 0.00
901 252 0.06
902 436 0.11
903 254 0.07
904 822 0.21
905 270 0.07
906 137 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (901 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCT
TGCTGCCGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGACCGGGCAGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTAAAATTTTTTCG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAT
GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTACCGCAACCTTCGGTCTGGTCCGATCTTAGACTGGCAATGAACTCCGTATG
Found at i:4585832 original size:26 final size:26
Alignment explanation
Indices: 4585792--4585844 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
4585782 GTTTGGTGAT
4585792 CTTAGACAGGCAATGAAC-TCTGTATG
1 CTTAGACAGGCAATGAACTTC-GTATG
* *
4585818 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACAGGCAATGAACTTCGTATG
4585844 C
1 C
4585845 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACAGGCAATGAACTTCGTATG
Found at i:4587708 original size:26 final size:26
Alignment explanation
Indices: 4587672--4587724 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4587662 GTTGACTTAG
*
4587672 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4587698 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4587724 G
1 G
4587725 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4587924 original size:13 final size:12
Alignment explanation
Indices: 4587889--4587920 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
4587879 GTGCTGGTAC
*
4587889 TTGGCCCTTATA
1 TTGGCCCCTATA
4587901 TTGGCCCCTATA
1 TTGGCCCCTATA
4587913 TTGGCCCC
1 TTGGCCCC
4587921 CTATCCCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.34, G:0.19, T:0.34
Consensus pattern (12 bp):
TTGGCCCCTATA
Found at i:4588593 original size:26 final size:26
Alignment explanation
Indices: 4588564--4588616 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4588554 GTTGACTTAG
*
4588564 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4588590 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4588616 G
1 G
4588617 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4589002 original size:88 final size:88
Alignment explanation
Indices: 4588853--4589040 Score: 322
Period size: 88 Copynumber: 2.1 Consensus size: 88
4588843 TTAAAGAGCA
*
4588853 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
1 TTTGAGTTTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
*
4588918 AATGGTCACAAAATCTTGTACAC
66 AATGGTCACAAAATCTTGCACAC
* *
4588941 TTTGAGTTTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAAATGGGGACACTTTTTTGA
1 TTTGAGTTTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
4589006 AATGGTCACAAAATCTTGCACAC
66 AATGGTCACAAAATCTTGCACAC
**
4589029 TTCAAGTTTTTA
1 TTTGAGTTTTTA
4589041 GCTGAATTTT
Statistics
Matches: 94, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 94 1.00
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.36
Consensus pattern (88 bp):
TTTGAGTTTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCTTGCACAC
Found at i:4591460 original size:26 final size:26
Alignment explanation
Indices: 4591431--4591483 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4591421 CCGGTCTGAT
4591431 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4591457 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4591483 C
1 C
4591484 GTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4592044 original size:900 final size:897
Alignment explanation
Indices: 4589842--4593251 Score: 4545
Period size: 900 Copynumber: 3.8 Consensus size: 897
4589832 AGTTAGCCAC
* * * *
4589842 GGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGTGGGCGGGC-G-GGCGGGCACTACG
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGAGGCGGGCACTACG
* * * * *
4589905 CCGACCAGAAAGGCAGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATC
66 -CGACCAGAGAGACAGGATGCGCAAGCCGCGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
4589970 TTCATATTTCTGCGTGGCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
130 TTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * *
4590035 CTCACGTGAAGTTTCATGGCGAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
195 TTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
* * * *
4590100 GCTTCGAGATTTTTTTAAAATTTTTTTGGAAGCAGTTTAGCCCCAAACTTGGTAGAC--G-----
260 GGTTCGAGA-TTTTTTAAAATTTTTTTCGAAGGAGTTTGGCCCCAAACTTGGTAGACGTGATCCT
* *
4590158 TG-------A-T----TGCACAAAAAGATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
324 TGTATTTTTATTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
4590211 CATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCT
389 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* **
4590276 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGG
454 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAAGGCCAATATAAGGG
* * *
4590341 CCAAGTACCAGCACCCATCGAACATCATGTGCGCAAACCCCTCCGGCCCCCCGATCGTCAGAACC
519 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCCCCCGATCGTCGGAACC
* * ** ** *
4590406 CCAATGCCGCCGGTCAAGTTCTCTGACGATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATACG
583 CCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCG
* * * * * *
4590471 GCACCAGTAGATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTAATCTTGGACG
648 GCACCAGCACATGCCCAAGCCGAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACT
* *
4590536 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACA
713 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
* * *
4590601 AGCGTGCGGGCGCTCAGCCGGCCAGAGGCGTGGGATGCGCAAGCCCGAGGATCGGCCGGGTCCCC
778 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CCGAGGATCGACCGGGTCCCC
* * * *** * * *
4590666 CTCTGCGTGTTGTCAATCCTGCTATTGTAACCCTTGATCCGGTCTGATCATAGATTG
842 CTCTGCGTGCTGCCGATCCTGCTACCATAACCCTCG-TCCGGTCTGATCTTAGACTG
* * * * * * *
4590723 GGAATGAACTCCGTATGCCTAAGCCAATCAACGAAACGAGCGGGTGGGCGGGCGGGTGGGCTCTA
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGC-GG-AGGCGGGCACTA
* * ** * *
4590788 TGTCGACCAAAGAGACAGGATGCGCAAGATGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACA
64 CG-CGACCAGAGAGACAGGATGCGCAAGCCGCGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * *
4590853 TCTTCATTTTTCTGCATGCCAATGCCATTTTTATCGCTTGTAAATTCATACAATGGTCCCTTAAG
128 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* *
4590918 CCTTCACGTGAATTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
193 CCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTT
** * * *
4590983 GTGGTTCGAGATTTTTTAAAA-TTTTTTCGGAAGGTGTTTTGGCCCCAAACATGGTAGATGTGAT
258 ACGGTTCGAGATTTTTTAAAATTTTTTTC-GAAGGAG-TTTGGCCCCAAACTTGGTAGACGTGAT
4591047 CCTTGTACTTTTT-TTGGCATGCACAAAAAAATTCAA-CTAAAAACTCGAAGTGTACAAGATTTT
321 CCTTGTA-TTTTTATTGGCATGCACAAAAAAATT-AAGCTAAAAACTCGAAGTGTACAAGATTTT
* * *
4591110 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTGAATGGCTACTGGCAACAAACCTGCAA
384 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
4591175 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTT-AGTGAGGGATACAAGGCCAATA
449 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA-TGAGGGATAGAAGGCCAATA
* * * *
4591239 TAAGGGCCAACTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATTGCC
513 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTC
* *
4591304 GGAACCCCAATGCCGCCGGTCAGGTTCTCCTACGATGCTCCGACGATGGTGCCCCGACAAAGAAA
577 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAA
* * * * *
4591369 AATGTGGCACCAGCACATGCCCAAGCC-AGGATGTGCTACCGTAACCCTCGGTCCGGTCTGATCT
642 AATGCGGCACCAGCACATGCCCAAGCCGAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCT
* *
4591433 TAGACTGGGAATGAACTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCGTAAGTCAACCCAT
707 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAT
* * * * *
4591498 GAAATGAGCGTGCGGGCACTCAGCCAGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGACCGGG
772 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGG
* * * * *
4591563 TCCCCTTCTGTGTGCTACCGATCTTACTACCATAACCCTCGTCCGGTCTGATCTTAGACTG
837 TCCCCCTCTGCGTGCTGCCGATCCTGCTACCATAACCCTCGTCCGGTCTGATCTTAGACTG
* *
4591624 GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGAGCGGGCGGATTTGCGGGCACTA
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGA--GGCGGGCACTA
** * *
4591689 CGTC-AGCCAGAGAGATGGGATGCGCATGCCGCGGATCGATATGGTGGTAGGTGGGTTTAGGCAC
64 CG-CGA-CCAGAGAGACAGGATGCGCAAGCCGCGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
4591753 ATCTTCATATTTCTGTGTGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATTGTCCCTTAA
127 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
4591817 GCCTTCACGTGAAGTTTCATAGCAAGACGACTCATTTTTTATTTTTCATGATTTTTGAAACTTTT
192 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTT
* * * * *
4591882 TACGGTTTGGGATTTTTGAAAATTTTTTTCGAAGGAGTTTTGGCCCCGAGCTTGGTAGACGTGAT
257 TACGGTTCGAGATTTTTTAAAATTTTTTTCGAAGGAG-TTTGGCCCCAAACTTGGTAGACGTGAT
*
4591947 CCTTGTATTTTTATTGGCATGCACAAAAAAATTAAGCTAAAAACTCGACGTGTACAAGATTTTGT
321 CCTTGTATTTTTATTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTGTACAAGATTTTGT
4592012 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
386 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
4592077 TCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTCCAGGTTTGATGAGGGATA-AGAGGCCAACATA
451 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGA-AGGCCAATATA
* * * *
4592141 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAGACCCTCTGCCCCCCGATCGTCGA
515 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGTCGG
* * **
4592206 AACCCTAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
579 AACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
* * * * *
4592271 TGCGGCACCAGCACAAGCCCGAGCCGAGCATGTGCTGCCGCAGCCCTCGGTCGGGTCCGATCTTA
644 TGCGGCACCAGCACATGCCCAAGCCGAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTA
* * * * *
4592336 GACTAGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCATGG
709 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
* * * * * * * *
4592401 AACGAGCGTGCAGGCGCTTAGTCGGCCAGAAGGGCGGGATGCGGAAGCTGTGGATCAACCGGGTC
774 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTC
* * * * * * **
4592466 CCCCTCTGCATGCTGCCGATCGTGCTGCCACAACGCTCGGTCTGGTCCAATCTTAGACTG
839 CCCCTCTGCGTGCTGCCGATCCTGCTACCATAACCCTC-GTCCGGTCTGATCTTAGACTG
*
4592526 GGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CGAGCGGGC--AGGCAGGCACTACG
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGAGGCGGGCACTACG
* * * * * * * *
4592585 CTGGCTAGAGAGACGGGATGCGCAAGCAGCAGATCAATAGGCTGGTAGGTGGGTTTAGGCACACC
66 C-GACCAGAGAGACAGGATGCGCAAGCCGCGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
** * *
4592650 TTCATATTTCTATGTGCCAATGCCATTTTTTTGGCATGTAAATTCATACAATGGTCCCTTAAGCC
130 TTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* **
4592715 TTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTAC
195 TTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
* * * * *
4592780 GGTTTGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTGGCCCCGAGCTTGGTAGACATGATCCTT
260 GGTTCGAGATTTTTTAAAATTTTTTTCGAAGGAGTTTGGCCCCAAACTTGGTAGACGTGATCCTT
**
4592845 GTATTTTTATTGGCATGCATGAAAAAATTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
325 GTATTTTTATTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* * *
4592910 ATTTCAAAAAAGTGTCCCCATTTAAGACACTTCAATGGCTACTGGCAGCAAACCTGTAAAATCTC
390 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * **
4592975 AAATGCACTTTAA-GAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
455 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAAGGCCAATATAAGGGC
* **
4593039 CAAGTACCAGCACCCATCGCATATCATGTTTGCACACCCCCCGGCCCCCCCGATCGTCGGAACCC
520 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCC
* * * *
4593104 CAATGCCGTCGGTTAGGTTCACCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGG
584 CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGG
* * *
4593169 CACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGTAACCCTCGGTCTGGT-TCGATCTTAGACT
649 CACCAGCACATGCCCAAGCCGAGCATGTGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACT
*
4593233 GGGAATGAACTTCGTATGC
713 GGGAATGAACTCCGTATGC
4593252 CTAAGCCAAC
Statistics
Matches: 2226, Mismatches: 257, Indels: 80
0.87 0.10 0.03
Matches are distributed among these distances:
881 43 0.02
883 7 0.00
884 15 0.01
885 214 0.10
887 1 0.00
892 7 0.00
893 230 0.10
894 253 0.11
895 127 0.06
896 1 0.00
898 9 0.00
899 9 0.00
900 451 0.20
901 336 0.15
902 93 0.04
903 139 0.06
904 290 0.13
905 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGAGGCGGGCACTACG
CGACCAGAGAGACAGGATGCGCAAGCCGCGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
TCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
GTTCGAGATTTTTTAAAATTTTTTTCGAAGGAGTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
TATTTTTATTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAAGGCCAATATAAGGGCC
AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCA
ATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCA
CCAGCACATGCCCAAGCCGAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCT
GCGTGCTGCCGATCCTGCTACCATAACCCTCGTCCGGTCTGATCTTAGACTG
Found at i:4592370 original size:26 final size:26
Alignment explanation
Indices: 4592332--4592387 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
4592322 CGGGTCCGAT
*
4592332 CTTAGACTAGGAATGAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
4592358 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
4592384 CTTA
1 CTTA
4592388 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:4595412 original size:895 final size:893
Alignment explanation
Indices: 4593196--4597687 Score: 5498
Period size: 895 Copynumber: 5.1 Consensus size: 893
4593186 GCCTAGCATG
* * * * *
4593196 TGCTGCCGTAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
4593261 CGGACGAAATGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATACGCAA
66 CCGACGAAACGAG-GGGC-GGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * * *
4593326 GCCGTTGATCGATAGGGTGGTCGGTGGGTTTAGGAACATCTTCATATTTCTACGTGCCAATACCA
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * * * *
4593391 TTTTTATTGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAT
194 TTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** ** *
4593456 GACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTT
259 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTT
* * * *
4593521 CGGAAGGAGTTTTGGCCCCAAACTTGGCAGACATGATTCTTGTATTTTT-TTTGCATGTACAAAA
324 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG--CAAAA
*
4593585 CAAA-TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
387 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
4593649 TAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
452 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
4593714 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
517 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
** * ** * *
4593779 TCATGTATGTACACCCCGCCCGGCCCCCCCGATCATCAGAACCCCAATGGCGTCGGTCAGGTTCT
582 TCATGTGCGCACA-CCC-CCCGGCCCCCCCGATCGCCA-AACCCCAATGCCGTCGATCAGGTTCT
* * *
4593844 CCGGCGATGCTTCGACAATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
644 CCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
* * ** * * *
4593909 AGCATGTGCTGCCGTAACCCTTGGCCCGATCCTATCTTTGACTGGGGATGAACTCCGTATGCTT-
709 AGCATGTGCTGCCGCAACCCTCGATCCG-TTCGA-C--TGAGT-GGGATG-ACTCCGTATGCTTA
* * * * **
4593973 GACTAGTAATGAACT-C---TG--T--G--AA---AC--AA-G-CT-TGAGGGCGCTCAGCCAAC
768 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGC
* *
4594020 CAGAGGGGCGGGATGCGTAAGCCGGGGATCGA-CTGGGTCCCCCTCTGTGTGCTACCAATCC
833 CAGAGGGGCGGGATGCGTAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTACCGATCC
* * * *
4594081 TGCTACCGTAACCCTCGGTCCGGTCCAATCTTAGATTGAGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
* * *
4594146 CCGACGAAACGA---GCGGA---CGGGCGGGCACTACGCCGGCTAGAGAGGCGGGATGCGCATGC
66 CCGACGAAACGAGGGGCGGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* *
4594205 CGTGGATCGATTGGGTGGTAGGT-GGTTTAGGCACATCCTCATATTTCTGCATGCCAATGCCATT
131 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
4594269 TTTATGGCTTGTAAATTCATAG-AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
196 TTTATGGCTTGTAAATTCAT-GCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * *
4594333 ACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAATATTTTTTT
260 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAA-AATTTTTT
* * * * * * *
4594398 TGGATGGAGATTTGCCCCCAAACTTAGTAGAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
324 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAA
* * *
4594463 AAATTCAGCTAAAAACTCGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTC
388 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
4594528 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
453 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* **
4594593 TTCTCAAGGTTTGACAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
518 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
4594658 CATGTGCGCACACCCACCCGGCCCCCCCGATCGCCGAAACCCCAATGCCG-CGATCAGGTTCTCC
583 CATGTGCGCACACCC-CCCGGCCCCCCCGATCGCC-AAACCCCAATGCCGTCGATCAGGTTCTCC
** *
4594722 GACGATGCTCCGACGATGGTGCCCCGACGAAG-AAAATGTGGCACCAGCACATGCCCAAGCCCAG
646 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
* *
4594786 CATGTGCTGCTGCAACCCTCGATCCAGTTCGA-TGAGTGTGATG-CTCCGTATGCTTAGACTGGG
711 CATGTGCTGCCGCAACCCTCGATCC-GTTCGACTGAGTGGGATGACTCCGTATGCTTAGACTGGG
* * * * *
4594849 AATGAACTCCATGTGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCACTCAGCTGGCCAGAGGG
775 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGG
* * ** * **
4594914 GCGGGATGCGCAAGTCGGGGATCGATCGGGTCCTGCTCTGCATGCTGTCGATCC
840 GCGGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * * * *
4594968 TGCTACCACCATCGTCAGTCTGGTCCAATCTTAGACTGAGAATGAACTCCATATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
* *
4595033 CCGACGAAACGAGTGGGCGGGAGGGCGGGCGGGCACTACGCCGGCAAGAGAGGCGGGATGCGCAA
66 CCGACGAAACGAG-GGGC-GGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
4595098 GCCGTGGCTCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTGCATTCCAATGCCA
129 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
4595163 TTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGTCTTCAGGTGTAGTTTCATGGCAAGAC
194 TTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
4595228 GACTCGTTTTCTATTTTTCATGATTTTTGAAAGTTTTTGCGGTTCAGGATTTTTTAAAATTTTTT
259 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTT
* * *
4595293 CAGAGGGAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAA
324 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAA
* *
4595358 CAATTCAACTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
389 -AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
*
4595423 AGACACTTTAATGGCTACTGGCAGCAAGCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
453 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
4595488 TTCAT-GAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
518 TTC-TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* ** * * *
4595552 TCATGTTCGCACACCCCCCGGCCCCTTCGATCGCCAGAACCCCAATGCCATCGGTCAGGTACTCC
582 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCA-AACCCCAATGCCGTCGATCAGGTTCTCC
* * * ** *
4595617 GACGATGCTCCGATGATGGTGCCTCGACGAAGAAAAGTTTGGCGCCAGCACAT-CCACGAGCCCA
646 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCC-CGAGCCCA
4595681 GCATGTGCTGCCGCAACCCTCG----G-T---C----T--G--G--TCCG-AT-CTTAGACTGGG
710 GCATGTGCTGCCGCAACCCTCGATCCGTTCGACTGAGTGGGATGACTCCGTATGCTTAGACTGGG
* * ** *
4595726 AATGAATTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTTGGGCGCTCAACCGGCCAGAGGG
775 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGG
* ** * * * *
4595791 GCGGGATTCAAAAGCCAGGGATCGGTTGGGTCACCCTCTGCGTGCT---G-T-C
840 GCGGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
* * *
4595840 -G-T-----AACCCTCGGTCTGGTCTGATCTTGGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
* *
4595898 CCGACG-AA--A----C-GA--GCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
66 CCGACGAAACGAGGGGCGGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * **
4595953 CGTGAATCGATAGGTTGGTAGGTGGCTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATT
131 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
4596018 TTTATGGCTTGTAAATTCATTCAATGGTCCCTTAAGCCTTCACATGAAGTTTTATGGCAAGACGA
196 TTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * ** *
4596083 CTCATTTTCTATTTTTTATGATTTTCAAAAATTTTTGCGGTTC-GAGATTTTTTAAAATTTTTTC
261 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAG-GATTTTTTAAAATTTTTTC
* * *
4596147 GGAAGGAGTTTTGGCCCCAAACTTGGTAGATGT-ATCCTTGTACTTTTGTTGGCATGCATAAAAA
325 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAA
* *
4596211 AGTCAGCTAAAAACTCGTAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
390 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
* *
4596276 ACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTT
455 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
4596341 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAACAGAACCCATCACACATCA
520 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* *
4596406 TGTGCGCATACCCCCCCGG------C---C-CC---CCCCAATGCCGTCTG-TCAGGTACTCCGA
585 TGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCAAACCCCAATGCCGTC-GATCAGGTTCTCCGA
* * * * * * *
4596457 CGATGCTCCGACAATGGTGCACCAACGAAGAAAAATGCGACACTAGCACATGCCTGAGCCCAGCA
648 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
* * * * *
4596522 TGTGCTGCCGCAACACTCGGTCCGGTCCGATCTTAGTCTGGGAATGAACTCCGTATGCTTAGACA
713 TGTGCTGCCGCAACCCTCGATCC-GTTCGA-CTGAG--TGGG-ATG-ACTCCGTATGCTTAGACT
* * *
4596587 GGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGATCAGCCGGCCAGA
772 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGA
** * *
4596652 GGGGTAGGATGCATAAGCCAGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
837 GGGGCGGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * ** * * *
4596709 TGCTGCTGCAACCTTTGGTCCAGTTCGATCTTAGACT-AGGAATGAACTCCATATGCCTATGCCA
1 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGA-GAATGAACTCCGTATGCCTAAGCCA
* * **
4596773 ACCGACGAAACAAGCGGGCGGGTGGGCGGGCGGGCACTATACCGGCCAGAGAGACGGGATGCGCA
65 ACCGACGAAACGAG-GGGC-GGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
4596838 AGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTCA-ATTTCTGCTTGCCAATGCC
128 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
4596902 ATTTTTATGGCTTGTACATTCATAG-AATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAG
193 ATTTTTATGGCTTGTAAATTCAT-GCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
4596966 ATGACTCGTTTTCTATTTTACATGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTAT
257 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTT
* *
4597031 TTCGGAAGGAGTTTTGGCCCCAAACTTTGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
322 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AA
* *
4597096 AAAAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGATAAAAGTGTCCCCATT
386 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
4597161 TCAGATACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTG
451 TTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
4597226 AGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCAC
516 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** * *
4597291 ATCATGTGCGC-CACCCCCCCGAACCCCCGA-CCCCGAAACCCTAATGCCGTCGATCAGGTTCTC
581 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCC-AAACCCCAATGCCGTCGATCAGGTTCTC
* *
4597354 C-AGTGAAGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
645 CGA-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
* *
4597418 AGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTA
709 AGCATGTGCTGCCGCAACCCTCGATCCGTTC-GA-C-T-GAGTGGG-ATG-ACTCCGTATGCTTA
* * * * * *
4597483 GACTGGGAAATGAACTCTGTGTGCTTAAGTCAACCTATGAAACGA-TCGTGCGGGCGCTCAGTCG
768 GACTGGG-AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGT-GTGCGGGCGCTCAGCCG
* * * * * * *
4597547 GCTAGAGGGGCGAGATGCGTAAGTCGGTGATCG-GCTGGGTCCCCCTCTACATGCTACCGATCC
831 GCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTACCGATCC
* * * * * * *
4597610 TACTGCCGCAACCCTCAGTCGGGTCTGATATTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
4597675 CCGACGAAACGAG
66 CCGACGAAACGAG
4597688 TGTCCCCATT
Statistics
Matches: 3124, Mismatches: 357, Indels: 236
0.84 0.10 0.06
Matches are distributed among these distances:
838 93 0.03
839 3 0.00
842 2 0.00
843 2 0.00
846 1 0.00
848 1 0.00
850 1 0.00
851 191 0.06
852 37 0.01
853 241 0.08
854 1 0.00
855 2 0.00
856 1 0.00
857 1 0.00
859 1 0.00
862 5 0.00
863 2 0.00
864 110 0.04
865 53 0.02
867 1 0.00
868 13 0.00
869 14 0.00
870 8 0.00
871 6 0.00
872 1 0.00
873 3 0.00
874 1 0.00
875 53 0.02
876 241 0.08
877 248 0.08
878 203 0.06
879 7 0.00
880 3 0.00
881 2 0.00
882 3 0.00
884 4 0.00
885 69 0.02
886 2 0.00
887 301 0.10
888 103 0.03
889 192 0.06
890 1 0.00
891 3 0.00
892 3 0.00
893 2 0.00
894 34 0.01
895 361 0.12
896 196 0.06
899 4 0.00
900 132 0.04
901 161 0.05
902 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGGGGCGGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCGGCCCCCCCGATCGCCAAACCCCAATGCCGTCGATCAGGTTCTCCGACGA
TGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
GCTGCCGCAACCCTCGATCCGTTCGACTGAGTGGGATGACTCCGTATGCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
TGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
Found at i:4597482 original size:26 final size:27
Alignment explanation
Indices: 4597453--4597509 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
4597443 CCGGTCTGAT
4597453 CTTAGACTGGG-AATGAACTCCGTATG
1 CTTAGACTGGGAAATGAACTCCGTATG
* *
4597479 CTTAGACTGGGAAATGAACTCTGTGTG
1 CTTAGACTGGGAAATGAACTCCGTATG
4597506 CTTA
1 CTTA
4597510 AGTCAACCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
26 11 0.39
27 17 0.61
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (27 bp):
CTTAGACTGGGAAATGAACTCCGTATG
Found at i:4599808 original size:902 final size:902
Alignment explanation
Indices: 4597993--4601089 Score: 3100
Period size: 979 Copynumber: 3.3 Consensus size: 902
4597983 TAGCCCATGG
* * * * * *
4597993 AACGAGCGTGCGGGTGCTCAGCTGGCCAAAGGGGCGAGATGCGCAAGCTAGGGATCAACCGGGCC
1 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCAACCGGGTC
* * * * * ** *
4598058 CCCCTCTACATGCTGCCAATCTTGCTGTCGTAACCCT-TGATCTGGTCTGATCTTAGACTGGGAA
66 CCCCTCTACGTGCT-ACGATCTTGCTGTCGCAACCCTCAG-TCCAGTCAGATCTTAGACTGGGAA
* * * **
4598122 TGAACTCCGTATGCCTAAGCCAATCGAC-GA-AA-TGAGTGGGCGGGCGGGCGAGCACTACGCCG
129 TGAACTCCGTATGCCTAAGCCAATCGACAAACAACGGAGTGGGCGGGCGGGCGGGCACTACGTTG
* * * *
4598184 GCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCATATCTTC
194 GCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTAGGTTTAGGCACATCTTC
* ** *
4598249 ATATTTGTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATTATCCGTTAAGCCTTC
259 ATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
4598314 ACGTGAAGTTTCATGGCAAGACAACTCGTTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGG
324 ACGTGAAGTTTCATGGCAAGACAACTCGTTTTTCTATTTTTCATGATTTTCGAAACTTTTTAGGG
* * * * *
4598379 TTTGGGATTTTTTAAAATTTTTTCAGATGCATTTTTGACCCCAAACTTGGTAGACATGATTCTTG
389 TTCGGGATTTTTTAAAATTTTTTCAGAAGCAGTTTTGACCCCAAACTAGGTAGACATGATCCTTG
*
4598444 TATTTTTATTGGCATGCAAAAAAAAATTCAGCTAAAAAATCAAAGTGTAAAAGATTTTCTGTCCA
454 TATTTTTATTGGCATGCAAAAAAAAATTCAGCTAAAAAATCAAAGTGTAAAAGATTTTCTGACCA
*
4598509 TTTGAAAAAAGCATCCAAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCACA
519 TTTGAAAAAAACATCCAAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCACA
* * * *
4598574 AATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATTAGGGATAGGGGGCCAATATAAGGGCT
584 AATGCCCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCC
*
4598639 AAGTACCAGCACCCATCGCACATCATGTACGCACACACCCCCCAGCTCCCCCGATCGCCAAAACC
649 AAGAACCAGCACCCATCGCACATCATGTA-G-ACACACCCCCCAGCTCCCCCGATCGCCAAAACC
* * * *
4598704 CCAATGCCACCGGTCAGGTTCTTCGGCGATGCTCCGGTGATGGAGCCTCGACGAAGAAAAATGCG
712 CCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGAGCCTCGACAAAGAAAAATGCG
* * *
4598769 GCACCAGCACATGCCCGAGCCCAGCACGTGCTGCCGCAACCCTCAGTTTGGTCCAATCTTAGATT
777 GCACCAGCACATGCCCGACCCCAGCACGTGCTACCGCAACCCTCAGTTTGGTACAATCTTAGATT
** ** *
4598834 GGGAATGAACTCTGTAAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAA
842 GGGAATGAACTCCATAAGCTTAGACCAGGAACGAACTCCGTATGCCTAAGTCAACCCACAA
* * ***
4598895 AACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCGGGATGTGCAAGCCAGGGATCGGTCGGGTC
1 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCAACCGGGTC
* *
4598960 CCCCTCTACGTGCTACGATCCTGCTGTCGCAACCCTCAGTCCAGTCAGATCTTAGACTGTGAATG
66 CCCCTCTACGTGCTACGATCTTGCTGTCGCAACCCTCAGTCCAGTCAGATCTTAGACTGGGAATG
* * *
4599025 AACTCCGTATGCCTAAGCCAACCGACAAAACAAGCGAGAGGGCGGACGGGCAGGCGGGCACTACG
131 AACTCCGTATGCCTAAGCCAATCGAC-AAACAA-CG-GAGTG-GG-CGGGCGGGCGGGCACTACG
* * *
4599090 TTGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAAGGTGGTTGGTGGGTTTACGCACATC
191 TTGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTAGGTTTAGGCACATC
* *
4599155 TTCATATTTCTGTGTGCCAATGCCATTTTTGTGGCTTGTGAATTCATACAATGGTCCCTTAAGCC
256 TTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * *
4599220 TTCATGTGAAGTTTCATGGCAAGACGACTCG-TTTTCTATTTTTCATGATTTTCGAAACTTTTTG
321 TTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTTCTATTTTTCATGATTTTCGAAACTTTTTA
* * *
4599284 GGGTTCGGGATTTTTTAAAA-TTTTTC-GAAAGGAGTTTTGGCCTCAAACTAGGTAGACATGATC
386 GGGTTCGGGATTTTTTAAAATTTTTTCAG-AAGCAGTTTTGACCCCAAACTAGGTAGACATGATC
* * * * * ** * *
4599347 CTTGTATTTTTGTTGGCATGCACAAAAGAATTCAGGTAAAAACTTGAAGTGTACAAGATTTTGTG
450 CTTGTATTTTTATTGGCATGCAAAAAAAAATTCAGCTAAAAAATCAAAGTGTAAAAGATTTTCTG
** *** * * *
4599412 ACCATTTGAAAAAAATGTCTTCATTTTAGACATTTTAATGGCTACTGGCAGCAAACTTGTAAAAT
515 ACCATTTGAAAAAAACATCCAAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
**
4599477 CTGAAATGCCCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAG
580 CACAAATGCCCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAG
* * * * *
4599542 GTCCAAGAACCAGCACCCATCGCACATCATGT-G-CGCACCCCCCGGC-CCCTCGATCGCCGAAA
645 GGCCAAGAACCAGCACCCATCGCACATCATGTAGACACACCCCCCAGCTCCCCCGATCGCCAAAA
** * * **
4599604 CCCCAATGCCGTCGGTCAGTTTCTCCGACGATGCTCCGGCGATGGTGCCTCGGTAAAGAAAAATG
710 CCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGAGCCTCGACAAAGAAAAATG
* * *
4599669 TGGCACCAGCACATGCCCGACCCCAGCATGTGCTACCGCAACCCTC-GATTTGGTACAATCTTAT
775 CGGCACCAGCACATGCCCGACCCCAGCACGTGCTACCGCAACCCTCAG-TTTGGTACAATCTTAG
** * *
4599733 ATTGGGAATGAACTCCATATTCTTAGACCAGGAACGAACTCTGTATGCCTAAGTCAACCCACGA
839 ATTGGGAATGAACTCCATAAGCTTAGACCAGGAACGAACTCCGTATGCCTAAGTCAACCCACAA
* * * *
4599797 AACGGGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCAACCGGGTC
1 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCAACCGGGTC
* * * * * * *
4599862 CCCCTCAACGTGCTGCTGATCTTGCTGCCACAATCCTCAGTTCAGTCTA-ATCTTTGACTGGGAA
66 CCCCTCTACGTGCTAC-GATCTTGCTGTCGCAACCCTCAGTCCAGTC-AGATCTTAGACTGGGAA
*
4599926 TGAACTTCGTATGCCTAAGCCAATCGACGAAACGAACGGA-TGGGCGGGCGGGCGGGCACTACGT
129 TGAACTCCGTATGCCTAAGCCAATCGAC-AAAC-AACGGAGTGGGCGGGCGGGCGGGCACTACGT
** *
4599990 CT-GCCAGAGAGATAAGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTTGGTTTAGGCACATC
192 -TGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTAGGTTTAGGCACATC
** * * *
4600054 TTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCATTTTTAT
256 TTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC---CTTAA
* * *** * * * *
4600119 G-GTTTA-G-GCACA-TCTTCATATTTGTGTGTGCCAA-TGCCATTTTTATGGCTTCTAAATTCA
318 GCCTTCACGTG-A-AGT-TTC--A--TG-GCAAGACAACT--CGTTTTTCT--ATT-T---TTCA
* * * * * * **
4600179 TACAATGGTCCGTTAAGC-CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
367 T--GAT-TTTCG--AAACTTTTTA-G-G--G-TTC---G---G--GA-T--TTTT-TA----AAA
* * ** **** * *
4600243 TGATTTTC-GAAACTTTTTGGGGTTCGGGATTTTTTAAAATTTTTTGAAAGAAGTTTTGGCCTCA
406 T-TTTTTCAGAAGC-AGTT----TT---GA---CCCCAAA--CTA-------------GG--T--
* * * * * **
4600307 AACTAGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAGAATTCAGGTAAAAACTTGA
440 -A-------GACATGATCCTTGTATTTTTATTGGCATGCAAAAAAAAATTCAGCTAAAAAATCAA
* * *** *** * *
4600372 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTTCATTTTAGACATTTTAATGGCTACTG
497 AGTGTAAAAGATTTTCTGACCATTTGAAAAAAACATCCAAATTTCAGACACTTTAATGGCTACTG
* ** *
4600437 GCAGCAAACTTGTAAAATCTGAAATGCCCTTTAAGGGGGTATGAGTTCTCAAGGTTTGATGAGGG
562 GCAGCAAACCTGTAAAATCACAAATGCCCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
* * *
4600502 ATAGAGGGCCAATATAAGGTCCAAGAACCAGCACCCATCGCACATCATGT-G-CGCACCCCCCGG
627 ATAGAGGGCCAATATAAGGGCCAAGAACCAGCACCCATCGCACATCATGTAGACACACCCCCCAG
* * ** * *
4600565 C-CCCTCTGATCGCCGAAACCCCAATGCCGTCGGTCAGTTTCTCCGACGATGCTCCGGCGATGGT
692 CTCCC-CCGATCGCCAAAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGA
** * *
4600629 GCCTCGGTAAAGAAAAATGTGGCACCAGCACATGCCCGACCCCAGCATGTGCTACCGCAACCCTC
756 GCCTCGACAAAGAAAAATGCGGCACCAGCACATGCCCGACCCCAGCACGTGCTACCGCAACCCTC
* ** *
4600694 -GATTTGGTACAATCTTATATTGGGAATGAACTCCATATTCTTAGACCAGGAACGAACTCTGTAT
821 AG-TTTGGTACAATCTTAGATTGGGAATGAACTCCATAAGCTTAGACCAGGAACGAACTCCGTAT
*
4600758 GCCTAAGTCAACCCACGA
885 GCCTAAGTCAACCCACAA
* * * *
4600776 AACGGGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCAACCGGGTC
1 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCAACCGGGTC
* * * * * * *
4600841 CCCCTCAACGTGCTGCTGATCTTGCTGCCACAATCCTCAGTTCAGTCTA-ATCTTTGACTGGGAA
66 CCCCTCTACGTGCTAC-GATCTTGCTGTCGCAACCCTCAGTCCAGTC-AGATCTTAGACTGGGAA
*
4600905 TGAACTTCGTATGCCTAAGCCAATCGACGAAACGAACGGA-TGGGCGGGCGGGCGGGCACTACGT
129 TGAACTCCGTATGCCTAAGCCAATCGAC-AAAC-AACGGAGTGGGCGGGCGGGCGGGCACTACGT
** *
4600969 CT-GCCAGAGAGATAAGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTTGGTTTAGGCACATC
192 -TGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTAGGTTTAGGCACATC
** *
4601033 TTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCC
256 TTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
4601090 ATTTTTATGG
Statistics
Matches: 1913, Mismatches: 180, Indels: 127
0.86 0.08 0.06
Matches are distributed among these distances:
899 129 0.07
900 6 0.00
901 74 0.04
902 324 0.17
903 83 0.04
904 5 0.00
905 4 0.00
906 5 0.00
907 239 0.12
908 56 0.03
909 161 0.08
910 2 0.00
911 1 0.00
914 5 0.00
916 2 0.00
917 3 0.00
918 2 0.00
919 4 0.00
920 1 0.00
922 1 0.00
923 3 0.00
926 1 0.00
929 1 0.00
931 2 0.00
932 1 0.00
934 4 0.00
935 2 0.00
939 1 0.00
940 2 0.00
941 8 0.00
945 2 0.00
948 1 0.00
951 4 0.00
953 1 0.00
966 2 0.00
968 1 0.00
971 1 0.00
978 251 0.13
979 518 0.27
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (902 bp):
AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCAACCGGGTC
CCCCTCTACGTGCTACGATCTTGCTGTCGCAACCCTCAGTCCAGTCAGATCTTAGACTGGGAATG
AACTCCGTATGCCTAAGCCAATCGACAAACAACGGAGTGGGCGGGCGGGCGGGCACTACGTTGGC
CAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTAGGTTTAGGCACATCTTCAT
ATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
GTGAAGTTTCATGGCAAGACAACTCGTTTTTCTATTTTTCATGATTTTCGAAACTTTTTAGGGTT
CGGGATTTTTTAAAATTTTTTCAGAAGCAGTTTTGACCCCAAACTAGGTAGACATGATCCTTGTA
TTTTTATTGGCATGCAAAAAAAAATTCAGCTAAAAAATCAAAGTGTAAAAGATTTTCTGACCATT
TGAAAAAAACATCCAAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCACAAA
TGCCCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAA
GAACCAGCACCCATCGCACATCATGTAGACACACCCCCCAGCTCCCCCGATCGCCAAAACCCCAA
TGCCACCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGAGCCTCGACAAAGAAAAATGCGGCAC
CAGCACATGCCCGACCCCAGCACGTGCTACCGCAACCCTCAGTTTGGTACAATCTTAGATTGGGA
ATGAACTCCATAAGCTTAGACCAGGAACGAACTCCGTATGCCTAAGTCAACCCACAA
Found at i:4600175 original size:79 final size:79
Alignment explanation
Indices: 4600039--4600189 Score: 257
Period size: 79 Copynumber: 1.9 Consensus size: 79
4600029 GGTGGTTGGT
*
4600039 TGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACA
1 TGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTCTAAATTCATACA
4600104 ATGGTCCATTTTTA
66 ATGGTCCATTTTTA
* ** *
4600118 TGGTTTAGGCACATCTTCATATTTGTGTGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACA
1 TGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTCTAAATTCATACA
4600183 ATGGTCC
66 ATGGTCC
4600190 GTTAAGCCTT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
79 67 1.00
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.41
Consensus pattern (79 bp):
TGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTCTAAATTCATACA
ATGGTCCATTTTTA
Found at i:4601044 original size:979 final size:978
Alignment explanation
Indices: 4599141--4601759 Score: 4506
Period size: 979 Copynumber: 2.7 Consensus size: 978
4599131 GTGGTTGGTG
* * * * *
4599141 GGTTTACGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTGTGGCTTGTGAATTCATACAA
1 GGTTTAGGCACATCTTCATATTTGTGTGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAA
* *
4599206 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
66 TGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
*
4599271 TCGAAACTTTTTGGGGTTCGGGATTTTTTAAAATTTTTCGAAAGGAGTTTTGGCCTCAAACTAGG
131 TCGAAACTTTTTGGGGTTCGGGATTTTTTAAAATTTTTTGAAAGGAGTTTTGGCCTCAAACTAGG
4599336 TAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAGAATTCAGGTAAAAACTTGAAGTGTAC
196 TAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAGAATTCAGGTAAAAACTTGAAGTGTAC
*
4599401 AAGATTTTGTGACCATTTGAAAAAAATGTCTTCATTTTAGACATTTTAATGGCTACTGGCAGCAA
261 AAGATTTTGTGACCATTTGAAAAAAGTGTCTTCATTTTAGACATTTTAATGGCTACTGGCAGCAA
4599466 ACTTGTAAAATCTGAAATGCCCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGG
326 ACTTGTAAAATCTGAAATGCCCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGG
4599531 GCCAATATAAGGTCCAAGAACCAGCACCCATCGCACATCATGTGCGCACCCCCCGGCCCCTCGAT
391 GCCAATATAAGGTCCAAGAACCAGCACCCATCGCACATCATGTGCGCACCCCCCGGCCCCTCGAT
4599596 CGCCGAAACCCCAATGCCGTCGGTCAGTTTCTCCGACGATGCTCCGGCGATGGTGCCTCGGTAAA
456 CGCCGAAACCCCAATGCCGTCGGTCAGTTTCTCCGACGATGCTCCGGCGATGGTGCCTCGGTAAA
4599661 GAAAAATGTGGCACCAGCACATGCCCGACCCCAGCATGTGCTACCGCAACCCTCGATTTGGTACA
521 GAAAAATGTGGCACCAGCACATGCCCGACCCCAGCATGTGCTACCGCAACCCTCGATTTGGTACA
4599726 ATCTTATATTGGGAATGAACTCCATATTCTTAGACCAGGAACGAACTCTGTATGCCTAAGTCAAC
586 ATCTTATATTGGGAATGAACTCCATATTCTTAGACCAGGAACGAACTCTGTATGCCTAAGTCAAC
4599791 CCACGAAACGGGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCAAC
651 CCACGAAACGGGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCAAC
4599856 CGGGTCCCCCTCAACGTGCTGCTGATCTTGCTGCCACAATCCTCAGTTCAGTCTAATCTTTGACT
716 CGGGTCCCCCTCAACGTGCTGCTGATCTTGCTGCCACAATCCTCAGTTCAGTCTAATCTTTGACT
4599921 GGGAATGAACTTCGTATGCCTAAGCCAATCGACGAAACGAACGGATGGGCGGGCGGGCGGGCACT
781 GGGAATGAACTTCGTATGCCTAAGCCAATCGACGAAACGAACGGATGGGCGGGCGGGCGGGCACT
4599986 ACGTCTGCCAGAGAGATAAGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTTGGTTTAGGCAC
846 ACGTCTGCCAGAGAGATAAGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTTGGTTTAGGCAC
4600051 ATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCATTTT
911 ATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCATTTT
4600116 TAT
976 TAT
4600119 GGTTTAGGCACATCTTCATATTTGTGTGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAA
1 GGTTTAGGCACATCTTCATATTTGTGTGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAA
4600184 TGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
66 TGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
*
4600249 TCGAAACTTTTTGGGGTTCGGGATTTTTTAAAATTTTTTGAAAGAAGTTTTGGCCTCAAACTAGG
131 TCGAAACTTTTTGGGGTTCGGGATTTTTTAAAATTTTTTGAAAGGAGTTTTGGCCTCAAACTAGG
4600314 TAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAGAATTCAGGTAAAAACTTGAAGTGTAC
196 TAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAGAATTCAGGTAAAAACTTGAAGTGTAC
4600379 AAGATTTTGTGACCATTTGAAAAAAGTGTCTTCATTTTAGACATTTTAATGGCTACTGGCAGCAA
261 AAGATTTTGTGACCATTTGAAAAAAGTGTCTTCATTTTAGACATTTTAATGGCTACTGGCAGCAA
*
4600444 ACTTGTAAAATCTGAAATGCCCTTTAAGGGGGTATGAGTTCTCAAGGTTTGATGAGGGATAGAGG
326 ACTTGTAAAATCTGAAATGCCCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGG
4600509 GCCAATATAAGGTCCAAGAACCAGCACCCATCGCACATCATGTGCGCACCCCCCGGCCCCTCTGA
391 GCCAATATAAGGTCCAAGAACCAGCACCCATCGCACATCATGTGCGCACCCCCCGGCCCCTC-GA
4600574 TCGCCGAAACCCCAATGCCGTCGGTCAGTTTCTCCGACGATGCTCCGGCGATGGTGCCTCGGTAA
455 TCGCCGAAACCCCAATGCCGTCGGTCAGTTTCTCCGACGATGCTCCGGCGATGGTGCCTCGGTAA
4600639 AGAAAAATGTGGCACCAGCACATGCCCGACCCCAGCATGTGCTACCGCAACCCTCGATTTGGTAC
520 AGAAAAATGTGGCACCAGCACATGCCCGACCCCAGCATGTGCTACCGCAACCCTCGATTTGGTAC
4600704 AATCTTATATTGGGAATGAACTCCATATTCTTAGACCAGGAACGAACTCTGTATGCCTAAGTCAA
585 AATCTTATATTGGGAATGAACTCCATATTCTTAGACCAGGAACGAACTCTGTATGCCTAAGTCAA
4600769 CCCACGAAACGGGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCAA
650 CCCACGAAACGGGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCAA
4600834 CCGGGTCCCCCTCAACGTGCTGCTGATCTTGCTGCCACAATCCTCAGTTCAGTCTAATCTTTGAC
715 CCGGGTCCCCCTCAACGTGCTGCTGATCTTGCTGCCACAATCCTCAGTTCAGTCTAATCTTTGAC
4600899 TGGGAATGAACTTCGTATGCCTAAGCCAATCGACGAAACGAACGGATGGGCGGGCGGGCGGGCAC
780 TGGGAATGAACTTCGTATGCCTAAGCCAATCGACGAAACGAACGGATGGGCGGGCGGGCGGGCAC
4600964 TACGTCTGCCAGAGAGATAAGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTTGGTTTAGGCA
845 TACGTCTGCCAGAGAGATAAGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTTGGTTTAGGCA
4601029 CATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCATTT
910 CATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCATTT
4601094 TTAT
975 TTAT
4601098 GGTTTAGGCACATCTTCATATTTGTGTGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAA
1 GGTTTAGGCACATCTTCATATTTGTGTGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAA
*
4601163 TGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
66 TGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* ** * * *
4601228 TGGAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCATCAAACTTA
131 TCGAAACTTTTTGGGGTTCGGGATTTTTTAAAATTTTTT-GAAAGGAGTTTTGGCCTCAAAC-TA
* * * * *
4601293 -GCAGACATGATCCTTGCATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAACTGT
194 GGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAGAATTCAGGTAAAAACTTGAAGTGT
* * * * ** * * * *
4601357 ACATGATTTAGTGACCGTTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCACC
259 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCTTCATTTTAGACATTTTAATGGCTACTGGCAGC
* * * * *
4601422 AAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGACTTCTCCAGGTTTGATGA-GGACTAG
324 AAACTTGTAAAATCTGAAATGCCCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA-TAG
* * *
4601486 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
388 AGGGCCAATATAAGGTCCAAGAACCAGCACCCATCGCACATCATGTGCG--CACCCCCCGGCCCC
* * * * * * * * *
4601551 CCGATCGCCGGAACCCCAATGGCGTCGGTTAGGTTCTCCGATGCTGCTCCGACGATGGTGCCCCG
451 TCGATCGCCGAAACCCCAATGCCGTCGGTCAGTTTCTCCGACGATGCTCCGGCGATGGTGCCTCG
* * * * * ** * * *
4601616 ATGAAGAAAAATGTGGCACCAACACCA-GCCCGAGCCCAGCATATGCTGTCGAAACCCTCGGTCT
516 GTAAAGAAAAATGTGGCACCAGCA-CATGCCCGACCCCAGCATGTGCTACCGCAACCCTCGATTT
** * * * ** * ** *
4601680 GGGCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAA
580 GGTACAATCTTATATTGGGAATGAACTCCATATTCTTAGACCAGGAACGAACTCTGTATGCCTAA
*
4601745 GTCAACCCATGAAAC
645 GTCAACCCACGAAAC
4601760 AAACGTGCGG
Statistics
Matches: 1560, Mismatches: 74, Indels: 11
0.95 0.04 0.01
Matches are distributed among these distances:
978 441 0.28
979 693 0.44
980 233 0.15
981 176 0.11
982 17 0.01
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (978 bp):
GGTTTAGGCACATCTTCATATTTGTGTGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAA
TGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
TCGAAACTTTTTGGGGTTCGGGATTTTTTAAAATTTTTTGAAAGGAGTTTTGGCCTCAAACTAGG
TAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAGAATTCAGGTAAAAACTTGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCTTCATTTTAGACATTTTAATGGCTACTGGCAGCAA
ACTTGTAAAATCTGAAATGCCCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGG
GCCAATATAAGGTCCAAGAACCAGCACCCATCGCACATCATGTGCGCACCCCCCGGCCCCTCGAT
CGCCGAAACCCCAATGCCGTCGGTCAGTTTCTCCGACGATGCTCCGGCGATGGTGCCTCGGTAAA
GAAAAATGTGGCACCAGCACATGCCCGACCCCAGCATGTGCTACCGCAACCCTCGATTTGGTACA
ATCTTATATTGGGAATGAACTCCATATTCTTAGACCAGGAACGAACTCTGTATGCCTAAGTCAAC
CCACGAAACGGGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCAAC
CGGGTCCCCCTCAACGTGCTGCTGATCTTGCTGCCACAATCCTCAGTTCAGTCTAATCTTTGACT
GGGAATGAACTTCGTATGCCTAAGCCAATCGACGAAACGAACGGATGGGCGGGCGGGCGGGCACT
ACGTCTGCCAGAGAGATAAGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTTGGTTTAGGCAC
ATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCATTTT
TAT
Found at i:4601154 original size:79 final size:79
Alignment explanation
Indices: 4601018--4601168 Score: 257
Period size: 79 Copynumber: 1.9 Consensus size: 79
4601008 GGTGGTTGGT
*
4601018 TGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACA
1 TGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTCTAAATTCATACA
4601083 ATGGTCCATTTTTA
66 ATGGTCCATTTTTA
* ** *
4601097 TGGTTTAGGCACATCTTCATATTTGTGTGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACA
1 TGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTCTAAATTCATACA
4601162 ATGGTCC
66 ATGGTCC
4601169 GTTAAGCCTT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
79 67 1.00
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.41
Consensus pattern (79 bp):
TGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTCTAAATTCATACA
ATGGTCCATTTTTA
Found at i:4601717 original size:26 final size:26
Alignment explanation
Indices: 4601688--4601740 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4601678 CTGGGCCGAT
4601688 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
4601714 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
4601740 C
1 C
4601741 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:4604059 original size:26 final size:26
Alignment explanation
Indices: 4604030--4604082 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4604020 TCGGTCCGAT
4604030 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4604056 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4604082 C
1 C
4604083 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4605807 original size:871 final size:869
Alignment explanation
Indices: 4603388--4605825 Score: 3323
Period size: 873 Copynumber: 2.8 Consensus size: 869
4603378 GAAACGAGCG
*
4603388 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
1 GGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * * *
4603453 CATATTTCTAC-GAGCCAATGCCATTTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAACC
66 CATATTTCTGCTTA-CCAATGCCA-TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * *
4603517 TTCACATGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTAC
129 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
* *
4603582 GGTTCGAGATTTTTTAAAATTTTTTCGAAAGCAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
194 GGTTCG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * *
4603647 TGTATTTTTGTTGGCATGCAAAAAAAATTCTGCTAAAATCTCAAAGTGTACAAGATTTTGTGACC
258 TGTATTTTTGTTGGCATGCAAAAAAAAATCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACC
4603712 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
323 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* *
4603777 AAATGCTTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
388 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * *
4603842 CAAGTACCAGCACCCATCAGACATCATGTGCGCACAGCCCCACGGGCCCCCCGATCGTCGGAACA
453 CAAGTACCAGCACCCATC-GACATCATGTGCGCACA-CCCCCCCGGCCCCCCGATCGTCGGAACC
* * *
4603907 CCAATGCCACCGATCAGGTTCTCCAACGATGCTCCGGTGGTGGTGCCCCGACGAAGAAAAATGCG
516 CCAATGCCACCG-TCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCG
4603972 GCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGATCTCGGTCCGATCTTAGAC
580 GCACCAGCACATGCCCGAGCCCAGCATGTGCTA-CACAA--C-C--T-TC-G---G----T---C
* * *
4604037 TGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAT
627 ------T-AA-TCC-AAT-CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * *
4604102 AAACGTGCGGGGGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCTC
681 AAACGTGAGGGGGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCC
* * * * * ** * *
4604167 CTCTGCGTCCTGTCGATCCTACTGCTGCAAGCCTTGGTTTGGTCTGATCTTAGACTAGGAATGAA
746 CTCTGCGTCCTGCCAATCCTACTACTGCAACCCTCGGTCCGGTCTAATCTTAGACTAGAAATGAA
* * * * * ** * *
4604232 CTCTGTATGCCTAAGCCTATCGATAAAACGAGCAGCGGGTGGGTGGGCGGGCACTACACT
811 CTATGTATGCCTAACCCAACCGACAAAAC-AGCAGCGGACGGGCGGGCGGGCACTACACC
* * *
4604292 AGCCAGAGAGATGGAATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
1 GGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
4604357 CATATTTCTG-TGTGCTAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC-TAAGCCT
66 CATATTTCTGCT-TACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * *
4604420 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTGATGATTTTCGAAACTTTTTGCA
130 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
* * *
4604485 GTTCGGGA-TTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTAGTAGACGTGCTCCTT
195 GTTC-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* * * *
4604549 GTATTTTTGTTGGAATGCCAAAAAAAATCAGCTAAAAATTCAAAGTCTACAAGATTTTGTGACCA
259 GTATTTTTGTTGGCATGCAAAAAAAAATCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCA
* *
4604614 TTTGAAAAAAGTATCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
324 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * *
4604679 CATGCGCTTTAA-GGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCC
389 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
*
4604742 AAGTACCAGCACTCATCGCACATCATGTGCGCACACCCCCCCTGGCCCCCTCGATCGTCGGAACC
454 AAGTACCAGCACCCATCG-ACATCATGTGCGCACACCCCCCC-GGCCCCC-CGATCGTCGGAACC
* * * *
4604807 CCAATGTCACCGGTCGGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACG
516 CCAATGCCACC-GTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCG
* * * * * ** *
4604872 ACACCAACACATGCCCGAGCCCGGCATGTGCTACTACAACCCTCAGTCTGGTCCGATCTTAGACT
580 GCACCAGCACATGCCCGAGCCCAGCATGTGCTAC-ACAACCTTCGGTCTAATCCAATCTTAGACT
* * * *
4604937 GTGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGTGCTCAGCTAGCCAGA
644 G-GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAACGTGAGGGGGCTCAGCCAGCCAGA
* * * *
4605002 GGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCTTGCTGCCAATCCTGCTACTG
708 GGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTCCTGCCAATCCTACTACTG
* *
4605067 TAACCCTCGGTCCGGTCTAATCTTAGACT-GTAAATGAACTATGTATGCCTAACCCAACCGACGA
773 CAACCCTCGGTCCGGTCTAATCTTAGACTAG-AAATGAACTATGTATGCCTAACCCAACCGACAA
*
4605131 AAC-G-AGCGGACGGGCGGGCGGGCACTACGCC
837 AACAGCAGCGGACGGGCGGGCGGGCACTACACC
* *
4605162 GGCCAGGGAGATGGGATGCGCCAA-CCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCT
1 GGCCAGAGAGATGGGATGCG-CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * *
4605226 TCATATTTTTGCTTACCAATACCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
65 TCATATTTCTGCTTACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
*
4605291 TCACGTGAAGTTTCATGACAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
130 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
* * *
4605356 GTTCAGGATTTTTTAAAACTTTTACGGAAGGAGTTTTGGCCCGAAACTTGGTAGACGTGATCCTT
195 GTTC-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
*
4605421 GTATTTTTGTTGGCATGCAAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
259 GTATTTTTGTTGGCATGCAAAAAAAAATCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCA
*
4605486 TTTGAAACAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
324 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
*
4605551 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCC
389 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
4605616 AAGTACCAGCACCCATCGTACATCATGTGCGCACA-CCCCCCGACCCCCCGATCGTCGAAACCCC
454 AAGTACCAGCACCCATCG-ACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCC
* ***
4605680 AATGCCGCCTGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTAAAGAAAAATGCGGC
518 AATGCCACC-GTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGC
* ** * *
4605745 ACCAGCACATACGTGAGCCCAGCATGTGCTGTCGCAACCTTCGGTCTAATCCAATCTTAGACTGG
582 ACCAGCACATGCCCGAGCCCAGCATGTGCT-ACACAACCTTCGGTCTAATCCAATCTTAGACTGG
4605810 AATGAACTCCGTATGC
646 AATGAACTCCGTATGC
4605826 TTAGACTGGG
Statistics
Matches: 1367, Mismatches: 150, Indels: 68
0.86 0.09 0.04
Matches are distributed among these distances:
870 144 0.11
871 199 0.15
872 191 0.14
873 209 0.15
874 52 0.04
875 3 0.00
877 1 0.00
883 1 0.00
886 1 0.00
890 1 0.00
894 2 0.00
897 1 0.00
898 7 0.01
899 58 0.04
900 134 0.10
901 182 0.13
902 70 0.05
903 33 0.02
904 78 0.06
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (869 bp):
GGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
CATATTTCTGCTTACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
TTCGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
ATTTTTGTTGGCATGCAAAAAAAAATCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATT
TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
GTACCAGCACCCATCGACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAAT
GCCACCGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
GCACATGCCCGAGCCCAGCATGTGCTACACAACCTTCGGTCTAATCCAATCTTAGACTGGAATGA
ACTCCGTATGCCTAAGTCAACCCACGAAACAAACGTGAGGGGGCTCAGCCAGCCAGAGGGGCGGG
ATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTCCTGCCAATCCTACTACTGCAACCCTC
GGTCCGGTCTAATCTTAGACTAGAAATGAACTATGTATGCCTAACCCAACCGACAAAACAGCAGC
GGACGGGCGGGCGGGCACTACACC
Found at i:4605834 original size:25 final size:26
Alignment explanation
Indices: 4605800--4605851 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4605790 CTAATCCAAT
4605800 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4605825 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4605851 C
1 C
4605852 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4606010 original size:26 final size:26
Alignment explanation
Indices: 4605981--4606030 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
4605971 CTAATCCGAT
4605981 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
*
4606007 CTTAGACTGGGAATGAGCTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
4606031 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:4606083 original size:182 final size:181
Alignment explanation
Indices: 4605777--4606105 Score: 514
Period size: 182 Copynumber: 1.8 Consensus size: 181
4605767 CATGTGCTGT
* *
4605777 CGCAACCTTCGGTCTAATCCAATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
1 CGCAACCCTCGGTCTAATCCAATCTTAGACTGGAATGAACTCCGTACGCTTAGACTGGGAATGAA
* * * * * * *
4605842 CTCCGTATGCCTAAGTCAACCCACGACACGACCGTGCGGGTGCTCAGTCGGCCAGAGGGGTGGGA
66 CTCCGTATGCCTAAGTCAACCCACGAAACAACCGTACAGGCGCTCAGCCGGCCAGAGGGGCGGGA
4605907 TGCGCAAGCCGGGGATCGCCGAGTCAATCTGCATGCTGCCAATCCTACTAC
131 TGCGCAAGCCGGGGATCGCCGAGTCAATCTGCATGCTGCCAATCCTACTAC
*
4605958 CGCAACCCTCGGTCTAATCCGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAATGA
1 CGCAACCCTCGGTCTAATCCAATCTTAGACT-GGAATGAACTCCGTACGCTTAGACTGGGAATGA
* * *
4606023 GCTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACAGGCGCTCAGCCGGCCAGAGGGGCGGG
65 ACTCCGTATGCCTAAGTCAACCCACGAAACAACCGTACAGGCGCTCAGCCGGCCAGAGGGGCGGG
* *
4606088 ATGTGCAAGTCGGGGATC
130 ATGCGCAAGCCGGGGATC
4606106 AACCATGTCC
Statistics
Matches: 132, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
181 29 0.22
182 103 0.78
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.19
Consensus pattern (181 bp):
CGCAACCCTCGGTCTAATCCAATCTTAGACTGGAATGAACTCCGTACGCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGTCAACCCACGAAACAACCGTACAGGCGCTCAGCCGGCCAGAGGGGCGGGA
TGCGCAAGCCGGGGATCGCCGAGTCAATCTGCATGCTGCCAATCCTACTAC
Found at i:4606855 original size:26 final size:26
Alignment explanation
Indices: 4606826--4606878 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4606816 CCGATCCGAT
4606826 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4606852 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4606878 C
1 C
4606879 GTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4607731 original size:26 final size:26
Alignment explanation
Indices: 4607680--4607732 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4607670 CCGGTCTGAT
*
4607680 CTTAAACTGGGAATGAACTTCATATG
1 CTTAAACTGGGAATGAACTCCATATG
* *
4607706 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
4607732 C
1 C
4607733 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:4608212 original size:840 final size:845
Alignment explanation
Indices: 4605954--4608401 Score: 2496
Period size: 840 Copynumber: 2.9 Consensus size: 845
4605944 GCCAATCCTA
** * * *
4605954 CTACCGCAACCCTCGGTCTAATCCGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGA
1 CTACCGCAACCCTCGGTCCGATCCGATCTTAAACTGGGAATGAACTCCATATGCTTAGACTGGGA
* * * * * *
4606019 ATGAGCTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACAGGCGCTCAGCCGGCCAGAGGGG
66 ATGAACTCCGTATGCCTAAGTCAACCCATCAAACGAGCGTACGGGCGCTCAGCAGACCAGAGGGG
* * * * ** * * *
4606084 CGGGATGTGCAAGTCGGGGATCAACCATGTCCCCCTCTATGTGTTAGC-GATCCTGCAGCCGCAA
131 CAGGATGTGCAAGCCGGGGATCGATCGGGTCCCCCTCTA-GTGTT-GCATATCCTACTGCCGCAA
* * * * * * *
4606148 CCGTCAGTTC-GATCCAATCTTAGACTACGAATGAACTCCGTATGCCTAAGCCACCCGACGAAAC
194 CCCTCAGTCCTG-TCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACAGACGAAAC
* ** * * * ** ** *
4606212 GAGTGGGTGGGGGGCGGGCACTACGCCGGCCAGAGAGATGGGATGCGCAAGCCATGGATCGATAG
258 GAGTAGG-GCTGGGCAGGCACTACACCAGCCAGAGAGACAGGATAAGCAAGCCGTGGATCGATAG
* * * ** *
4606277 GGTGATAGGTGGGTTAAGTCACATCTTCATATTTCTACGTACCAATGCCATTTTTATGG-TTCGT
322 GGTGGTAGGTGGGTTAAGGCACACCTTCATATTTCTATATGCCAATGCCATTTTTATGGATT-GT
* * ** * *
4606341 AAAATCATACAAT-GTTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACACATTTTCTA
386 AAATTCATACAATCG-TCCCTTAAGCCTTCACACGAAGTTTCATGGCAAGACGACTCATTTTCTA
* * * * ** * * *
4606405 -TTTTCATGATATTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
450 TTTTTCACGATATTTGAACCTTTCTACGGTTCGACATTTTTCAAAATTTTTTCAGAAGGAGTTTC
* * * * * *
4606469 GGCCACAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAA
515 AGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTCGCATGCACAAAAAAATTCAGCTAAA
* * * * *** ** ** * * *
4606534 AACTCAAAGTGTACAAGATTTTGTGACCATTTCAAGGCAGTAAACCTAAAATCTCAAATCTCTTT
580 AACTCGAAGTGTACAAGATTTTATCACCATTTGAAAAAAGT-GTCC--CCATTTCAGA-CACTTT
* * * ** ** ** ** ***** * * * **
4606599 AAGGGGT-GT-G-AG---TTCT-CGAGGT-T-TGATGAGGGAT-AGGCGGCCAATATAAGGGC-C
641 AATGGCTACTGGCAGAAAACCTATAAAATCTCAAATGCTCTTTAAGG-GG---GTGTGAGTTCTC
*** *** * **** *** * * * * * * *
4606653 AA-GTACCA-GCACCCATTGCACACC-CCCT-CGGTCCCCTTTA-TCACCGGAACCCTAATACCG
702 AAGGTTTGATG-AAGGATAGGGGGCCAATATAAGG--GCC--AAGT-ACCAGCACCC-AATGCCA
*
4606713 GCGGTCAGGTTCTCCGACGAAGCTCCGACGATGGTGCCCCAACAAAGAAAAATACGGCACCAGCA
760 CCGGTCAGGTTCTCCGACGAAGCTCCGACGATGGTGCCCCAACAAAGAAAAATACGGCACCAGCA
4606778 CATGCCCGAGCCCAGCATGTG
825 CATGCCCGAGCCCAGCATGTG
* * * * *
4606799 CTATCGCAACCTTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
1 CTACCGCAACCCTCGGTCCGATCCGATCTTAAACTGGGAATGAACTCCATATGCTTAGACTGGGA
* * * * * *
4606864 ATGAACTTCGTATGCGTAAGTCAACCCATGAAATGAGCGTACGGGCGCTCAGCCGGCCAGAGGGG
66 ATGAACTCCGTATGCCTAAGTCAACCCATCAAACGAGCGTACGGGCGCTCAGCAGACCAGAGGGG
* * * * * *
4606929 TAGGATGTGCAAGTCGGGGATCGGTTGGGTCCCCCTCTACGTGTTGCATATCGTACTGCCGTAAC
131 CAGGATGTGCAAGCCGGGGATCGATCGGGTCCCCCTCTA-GTGTTGCATATCCTACTGCCGCAAC
* * * * **
4606994 CCTCAGTCCTGTCTGATCTTGGACTGGGAATGAACTCCGTATGCCTAAGCCAATTGACGAAACGA
195 CCTCAGTCCTGTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACAGACGAAACGA
*
4607059 GTGGGCAAACGGGCTGGCGGCGGGCACTACACCAGCCAGAGAGACAGGATAAGCAAGCCGTGGAT
260 GT------A-GGGCT-G-GGCAGGCACTACACCAGCCAGAGAGACAGGATAAGCAAGCCGTGGAT
*
4607124 CGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATTTCTATATGCCAATGCCATTTTTATGG
316 CGATAGGGTGGTAGGTGGGTTAAGGCACACCTTCATATTTCTATATGCCAATGCCATTTTTATGG
* * *
4607189 CTTGTAAATTCATACTATCGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTT
381 ATTGTAAATTCATACAATCGTCCCTTAAGCCTTCACACGAAGTTTCATGGCAAGACGACTCATTT
* * * * **
4607254 TCTATTTTTCATGATATTTGATCCTTTCTGCGGTTTGGGATTTTTCAAAATTTTTTCAGAAGGAG
446 TCTATTTTTCACGATATTTGAACCTTTCTACGGTTCGACATTTTTCAAAATTTTTTCAGAAGGAG
** *
4607319 TTTTGGCCCCAAACTTGGTAGACTTGATCCTTGTATTTTTGTTCGCATGCACAAAAAAATTCAGC
511 TTTCAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTCGCATGCACAAAAAAATTCAGC
* * *
4607384 TAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
576 TAAAAACTCGAAGTGTACAAGATTTTATCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
4607449 AATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-CGAGG
641 AATGGCTACTGGCAGAAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
*
4607513 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAATGCCACCGGTCAGGTT
706 TTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAATGCCACCGGTCAGGTT
* * * * * *
4607578 CTTCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCTAGC
771 CTCCGACGAAGCTCCGACGATGGTGCCCCAACAAAGAAAAATACGGCACCAGCACATGCCCGAGC
4607643 CCAGCATGTG
836 CCAGCATGTG
* * * *
4607653 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAAACTGGGAATGAACTTCATATGCTTAGACTGGGA
1 CTACCGCAACCCTCGGTCCGATCCGATCTTAAACTGGGAATGAACTCCATATGCTTAGACTGGGA
4607718 ATGAACTCCGTATGCCTAAGTCAACCCA-CAAACGAGCGTACGGGCGCTCAGCAGACCAGAGGGG
66 ATGAACTCCGTATGCCTAAGTCAACCCATCAAACGAGCGTACGGGCGCTCAGCAGACCAGAGGGG
*
4607782 CAGGAT-T-CATAAGCCGGGGATCGATCGGGT-CCCCTCT-G-G-TGCTATCGATCCTGCTGCCG
131 CAGGATGTGC--AAGCCGGGGATCGATCGGGTCCCCCTCTAGTGTTGC-AT--ATCCTACTGCCG
*
4607841 CAACCCTTAGTCC-GATCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACAGACGA
191 CAACCCTCAGTCCTG-TCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACAGACGA
* * * **
4607905 AACGAGT-GGGCT-GGCAGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGAT
255 AACGAGTAGGGCTGGGCAGGCACTACACCAGCCAGAGAGACAGGATAAGCAAGCCGTGGATCGAT
* * *
4607968 AGGGTGGTAGGTTGGTTAAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGATTG
320 AGGGTGGTAGGTGGGTTAAGGCACACCTTCATATTTCTATATGCCAATGCCATTTTTATGGATTG
* * * * *
4608033 TAAATTCATACAATGGTCCCTTAAGCCTTCACGCGACGTTTCATGGCAAGACGACTCGTTTTTTA
385 TAAATTCATACAATCGTCCCTTAAGCCTTCACACGAAGTTTCATGGCAAGACGACTCATTTTCTA
* * *
4608098 TTTTTCACGATTTTTGAAACCTTT-TATGGTTCGACATTTTTTAAAATTTTTTCAGAAGGAGTTT
450 TTTTTCACGATATTTG-AACCTTTCTACGGTTCGACATTTTTCAAAATTTTTTCAGAAGGAGTTT
** *
4608162 CAGCTGCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
514 CAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTCGCATGCACAAAAAAATTCAGCTAA
* *
4608227 AAATTTGAAGTGTACAAGATTTTATCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
579 AAACTCGAAGTGTACAAGATTTTATCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
4608292 GGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCAAGGTTT
644 GGCTACTGGCAGAAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
* * *
4608357 GATGAATGATATGGGGCCAATATAAGGGCCAAGTACTAGCACCCA
709 GATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
4608402 TCACACATCA
Statistics
Matches: 1358, Mismatches: 208, Indels: 78
0.83 0.13 0.05
Matches are distributed among these distances:
840 383 0.28
841 54 0.04
843 5 0.00
844 2 0.00
845 221 0.16
846 1 0.00
848 3 0.00
849 3 0.00
850 12 0.01
851 80 0.06
852 12 0.01
853 214 0.16
854 322 0.24
855 9 0.01
856 10 0.01
857 13 0.01
858 3 0.00
859 8 0.01
860 3 0.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (845 bp):
CTACCGCAACCCTCGGTCCGATCCGATCTTAAACTGGGAATGAACTCCATATGCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGTCAACCCATCAAACGAGCGTACGGGCGCTCAGCAGACCAGAGGGG
CAGGATGTGCAAGCCGGGGATCGATCGGGTCCCCCTCTAGTGTTGCATATCCTACTGCCGCAACC
CTCAGTCCTGTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACAGACGAAACGAG
TAGGGCTGGGCAGGCACTACACCAGCCAGAGAGACAGGATAAGCAAGCCGTGGATCGATAGGGTG
GTAGGTGGGTTAAGGCACACCTTCATATTTCTATATGCCAATGCCATTTTTATGGATTGTAAATT
CATACAATCGTCCCTTAAGCCTTCACACGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTC
ACGATATTTGAACCTTTCTACGGTTCGACATTTTTCAAAATTTTTTCAGAAGGAGTTTCAGCCCC
AAACTTGGTAGACGTGATCCTTGTATTTTTGTTCGCATGCACAAAAAAATTCAGCTAAAAACTCG
AAGTGTACAAGATTTTATCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
GGCAGAAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAAG
GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAATGCCACCGGTCAGGTTCTCCGACGAA
GCTCCGACGATGGTGCCCCAACAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
Found at i:4608609 original size:26 final size:26
Alignment explanation
Indices: 4608573--4608625 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4608563 CTGGTCTGAT
4608573 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4608599 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4608625 C
1 C
4608626 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4608857 original size:173 final size:173
Alignment explanation
Indices: 4608552--4609066 Score: 680
Period size: 173 Copynumber: 3.0 Consensus size: 173
4608542 TGTGCTGTTG
*
4608552 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
1 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * ** * **
4608617 TCCGTATGCCTAAGTCAACCCACGAAACAAGCATACAGGCACTCAGTCGGTTAGAGGGGTGGGAT
66 TCCGTATGCCTAAGTCAAACCACGAAACGAGCATGCAGGCACTCAGCCGGCCAGAAGGGCAGGAT
*
4608682 GCGCAAGCTGGGGATCGATCGGGTCCCCTTCTGCGTGCTGCCA
131 GCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCA
*
4608725 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAATGAAC
1 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * *
4608790 TCCGTGTGCCTAAGTCAAACCACGAAACGAGCGTGCAGGCTCTCAGCCGGCCAGAAAGGCAGGAT
66 TCCGTATGCCTAAGTCAAACCACGAAACGAGCATGCAGGCACTCAGCCGGCCAGAAGGGCAGGAT
* *
4608855 GCGC-AGGTAGGGGATCGA-CTAGGTCCCCCTCTGCGTGCTGCCA
131 GCGCAAGCT-GGGGATCGATC-GGGTCCCCCTCTGCGTGCTGCCA
**
4608898 CAACCCTCGGTCCAGTCCGATCTTAGACTGGGAAT-ACACTCCGTATGCTTAGACTGGGAATGAA
1 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGA-ACTCCGTATGCTTAGACTGGGAATGAA
* * * * **
4608962 CTCAGTATGCCTAAGTC-AACACACGAAGCGAGCATGCGGGCACTCAGCCGACCAG-AGGGGTGA
65 CTCCGTATGCCTAAGTCAAAC-CACGAAACGAGCATGCAGGCACTCAGCCGGCCAGAAGGGCAG-
* * * *
4609025 GATGCGTAAGCCGGGGATCGATCGGCTCCCCCTCTACGTGCT
128 GATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCT
4609067 ACCGATCCTA
Statistics
Matches: 298, Mismatches: 37, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
172 12 0.04
173 283 0.95
174 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (173 bp):
CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAAACCACGAAACGAGCATGCAGGCACTCAGCCGGCCAGAAGGGCAGGAT
GCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCA
Found at i:4608948 original size:26 final size:26
Alignment explanation
Indices: 4608919--4608971 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
4608909 CCAGTCCGAT
*
4608919 CTTAGACTGGGAAT-ACACTCCGTATG
1 CTTAGACTGGGAATGA-ACTCAGTATG
4608945 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
4608971 C
1 C
4608972 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Done.