Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 34 of 129
Found at i:4611301 original size:26 final size:26
Alignment explanation
Indices: 4611272--4611324 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4611262 CCGGTCTGAT
4611272 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4611298 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4611324 C
1 C
4611325 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4611472 original size:892 final size:903
Alignment explanation
Indices: 4609740--4612097 Score: 3505
Period size: 892 Copynumber: 2.6 Consensus size: 903
4609730 TGCCCCGACG
*
4609740 GCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATACGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
4609805 ATATTTCGGCCTGCCAATGCCATTTTTATGGCTTGTAAAGTCATACAATGGTCCCTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
4609870 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTATATTTTTCATGATTTTTGAAACTTTTTACGGT
* * * *
4609935 TCGAGATTTTTTAAAATTTTTTTGAAAGGATTTTTGGCCCCAAACTTGTTAGACT-TGATCCTTG
196 TCG-GATTTTTTAAAATTTTTTAG-AAGGAGTTTTGGCCCCAAACTTGGTAGA-TATAATCCTTG
* * * *
4609999 TATTTTTTTTGGCATGCGCAAAAAAATTCAACTAAAAACTTGAAGTGTACAAGTTTTTGTGACCT
258 TATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTTGAAGTGTACAAGATTTTGTGACCA
* *
4610064 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCA
323 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCA
*
4610129 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGGTTGATGAGGGATAGGGGGCCAATAAAAGGGCC
388 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGGTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * *
4610194 AAGTCCCAACACCCACCGCACATCATGTGCGCACACGCCCCCCGAGCCCCCGATCTCCAGAACCC
453 AAGTCACAACACCCATCGCACATCATGTGCGCACA-GCCCCCCGACCCCCCGATCTCCGGAACCC
*
4610259 CAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGTGG
517 CAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGTAG
*
4610324 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCATAACCCTCGGTCCGATCCGATCTTAGACTG
582 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTG
*
4610389 GGAATGAACTCCGTACGCTTGGACTGGGAATGAACTCCATATGCCTAACTCAACCCACGAAATGA
647 GGAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCATATGCCTAACTCAACCCACGAAATGA
* *
4610454 GCGTGCGGGCACTCAGCCGACCAGAGGGGCGGGATGCGCAAGCAGGGGATCGATCGGGTCCCCCT
712 GCGTGCGGGCACTCAGCCGACCAGAGGGGCGAGATGCGCAAGCAGAGGATCGATCGGGTCCCCCT
** *
4610519 CTGCGTGCTACCGATCTTGCTGCCACAACCATCATTCCAGTCTGATCTTCGACTCGGAATGAACT
777 CTGCGTGCTACCGATCTTGCTGCCACAACCATCATTCCAGTCCAATCTTAGACTCGGAATGAACT
*
4610584 CCGTATGCCTAAG-C-C-AAC-C-G-A-CGAAACGAGCGGGC-G-GG-CA-C-TAC-A-CCA
842 CCGTATGCCTAAGCCACAAACGCAGCAGCGAAACGAGCGGGCGGCGGACAGCGCACTAGCCA
* * *
4610632 GCCAGAGAGACGGGATGCGTAAGCTGTGGATCGATAGGGTGGTAGGTGGGATTGGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * **
4610697 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGCTAACTTAAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
4610762 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGAT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTATATTTTTCATGATTTTTGAAACTTTTTACG-G
* *** *
4610827 TTAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCTTGAACTTGGTAGATACAATCCTTGT
195 TTCGGATTTTTTAAAATTTTTT-AGAAGGAGTTTTGGCCCCAAACTTGGTAGATATAATCCTTGT
* *
4610892 ATTTTTGTTGGCATGCATAAAACAATTCAACTAAAAACTTGAAGTGTACAAGATTTTGTGACCAT
259 ATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTTGAAGTGTACAAGATTTTGTGACCAT
4610957 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAA
324 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAA
* *
4611022 ATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGGTTGATGAGGGATAGGGGGCCGATATAAGGGCCA
389 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGGTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
4611087 AGTCACAACACCCATCGCACATCATGTGCGCACATGCCCCCCGACCCCCCGATCTCCGGAACCCC
454 AGTCACAACACCCATCGCACATCATGTGCGCACA-GCCCCCCGACCCCCCGATCTCCGGAACCCC
*
4611152 AATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTAGC
518 AATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGTAGC
* * *
4611217 ACCAGCACATGCCCGAGCCCAGCTTGTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGG
583 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGG
* * *
4611282 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAG
648 GAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCATATGCCTAACTCAACCCACGAAATGAG
* * * *
4611347 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGTGCAAGCCGAGGATCGATCGGGTCCCCCTC
713 CGTGCGGGCACTCAGCCGACCAGAGGGGCGAGATGCGCAAGCAGAGGATCGATCGGGTCCCCCTC
* * *** *
4611412 TGCGTGCTATCGATCTTGCTGCCAGAACCATCATTTTGGTCCAATCTTAGACTGGGAATGAACTC
778 TGCGTGCTACCGATCTTGCTGCCACAACCATCATTCCAGTCCAATCTTAGACTCGGAATGAACTC
4611477 CGTATGCCTAAGCCAACCGACGAAACGAGCAGGCAGCGAAACGAGCGGGCGGGCGGACAGGCGGG
843 CGTATGCCTAAG----CC-AC-AAAC--GCA-GCAGCGAAACGAGCGGGC-GGCGGACA-GC--G
*
4611542 CACTATGCCG
895 CACTA-GCCA
** * *
4611552 GCCAGAGAGACGGGATGCGCAAGCCATCGATCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
4611617 ATATTTCTGCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTGAGCCTTC
66 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
4611682 ACGTGAAGTTTCATGGCAAGACGACTCATTTTATATTTTTCATGATTTTCGAAACTTTTTACGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTATATTTTTCATGATTTTTGAAACTTTTTACGGT
* * * *
4611747 TCGGTATTTTTTAAAAATTTTTTGGAAGGAGTTTTGACCCCAAACTTGGTAGACATTATCCTT-T
196 TCGG-ATTTTTT-AAAATTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGATATAATCCTTGT
* * *
4611811 ATTTTTGTTGGCATGCACAAAAAAAGTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTAACCAT
259 ATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTTGAAGTGTACAAGATTTTGTGACCAT
* *
4611876 CTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAA
324 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAA
* *
4611941 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCA
389 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGGTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * * *
4612006 AGT-ACCAGCACCCATCGCATATCATGTGCACACA--CCCCCGGCCCCCTCGATCGT-CGAAACC
454 AGTCA-CAACACCCATCGCACATCATGTGCGCACAGCCCCCCGACCCCC-CGATC-TCCGGAACC
* * *
4612067 CCAATGCCGCCGGTTAGGTTCTCCGGTGATG
516 CCAATGCCGCCAGTCAGGTTCTCCGGCGATG
4612098 GTGCCCCGAC
Statistics
Matches: 1319, Mismatches: 111, Indels: 47
0.89 0.08 0.03
Matches are distributed among these distances:
891 1 0.00
892 785 0.60
893 4 0.00
897 1 0.00
899 1 0.00
901 3 0.00
904 1 0.00
906 1 0.00
907 1 0.00
908 14 0.01
910 1 0.00
911 2 0.00
912 2 0.00
914 1 0.00
916 11 0.01
917 41 0.03
918 3 0.00
919 218 0.17
920 218 0.17
921 10 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (903 bp):
GCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ACGTGAAGTTTCATGGCAAGACGACTCGTTTTATATTTTTCATGATTTTTGAAACTTTTTACGGT
TCGGATTTTTTAAAATTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGATATAATCCTTGTAT
TTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTT
GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAAT
GCTCTTTAAGGGGGTGTGAGTTCTCGAGGGTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
TCACAACACCCATCGCACATCATGTGCGCACAGCCCCCCGACCCCCCGATCTCCGGAACCCCAAT
GCCGCCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGTAGCACC
AGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAA
TGAACTCCGTACGCTTAGACTGGGAATGAACTCCATATGCCTAACTCAACCCACGAAATGAGCGT
GCGGGCACTCAGCCGACCAGAGGGGCGAGATGCGCAAGCAGAGGATCGATCGGGTCCCCCTCTGC
GTGCTACCGATCTTGCTGCCACAACCATCATTCCAGTCCAATCTTAGACTCGGAATGAACTCCGT
ATGCCTAAGCCACAAACGCAGCAGCGAAACGAGCGGGCGGCGGACAGCGCACTAGCCA
Found at i:4614546 original size:26 final size:26
Alignment explanation
Indices: 4614495--4614547 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4614485 CTGGTCTAAT
* *
4614495 CTTAGACTAGGAATGAACTTCTTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
4614521 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4614547 C
1 C
4614548 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4615417 original size:26 final size:26
Alignment explanation
Indices: 4615388--4615440 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4615378 CCGGTCCTAT
*
4615388 CTTAGAGTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
4615414 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
4615440 C
1 C
4615441 CGAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:4615955 original size:895 final size:889
Alignment explanation
Indices: 4613158--4617188 Score: 4842
Period size: 895 Copynumber: 4.5 Consensus size: 889
4613148 CCAGTATGAT
* * *
4613158 CTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCGAAAGGAGTTTTGGCTCCAAACTTGGTAGAC
1 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
4613223 GTGATCCTAGTATTTTTGTTGGCATGCACTAAAAAATTCTGCCAAAAACTCGAAGTGTATAAGAT
66 GTGATCCTTGTATTTTTGTTGGCATGCACTAAAACATTCAGCCAAAAACTCGAAGTGTACAAGAT
* *
4613288 TTTGTGACCATTTGAAAAAAGTGACCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTG
131 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
4613353 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAA
196 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
4613418 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAGCCCCCCCCGGCCTGCCCGA
261 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCCGGCC-CCCCGA
** * * * * * *
4613483 TCGTCGGAACCTTAATGCTGTCGGTCAGGTTCTTCGGTGATGCTCTGGCCATGGTGCCCCGATGA
323 TCGTCGGAACCCCAA---TGTC-GTCAGGTTC--AGGT--T-CTCCGACGATGGTGCCCTGACGA
* * ** **
4613548 AGAAAAATGTGACACCGGCACATGCCTC-AGCCCAGCATGTGCTATCGTAA-CC-C--T-CGG--
379 AGAAAAATGTGGCACCAGCACATGCC-CGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTC
*
4613605 ---TC-----C-GG--T---CT--G-AT-CTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAA
443 TAATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * *
4613652 CCCATTAAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCACAAGCTGGGGATCA
508 CCCA-TGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCA
* * * *
4613717 GTCAGGTCCCCCTTGCATGCTGCCGTTCTTGCTGCCGCAACCCTCGATCCAATCCGATCTTGGAC
572 GTCAGGTCCCCCTTGCATGCTGCCGATCCTGCTGCCACAACCCTCGATCCAATCCGATCTTAGAC
**
4613782 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGC-AGGCGGGCGGGCACTAC
637 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGAGGCGGGCGGGCACTAC
* * *
4613846 GTCGGCCAGAGAGACGGAATGCGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCACAT
702 GCCGGCCAGAGAGACGGAATGCGCAAGCCGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACAT
4613911 CTTCATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
767 CTTCATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * **
4613976 CTTCACGTGAAGTTTCCTGGCAAGATTACTCGATTTCTATTTTTCACGATTTTTGAAA
832 CTTCACGTGAAGTTTCATGGCAAGATGACTCGATTTCTATTTTTCACGATTTTCAAAA
* * *
4614034 CTTTTTATGGTTCGGGATTTTTTTAAATTTTTTCTG-AAGGAGCTTTGGCCCCAAACTTGGTAGA
1 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
4614098 CGCGATCCTTGTATTTTTGTTGGCATGCA-TAAAACAATTCAGCTAAAAACTCGAAGTGTACAAG
65 CGTGATCCTTGTATTTTTGTTGGCATGCACTAAAAC-ATTCAGCCAAAAACTCGAAGTGTACAAG
*
4614162 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACC
129 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
4614227 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
194 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * * *
4614292 AATATAAGGG-CAAGTACTAGTA-CCATCGCCCATCATGTGCGCACACCACCCC-GCCCCCCAAT
259 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGAT
* *
4614354 C-CCGGAA-CCCAATGCTGCCAGTCAGGTTCTCCGGTGATGCTCTGGCGATGCTCGGTCGATGGT
324 CGTCGGAACCCCAATG-T--C-GTCAGG-T-TCAGGT--T-CTC---CGA--------CGATGGT
* ** * * *
4614417 GCCTTGGTGAATAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTC
369 GCCCTGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTC
* * *
4614482 GGTCTGGTCTAATCTTAGACTAGGAATGAACTTCTTATGCTTAGACTGGGAATGAACTCCGTATG
434 GGTCCGGTCTAATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * *
4614547 CCTAAGTCAACACATGAAACGAGCGTGTGGGTGCACAGCCGACCAGAGGGGCAGGATGCGCAAGC
498 CCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGC
* * * ** * * * * *
4614612 CAGGGATC-GGCCGAGTCCCCCTCTGTGTGTTGCCAATCCTGCTGCCACAACCCTTGGTCCAGTC
563 CGGGGATCAGTCAG-GTCCCCCT-TGCATGCTGCCGATCCTGCTGCCACAACCCTCGATCCAATC
* *
4614676 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGAGCGGGCAGG
626 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCG-G-GCG-AGG
* *
4614741 CGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGATGGTAGGT
688 CGGGCGGGCACTACGCCGGCCAGAGAGACGGAATGCGCAAGCCGTGGATCGATAGGATGGTAGGT
* * * * *
4614806 GGGTTTAGGCACATCTTCATA-TTATCCGTCCCAATTCCATTTTTATGGCTTGTAAATTTATACA
753 GGGTTTAGGCACATCTTCATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
4614870 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
818 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGATTTCTATTTTTCACGATT
4614935 TTCAAAA
883 TTCAAAA
* * *** * *
4614942 ATTTTTACGATTCGGGATTTTTTAAAATTTTTTCGAAAATCGTTTTGGCCCCAAGCTTGGTAGAT
1 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
4615007 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAGACTCGAAGTGTACAAGAT
66 GTGATCCTTGTATTTTTGTTGGCATGCACTAAAACATTCAGCCAAAAACTCGAAGTGTACAAGAT
* * *
4615072 TTTGTGACCATTTGAAAAAAATGTCCTCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTG
131 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
4615137 TAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGAGCCAA
196 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* **
4615202 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCTCAACCCCCTCGAT
261 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGGCCCCC-CGAT
* * * *
4615267 CGTCGTAACCCTAATGTCG-CAGG-TCAGGTTCTCCGACGATGGTGCCCTGGCCAAGAAAAATGT
324 CGTCGGAACCCCAATGTCGTCAGGTTCAGGTTCTCCGACGATGGTGCCCTGACGAAGAAAAATGT
* *
4615330 GCCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCCCAACCCTCGGTCCGGTCCT-ATCTTAGA
389 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGT-CTAATCTTAGA
* * * *
4615394 GTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCGAAGTCAACCCACGGAA
453 CTG-GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
* * * * * *
4615459 CGAGCGTGTGGGTACTCAGTCGGCCAGAGGGGCGGGATACGCAAGCCGGGGATCGGTCAGGTCCT
517 CGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAGTCAGGTCC-
* * * * ** ** *
4615524 TCCTCTACATGTTGTCGATCCTGCTGCCACAACCCTC-AGTCCGGTCTAATCTTAGACTAGGAAT
581 CCCT-TGCATGCTGCCGATCCTGCTGCCACAACCCTCGA-TCCAATCCGATCTTAGACTGGGAAT
* * *
4615588 GAACTCCGTATGCCTAAGCCAACCGATGAAATGAGTGGGCAGGAGGGCGGGCGGGCACTATGCCG
644 GAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGC--GA-GGCGGGCGGGCACTACGCCG
* * *
4615653 ACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTC
706 GCCAGAGAGACGGAATGCGCAAGCCGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTC
* * * * * *
4615718 ATATTTTTGCGTGCCAATGCCATTTTTATGGCATGTAAATTGATACTATGGTCCCTTAAGCCTTC
771 ATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
*
4615783 ACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAA
836 ACGTGAAGTTTCATGGCAAGATGACTCGATTTCTATTTTTCACGATTTTCAAAA
* *
4615837 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCTCCAAACTTGTTAGAC
1 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
4615902 ATGATCCTAGTATTTTTGTTGGCATGCACTAAAACATTCTGCCAAAAACTCGAAGTGTACAAGAT
66 GTGATCCTTGTATTTTTGTTGGCATGCACTAAAACATTCAGCCAAAAACTCGAAGTGTACAAGAT
*
4615967 TTTGTGACCATTTGAAAAAAGTGTCCCCGTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
131 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
4616032 TAAAATCTCAAATGTTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
196 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * *
4616097 TATAAGGGCCAAGTACCAGCACCCATCGCACAGCATGTGTGCACAGCCCCCCCGGCCTGCCCGAT
261 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCC-CCCCGAT
* * ** *
4616162 CGTCGGAACCCCAATGCTATCGATCAGGTTCTTCGAGGATGCTCTGGTGATGGTGCCCCGACGAA
324 CGTCGGAACCCCAATG---TCG-TCAGG---TTC-AGG-TTCTCCGACGATGGTGCCCTGACGAA
* * **
4616227 GAAAAATGCGGCACCAGCACATGCCCCAGCCCAGCATGTGCTATCACAA-CC-C--T-CGG----
380 GAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCTA
* *
4616283 ----T---CTGG--T---CT--G-ATG-TCAGACTGGGAATGAACTCCGTATGCCTAAGTGAACC
445 ATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * *
4616332 CATTAAAATGAGCGTGCGGGGGCTCAGCCGGCCAGAAGGGCAGGATGCGCAAGCCGGGGATCAGT
510 CA-TGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAGT
* * * * * * *
4616397 CAGGTCCCCCTTGCATGCTACCGTTCTTGCTACCGCAATCCTCGATCCGATCCGATCTTAGACTG
574 CAGGTCCCCCTTGCATGCTGCCGATCCTGCTGCCACAACCCTCGATCCAATCCGATCTTAGACTG
* *
4616462 GGAATGAACTCCGTATGGCTAAGCCAACCGACGAAATGA----GCGA-GCGGGCGGGCACTACGT
639 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGAGGCGGGCGGGCACTACGC
* *
4616522 CGGCCAGAGAGACGGAATGCGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCACATCT
704 CGGCCAGAGAGACGGAATGCGCAAGCCGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCT
*
4616587 TCATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCT
769 TCATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* *
4616652 TCACGTGAAGTTTCCTGGCAAGATGACTCGATTTCTATTTTTCACGAGTTTT-GAAA
834 TCACGTGAAGTTTCATGGCAAGATGACTCGATTTCTATTTTTCACGA-TTTTCAAAA
* * * *
4616708 CTTTTTGCGATTCGGGATTTTTTAAAATTTTTTTCTG-AAGCAGCTTTGGCCCCAAACTTGGTAG
1 CTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTC-GAAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * * *
4616772 ACGCGATCCTTGTATTTTTGTTGGCTTGCAC-AAAACAATTCAGCGAAAAAATCGAAGTGTAGAA
64 ACGTGATCCTTGTATTTTTGTTGGCATGCACTAAAAC-ATTCAGCCAAAAACTCGAAGTGTACAA
4616836 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
128 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
4616901 TTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
193 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
4616966 CAATATAAGGGCAAAGTACCAGCACCCATTGCACATCATGTCCGCACACCCCCCCGACCCCCCCG
258 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-GCCCCCCG
* * * * ** *
4617031 ATCGTCGGAACCCCAACGCCGCCGATCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCTGACA
322 ATCGTCGGAACCCCAA---TGTCG-TCAGG-T-T-CAG-G-TTCTCCGACGATGGTGCCCTGACG
** ** * **
4617096 AAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAAAAACTGCTGCCGCAACCCTCGGTCCAATC
378 AAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTC
* * *
4617161 TGACCGTAGACTGGGAATGAACTCCGTA
443 TAATCTTAGACT-GGAATGAACTCCGTA
4617189 AGCCTAAGCC
Statistics
Matches: 2728, Mismatches: 307, Indels: 220
0.84 0.09 0.07
Matches are distributed among these distances:
865 2 0.00
866 1 0.00
868 21 0.01
869 7 0.00
870 10 0.00
871 317 0.12
872 263 0.10
873 4 0.00
874 23 0.01
875 18 0.01
876 247 0.09
877 1 0.00
878 1 0.00
879 128 0.05
880 42 0.02
881 61 0.02
882 1 0.00
883 1 0.00
884 5 0.00
887 3 0.00
888 2 0.00
889 3 0.00
890 3 0.00
892 2 0.00
893 191 0.07
894 178 0.07
895 407 0.15
896 11 0.00
898 4 0.00
900 4 0.00
901 8 0.00
902 1 0.00
903 3 0.00
904 64 0.02
905 126 0.05
906 63 0.02
907 7 0.00
908 344 0.13
909 98 0.04
910 30 0.01
911 2 0.00
912 6 0.00
913 4 0.00
914 5 0.00
915 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
GTGATCCTTGTATTTTTGTTGGCATGCACTAAAACATTCAGCCAAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCG
TCGGAACCCCAATGTCGTCAGGTTCAGGTTCTCCGACGATGGTGCCCTGACGAAGAAAAATGTGG
CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCTAATCTTAGACTG
GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
CGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAGTCAGGTCCCCCTT
GCATGCTGCCGATCCTGCTGCCACAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAACTCC
GTATGCCTAAGCCAACCGACGAAATGAGCGGGCGAGGCGGGCGGGCACTACGCCGGCCAGAGAGA
CGGAATGCGCAAGCCGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCC
ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
TCATGGCAAGATGACTCGATTTCTATTTTTCACGATTTTCAAAA
Found at i:4617900 original size:26 final size:26
Alignment explanation
Indices: 4617871--4617923 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4617861 CCAGTTCGAT
* * *
4617871 CTTAGATTGGGAATGATCTCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
4617897 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
4617923 C
1 C
4617924 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:4619262 original size:890 final size:883
Alignment explanation
Indices: 4617167--4619562 Score: 3272
Period size: 890 Copynumber: 2.7 Consensus size: 883
4617157 AATCTGACCG
* **
4617167 TAGACTGGGAATGAACTCCGTAAGCCTAAGCCAACCGACGAAATAAGCGGGCGGGCGGGCGGGCA
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-GGGCGGGCGGGCGGGCA
* * *
4617232 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGATAGGTGGGTTTAGGC
65 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGT
* * *
4617297 ACATCTTCATATTTTTGCGTGCCAATACCATTTCTATGGCTTGTAAATTCATACAATGGTCCCTT
130 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCTT
*
4617362 AAGCCTTCACGTGAAG-TGTCATGGCAAGACGACTCGTTTTCTATCTTTCACGATTTTTGAAACT
194 AAGCCTTCACGTGAAGTTG-CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* **
4617426 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGCAGGAGTTTTGGAACCAAACTTGGTAGACAT
258 TTTTACGGTTCGGGATTTTTTAAAATTTTTT-AGGAGGAGTTTTGGCCCCAAACTTGGTAGACAT
*
4617491 GATCCTTGTATTTTTGTTGGCTTGTACAAAAAAAA-TCAGCTAAAAACTCGAAGTGTACAAGATT
322 GATCCTTGTATTTTTGTTGGC--GTGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * ** * *
4617555 TTGTTACCATTTGAAAAACGTGTCCCCATTTCCCACACTTTAATGGGTACTGGTAGCAAACCTGT
385 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
4617620 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAAGAGGGATAGGGGGCCAAT
450 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* **
4617685 ATAAGGGCCAAGTACCAGCACACATCACACATCATGTGCGCACACCCCCCCGATCGTCGGAAGCC
515 ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCG---GTC--ACCCC
*** * * * * * * *
4617750 CAAT-GCCACCAGTCAAGTTCT-CTGG-C-GATGCTTCGACGATGGTGTCCCGACGAAGAAAAAT
574 CAATCGCCGGAAGCCAA-TGCTGCCGGTCAGGT-TTTCGGCGATGGTGCCCCGACGAAGAAAAAT
* * *
4617811 ACAGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCGATCCAGTTCGATCTTAG
637 ACAGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCCAGTTCAATCTTAG
* * * * *
4617876 ATTGGGAATGATCTCCGTATGCTTAGACTGGGAATGAACCCCGTATGCCTAAGTCAACCCACGAA
702 ACTGGGAATGAACTCCGTATGCTTAGAATGGAAATGAACCCCATATGCCTAAGTCAACCCACGAA
* * * *
4617941 ACGAGCGTGCGGGCGTTCAGCCAGCCAGAGGGGCGGGATGCCCAAGCCGAGGATCGACCGGGTCC
767 ACGAGCCTGCGGGCGCTCAGCCAGCCAAAGGGGCGGGATGCCCAAGCCGAGGATAGACCGGGTCC
* *
4618006 CCCTCTGAGTGCTACCGATCCTGCTGCCACAACCCTCAATCCCGTCCTATCT
832 CCCTCTGAGTGCTACCGATCCTGCTACCACAACCCTCAATCCCGTCCGATCT
* * *
4618058 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGA---GCAGGCGGGCGGCCAC
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGGCGGGCGGGCGGGCAC
* *
4618120 TATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGTA
66 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTA
* *
4618185 CATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCTTTA
131 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC-TTA
* * * * *
4618250 AGCCTTCACGTGAAGTTTCATGCCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAACTTT
195 AGCCTTCACGTGAAGTTGCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * * *
4618315 CTGCGGTTTGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGA
260 TTACGGTTCGGGATTTTTTAAAATTTTTT-AGGAGGAGTTTTGGCCCCAAACTTGGTAGACATGA
* * * * *
4618380 TCCTTGTATTTTTGTTGGCGTGCAAAAAAAATTCAGTTAGAAACACGAAGTCTATAAGATTTTGT
324 TCCTTGTATTTTTGTTGGCGTGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * * *
4618445 GACCATCTCAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAGCCTGTAAAA
389 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
4618510 TCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGTGGGCCAATATAA
454 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
** * *
4618575 GGGCCAAGTACCAGCACCCATCGTATATCATGTGCGCACACCCCCCGGTC-CCCCCAATCGCTGG
519 GGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGTCACCCCCAATCGCCGG
* *
4618639 AATGCCAATGCTGCCGGTCAGGTTTTCTGGCGATGGTGCCCC-AGTGAAGAAAAATACGGCACCA
584 AA-GCCAATGCTGCCGGTCAGGTTTTC-GGCGATGGTGCCCCGA-CGAAGAAAAATACAGCACCA
* *
4618703 ACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCC-GGTCTAATCTTAGACTGGGAA
646 ACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCCAGTTC-AATCTTAGACTGGGAA
** * *
4618767 TGAACTTTGTATGCTTAGAATGGAAATGAACTCCATATGCTTAAGTCAACCCACGAAACGAGCCT
710 TGAACTCCGTATGCTTAGAATGGAAATGAACCCCATATGCCTAAGTCAACCCACGAAACGAGCCT
* * ** * * * *
4618832 GCGGGCGCTCAGCCGGCCAAAGGGGTGGGATGCGTAAGCCGGGGATAGGCCGGGTTCCCCTCTGC
775 GCGGGCGCTCAGCCAGCCAAAGGGGCGGGATGCCCAAGCCGAGGATAGACCGGGTCCCCCTCTGA
* *** * **
4618897 GTGCTATCGATCCTGCTACTGTAACCCTCGATCTGGTCCGATCT
840 GTGCTACCGATCCTGCTACCACAACCCTCAATCCCGTCCGATCT
*
4618941 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGTTGGGGGCGGGCGGGCGG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GGGGCGGGCGGGCGG
* *
4619006 GCACTACGCCGACCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
62 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * *
4619071 GGTAGATCTTCATATTTCTGCATGCCAATGCCATTTTTACGGCTTGTAAATTCATACAATTGTGC
127 GGTACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-C
4619136 CTTAAGCCTTCACGTGAAGTTGCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
191 CTTAAGCCTTCACGTGAAGTTGCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * * *
4619201 CTTTTTCCGGTTCGGGATTTTTTTAAATTTTTTTGGATGCATTTTTGGCCCCAAACTTGGTAGAC
256 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTAGGA-GGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
4619266 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
320 ATGATCCTTGTATTTTTGTTGGCGTGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
4619331 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTGACAC-TTAATGGCTACTGGCAGCAAACCTG
384 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
4619395 TAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAA
449 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * *
4619460 GATGAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGG-CACCCCCGATC
514 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGTCACCCCCAATC
* * * *
4619524 ACCGGAACCCCAATGCTGCCAGTTAGGTTTTCCGGCGAT
579 GCCGGAA-GCCAATGCTGCCGGTCAGGTTTT-CGGCGAT
4619563 ACTCTGACGA
Statistics
Matches: 1322, Mismatches: 160, Indels: 47
0.86 0.10 0.03
Matches are distributed among these distances:
879 6 0.00
880 6 0.00
881 7 0.01
882 11 0.01
883 275 0.21
885 18 0.01
886 182 0.14
887 265 0.20
888 1 0.00
889 3 0.00
890 436 0.33
891 112 0.08
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (883 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGGCGGGCGGGCGGGCAC
TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTA
CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTAA
GCCTTCACGTGAAGTTGCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
TACGGTTCGGGATTTTTTAAAATTTTTTAGGAGGAGTTTTGGCCCCAAACTTGGTAGACATGATC
CTTGTATTTTTGTTGGCGTGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
GCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGTCACCCCCAATCGCCGGAA
GCCAATGCTGCCGGTCAGGTTTTCGGCGATGGTGCCCCGACGAAGAAAAATACAGCACCAACACA
TGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCCAGTTCAATCTTAGACTGGGAATGAACT
CCGTATGCTTAGAATGGAAATGAACCCCATATGCCTAAGTCAACCCACGAAACGAGCCTGCGGGC
GCTCAGCCAGCCAAAGGGGCGGGATGCCCAAGCCGAGGATAGACCGGGTCCCCCTCTGAGTGCTA
CCGATCCTGCTACCACAACCCTCAATCCCGTCCGATCT
Found at i:4622712 original size:26 final size:26
Alignment explanation
Indices: 4622676--4622728 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
4622666 CTGGTCTAAT
4622676 CTTAGACTGGGAATG-TACTCCGTATG
1 CTTAGACTGGGAATGAT-CTCCGTATG
4622702 CTTAGACTGGGAATGATCTCCGTATG
1 CTTAGACTGGGAATGATCTCCGTATG
4622728 C
1 C
4622729 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGATCTCCGTATG
Found at i:4624942 original size:899 final size:899
Alignment explanation
Indices: 4622584--4627175 Score: 6175
Period size: 899 Copynumber: 5.1 Consensus size: 899
4622574 TCTGACATGG
* ** *
4622584 TGCTCCGAC-ATGGTGCCCCGGTGAAGAAAAATGC-GACACCAGCATATGCTCGAGCCCAGCATG
1 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAG-CACCAGCATATGCCCGAGCCCAGCATG
* * * *
4622647 TGCTGTCGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGTACTCCGTATGCTTAGACTGG
65 TGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * * * *
4622712 GAATGATCTCCGTATGCCTAAGTCAACCCACGAAATGAACGTGTGGGCGCTCAGCTGGCTAGAGG
130 GAATGAACTACGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * *
4622777 GGCAGGATGCGCAAGCCGGGGATCTG-TCGGGTCCCCCTCTGCATGCTGCCGATCCTACTACCT-
194 GGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTGCCAATCCTACTA-CTG
* * *
4622840 CAACCCTCGGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
257 CAACCCTCGGTCCGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
4622905 ATGA--GCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
322 ATGAGCGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAAGCGCAAGCCGTGGATC
* * ***
4622968 GGTAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGC
387 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* *
4623033 TTGTAAATTCATACAATGGCCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
452 TTGTAAATTCATACAATGACCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* *
4623098 CTATTTTTCACGATTTTCAAAACTTTTTGCGGTTTGAGATTTTTTTAAATTTTTTCGGAAGGAGT
517 CTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGT
* *
4623163 TTTGGCCCAAAACTTGGTAGACGTGATCCCTGTGTTTTTTTT-GCCATGCATAAAAAAATTCAGC
582 TTTGGCCCAAAACTTGGTAGACGTGATCCCTGTATTTTTTTTCG-CATGCACAAAAAAATTCAGC
* *
4623227 TAAAAACTCGAAGTGTACGAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTT
646 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
4623292 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTTAAGG
711 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGG
*
4623357 TTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCTATCGCACATCATGTGCGC
776 TTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCACATCATGT--GC
* ** *
4623422 ACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATTCCATCACTCAGGTTCTCCGGCGG
839 ACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATTCCGTCGGTCAGGTTCTCCGGCGA
* * * * *
4623483 TGCTCCGACGATGGTGCCCCGACAAAGACAAATGCAACACCAGCATATGCCCGAGCCCAGCATGA
1 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCATATGCCCGAGCCCAGCATGT
* * * ** **
4623548 GCTGCCACAACCCTCGGTCCGGTCCAATCTTAGAGTTGGAATGAACTTTGTATGCTTAGACTGCA
66 GCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
*
4623613 AATGAACTCCGTATGCCTAAGGCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
131 AATGAACTACGTATGCCTAA-GCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * *
4623678 GCGGGATGCGCAAGTCGGGGATCGACTGAGTCCCCCTCTGCGTGCTGCCAATCCTACTACTGCAA
195 GCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCAATCCTACTACTGCAA
*
4623743 CCCTCGGTCCGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCAAACCGACGAAATG
260 CCCTCGGTCCGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATG
* * *
4623808 -G-GCGGGCGGGCGGGCGGGCACTATGCCGGCCAGAGAAACGGGAAGTGCAAGCCGTGGATCGAT
325 AGCGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAAGCGCAAGCCGTGGATCGAT
* * * * * * *
4623871 AGGTTGGTAGGTGCGCTTAGGCACATCTTCAAATTTCTACATACCAATGCCATTTTCATGGCTTG
390 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
* * * * *
4623936 TAAATTCATACAATG-GCCCTTACGCCTTCACGTGAAGCTTCATGGCAAGATGACTGGTTTTCTA
455 TAAATTCATACAATGACCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * *
4624000 TTTTTCACGATTTTCAAAACTTTTTGCGGTTTGTGATTTTTTAAAATTTTTTCGGAAGGACTTTT
520 TTTTTCACGATTTTCAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* * * * *
4624065 GGCCCTAAAGTTGGTAGATGTCATCCCTATATTTTTTTTCGCATGCACAAAAAAATTCAGCTAAA
585 GGCCCAAAACTTGGTAGACGTGATCCCTGTATTTTTTTTCGCATGCACAAAAAAATTCAGCTAAA
* *
4624130 AAGTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
650 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * *
4624195 GCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTATGATTTCTTGAGGTTTG
715 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTG
*
4624260 ATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCCCACATCATGTGCACACCC
780 ATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACCC
* * *
4624325 CCCCGGCCCCCCCGATTGCCGGAACCCCAATTCCGTCGGTCAGGTTCTCCGGTGA
845 CCCCGGCCCCCCCGATCGTCGGAACCCCAATTCCGTCGGTCAGGTTCTCCGGCGA
* *** * *
4624380 TGCTACTGGCGATGGTGCCTTTACGAAGAAAAATGCAGCACCAGCATATGCCCGAGGCCAGCGTG
1 TGCT-CCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCATATGCCCGAGCCCAGCATG
* * * * *
4624445 -GCTGCCGCAACCCTCCGTCCAGTCCGATCTTGGACTGGGAATGAACTCCGTATGCTTAGATTGG
65 TGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
4624509 GAATGAACTACGTATGCCTAAAGCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
130 GAATGAACTACGTATGCCT-AAGCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* *
4624574 GGCGGGATGCGCAAGCCGGGGATCGGCTGGGT-CCCCTCTGCGTGCTGCCAATCCTGCTACTGGA
194 GGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCAATCCTACTACTGCA
* *
4624638 ACCCTCGGTCTGGTCCTATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAAT
259 ACCCTCGGTCCGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAT
* * *
4624703 GAGCGGGTGGGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGAAGCGCAAGCCATGGATC
324 GAGC--GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAAGCGCAAGCCGTGGATC
*
4624768 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGC
387 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
4624833 TTGTAAATTCATACAATGACCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
452 TTGTAAATTCATACAATGACCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* *
4624898 CTATTTTTCACAATTTTCAAAA-TTTTTACGGTTCT-AGA-TTTTTAAAATTTTTTTC-GAAGGC
517 CTATTTTTCACGATTTTCAAAACTTTTTACGGTT-TGAGATTTTTTAAAA-TTTTTTCGGAAGGA
* * * *
4624959 GTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTGTTTTTGGCATGAACAAAAAAATTCAG
580 GTTTTGGCCCAAAACTTGGTAGACGTGATCCCTGTATTTTTTTTCGCATGCACAAAAAAATTCAG
* *
4625024 CTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTG
645 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
4625089 TAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATTCTCTTTAAGGGGATGTGAGTTCTTGAG
710 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAG
*
4625154 GTTTGATGAGGGATAGAGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCA
775 GTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG--
* * * * * *
4625219 CACACCCCCCTCGACCCTCCCGATCGTCAGAACCCCAATTTCG-CTAGTCAGGTTCTCCGACGA
838 CACACCCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATTCCGTC-GGTCAGGTTCTCCGGCGA
* * * *
4625282 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCCGCACCAACATATGCCCGAGCCCAGCATGA
1 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCATATGCCCGAGCCCAGCATGT
4625347 GCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTA----T-G-C----
66 GCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
*
4625402 ------CTA---A-G--T---CAACCCACGAAACGAGCGTGCGGGGCGCTCAGCCAGCCAGAGGG
131 AATGAACTACGTATGCCTAAGCAACCCACGAAACGAGCGTGC-GGGCGCTCAGCCGGCCAGAGGG
* * * * *
4625452 GCGGGATACGCAAGCCGGGGATCAGCTGGGTCCCCCTCTACATGCTGCCAATCCTACT-GTGGCA
195 GCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCAATCCTACTACT-GCA
* * * * * **
4625516 ACCCTCCGTCCGGTCCTATCTTAGACTAGGAAGGAACTCCGTATACCTAAGGCAGTCGAC-AAA-
259 ACCCTCGGTCCGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAT
* * * * *
4625579 -A-C-TGAGCGGGCGGGCGGGCAGTACGCCAGCTAGAGAGACGGGAAGCGCAAGCCGTGGATCGA
324 GAGCGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAAGCGCAAGCCGTGGATCGA
*
4625641 TAGGGTGGTAGGTGGGTTTAGGCACAT-TTCGTATTTCTGCATGCCAATGCCATTTTTATGGCTT
389 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* * *
4625705 GTAAATTCATACAATGATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTTGATTTT-
454 GTAAATTCATACAATGACCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG-TTTTC
* * * * * *
4625769 TATTTTTCACGATTTTTAAAACTTTTTTCAGTTTGGGATTTTTAAAAAATTTTTCGGAAGGAGTT
518 TATTTTTCACGATTTTCAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTT
*
4625834 TTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTTTTCGCATGC-CAAAAAAATTCAGCTA
583 TTGGCCCAAAACTTGGTAGACGTGATCCCTGTATTTTTTTTCGCATGCACAAAAAAATTCAGCTA
*
4625898 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAA
648 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
4625963 AGGCTACTGGCAGCAAATCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
713 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTT
* * * *
4626028 TGATGAGAGATAGGGGGCAAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCAC
778 TGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCACATCATGT--GCAC
* * * * *
4626093 ACCCCACCCCTGGCCCCCTCGATCGTCGGAACCCCAATGCAGCCGGTCAGGTTCTCCGGTGA
841 A-CCC-CCCC-GGCCCCCCCGATCGTCGGAACCCCAATTCCGTCGGTCAGGTTCTCCGGCGA
* * * * *
4626155 TGCTCCAGCGATGGTCCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
1 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCATATGCCCGAGCCCAGCATGT
* * * *
4626220 GCTGTCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
66 GCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * * *
4626285 AATGAACT-CTGTATGCCTAAGTTAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGACAAAAGG
131 AATGAACTAC-GTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * ** * ** * *
4626349 GGCGGGATGCGCAAGCTGAGGATCGGTTGGGTCCCCTTCTGTGTGCTGCTGATCTTGTTGCCGCA
194 GGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCAATCCTACTACTGCA
* * * * *
4626414 ACCCTCAGTCCGAT-CTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAG-CAACCGACGGAT
259 ACCCTCGGTCCGGTCCT-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
** * * * *
4626477 TGAGCAAGCGGGTAGGCGGGCGGGCACTACGTCGGACAGAGAGACGGGATGCGCAAGCCATGGAT
323 TGAGC--GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAAGCGCAAGCCGTGGAT
* *
4626542 CGATAGGGTGGTAGGTGGG-TTAGGCTCATCTTCATATTTCTGCATGCCAGTGCCATTTTTATGG
386 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
** *
4626606 CTT-TGAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTAGTT
451 CTTGT-AAATTCATACAATGACCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
4626670 TTCTATTTTTCACGATTTTCAAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGA
515 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGA
* ** * * * *
4626735 GTTTTTGCCCTGAACTTGGTAGACTTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
580 GTTTTGGCCCAAAACTTGGTAGACGTGATCCCTGTATTTTTTTTCGCATGCACAAAAAAATTCAG
* * *
4626800 CTAAAAACTCGAAGTGTACAACATTTTGTGAACATTTGAAAAAAGTGTCCCCATTTCAAACACTT
645 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
4626865 TAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTTGAG
710 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAG
* *
4626930 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCC
775 GTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCA
* * * * ** * * * **
4626995 CACATCCCCCAGCCCCCCTGATCGCCAAAACCCTAATGT-TGTTGGTCAGGTTCTCCAACGA
840 CAC-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT-TCCGTCGGTCAGGTTCTCCGGCGA
* * * *
4627056 TGCTCCGGCGTTGGTGCCCCGACGATGAAAAATGCGGCACCAGCATATGCCCGAGCCTAGCATGT
1 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCATATGCCCGAGCCCAGCATGT
* ** * * *
4627121 GCTGCCACAACCCTCACTCCGGTCCGATCTTAGATTGAGAATGAACTCCGTATGC
66 GCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
4627176 CTAAGTCAAC
Statistics
Matches: 3255, Mismatches: 361, Indels: 152
0.86 0.10 0.04
Matches are distributed among these distances:
870 111 0.03
871 297 0.09
872 63 0.02
873 148 0.05
874 2 0.00
875 1 0.00
876 21 0.01
877 55 0.02
878 77 0.02
879 1 0.00
880 1 0.00
882 1 0.00
883 1 0.00
886 3 0.00
889 2 0.00
892 1 0.00
893 1 0.00
895 1 0.00
896 93 0.03
897 212 0.07
898 161 0.05
899 621 0.19
900 550 0.17
901 269 0.08
902 98 0.03
903 19 0.01
904 252 0.08
905 193 0.06
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (899 bp):
TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCATATGCCCGAGCCCAGCATGT
GCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
AATGAACTACGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
CGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCAATCCTACTACTGCAAC
CCTCGGTCCGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGA
GCGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAAGCGCAAGCCGTGGATCGATA
GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGACCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCACGATTTTCAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
GCCCAAAACTTGGTAGACGTGATCCCTGTATTTTTTTTCGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA
TGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACCCC
CCCGGCCCCCCCGATCGTCGGAACCCCAATTCCGTCGGTCAGGTTCTCCGGCGA
Found at i:4626277 original size:26 final size:26
Alignment explanation
Indices: 4626248--4626300 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4626238 CCGATCCGAT
4626248 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4626274 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4626300 C
1 C
4626301 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4627451 original size:159 final size:159
Alignment explanation
Indices: 4627122--4627516 Score: 431
Period size: 159 Copynumber: 2.5 Consensus size: 159
4627112 CTAGCATGTG
** * *
4627122 CTGCCACAACCCTCACTCCGGTCCGATCTTAGA-TTGAGAATGAACTCCGTATGCCTAAGTCAAC
1 CTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTTG-GAATGAACTCTGTATGCCTAAGTCAAC
* * * * * * *
4627186 CCACAAAACAAGCGCGCGGGGGCTCAGCCGACCAGAGGGGCGGGATGCAAAAGTAGTGGATCGAT
65 CGACAAAACGAGCGCGCGGGCGCTCAGCCGACCAGAGGGGCGAGATGCAAAAGCAGTGGATCAAC
*
4627251 CGAGTCCCCCTCTGCGTGCTGTCGATCCTG
130 CGAGTCCCCCTCTGCGTGCTGTCGATCCTA
* * * *
4627281 CTGCTACAACCCTCGGTCTGGTCTGATCTTAGACTTGGAATGAGCTCTGTATGCCTAAGTCAACA
1 CTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTTGGAATGAACTCTGTATGCCTAAGTCAACC
* * * ***
4627346 GACGAAACGAGCGTGCGGGCGCTCAGCC-AGCCAGAGTGGCGAGATGTGCAAGCCAG-GGATCAA
66 GACAAAACGAGCGCGCGGGCGCTCAGCCGA-CCAGAGGGGCGAGATGCAAAAG-CAGTGGATCAA
*
4627409 CCGGGTCCCCCTCTGCGTGCTGTCGATCCTA
129 CCGAGTCCCCCTCTGCGTGCTGTCGATCCTA
** * ** * * *
4627440 CTGCCGTAACCCTTGGTCCCATCCT-ATCTTAGACTAGGATTGAACT-TCGTATGCCTAAGCCAA
1 CTGCCACAACCCTCGGTCCGGT-CTGATCTTAGACTTGGAATGAACTCT-GTATGCCTAAGTCAA
4627503 CCGACAAAACGAGC
64 CCGACAAAACGAGC
4627517 AGGCAGGCGG
Statistics
Matches: 195, Mismatches: 36, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
158 2 0.01
159 186 0.95
160 7 0.04
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (159 bp):
CTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTTGGAATGAACTCTGTATGCCTAAGTCAACC
GACAAAACGAGCGCGCGGGCGCTCAGCCGACCAGAGGGGCGAGATGCAAAAGCAGTGGATCAACC
GAGTCCCCCTCTGCGTGCTGTCGATCCTA
Found at i:4629192 original size:26 final size:26
Alignment explanation
Indices: 4629163--4629215 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
4629153 CCGGTCCGAT
4629163 CTTAGACTAGG-AATGAACTCCGTATG
1 CTTAGACT-GGTAATGAACTCCGTATG
4629189 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGTAATGAACTCCGTATG
4629215 C
1 C
4629216 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACTCCGTATG
Found at i:4630094 original size:26 final size:26
Alignment explanation
Indices: 4630065--4630117 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4630055 CCGATCCGAT
* *
4630065 CTTAGACTGGGAATGATCTCTGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
4630091 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
4630117 C
1 C
4630118 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:4630922 original size:907 final size:897
Alignment explanation
Indices: 4628756--4631187 Score: 3377
Period size: 907 Copynumber: 2.7 Consensus size: 897
4628746 ATTGACCTCG
*
4628756 GAAGGAGTTTCGGCCCCAAACTTGGTAGTCGTGATCCTTGTATTTTTGTTGGCATGC------A-
1 GAAGGAGTTTTGGCCCCAAACTTGGTAGTCGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAT
*
4628814 -C--CAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAC
66 TCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGAC
* * * *
4628876 ACTTTAATGGCTACTGGCAGCAAACTTGTAAAATTTCAAATGCTCTTTATGGGGGTGTGAGTTTT
131 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
4628941 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCTTG
196 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
**
4629006 TGCGCACA-CCCCTCGGC-CCCCCGATCTTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGACG
261 TGCGCACACCCCCT-GGCACCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGACG
* * * * * *
4629069 ATGCTCCGATGATGGTGCCCCGGTGAACAAAAATACGACACCAGTAAATGCCCGAGCGCACCATG
325 ATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCCGAGC-CAACATG
* * * *
4629134 TGCTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGG
389 TGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGG
* * * *
4629199 TAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGG
454 GAATGAACTCAGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGCCAGAGG
* * * * * * * **
4629264 TAGGGGATGCGCAAGTCGGGGATCGATGGGGTCCCTCTCTGCGTGCTGCCGATCCTACTGCCGTG
519 -GGGGGATGCGCAAGCCGAGGATCG-TCGGGTCCCCCTCTACGTGCT-ACGATCCTACTGCCGCA
* * * * * * *
4629329 ACCCTCGGTCCGGTCTGATCATAGACTAGGACTGATCTCTGTATGACTAAGCCAAACGATGAAAC
581 ACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAAC
* * * *
4629394 GAGCGGGCGGGCGGGCGGACGGGCACTACACCGGCCAGAGAAGCGGGATGCGCAAGCCGTGGATC
646 GAGCGGGCGGGCGGGCGGAAGGGCACTACACCGACCAAAGAAGCGGGATGCGCAAGCCGCGGATC
* * *
4629459 GATAGGGCGGTAGGTGGGTTTAGGCACATCTTTATATTGCTGCATGCAAATGCCATTTTTGTGGC
711 GATAGGGCGGTAGGTGGGTTTAGGCACATCTTCATATTGCGGCATGCAAATGCCATTTTTATGGC
* * *
4629524 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
776 TTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGACCCGTTTT
* * * **
4629589 CTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGAATTTTTTAAAATTTTTTTG
841 CTATTTTTCAAGATTTTCAAAACTTTTTACAGTTAAGAATTTTTTAAAATTTTTTCA
* *
4629646 GAAGAAGTTTTGGCCCCAAACTTGGTAGTCGTGATCCTTGTACTTTTGTTGGCATGCACAAAACA
1 GAAGGAGTTTTGGCCCCAAACTTGGTAGTCGTGATCCTTGTATTTTTGTTGGCATGCA-AAAA-A
* * *
4629711 ATTCAGCCAAAAACTCGAAGTGGACAAGA-TTTGTGACCATTTGAAAAAAGTGTCCCTATTTAAG
64 ATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAG
*
4629775 ACACTTCAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
129 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
4629840 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCA
194 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
4629905 TGTGCACACACCCCCCGGCACCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTC-CAT
259 TGTGCGCACACCCCCTGGCACCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGA-
* * * * * * *
4629969 CGATGCACTGGCGATGGTGCCCTGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCTAGCA
323 CGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCC-AACA
* *
4630034 TGTGCTGCCGTAACCCTCGATCCGATCCGATCTTAGACTGGGAATGATCTCTGTATGCTTAGACT
387 TGTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT
* *
4630099 GGGAATGAACTCAGTATGCCTAAGTTAACCCACGAAACGAGCGTGCAGGTGCTCAGCTGGCCAGA
452 GGGAATGAACTCAGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGCCAGA
* * * *
4630164 GGGGCGGGATACGCAAGCCGAGGATCAGTCGAGACCCCCTCTACGTGCTACGGATCCTACTGTCG
517 GGGG-GGGATGCGCAAGCCGAGGATC-GTCGGGTCCCCCTCTACGTGCTAC-GATCCTACTGCCG
** * *
4630229 CAACCCTCAATCTGGTCTGATCTTAGACTACGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
579 CAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAACGACGAA
***
4630294 ACGAGCGGGCGGGTGGGCGGGCGGAAGGGCACTATGTCGACCAAAG-AGACGGGATGCGCAAGCC
644 ACGAGCGGGC----GGGCGGGCGGAAGGGCACTACACCGACCAAAGAAG-CGGGATGCGCAAGCC
* * *
4630358 GCGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCGGCATGCCAATGCCATTT
704 GCGGATCGATAGGGCGGTAGGTGGGTTTAGGCACATCTTCATATTGCGGCATGCAAATGCCATTT
* *
4630423 TTATGGTTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTCGCAAGACGAC
769 TTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGAC
** *
4630488 CCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTATAGTTAATG-ATTTTTTAAAATTTTTTCA
834 CCGTTTTCTATTTTTCAAGATTTTCAAAACTTTTTACAGTTAA-GAATTTTTTAAAATTTTTTCA
* *
4630552 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTCGGCATGCATAAAAAA
1 GAAGGAGTTTTGGCCCCAAACTTGGTAGTCGTGATCCTTGTATTTTTGTTGGCATGC--AAAAAA
* * * * *
4630617 ATTCAGCTAAAAACTTGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAG
64 ATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAG
*
4630682 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTT
129 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
4630747 CTCGAGGTTTGAT-AGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
194 CTCGAGGTTTGATGA-GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
4630811 ATGTGCGCACACCCCCTGGCACCCCCGATCACCGCAACCCCAATGCCGTCGGTCAGGTTCTCTGG
258 ATGTGCGCACACCCCCTGGCACCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGA
*
4630876 CGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCCAAGCCCAACA
323 CGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCCGAG-CCAACA
* * * ** * *
4630941 AGTGCTGCCGCAACCCTCGGTCTGATATGATCTTAGACTGAGAATGAACTCTGTATGCTTAGATT
387 TGTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT
* * * * *
4631006 GGGAATGAACTCTGTATGCCTAAGTCAACCCAGGAAATGAGCGTACGGGCGCTCAGCTGGCCAGA
452 GGGAATGAACTCAGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGCCAGA
* * * * * *
4631071 GGGGTGGGATGCGCAAGCCAAGGATCTGCCGGGTTCCCCTCTACGTGCTGTCGATCCTGCTGCCA
517 GGGG-GGGATGCGCAAGCCGAGGATC-GTCGGGTCCCCCTCTACGTGCT-ACGATCCTACTGCCG
*
4631136 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCCGTATGCCTA
579 CAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAAC-TCCGTATGCCTA
4631188 TACCGTGGAT
Statistics
Matches: 1355, Mismatches: 154, Indels: 48
0.87 0.10 0.03
Matches are distributed among these distances:
890 54 0.04
898 1 0.00
900 1 0.00
901 171 0.13
902 343 0.25
903 1 0.00
905 2 0.00
906 293 0.22
907 473 0.35
908 16 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (897 bp):
GAAGGAGTTTTGGCCCCAAACTTGGTAGTCGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAT
TCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCTGGCACCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGACGA
TGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCAACATGTG
CTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGA
ATGAACTCAGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGCCAGAGGGG
GGGATGCGCAAGCCGAGGATCGTCGGGTCCCCCTCTACGTGCTACGATCCTACTGCCGCAACCCT
CGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAACGAGCG
GGCGGGCGGGCGGAAGGGCACTACACCGACCAAAGAAGCGGGATGCGCAAGCCGCGGATCGATAG
GGCGGTAGGTGGGTTTAGGCACATCTTCATATTGCGGCATGCAAATGCCATTTTTATGGCTTCTA
AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGACCCGTTTTCTATT
TTTCAAGATTTTCAAAACTTTTTACAGTTAAGAATTTTTTAAAATTTTTTCA
Found at i:4631001 original size:26 final size:26
Alignment explanation
Indices: 4630972--4631024 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4630962 CTGATATGAT
4630972 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
* *
4630998 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
4631024 C
1 C
4631025 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCTGTATG
Found at i:4631850 original size:26 final size:26
Alignment explanation
Indices: 4631821--4631873 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4631811 CTAATCTGAT
4631821 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
* *
4631847 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
4631873 C
1 C
4631874 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCTGTATG
Found at i:4631982 original size:849 final size:850
Alignment explanation
Indices: 4630355--4635987 Score: 4385
Period size: 849 Copynumber: 6.4 Consensus size: 850
4630345 GGATGCGCAA
* ** *
4630355 GCCGCGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCGGCATGCCAATGCCA
1 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCTTGCCAATGCCA
* * * *
4630420 TTTTTATGGTTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGT-CGCAAGA
66 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGC-CGAGA
* * *
4630484 CGACCCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTATAGTTAATGATTTTTTAAAA-TTTT
130 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAT-GTTCATGATTTTTTAAAATTTTT
* * *
4630548 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTCGGCATGCATAA
194 TTGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAA
* *
4630613 AAAAATTCAGCTAAAAACTTGAAA-TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAA
257 AAAAATTCAGCTAAAAAC-TCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
4630677 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGT
321 TTCAGACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
4630742 GAGTTCTCGAGGTTTGAT-AGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
386 GAGTTCTCGAGGTTTGATGA-GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * *
4630806 ACATCATGTGCGCACACCCCCTGGCACCCCCGATCACCGCAACCCCAATGCCGTCGGTCAGGTTC
450 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
* * *
4630871 TCTGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCCAAGCC
515 TCCGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * *
4630936 CAACAAGTGCTGCCGCAACCCTCGGTCTGATATGATCTTAGACTGAGAATGAACTCTGTATGCTT
580 CAGCAAGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGAGAATGAACTCTGTATGCTT
* * * * *
4631001 AGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCAGGAAATGAGCGTACGGGCGCTCAGCTGG
645 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGG
* * *
4631066 CCAGAGGGGTGGGATGCGCAAGCCAAGGATCTGCCGGGTTCCCCTCTACGTGCTGTCGATCCTGC
710 CCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCGGGTTCCCCTCTACGTGCTGTCGATCCTGC
* * * * *
4631131 TGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCCGTATGCCTA-TACCG-T
775 TGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAAC-TCCGTATACCTACAACCGAC
4631194 G-GATGC-GTAT
839 GAGATGCGGTAT
*
4631204 GCCGTGGATCGATAGGGTTGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCTTGCCAATGCCA
1 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCTTGCCAATGCCA
*
4631269 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCATGCCGAGAC
66 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCGAGAC
* * *
4631334 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGTGCTTCAGGATTTTTTAAAATTTTTT
131 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATG-TTCATGATTTTTTAAAATTTTTT
* *
4631399 TGAAAGGAGTTTTGGCCCCAAACTGGGTAGACGTAATCCTTGTATTCTTTTTGGCATGCACAAAA
195 TGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT-TTTTTGGCATGCACAAAA
*
4631464 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTC
259 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * * *
4631529 AGACACTTTAATGGCTACTAGTAGAAAACCTGTAAAATCTCAAATACTCTTTAATGGCGTGTGAG
324 AGACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
4631594 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
389 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
4631659 CATGTCCGCACACCCCCCGGCCCCCCCGATCGCCGTAACCCAAATGCCGCCGGTCAGGTTCTCCG
454 CATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
*
4631724 GCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGC
519 GCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* ** *
4631789 AAGTGCTGCCGCAACCCTCTGTCTAATCTGATCTTAGACTGAGAATGAACTCTGTATGCTTAGAT
584 AAGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGAGAATGAACTCTGTATGCTTAGAC
*
4631854 TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAG
649 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAG
* *
4631919 AGGGGTGGGATGCGCAAGCCAAGGATCGGCCGGGTTCCCCTCTACGTGCTGTCGATCCTGCTGCC
714 AGGGGCGGGATGCGCAAGCCAGGGATCGGCCGGGTTCCCCTCTACGTGCTGTCGATCCTGCTGCC
* * * *
4631984 ACAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATAACTATGCCAACCGACGA
779 GCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTA---CAA-C--CG-
4632049 AACGAGCGGGCGGGCGGGCACTACATCGGCCAGAGAGACTGGATGCGT
837 -ACGA------------G------AT--G-C---G-G--T--A----T
* * * *
4632097 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCTTGCCAATAC
1 --GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCTTGCCAATGC
* *
4632162 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCATGGCGAG
64 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCGAG
* * * *
4632227 ACGACTCGTTTTCTATTTTTCACTATTTTTGAAAATTTTTACGCTTCAGGATTTTTTAAAA-TTT
129 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATG-TTCATGATTTTTTAAAATTTT
* * ** * *
4632291 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGAATCCGTGATCCTTGTATTTGTGTTGGCATGCAAA
193 TTTGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT-TTTTGGCATGCACA
**
4632356 AAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAACA-TGTCCCCA
256 AAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAA-AGTGTCCCCA
* *
4632420 TTTCAGACACATTAATGGCTACTGGCA-ACAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGT
320 TTTCAGACACTTTAATGGCTACTGGCAGA-AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
4632484 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA
384 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * *
4632549 CACATCATAT--GCACACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAAGTT
449 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTT
* ** ** *
4632612 CTCCGGCCATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATAAGGCATCAGCACATGCCCGAGC
514 CTCCGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* ** ** ** *
4632677 CCAGCATGTTTTGCCATAACCCTCGGTCCAGT-TCGATCTTAGACTGGGAATGAACTCTCCGTAT
579 CCAGCAAGTGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGAGAATGAACTCT--GTAT
* *
4632741 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGCTCAG
641 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
4632806 -TCGGCCAGAGGGGCGAGATGCGTAAGCCGGGGATCGGTCGGG-TCACCTTCTGCGTGCTGCCGA
706 CT-GGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCGGGTTC-CCCTCTACGTGCTGTCGA
* * *
4632869 TCCTGCTGGCGTAACCTTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGC
769 TCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATACCT-A--
* ***
4632934 CAACCGACGAAATGAGCGGGCGG
831 CAACCGACGAGAT--GC-GGTAT
** *** ** * **
4632957 GCGGGCG-GGCACTACGCCAGCCAGAG-AGACGGG-AT-GCGCAAGCAGTGGATCGATAGGGTTG
1 GC---CGTGG-A-T-CGATAGGGTG-GTAGGTGGGTTTAG-GC-A-CA-T-CTTC-ATA---TT-
* * * * * * ** * **
4633018 TAGGTGGGTTTAGGCACAT-CTTCATATTTCTA-CG-TT-TCAATACCATTTTTATTGCTTGTAA
49 T---T-TGCTT-GCCA-ATGC--CAT-TTT-TATGGCTTGTAAAT-TCA--TACAATG---GTCC
* * * * * * * * * * * *
4633079 ATTCATA-CGATGGTC-CCTTAGGCCTTCACG-TGAAGTTTTATGGCTAGACGACTCGTTTTCTA
98 CTT-A-AGC-CT--TCACGTGAAG-TTTCATGCCG-AG----ACGACT---CG--T-TTTCT--A
* ** ** * **
4633141 TTTTTCATGA-TTTTGAAACTTTTTGCGGTTTTTGATTTTTTTAAATTTTTCAG-AAGGAGTTTT
144 TTTTTCACGATTTTTGAAACTTTTT-ATGTTCATGATTTTTTAAAATTTTTTTGAAAGGAGTTTT
*
4633204 GGCCCCATACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
208 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAA
* * *
4633269 AACTCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCGCATTTCAGACACTTTAATG
272 AACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * * * * *
4633334 GCTACTGGCAGCAAACCTATAAAATCTCAATTGCTTTTTATGAGGGTGTGAGTTCTCGAGGTTTG
337 GCTACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
*
4633399 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAC
402 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * **
4633464 CCCCCGGCCCTCCTGATCATCGGAACCCCAA---------T---G-----C--C---G-TCCGAC
467 CCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGAC
* *
4633506 GATGGTGCCCCGACT-AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATA-TGCTGCTG
532 GATGGTGCCCCG-GTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA-AGTGCTGCCG
* * * *
4633569 CAACTCTCGGTCTGGTCTGTTCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
595 CAACCCTCGGTCTGGTCTGATCTTAGACTGAGAATGAACTCTGTATGCTTAGACTGGGAATGAAC
* * ** * *
4633634 TCGGTATGCCTAAGTCAAGCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCAGAAGGGCGGGAT
660 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGAT
* * * * * *
4633699 GCGCAAGCCGGGGATCGACTGAGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCAA
725 GCGCAAGCCAGGGATCGGCCGGGTTCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCAG
* * * *
4633764 TCCT-ATCTGATCTTAGACT-GGAATGAACTCCATATGCCTAAGCCAACCGACGGAACTAGCGGT
790 T-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATACCT-A--CAACCGAC-G----A--GAT
4633827 CGGGCGGGTGAGCGGGCACT
844 ---GC-GGT--------A-T
* * * * ****
4633847 ACACGGCCAGAGAGACGGGTTACGCA-AGCCGTGGATCGATAGGGTTGTAGGTGGGT-TTCGGCA
1 -----GCC-GTG-GA-----T-CG-ATAG-GGTGG-TAGGT-GGGTT-TAGGCACATCTT---CA
* ** **
4633910 CATCTTCATATTTTTGCAAGCCAATGAGATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
45 TAT-TT--T-TGCTT----GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * **
4633975 AGCCTTCACGTGAAGTTTCATGGC-AAAGCGACTCGTTTTCTATTTTTCATAATTTTTGAAACTT
102 AGCCTTCACGTGAAGTTTCATGCCGAGA-CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * * *
4634039 TTTACTGTTCATGATTTTTTAAAATTTTTTTGGAAGAAGCTTTGGCCCAAAACTTGGTAGACGTG
166 TTTA-TGTTCATGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* *
4634104 ATCCTTGTATTTTTTTTGGTATGCACAAAAAAATTCGGCTAAAAACTCGAAA-TGTACAAGATTT
230 ATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC-AAAGTGTACAAGATTT
* *
4634168 TGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTA
293 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGAAAACCTGTA
* *
4634233 AAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTCGAGGTTTGATGAGGGATAGGGTGCCAATA
358 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * *
4634298 TAAGGGCCAAGTACCAGCACCCATCGGACATCATGTGCGCACACCCGCCGGCCCCTCCGATTGCC
423 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCC
** ** * **
4634363 GGAACCGTAATGCTACCGGTCAGGTTCTCCGGCGATGCTCC-AGCGGTGGTGCCCCGACGAAGAA
488 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGA-CGATGGTGCCCCGGTGAAGAA
* * * * * * *
4634427 AAGTGAGGCACCAGCACATGCCCGAGCCTAACATGTGCTGCCGTAACCCTCGGTCCGGTCTGATC
552 AAATGCGGCACCAGCACATGCCCGAGCCCAGCAAGTGCTGCCGCAACCCTCGGTCTGGTCTGATC
* *
4634492 TTAGACT-AGGAATGAACT-TCGTATGCTTAGACTGTGAATGAACTCCATATGCCTAAGTCAACC
617 TTAGACTGA-GAATGAACTCT-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * *
4634555 CACCAAACGACCCTGCGGGCGCTCAGCTAGCCAAAAGGGCGGGATCCGCAAGCCAGGGATCGGCC
680 CACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCC
* *
4634620 GGG-T-CCC-C--C-T-CTGT-G----TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGATTG
745 GGGTTCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTG
* *
4634673 GGAATGAACTCCGTATACCTAAGCCAACCAACGAAACGA-GCGG-ACGG
810 GGAATGAACTCCGTATACCT-A--CAACCGACG--A-GATGCGGTA--T
* * * * ** * * ** *
4634720 GCGGGCGGA-CGGGCTCTACGCCGGCCAGAGAGGCAGGAT-GCGCA-AGCCGTGGATCGATAGGG
1 GC-CGTGGATC--G--ATAGGGTGG-TAG-GTGG--GTTTAG-GCACA-TC-T---TC-ATA---
** * * * * * ** * *** *
4634782 TGGTAGGTGGGTTTAGGCACAT-CTTCATATTTCT-GCATGCCAATGCCATTTTTATGG--CTTG
47 T--T---TTTGCTT-GCCA-ATGC--CATTTTTATGGCTTGTAAAT-TCA-TACAATGGTCCCT-
* * * * * * * * ** ** **
4634843 TGAATTCGTACAATGGTC-CCTTAAGCCTTCACG-TGAAGTTTCATGGCAAGATGACTCGTTTTT
100 T-AA---G--C-CT--TCACGTGAAG-TTTCATGCCG-AG----ACGACTCG-T-TTTCTATTTT
* * * *
4634906 TCATGATTTTTGAAACTTTTTGAGGTTC-TGGATTTTTTAAAA-TTTTTTCAGAAGGATTTTTGG
148 TCACGATTTTTGAAACTTTTT-ATGTTCAT-GATTTTTTAAAATTTTTTTGA-AAGGAGTTTTGG
* * *
4634969 CCCCAAACTTAGTAGACGCGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAA
210 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAA
* * * * *
4635034 ATCAAAGTTTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCGCATTTCAGACACTTTAATAGC
274 CTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * * * *
4635099 TACTGGCAGCAAACCTGTAAAATCTCGATTGCTCTTTATGGGGGTGTGAGTTCTCAAGGTTTGAT
339 TACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * *
4635164 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCTCCCATCGGACATCATGTGCGTACACCC
404 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* ** * * * * * * * * *
4635229 CTCGGCCCCCCCGATCATCAGAACTCCAATGCTGCCAGTAAGGTTCTCCAGTGATCCT-CTAGCG
469 CCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGA-CG
* ** * * * * * *
4635293 ATGCTGCCCCGAG-GAAGAAAAATATGGCACCAGCACATGGCTGAGCCCAGGATGTGCTGCTGTA
533 ATGGTGCCCCG-GTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAAGTGCTGCCGCA
* *
4635357 A-CC-C--TC--G---G-TC-----C---G-AT---C-C-G-AT-CTTAGATTGGGAATGAACTT
597 ACCCTCGGTCTGGTCTGATCTTAGACTGAGAATGAACTCTGTATGCTTAGACTGGGAATGAACTC
* * * * * *
4635396 CGTATGCCTAAGTTAACCCACGAAACGAGCGTGAGGGCACTCAGCCGGCTAGAGGGGCGAGATGC
662 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGC
* * * * ** * *
4635461 GCAAGCCGGGGATCAGCCGGG-TCCCCATCTGCGTGTTG-CTGATCCTGCTATCGTAGCCCTCAG
727 GCAAGCCAGGGATCGGCCGGGTTCCCC-TCTACGTGCTGTC-GATCCTGCTGCCGCAACCCTCAG
* * *
4635524 TCTGGTCTGATCTTAGAATAGGAATGAACTCTGTATACCTAAGCCAACCGACAAAACGAGAGGGC
790 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATACCT-A--CAACCG-----AC--GA----
*
4635589 GGGCACTACGCCAGCCAGAGAGACGGGAT
841 --G-A-T--------------G-CGGTAT
* * **
4635618 GCACAAGCCCTGGATCGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTCACCA
1 GC-C--G---TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCTTGCCA
* * *
4635683 ATGCCATTTTTATGGCTTGTAAATTAATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
60 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGC
* * * * * **
4635748 CAAGACGACTCGTTTTTTATTTTTCACCATTTTTGAAACTTTCTACGGTTCGGGATTTTTTAAAA
125 CGAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA-TGTTCATGATTTTTTAAAA
* * *
4635813 TTTTTTCGGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCA
189 TTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCA
*
4635878 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA-CATTTTGAAAAAAGTGTCCC
254 CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAAGTGTCCC
* *
4635942 CATTTCAGACACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCT
318 CATTTCAGACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCT
4635988 TGAATGCACT
Statistics
Matches: 3871, Mismatches: 580, Indels: 651
0.76 0.11 0.13
Matches are distributed among these distances:
848 14 0.00
849 745 0.19
850 12 0.00
852 1 0.00
853 1 0.00
855 2 0.00
858 3 0.00
859 88 0.02
860 8 0.00
861 4 0.00
862 5 0.00
863 20 0.01
864 118 0.03
865 85 0.02
866 14 0.00
867 13 0.00
868 9 0.00
869 13 0.00
870 13 0.00
871 82 0.02
872 9 0.00
873 31 0.01
874 147 0.04
875 8 0.00
876 109 0.03
877 47 0.01
878 280 0.07
879 27 0.01
880 19 0.00
881 24 0.01
882 7 0.00
883 12 0.00
884 25 0.01
885 381 0.10
886 8 0.00
887 14 0.00
888 10 0.00
889 36 0.01
890 37 0.01
891 9 0.00
892 10 0.00
893 156 0.04
894 21 0.01
895 599 0.15
896 20 0.01
897 255 0.07
898 48 0.01
899 61 0.02
900 13 0.00
901 190 0.05
902 1 0.00
903 5 0.00
904 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (850 bp):
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCTTGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCGAGAC
GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGTTCATGATTTTTTAAAATTTTTTT
GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
GATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAA
GTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGAGAATGAACTCTGTATGCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAG
GGGCGGGATGCGCAAGCCAGGGATCGGCCGGGTTCCCCTCTACGTGCTGTCGATCCTGCTGCCGC
AACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTACAACCGACGAGATGC
GGTAT
Found at i:4632754 original size:28 final size:26
Alignment explanation
Indices: 4632714--4632768 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 26
4632704 CCAGTTCGAT
4632714 CTTAGACTGGGAATGAACTCTCCGTATG
1 CTTAGACTGGGAATGAA--CTCCGTATG
4632742 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4632768 C
1 C
4632769 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 10 0.37
28 17 0.63
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4633626 original size:26 final size:26
Alignment explanation
Indices: 4633590--4633642 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4633580 CTGGTCTGTT
4633590 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4633616 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4633642 C
1 C
4633643 CTAAGTCAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4634542 original size:26 final size:26
Alignment explanation
Indices: 4634491--4634543 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
4634481 CCGGTCTGAT
* *
4634491 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
4634517 CTTAGACT-GTGAATGAACTCCATATG
1 CTTAGACTAG-GAATGAACTCCATATG
4634543 C
1 C
4634544 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:4635275 original size:885 final size:887
Alignment explanation
Indices: 4633500--4635987 Score: 2875
Period size: 885 Copynumber: 2.8 Consensus size: 887
4633490 CCCAATGCCG
*
4633500 TCCGACGATGGTGCCCCGACT-AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATATGC
1 TCCG-CGATGGTGCCCCGA-TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * *
4633564 TGCTGCAACTCTCGGTCTGGTCTGTTCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
64 TGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * * *
4633629 TGAACTCGGTATGCCTAAGTCAAGCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCAGAAGGGC
129 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * *
4633694 GGGATGCGCAAGCCGGGGATCGACTGAGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACC
194 GGGATGCGCAAGCCAGGGATCGGCCGGGT--CCC-C--C-T-CTGT-G---CTGCTGCCGCAACC
* * * * *
4633759 CTCAATCCT-ATCTGATCTTAGACT-GGAATGAACTCCATATGCCTAAGCCAACCGACGGAACTA
248 CTCAGT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * *
4633822 GCGGTCGGGCGGG-TGAGCGGGCACTAC-ACGGCCAGAGAGACGGGTTACGCAAGCCGTGGATCG
312 GCGGGCGGGCGGGCGGA-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * * * **
4633885 ATAGGGTTGTAGGTGGGTTTCGGCACATCTTCATATTTTTGCAAGCCAATGAGATTTTTATGGCT
376 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
4633950 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA-AGCGACTCGTTTT
441 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA-CGACTCG---T
* * ** *
4634014 CTATTTTTCATAATTTTTGAAACTTTTTACTGTTCAT-GATTTTTTAAAATTTTTTTGGAAGAAG
502 -TATTTTTCATGATTTTTGAAACTTTTTACGGTTC-TGGATTTTTTAAAATTTTTTCAGAAGGAG
* * * * *
4634078 CTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGTATGCACAAAAAAATTCGGC
565 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* *
4634143 TAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTT
630 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
4634208 AATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTCGAGG
695 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
4634273 TTTGATGAGGGATAGGGTGCCAATATAAGGGCCAAGTACCAGCACCCATCGGACATCATGTGCGC
760 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * ** **
4634338 ACACCCGCCGGCCCCTCCGATTGCCGGAACCGTAATGCTACCGGTCAGGTTCTCCGGCGATGC
825 ACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC
* * * * * *
4634401 TCCAGCGGTGGTGCCCCGACGAAGAAAAGTGAGGCACCAGCACATGCCCGAGCCTAACATGTGCT
1 TCC-GCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * *
4634466 GCCGTAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGTGAAT
65 GCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * ** * *
4634531 GAACTCCATATGCCTAAGTCAACCCACCAAACGACCCTGCGGGCGCTCAGCTAGCCAAAAGGGCG
130 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* *
4634596 GGATCCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGTG-TGCTGCCGCAACCCTCGGTCTGGTC
195 GGATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGTGCTGCTGCCGCAACCCTCAGTCTGGTC
* * * *
4634660 TGATCTTAGATTGGGAATGAACTCCGTATACCTAAGCCAACCAACGAAACGAGCGGACGGGCGGG
260 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * *
4634725 CGGACGGGCTCTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
325 CGGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
4634790 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTGAATTCGTACA
390 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
4634855 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCG-T-TTTTTCATGATTTTTG
455 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTATTTTTCATGATTTTTG
* *
4634918 AAACTTTTTGA-GGTTCTGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTAGT
520 AAACTTTTT-ACGGTTCTGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
* * * * *
4634982 AGACGCGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAAATCAAAGTTTACA
584 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
4635047 AGATTTTGTGATCATTTGAAAAAAGTGTCCGCATTTCAGACACTTTAATAGCTACTGGCAGCAAA
649 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * *
4635112 CCTGTAAAATCTCGATTGCTCTTTATGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
714 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * *
4635177 CCAATATAAGGGCCAAGTACCAGCTCCCATCGGACATCATGTGCGTACACCCCTCGGCCCCCCCG
779 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
* * * * * * * * *
4635242 ATCATCAGAACTCCAATGCTGCCAGTAAGGTTCTCCAGTGATCC
844 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC
* * * ** * * *
4635286 TCTAGCGATGCTGCCCCGAGGAAGAAAAATATGGCACCAGCACATGGCTGAGCCCAGGATGTGCT
1 TC-CGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * *
4635351 GCTGTAA-CC-C--T-C-G---G-TC-----C-------G-A-TCCG-AT-CTTAGATTGGGAAT
65 GCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * *
4635390 GAACTTCGTATGCCTAAGTTAACCCACGAAACGAGCGTGAGGGCACTCAGCCGGCTAGAGGGGCG
130 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * * *
4635455 AGATGCGCAAGCCGGGGATCAGCCGGGTCCCCATCTGCGTGTTGCTGATCCTGCTATCGTAGCCC
195 GGATGCGCAAGCCAGGGATCGGCCGGGTCCCC--CT-C-TG-TGCTG---CTGC---CGCAACCC
* * * *
4635520 TCAGTCTGGTCTGATCTTAGAATAGGAATGAACTCTGTATACCTAAGCCAACCGAC-AAA--A--
249 TCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* * * * *
4635580 ---C--GAGAG-GG-CGGGCACTACGCCAGCCAGAGAGACGGGATGCACAAGCCCTGGATCGATA
314 GGGCGGGCGGGCGGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* *
4635638 GTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC-TCACCAATGCCATTTTTATGGCTTG
379 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT-GCCAATGCCATTTTTATGGCTTG
* *
4635702 TAAATTAATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTA
443 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG----TTA
** * * *
4635767 TTTTTCACCATTTTTGAAACTTTCTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
504 TTTTTCATGATTTTTGAAACTTTTTACGGTTCTGGATTTTTTAAAATTTTTTCAGAAGGAGTTTT
*
4635832 GGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAA
569 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
4635896 AACTCGAAGTGTACAAGATTTTGTGA-CATTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
634 AACTCGAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
4635960 GGCTGCTGGCAGCAAACCTGTAAAATCT
698 GGCTACTGGCAGCAAACCTGTAAAATCT
4635988 TGAATGCACT
Statistics
Matches: 1383, Mismatches: 173, Indels: 99
0.84 0.10 0.06
Matches are distributed among these distances:
858 1 0.00
859 249 0.18
860 4 0.00
861 8 0.01
862 2 0.00
863 6 0.00
864 114 0.08
865 92 0.07
868 5 0.00
870 4 0.00
871 57 0.04
875 2 0.00
876 1 0.00
879 1 0.00
880 1 0.00
881 1 0.00
883 1 0.00
884 3 0.00
885 391 0.28
886 2 0.00
888 2 0.00
889 30 0.02
890 55 0.04
891 147 0.11
892 1 0.00
893 1 0.00
894 4 0.00
895 1 0.00
896 1 0.00
898 1 0.00
899 3 0.00
901 191 0.14
902 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
TCCGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
CCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
GATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGTGCTGCTGCCGCAACCCTCAGTCTGGTCT
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
GGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTATTTTTCATGATTTTTGA
AACTTTTTACGGTTCTGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC
Found at i:4636971 original size:26 final size:26
Alignment explanation
Indices: 4636932--4636984 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4636922 CCGGTCCGAT
4636932 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
4636958 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
4636984 C
1 C
4636985 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:4637173 original size:148 final size:148
Alignment explanation
Indices: 4636958--4637228 Score: 409
Period size: 148 Copynumber: 1.8 Consensus size: 148
4636948 ACTCCATATG
* * *
4636958 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* *
4637023 CGGCCAGAGGGGCAGGATGCGCAAGTC-GAGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATC
66 CGGCCAGAGGGGCAGGATACGCAAGCCAG-GGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATC
4637087 CTACTCTTTCCGGTCTGAT
130 CTACTCTTTCCGGTCTGAT
* ** *
4637106 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACTTACGAAACGAGCGTGCGGGCGCTCTAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * *
4637171 CGGCCAGAGGGGCGGGATACGCAAGCCAGGGATCGGTCGGGTCCCCCTTTGTGTGCTG
66 CGGCCAGAGGGGCAGGATACGCAAGCCAGGGATCGATCGGGTCCCCCTCTGCGTGCTG
4637229 TCCATCCTGC
Statistics
Matches: 109, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
148 108 0.99
149 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.21
Consensus pattern (148 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
CGGCCAGAGGGGCAGGATACGCAAGCCAGGGATCGATCGGGTCCCCCTCTGCGTGCTGCTGATCC
TACTCTTTCCGGTCTGAT
Found at i:4638010 original size:26 final size:26
Alignment explanation
Indices: 4637974--4638026 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4637964 TCGGTCTGAT
*
4637974 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
4638000 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
4638026 C
1 C
4638027 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4638889 original size:26 final size:26
Alignment explanation
Indices: 4638853--4638905 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4638843 TTGGTCCGAT
4638853 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
*
4638879 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
4638905 C
1 C
4638906 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:4639790 original size:26 final size:26
Alignment explanation
Indices: 4639761--4639813 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4639751 CCGGTCTGAT
4639761 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4639787 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4639813 C
1 C
4639814 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4640691 original size:26 final size:26
Alignment explanation
Indices: 4640662--4640714 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4640652 CCAATCTGAT
4640662 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4640688 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
4640714 C
1 C
4640715 CAAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4642559 original size:708 final size:704
Alignment explanation
Indices: 4640837--4642992 Score: 3275
Period size: 708 Copynumber: 3.0 Consensus size: 704
4640827 CCCAGTCCAT
* *
4640837 TCTTAGACTGGGAATGAGCTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAG
1 TCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAACGA----GCGGGCGGGCAG
* * *
4640902 GCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTAGTAGGTGGCTTTA
62 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA-GGTGGTAGGTGGGTTTA
* * **
4640967 TGCACATCTTAATATTTCTGTGTGCCAGA-GCCATTTTTATGGCTTGTAAATTCATACAATGGTC
126 GGCACATCTTCATATTTCTGCATGCCA-ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
4641031 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
190 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * *
4641096 ACTTTTTACAGTTCGAGA-TTTTTAAAATTTTTTGGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
255 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT-AGAAGGATTTTTGGCCCCAAACTTGGTAGA
* * * * *
4641160 CGTGATCCTTGTATTTTTTTTGGCATG--GAAAAAATTGAGCTAAAAACTCGAAGTGTAAAAGAT
319 CGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAATTCAGCTGAAAACTCGAAGTGTACAAGAT
* *
4641223 TTTGTGAGCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTG
384 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
4641288 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGTTAGGGGGCCAA
449 TAAAATCTCAAATGTTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * *
4641353 TATAAGGGCCAAGTACCGGCACCCATCGCAAATCATGTGCGCACACCCCCCAGCCCCCCAATCGT
514 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCGATCGT
* * * ** *
4641418 C-GAAACCCCAATGCCGTCGGTCGGGTTCTCCGACGATGCTCCGGTGATAGTGCCCCGACGAAGA
578 CAG-AACCCCAATGCCGCCGGTCAGGTTCTCCG-CTATGCTCCGACGATGGTGCCCCGACGAAGA
* * * * * *
4641482 AAAATGCGGCACCAGGACATGCCCGAACCCAGCATGTGCTGCTGTAACCCTCGGTCTGGTCCGA
641 AAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCTGA
4641546 TCTTAGACTGGGAATGAACTCCGTATC-CCTAAGCCAACCGACGAAATAAGCTG-GCGGGAGGGC
1 TCTTAGACTGGGAATGAACTCCGTA-CGCCTAAGCCAACCGACG--A-AA-C-GAGC----GGGC
* *
4641609 GGGCGGGCACTACGCCGGCCAGAGAGACGTGATGCGCAAGCCGTGGATCGATAGGATGGTAGGTG
56 GGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG-TGGTAGGTG
4641674 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
120 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
4641739 TGGTCCCTTAAGCCTTCACGTGTAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
185 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * * * *
4641804 TTAAAACTTTTTACGATTTGGGATTTTTTACAATTTTTTAGGAAGGATTTTTGGCCCCAAATTTG
250 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTA-GAAGGATTTTTGGCCCCAAACTTG
*
4641869 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAACTGAAAACTCGAAGTGTA
314 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCAT-AAAAAATTCAGCTGAAAACTCGAAGTGTA
*
4641934 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCTTTTCAGACACTTTAATGGCTACTGGCAGCA
378 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
4641999 AACCTGTAAAATCTCAAATGTTCTTTGAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
443 AACCTGTAAAATCTCAAATGTTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
4642064 GGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGTACACCCCCCGGCCCCCG
508 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCG
** *
4642129 ATCGTCAGAACCCCAATGCAACCGGTCAGGTTCTCCAGCTATGCTCCGACGATGGTGCCCCGGCG
573 ATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCC-GCTATGCTCCGACGATGGTGCCCCGACG
** * *
4642194 AAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAAGCCTCGGTCCGATC
637 AAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTC
4642259 TGA
702 TGA
* *
4642262 TCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACCAACGAAACGAGCGGGCGGGTAGGCAC
1 TCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCAC
* * *
4642327 TATGCCGGCCAGAGAGACGGGATGTGCAAGCCATGGATCGATATGGTGGTAGGTGGGTTTAGGCA
66 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA-GGTGGTAGGTGGGTTTAGGCA
* * * *
4642392 CATCTTCATATTTTTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAACGATCCCTTA
130 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
4642457 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
195 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* *
4642522 TTTCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGATGTGA
260 TTACGGTTCGAGATTTTTTAAAATTTTTT-AGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGA
*
4642587 TCCGTGTATTTTTGTTGGCATGCATAAAAAATTCAGCTGAAAACTCGAAGTGTACAAGATTTTGT
324 TCCTTGTATTTTTGTTGGCATGCATAAAAAATTCAGCTGAAAACTCGAAGTGTACAAGATTTTGT
*
4642652 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAA
389 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
4642717 TCTCAAATGTTCTTTAAGGTGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAA
454 TCTCAAATGTTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
4642782 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCGGCCCCCCGATCG-CTAG
519 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGG-CCCCCGATCGTC-AG
* * *
4642846 AACCCTAATGCCGCCGATCAGGTTCTCCGGCTATGCTCCGACGATGGTGCCCCGACGAAGAAACA
581 AACCCCAATGCCGCCGGTCAGGTTCTCC-GCTATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
*
4642911 TGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTACGGTCTGA
645 TGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCTGA
4642971 TCTTAGACTGGGAATGAACTCC
1 TCTTAGACTGGGAATGAACTCC
4642993 ATATGCTTAG
Statistics
Matches: 1318, Mismatches: 103, Indels: 52
0.89 0.07 0.04
Matches are distributed among these distances:
707 203 0.15
708 280 0.21
709 192 0.15
711 2 0.00
712 8 0.01
713 203 0.15
714 69 0.05
715 1 0.00
716 156 0.12
717 204 0.15
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (704 bp):
TCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCAC
TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
TACGGTTCGAGATTTTTTAAAATTTTTTAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATC
CTTGTATTTTTGTTGGCATGCATAAAAAATTCAGCTGAAAACTCGAAGTGTACAAGATTTTGTGA
CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
TCAAATGTTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCGATCGTCAGAACCC
CAATGCCGCCGGTCAGGTTCTCCGCTATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGC
ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCTGA
Found at i:4643011 original size:26 final size:26
Alignment explanation
Indices: 4642972--4643024 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4642962 ACGGTCTGAT
4642972 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4642998 CTTAGACTGTGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
4643024 C
1 C
4643025 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4644772 original size:26 final size:26
Alignment explanation
Indices: 4644720--4644772 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
4644710 CTGGTCCGAT
*
4644720 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGCATG
4644746 CTTAGACTGGGAATGAAC-TCTGCATG
1 CTTAGACTGGGAATGAACTTC-GCATG
4644772 C
1 C
4644773 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGCATG
Found at i:4645645 original size:26 final size:26
Alignment explanation
Indices: 4645606--4645658 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4645596 CTAGTTCGAT
* * *
4645606 CTTAGATTGGGAATGATCTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
4645632 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
4645658 C
1 C
4645659 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:4646518 original size:26 final size:26
Alignment explanation
Indices: 4646489--4646541 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4646479 CCGGTCCGGT
4646489 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
4646515 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4646541 C
1 C
4646542 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4647399 original size:26 final size:26
Alignment explanation
Indices: 4647361--4647413 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4647351 CCGATCCGAT
4647361 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
4647387 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
4647413 C
1 C
4647414 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:4647546 original size:26 final size:26
Alignment explanation
Indices: 4647510--4647568 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 26
4647500 CTGCGTGCTG
*
4647510 CCGATCCTGCTGTCGCGACCCTCGGT
1 CCGATCCTGCTGTCGCGACCCTCGAT
*
4647536 CCGATCCTGCTGTCGTGACCCTCGAT
1 CCGATCCTGCTGTCGCGACCCTCGAT
4647562 CCGATCC
1 CCGATCC
4647569 AATCTTAGAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.10, C:0.42, G:0.24, T:0.24
Consensus pattern (26 bp):
CCGATCCTGCTGTCGCGACCCTCGAT
Found at i:4648288 original size:26 final size:26
Alignment explanation
Indices: 4648259--4648311 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4648249 CCGATCCGAT
4648259 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4648285 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4648311 C
1 C
4648312 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4649071 original size:872 final size:873
Alignment explanation
Indices: 4642246--4649942 Score: 9641
Period size: 872 Copynumber: 8.7 Consensus size: 873
4642236 CTGCCACAAG
* * *
4642246 CCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACCAACGAAACGA
1 CCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * *
4642311 GCGGGCGGG--TA------GGCACTATGCCGGCCAGAGAGACGGGATGTGCAAGCCATGGATCGA
66 GCGGGCGGGCAGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * *
4642368 TATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATACCATTTTTATGGCTT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
* **
4642433 GTAAATTCATACAACGATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
196 GTAAATTCATACAATGGGCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
** * * ** *
4642498 ATTTTTCACGATTTTTGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGATTTT
261 ATTTTTCACGATTTTCCAAACTTTTTACGGTTCG-GGTTTTTTAAAATTTTTTTGGAAGGAGTTT
* * * * * *
4642563 TGGCCCCAAACTTGGTAGATGTGATCCGTGTATTTTTGTTGGCATGCA-TAAAAAATTCAGCTGA
325 TGGCCCCAAACTTGGTAGACGTGATCCTTGTCTTTTTGTTGGCATCCACAAAAAAATTCAGCTAA
4642627 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
390 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * * *
4642692 GGCTACTGGCAGCAAACCTATAAAATCTCAAATGTTCTTTAAGGTGGTGTGAGTTCTAGAGGTTT
455 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
4642757 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
520 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * ** *
4642822 CACCCCCGGCCCCCCGATCGCTAGAACC-CTAATGCCGCCGATCAGGTTCTCCGGCTATGCTCCG
585 CCCCCCCGGCCCCCCGATCACCGGAACCAC-AATGCCGCCGGTCAGGTTCT-C--C---G----G
* *
4642886 ACGATGGTGCCCCGACGAAGAAACATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
639 -CGATGGTGCCCCGACGAAGAAAAATGCAGCACCAACACATGCCC-AG--CA--A--T-CT----
* * * * * *
4642951 TAACCCTCGGTACGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGTGAATGAAC
691 T-----TC-GTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * ** * * * * *
4643016 TCCATATGCCTAAGTCAACCGAAGAAATGAGCGTATGGGTGGTCAACCGCCCAGAGCGGTGGGAT
750 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * * * * * *
4643081 GCACAAGTCGAGGATAGGCCGGGTCCCACTCTACGTGCTGCCGATCCTGCTATTGCAAC
815 GCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGTCGCAAC
* * * ** * * * *
4643140 CCTTGGTCCGGTCCAATCTCAGACTGCGAATGAACTCCGTATGCTTAAGCCAACTGACGAAACGA
1 CCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * *
4643205 ----GC-GG--G-CGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCTTGGATCCA
66 GCGGGCGGGCAGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * *
4643262 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTCCATGCCAATGCCATTTTTATGGCTT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
* * *
4643327 TTAAATTCTTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
196 GTAAATTCATACAATGGGCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* ** * *
4643392 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATATTTTTGGAAGGAGTTT
261 ATTTTTCACGATTTTCCAAACTTTTTACGGTTCG-GGTTTTTTAAAATTTTTTTGGAAGGAGTTT
** * * *
4643457 TCACCCCAAACTTGGTAGACGTGATCCTTG-CATTTTTGTTGGCATGCA-AACAAAAAATCAACT
325 TGGCCCCAAACTTGGTAGACGTGATCCTTGTC-TTTTTGTTGGCATCCACAA-AAAAATTCAGCT
* * * * *
4643520 AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATATCCCCATTTTAGACACTTAA
388 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
4643585 ATGGCTACTGGCAACAAACCTGTAAAATCGT-AAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
453 ATGGCTACTGGCAGCAAACCTGTAAAATC-TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * *
4643649 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATTGCACATCATGTG-TC
517 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
** * * *
4643713 ACACCCCTTCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGT
582 ACACCCCCCCGG-CCCCCCGATCACCGGAACCACAATGCCGCCGGTCAGGTTCTCCGGCGATGGT
** * * * * * * * * * * *
4643778 GCCCCGGTGAAGAAAAATACGGCACCAGCACATGACCGAGCCCAGC-AT-GTGCTA-CTG--C-A
646 GCCCCGACGAAGAAAAATGCAGCACCAACACATG-CCCAG-CAATCTTTCGTCCGATCCGATCTT
** * **** * *
4643837 ACCCTCGG--TCCGGTCTG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAATCCACG
709 AGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * ** * *
4643898 AAACAAGTGTATGGGTGCTCAGCCGGCCA-ATGGGGCGGGATGCGCAAGCCGAGGATCGATCGGG
774 AAACGAGCGTGCGGGTGCTCAGCCGGCCAGA-GGGGCGGGATGCGCAAGCCGGGGATCGACCGGG
* * *
4643962 TCCCCCTCTGCGTGCTGCTGATCCTGCTGCCGCTAC
838 TCCCCCTCTGCGTGCTGCCGATCCTGCTGTCGCAAC
* * * * * **
4643998 CCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTATGCGAACTAACGAAACGA
1 CCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* *
4644063 GCTGGCGGGC--A--GGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
66 GCGGGCGGGCAGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* *
4644124 TAGGGTGGTAGGT-GGTTTAGGCACATCTTCAGATTTCTGCATGCCAATGCCATTTTTATGGCTT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
* *
4644188 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
196 GTAAATTCATACAATGGGCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
** * * * *
4644253 ATTTTTCACGATTTTTAAAACTTTTTTGCGATTTGGGATTTTTTAAAATTTTTTTGGAAAGAG-T
261 ATTTTTCACGATTTTCCAAAC-TTTTTACGGTTCGGG-TTTTTTAAAATTTTTTTGGAAGGAGTT
* * * * *
4644317 TTGAGCCCTAAACTTGGTAGACGTGATCCTTGTGTTTTTTTTGGCATGCACAAAAAAATTCAGCC
324 TTG-GCCCCAAACTTGGTAGACGTGATCCTTGTCTTTTTGTTGGCATCCACAAAAAAATTCAGCT
4644382 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
388 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
*
4644447 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGT
453 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
4644512 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTTCGCA
518 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
** *
4644577 CACCCCTCCCGGCCCCCCCGATCACCGGAACC-CTAATGCCATCGGTCAGGTTCTCCGACGATGG
583 CACCCC-CCCGG-CCCCCCGATCACCGGAACCAC-AATGCCGCCGGTCAGGTTCTCCGGCGATGG
** * *
4644641 TGCCCCGACGAAGAAAAATGGGGCACCAGCACATCCTCGAGCCCAGCATGTGCTGTCGAAACCCT
645 TGCCCCGACGAAGAAAAATGCAGCACCA--ACA-CAT---GCCCAGCA-AT-CT-T--------T
* * * * * *
4644706 CGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGCAT
693 C-GTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * *
4644771 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCGGGATACGCAAG
757 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* ** * * *
4644836 CCGGGGATCGACCGGGTCCTCCTCTATGTGCTGCCGATCCTCCTGTTGCAAG
822 CCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGTCGCAAC
* * * * * * * *
4644888 CCTTGATCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTGAGCCAACTGACGAAATGA
1 CCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * * * *
4644953 GCGGACGGGCGGACGGGTGGGCACTACGTCGACCAGAGAGACGGGATGTGCAAGCTGTGGATTGA
66 GCGGGCGGGCAGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
*
4645018 TAGGGTGGTAGGTGGGTTTAGGC-CATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGGCT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT-GGCT
*
4645082 TGTAAATTCATACAAT-GGTCCTTAAGCCTTCACGTGAAGTTTCATGGC-AGACGACTCG-TTTC
195 TGTAAATTCATACAATGGGCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* *
4645144 TATTTTTCATGATTTT-CAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTCGGAAGGAGTT
260 TATTTTTCACGATTTTCCAAACTTTTTACGGTTCGGG-TTTTTTAAAATTTTTTTGGAAGGAGTT
* * * * *
4645207 TTGG-CCCAAACTTTGGTAGATGTGATCCTTGTATTTTTGTT-GAATGCACAAAACAATTCAGCT
324 TTGGCCCCAAAC-TTGGTAGACGTGATCCTTGTCTTTTTGTTGGCATCCACAAAAAAATTCAGCT
* *
4645270 AAAAACTTGAAGTGTACAAGATTTTGTGACCATTAGAAAAAAGTGTCCCCATTTCAGACACTTTA
388 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * *
4645335 ATGGCTACTGGCAGTAAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGT
453 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * *
4645400 TTGATGAGGGATAGGGGCCCAATATAAGTGCCAAGTACAAGCACCCATCGCACATCATGTGCGCA
518 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * ** * * *
4645465 CA-CCACCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCAATTAGGTTCTACAGCGATGGTGC
583 CACCCCCCCGGCCCCCCGATCACCGGAACCACAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGC
* ** * *
4645529 CCCGACGAACAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCG
648 CCCGACGAA-GAAAAATGCAGCACCAACACATGCCC-AG--CA--A--T-CT---------TTC-
* * * * * *
4645594 GT-CTAGTTCGATCTTAGATTGGGAATGATCTCCGTATGCTTAGACTGAGAATGAACTCCGTATG
694 GTCCGA-TCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
4645658 CCTAAGTTAACCCACGCAACGAGCGTGCGTGTGCTTAGCCAGCCAGAGGGGCGGGATGCACAAGT
758 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * *
4645723 CGGGGAAT-GACCAGGTCCCCTTTTGTGTGTTGCCGATCCTGCTATCGCAAC
823 CGGGG-ATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGTCGCAAC
* * * *
4645774 CCTCGATCC-AGTCTGATCTTAGATTGAGAATGAACTCTGTATCCCTAAGCCAACCGACGAAACG
1 CCTCGATCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * *
4645838 AGCGGGCTGGTAGGCGGGCGGGTAGGCGGGTGGGCACTAC-TCCGGCTAGAGAGACGGGATGCGC
65 A----GC--G--GGCGGGC----AGACGGGCGGGCACTACGT-CGGCCAGAGAGACGGGATGCGC
* * * * *
4645902 AAGCTGTGGATCGATAGGCTGGTAGGTGGGTTTAGGCACATTTTCATATTCCTGCATGCCAATGC
117 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
* *
4645967 CATTTTTATGGCTTGTAAATTGATACAAT-GGTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
182 CATTTTTATGGCTTGTAAATTCATACAATGGGCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
*
4646031 ACGACTCGTTTTCTATTTTTCATGATTTTCCAAACTTTTTACGGTTCGGGTTTTTTGAAAAATTT
247 ACGACTCGTTTTCTATTTTTCACGATTTTCCAAACTTTTTACGGTTCGGGTTTTTT--AAAATTT
* *
4646096 TTTTGAAAGGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTCTTTTTGTTGGCATCCACA
310 TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTCTTTTTGTTGGCATCCACA
* *
4646161 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGACCATTTGAATAAAGTGTCCCCAT
375 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
4646226 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
440 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
4646291 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACGAGCACCCATCGCA
505 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
4646356 CATCATGTGCGCACA--CCCCCGGACCCCCCGATCACCGGAACCACAATGCCGCCGGTCAGGTTC
570 CATCATGTGCGCACACCCCCCCGG-CCCCCCGATCACCGGAACCACAATGCCGCCGGTCAGGTTC
* * * * *
4646419 TCCGGTGATGGTGCCACGACGAAGAAAAATGCAGCACCAACACATG-CC-GTAACCTTCCGTCCG
634 TCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAACACATGCCCAGCAATCTTTCGTCCG
* *
4646482 GTCCGGTCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
699 ATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* *
4646547 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
764 TCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * *
4646612 TCGACCGGGTCCCCCTCTGCGTGCTGGCAATCCTGCTGTCGCGAC
829 TCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGTCGCAAC
* ** * *
4646657 CCTCGGTCCGATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGA
1 CCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * *
4646722 GCGGGCGGGCAGACGGGCAGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCTGTGGATCGA
66 GCGGGCGGGCAGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * * *
4646787 TAGGGTGGTAGGCGTGTTTAGGCACATCTTCTTATTTCTGTGTGCCAATGCCATTTTTATGGCAT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
* * *
4646852 GTAAATTCATACAATGGGCCCTTAAGCCTTCACGTGATGTTTCACGACAAGACGACTCGTTTTCT
196 GTAAATTCATACAATGGGCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * *
4646917 ATGTTTCACGATTTTCCAAATTTTTTGCGGTTCGGGTTTTTTGAAAATTTTTTTGGAAGGGGTTT
261 ATTTTTCACGATTTTCCAAACTTTTTACGGTTCGGGTTTTTT-AAAATTTTTTTGGAAGGAGTTT
*
4646982 TGGCCCCTAACTTGGTAGACGTGATCCTTGTCTTTTTGTTGGCATCCACAAAAAAATTCAGCTAA
325 TGGCCCCAAACTTGGTAGACGTGATCCTTGTCTTTTTGTTGGCATCCACAAAAAAATTCAGCTAA
* ** *
4647047 AAACTCGAAGTGTACAAGATTTTGAGACCATTTGACTAAAGTGTCCCCATTTAAGACACTTTAAT
390 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
4647112 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTATCGAGGTTT
455 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* *
4647177 GATGAGGGATAGGGGGCCATTATAAGGGCCAAGTACGAGCACCCATCGCACATCATGTGCGCACA
520 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * *
4647242 CCCCCCCGACCCCCCGATCACTGAAACTACAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGCCC
585 CCCCCCCGGCCCCCCGATCACCGGAACCACAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGCCC
* *
4647307 CGACGAAGAAAAATGCAGCACCAACACATG-CC-GCAACCTTTCATCCGATCCGATCTTAGACTA
650 CGACGAAGAAAAATGCAGCACCAACACATGCCCAGCAATCTTTCGTCCGATCCGATCTTAGACTA
*
4647370 GGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
715 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* *
4647435 GCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGCATCGACCGGGTCCCCCT
780 GCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCT
*
4647500 CTGCGTGCTGCCGATCCTGCTGTCGCGACC
845 CTGCGTGCTGCCGATCCTGCTGTCGC-AAC
4647530 CTCGGTCCGATCCTGCTGTCGTGACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCGT
1 C-C--T-CGA---T-C---C--GA---TC--T--G-----ATCTTAGACTGGGAATGAACTCCGT
* * * * *
4647595 ACGCCTAAGCCATCCGATGAAACGAGCGGGCGGGCAGACGGGCGGGCACTACGCCGACCAGAGAG
41 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGACGGGCGGGCACTACGTCGGCCAGAGAG
* * * *
4647660 ATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTCAAATTTTTG
106 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
* *
4647725 CGTGCCAATGCCATTTTTATGGCATGTAAATTCATACAATGGGCCCTTAAGCCTTCACGTGATGT
171 CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGGCCCTTAAGCCTTCACGTGAAGT
* * * * *
4647790 TTCACGACAAGATGACTCGTTTTCTATGTTTCACGATTTTCCAAACTTTTTACGGTTCAGGTTTT
236 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCCAAACTTTTTACGGTTCGGGTTTT
* *
4647855 TTGAAAATTTTTTTGGAAGGGGTTTTGGCCCCTAACTTGGTAGACGTGATCCTTGTCTTTTTGTT
301 TT-AAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTCTTTTTGTT
* **
4647920 GGCATCCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGACCATTTGACTAAA
365 GGCATCCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
4647985 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
430 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* *
4648050 AAGGGGGTGTGAGTTATCGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCCA-
495 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CCAG
* *
4648114 CACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCGATCATCGGAACCACAATGCCGCC
559 CACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCACCGGAACCACAATGCCGCC
4648179 GGTCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAACACATG-CC-GCAAT
624 GGTCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAACACATGCCCAGCAAT
*
4648242 CTTTCGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCG
689 CTTTCGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * *
4648307 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGCGCGAGATGCAC
754 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * **
4648372 AAGCCGGGGATTGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGTCGTGAC
819 AAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGTCGCAAC
** * * *
4648427 CCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCTGTACGCCTAAGCCAACCGATGAAACGA
1 CCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * *
4648492 GCGGGCGGGCAGACGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATTGA
66 GCGGGCGGGCAGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * *
4648557 TAGGGTGGTAGGTGTGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCAT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
* * *
4648622 GTAAATTCATACAATGGGCCCTTAAGCCTTCACGTGATGTTTCACGACAAGACGACTCGTTTTCT
196 GTAAATTCATACAATGGGCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
*
4648687 ATTTTTCACGATTTTCCAAACTTTTTACGGTTCGGGTTTTTTGAAAATTTTTTTGGAAGGGGTTT
261 ATTTTTCACGATTTTCCAAACTTTTTACGGTTCGGGTTTTTT-AAAATTTTTTTGGAAGGAGTTT
* *
4648752 TGGCCCGAAACTTGGTAGACGTGATCCTTGTCTTTTTGTTGGTATCCACAAAAAAATTCAGCTAA
325 TGGCCCCAAACTTGGTAGACGTGATCCTTGTCTTTTTGTTGGCATCCACAAAAAAATTCAGCTAA
* *
4648817 AAACTCGAAGTGTACAAGATTTTGAGACCATTTGAATAAAGTGTCCCCATTTCAGACACTTTAAT
390 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
4648882 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTT
455 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* *
4648947 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACGAGCACCCATCGCACATGATGTGCGCACA
520 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * *
4649012 CCCCCCCGGCCCCCTGATCACCGGAACCATAATGCCGCTGGTCAGGTTCTCCGGCGATGGTGCCC
585 CCCCCCCGGCCCCCCGATCACCGGAACCACAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGCCC
* *
4649077 CGACGAAGAAAAATGCAGCACCAACACATG-CC-GCAACCTTCCGTCCGATCCGATCTTAGACTA
650 CGACGAAGAAAAATGCAGCACCAACACATGCCCAGCAATCTTTCGTCCGATCCGATCTTAGACTA
* *
4649140 GGAATGGACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGA
715 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* ** ** * ** * *
4649205 GCGTACGGGCACTCAGATGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCACCCA
780 GCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCT
** * *
4649270 CTGCGTGCTATCGATCCTGCTGCCACAAC
845 CTGCGTGCTGCCGATCCTGCTGTCGCAAC
* * * *
4649299 CTTCGATCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAA
1 CCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * ** * *
4649364 GCGAGCGGGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGGTGGGATGCGCAAGCTGTGGATTGA
66 GCGGGCGGGCAGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * *
4649429 TAGGGTGGTAGGTGGGTTTAGGTATATCTTCATATTTCTG-GATGCCAATGCGATTTTTATGCCT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG-TGCCAATGCCATTTTTATGGCT
* * * * * *
4649493 TGTAAAATCATACAGTGGTCCCTTAAGCCTTCATGTGAAGTTTCATGTG-AACACGACTTGTTTT
195 TGTAAATTCATACAATGGGCCCTTAAGCCTTCACGTGAAGTTTCATG-GCAAGACGACTCGTTTT
* * * * * *
4649557 TTATTTTTCACAATTTTCAAAAGTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
259 CTATTTTTCACGATTTTCCAAACTTTTTACGGTTCGGG-TTTTTTAAAATTTTTTTGGAAGGAGT
* * * *
4649622 TTTGGCCCTAAACTTGGTAGACGTGATCCTT-T-TTTTTTTTTGCA-CGCACAAAAATATTCAGC
323 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTCTTTTTGTTGGCATC-CACAAAAAAATTCAGC
*
4649684 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGAGTCCCCATTTCAGACACTTT
387 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* **
4649749 AATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGG
452 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
4649814 TTTGATGTGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
517 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* ** * *
4649879 ACATCCCCCCGAGCCCTCCCGATTGCCGGTAACC-CAATGCCACCGGTCAGGTTCTCCGACGATG
582 ACACCCCCCCG-GCCC-CCCGATCACCGG-AACCACAATGCCGCCGGTCAGGTTCTCCGGCGATG
4649943 CTTCGGCGAT
Statistics
Matches: 6052, Mismatches: 601, Indels: 322
0.87 0.09 0.05
Matches are distributed among these distances:
857 1 0.00
858 172 0.03
859 2 0.00
860 3 0.00
861 134 0.02
862 325 0.05
863 14 0.00
864 74 0.01
865 3 0.00
866 5 0.00
867 2 0.00
868 2 0.00
869 5 0.00
870 222 0.04
871 401 0.07
872 1481 0.24
873 18 0.00
874 1 0.00
875 7 0.00
876 1 0.00
877 3 0.00
878 1 0.00
879 2 0.00
880 6 0.00
881 6 0.00
882 4 0.00
883 213 0.04
884 46 0.01
885 56 0.01
886 237 0.04
887 4 0.00
888 214 0.04
889 47 0.01
890 215 0.04
891 5 0.00
892 22 0.00
893 15 0.00
894 458 0.08
895 250 0.04
896 4 0.00
897 3 0.00
898 937 0.15
899 44 0.01
900 27 0.00
901 20 0.00
902 6 0.00
903 69 0.01
904 265 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (873 bp):
CCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
GCGGGCGGGCAGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGGCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCACGATTTTCCAAACTTTTTACGGTTCGGGTTTTTTAAAATTTTTTTGGAAGGAGTTTT
GGCCCCAAACTTGGTAGACGTGATCCTTGTCTTTTTGTTGGCATCCACAAAAAAATTCAGCTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
CCCCCCGGCCCCCCGATCACCGGAACCACAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGCCCC
GACGAAGAAAAATGCAGCACCAACACATGCCCAGCAATCTTTCGTCCGATCCGATCTTAGACTAG
GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
CGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTC
TGCGTGCTGCCGATCCTGCTGTCGCAAC
Found at i:4649160 original size:26 final size:26
Alignment explanation
Indices: 4649131--4649183 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4649121 CCGATCCGAT
*
4649131 CTTAGACTAGGAATGGACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
4649157 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4649183 C
1 C
4649184 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4650073 original size:26 final size:26
Alignment explanation
Indices: 4650037--4650086 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
4650027 GTCTGATCTC
4650037 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
4650063 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
4650087 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:4650803 original size:746 final size:744
Alignment explanation
Indices: 4649316--4650837 Score: 2237
Period size: 746 Copynumber: 2.0 Consensus size: 744
4649306 CCGGTCTGAT
* * *
4649316 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGAGCGGGCAGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACAAGCGAGCGGGCAGGCAGG
* * * * *
4649381 CGGGCACTACGTCGGCCAGAGAGGTGGGATGCGCAAGCTGTGGATTGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGACAGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
4649446 TTAGGTATATCTTCATATTTCTGGATGCCAATGCGATTTTTATGCCTTGTAAAATCATACAGTGG
131 TTAGGCACATCTTCATATTTCTGGATACCAATGCCATTTTTATGCCTTGTAAAATCATACAGTGG
* * * * *
4649511 TCCCTTAAGCCTTCATGTGAAGTTTCATGTGAACACGACTTGTTTTTTATTTTTCACAATTTTCA
196 TCCCTAAAGCCTTCACGTGAAGTTTCAAGTGAACACGACTCGTTTTTTATTTTTCACAATATTCA
* * * *
4649576 AAAGTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGTA
261 AAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
4649641 GACGTGATCCTTTTTTTTTTTTGCACGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGA
326 GACGTGATCCTTTTTTTTGTTGGCACGCACAAAAATATTCAACTAAAAACTCGAAGTGTACAAGA
* *
4649706 TTTTGTGACCATTTGAAAAAAGAGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCT
391 TTTTGTGACCATTTGAAAAAAGAGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCT
* *
4649771 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGTGGCATAGGGGGCCA
456 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGCATAGGGGGCCA
* * *
4649836 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACATCCCCCCGAGCCCTCCCGA
521 ATATAAGGGCCAAGTACCAGCACCCACCACACATCATGTGCGCACATCCCCCCGAGCCCCCCCGA
* * * * * *
4649901 TTGCCGGTAACCCAATGCCACCGGTCAGGTTCTCCGACGATGCTTCGGCGATGGTGCCCCGACGA
586 TCGCCGGTAACCCAATGCCACCAGTCAGGTTCTCCAACGAAGCTCCGACGATGGTGCCCCGACGA
* * * * * * *
4649966 AGAAAATTACGACACCAGCACATGCCCAAGCCTAGCATGTGCTGCCGCAACCCTCGGTCTGGTCT
651 AGAAAAATACGACACCAACACATGCCCAAGCCTAGAATGTGCTGCCACAACCCTCGGTCCGATCC
*
4650031 GATCTCAGACTGGGAATGAACTCCGTATG
716 GATCTCACACTGGGAATGAACTCCGTATG
** * *
4650060 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAATGAGCGGGCGGGCGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACAAGCGAGCGGGCAGGCAGG
4650125 CGGGCACTACGACAGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGACAGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
4650190 TTAGGCACATCTTCATATTTCTGTG-TACCAATGCCATTTTTATGGCTTGTAAATTCATACAGTG
131 TTAGGCACATCTTCATATTTCTG-GATACCAATGCCATTTTTATGCCTTGTAAAATCATACAGTG
* *
4650254 GTCCCTAAAGCCTTCACGTGAAGTTTCAAG-GCAAGACGACTCGTTTTTTATTTTTCACGATATT
195 GTCCCTAAAGCCTTCACGTGAAGTTTCAAGTG-AACACGACTCGTTTTTTATTTTTCACAATATT
*
4650318 CAAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGG
259 CAAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * *
4650383 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAGCA-ATTCAACTAAAAACTCGAAGTGTG
324 TAGACGTGATCCTT-T-TTTTTGTTGGCACGCACAAA-AATATTCAACTAAAAACTCGAAGTGTA
* * * *
4650447 CAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTTAAACACTTTAATGGCTACTGGCAGCT
386 CAAGATTTTGTGACCATTTGAAAAAAGAGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCA
* *
4650512 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
451 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGCATAGGG
*
4650577 GGCCAATATAAGGGCCAAGTACCAGCACCCACCACACATCATGTGCGTACAGGT-CCCCCG-GCC
516 GGCCAATATAAGGGCCAAGTACCAGCACCCACCACACATCATGTGCGCACA--TCCCCCCGAGCC
* ** *
4650640 CCCCCGCTCGTTGG-AACCCCAATGCCGCCAGTCAGGTTCTCCAACGAAGCTCCGACGATGGTGC
579 CCCCCGATCGCCGGTAA-CCCAATGCCACCAGTCAGGTTCTCCAACGAAGCTCCGACGATGGTGC
* * * * * * *
4650704 CCCGACGAAGAAAAATGCGGCACCAATACATGCTCGAGCCTAGAATGTGCTGCCACAATCCTTGG
643 CCCGACGAAGAAAAATACGACACCAACACATGCCCAAGCCTAGAATGTGCTGCCACAACCCTCGG
*
4650769 TCCGATCCGATCTTACACTGGGAATGAACTCCGTATG
708 TCCGATCCGATCTCACACTGGGAATGAACTCCGTATG
*
4650806 CTTAGACTGCGAATGAACTCCGTATGCCTAAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAG
4650838 TTAACCCACG
Statistics
Matches: 693, Mismatches: 77, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
743 1 0.00
744 303 0.44
745 4 0.01
746 377 0.54
747 7 0.01
748 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (744 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACAAGCGAGCGGGCAGGCAGG
CGGGCACTACGACAGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTGGATACCAATGCCATTTTTATGCCTTGTAAAATCATACAGTGG
TCCCTAAAGCCTTCACGTGAAGTTTCAAGTGAACACGACTCGTTTTTTATTTTTCACAATATTCA
AAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
GACGTGATCCTTTTTTTTGTTGGCACGCACAAAAATATTCAACTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGAGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGCATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCACCACACATCATGTGCGCACATCCCCCCGAGCCCCCCCGA
TCGCCGGTAACCCAATGCCACCAGTCAGGTTCTCCAACGAAGCTCCGACGATGGTGCCCCGACGA
AGAAAAATACGACACCAACACATGCCCAAGCCTAGAATGTGCTGCCACAACCCTCGGTCCGATCC
GATCTCACACTGGGAATGAACTCCGTATG
Found at i:4650809 original size:26 final size:26
Alignment explanation
Indices: 4650780--4650832 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4650770 CCGATCCGAT
*
4650780 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGCGAATGAACTCCGTATG
*
4650806 CTTAGACTGCGAATGAACTCCGTATG
1 CTTACACTGCGAATGAACTCCGTATG
4650832 C
1 C
4650833 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGCGAATGAACTCCGTATG
Found at i:4651714 original size:26 final size:26
Alignment explanation
Indices: 4651678--4651730 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4651668 CCGATCCGAT
* *
4651678 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
4651704 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
4651730 C
1 C
4651731 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:4652238 original size:893 final size:889
Alignment explanation
Indices: 4650060--4652790 Score: 3792
Period size: 910 Copynumber: 3.0 Consensus size: 889
4650050 ACTCCGTATG
*
4650060 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAAATGAGCGGGCGGGCGGGCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAA-GAGCGGGCGGGCGGGCGG
* *
4650124 GCGGGCACTACGACAGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
65 GCGGGCACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
** * *
4650189 TTTAGGCACATCTTCATATTTCTGTGTACCAATGCCATTTTTATGGCTTGTAAATTCATACAGTG
130 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * * *
4650254 GTCCCTAAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTTTATTTTTCACGATATTC
195 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTG
*
4650319 AAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
260 AAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
4650384 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAGCAATTCAACTAAAAACTCGAAGTGTGCA
325 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAGCAATTCAACTAAAAACTCGAAGTGTGCA
4650449 AGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTTAAACACTTTAATGGCTACTGGCAGCTAA
390 AGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTTAAACACTTTAATGGCTACTGGCAGCTAA
4650514 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
4650579 CCAATATAAGGGCCAAGTACCAGCACCCACCACACATCATGTGCGTACAGGTCCCCCGGCCCCCC
520 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA--CCCCCCGGCCCCCC
* ** *
4650644 CGCTCGTTGGAACCCCAATGCCGCCAGTCAGGTTCTCCAACGAAGCTCCGACGATGGTGCCCCGA
583 CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT----------T-CGACGATGGTGCCCCGA
** * * * *
4650709 CGAAGAAAAATGCGGCACCAATACATGCTCGAGCCTAGAATGTGCTGCCACAATCCTTGGTCCGA
637 CGAAGAAAAATGCGG-ACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAA-CCTCGGTCCGA
* *
4650774 TCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGCGAATGAACTCCGTATGCCTAAGT
700 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * * *
4650839 TAACCCACGAAACGAGCGTACGGATGCTCAGCCGCGGCCAGAGGAGCGGGATGCGCAAGTCGGGC
765 CAACCCACGAAATGAGCGTGCGGGTGCTCAG--ACGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * *
4650904 ATCGA-TCGGGTCCCCCTCTACGTGGTATCGATCCTGCTGCTGCAACCCTCGGTCTGGTCCAAT
828 ATCGACT-GGGT-CCCCTCTACATGCTATCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCAAT
* * * * *
4650967 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAATCGTCGAAATGAACGGGCGGGCGGGCGGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGGCGGGCGG-
* * * *
4651032 CGGGTGGCACTACGCCGGCCAAAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTG
65 -GCG-GGCACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
** * * *
4651097 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGTGAGTTTTAAGCCTTGTAAATTCATACAA
128 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
4651162 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATATTTCACGATTT
193 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC-AATT
*
4651227 TTG-AAACTTTTTGCCGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
257 TTGAAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
4651291 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAGCAATTCAACTAAAAACTCGAAGTGT
322 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAGCAATTCAACTAAAAACTCGAAGTGT
* *
4651356 GCAAGATTTTGTAACCATTTGGAAAAAGTGTCCCCATTTTAAACACTTTAATGGCTACTGGTAGC
387 GCAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTTAAACACTTTAATGGCTACTGGCAGC
*
4651421 TAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG-GAGTTTGATGAGGGATAG
452 TAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG-GTTTGATGAGGGATAG
*
4651485 GGGGCCAATATAAGGGCCAAGTACCCA-CACCCATCGCACATCATGTGCGCACACCCCCCTGGCC
516 GGGGCCAATATAAGGGCCAAGTA-CCAGCACCCATCACACATCATGTGCGCACACCCCCC-GGCC
* * *
4651549 CCCCCGATCGCCGGAACCCTATTGCTGCCGGTCAGGTTCTTCGACGATGGTGCCCCGACGAAGAA
579 CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGATGGTGCCCCGACGAAGAA
** * *
4651614 AAATATGGTACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCGTCGGTCCGATCCGATC
644 AAATGCGG-ACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACC-TCGGTCCGATCCGATC
* *
4651679 TTAGACTGGGAATGAACTTCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
707 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * *
4651744 CGAAATGAGCGTGCGGGCGCTCAGACGGCTAGAGGGGTGGGATACGTAAGCCGGGGATCGACTGG
772 CGAAATGAGCGTGCGGGTGCTCAGACGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGG
*
4651809 GTCTCCCTCTACATGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCAAT
837 GTC-CCCTCTACATGCTATCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCAAT
* **
4651863 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGTGGGTAGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGGCGGGCGGG
* * * **
4651928 TGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATACAGTGGTAGGTGGGT
66 CGGGCACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
4651993 TTAGGAACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
4652058 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCGTTTTCTATTTTTCACAATTTTGA
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTGA
* * * *
4652123 AAACTTTTTGCGGTT-TAGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGT
261 AAACTTTTTGCAGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * * *
4652187 AGACGTGATCCTTCTATTTTTGTTGGCATGCACAAA-AACATTCAGCTAAAAACTCAAAGTGTAC
325 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAGCA-ATTCAACTAAAAACTCGAAGTGTGC
* * * * * *
4652251 AAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTTATTGGCTACTGGCAGCAA
389 AAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTTAAACACTTTAATGGCTACTGGCAGCTA
* *
4652316 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGA
454 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
4652381 GCCAATATAAGGGCCAAGTACAAGCACCCATCACACATCATGTGCGCACACCCCCCGG-CCCCCC
519 GCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCC
* * *
4652445 GATCACCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGAT
584 GATCGCCGGAACCCCAATGCCGCCGGTC-A-------GGT--T-CTTCGACGATGGTGCCCCGAC
*
4652510 GAAGAAAAATGCGGACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGATC
638 GAAGAAAAATGCGGACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAA-CCTCGGTCCGATC
* * * *
4652575 CGATCTTAGACTGGGACTGAAC-CCTGTATGCTTAGATTGGGAATGATCTTCGTATGCCTAAGTC
702 CGATCTTAGACTGGGAATGAACTCC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
4652639 AACCCACG-AATCGACCGTGTGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCACAGGCCGAGGAT
766 AACCCACGAAAT-GAGCGTGCGGGTGCTCAGACGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * * **
4652703 CGGCTGGGTCCACCTCTACGA-GCTGTCGATCCTACTACCGTAACCCTCGGTCCGGTCTGAT
830 CGACTGGGTCC-CCTCTAC-ATGCTATCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCAAT
* *
4652764 CTTACACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
4652791 GCAAGTCGGG
Statistics
Matches: 1628, Mismatches: 164, Indels: 70
0.87 0.09 0.04
Matches are distributed among these distances:
891 30 0.02
892 13 0.01
893 453 0.28
894 3 0.00
895 1 0.00
896 135 0.08
897 3 0.00
898 155 0.10
899 4 0.00
900 5 0.00
901 224 0.14
902 34 0.02
907 54 0.03
908 8 0.00
909 40 0.02
910 460 0.28
911 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (889 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGGCGGGCGGG
CGGGCACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTGA
AAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAGCAATTCAACTAAAAACTCGAAGTGTGCAA
GATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTTAAACACTTTAATGGCTACTGGCAGCTAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGA
TCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGACGATGGTGCCCCGACGAAGAAAAATGCG
GACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCTCGGTCCGATCCGATCTTAGACTGG
GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAG
CGTGCGGGTGCTCAGACGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCTCT
ACATGCTATCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCAAT
Found at i:4656209 original size:26 final size:26
Alignment explanation
Indices: 4656173--4656225 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4656163 CTGGTCCAAT
* *
4656173 CTTAGATTGGGGATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
4656199 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
4656225 C
1 C
4656226 CGAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:4657117 original size:26 final size:26
Alignment explanation
Indices: 4657066--4657118 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4657056 CCGATCCGAT
*
4657066 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGATTGGGAATGAACTCCATATG
*
4657092 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCATATG
4657118 C
1 C
4657119 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCATATG
Found at i:4657815 original size:26 final size:26
Alignment explanation
Indices: 4657786--4657838 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4657776 CCCGTCCGAT
4657786 CTTAGACTGGGAATAAACTCCGCATG
1 CTTAGACTGGGAATAAACTCCGCATG
* *
4657812 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGCATG
4657838 C
1 C
4657839 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGCATG
Found at i:4659516 original size:26 final size:26
Alignment explanation
Indices: 4659468--4659517 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
4659458 GTTCGATCTC
*
4659468 AGACTGGGAATGAACTCTGTATGCTT
1 AGACTGGGAATGAACTCTATATGCTT
4659494 AGACTGGGAATGAACT-TCATATGC
1 AGACTGGGAATGAACTCT-ATATGC
4659518 CTAAGTGAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (26 bp):
AGACTGGGAATGAACTCTATATGCTT
Found at i:4662086 original size:26 final size:27
Alignment explanation
Indices: 4662057--4662114 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 27
4662047 CCTGTCTGAT
*
4662057 CTTAGACTGGGAATGAACTCTGTATG-
1 CTTAGACTCGGAATGAACTCTGTATGC
*
4662083 CTTAGACTCGGAATGAGCTCTGTATGC
1 CTTAGACTCGGAATGAACTCTGTATGC
4662110 CTTAG
1 CTTAG
4662115 TCAACCCACA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 24 0.83
27 5 0.17
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (27 bp):
CTTAGACTCGGAATGAACTCTGTATGC
Found at i:4664782 original size:25 final size:26
Alignment explanation
Indices: 4664739--4664790 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
4664729 CCGGTCTGAT
4664739 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4664765 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4664790 C
1 C
4664791 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 18 0.69
26 8 0.31
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4665667 original size:26 final size:26
Alignment explanation
Indices: 4665630--4665689 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
4665620 CCTCGGTCTG
4665630 GTCTG-AT-CTTAGACTGGGAATGAA
1 GTCTGTATGCTTAGACTGGGAATGAA
4665654 GTCTGTATGCTTAGACTGGGAATGAA
1 GTCTGTATGCTTAGACTGGGAATGAA
* *
4665680 CTCCGTATGC
1 GTCTGTATGC
4665690 CTAAGTCAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 25 0.78
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
GTCTGTATGCTTAGACTGGGAATGAA
Found at i:4670486 original size:26 final size:26
Alignment explanation
Indices: 4670449--4670498 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
4670439 GTCTGATCTT
* *
4670449 AGACTGGTAATGAACTTCGTATGCTG
1 AGACTGGGAATGAACTCCGTATGCTG
4670475 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
4670499 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTG
Found at i:4672228 original size:26 final size:26
Alignment explanation
Indices: 4672190--4672242 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4672180 CCGATCTGAT
*
4672190 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
4672216 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
4672242 C
1 C
4672243 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:4673736 original size:867 final size:867
Alignment explanation
Indices: 4670177--4673990 Score: 4514
Period size: 867 Copynumber: 4.4 Consensus size: 867
4670167 CCCTCTGCGT
4670177 GCAAACCTGTAAAATCTCAAATG-TACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
1 GCAAACCTGTAAAATCTCAAATGCT-CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
4670241 AGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGCGCATCATGTGCGCACACTCCCCGCCC
65 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCGCCC
* * * *
4670306 CCATCGATCGCCGGAACCCTAATGCCGCCGGTCAAGTTTTCCGATGATGCTCCGACGATGGTGCC
129 CC--CGATCGCCGGAACCCCAATGCCG-CGGTCAAGTTCTCCGACGATGCTCCGGCGATGGTGCC
* * * *
4670371 CCAAGGAATAAAAATGCGGCACCAGCACATGCTCTAGCC-CAGCATGTGCTGCTGCAACCCTCGA
191 CCGACGAAGAAAAATGCGGCACCAGCACATGC-CCAGCCGCAGCATGTGCTGCTGCAA-CC-C--
*
4670435 TCTAGTCTGATCTTAGACTGGTAATGAACTTCGTATGCTGAGACTGGGAATGAACTCCGTATGCC
251 TC-A----G---TT---CTGG---T---C--CG-AT-CTTAGACTGGGAATGAACTCCGTATGCC
* * * * * *
4670500 TAAGTCAACCCACGAAACGAGCGTACAGGTGCCCAGCCGGCCAAAGGGGCGGGATGCGCAAG-CT
295 TAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGTC-
* * * * * *
4670564 G-GGCATCGA-CTGGGCCCCCCTCTATGTGCTGTCGATCCTACTGCCGCAACCCTCGGTTCAATC
359 GAGG-ATCGATC-GGGTCCCCCTCTACGTGCTGCCGATCCTACTACCGCAACCCTCGGTCCAGTC
* *
4670627 CAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGAGCGGGCGGG
422 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-GAGCGAGCGGGCGGG
* * *
4670692 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTTGGT
486 CGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
4670757 TTAGTCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATATAATGG
551 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATGCATACAATGG
*
4670822 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTAACGATTTTTG
616 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
** * * * *
4670887 AAACTTTTTAAAGTTCGGGATTTTCCAAAATGTTTTCAGAAGGATTTTTGGTCCCAAACTTGGTA
681 AAACTTTTT-AAGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
4670952 GACGTGATCCCTATATTTTTGTTGGCATGCACAAAATAATTCAGCTAAAAACTCGAAGTGTACAA
745 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAAGTGTACAA
* * *
4671017 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGTTACTGGTA
809 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
4671076 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
1 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
4671141 GGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCAGCCCC
66 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-GCCCC
* * * * * * *
4671206 CCGATCGTCTGAACCCCAATGCCATCGGTCAAGTTCTCTGACGATGCTCTGGTGATGGTACCCCG
130 CCGATCGCCGGAACCCCAATGCC-GCGGTCAAGTTCTCCGACGATGCTCCGGCGATGGTGCCCCG
* * *
4671271 ACGAAGAAAAATGCGGCACCAGCACATGTTCGAG-CGCAGCATGTGCTGCTGCAACCCTC-GGTC
194 ACGAAGAAAAATGCGGCACCAGCACATG-CCCAGCCGCAGCATGTGCTGCTGCAACCCTCAGTTC
* * * *
4671334 CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCATGAAACGAGCGTGCGG
258 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGG
* * ** * * * *
4671399 GTGCTCAGCCGGCCAGAGGGGCGGGATATGCAAGTCGAGGATCGGTTGGGTCCCCTTCTGCGTGC
323 GCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGATCGGGTCCCCCTCTACGTGC
* * * * ** *
4671464 TGTCGATCCTACTACTGCAACCCTCAGTCCGGTCTGATTTTAGACTGGGAATGAACTCCGTATGC
388 TGCCGATCCTACTACCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
* *
4671529 CTAAGCCAACCGACGAAAGTAGCGGGCGGGGGGAGGCGAGCGGGCACTACGTCGGCCAGAGAGAC
453 CTAAGCCAACCGACGAAAG-AGCGAGC-GGGCG-GGCGA----GCACTACGTCGGCCAGAGAGAC
* * *
4671594 GGGATGCGTAAGCAGTGGATCGATA-----G--GGT-GG--TAGGCACATCTTCATATTTCTGTG
511 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG
4671649 TGCCAATGCCATTTTTATGGCTTGTAAATGCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
576 TGCCAATGCCATTTTTATGGCTTGTAAATGCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* *
4671714 CATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAATTTTTTACAGTTCGGGATTTTT
641 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA-AGTTCGGGATTTTT
* * * ** * * *
4671779 TTAAATTTTTTTGGAAGGTGTTTTCTCCCCAAACTTGGTAGACGTCACCCTTGTATTTTTTTTGG
705 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
4671844 CATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
770 CATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
4671909 TCCACATTTCAGACACTTTAATGGCTACTGGTA
835 TCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * *
4671942 GCAAACTTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTTTCAAGGTTTGATGAGGGATA
1 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
4672007 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-------CCCC
66 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGCCCCC
* * * *
4672065 CGATCACCGAAACCCCAATGCTGCTGGTCAGGTTCTCCGACGA---T--GGC-A-----CCCCGA
131 CGATCGCCGGAACCCCAATGCCGC-GGTCAAGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGA
4672119 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC-CAGCATGTGCTG-TCGCAACCCTCGGTCC
195 CGAAGAAAAATGCGGCACCAGCACATGCCC-AGCCGCAGCATGTGCTGCT-GCAA-CC-C--T-C
* *
4672182 GATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAA
253 -A---G---TT---CT--G---G---TCC-GAT-CTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
4672247 GTCAACCCATGAAATGAGCGTGCGGGCGCTCAGGCAGCCAGAGGGGCGGGATGCGCAAGCCGATG
298 GTCAACCCATGAAACGAGCGTACGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGTCGAGG
* * * * * * * **
4672312 ACCGATCGGATCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATTCGGTCTGATCT
363 ATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTACTACCGCAACCCTCGGTCCAGTCCAATCT
* * * * *
4672377 TAGACTGGAAACT-ACCTCCGTATGCCTAAGCCAACAGATGAAAGTAGCGGGCGTGCGGGCGGGC
428 TAGACTGGGAA-TGAACTCCGTATGCCTAAGCCAACCGACGAAAG-A----GCGAGCGGGCGGGC
* * * * *
4672441 GGGCACTACATCGGCCAGAGAGACGGGAAGCGCAAGCCGTGGGTCGATAGTGTGGTAGGTGGGTT
487 GAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
4672506 TAGGCACATCTTCATATTTCT--GTG----TGCC------A------GTAAATGCATACAATGGT
552 TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATGCATACAATGGT
*
4672553 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGA
617 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
** * * *
4672618 AACTTTTTCGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCTAACTTGGTAGA
682 AACTTTTTAAGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
4672683 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
747 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
4672748 TTTATGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCA
812 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
4672804 GCAAACCTGTAAAATCTCATATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
1 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* **
4672869 GGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCAGCCTT
66 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-GCCCC
* * * * *
4672934 CTGATCGCCTGAACCCCAATGCCGTCGGTCAAGTTCTCTGACGATGCTCCGGCGATTGTGCCCCA
130 CCGATCGCCGGAACCCCAATGCCG-CGGTCAAGTTCTCCGACGATGCTCCGGCGATGGTGCCCCG
* * *
4672999 ACGAAGAAAAATGCAGCACCAGCACATGCCCAACCGTAGCATGTGCTGCTGCAACCCTCAG-TCT
194 ACGAAGAAAAATGCGGCACCAGCACATGCCCAGCCGCAGCATGTGCTGCTGCAACCCTCAGTTCT
* *
4673063 GGTCCGATCTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACT-AAACGAGTGTACGG
259 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-TGAAACGAGCGTACGG
* * * * *
4673127 GCGCTTAGCCAGCCAGAGGGGTGGGATGCGTAAGTCGAGGATCGATCGGGTCCCCCTCTATGCGC
323 GCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGATCGGGTCCCCCTCTACGTGC
* * * * * * *
4673192 TGCCGATCCTACTGCCGCAACCATCGGCCCAGTCCAATTTTAGACTGGCAATGAACTACATATGC
388 TGCCGATCCTACTACCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
*
4673257 CTAAGCCAACCGACG-AA-AG-GAGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGC
453 CTAAGCCAACCGACGAAAGAGCGAGCGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGC
*
4673319 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
518 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAAT
* * *
4673384 GCCATTTTTATGGCTTGCAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
583 GCCATTTTTATGGCTTGTAAATGCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * * *
4673449 AGACGACTCGTTTTTTATTTTTCACAATTTTTGAAACTTTTTGTAGTTCAGGATTTTTTAAAACT
648 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-AAGTTCGGGATTTTTTAAAATT
* * *
4673514 TTTTCGGAAGGAGTTTTGGCCCCAATCTTGGTAGACGTGATCCTTGTATTTTTGTTGGTACGCAC
712 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
*
4673579 AAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
777 -AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
4673644 TTTTAGACACTTTAATGGCTACTGACA
841 TTTCAGACACTTTAATGGCTACTGGCA
* * * *
4673671 GCAAACCTATAAAATCTCAAACGCTTTTTAACGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
1 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
** **
4673736 GCAGGCCAATATAAGGGCCAAAAACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
66 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-G-CC
* * * ** * *
4673801 CCCCGATCGTCGGAACCCTAATGCCGCAGGTAAAGTTCTCCGGTGATGCTCCGACAATGGTGCCC
128 CCCCGATCGCCGGAACCCCAATGCCGC-GGTCAAGTTCTCCGACGATGCTCCGGCGATGGTGCCC
** * * * *
4673866 CGGGGAAGAAAAATACGGCACCAGCAAATGCCTGAGCCG-AGCATGTGCTGCTGCAACCCTC-GA
192 CGACGAAGAAAAATGCGGCACCAGCACATGCC-CAGCCGCAGCATGTGCTGCTGCAACCCTCAGT
* * * * * *
4673929 TCTGGTCTGATCTTATATTGGGAATGAACCCCGTATGCCTAAGCCAACCGATGAAACGAGCG
256 TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
4673991 GGCAGGTGGG
Statistics
Matches: 2531, Mismatches: 273, Indels: 252
0.83 0.09 0.08
Matches are distributed among these distances:
846 2 0.00
847 142 0.06
848 4 0.00
849 4 0.00
851 1 0.00
852 3 0.00
853 6 0.00
854 3 0.00
855 166 0.07
856 3 0.00
857 5 0.00
858 37 0.01
859 1 0.00
860 2 0.00
862 277 0.11
863 90 0.04
865 88 0.03
866 275 0.11
867 397 0.16
868 10 0.00
869 155 0.06
870 44 0.02
871 224 0.09
872 13 0.01
873 186 0.07
874 1 0.00
875 13 0.01
876 7 0.00
877 50 0.02
878 4 0.00
879 6 0.00
880 5 0.00
881 72 0.03
882 1 0.00
884 1 0.00
887 1 0.00
893 2 0.00
895 1 0.00
896 3 0.00
897 98 0.04
898 4 0.00
899 123 0.05
900 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (867 bp):
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGCCCCC
CGATCGCCGGAACCCCAATGCCGCGGTCAAGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAC
GAAGAAAAATGCGGCACCAGCACATGCCCAGCCGCAGCATGTGCTGCTGCAACCCTCAGTTCTGG
TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCG
CTCAGCCAGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGATCGGGTCCCCCTCTACGTGCTGC
CGATCCTACTACCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTA
AGCCAACCGACGAAAGAGCGAGCGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCA
AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
ATTTTTATGGCTTGTAAATGCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGTTCGGGATTTTTTAAAATTTTTT
CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCA
Found at i:4674678 original size:26 final size:26
Alignment explanation
Indices: 4674649--4674701 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
4674639 CTGGTCCGAT
*
4674649 CTTAGACCGAGAGTGAACTCCGTATG
1 CTTAGACCGAGAATGAACTCCGTATG
** *
4674675 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACCGAGAATGAACTCCGTATG
4674701 C
1 C
4674702 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACCGAGAATGAACTCCGTATG
Found at i:4676436 original size:26 final size:26
Alignment explanation
Indices: 4676400--4676451 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
4676390 TGGTCTGATG
4676400 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
4676426 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
4676452 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:4676855 original size:869 final size:863
Alignment explanation
Indices: 4674002--4677102 Score: 3652
Period size: 868 Copynumber: 3.6 Consensus size: 863
4673992 GCAGGTGGGT
* * * *
4674002 GGGCGGGC-ACTATGCCGGCCAGAGAGACGAGATGCGCAAGCCCTGGATGGATCGGGTGGTAGGT
1 GGGCGGGCGACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * *
4674066 GGGTTTAGGCAAATCTTCATATTTTTTTCATGCCAATGCCATTTTTATGGCTTGTAAATTCGTAC
66 GGGTTTAGGCACATCTTCATA-TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
4674131 AATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGAT
130 AATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* *
4674196 TTTTGAAACTTTTTACTGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACA
195 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * * * *
4674261 TGTTAGACGTGATCCTTTTTTTTTTGTTGGCATGCACAAAAAACTTCAGCTAAAAACTTGAAGTG
260 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * * *
4674326 TACAAGATTTTGGGACCATTTGAAAAAAGTGT-CCCACTTCAAACACTTTAATGGCTACTGACAG
325 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
4674390 CAAAACCTATAAAATCTCAAATGGC-CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
390 C-AAACCTGTAAAATCTCAAAT-GCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
* *
4674454 AGAGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCTGGC
453 AG-GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCTGGC
* * * *
4674519 CCCCCCGATCGCTA-GAACCCCAATGCCGTCGGTCAGG-T-T-CT-TCGATGATGGTGCCCCGAT
516 CCCCCCGATCTC-AGGAACCCCAATGTCGTCGGTCAGGTTCTCCTGTCGACGATGGTGCCCCGAA
* * ***
4674579 GAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCTAGCATGTGCTATTGCAACCCTCGGTCTGG
580 GAAGAAAAATGTGGCACCAGCACATGCCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGG
* * * * *
4674643 TCCGATCTTAGACCGAGAGTGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGT
645 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* ** * * ** *
4674708 TAACCCAC-G-TAAT-A-AGTGTGCAGGCGCTTAGCCAGCTATAGGGGCGGGATGCGA--AAGTC
710 CAACCCACAGCCGATCAGAG-GGGC-GG-G-AT-G-C-GC-A-AGTCG-GGGAT-CGATCGAGTC
*** * * ** * * *
4674767 GAGC-ATCAGT-CGA-G-TCCCCCTCTGCATCCCTCAGTCTAGTCTGATCTTAGACTAGGAATGA
764 CCCCTATAAGTGCTACGATCCTACTCCGCAACCCTCAGTCCAGTCTGATCTTAGACTAGGAATGA
* *
4674828 ACTCCATATGCCTAAGCCAACCGACGAAATCAGCGGGC
829 ACTCCGTATGCCTAAGCCAACCGACGAAA-CA--GAGC
* * * *
4674866 GGGCGGGCGGGCGTTACGCCGGCCAGAGGGACGGGATGCGCAAGCCGTGGATCGGTAGGGTGGTA
1 GGGCGGGC-GAC--TACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * **
4674931 GGTGGGTTAAGGCACATCTTCATGTTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
63 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * *
4674996 ACAATGGTCCCTTAAGCCTTAACGTGAAGTTTTAATGGCAAGACAACTCGTTTTCTATTTTTCAT
128 ACAATGGTCCCTTAAGCCTTCACATGAAG-TTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
4675061 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
192 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
*
4675126 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATTCA-AAAAAAACTTCAGCTAAAAACTCGA
257 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAACTCGA
* *
4675190 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAGTTCAGACAC-TTATTGGCTACTA
321 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT-
*
4675254 AGCAGCAAACCTGT-AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG-TGAGG
385 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
* * *
4675317 GATAGGGGCCAATATGAGGGCCAA-T-GCAACAGCCCATCGCACATCAT-TGCGCACA----CT-
450 GATAGGGGCCAATATAAGGGCCAAGTACCAGCA-CCCATCGCACATCATGTGCGCACACCCCCTG
* * *
4675374 -----CCCGATCGTCAGGAACCCC-ATATCATCGGTCA-GTGTCTCC-G--G-CGATGGTGGCCC
514 GCCCCCCCGATC-TCAGGAACCCCAATGTCGTCGGTCAGGT-TCTCCTGTCGACGATGGTGCCCC
* * * * *
4675428 AAAGAAGAAAAATATAGCACCAGCACATGCC-CGAGCCCAACATGTGCTGCCGTAACCCTCGGTC
577 GAAGAAGAAAAATGTGGCACCAGCACATGCCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * * * * * *
4675492 CGAT-TCGATCTTAGACTGGGAATGAACTCCATATGCTCAGACTGGTAATGAATTTCGTATGCCT
642 TGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * *** *
4675556 AAGTCAACCCACGAAACGAGCGCGCGGGCGCTCAGCCAGCCAGAGGGGTGGGATGCATGAGTCGA
706 AAGTCAA-CC-C---AC-A----------GC-C-G--A-TCAGAGGGGCGGGATGCGCAAGTCGG
* * * * * * * *
4675621 GGATC-AGTCGAGTCCCCCTCTACGTGCTGCCCATCCTACTGTCGCAACCCTCAGTTCGGTTTGA
750 GGATCGA-TCGAGTCCCCCTATAAGTGCT-ACGATCCTACT-CCGCAACCCTCAGTCCAGTCTGA
* *
4675685 TCTTAGAGTAGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGCAGGC
812 TCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AG-A-GC
* * * * *
4675740 GGGCCGGCGGGTACTATGCCGGCCAGAGAGGCGAGATGCGCAAGCCATGGATCGATAAGGTGGTA
1 GGG-CGG-GCG-ACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * *
4675805 GGTGGGTTTAAGCACATCTTCATATTTCTGCCTCCCAATGCCCTTTTTATGG-TATGTAAATTCA
63 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT-TGTAAATTCA
**
4675869 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
127 TACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * * * *
4675934 AATTTTTAAAACTTTTTACGGCTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
192 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * * *
4675999 ACTTGGTAGACATGATCCTTGTATTTTTCTTGGCATGCA-AAAAATAATTTAGTTAAAAACTCGA
257 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGA
* *
4676063 TGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCCACTG
321 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
4676128 GCAGCAAACCTGTAAAATCTCAAATGCTC-TTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGAG
386 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
* *
4676192 ATAGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTGG
451 ATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGG
*
4676257 CCCCCCCGATCATC-GGAACCCCAATGTCGTCGGTTAGGTTCTCCGATGATGGTCCGACGATGGT
515 CCCCCCCGATC-TCAGGAACCCCAATGTCGTCGGTCAGGTTCTCC-----T-GT-CGACGATGGT
*
4676321 GCCCCGACGAAGAAAAATGTGGCACCAGCACAT-CCTCGAGCCCAGCATGTGCTGCCGCAACCCT
572 GCCCCGAAGAAGAAAAATGTGGCACCAGCACATGCCTCGAGCCCAGCATGTGCTGCCGCAACCCT
*
4676385 CGGTCTGGTCTGATGTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
637 CGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* *
4676450 GCCTAAGTCAACCCTCAGCCGATCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCC
702 GCCTAAGTCAACCCACAGCCGATCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGAGTCCCC
** * * * ** * *
4676515 CTATGTGTGCTACTGATCCTGCTACCGCAACCCTCGGTCCAATCCAATCTTAAACTGGGAATGAA
767 CTATAAGTGCTAC-GATCCTACT-CCGCAACCCTCAGTCCAGTCTGATCTTAGACTAGGAATGAA
*
4676580 CTCCGTATGCCTAAGCAAACCGACGAAACA-AGC
830 CTCCGTATGCCTAAGCCAACCGACGAAACAGAGC
* * *
4676613 GGGCAGGC-ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
1 GGGCGGGCGACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
4676677 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTTATTGCTTGTAAATTCATACA
66 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
4676742 ATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGACT
131 ATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-T
* *
4676807 TTTT-AAACTTTTTACGGTTCGGGATTTTTT-AAATTTGTTTTGGAAGGAGTTTTGGCCCGAAAC
195 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT-TTTCGGAAGGAGTTTTGGCCCCAAAC
4676870 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAACTCGAAGT
259 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
4676934 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGTTACTGGCA
324 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
4676999 GCAAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTAT-T-GAGGTTTGATGAGGGAT
389 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT-TCTCAAGGTTTGATGAGGGAT
* * *
4677062 AGGGGCCAATATAAGTGCCAAGTTCCAGCACCCCTCGCACA
453 AGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
4677103 GCAAGCCCGA
Statistics
Matches: 1902, Mismatches: 234, Indels: 199
0.81 0.10 0.09
Matches are distributed among these distances:
851 1 0.00
852 137 0.07
853 12 0.01
854 2 0.00
855 1 0.00
857 2 0.00
858 2 0.00
863 11 0.01
864 24 0.01
865 18 0.01
866 14 0.01
867 148 0.08
868 392 0.21
869 292 0.15
870 13 0.01
871 2 0.00
872 4 0.00
873 252 0.13
874 230 0.12
875 24 0.01
876 22 0.01
877 120 0.06
878 2 0.00
880 1 0.00
881 3 0.00
882 2 0.00
886 8 0.00
887 24 0.01
888 2 0.00
892 1 0.00
893 1 0.00
894 1 0.00
896 1 0.00
897 5 0.00
898 127 0.07
899 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (863 bp):
GGGCGGGCGACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCC
CGATCTCAGGAACCCCAATGTCGTCGGTCAGGTTCTCCTGTCGACGATGGTGCCCCGAAGAAGAA
AAATGTGGCACCAGCACATGCCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGAT
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACAGCCGATCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGAGTCCCCCTATAAGTGCTACG
ATCCTACTCCGCAACCCTCAGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
CAACCGACGAAACAGAGC
Found at i:4677188 original size:26 final size:26
Alignment explanation
Indices: 4677152--4677204 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4677142 CTAGTCCGAT
4677152 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
4677178 CTTAGACTGGGAATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
4677204 C
1 C
4677205 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:4678949 original size:26 final size:26
Alignment explanation
Indices: 4678911--4678963 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
4678901 CCAATCAAAT
4678911 CTTAGACTAGGAATGAACT-TCGTATG
1 CTTAGACTAGGAATGAACTCT-GTATG
*
4678937 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
4678963 C
1 C
4678964 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:4679866 original size:26 final size:26
Alignment explanation
Indices: 4679816--4679866 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
4679806 CTGGTCCGAT
* **
4679816 CTTAGATTGGGAATGAATTTTGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
4679842 CTTAGATTGGGAATGAACTCCGTAT
1 CTTAGATTGGGAATGAACTCCGTAT
4679867 CCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.10, G:0.25, T:0.37
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:4681637 original size:26 final size:26
Alignment explanation
Indices: 4681608--4681660 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4681598 CCGGTCTGAT
4681608 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4681634 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4681660 C
1 C
4681661 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4681810 original size:902 final size:902
Alignment explanation
Indices: 4677107--4695921 Score: 23999
Period size: 902 Copynumber: 21.1 Consensus size: 902
4677097 CGCACAGCAA
* * **
4677107 GCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTCTAGTCCGATCTTAGACTGGGAATGAACTC
1 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * * * *
4677172 TGTATGCTTAGACTGGGAATTAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCC
66 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * ** * * **
4677237 CTCAGTCGACCAGAAGGGTGGGATGCGCAAGCCAAGGATCAGTCGGGTCCCCCTCTGCATGCTAT
131 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
* * ** *
4677302 CGATCCTGCTGCCGCAACCCTCAGTCCGATCCAATCTTTGACTGGGAATGAACTCCGTATGCCTA
196 CGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
4677367 AGCCAACCGAC-AAA--A-TGAGCAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGAT
261 AGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* * * * *
4677428 GCGCAAG-CGATGGATTGATAAGGTAGTAGGTGGGTTTAGGCACATCTTCCTATTTCTGTGTGCC
326 GCGCAAGCCG-TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
* *
4677492 AATACCATTTTTATGGATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
390 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
** * *
4677557 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGA-GGTTTGGGATTTTTTTA
455 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-ACGGTTCGGGATTTTTTAA
* * * * * **
4677621 AATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGATGGACGTGATCCCTGTATTTTTTTTCACAT
519 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* * * * *
4677686 GCACAAAAAAATTCAACTAAAAACTCAAACTGTACAAGATTGTGTGACCATTTGAGAAAAGTGTC
584 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
4677751 CCCATTTCAGACACTTTATTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC-CTTTTAAGG
649 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGG
* * *
4677815 GGGTGTGAGTTCTTGAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCATGTACCAGCACCC
713 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * * * *
4677880 ATTGCATATCATTTGCGCACACCCCCCGGCCCCCCCGATTGTCGGAACCCCAATGCCGCCGGTCA
778 ATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCA
* * * **** *
4677945 GTTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCATTTCTAGCACAT
842 GGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
* *
4678006 GCCCGAGCCCAGCATGTGCTGTCGTAA----C---CC--T-CGATC-----C--GG--T---CT-
1 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * **
4678048 -G-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACAAGCACGCGGGCG
66 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * *
4678110 CTCAGCCGGCCAGAGGGGAGGGATGCGCAAGCTGGGGGATCGGTCGGGTGCCCCTCTGCATGTTG
131 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-CGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
* * * * ** *
4678175 CCGATCCTGCTGCTGCAACCTTTGGCCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCT
195 CCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* *
4678240 AAGCCAACCGACGAAACGAGCGGGTGGGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGA
260 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* *
4678305 TGCGCAAGCCGTGGATCGATAGCGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
325 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
* *
4678370 GATGCCATTTTTATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCAC-----GTTTCATG
390 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * ** * * ** *
4678430 GCAAGATGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGATTCAAGATTTTTTTAA
455 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
* * * * * *
4678495 ATTTTTTC-GAAGAAGTTTTAGCCGCAAACTTGGTAGAC-TGATCCTCGTATTTTTGTTAGCTTG
520 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
*
4678558 CACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
585 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * *
4678623 CCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAACGCTATTTAAGAGG
650 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
4678688 GTATGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
715 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * * * *
4678753 AGCACATTATGTGTGTACACCCCCCGGCCCCCCCGATCGCTGGTACCCCAATGTCGTCGGTCAGG
780 CGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG
* * * *
4678818 TT-T-------T--TCAG-TGATGGTGCCCCGACGAAGAGAAATGCGGCACCAGCACAT
844 TTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
** ** * *
4678866 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCAAATCTTAGACTAGGAATGAACTT
1 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* **
4678931 CGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCTTGAAACGAGCGTGCGGGCG
66 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * *
4678996 CTCAGCGGGCCAGAGGGGCGGGATGCGTATGTCGGTGATCGGTCGGGTCCCCCTCTGCGTGCTGC
131 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
* * ** ** * * *
4679061 CGATCCTACTGCCGTAACCCTCGGTCTAGTCCAATCTAAGATTGGGAATGAACTCTGTATGCCTA
196 CGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
4679126 AGCCAACCGACGAAAAGAGCGGGCGGGCAGGCGGTCGGGCACTACGCTGGCGAGAGAGACGGGAT
261 AGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* * *
4679191 GCGCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
326 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCA
* **
4679256 ATGCCATTTTTATGGCTCGTAAATTTGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
391 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* ** ** *
4679321 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTTTGGATTTTTTTAAA
456 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
* *
4679386 TTTTTTCGCAAGGAGTTTTGGCCCCAAACTTGGTAGACGTCATCCTT-TCATTTTTGTTGGCATG
521 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTGTTGGCATG
* * *
4679450 CACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGGAAAAAGTGTCC
585 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * *
4679515 CCATTTCTA-ACACTTTAATGGCTACTAGCAGTAAACCTGTAAAATCTCAAATGCTCTTCAAGGG
650 CCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
4679579 GGTGTGAGTTCTCGAGGTTTGATTAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
714 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * *
4679644 TCGCACATCATTTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCTAATGCCGTCGGTCA
779 TCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCA
* * ** * * **
4679709 GGTTCTCCGACAATGCTAC-ACCAGCA-CATGCCTCGGTGAAGAAAAATGCTACACCAGCACAT
842 GGTTCTCCGACGATGCTCCGA-C-G-ATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
* * * * *
4679771 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGATTGGGAATGAATTT
1 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * * * *
4679836 TGTATGCTTAGATTGGGAATGAACTCCGTATCCCTAAGTCAACCAACGAAACAAGTGTGCGGGCG
66 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * ** * * * *
4679901 CTCAGTCGGCCAGGGGGGTGGGATGCGCAAGCTGGGGATCGACCAGTTCCCCCTCCGCATGCTGC
131 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
* ** ** *
4679966 CGATCCTACTGCCATAACGAAT---TCC-GTAC-G--CTTAGACTGGGAATGAACTCTGTATGCC
196 CGATCCTGCTGCCGCAAC-CCTCGGTCCGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCC
** ** * *
4680024 TAAGCCAACCGACGAAACGA----GCGGGCGGGCAAGCAAGCACTACGCTGACCAGAGAGACGGG
259 TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
*
4680085 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
324 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGC
*
4680150 CAATGCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
389 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * *
4680215 GGCAAGATGACTCGTTTTCTATTTTTCA-TAATTTTGAAACTTTTTGCGGTTCGGGATTTTTT-A
454 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAA
** ** *
4680278 AATTTTTTCTTAAGGAGTTTTGGCCCCAAAAATGGTAGACGTGATCCTTGTTTTTTTGTTGGCAT
519 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* ** *
4680343 GCACAGAAAAATTCAGCTAAAAACTCGAAGTGTACATTATTTTGTGTCCATTTGAAAAAAGTGTC
584 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
4680408 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAAGGG
649 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * * * *
4680473 AGTGTGAATTCTCGAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTAGCAGCACGCA
714 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* *
4680538 TCGCACATCATGTGCGCACACCCCCC-GCCCCCCGATCACCAGAACCCCAATGCCGTCGGTCAGG
779 TCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG
* * * * * *
4680602 TTCTCCGACGATGCTCCGGCGGTAGAGCCACGGCGAAGAAAAATGCTGCACCAGCACAT
844 TTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
* *
4680661 GCCCAAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
1 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * * *
4680726 CGTATGCTTAGATTGGGAATGAACTCCATTTGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCA
66 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * * ** * * *
4680791 CTCAACCGACCAGAGGGGTGGGATGCCCAAGCAGGGGATCGACCAGGTCCCCCTCTACGTGCTGT
131 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
* ** ** ** * *
4680856 CGATCTTGCCACCGCAACCCTTAGTCCGGTCCAATCCTAGACTAGGAATGAACTCCGTATGCCTA
196 CGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * ** * * *
4680921 AGCCAACTGACGAAATGAGCGGGCGAACGGGCGGGCGGGCACTATGCCGACCAGAGAGACGTGAT
261 AGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
** *
4680986 GCATAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
326 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCA
**
4681051 ATGCCATTTTTATTTCTTGTAAATTCATACAATGG-CCTCTTAAGCCTTCACGTGAAGTTTCATG
391 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC-CTTAAGCCTTCACGTGAAGTTTCATG
* * *
4681115 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAA
455 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
* * *
4681180 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATCTTTGTTGGCATG
520 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * * *
4681245 CACAAAAACATTCAACTAAAAACTCAAAGTGTACGAGATTTTGTGACCATTTGAAAAAAGTGTCC
585 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
4681310 CCATTTCAGACAATTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGG
650 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
*
4681375 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
715 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * *
4681440 CGGACATCATGTTCGCACACCCCCCGGCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGT
780 CGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGT
* * *
4681505 TCTCC-AGTGATGCTCCGACGATGGTGCCGCGGCGAAGAAAAATGCGGCACCAGTACAT
845 TCTCCGA-CGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
* *
4681563 GCCCGAGCCCAGTATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
1 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * *
4681628 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGTGGGCG
66 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
** * * * *
4681693 CTCAATCGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCAGTCGAGTCCCCCTCTGCGTGCTGC
131 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
* * * * ** *
4681758 CAATCTTGCTGCCGTAACCCTTGGTTTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTA
196 CGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * *
4681823 AGCCAACCGACGAAATGAGCGGGCGGGCAGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGGA
261 AGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGAC-GGGA
** ** *
4681888 CACGCAAGTTGTGGGTCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
325 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
* * *
4681953 AATACAATTTTTATGGCTTGTAAATGCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
390 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * *
4682018 GCAAGACGACTCGTTTTTTATTTTTCACAATTTTGGAAACTTTTTACGG-CCTGGGATTTTTTAA
455 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-GGGATTTTTTAA
* * * *
4682082 AATTTTTTTGAAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAT
519 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* *
4682147 GCACAAAAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTC
584 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * *
4682212 CCCATTTCAGTCACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCACACGCTCTTTAAGGG
649 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
4682277 GGTGTGAGTTTTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
714 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * *
4682342 TCGCACATCATGTGCACACACCCCCTCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCA
779 TCGCACATCATGTGCGCACACCCCC-CGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCA
* * * * *
4682407 GGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACAAAGACAAATACGGCACCAGCACAT
842 GGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
* * * * * * *
4682468 GCCCGAGCCCAGCATGGGCTACCGCAGCCCTTGGTCCGGCCCGATCTTAGACTCGGAACGAACTC
1 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * *
4682533 CCTATGCTTAGACTGGGAAAGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCG
66 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * ** * * * * *
4682598 CTCAGCCGGCTAGAGGGGCAGGATGCACAAATCGGGGATCGATCGGGTCCCCTTCTACGGGCTAC
131 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
* * * * * *
4682663 CGATCCTGCTACCACAACCCTCAGTCCGGT-TCGATCTTAGACTGGGCATAAACTCCTTATGCCT
196 CGATCCTGCTGCCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
4682727 AAGCCAACCGACGAAACGAGCTGGCGGGCGAGCGGGCGGGCACTACACCGACCAGAGAGACGGGA
260 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * *
4682792 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATATCTGTGTGCC
325 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
* * * * * *
4682857 AATGCCATTTTTATGTCTTGTAAATTCATACAATTGTCTCTTAAGCCTTCATGCGAAGTTTCACG
390 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * ** * *
4682922 GTAAGACGACTCGTTTTCTATTTTTCACGACTTTCAAAACTTTTTACTGTTTGGGATTTTTTAAA
455 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
* * **
4682987 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTTTTGGTTTG
520 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * *
4683052 CACAAAAAAAGTCACCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
585 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
4683117 GCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGG
650 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * *
4683182 GTGTGAGTTCTCGAGG-TT--T----G--A---GGCCAATATAAGAGCCAAGTTCCAGTACCCAT
715 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* *
4683235 CGCACATCATGTGTGCACACCCCCCCTGGCCCCCCCGATCGCCAGAACCCCAATGCCG-CTGGTC
780 CGCACATCATGTGCGCACA-CCCCCC-GG-CCCCCCGATCGCCGGAACCCCAATGCCGTC-GGTC
* * * * ** *
4683299 AGGTTCTCTGGCGATACTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCAGAT
841 AGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
** *
4683361 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTC
1 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* *
4683426 CGTATGCTTAGA-TAGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGC
66 CGTATGCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * *
4683490 GCTTAGCCGGCCAGAGGGGCGGGATTCGCAAGCCGGGGATCGGCCCGGTCCCCTTCTGCGTGCTA
130 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
* * * ** * * * *
4683555 CCAATCCTGCTACCACAACCCTCGGTCCGGTCCAATGTTAGACTAGGAATGAACTTCATATGCCT
195 CCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * *** * * * * *
4683620 AAGCCAACCGACGAAATGAGCAGATAGGAGGGCGGGCAGGCAGTACGCCAGCCAGAGAGATGGGA
260 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * ** * *
4683685 TGCGCAAACCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCTTATCTTCATATTTGTGCATGCC
325 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
*
4683750 AATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
390 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* ** * *
4683815 GCAAGACGACTCGTTTTTTATTTTTCATAATTTTGGAAACTTTTTACGG-CCTGGGATTTTTTAA
455 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-GGGATTTTTTAA
* *
4683879 AATTTTTTCGAAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTGTT-TTGGCA
519 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT-TTGTTGGCA
* *
4683943 TGCACAAAAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGT
583 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * *
4684008 CCCCATTTCAGTCACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCACACGCTCTTTAAGG
648 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
4684073 GGGTGTGAGTTTTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
713 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * **
4684138 ATCACACATCATGTGCGCACACCCCCCAGCCCCTCGATCGTTGGAACCCCAATGCCGTCGGTCAG
778 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAG
* * * * *
4684203 GTTCTCTGATGATGCTCCGACGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCATAT
843 GTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
* * * * * * * *
4684263 GCTCGAGCCAAGCATCTGCTGTCGTAACCTTCGGTCCGGTCCAATCTTAGACTGGGATTGAACTC
1 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
*** * *
4684328 CGTATGCTTAGACTGGGAATGAACTCCGTACAACTAAGTCAACCCACAAAATGAGCGTGCGGGCG
66 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * * * *
4684393 CTCAGCCGGCCAGAGGGGCAGGATGCACAAGCTGGGGATTGGCCGGGTCCCCCTCTGTGTGCTAC
131 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
* ** **
4684458 CGATCTTGCTGCTACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTA
196 CGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * *
4684523 AGCCAACTGACGAAACAAG-GGGAAGGGCGGGTGGGCGGGCAATAC-CCTGACCAGAGAGACGGG
261 AGCCAACCGACGAAACGAGCGGG-CGGGCGGGCGGGCGGGCACTACGCC-GGCCAGAGAGACGGG
* *
4684586 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATATCTGCGTGC
324 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGC
* * * * *
4684651 CAATGCCATTTTTATGTCTTGTAAATTCATACAATTGTCTCTTAAGCCTTCACGCGAAGTTTCAC
389 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * * ** * *
4684716 AGTAAGACGACTCGTTTTCTATTTTTCACAACTTTCAAAACTTTTTACTGTTTGGGATTTTTTAA
454 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAA
*
4684781 AATTTTTTTC-GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCATGTATTTTTGTTGGCA
519 AA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* * *
4684845 TGCACAAAAAAAGTCACCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
583 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
4684910 CCGCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
648 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
*
4684975 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCA
713 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
*
4685040 ATCGCACATCATGTGCGCACACCCCCCGGCCCACCCGATCGCCGGAACCCCAATGCCGTCGGTCG
778 ATCGCACATCATGTGCGCACACCCCCCGGCCC-CCCGATCGCCGGAACCCCAATGCCGTCGGTCA
** * *
4685105 GGTTCTCCGGTGATGCTCCCG-CGATGGTGACCCGACGAAGAAAAATGCGGCACCAGCACAT
842 GGTTCTCCGACGATGCT-CCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
* * * * * *
4685166 GGCCGAGCCCAGCATGTGTTACCGCAACCCTCGGTCTGGTCCGATCTTAGTCTGGGAGTGAACTC
1 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
*
4685231 TGTATGC-----C------T--A---CG--T---T--GT---CCCACGAAACGAGCGTGCGGGCG
66 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * *
4685270 CTCAACCGGCCAGAGGGGAGGGATGCGCAAACCGGGGATCAG-CTGGCTCCCCCTCTGCGTGCTG
131 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTG
* * ** * ** **
4685334 CCAATCCTGCTACCGCAACCCTCAATCCAGTCTGATCTTAGACCAGGAATGAACTCCGTATGTGT
195 CCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
4685399 AAGCCAACTGACGAAACGA--------ACGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
260 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
** * * **
4685456 TGCGCAAGCCGTGGATCGATAGAATGGTTGGTGGGTTTAAGCACATCTTCATATTTCTATGTGCC
325 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
*
4685521 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATC
390 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * *
4685586 GCAAGACCAGTCGTTTTCTATTTTTCACGATTTTTGAAATTTTTTACGGTTCGGGATATTTTAAA
455 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
* * *
4685651 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTGTTTTTGTTGCCA-G
520 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * *
4685715 CAACAAAAAAATTCAGCTAAAAGCTCAAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTC
585 C-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
4685780 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
649 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
** ** *
4685845 GGTGTGAGTTCTCGAGGTTTCTTGAGGGATAGGGGGCCAATATAAAAGCCAAGTACCAGCACCGA
714 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * *
4685910 TCGCACATCATGTGCGCACA-CCCCCGGCCCTCCCGATCGCCGGAATCCAAATGTCGCCGTTCAG
779 TCGCACATCATGTGCGCACACCCCCCGGCCC-CCCGATCGCCGGAACCCCAATGCCGTCGGTCAG
* * *
4685974 GTTCTCCGACGATGCTCCGACGATGGTGCCTCGAG-GAAGAAAAATACGGCACCAGAACAT
843 GTTCTCCGACGATGCTCCGACGATGGTGCCCCG-GCGAAGAAAAATGCGGCACCAGCACAT
* * * * * * *
4686034 GCTCGATCCTAGCGTGTGCTGCCGCAACCCTC-GTCTGGTCCAATCTTAGATTGGGAATGAACTC
1 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * * * *
4686098 CCTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTGAACCCATGAAACAAGCGTGCGGCCG
66 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * * * *
4686163 CTC-GACCGGCCAGAGGGGCGGGATGTGTAAGCCGAGGATCAGCCGGGTCCCCCTCTGCATGCTA
131 CTCAG-CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
*** *
4686227 CCGATCCTGCTATTGCAACCCATTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG-C
195 CCGATCCTGCTGCCGCAACCC-TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * ** * ** *** * * * *
4686291 TTAG---ACTG--GGAATGAAC-TCCGTATGCCTAAGCCAACCGACGA-AACGAGCGGCCAGAGA
259 TAAGCCAACCGACGAAACGAGCGGGCG---GGC-GGGCGGGCGGGC-ACTACG-CCGGCCAGAGA
* * * * *
4686349 GATGGGATGCGCAAGTCGTGGATTGATAGGATGGTATGTGGGTTTAGGCACATCTTCATATTTCT
318 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
*
4686414 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
383 GCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* ** * *
4686479 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTCTCAAAACTTTTTGCGGTTCAGGATT
448 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
*
4686544 TTTTTAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
513 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * *
4686608 TGGCATGTACAAAAAAATTCAGCTAAAACCTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
578 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
4686673 AGTGTCCCCATTTCAGACACTTTAATAGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTT
643 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
4686738 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGCCAAGTACCAG
708 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * *
4686802 CACCCATCGCACATCATATGCGCACACCCCCCGGGGCCCCCCGATTGCCGAAACCCAAATGCCGT
773 CACCCATCGCACATCATGTGCGCACACCCCCC--GGCCCCCCGATCGCCGGAACCCCAATGCCGT
* *
4686867 CGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCAGGCGAAGAAAAATACGGCACCAGCAC
836 CGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCAC
4686932 AT
901 AT
* * *
4686934 GCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAGTCCGATATTAGACTGGGAATGAACTC
1 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * * *
4686999 CGTATGCTTAGACTGTGAATGAACTCCGTATGCCTAGGTCAACCCACGAAAAGAGCGTACGGGCA
66 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * * * * * *
4687064 CTCAACCGGCCAAAGGGGCAGGATGCGCAAGTCGGGGATCGATCGGGTCCCCTTTTGCATGCTGT
131 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
* * * ** **
4687129 CGATCCTGCTGCTGTAACCCTCAGTCCGGTCCAATCTTAGACTGGGAACAAACTCCGTATGCCTA
196 CGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* **
4687194 AGCCAACGGACGAAACGA--------GCGGGCGGGCGGGCACTACGTGGGCCAGAGAGACGGGAT
261 AGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
*
4687251 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCA
326 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCA
**
4687316 ATGTGATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
391 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
*
4687381 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
456 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
* ** *
4687446 TCTTTTCGGAAGGAGTTTTGG-CTAAAACCTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATG
521 TTTTTTCGGAAGGAGTTTTGGCCCCAAA-CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
*
4687510 CACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
585 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
4687575 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAACGGG
650 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
*
4687640 GTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
715 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * **
4687705 CGCACATCATGTGCGCACACCCCCCCGGCCCCTCGATCGTCGGAACCCTAATTCCACCGGTCAGG
780 CGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG
* * * *
4687770 TTCCCCGATGATGCTCCGACGATGGTGCCCTGGCGAAGAAAAATGCGGCACTAGCACAT
844 TTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
* * * * * * ** *
4687829 GCCCGAGCCCAACATGTGCTGCCGTAACCCTTGGTTCGATTCGATCCCAGACTGGGAATGAACTT
1 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * * *
4687894 CGTATGCTTAGACTGGGAATGAGCTCCATATGCCTAAGTCAACCCATGAGATGAGCGTGCGGGCG
66 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * * * * *
4687959 CTCAGTCGGCTAGAGGGGCGGGATGCGTAAGCTGAGGATTGGCCGGGTCCCCCTCTACGTGCT--
131 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
* * * *
4688022 -G---CTG-T-----AACCATCGGTCTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTA
196 CGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
4688077 AGCCAACCGACGAAACAAGCAGGCGGGTGGACGAGCGGGCGGGCACTACGTCGGCCAGAGAGATG
261 AGCCAACCGACGAAAC--G-A-GCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* *
4688142 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACAT
322 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGT
* *
4688207 GCCAATGCCATTTTTAAGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTC
387 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* ** **
4688272 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTCTCAAAACTTTTGGCGGTTCGGGATTTTTT
452 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT
*
4688337 AAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGTC
517 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * * *
4688401 GTGCATAAAAAAAATTCAGCTAAAACCTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
582 ATGCA-CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* *
4688466 GTCCCCCATTTCCAGACACTTTAATAGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
646 GT-CCCCATTT-CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * *
4688531 AAAGGGTTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAAC
709 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * *
4688595 ACCCATCGCACATCATGTTCGCACACCCCCCGACCCCCTCGATGGCCGGAACCCCAATGCTGCCG
774 ACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-CGATCGCCGGAACCCCAATGCCGTCG
* *
4688660 GTCAGGTTCT-C--C---G----G-CGATGGTGCCCAGGCGAAGAAAAATGCGG-AGCAGCACAT
838 GTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
* ** * * * * * * *
4688713 GCTCGAGCATAGCATGTGCTGTCGGAACCCTCAGTCTGGTCCAATATTAGATTGGGAATGAACTC
1 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * ** *
4688778 CGTATGCTTAGACTGCGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATAAGTGCG
66 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
** * ** * * * **
4688843 CTCAATCGGCCAGAGTGGCGGGATGCATAAGTCGGGGATCGGTCGGGTCCCTCTTTGCGTGCTAT
131 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
* * * * *
4688908 CGATCCTGCTACCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCGGTATGCCTA
196 CGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
** * * * * * * *
4688973 AGCCAATGGAC-AAA--A-----CGAGCGGGCAGGCGGGCACTATGTCGGTCGGAGAGACGGAAT
261 AGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* * *
4689030 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTACATATTTCTGCATGCCA
326 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCA
* *
4689095 ATGCTATTTTTATGGCTTGTAAATTCATACATTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
391 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
*
4689160 CAAGACGAATCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
456 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
* * *** * * * *
4689225 TTTTTTCGTAAGGAGTTTTCGCTAAAAACTTGGTAGATGTTATCCTTGTATTTTTTTTGGCTTGC
521 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
*
4689290 ACAAAAGAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
586 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
4689355 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAACGGGG
651 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
4689420 TGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
716 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * *
4689485 GCACATCATGTGCGCACACCGCCCCTGGCCCCCTCGATCGTCGAAACCCCAATTCC-ACTGGTCA
781 GCACATCATGTGCGCACACC-CCCC-GGCCCCC-CGATCGCCGGAACCCCAATGCCGTC-GGTCA
* ** *
4689549 GGTTCCCCGACGATGCTCC-AGCGATGGTGCTGCGACGAAGAAAAAT---------GC-C-T
842 GGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
* * * *
4689599 ----GAGCCCAGCATGTGCTGGCGCAACCCTCGGTCCGATTCGATCCTAGACTGGGAATGAACTC
1 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * * *
4689660 CGTATGCTTGGACTGAGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTG
66 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * ** * *
4689725 CTCAGTCGACCAAAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTAC
131 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
** * * *
4689790 CGATCCTGCTATCGTAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
196 CGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
4689855 AGCCAACCGACGAAACGAGCAGGTGGGTGGGCGAGCGGGCAGGCACTACGTCGGCCAGAGAGACG
261 AGCCAACCGACGAAACGAGC----GGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* * * *
4689920 GGATGCGTAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTTTACGT
322 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGT
4689985 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
387 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
** * ** * *
4690050 ATGGCAAGATAACTCGTTTCCTATTTTTCACGATTTTTGAAACTTTTTGTGGATCGAGATTTTTT
452 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT
* * *
4690115 AAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGAGATCCCTGTATTTTTGTTGGC
517 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
4690180 ATGTACAAAAAAAGTT-AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
582 ATGCACAAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* *
4690244 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATACTCTTTAA
646 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
4690309 GGGGGCGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
711 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * *
4690374 CCATCACACATCATGTGTGCACACCCCCCGGCCCCCCCGATC-ACGGAACCCCAATGCCG-CTGG
776 CCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTC-GG
*
4690437 TCAGGTTCT----C--TG----G-CGATGGTGCCCCGGCGAAGAAAAATGCGACACCAGCACAT
839 TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
** * * * ** *
4690490 GTTCGAGCCCAGCATATGCTGTCGGAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTC
1 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* *
4690555 CGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAGGTCAACCCACGAAACGAGCGTGCGGGCG
66 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* *** *
4690620 CTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCAAAGATCGGTCGGGTCCCCCTCTGTGT-CTTG
131 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGC-TG
* * * * * *
4690684 CCGATCCTGCTACCGCAACCTTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCT
195 CCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* ** * * * *
4690749 AAGCCAATCGACGAAACGAATGGACGGGCGGACGGGCGGGTACTACGCCAGCCAGAGAGACGGGA
260 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
*
4690814 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
325 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
*
4690879 AATGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
390 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * * * *
4690944 GCAAGACGACTCATTTTCTGTTTTTTACGATTTTTGAAACTTTTTGCAGTTTGGGATTTTTTAAA
455 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
* *
4691009 ATTTTTTCAGAAGG-GTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
520 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
4691073 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
585 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * *
4691138 CCATTTCAGACACATTGATGGCTACTGGCAGCAAACCAGTACAATCTCAAATGCTCTTTAAGGGG
650 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
** * * * *
4691203 GCATGAGTTCTCGATGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCATCCTT
715 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * *
4691268 CGCACATCATGTGCGCACACCCTCCCGGCCTCCCCGATCGTCGGTACCCCAATGCCGTCGGTTAG
780 CGCACATCATGTGCGCACACCC-CCCGGCC-CCCCGATCGCCGGAACCCCAATGCCGTCGGTCAG
* * * * *
4691333 GTTCTCTGGCGGTGCTCCGACGATAGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACAT
843 GTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
* * ** * *
4691393 GCCCGAGCCCAGCATGTGCTACCGCAGCCCTCGGTTTGGTCTGATCTTAGACTGGCAATGAACTC
1 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * * * * * * * * *
4691458 TGTATGTTTAAACTGGTAATGAACTGCATATGCCAAAGTCAACCCACCAAATGAGCGTACGGGTG
66 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* ** **
4691523 CTCAGTCGGCCAGAGGGGCGGGATGCGCAA-CCTGGGGATCGACCGGGTCCCCCTCTATGTGCTG
131 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
* * * * * **
4691587 CTGATCCAGCTGCCGTAACCCTCGGTCTGGTCTAATCTTAGACTAAGAATGAACTCCGTATGCCT
195 CCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
4691652 AAGCCAACCGACGAAACGATCGGGCGGGCGGACGGGCGGGCACTACGTCGGCC--AGAGACGGGA
260 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
*
4691715 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
325 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
4691780 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
390 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
** * * * *
4691845 GCAAGACGACTTATTTTTTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTGAAA
455 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
* * * *
4691910 ATTTTTTCGGAAGGAGTTTTGGCCCCGAACCTGGTAGACGTAATCCTTGTATTTTTGTTGGCTTG
520 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * *
4691975 CACAAAACAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCC
585 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
4692040 CCATTTCAGAGACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
650 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
4692105 GTGTCAGCTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
715 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
** * * * *
4692170 CATACATCATGTGCGCACACCCCCTGGCCCCCCCGATCGTCAGAACCCCAATTCCGTCGGTCAGG
780 CGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG
** * * ** * * *
4692235 TTCTCCGGTGATTCTTCGGTGATAGTGCCCCAGCGAAGAAAAATACGGCACCAGCACAT
844 TTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
* * ** * *
4692294 GCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTTTGATCTTAGGCTGGCAATGAACTC
1 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * * * *
4692359 TGTATGCTTAGACTGGTAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTG
66 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * ** *
4692424 CTCAACTGGCCAGAGGGGCGGGATACGCAA-CACGGGGATCGACCGGGTCCCCCTCTGTGTGCTG
131 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-CGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
* * * * * * * ** *
4692488 CTGATCCGGCAGCCACAATCCTCAGTCCGTTCTGATCTTAGACTAAGAATGAACTCCGTATTCCT
195 CCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
4692553 AAGCCAACCGACGAAACTATCGGGCGGGCGGGCGGACGGGCGGGCACTACGTCGGCC--AGAGAC
260 AAGCCAACCGACG-AA--A-CGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGAC
*
4692616 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
321 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG
4692681 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
386 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
** * * * *
4692746 CATGGCAAGATAACTCGTTTTTTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGAGATTTTT
451 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
* * *
4692811 TAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTCTTGG
516 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * * * *
4692876 CATGCATAAAAACATTCAGCTAAAAACTCGAGGTGTACAGGATTATGTGACCATTTGAAAAAAGT
581 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
4692941 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
646 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * * * * * *
4693006 AGGGGTATGAGTTCTCGAGGATTGATGAAGGATAGGGGGCAAATATAATGGCCAAGTAGCAGCAC
711 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * *
4693071 CCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCGATCGTCGGAACCCCAATGTCGTCGGTC
776 CCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTC
* * * *
4693136 AGGTTCTCCGACGATGCTTCCGACGATGGTGCCCCAGTGAAGAAAAATGCGGCACAAGCACCT
841 AGGTTCTCCGACGATGC-TCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
* * * ** *
4693199 ACCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCAGTTTGATCTTAGACTGGCAATGAACTC
1 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * *
4693264 CGTATGCTTCGACTGGGAATCAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCG
66 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
**
4693329 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGC
131 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
* * * * * *
4693394 CAATCCTGCTACCGTAACCCTTGTTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
196 CGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* *
4693459 AGCCAACCGACGAAACGA----GCAGGCGGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGAT
261 AGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* *
4693520 GCGCAGGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
326 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCA
* *
4693585 ATGCCATTTTTATGGCTTGCAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGG
391 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * *
4693650 CAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAA
456 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
*
4693715 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC
521 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * *
4693780 ACAAAAAAATTCAGCTAAAAAATCAAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
586 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
4693845 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCGCAAATGCTCTTTAAGGGGG
651 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
4693910 TGTGAGTTC-CTGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAC
716 TGTGAGTTCTC-GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * *
4693974 CGCACATCATGTGCGCACACCCCCCCACGCCCTCCCAATCGCCAGAACCCCAATGTCGCCGGTCA
780 CGCACATCATGTGCGCACA-CCCCCC-GGCCC-CCCGATCGCCGGAACCCCAATGCCGTCGGTCA
* * * * * * *
4694039 GGTTCTCCGGCGATGCTTCGGCGATGGTGCCCTC-GCGAAGAAAAATTCAGCACTAGCAAAT
842 GGTTCTCCGACGATGCTCCGACGATGGTGCCC-CGGCGAAGAAAAATGCGGCACCAGCACAT
* * *
4694100 GCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATTAACTC
1 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * *
4694165 CGTATGCTTAGGCTGGGAATGAACTTCGTATGCCTAAGTCAACCCAGGAAACGAGCGTGCGTGCG
66 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* *
4694230 CTCAGCCGGCCAGAGGGGCGGGATGCGTAAGACGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
131 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
* * * *
4694295 TGATCTTGCTGCC-CAACCCTTGGTCGGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCT
196 CGATCCTGCTGCCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
4694358 AAGCCAACCGACGAAA--A--GAGCGAGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
260 AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
*
4694419 TGCGCAAGCCGTGGAACGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
325 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
*
4694484 AATGCCA-ATTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
390 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * *
4694548 GCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAA
455 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
* * * *
4694613 ATTTTTTCGGAATGAGTTTTGGCCCCAAACCTGGTAGACGTGATCATTGTATTTTTTTTGGC-T-
520 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * *
4694676 CACACAAAACAATTCAGTTAAAAACTC-AATGTGTACAAGA-TTTGTGACCATTTGAAAAAATTA
585 CACA-AAAA-AATTCAGCTAAAAACTCGAA-GTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
4694739 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTATAAG
647 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
4694804 GGGGTGTGAGTTCTCAAGGTTTGATGATGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
712 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * *
4694869 CATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATTGCTGGAACCCTAATGCCGCCAGT
777 CATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGT
* * * * ** *
4694934 TAGGTTCTTCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATGACACCAGCACAT
840 CAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
*
4694997 GCCCGAGCCCAG-ATGTGCTACCGCAA----C---CC--T-CGA---T---CT--G-AT---CT-
1 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * *
4695038 -G-A-CCTTAGACTGAGAATGAACTCCGTATGCCCAAGTCAACCCACGAAACGAGTGTGCGGGCG
66 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * ** * * *
4695100 CTCAGCCGGCCA-AAGGGCAGGATGCATAAGTCGGGGATCGGTCGGGTCCCCGTCTGCATGCTGC
131 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
* * * *
4695164 CGATCATGCTGCCGCAACCCTCGATCAGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTA
196 CGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
*
4695229 AGCCAACCGACGAAACGA----GCGGGCGGGC-GGC---CACTACGCCGGCCACAGAGACGGGAT
261 AGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
*
4695286 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
326 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCA
* *
4695351 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTCAAGTTTAATGG
391 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* *
4695416 CAAGACGACTCATTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT-AAA
456 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
* * *
4695480 TTTTTTCGGAAGGAGTTTTGGCCCCAAACCTGGTAGAAGGGATCCTTGTATTTTTGTTGGC-TCG
521 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT-G
* * * * *
4695544 TACAAAACAATTCAGTTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTG-AAAAATTGTCC
585 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * *
4695608 CCATGTCAGACACTATAATGGCTACTGGCAGCAAACCTGTAAAATCCCAAATGCTTTTTAAGGGG
650 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
** **
4695673 GTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTTCAAGTACCAGCACCCAT
715 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * *
4695738 CACACATCATGTGCGCACACCCCCCCGGCTCCCTCGATCACCGGAACCCCAATGCCGTCGGTCAG
780 CGCACATCATGTGCGCACA-CCCCCCGGC-CCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAG
* * *
4695803 GTTATCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACAT
843 GTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
* * * * *
4695863 GCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTGGTCTGATCTTAGAATGGGAAT
1 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
4695922 TTACTTCGTA
Statistics
Matches: 15673, Mismatches: 1910, Indels: 679
0.86 0.10 0.04
Matches are distributed among these distances:
860 58 0.00
861 3 0.00
863 1 0.00
864 1 0.00
865 1 0.00
866 430 0.03
867 182 0.01
868 122 0.01
869 515 0.03
870 138 0.01
871 256 0.02
872 27 0.00
873 150 0.01
874 98 0.01
875 5 0.00
876 2 0.00
877 150 0.01
878 144 0.01
879 3 0.00
880 29 0.00
882 317 0.02
883 126 0.01
884 444 0.03
885 368 0.02
886 88 0.01
887 6 0.00
888 10 0.00
889 15 0.00
890 545 0.03
891 346 0.02
892 302 0.02
893 876 0.06
894 1017 0.06
895 1075 0.07
896 397 0.03
897 207 0.01
898 225 0.01
899 1088 0.07
900 595 0.04
901 1182 0.08
902 1442 0.09
903 884 0.06
904 432 0.03
905 1362 0.09
906 9 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
CGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
AGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCA
ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
GCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTT
CTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
Found at i:4682551 original size:26 final size:26
Alignment explanation
Indices: 4682513--4682565 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4682503 CCGGCCCGAT
* *
4682513 CTTAGACTCGGAACGAACTCCCTATG
1 CTTAGACTCGGAAAGAACTCCATATG
*
4682539 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTCGGAAAGAACTCCATATG
4682565 C
1 C
4682566 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (26 bp):
CTTAGACTCGGAAAGAACTCCATATG
Found at i:4683443 original size:26 final size:26
Alignment explanation
Indices: 4683406--4683458 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
4683396 CTAGTCTGAT
4683406 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4683432 CTTAGA-TAGGGAATGAACTTCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
4683458 C
1 C
4683459 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4684337 original size:26 final size:26
Alignment explanation
Indices: 4684308--4684357 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
4684298 CCGGTCCAAT
*
4684308 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4684334 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
4684358 CAACTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4686293 original size:26 final size:26
Alignment explanation
Indices: 4686264--4686316 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4686254 CCGGTCTGAT
4686264 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4686290 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4686316 C
1 C
4686317 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4687009 original size:26 final size:26
Alignment explanation
Indices: 4686980--4687031 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
4686970 CAGTCCGATA
4686980 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
4687006 TTAGACTGTGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
4687032 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:4687925 original size:26 final size:26
Alignment explanation
Indices: 4687877--4687926 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
4687867 ATTCGATCCC
* *
4687877 AGACTGGGAATGAACTTCGTATGCTT
1 AGACTGGGAATGAACTCCATATGCTT
*
4687903 AGACTGGGAATGAGCTCCATATGC
1 AGACTGGGAATGAACTCCATATGC
4687927 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCATATGCTT
Found at i:4688797 original size:26 final size:26
Alignment explanation
Indices: 4688759--4688810 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
4688749 TGGTCCAATA
* *
4688759 TTAGATTGGGAATGAACTCCGTATGC
1 TTAGACTGCGAATGAACTCCGTATGC
*
4688785 TTAGACTGCGAATGAACTCTGTATGC
1 TTAGACTGCGAATGAACTCCGTATGC
4688811 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGCGAATGAACTCCGTATGC
Found at i:4690571 original size:26 final size:26
Alignment explanation
Indices: 4690535--4690587 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4690525 CTAGTCTGAT
4690535 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4690561 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4690587 C
1 C
4690588 CTAGGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4692390 original size:26 final size:26
Alignment explanation
Indices: 4692339--4692391 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
4692329 CTGGTTTGAT
* **
4692339 CTTAGGCTGGCAATGAACTCTGTATG
1 CTTAGACTGGCAATGAACTCCATATG
*
4692365 CTTAGACTGGTAATGAACTCCATATG
1 CTTAGACTGGCAATGAACTCCATATG
4692391 C
1 C
4692392 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:4694174 original size:26 final size:26
Alignment explanation
Indices: 4694145--4694197 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4694135 CCGATCCGAT
*
4694145 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
4694171 CTTAGGCTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4694197 C
1 C
4694198 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4699789 original size:26 final size:26
Alignment explanation
Indices: 4699753--4699802 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
4699743 GTCTGATGTG
4699753 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
*
4699779 AGACTGGGAATGAACTCTGTATGC
1 AGACTGGGAATGAACTCCGTATGC
4699803 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:4701925 original size:905 final size:895
Alignment explanation
Indices: 4700076--4704126 Score: 5447
Period size: 901 Copynumber: 4.5 Consensus size: 895
4700066 TTGATGCGCA
*
4700076 AGACGTGATCCTTGTATTTCTT-TTGGCATGCACAAAAAAAATCAGCTAAAAACTCAAAGTGTAC
1 AGACGTGATCCTTGTATTT-TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
* * *
4700140 AAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGCCAGCAA
65 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
4700205 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA-AGGGG
130 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GGG
4700269 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
194 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* ** * *
4700334 CCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGCTGCCCCG
259 CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCG
* * * *
4700399 ACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGTATGTGCTGCCGCGACCCTCGGTCTA
324 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGA
** *
4700464 TCCTGAT-TTGAGACTGGGAATGAACTCTGTATGCTTAGACTATGAATGAACTCTGTATGCCCAA
389 TCC-GATCTT-AGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAA
* * * **
4700528 GTCAACCCACGAAACGAGCGTGTGGGTGCTCAGTAGGCCAGAGGGG-AGGGATGCGCAAGCCGGG
452 GTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCA-GGATGCGCAAGCCGGG
* * * * * ** *
4700592 GATCGATCGGGTCCCCTTCTGCGTGCAGCTGATCATGCTGCTACAACCCTCAGTACGGTCCTATC
516 GATCGACCGGGTCCCC-TCTGCGTGCTGCCGATCTTGCTACCGCAACCCTC-GT-CGGTCCGATC
* * * *
4700657 TTAGACTGGGAATCAACTCTGTATGACTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCGGGC
578 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* *
4700722 ACCACGCCGACCAAAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
643 ACTACGCCGACCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * *
4700787 CACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCT
708 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
4700852 TAAGCCTTCACGTGAAGTTTCATGGCAAGCCGACTCGTTTTCTATTTTTCACGATTTTCAAAACT
773 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACT
* * * *
4700917 GTTTACGGTTC-AGGATTTTTTAAAATTTTGTTGGAAGGAGATTTGCCCCCAAACTTGGT
838 TTTTACGGTTCGA-GATTTTTTAAAATTTT-TTGGAAGGAGTTTTGGCACCAAACTTGGT
* ** *
4700976 AGACGTGATCCCTGTATTAATGTTGGCATGCACAAAAAAATTCAGGTAAAAACTCAAAGTGTACA
1 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
*
4701041 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGCCTACTGGCAGCAAA
66 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAA
* *
4701106 CCTATAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
131 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
*
4701171 CCAATATAAGGTCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCC
196 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGGCCCCCC
* * * * * * ** *
4701236 CGATCACCAGAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGCCCCGACGATGGTGCCTTGG
260 CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGA
* *
4701301 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAGTTCGA
325 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GGTCGA
* * * *
4701366 TACGATCTTATACTGGGAATGAACTCCGTATGCTTAGAGTGGGAATGAACTCTGTATGCCTAAGT
389 TCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
* * * *
4701431 CAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCAGGATGTGCAAGCTGGGGAT
454 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
* ** * *
4701496 CAACCGGGTGCCCCTCAACGTGCTGCCGATCTTGCTGCCGCAACCCATGGTCTGGTCCGATCTTA
519 CGACCGGGT-CCCCTCTGCGTGCTGCCGATCTTGCTACCGCAACCC-TCGTC-GGTCCGATCTTA
* * *
4701561 GACTGGGAATGAACTTCGTATGCCTAACCCAACCGACGAAACGAGTGGACGGGCGGGCGGGCGAG
581 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---G-CGGGCGGGCGGGCGGG
* * * * * * *
4701626 CACTACGCCGACCAGAGAGACAGGATGCGCAAGCCATGGATCGAGAAGGTGGTTGGTAGGTTTAG
642 CACTACGCCGACCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
4701691 GCACATCTTCGTATTTCTGCATGCCAAT-CCAATTTTTATGGCTTGTAAATTCATACAATGGTCC
707 GCACATCTTCATATTTCTGCATGCCAATGCC-ATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
4701755 CTTAAGGCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
771 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
* * * * *
4701820 CTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGCTTTGGCATCAAACTCGGT
836 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCACCAAACTTGGT
* * * *
4701881 AGACATGATCCTTGCATTTTTGTTGGCATGCATC-AAACAATTCAGCTAAAAACTCAAACTGTAC
1 AGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
* * * * * *
4701945 ATGATTTAGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTGATGGCTATTGGCAGCAA
65 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
* * *
4702010 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCCAGGTTTGATGAGGGAGAGGGG
130 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
* * *
4702075 GCCAAAATAAGGGCCAAGTATCAGCACCCATCGCACATCATGTGTGCACA-CCCCCCGGCCCCCC
195 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
* * *
4702139 CGATCGCCGGAACCCCAATGGCGTCGGTCAGGTTCTCCGACGATGCTTCGGTGATGGTGCCCCGA
260 CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGA
* *
4702204 CGAAGAAAAATGTGGCACCAGCACCA-GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGCCTG
325 CGAAGAAAAATGCGGCACCAGCA-CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-G
* * *
4702268 GTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGAAATGAACTATGTATGCCTAAG
388 ATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAG
* * * *
4702333 TCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATACGCAAGCCAGGGA
453 TCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
* * * * * * * *
4702398 TCGGCCGGGTCCCCCTTTGCATGCTACAGATCTTGCTACCGTAGCCCTCTGTCCGATCCGATCTT
518 TCGACCGGGT-CCCCTCTGCGTGCTGCCGATCTTGCTACCGCAACCCTC-GT-CGGTCCGATCTT
* * ** * * *
4702463 AGACTAGGAAT-AACTCCGTATGCCTGAGTTAACCGATGAAACGAGCGCGCGGACGGTG-GGGCA
580 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG-GCGGGCA
* * *
4702526 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTATAGGC
644 CTACGCCGACCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
4702591 ACATCTTCATATTTTTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCCTC
709 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * * *
4702656 AAGCCTTCACATGAAGTTTCATGGCAAGACAACTCGTTCTCTATTTTTCATGATTTTCGAAACTT
774 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
* *
4702721 TTTACGGTTCGAGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCATCAAACTTGAT
839 TTTACGGTTCGAGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCACCAAACTTGGT
* * **
4702778 AGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTTAGCTAAAAACTTGAAGTGTACA
1 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
* * * * *
4702843 AGATTTTGTGATCATTTTAAAAAAGTGTCCCCATTTTAGATACTTTAATGACTACTGGCAGTAAA
66 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAA
* * *
4702908 CATGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
131 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
* * *
4702973 CCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCATGTGCGCACA-CTCCCCGG-CACCCC
196 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
* * ** * * ** *
4703036 GATCGTCGGAACCCTAATGCCACCGATCAGGTTCTCC-AGTGATGCTCCGATGATTATGCCCTGA
261 GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA-CGATGCTCCGATGATGGTGCCCCGA
* * * * *
4703100 TGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCTAGCATGTGCTGTCGCAACCCTCGGTCCGT
325 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CGA
4703165 TCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
389 TCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
* * * * * * *
4703230 CAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCAAAGGGGCGGGATGCACAAGTCGAGGAT
454 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
** * * * *
4703295 CGGTCGGGTCCTCCTCTGCGTGCTGCCGATCTTGCTACCGTAACCTTCAGTCCGACCTGATCTTA
519 CGACCGGGTCC-CCTCTGCGTGCTGCCGATCTTGCTACCGCAACCCTC-GTCGGTCC-GATCTTA
* ** * *
4703360 GACTGGGAATGAACTCCGAATGCCTAAGCCAAATGACAAAACGAGCGGGCGGGTAGGTGGCCGGG
581 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG--CG-GG-CGGG
* * * *
4703425 CACTACGTCGACCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTACGTGCGTTTGG
642 CACTACGCCGACCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * **
4703490 GTACATCTTCATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATTCTCCC
707 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
4703555 TTAAGCCTTCACGTGAAGTTTCAAT-GCAAGATGACTCGTTTTTTATTTTTCATGATTTTCAAAA
772 TTAAGCCTTCACGTGAAGTTTC-ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
* * * ** ** * *
4703619 CTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCAAAAAAATTTTTGGCCCCAAACTTGGT
836 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCACCAAACTTGGT
* * * *
4703680 AGACGTCATCCTTGTATTTTTGTTGGCATGCACCAAAAAATTCAGCGAAAAACTCGAAGTGTACA
1 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
* *
4703745 AGATTTTGTGACCATTAGAAAAAAGTGTCCCCATTTCT-GGCACTTTAATGGCTACTGGCAGCAA
66 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT-TAGACACTTTAATGGCTACTGGCAGCAA
4703809 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-AGAGGTTTGATGAGGGATAGGG
130 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA-AGGTTTGATGAGGGATAGGG
*
4703873 GGCCAAAATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
194 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* * * * *
4703938 TCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGGCGATGCTCCGGTGATGGTGCCCCG
259 CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCG
** * * * * * *
4704003 GTGAACAAAAATACGGCACCAGCACATGCCCAAGCCAAGCAGGTGCTGCCGCAACCCTTGGTCTG
324 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-G
* * * *
4704068 GTCCGATCTTAGACTGGGAATGAACTC-CTATGCTTAGATTGGGAATGAACTCCGTATGC
388 ATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGC
4704127 GGGCCAAGTA
Statistics
Matches: 2761, Mismatches: 347, Indels: 83
0.87 0.11 0.03
Matches are distributed among these distances:
895 8 0.00
896 284 0.10
897 278 0.10
898 216 0.08
899 6 0.00
900 236 0.09
901 512 0.19
902 288 0.10
903 327 0.12
904 148 0.05
905 456 0.17
906 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (895 bp):
AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGAC
GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGATC
CGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCA
ACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCG
ACCGGGTCCCCTCTGCGTGCTGCCGATCTTGCTACCGCAACCCTCGTCGGTCCGATCTTAGACTG
GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCC
GACCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGG
TTCGAGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCACCAAACTTGGT
Found at i:4702315 original size:26 final size:26
Alignment explanation
Indices: 4702275--4702327 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4702265 CTGGTCCGAT
* *
4702275 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTATGTATG
4702301 CTTAGACTGGAAATGAACTATGTATG
1 CTTAGACTGGAAATGAACTATGTATG
4702327 C
1 C
4702328 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTATGTATG
Found at i:4703207 original size:26 final size:26
Alignment explanation
Indices: 4703171--4703223 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4703161 CCGTTCCGAT
4703171 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
4703197 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
4703223 C
1 C
4703224 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:4704110 original size:25 final size:26
Alignment explanation
Indices: 4704075--4704126 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
4704065 CTGGTCCGAT
4704075 CTTAGACTGGGAATGAACTCC-TATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4704100 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4704126 C
1 C
4704127 GGGCCAAGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4704315 original size:242 final size:244
Alignment explanation
Indices: 4703884--4704343 Score: 640
Period size: 242 Copynumber: 1.9 Consensus size: 244
4703874 GCCAAAATAA
* * *
4703884 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCTCGATCGTCGG
1 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCACTAGATCATCGG
* * * ** *
4703949 AACCCCAATGCCGTCGGTCAGGTTCTTCGGCGATGCTCCGGTGATGGTGCCCCGGTGAACAAAAA
66 AACCACAACGCCGGCGGTCAGGTTCTTCGGCGATGCTCCGACGATGGTACCCCGGTGAACAAAAA
* * *
4704014 TACGGCACCAGCACATGCCCAAGCCAAGCAGGTGCTGCCGCAACCCTTGGTCTGGTCCGATCTTA
131 TACGGCACCAGCACATGCCCAAGCCAAGCAGGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTA
*
4704079 GACTGGGAATGAACTCC-TATGCTTAGATTGGGAATGAACTCCGTATGC
196 GACTCGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGC
*
4704127 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACA-CCCCCCGGCCCAC-AGATCATCGG
1 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCACTAGATCATCGG
* ** ** *
4704190 AACCACGACGCCGGCGGTCAGGTTCTCTTTGCGATGCTCCGACGATGGTACCTTGGTGAAGAAAA
66 AACCACAACGCCGGCGGTCAGGTTCT-TCGGCGATGCTCCGACGATGGTACCCCGGTGAACAAAA
* ** * * *
4704255 ATATGGTGCCAGCACATGCGCGAGCCCAA-CATGTGCTACCGCAACCCTCGGTCCGGTCCGATCT
130 ATACGGCACCAGCACATGCCCAAG-CCAAGCAGGTGCTACCGCAACCCTCGGTCCGGTCCGATCT
4704319 TAGACTCGGAATGAACTCCGTATGC
194 TAGACTCGGAATGAACTCCGTATGC
4704344 CTAAGTCAAC
Statistics
Matches: 188, Mismatches: 26, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
241 30 0.16
242 110 0.59
243 48 0.26
ACGTcount: A:0.22, C:0.33, G:0.26, T:0.19
Consensus pattern (244 bp):
GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCACTAGATCATCGG
AACCACAACGCCGGCGGTCAGGTTCTTCGGCGATGCTCCGACGATGGTACCCCGGTGAACAAAAA
TACGGCACCAGCACATGCCCAAGCCAAGCAGGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTA
GACTCGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGC
Found at i:4705218 original size:26 final size:26
Alignment explanation
Indices: 4705182--4705235 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
4705172 GGTCTGATCT
*
4705182 TAGACTGGGAATGAACTCCATTTGCC
1 TAGACTGGGAATGAACTCCATATGCC
*
4705208 TAGACTGGGAATGAACTTCATATGCC
1 TAGACTGGGAATGAACTCCATATGCC
4705234 TA
1 TA
4705236 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCC
Found at i:4706103 original size:26 final size:26
Alignment explanation
Indices: 4706067--4706119 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4706057 CTGGTCTGAT
4706067 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4706093 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
4706119 C
1 C
4706120 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4706995 original size:26 final size:26
Alignment explanation
Indices: 4706959--4707011 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4706949 CTGGTCCGAT
4706959 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4706985 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
4707011 C
1 C
4707012 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4707361 original size:891 final size:886
Alignment explanation
Indices: 4704317--4708923 Score: 5855
Period size: 887 Copynumber: 5.2 Consensus size: 886
4704307 CCGGTCCGAT
* * * * *
4704317 CTTAGACTCGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGTGTGTGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
* * ** ** * * * **
4704382 CGGCCAGAGGAGCGAGACACACAA-TCGGGGATCGACCGGGTCCTCCTCTGCATGCTACCAATCC
66 CGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTACC-ATCC
* * * * * * *
4704446 TGCTGCTGCAACTCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
130 TACTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
4704511 CCAATGAAACGATC-GGACGGGCGGGCGGGCAGGCACTACGCTGGCTAGAGAGACGGGATGCGCA
195 CCGATGAAA-GA-CAAG-CGGGC-GGAGGGCAGGCACTACGC-GGCCAGAGAGGCGGGATGCGCA
* * *
4704575 AGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTGTGTGCCAATGCC
255 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCC
4704640 ATTTTTATGGCTTGTAAATTCATACAATGGT-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
320 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
4704704 CGACTCGTTTTCTATTTTTCACAAGTTTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTT
385 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * * * * *
4704769 TTGAATGAAGTTTTGGCCCCAACTTGGTAGATGTGATCCTTTTATTTTTTTTGGTATGCACAAAA
450 TCGAAAGGAGTTTTGGCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* *
4704834 AAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTAGAAAAAAGTGTCCCCATTTC
515 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
***
4704899 AGACACTTTAATGGGTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
580 AGACACTTTAATAACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
4704964 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
645 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * ** * * *
4705029 CATGTGCGCACACCCCCCCGG-GCCCCCGATCGCCGGAACCCCAATGCCGCTGGTAAGGCTCTTC
710 CATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCAGTCAGGTTCTCC
** ** * * * ** * *
4705093 GGCAATGGTGCCCCGACGAGGAAAAAAGCAATGTCCA-CACATGCCTG-GTTCCAGCATGTGCTA
774 GGTGATGGTGCCCCGGTGAAGAAAAATGCGA-CACCAGCACATGCCTGAG-CCCAGCATGTGCTG
* *
4705156 CCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATTTG
837 CCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATG
* * * *
4705206 CCTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
* * * * * ** * * * **
4705271 TGGCTAGAGAGGCGGAATGTGTAAGCTAGGGATCAATCGGGTCTCCCTCTGCGTGCTATGGATCC
66 CGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTA-CCATCC
* ** * * * *
4705336 TGCT-GTGACAACCCTCGGTCTGGTTCGATCTTAGAGTGGGAATGAACTTCGTATGCCTAAGCCA
130 TACTACCG-CAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** ** *
4705400 ACCGATG-AA-ACAAGCGGGCGGACGGGCGGGCACTACGCCTACCAGAGAGATGGGATGCGCATG
194 ACCGATGAAAGACAAGCGGGCGGA-GGGCAGGCACTACG-CGGCCAGAGAGGCGGGATGCGCAAG
* **
4705463 CCGAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
257 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCAT
* * *
4705528 TTTTATGGGTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACG
322 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * *
4705593 ACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGATTCGAGATTTTTTAAAATTTTTT-
387 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
*
4705657 GAAAGGAGTTTTGGCCCCAAACGTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
452 GAAAGGAGTTTTGG-CCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
* * * * * *
4705722 AATTCAGCTAAAAACTTGATGTGTACAGGATTTTGTGACCATTCGAAAAAAGTGCCCCCATTCCA
516 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
4705787 GACACTTTAATAACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
581 GACACTTTAATAACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * *
4705852 TCTCAAGGTTTGATGAGGGATAGAGGGCCAATATGAGGGCCAAGTACCAGCACCCATCGCATATC
646 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * *
4705917 ATGTACGTACACCCCCCGGCCCCCTCGATCATCGGAACCCCAATATCGCCAGTCAGGTTCTCCGA
711 ATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCAGTCAGGTTCTCCGG
*
4705982 TGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGC
776 TGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGC
*
4706047 AACCTTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATG
841 AACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATG
*
4706093 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
* * * *
4706158 CGGCCAGAGGGGAGGGATGCGTAAGTCGGGGATCGGTCGAGTCCCCCTCTGTGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTACC-ATCC
* * * **
4706223 TACTACCGCAACCTTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGGTAA
130 TACTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
4706288 CCGATGAAAGGAGCAAGCGGGCGGGAGGGCAGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAA
195 CCGATGAAA-GA-CAAGCGGGC-GGAGGGCAGGCACTACG-CGGCCAGAGAGGCGGGATGCGCAA
* *
4706353 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTATGTGCCAGTGCCA
256 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
** * *
4706418 ACTTTATGGCATGTGAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
321 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
4706483 GACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCAGAATTTTTTAAAATTTTTT
386 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *** *
4706548 CAAAAGGAGTTTTGGAGCCAAACATGGTATACGTGATTGATGTATTTTTTTTTGGCTTGCACAAA
451 CGAAAGGAGTTTTGG-CCCAAACATGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAA
*
4706613 AAAATTCAGGTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA-TGTCCCCATTT
514 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
4706677 CAGACACTTTAATAACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
579 CAGACACTTTAATAACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * *
4706742 GTTCTCAAGGTTTGATGAGGTATAGAGGGCCAATATGAGGGCCAAGTACCAGCACCCATCGCATA
644 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*
4706807 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCAATCAGGTTCTCC
709 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCAGTCAGGTTCTCC
* *
4706872 GGTAATAGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCC
774 GGTGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCC
* *
4706937 GCAACCTTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATG
839 GCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATG
* *
4706985 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
* *
4707050 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCATCCT
66 CGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTACCATCCT
* *
4707115 ACTACCGCAACCTTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAAC
131 ACTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* *
4707180 CGATGAAAGGAGCAAGCGGGCGAGAGGGCAGGCACTATGTCGGCTAGAGAGGCGGGATGCGCAAG
196 CGATGAAA-GA-CAAGCGGGCG-GAGGGCAGGCACTACG-CGGCCAGAGAGGCGGGATGCGCAAG
* *
4707245 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTATGTGCCAATGCCAA
257 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCAT
* *
4707310 CTTTATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
322 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
4707375 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGA-TTTTTAAAATTTTTTC
387 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * * **
4707439 AAAAGGAGTTTTGGAGCCAAACATGGTATACGTGATCGATGTATTTTTTTTTGGCATGCACAAAA
452 GAAAGGAGTTTTGG-CCCAAACATGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAA
4707504 AAATTCAAG-TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA-TGTCCCCATTT
515 AAATTC-AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
4707567 CAGACACTTTAATAACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTCAA-GGGGTGTGA
579 CAGACACTTTAATAACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * **
4707631 GTTCGCGAGGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAAGTACTTGCACCCATCGCACA
644 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
4707696 TCCTGTGCGCACACCCCTC-GACCCCCCGATCGTTGGAACCCCAATGTCGTCAGTCAGGTTCTCC
709 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCAGTCAGGTTCTCC
* * * * * *
4707760 AGCGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGGGCCCAGCATGTGCTGCC
774 GGTGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCC
* *
4707825 ACAA-CC-C--TC--G---G-TC-----C-------G-A-TCC-GAT-
839 GCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATG
* * * * *
4707847 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
** * * * * * *
4707912 CGGCCAGATAGGCAGGATGCGTAAGCTGGGGATCGGTTGGGT-CCCC-C--TATG----CATGCT
66 CGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTACCATCCT
* * *
4707969 A-T--CGCAACCCT-AGGTCTAGTCCGATCTTAGACTGGGAATCAACTCTGTATGCCTAAGCCAA
131 ACTACCGCAACCCTCA-GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * * *
4708030 CCAACG-AA-ACTAGCGGGC---GGGCGGGCTCTACGCTAGCCAGAGAGGCGAGATGTGCGAGCC
195 CCGATGAAAGACAAGCGGGCGGAGGGCAGGCACTACGC-GGCCAGAGAGGCGGGATGCGCAAGCC
* * * * **
4708090 GTGTATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCAAATTTGTACATGCCAAT-CTCATT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGC-CATT
*
4708154 TTTATGGCTTGTAAATTCATA-AATGGTCCCTTAAGCCTTCACGTGTAGTTTCATGGCAAGACGA
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * **
4708218 CTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAATTCGGGATTTTTTAAAATTTTTTCG
388 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * * * * *
4708283 GAAGGCGTTTTGGCCCAAAACTTGGTAGACGTCATCCTTGTATTTTTGTTGGCATGCATAAAACA
453 AAAGGAGTTTTGGCCC-AAACATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
*
4708348 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
517 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
** * *
4708413 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATGTCAAATGCTCTTTAACGGGGTGTGAGTT
582 ACACTTTAATAACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
4708478 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCACCACCCATCACACATCA
647 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
** * ** *
4708543 TGTGCGCACACCCCCC-ATCCCCCCGATCGCCGGAACCCCAATACCGTCAGTCAGGTTCTTCGAC
712 TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCAGTCAGGTTC-TC--C
* ** * *
4708607 GATGCTCTGGCGATAGTGCCCCAATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
774 G--G---T---GATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCAT
* **
4708672 GTGCTGCTGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
831 GTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATG
* * * * *
4708728 CTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGGGCGTACGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
* * * * *
4708793 CGGCCAGAGGGGCAGGATGCGTAAGCCGGGGATCGATCGGGTCTCCTTCTGTGTGCTATCAATCT
66 CGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTA-CCATCC
* * * * *
4708858 TGCTACCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGACTAAGCCAA
130 TACTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
4708923 C
195 C
4708924 TGACGAAATG
Statistics
Matches: 3273, Mismatches: 365, Indels: 156
0.86 0.10 0.04
Matches are distributed among these distances:
841 2 0.00
842 153 0.05
843 214 0.07
844 121 0.04
845 2 0.00
847 9 0.00
848 1 0.00
849 1 0.00
850 3 0.00
851 56 0.02
853 1 0.00
854 6 0.00
855 59 0.02
856 2 0.00
857 1 0.00
858 3 0.00
859 2 0.00
860 1 0.00
861 5 0.00
862 94 0.03
863 2 0.00
864 4 0.00
865 3 0.00
866 1 0.00
870 1 0.00
873 1 0.00
877 1 0.00
878 3 0.00
879 3 0.00
880 2 0.00
881 94 0.03
882 3 0.00
883 1 0.00
884 2 0.00
885 5 0.00
886 150 0.05
887 616 0.19
888 105 0.03
889 155 0.05
890 285 0.09
891 518 0.16
892 463 0.14
893 119 0.04
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (886 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
CGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTACCATCCT
ACTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGATGAAAGACAAGCGGGCGGAGGGCAGGCACTACGCGGCCAGAGAGGCGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAA
GGAGTTTTGGCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATAACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCAGTCAGGTTCTCCGGTGATG
GTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCC
TCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATG
Found at i:4708731 original size:26 final size:26
Alignment explanation
Indices: 4708702--4708754 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4708692 CTGGTCTGAT
*
4708702 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4708728 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4708754 C
1 C
4708755 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4710866 original size:26 final size:26
Alignment explanation
Indices: 4710827--4710879 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4710817 CTAATTCGAT
* *
4710827 CTTAGACTGGGAATGGACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
4710853 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
4710879 C
1 C
4710880 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:4716604 original size:901 final size:898
Alignment explanation
Indices: 4714792--4716627 Score: 2815
Period size: 901 Copynumber: 2.0 Consensus size: 898
4714782 AAATGCGGCA
*
4714792 CCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTAGACTAGGAATGAACTCCGTACGCCTA
1 CCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTAGACTAGGAATGAACTCCATACGCCTA
*
4714857 AGTCAACCCACGAAACGAGCATACGGGCGCTCAGCCGACCAGAGGGGCGGGATGCACAACCCGGG
66 AGTCAACCCACGAAACGAGCATACGGGCGCTCAACCGACCAGAGGGGCGGGATGCACAACCCGGG
* * * ** *
4714922 GATTGGCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGGTGCCGCAACCCTCGGTCTGATCTGATC
131 GATCGGCTGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCAATCTGATCTAATC
* * * *
4714987 TTAGACTGGGAATGAACTCCGTATACCTACGCCAACTGATGCAACAAGCGAGCGGGCGGGCGGGC
196 TTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACAAGCGAGCGGGCGGGCGGGC
* * * * *
4715052 ACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGGCAGGTGGGTTTGTG
261 ACTACGCCAGCCAGAGAGACGGGATCCGCAAGCCATGGATCGATAGGGCGGCAGGTGGGTTTGTC
*
4715117 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
326 CACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * * **
4715182 TAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCTTTTTCTATATTTCACGATTTTTGAAACT
391 TAAGCCTTCACATGAAGTGTCATGGCAAGACGACTCGTTTTCTATATTTCACGATTTTCAAAACT
*
4715247 TTTTACGGTTCTGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
456 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * *
4715312 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAAGTGTGCATGATTT
521 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAAATGTACAAGATTT
* *
4715377 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTATA
586 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTATA
* * *
4715442 AAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGGTAGGGGGCCAATA
651 AAATCTCAAACGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
*
4715507 TAAGGGCCAGGCACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCC
716 TAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCC
* * *
4715572 AGAACCCTAATGTCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGCTGCCCCGACGAAGAAA
781 AGAACCCCAATCTCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGCTGCCCCGACGAAGAAA
** ** *
4715637 AATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGT
846 AATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGT
* *
4715690 CCAATCTGATCTTAGACTGGGAATGAACTCTGTATGCTAGACTAGGAATGAACTCCATACGCCTA
1 CCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTAGACTAGGAATGAACTCCATACGCCTA
* * * * * * *
4715755 AGTCAACCCATGAAATGAGCGTGCGGGCGCTCAACCGACCAGAGTGGCGGGATGCGCAAGCCGGG
66 AGTCAACCCACGAAACGAGCATACGGGCGCTCAACCGACCAGAGGGGCGGGATGCACAACCCGGG
* * * *
4715820 GATCGG-TCGGGTCCCCCTTTGCGTGCTGCCAATCTTGCTGCCGTAACCTTCAATCT-AGTCTAA
131 GATCGGCT-GGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCAATCTGA-TCTAA
* * * *
4715883 TCTTAGACTGGGAATGAACTTTC-TATGCCTAAGCCAACCGACGAAACGAGCGGGTGGACGGGCG
194 TCTTAGACTGGGAATGAAC-TCCGTATACCTAAGCCAACCGACGAAACAAGC--G-AG-CGGGCG
* *
4715947 GGCGGGCACTACGCCAGCCAGAGAGACGGGATCCGCAAGCCATGGATCGATAGGGTGGTAGGTGG
254 GGCGGGCACTACGCCAGCCAGAGAGACGGGATCCGCAAGCCATGGATCGATAGGGCGGCAGGTGG
* *
4716012 GTTTAG-CCACATCTTCATATTTCTACGTGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAA
319 GTTT-GTCCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
4716076 TGGTCCCTTAAGCCTTCACATGAAGTGTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
383 TGGTCCCTTAAGCCTTCACATGAAGTGTCATGGCAAGACGACTCGTTTTCTATATTTCACGATTT
4716141 TCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCC-AACTTG
448 TCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTG
* * **
4716205 GTAGACGTGATCCTTGTGTTTTTGTTGGCATGCGCAAAAAAATTTTGCTAAAAACTCA-AAATGT
513 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT-AGAAATGT
* *
4716269 ACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGATACTTTAATGGCTACTAGCAGC
577 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGC
* *
4716334 AAACCTGTAAAA-CTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
642 AAACCTATAAAATCTCAAACGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
4716398 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCC
707 GGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCC
** * *
4716463 CCCGATCGCGGGAACCCCAATACT-GCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCC
771 CCCGATCGCCAGAACCCCAAT-CTCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGCTGCCC
4716527 CGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGT
835 CGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGT
*
4716591 CCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
1 CCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGC
4716628 CTAAGCCAAC
Statistics
Matches: 847, Mismatches: 80, Indels: 19
0.90 0.08 0.02
Matches are distributed among these distances:
897 2 0.00
898 209 0.25
899 2 0.00
900 105 0.12
901 288 0.34
902 240 0.28
903 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (898 bp):
CCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTAGACTAGGAATGAACTCCATACGCCTA
AGTCAACCCACGAAACGAGCATACGGGCGCTCAACCGACCAGAGGGGCGGGATGCACAACCCGGG
GATCGGCTGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCAATCTGATCTAATC
TTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACAAGCGAGCGGGCGGGCGGGC
ACTACGCCAGCCAGAGAGACGGGATCCGCAAGCCATGGATCGATAGGGCGGCAGGTGGGTTTGTC
CACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACATGAAGTGTCATGGCAAGACGACTCGTTTTCTATATTTCACGATTTTCAAAACT
TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAAATGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTATA
AAATCTCAAACGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCC
AGAACCCCAATCTCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGCTGCCCCGACGAAGAAA
AATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGT
Found at i:4717306 original size:713 final size:715
Alignment explanation
Indices: 4715876--4717340 Score: 2345
Period size: 713 Copynumber: 2.0 Consensus size: 715
4715866 CCTTCAATCT
* *
4715876 AGTCTAATCTTAGACTGGGAATGAACTTTC-TATGCCTAAGCCAACCGACGAAACGAGCGGGTGG
1 AGTCCAATCTTAGACTGGGAATGAAC-TTCGTATGCCTAAGCCAACCGACGAAAC-A-CGAGTGG
*
4715940 ACGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATCCGCAAGCCATGGATCGATAGGGTGG
63 ACGGGCGGGCGGGCACTACGCCAGCCAGAGAAACGGGATCCGCAAGCCATGGATCGATAGGGTGG
* * *
4716005 TAGGTGGGTTTAGCCACATCTTCATATTTCTACGTGCCAATGCCATTTTTGTGGCTTGTAAATTC
128 CAGGTGGGTTTAGCCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
4716070 ATACAATGGTCCCTTAAGCCTTCACATGAAGTGTCATGGCAAGACGACTCGTTTTCTATTTTTCA
193 ATACAATGGTCCCTTAAGCCTTCACATGAAGTGTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* **
4716135 CGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCA
258 CGATTTTCAAAACTTTTTACGGGTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCA
* * * * ** *
4716200 ACTTGGTAGACGTGATCCTTGTGTTTTTGTTGGCATGCGCAAAAAAATTTTGCTAAAAACTCAAA
323 AATTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCAAA
* *
4716265 ATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGATACTTTAATGGCTACTAG
388 ATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAG
*
4716330 CAGCAAACCTGTAAAACTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
453 CAGCAAACCTGTAAAACTCAAATGCTCTTCAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
4716395 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGC
518 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
* ** *
4716460 CCCCCCGATCGCGGGAACCCCAATACTGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGC
583 CCCCCCGATCGCGGGAACCCCAATACCGCCGGTCAGGTTCTCCGGCAATGCTCCGACGATGGTGC
4716525 CCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGG
648 CCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGG
4716590 TCC
713 TCC
* *
4716593 AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-A-GAGTAGG-C
1 AGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACACGAGT-GGAC
* * * *
4716655 GGGCGGGCGGGCACTATGCCAGTCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGCA
65 GGGCGGGCGGGCACTACGCCAGCCAGAGAAACGGGATCCGCAAGCCATGGATCGATAGGGTGGCA
*
4716720 GGTGGGTTTAGGCACATCTTCATATTTC-AGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
130 GGTGGGTTTAGCCACATCTTCATATTTCTA-CATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
4716784 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCAC
194 TACAATGGTCCCTTAAGCCTTCACATGAAGTGTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
**
4716849 GATTTTTGAAACTTTTTACGGGTCAAGATTTTTTAAAATTTTTTC-AGAAGGAGTTTTGGCCCCA
259 GATTTTCAAAACTTTTTACGGGTCAAGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCC-
*
4716913 AAATTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TCAGCAAAAAACTCGA
322 AAATTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCAA
* *
4716977 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
387 AATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTA
*
4717042 GCAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
452 GCAGCAAACCTGTAAAA-CTCAAATGCTCTTCAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
4717107 ATAGGGGGCCAATATAAGGGCCAAGTCCCAGCACCCATCGCACATCATGTGCGTACACCCCCCCG
516 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG
4717172 G-CCCCCCGATCGTC-GGAACCCCAATACCGCCGGTCAGGTTCTCCGGCAATGCTCCGACGATGG
581 GCCCCCCCGATCG-CGGGAACCCCAATACCGCCGGTCAGGTTCTCCGGCAATGCTCCGACGATGG
** * * ***
4717235 TGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCTGAGCTCAGCATGTGCTACCGTGACCCT
645 TGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCT
4717300 CGGTCC
710 CGGTCC
4717306 AGTCCAATCTTAGACTGGGAATGAACTTCGTATGC
1 AGTCCAATCTTAGACTGGGAATGAACTTCGTATGC
4717341 TTAGACTGGG
Statistics
Matches: 690, Mismatches: 51, Indels: 18
0.91 0.07 0.02
Matches are distributed among these distances:
712 2 0.00
713 483 0.70
714 155 0.22
715 1 0.00
716 2 0.00
717 47 0.07
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (715 bp):
AGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACACGAGTGGACG
GGCGGGCGGGCACTACGCCAGCCAGAGAAACGGGATCCGCAAGCCATGGATCGATAGGGTGGCAG
GTGGGTTTAGCCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACATGAAGTGTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
TTTTCAAAACTTTTTACGGGTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAT
TGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCAAAATG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAG
CAAACCTGTAAAACTCAAATGCTCTTCAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
CCCGATCGCGGGAACCCCAATACCGCCGGTCAGGTTCTCCGGCAATGCTCCGACGATGGTGCCCC
GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTCC
Found at i:4717350 original size:26 final size:26
Alignment explanation
Indices: 4717314--4717366 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4717304 CCAGTCCAAT
*
4717314 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4717340 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4717366 C
1 C
4717367 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4718759 original size:885 final size:887
Alignment explanation
Indices: 4716594--4723358 Score: 8311
Period size: 896 Copynumber: 7.6 Consensus size: 887
4716584 CCTCGGTCCA
* * **
4716594 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGTAGGC-GGG
1 GTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGG
* * * * *
4716658 CGGGCGGGCACTATGCCAGTCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGCAGGT
66 CGAGCGGGCACTACG-CGGCCAGAG--ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
4716723 GGGTTTAGGCACATCTTCATATTTC-AGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
128 GGGTTTAGGCACATCTTCATATTTCTA-CATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
4716787 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGAT
192 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * *
4716852 TTTTGAAACTTTTTACGGGTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAAT
257 TTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* *
4716917 TGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TCAGCAAAAAACTCGAAGTG
322 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
4716981 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
387 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
4717046 CAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
452 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
4717111 GGGGCCAATATAAGGGCCAAGTCCCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGGCCC
517 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CA----CAC--CCC
* *
4717176 CCCGATCGTCGGAACCCCAATACCGCCGGTCAGGTTCTCCGGCAATGCTCCGACGATGGTGCCCC
574 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC
* * * **
4717241 GACGAAGAAAAATGTGGCACCAGCACATGCCTGAGCTCAGCATGTGCTACCGTGACCCTCGGTCC
639 GACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* *
4717306 AGTCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
704 A-TCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
4717371 GTCAACACACGAAACGAGTGTACGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGG
768 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* ** * * * * *
4717436 ATTGGCCGGGTCCCCCTCTACATGCTACCGATCCTGCTGCCACAACCCTCGATCCG
833 ATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCTTC-ATCCG
* * *
4717492 GTTCGATCTTAGACTAGGAATGAACACCGTATGCCTAAGCCAACCGAC-AAA--A-CGAGC---G
1 GTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGG
*
4717550 -G-GCGGGCACTACGCCGGCCAGAGGGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGT
66 CGAGCGGGCACTACG-CGGCCAGA--GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
4717613 GGGTTTATGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAGTCATACA
128 GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * **
4717678 ATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGGAAGACGACTCGTTTTCTATTTTTCATAATT
193 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
** * * *
4717743 TTCAAAACTTTTTACGGTTCGGGA-TTTTTAAAATTTTTTTGGAAGGAGTTTTGGTCCCAAACTT
258 TTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
*
4717807 GGTAGACGTGATCCTT-TCATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTG
323 GGTAGACGTGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
4717871 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTCTAATGGCTACTGGCAG
387 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
4717936 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGCTTGATGAGGGATAG
452 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * *
4718001 GGGGCCAATATAAGGGCTACGTACCAGCACCCATCTCACATCACGTGCGCACACCCCCCCGATCG
517 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGATCG
*
4718066 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGTCGATGCTCCGACGATGGTGCCCCGACGAAGA
582 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGA
* *
4718131 AAAATGTGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGAT
647 AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC-ATCCAAT
* *
4718196 CTTAGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCC
711 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * *
4718261 ACGAAATGAGCGTGCGGGCGCTCAACCATCTAGAGGGGCAGGATGCGTAAGCCGAGGATCGATCG
776 ACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * *
4718326 GGTCCCCTTCTGTGTGCTGCCGATCCTGCTGCCGCAACCTTGATCCG
841 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCTTCATCCG
* *
4718373 GTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGGCAACCGACGAAACGAGTGGGC-GGG
1 GTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGG
* * * *
4718437 CGAGCGGGCACTAC-CGACCAGAGACAGGATGCGTAAGCCGTGGATTGATAGGGTGGTAGGTGGG
66 CGAGCGGGCACTACGCGGCCAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
4718501 TTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
131 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
4718566 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
196 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
4718631 GAAACTTTTTTCGGTTCGAGATTTTTCAAAATTTTTTGGGAAGGATTTTTGGCCCCAAACTTGGT
261 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
*
4718696 AGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
326 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
4718760 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGACTACTGGCAGCAAT
391 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
4718825 CCTGTAAAATCTCAAATGCTCTGTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
456 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * * * * *
4718890 CCAATATAAGGGCCAAGTACCAGTACCCATCACACATTACGCAAGCACAACCCCCGGCCCCCCCG
521 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG--TGCGC-A----C-ACCCCCCCG
* * * * * * *
4718955 ATCGCCAGAACCCCAATGCCACCGGTCAGGTTCTCTGGCGATGCTCC-AGCAATGATGCCCCGAT
578 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGA-CGATGGTGCCCCGAC
*** * *
4719019 GAAG-AAAATGCAACACCAGCACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTTGGT-CAGT
642 GAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCA--
* **
4719082 TCCAATCTTAGATTGGGAATGAACTCTGTATGCTTAGACT-GGAAGTGAACTCCGTATGCCTAAG
705 TCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAA-TGAACTCCGTATGCCTAAG
* * * * *
4719146 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGTGGGATGCACAAACCGGGGA
769 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * *
4719211 TCTATCGGGTCCCCCTCTGCGTGTTGCCGATCCTGCTGTCGTAA-CTGTCAGTCTG
834 TCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCT-TCA-TCCG
* *
4719266 GTCTGATCTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGA
1 GTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--G-
*
4719331 GGGCGGGCGGGCACTACGTCGGCCAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
63 GGGCGAGCGGGCACTACG-CGGCCAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * **
4719396 TGGGTTTACGTACATCTTCATATTT-TGCATGCCAATGCCATTTTTATCTCTTGTAAATTCATAC
127 TGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
4719460 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
192 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * * *
4719525 CTTCGAAACTTTTTACGGTTCCAGATTTTTTTAAATTTTTTCAGAAGGATTTTTGGCCCCAAACT
257 TTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* *
4719590 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTGGAAGTG
322 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
4719655 TACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
387 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
4719720 CAAACCTGTAAAATCTCGAATGCTCTTTAAAGGGGTGTGAGTTCGT-GAGGTTTGATGAGGGATA
452 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGGTTTGATGAGGGATA
*
4719784 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGACCA
516 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-----C--CC-
* * * * * *
4719849 CCCCGATCTTTGGAACCCCTATGCCGCCGGTTAGGTTCTTCGGCGATGCTCCGACGATGGAGCCC
573 CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCC
* * * *
4719914 CGGCGAAGAAAAGTGCGGCACCAGCACATGCCCTAGCCCAGCATGTGCTGCCGCAACCCTCGGT-
638 CGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
** * *
4719978 C-T--GGTC-----C---G-AT---CT---GAT-CTTAGACTGGGAATGAACTCCGTATGTCTAA
703 CATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
4720024 GTCAACCCACAAAACGAGCATGCGGACGCTCAGCC-GACCAGAGGGGTGGGATGCGCAAGTCGGG
768 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAG-CCAGAGGGGCGGGATGCGCAAGCCGGG
* * ** * * * *
4720088 GATCGACCGGGTCCCCCTCTGCGTGTTATCGATCTTGCTGCCACAACCCTCGATCTG
832 GATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCTTC-ATCCG
* * * * * ** *
4720145 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCCCAAGCCAACCCATAAAACGGGCGGGCGGGG
1 GTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGG
* * * *
4720210 GTGGGCGGGCACTACGCCAGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
65 GCGAGCGGGCACTACG-CGGCC--AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
** * **
4720275 TGGGTTTAATCACATCTTGATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
127 TGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
4720340 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACAAT
192 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** * * * *
4720405 TTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTGGGAAAGAGTTTTGGCCCCAAACT
257 TTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* *
4720470 TGGTAGACGTGATCCTTGTCTTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAA-TCGAAGTG
322 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
4720534 TACAAGATTTTGTGACGATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAG
387 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * * *
4720599 CAAAACTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAA
452 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
4720664 AGGGCCAATATAAGGGCCAAGTATC-GACACCCATCGCACATCATGTGCGCAGACCCCCCCGATC
517 GGGGCCAATATAAGGGCCAAGTACCAG-CACCCATCGCACATCATGTGCGCACACCCCCCCGATC
* * * * **
4720728 ATTGGAACCCCAATGCCGCCGGTCAAGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGGTGAAG
581 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAG
* *** *
4720793 AAAAATGTGGCACCATCACATGGATGAGCCCAGCAT-T--T--C-CTA--C-C-G--CAT-C--T
646 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCATCCAAT
** * *
4720843 C-T---C--GGTCTG-A-TCCA-AT-CTTAAACTGGGAATGAACTCTGTATGCCTAAGTCAACCC
711 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * ** *
4720898 ACGAAATGAGTGTACGGGCGCTCAACCGGCTAGAGGGGCGGGATGCTTAAGTCGGGGATC-AGTC
776 ACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-TC
* * * * ** * *
4720962 GGGTCCCCCTCTGTGTACTACCAATATTGCTGCCACAACCCTCAATCCG
840 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCTTC-ATCCG
* * * * * *
4721011 ATCTGATCTTAGA-TTGAGAATGAACTCCGTATGCCTAAGACAACTGACAAAACGAGCGGGCAGG
1 GTCCGATCTTAGACTAG-GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG
* * *
4721075 GTG-GCAGGTGGGCACTACGTCGGCCAGAGAGATGGGTTGCGCAAGCCGTGGATCGATAGGGTGG
64 G-GCG-A-GCGGGCACTACG-CGGCC--AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
*
4721139 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
123 TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
4721204 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAATCGTTTTCTATTTTTCA
188 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
*** * * *
4721269 CGATTTTTGAAACTTTTTGTTGTTCCAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGACCCA
253 CGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* * *
4721334 AACTTGGTAGACGAGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTGGA
318 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * * *
4721399 AGTGTACAAGATTTTGTGATCATTTGAGAAAAGTGTCCCTATTTCTGACACTTTAATGGCTACTG
383 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
4721464 GCAGCAAACCTGTAAAATCTCAAATGCTCCTTAATGGGGTGTGAGTTCTAGAGGTTTGATGAGGG
448 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
4721529 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCATC
513 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC--A----CA--
4721594 GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-C--C-A-------ACGATGG
570 --CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGG
* * * *
4721648 TGCCCC-AGCGAAGAGAAATGTGGCACCAGCACATGCCCGAGCCCAGAATGTGCTGTC-AAACCC
633 TGCCCCGA-CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
*
4721711 TCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGAA
697 TCGGTCCA-TCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTA
* * * * * ** *
4721776 TGCCTAAGTCAACTCACAAAACAAGTGTGCGGGCACTCAGCCAGCCAGAGGGGCAAGATGTGCAA
761 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAA
* * * * * * *
4721841 GTCGGGGATCGGTCGGGTCCCCCTCTGCGTGTTGCCGATCTTGCTGCTGTAACCCTCAGT-CG
826 GCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCTTCA-TCCG
* * *
4721903 GTCCAATCTTAGACT-GAGAATGAACTTCGTATGCCTAAGCCAACAGACGAAACGAGTGGGCGGG
1 GTCCGATCTTAGACTAG-GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGG
* * * *
4721967 CGGGCGGACGAGCAGGCACTACGCCGGCCAGAGAGGCGGGATGAGCAAGCCTTAGATCGATAGGG
61 C-GG-GG-CGAGCGGGCACTACG-CGGCCAGAGA--CGGGATGCGCAAGCCGTGGATCGATAGGG
*
4722032 TGGTAGGTGAGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAA
120 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAA
*
4722097 TTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
185 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * * *
4722162 TCATGATTTTTGAAACTTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAGGGAGTTTTGGA
250 TCACGATTTTTGAAAC-TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * *
4722227 CCCAAACTTGGTAGACGTGATCCTTGTACTTTTT-TTGG-ATCCATAAAAACATTCAGCTAAAAA
314 CCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* *
4722290 CTCGAAGTGTACAAGATTTTGTGATCATTTGCAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
378 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
4722355 TACTGGCAGCAAACCTGTAAAGTCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTAGAGGTTTGAT
443 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* *
4722420 GAGGGATAGGAGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTAAACCC
508 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-------
* * *
4722485 CCCCCGACCCCCCCGATCGTCGGAACCTCAATGCCACCGGTCAGGTTCTCC-G-GA-------A-
566 --CAC-ACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGAC
* * ** * *
4722540 -ATGGTGCCCCAACGAAGAAAAATGCGATACCAGCACATGCCCGAGCCCAGAATGTGCTGCCACA
628 GATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* ** * * *
4722604 ACCCTCGGTCTGATCTGATCTTAGACTAGGAATGAACTCCATTTGCTTAGACCGGGAATGAACTC
693 ACCCTCGGTC-CATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTC
* * * * * *
4722669 CGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGTGCTTAGTCTGCCAGAGGGGCGGGATGC
757 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGC
* ** * *
4722734 GCAAG-C------CGA----GTCCCCCTCTGCGTGCTGCCGATCCTACTGTTGTAACCCTCAGTC
822 GCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCTTCA-TC
4722788 CG
886 CG
* * * * *
4722790 GTCCAATCTTACACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGCCGGAC
1 GTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG--
* *
4722855 GG-GTAGGCAGGCACTACGTCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
64 GGCG-A-GCGGGCACTACG-CGG-C-CAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * * ** *
4722919 AGGTAGGTTTAGGCAAATCTTCAGATTTCTATGTGCCAATGCAATTTTTATGGCTTGTAAATTCA
124 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
4722984 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
189 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * * *
4723049 GATTTTTAAAACATTTTCACGGTTCGGGATTTTTTAAGA-TTTTT-GGAAGGAGTTTTGGACCCA
254 GATTTTTGAAAC-TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
*
4723112 AACTTGGTAGACGTAATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTCA-CTAAAAACTCG
318 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAACTCG
* * *
4723176 AAGTGTACAAGATTTTGTGA-CATTAGAAAAAAGTGACCCCGTTTCAGACACTTTAATGGCTTAC
382 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC-TAC
* *
4723240 TGGCAAGCAAACCTGTAAAAATCTCAAATGCTCTTTAAGGAGGTGTGTGTTC-CAGAGGTTTGAA
446 TGGC-AGCAAACCTGT-AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-GAGGTTTG-A
*
4723304 TGAGGG-TA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCATGTG
507 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
4723359 TACAAGATTT
Statistics
Matches: 5165, Mismatches: 546, Indels: 327
0.86 0.09 0.05
Matches are distributed among these distances:
860 3 0.00
861 3 0.00
862 2 0.00
863 2 0.00
864 1 0.00
865 5 0.00
866 183 0.04
867 2 0.00
868 332 0.06
869 172 0.03
870 2 0.00
871 96 0.02
872 2 0.00
873 2 0.00
874 1 0.00
875 3 0.00
876 2 0.00
877 22 0.00
878 5 0.00
879 452 0.09
880 219 0.04
881 133 0.03
882 333 0.06
883 273 0.05
884 46 0.01
885 392 0.08
886 100 0.02
887 65 0.01
888 6 0.00
889 90 0.02
890 387 0.07
891 13 0.00
892 251 0.05
893 246 0.05
894 7 0.00
895 3 0.00
896 484 0.09
897 212 0.04
898 239 0.05
899 320 0.06
900 53 0.01
905 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
GTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGG
CGAGCGGGCACTACGCGGCCAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGATCGTCGG
AACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
TGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCATCCAATCTTAG
ACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
ACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCC
CCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCTTCATCCG
Found at i:4719130 original size:26 final size:26
Alignment explanation
Indices: 4719088--4719140 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
4719078 CAGTTCCAAT
* *
4719088 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4719114 CTTAGACT-GGAAGTGAACTCCGTATG
1 CTTAGACTGGGAA-TGAACTCCGTATG
4719140 C
1 C
4719141 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4723502 original size:177 final size:178
Alignment explanation
Indices: 4723178--4723535 Score: 564
Period size: 177 Copynumber: 2.0 Consensus size: 178
4723168 AAAACTCGAA
* *
4723178 GTGTACAAGATTTTGTGACATTAGAAAAAAGTGACCCCGTTTCAGACACTTTAATGGCTTACTGG
1 GTGTACAAGATTTTGTGACATTAGAAAAAAGTGACCCCATTTCAGACACTTTAATGGCTTACTAG
* *
4723243 CAAGCAAACCTGTAAAAATCTCAAATGCTCTTTAAGGAGGTGTGTGTTCCAGAGGTTTGAATGAG
66 CAAGCAAACCTGTAAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCCAGAAGTTTGAATGAG
4723308 GGTAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCAT
131 GGTAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCAT
* * *
4723356 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGC-TACTA
1 GTGTACAAGATTTTGTGA-CATTAGAAAAAAGTGACCCCATTTCAGACACTTTAATGGCTTACTA
*
4723420 GC-AGCAAACCTGT-AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-GAAGTTTG-ATG
65 GCAAGCAAACCTGTAAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTC-CAGAAGTTTGAATG
*
4723481 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
129 AGGG-TA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCAT
4723533 GTG
1 GTG
4723536 CGCACACCTC
Statistics
Matches: 167, Mismatches: 9, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
175 7 0.04
176 42 0.25
177 58 0.35
178 24 0.14
179 36 0.22
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.26
Consensus pattern (178 bp):
GTGTACAAGATTTTGTGACATTAGAAAAAAGTGACCCCATTTCAGACACTTTAATGGCTTACTAG
CAAGCAAACCTGTAAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCCAGAAGTTTGAATGAG
GGTAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCAT
Found at i:4723721 original size:26 final size:26
Alignment explanation
Indices: 4723692--4723744 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
4723682 CTGGTCCGAT
*
4723692 CTTAGACTGGGAACT-AACTCCGTATG
1 CTTAGACTAGGAA-TAAACTCCGTATG
*
4723718 CTTAGACTAGTAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
4723744 C
1 C
4723745 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:4724643 original size:177 final size:177
Alignment explanation
Indices: 4724251--4724771 Score: 920
Period size: 177 Copynumber: 2.9 Consensus size: 177
4724241 AAAACTCGAA
* * * *
4724251 GTGTACAAGAATTTGTGATCATTAGAAAAAAGT-TACCCCATTTCAGACACTTTAATGGCTACTG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCCATTTCAGACTCTTTAATGGCTACTG
* *
4724315 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTAGAGGTTTGATGAGGG
65 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
*
4724380 -TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCATAAATCAT
130 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAAATCAT
4724427 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGG
*
4724492 CAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
4724557 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCAT
131 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAAATCAT
4724604 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGG
4724669 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
*
4724734 ATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
130 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
4724772 TGTACATCAT
Statistics
Matches: 331, Mismatches: 11, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
176 120 0.36
177 143 0.43
178 68 0.21
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (177 bp):
GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGG
CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAAATCAT
Found at i:4725247 original size:345 final size:346
Alignment explanation
Indices: 4724615--4725298 Score: 1052
Period size: 345 Copynumber: 2.0 Consensus size: 346
4724605 TGTACAAGAT
* * **
4724615 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGGCAGCAAACCTG
1 TTTGTGACCATTGGAAAAAAGTGTCCCCATTTCAGACACTTTAACAGCTACTGGCAGCAAACCTG
*
4724680 TAAAATCTCAAATGCTCTTTAAGGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCA
66 TAAAATATCAAATGCTCTTTAAGGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCA
***
4724745 ATATAAGGGCCAAGTACCAGCACCCATTGTACATCATGTGCACACACCCCACTGGCCCCCCCGAT
131 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCACTGGCCCCCCCGAT
* * * * *
4724810 CATCGGAACCCCAATGCCGTCGGTGAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGACGAA
196 CATCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAA
* * * **
4724875 GAAAAATGCGGGACCAACACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTGGTTTG
261 GAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGTCCG
4724940 ATCTTAGACTGGGATGCGAAC
326 ATCTTAGACTGGGATGCGAAC
* * *
4724961 TTTGTGACCCTTGGAAAAAAGTGTCCCCATTTCAGACACTTTAACAGCTACTGGTAGCAAACTTG
1 TTTGTGACCATTGGAAAAAAGTGTCCCCATTTCAGACACTTTAACAGCTACTGGCAGCAAACCTG
4725026 TAAAATATCAAATGCTCTTTAA-GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGGGACC
66 TAAAATATCAAATGCTCTTTAAGGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGG-CC
*
4725089 AATATAAGGGCCAAGTACCAGCACCCATCACACATTATGTGCACGGAC-CCCCA-TGGCCCCCCC
130 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCAC--ACACCCCACTGGCCCCCCC
* * * * *
4725152 GATCGTTGGAACCCTAATGCCGCCGATCAGGTTCTCCGACGATGCTGCGACGATGGTGCCCTGAC
193 GATCATCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* *
4725217 GAGGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGT
258 GAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGT
4725282 CCGATCTTAGACTGGGA
323 CCGATCTTAGACTGGGA
4725299 ATCAACTCCG
Statistics
Matches: 306, Mismatches: 29, Indels: 7
0.89 0.08 0.02
Matches are distributed among these distances:
344 5 0.02
345 215 0.70
346 84 0.27
347 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.22
Consensus pattern (346 bp):
TTTGTGACCATTGGAAAAAAGTGTCCCCATTTCAGACACTTTAACAGCTACTGGCAGCAAACCTG
TAAAATATCAAATGCTCTTTAAGGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCACTGGCCCCCCCGAT
CATCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAA
GAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGTCCG
ATCTTAGACTGGGATGCGAAC
Found at i:4725316 original size:26 final size:26
Alignment explanation
Indices: 4725287--4725337 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
4725277 CCGGTCCGAT
4725287 CTTAGACTGGGAATCAACTCCGTATA
1 CTTAGACTGGGAATCAACTCCGTATA
4725313 CTTAGACTGGGAATCAACTCCGTAT
1 CTTAGACTGGGAATCAACTCCGTAT
4725338 GCCTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATA
Found at i:4726230 original size:25 final size:26
Alignment explanation
Indices: 4726187--4726238 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
4726177 CCGGTCTGAT
4726187 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4726213 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
4726238 C
1 C
4726239 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4727490 original size:901 final size:895
Alignment explanation
Indices: 4724961--4730610 Score: 7402
Period size: 901 Copynumber: 6.3 Consensus size: 895
4724951 GGATGCGAAC
* * ** * *
4724961 TTTGTGACCCTTGGAAAAAAGTGTCCCCATTTCAGACACTTTAACAGCTACTGGTAGCAAACTTG
1 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
4725026 TAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAA
66 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * ** **
4725091 TATAAGGGCCAAGTACCAGCACCCATCACACATTATGTGCACGGACCCCCATGGCCCCCCCGATC
131 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGG-CCCCCCGATC
* * * * * *
4725156 GTTGGAACCCTAATGCCGCCGATCAGGTTCTCCGACGATGCTGCGACGATGGTGCCCTGACGAGG
195 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAG
* * *
4725221 AAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGA
260 AAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGA
* * * *
4725286 TCTTAGACTGGGAATCAACTCCGTATACTTAGACTGGGAATCAACTCCGTATGCCTAAGTCAATC
325 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * **
4725351 CACGAAATGAGCGTAC-AGGTGCTCAGCCGGCCAAAGGGGCAGGATGGGCAAGCCGGGGATTGAC
390 CACGAAACGAGCG--CGGGGTGCTCAACCGGCCAAAGGGGCGGGATGCGCAAG-CGGGGATCGGT
** * * *
4725415 CGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCAGTCTGATCTTAGACT
452 CGGGTCCCCCTCTACGTGCTGCCGATCCTGCTAC-GCAACCCTCAGTCCGGTCCGATCTTAGACT
* * * * *
4725480 AGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGA---GTGGGCGGGCGGGCACTACGTC
516 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGCACTACGCC
* * ** *
4725542 GGCCGGAGAGATGGGATGCATAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
581 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
4725607 CATGTTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
646 CATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* *
4725672 CACGTGAAGTTTCATGGCGAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAG
711 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
* * * *
4725737 TTCGAGATTTTTTAAAATTTTTTCGGAACGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTG
776 TTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * *
4725802 TATATTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTTTAATGCCTAGAAGTGTACAATAT
841 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC-----T--C--GAAGTGTACAAGAT
* *
4725866 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACTTG
1 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
4725931 TAAAATCTTAAATGCGCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
66 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * *
4725996 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCGCACACCCCCCGACCCCCCGATC
131 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAC-CCCCCCGGCCCCCCGATC
** * ** *
4726061 -TCTAAAACCCAATGCCATCGGTCAGGTTCT-C--CGAT-CTCCGACGATGGTGCCCCGACAAAG
195 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAG
* * * ** * *
4726121 AAAAATACGACACCAACACATGCCCGAGCCTAGCATGTGCTGTAGCAACCCTCGGTCCGGTCTGA
260 AAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGA
*
4726186 TCTTAGACTGGGAATGAACTCCATATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACC
325 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * ** * *
4726250 CATGAAACGAACATGCGGGTTGCTCAACCGGCCAGAGGGGCGGGATATGCAAGCTAGGGATCAGT
390 CACGAAACGAGC--GCGGGGTGCTCAACCGGCCAAAGGGGCGGGATGCGCAAGC-GGGGATCGGT
* * * ** * * * * *
4726315 CGAGTCCCCC-CTGCGCGCTATCGATCCAGCTGTCGAAACCCTCAGTCCGGTCTGATCTTAGATT
452 CGGGTCCCCCTCTACGTGCTGCCGATCCTGCT-ACGCAACCCTCAGTCCGGTCCGATCTTAGACT
4726379 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-------GCGGGCGGGCACTACGCC
516 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGCACTACGCC
* *
4726437 GGCCAGAGAGACGGGATGTGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
581 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
4726502 CATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
646 CATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* *
4726567 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTATTTACGG
711 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
* * * * *
4726632 GTCGGGATTTTTTAAAATTTTGTCAGACGGATTTTTGGTCCCAAGCTTGGTAGACGTGATCCTTG
776 TTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
*
4726697 TATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
841 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
4726752 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGAAAACCTG
1 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
4726817 TAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
66 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
4726882 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAAACCGCCCCCGGCTCCCCCGAT
131 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACC-CCCCCGGC-CCCCCGAT
* * * * * * * *
4726947 CGTCAGAACCCCAATGTCGTCGATCAGGTTTTCCGGCGCTGCTCCTG-TGATGGTGCCCCGACGA
194 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-GACGATGGTGCCCCGACGA
* * * *
4727011 AGAAAAATACGACACCAACACATGCCCGAGCCCAACATGTGCTGCCGTAACCCTCGGTCTGGTCC
258 AGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCC
* *
4727076 GATCTTAGACTGGGAATGAACTCCGTATGCTTCGATTGGGAATGAACTCCGTATGCCTAAGTCAA
323 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
4727141 CCCACGAAACGAGCGCGGTGGTCCTCAGCCGGCCAGAGGGGCGGGATACGCAAGTCGGGGATCGG
388 CCCACGAAACGAGCGCGG-GGTGCTCAACCGGCCAAAGGGGCGGGATGCGCAAG-CGGGGATCGG
* * ** * *
4727206 TCGGGTCCCCCTCTACGTGCTACCGATCCTGCTATCGTAACTTTCAGTCTGGTCTGATCTTAGAC
451 TCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTA-CGCAACCCTCAGTCCGGTCCGATCTTAGAC
* *
4727271 TGGGAATGAACTCCGTATGCCT-AGACCAACCGACAAAACGAGCGGACGGGAGGGCGGGCACTAC
515 TGGGAATGAACTCCGTATGCCTAAG-CCAACCGACGAAACGAGCGG-CGGGCGGGCGGGCACTAC
4727335 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
578 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
**
4727400 CTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
643 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
4727465 CTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG
708 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * * * *
4727530 CGGTTTGGGATTTTTTAAAATTTTTTCAGAGGGAGTTTTGGTCCCAAACTTGGTAGATGTGATCC
773 CGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * *
4727595 TTGTATTTTTATTGGCATGCATAAAAAAATTCAGCTAAAAATTCGAAGTGTACAAGAT
838 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
4727653 TTTGTGACCATTTAAAAAAAGTGTCCTCATTTC-GAACACTTTAATGGCTACTGGCCGCAAACCT
1 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCT
* * * *
4727717 GTAAAATTTCAAATGCTCTTTAAAGGGGTGCGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCA
65 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * * *
4727782 ATATAAGGGCCAAGTACCAGCACGCATCTCACATCATGTGCGCAAACCGCCCGCGGCCACCCGAT
130 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACC-CCCCCGGCCCCCCGAT
* * * * * *
4727847 CGTCAGAACCCCAATGCCGCCGGTCAGATTCT-CTAGCGATGCTCCGACGATGGTGCCCGGGCAA
194 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCGACGATGGTGCCCCGACGA
* * *
4727911 AGAAAAATGTGGCACCAACACATGCTCGAGCCCAGCATGTGCTACCGCAA-CC-C--T-T-G---
258 AGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCC
4727967 G----T---CT--G-AT--A-T--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
323 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * * *
4728015 CCCACAAAATGAACTTGC-AGGTGCTCAACCGACTAAAGGGGCAGGATGCACAAGCCGGGGATCG
388 CCCACGAAACGAGC--GCGGGGTGCTCAACCGGCCAAAGGGGCGGGATGCGCAAG-CGGGGATCG
* * * * * *
4728079 GCCGGGTCCACCTCTACGTGCTGCCGATCCTCCTACCTCAACCCTCAGTCTGGTCCAATCTTAGA
450 GTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTA-CGCAACCCTCAGTCCGGTCCGATCTTAGA
* * *
4728144 CTGGAAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGACGGGCGGGCACTAT
514 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG-CGGGCGGGCGGGCACTAC
* * *
4728209 GTCGACCAGAGATACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
578 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
4728274 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGC
643 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
4728339 CTTCACGTGAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
708 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * * *
4728404 CGGTTTGCGATTTTTTAAAATTTTTTTAGAAGG-TGTTTTGG---CAGACTTGGTAGACGTGATC
773 CGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAT-TTTTGGCCCCAAACTTGGTAGACGTGATC
* * * *
4728465 CTTGTATTTTTCTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCCAAGTGTACAGGAT
837 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * *
4728524 TTTCTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCTGCAAACCTA
1 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
4728589 TAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
66 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * *
4728653 TATAATGGCCAAGCACCAGCACCCATCACACATCACACATCATGTGCGCACACCCCGCCGGCCCC
131 TATAAGGGCCAAGTACCAG----CA-C-C-CATCACACATCATGTGCGCACACCCCCCCGG-CCC
*
4728718 CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
188 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
* * * *
4728783 GATGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGAATGTGCTACCGCAACCCTCGGTCT
253 GACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT
* * * **
4728848 AGCCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATTTCTAA
318 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * *
4728913 GTCAACCCACGAAACGAGCATGC-GGGTGCTCAATCGGCCAAAGGGGCGGGATGCAC-AGCAGGA
383 GTCAACCCACGAAACGAGC--GCGGGGTGCTCAACCGGCCAAAGGGGCGGGATGCGCAAGC-GGG
* * * * * * * *
4728976 AATCGGTCGGGTCTCCCTCTACGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGATCCGATG
445 GATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCT-ACGCAACCCTCAGTCCGGTCCGATC
* * *
4729041 TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATGAGCGGGCGGGCGGGCGGGC
509 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CGAGC-GGCGGGCGGGC
*
4729106 GGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
569 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
4729171 TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
634 TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
4729236 CCCTTAAGCCTTCATGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
699 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* *
4729301 AACCTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-GAAAAGATTTTTGGCCCCAAACTTGGTA
764 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG-AAGGATTTTTGGCCCCAAACTTGGTA
4729365 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
828 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
4729430 GAT
893 GAT
* *
4729433 TTTGTGACCATTTGAAAAAAGTGTTCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
1 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
4729498 TAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
66 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * *
4729563 TATAAGGTCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCGACCCCCCCGTTC
131 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCG-GCCCCCCGATC
* * *
4729626 GTTGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCT----CGA--------CGACGAAG
195 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAG
* * * * *
4729679 AAAAATGCGGCACCAACACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTCCGGTCTGA
260 AAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGA
* * * * *
4729744 TCCTAGACAGGGAATGAACTCCATATGCTTCA-ATTGGGAATGAACTCTGTATGCCTAAGTCAAC
325 TCTTAGACTGGGAATGAACTCCGTATGCTT-AGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * *
4729808 CCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAA-GGGCGGGATGTGCAAGTCGGGGATCGG
389 CCACGAAACGAGCGCG-GGGTGCTCAACCGGCCA-AAGGGGCGGGATGCGCAAG-CGGGGATCGG
* ** * * * * * *
4729872 TAGGGTCCCCCTCTGTGTGCTGGCAATCCTGCTGCCGCCACCCTCGGTCCGGTCCAATCTTAGAC
451 TCGGGTCCCCCTCTACGTGCTGCCGATCCTGCT-ACGCAACCCTCAGTCCGGTCCGATCTTAGAC
* * * * *
4729937 TGGGAATGAACTCCGTATGCCTAATCCAACCAACGAAATGAGCGGGCAGGCGGGCGGGCACTACA
515 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGGCGGGCACTACG
* *
4730002 CCGGTCAGAGAGACGGGATGCGCCAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
579 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
4730067 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTGAAGCC
644 TTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
**
4730132 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAC
709 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
** * *
4730197 GGTTCGGGATTTTTTAAAATTTTTTTGGAA-GAGTTTGGGCCCCAAACTTGGTAGACGTGATCCT
774 GGTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * * *
4730261 TGTATTTTTGTTGGCAAGCACAAAAAAATTTAGCCAAAACCTCGAAGTGTACAAGAT
839 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * *
4730318 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGGCACTTTAGTGGCGACTGGCAGCAAACCTG
1 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
4730383 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-GGGGAGCCA
66 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG-GCCA
* * *
4730447 ATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGGCCCCCTCAA
130 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCCGGCCCCC-CGA
* * * * * * *
4730512 TCGCCGGAGCGCCATTGCCACCGGTCAGGTTCTCCGACGATGC-CCAAGCAATGGTGCCCCGACG
193 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGACG
4730576 AAGAAAAATGCGGCACCAACACATGCCCGAGCCCA
257 AAGAAAAATGCGGCACCAACACATGCCCGAGCCCA
4730611 AAAACCCTCG
Statistics
Matches: 4206, Mismatches: 429, Indels: 225
0.87 0.09 0.05
Matches are distributed among these distances:
870 57 0.01
871 150 0.04
872 1 0.00
874 415 0.10
875 5 0.00
876 8 0.00
877 131 0.03
878 5 0.00
879 2 0.00
881 3 0.00
882 2 0.00
883 1 0.00
884 6 0.00
885 247 0.06
886 422 0.10
887 18 0.00
888 66 0.02
889 157 0.04
890 99 0.02
891 9 0.00
892 163 0.04
893 122 0.03
894 1 0.00
895 293 0.07
896 3 0.00
897 3 0.00
898 2 0.00
899 122 0.03
900 293 0.07
901 546 0.13
902 95 0.02
903 100 0.02
904 23 0.01
905 175 0.04
906 246 0.06
907 3 0.00
909 155 0.04
910 57 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (895 bp):
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCG
TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGA
AAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGAT
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGCGGGGTGCTCAACCGGCCAAAGGGGCGGGATGCGCAAGCGGGGATCGGTCGGG
TCCCCCTCTACGTGCTGCCGATCCTGCTACGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGCACTACGCCGGCCA
GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
TTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGG
GATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
Found at i:4728894 original size:26 final size:26
Alignment explanation
Indices: 4728856--4728906 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
4728846 CTAGCCCGAT
4728856 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
4728882 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
4728907 TTCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4732908 original size:26 final size:26
Alignment explanation
Indices: 4732872--4732924 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4732862 CCAGTCTGAT
4732872 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4732898 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4732924 C
1 C
4732925 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4733403 original size:912 final size:897
Alignment explanation
Indices: 4731537--4735382 Score: 5350
Period size: 911 Copynumber: 4.3 Consensus size: 897
4731527 ACAATGGTCC
* * * * *
4731537 AAAATTTTTTCAGAGGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTCGGC
1 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
4731602 ATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
66 ATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
*
4731667 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAG
131 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
4731732 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACC
196 GGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * * *
4731797 CATCGCACATCATGAGCGCAC-CCCCCCGACCCTCCCAATCGTCGTAACCCCAGTGCCGTCGGTC
261 CATCGCACATCATGTGCGCACACCCCCCG-CCCCCCCGACCGTCGAAACCCCAATGCCGTCGGTC
* * * * *
4731861 AGGTTCTCTGGCGATGCTCTGGCGATGGTGCCTCAGTGAAGAAAAATGTGGCACCAGCACATGCC
325 AGGTTCTCCGGCGATGCTCTGACGATGGTGCCCCAGTGAAGAAAAATGCGGCACCAACACATGCC
** *
4731926 CGAGCCCAGCATGTGCTATCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCAT
390 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGT
* ** **
4731991 ATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATTAAACGAGCGTGCGGGCACTC
455 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTC
* * * ** *
4732056 AGCTGGCCAGAGGGGC-GGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGGGTGCTATCGA
520 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTACCGA
* * * *
4732120 TCCTACTGCCGCAACCCTC-GATCAGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
585 TCCTGCTGCCACAACCCTCAG-TCTGGTCCAATCTTACACTGGGAATGAACTCCGTATGCCTAAG
** * * * *
4732184 CCAAATGACAAAACGAGCAGGCGGGCGGGCGGGCAGGTACTACGTCGGCCAGAGAGACGGGATGA
649 CCAACCGACGAAACGAGCGGGCGGGC-AGCGGGC----ACTACGTCGGCCAGAGAGACGGGATGC
* **
4732249 GCAAGTCGTGGATCGATAAAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAAT
709 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAAT
* * * *
4732314 GCCATTTTTATGGCTTGTC-AATTCATACAATTGTCCATTCAGCTTTCACGTGAAGTTTCATGGC
774 GCCATTTTTATGGCTTG-CAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* *
4732378 AAGACGACTCGTTTTTTATTTTTCATGACTTTT-GAAACTTTTTACGGTTCAGGATATTTTT
838 AAGACGACTCGTTTTCTATTTTTCATGA-TTTTCAAAACTTTTTACGGTTCAGGAT-TTTTT
* * * * *
4732439 -AAATTTTTTTGAAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTACTTTTATTGGC
1 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
4732503 ATGCACAAAAAAATTCAG-TGAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
66 ATGCACAAAACAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * * *
4732567 ATCCCCATTTCAGACACTTTAATGGCTACTGGCCGTAAACCTGTAAAATCTCAAATGCTCTTTCA
130 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
4732632 GGGGGTATGAGTTCTTGAGGTTTGATGAGGGAAAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
195 GGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* *
4732697 CCATCGCACATCATGTGCGCACACCCCCCCTTGGCCTCCCGACCGTCGAAACCCCAATGCCGTCG
260 CCATCGCACATCATGTGCGCACA-CCCCCC--GCCCCCCCGACCGTCGAAACCCCAATGCCGTCG
* * * * * * *
4732762 GTCAGATTCTCCGACGATGCTCTGACGATGCTGCCCC-GATAAAGAAAAATGCAGCACCAGCCCA
322 GTCAGGTTCTCCGGCGATGCTCTGACGATGGTGCCCCAG-TGAAGAAAAATGCGGCACCAACACA
* * *
4732826 TGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGACCAGTCTGATCTTAGACTGGGAATGAACT
386 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACT
* *
4732891 CCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGT
451 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGT
* * * * *
4732956 GCTCAACCGGCCAGAGGGACGGGATGCACAAGCCGGGGATCCACCGGGTCCCCCTCTACGTGCTG
516 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTA
* **
4733021 CCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGTCTGGGAATGAACTCCGTATGCCT
581 CCGATCCTGCTGCCACAACCCTCAGTCTGGTCCAATCTTACACTGGGAATGAACTCCGTATGCCT
*
4733086 AAGCCAGCCGACGAAACGACCGGGCGGGTGGGTTGGCGGGCAGCGGGCACTACGTCGGCCAGAGA
646 AAGCCAACCGACGAAACGA----GC------G--GGCGGGCAGCGGGCACTACGTCGGCCAGAGA
* * * *
4733151 GACGGGATGCGCAAACCGTGGATCGATAGGGTGCTAGGTTGGTTTAGGAACATCTTCATATTTCT
699 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* *
4733216 ATGTGCCAATCCCATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
764 GTGTGCCAATGCCATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
4733281 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTC-GAGAT
829 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAG-GAT
4733345 TTTTT
893 TTTTT
* *
4733350 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGGCATGATCCTTGTATTTTTGTTGGC
1 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
4733415 ATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAACAGTG
66 ATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * * * *
4733480 TCCCCATTTTAAGACACTTTAATGGCCACTGGTAGCAAACCTGTAAAATCTTAAATGCTTTTTAA
131 TCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
4733545 GAGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
195 GGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * *
4733610 CCATCACACATCATGTGTGCACACCCCCCGGCCCCCCCGATCAC-T-GGAACCCCAATGCCGCCG
260 CCATCGCACATCATGTGCGCACACCCCCC-GCCCCCCCGA-C-CGTCGAAACCCCAATGCCGTCG
* * * *
4733673 GTCAGGTTCTCTGGTGATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAACACAT
322 GTCAGGTTCTCCGGCGATGCTCTGACGATGGTGCCCCAGTGAAGAAAAATGCGGCACCAACACAT
* * * * *
4733738 GCCCGAGCGCACCATGTGCTGTCGCAACCCTCGGTTCAGTCCGATCTTAGACTTGGAATGAACTC
387 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTC
* * *
4733803 CGTATGCTTAGACTAGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTG
452 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTG
* * * * * * **
4733868 CTCAGTCGGCCAGAGGGGTGGGATGCGCTAGCCGGGGATCGGCCGGGTCCCCCTTTGCAAGC-AG
517 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTA-
* * * * * *
4733932 TCGATCTTGCTACCACAACCCTCAGTCTAGTCTAATCTTACACTAGGAATGAACTCCGTATGCCT
581 CCGATCCTGCTGCCACAACCCTCAGTCTGGTCCAATCTTACACTGGGAATGAACTCCGTATGCCT
* *
4733997 AAGCCAACCGACGAAACGAGCGGGC-GG--GCGGGCACTACATCGGCCAGAGAGACGGGATACGC
646 AAGCCAACCGACGAAACGAGCGGGCGGGCAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * ** *
4734059 AAGCCGTGGATCGATAGGGT-GTTGGTGGGTTTAGGCACATCTTGATATTTCTGCATACCAATGC
711 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGC
* * *
4734123 CATTTTTATGGCTTGTAAATTCATACAGTGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
776 CATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * *
4734188 ACGACTCATTTTCTATTTTTAACGATTTTCAAAACTTTTTATGGTTCGGGATTTTTT
841 ACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGGATTTTTT
* * *
4734245 AAAATTTTTTCGGAATGAGTTTTGGCCCCAAACTTGGTAGACGTCATCCTTGTATTTTTTTTGGC
1 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* *
4734310 ATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTTCAATATTTTGTGACCATTTGAAAAAAGTG
66 ATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
4734375 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
131 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
4734440 GGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
196 GGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* ** *
4734505 CATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATCACCGGAAA-CCCAATGTCG-CTGG
261 CATCGCACATCATGTGCGCACACCCCCC-GCCCCCCCGACCGTC-GAAACCCCAATGCCGTC-GG
*
4734568 TCAGGTTCTCCGGCGATGCT-T--C----G-G---C---GAAGAAAAATGCGACACCAACACATG
323 TCAGGTTCTCCGGCGATGCTCTGACGATGGTGCCCCAGTGAAGAAAAATGCGGCACCAACACATG
* * * *
4734619 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCCTAGACTAGGAATGAACTCC
388 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCC
* *
4734684 GTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGC
453 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGC
* * *
4734749 TCAGCCGACCAGAGGGGCGAGATGCGCAAGCCGGGGATCGACCAGGTCCCCCT-TACGTGCTACC
518 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTACC
* *
4734813 GATCCTGCTGCCACAACCCTCAGTCTGGTCCTATCTTACACTGGAAATGAACTCCGTATGCCTAA
583 GATCCTGCTGCCACAACCCTCAGTCTGGTCCAATCTTACACTGGGAATGAACTCCGTATGCCTAA
* * * *
4734878 GCCAACTGACGAAATGAGCGGGCGGGCAGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
648 GCCAACCGACGAAACGAGCGGGCGGGCA-GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * * *
4734943 AGCCGTGGATTGATAGGGTGGTTGGTTGGTTTAGGCACATCTTCATATTTTTGCT-TGCCAATGC
712 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-TGTGCCAATGC
**
4735007 CATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG-AGTTTCATGGCCAA
776 CATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG-CAA
* **
4735071 GACAACTCGTTTTCTATTTTTCATTGATTTTTGAAACTTTTTACGGTTCAGGATTTTTT
840 GACGACTCGTTTTCTATTTTTCA-TGATTTTCAAAACTTTTTACGGTTCAGGATTTTTT
* * * * *
4735130 AAAATTTTTTTGAAAGGGGTTTTGCCCCCAAACTTGGTAGACGTCATCCTTGTATTTTTGTTGGC
1 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * *
4735195 ATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
66 ATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
*
4735260 TCCCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
131 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
*
4735325 GGGGTGTGAGTTCTTGAGGTTTGATTAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
196 GGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
4735383 ANNNNNNNNN
Statistics
Matches: 2628, Mismatches: 272, Indels: 105
0.87 0.09 0.03
Matches are distributed among these distances:
879 84 0.03
880 191 0.07
883 61 0.02
884 108 0.04
885 268 0.10
886 1 0.00
887 1 0.00
891 1 0.00
892 1 0.00
893 1 0.00
894 181 0.07
895 278 0.11
896 53 0.02
898 2 0.00
899 3 0.00
900 1 0.00
901 260 0.10
903 7 0.00
904 213 0.08
905 112 0.04
906 1 0.00
907 2 0.00
909 2 0.00
911 330 0.13
912 318 0.12
913 135 0.05
916 6 0.00
917 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
ATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
GGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
CATCGCACATCATGTGCGCACACCCCCCGCCCCCCCGACCGTCGAAACCCCAATGCCGTCGGTCA
GGTTCTCCGGCGATGCTCTGACGATGGTGCCCCAGTGAAGAAAAATGCGGCACCAACACATGCCC
GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTA
TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCA
GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTACCGAT
CCTGCTGCCACAACCCTCAGTCTGGTCCAATCTTACACTGGGAATGAACTCCGTATGCCTAAGCC
AACCGACGAAACGAGCGGGCGGGCAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTT
TTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGGATTTTTT
Found at i:4733812 original size:26 final size:26
Alignment explanation
Indices: 4733783--4733835 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4733773 TCAGTCCGAT
* *
4733783 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
4733809 CTTAGACTAGAAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
4733835 C
1 C
4733836 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCGTATG
Found at i:4734694 original size:26 final size:26
Alignment explanation
Indices: 4734665--4734715 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4734655 GGTCTGATCC
*
4734665 TAGACTAGGAATGAACTCCGTATGCT
1 TAGACTAGGAATGAACTCCATATGCT
*
4734691 TAGACTGGGAATGAACTCCATATGC
1 TAGACTAGGAATGAACTCCATATGC
4734716 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCATATGCT
Found at i:4735314 original size:885 final size:887
Alignment explanation
Indices: 4731537--4735382 Score: 5218
Period size: 912 Copynumber: 4.3 Consensus size: 887
4731527 ACAATGGTCC
* * * *
4731537 AAAATTTTTTC-AGAGGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTCGG
1 AAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
4731601 CATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
65 CATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
*
4731666 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAA
130 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
4731731 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCAC
195 GGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * ** * * *
4731796 CCATCGCACATCATGAGCGCAC-CCCCCCGACCCTCCCAATCGTCGTAACCCCAGTGCCGTCGGT
260 CCATCGCACATCATGTGCGCACACCCCCCG-CCCCCCCGATCACCGGAAACCCAATGCCGTCGGT
* * * *
4731860 CAGGTTCTCTGGCGATGCTCTGGCGATGGTGCCTCAGTGAAGAAAAATGTGGCACCAGCACATGC
324 CAGGTTCTCCGGCGATGCTCT-GC---GGTG-C-C---GAAGAAAAATGCGACACCAACACATGC
** *
4731925 CCGAGCCCAGCATGTGCTATCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCA
380 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCG
* ** **
4731990 TATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATTAAACGAGCGTGCGGGCACT
445 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCT
* * * ** *
4732055 CAGCTGGCCAGAGGGGC-GGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGGGTGCTATCG
510 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTACCG
* * * *
4732119 ATCCTACTGCCGCAACCCTC-GATCAGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
575 ATCCTGCTGCCACAACCCTCAG-TCTGGTCCAATCTTACACTGGGAATGAACTCCGTATGCCTAA
** * * *
4732183 GCCAAATGACAAAACGAGCAGGCGGGCGGGCGGGCAGGTACTACGTCGGCCAGAGAGACGGGATG
639 GCCAACCGACGAAACGAGCGGGCGGGC-AGCGGGC----ACTACGTCGGCCAGAGAGACGGGATG
* * **
4732248 AGCAAGTCGTGGATCGATAAAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAA
699 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGT-TGCCAA
* * * * *
4732313 TGCCATTTTTATGGCTTGTCAATTCATACAATTGTCCATTCAGCTTTCACGTGAAGTTTCATGGC
763 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* *
4732378 AAGACGACTCGTTTTTTATTTTTCATGACTTTT-GAAACTTTTTACGGTTCAGGATATTTTT
828 AAGACGACTCGTTTTCTATTTTTCATGA-TTTTCAAAACTTTTTACGGTTCAGGAT-TTTTT
* * * *
4732439 -AAATTTTTTTGAAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTACTTTTATTGGC
1 AAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
4732503 ATGCACAAAAAAATTCAG-TGAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
66 ATGCACAAAACAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * * *
4732567 ATCCCCATTTCAGACACTTTAATGGCTACTGGCCGTAAACCTGTAAAATCTCAAATGCTCTTTCA
130 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
4732632 GGGGGTATGAGTTCTTGAGGTTTGATGAGGGAAAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
195 GGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * **
4732697 CCATCGCACATCATGTGCGCACACCCCCCCTTGGCCTCCCGACCGTC-GAAACCCCAATGCCGTC
260 CCATCGCACATCATGTGCGCACA-CCCCCC--GCCCCCCCGATCACCGGAAA-CCCAATGCCGTC
* * * *
4732761 GGTCAGATTCTCCGACGATGCTCTGACGATGCTGCCCCGATAAAGAAAAATGC-AGCACCAGCCC
321 GGTCAGGTTCTCCGGCGATGCTCTG-CG--G-TG--CCG---AAGAAAAATGCGA-CACCAACAC
* * *
4732825 ATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGACCAGTCTGATCTTAGACTGGGAATGAAC
376 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAAC
* *
4732890 TCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGG
441 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * *
4732955 TGCTCAACCGGCCAGAGGGACGGGATGCACAAGCCGGGGATCCACCGGGTCCCCCTCTACGTGCT
506 TGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCT
* * **
4733020 GCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGTCTGGGAATGAACTCCGTATGCC
571 ACCGATCCTGCTGCCACAACCCTCAGTCTGGTCCAATCTTACACTGGGAATGAACTCCGTATGCC
*
4733085 TAAGCCAGCCGACGAAACGACCGGGCGGGTGGGTTGGCGGGCAGCGGGCACTACGTCGGCCAGAG
636 TAAGCCAACCGACGAAACGA----GC------G--GGCGGGCAGCGGGCACTACGTCGGCCAGAG
* * * *
4733150 AGACGGGATGCGCAAACCGTGGATCGATAGGGTGCTAGGTTGGTTTAGGAACATCTTCATATTTC
689 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * *
4733215 TATGTGCCAATCCCATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
754 TGT-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
4733280 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTC-GAGA
818 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAG-GA
4733344 TTTTTT
882 TTTTTT
* * *
4733350 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGGCATGATCCTTGTATTTTTGTTGGC
1 AAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
4733415 ATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAACAGTG
66 ATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * * * *
4733480 TCCCCATTTTAAGACACTTTAATGGCCACTGGTAGCAAACCTGTAAAATCTTAAATGCTTTTTAA
131 TCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
4733545 GAGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
195 GGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * *
4733610 CCATCACACATCATGTGTGCACACCCCCCGGCCCCCCCGATCACTGGAACCCCAATGCCGCCGGT
260 CCATCGCACATCATGTGCGCACACCCCCC-GCCCCCCCGATCACCGGAAACCCAATGCCGTCGGT
* * * *
4733675 CAGGTTCTCTGGTGATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAACACATGC
324 CAGGTTCTCCGGCGATGCTCTG-C---GGTG---C--CGAAGAAAAATGCGACACCAACACATGC
* * * * *
4733740 CCGAGCGCACCATGTGCTGTCGCAACCCTCGGTTCAGTCCGATCTTAGACTTGGAATGAACTCCG
380 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCG
* * *
4733805 TATGCTTAGACTAGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCT
445 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCT
* * * * * * ** *
4733870 CAGTCGGCCAGAGGGGTGGGATGCGCTAGCCGGGGATCGGCCGGGTCCCCCTTTGCAAGC-AGTC
510 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTA-CC
* * * * *
4733934 GATCTTGCTACCACAACCCTCAGTCTAGTCTAATCTTACACTAGGAATGAACTCCGTATGCCTAA
574 GATCCTGCTGCCACAACCCTCAGTCTGGTCCAATCTTACACTGGGAATGAACTCCGTATGCCTAA
* *
4733999 GCCAACCGACGAAACGAGCGGGC-GG--GCGGGCACTACATCGGCCAGAGAGACGGGATACGCAA
639 GCCAACCGACGAAACGAGCGGGCGGGCAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * *
4734061 GCCGTGGATCGATAGGGT-GTTGGTGGGTTTAGGCACATCTTGATATTTCTGCATACCAATGCCA
704 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-TTGCCAATGCCA
* *
4734125 TTTTTATGGCTTGTAAATTCATACAGTGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
768 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
4734190 GACTCATTTTCTATTTTTAACGATTTTCAAAACTTTTTATGGTTCGGGATTTTTT
833 GACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGGATTTTTT
* * * *
4734245 AAAATTTTTTCGGAATGAGTTTTGGCCCCAAACTTGGTAGACGTCATCCTTGTATTTTTTTTGGC
1 AAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* *
4734310 ATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTTCAATATTTTGTGACCATTTGAAAAAAGTG
66 ATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
4734375 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
131 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
4734440 GGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
196 GGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
*
4734505 CATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATCACCGGAAACCCAATGTCG-CTGGT
261 CATCGCACATCATGTGCGCACACCCCCC-GCCCCCCCGATCACCGGAAACCCAATGCCGTC-GGT
4734569 CAGGTTCTCCGGCGATGCT-T-C-G-G-CGAAGAAAAATGCGACACCAACACATGCCCGAGCCCA
324 CAGGTTCTCCGGCGATGCTCTGCGGTGCCGAAGAAAAATGCGACACCAACACATGCCCGAGCCCA
* * * *
4734629 GCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCCTAGACTAGGAATGAACTCCGTATGCTTAG
389 GCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * *
4734694 ACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGACC
454 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCC
* *
4734759 AGAGGGGCGAGATGCGCAAGCCGGGGATCGACCAGGTCCCCCT-TACGTGCTACCGATCCTGCTG
519 AGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTACCGATCCTGCTG
* * *
4734823 CCACAACCCTCAGTCTGGTCCTATCTTACACTGGAAATGAACTCCGTATGCCTAAGCCAACTGAC
584 CCACAACCCTCAGTCTGGTCCAATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * *
4734888 GAAATGAGCGGGCGGGCAGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
649 GAAACGAGCGGGCGGGCA-GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * * *
4734953 TGATAGGGTGGTTGGTTGGTTTAGGCACATCTTCATATTTTTGCTTGCCAATGCCATTTTTATGG
713 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-TTGCCAATGCCATTTTTATGG
* *
4735018 CTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG-AGTTTCATGGCCAAGACAACTCGTT
777 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG-CAAGACGACTCGTT
**
4735082 TTCTATTTTTCATTGATTTTTGAAACTTTTTACGGTTCAGGATTTTTT
841 TTCTATTTTTCA-TGATTTTCAAAACTTTTTACGGTTCAGGATTTTTT
* * * *
4735130 AAAATTTTTTTGAAAGGGGTTTTGCCCCCAAACTTGGTAGACGTCATCCTTGTATTTTTGTTGGC
1 AAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * *
4735195 ATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
66 ATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
*
4735260 TCCCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
131 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
*
4735325 GGGGTGTGAGTTCTTGAGGTTTGATTAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
196 GGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
4735383 ANNNNNNNNN
Statistics
Matches: 2621, Mismatches: 268, Indels: 127
0.87 0.09 0.04
Matches are distributed among these distances:
879 84 0.03
880 192 0.07
883 60 0.02
884 109 0.04
885 268 0.10
886 1 0.00
887 1 0.00
891 1 0.00
893 1 0.00
894 189 0.07
895 275 0.10
896 53 0.02
898 2 0.00
899 3 0.00
900 1 0.00
901 262 0.10
902 1 0.00
903 10 0.00
904 200 0.08
905 114 0.04
906 1 0.00
907 2 0.00
909 2 0.00
911 317 0.12
912 322 0.12
913 134 0.05
914 3 0.00
916 6 0.00
917 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (887 bp):
AAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
ATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
GGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
CATCGCACATCATGTGCGCACACCCCCCGCCCCCCCGATCACCGGAAACCCAATGCCGTCGGTCA
GGTTCTCCGGCGATGCTCTGCGGTGCCGAAGAAAAATGCGACACCAACACATGCCCGAGCCCAGC
ATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAG
AGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTACCGATCCTGCTGCC
ACAACCCTCAGTCTGGTCCAATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
AACGAGCGGGCGGGCAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTTGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCATGATTTTCAAAACTTTTTACGGTTCAGGATTTTTT
Found at i:4736945 original size:176 final size:176
Alignment explanation
Indices: 4736634--4736988 Score: 597
Period size: 176 Copynumber: 2.0 Consensus size: 176
4736624 AAAACTCGAA
* * *
4736634 GTGTACAAGATTTTGTGATCATTAGAAAAAAGTGACCCCGTTTCAGACACTTTAATGGCTACTGG
1 GTGTACAAGATTTTGTGACCATTAGAAAAAAGTGACCCCATTTCAGACACTTTAATGGCTACTAG
* *
4736699 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGTGTTCCAGAGGTTTGATGAGGGT
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCCAGAAGTTTGATGAGGGT
4736764 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCAT
131 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCAT
* * *
4736810 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTAG
1 GTGTACAAGATTTTGTGACCATTAGAAAAAAGTGACCCCATTTCAGACACTTTAATGGCTACTAG
4736875 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG-GGTGTGAGTTCTC-GAAGTTTGATGAGGG
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTC-CAGAAGTTTGATGAGGG
*
4736938 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
130 -TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCAT
4736986 GTG
1 GTG
4736989 CGCACACCTC
Statistics
Matches: 168, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
175 24 0.14
176 144 0.86
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (176 bp):
GTGTACAAGATTTTGTGACCATTAGAAAAAAGTGACCCCATTTCAGACACTTTAATGGCTACTAG
CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCCAGAAGTTTGATGAGGGT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCAT
Found at i:4737173 original size:26 final size:26
Alignment explanation
Indices: 4737144--4737196 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
4737134 CTGGTCCGAT
*
4737144 CTTAGACTGGGAACT-AACTCCGTATG
1 CTTAGACTAGGAA-TAAACTCCGTATG
*
4737170 CTTAGACTAGTAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
4737196 C
1 C
4737197 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:4738055 original size:182 final size:176
Alignment explanation
Indices: 4737717--4738240 Score: 735
Period size: 182 Copynumber: 2.9 Consensus size: 176
4737707 TGTACAAGAA
* * * *
4737717 TTGTGATCATTAGAAAAAAGT-TACCCCATTTCAGACACTTTAATGGCTACTGGCATCAAACCTG
1 TTGTGACCATTTGAAAAAAGTGT-CCCCATTTCAGACTCTTTAATGGCTACTGGCAGCAAACCTG
* *
4737781 TAACAAATCTCAAATGCTCTTTAA-GGGGTGT--GTTCTAGAGGTTTGATTGAGGGTAGGGGGCC
65 T-A-AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA-TGAGGATAGGGGGCC
4737843 AATGATAAGGGCCAAGTAACCAGCCACCCATCGTAAATCATGTGTAAAAAGATT
127 AAT-ATAAGGGCCAAGT-ACCAG-CACCCATCGTAAATCATGTGT-AAAAGATT
4737897 TTGTCGACCATTTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGGCAGCAAACCT
1 TTGT-GACCA-TTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGGCAGCAAACCT
*
4737962 ATAAAATCTCAAATTGCTCTTTAAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGATAGGGGGGC
64 GTAAAATCTCAAA-TGCTCTTT-AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGATA-GGGGGC
* *
4738027 CAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCATGTGTACAAGATT
126 CAATATAAGGGCCAAGTACCAGCACCCATCGTAAATCATGTGTAAAAGATT
4738078 TTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACTCTTTAATGGGCTACTGGCAGCAAACCTG
1 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAAT-GGCTACTGGCAGCAAACCTG
*
4738142 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-AAG-TTGATGAGGGATA-GGGGCC-A
65 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GGATAGGGGGCCAA
* *
4738203 -ATAAGGGCCAAGTACCAGCACCCATTGTACATCATGTG
129 TATAAGGGCCAAGTACCAGCACCCATCGTAAATCATGTG
4738241 CACACACCCC
Statistics
Matches: 319, Mismatches: 14, Indels: 30
0.88 0.04 0.08
Matches are distributed among these distances:
172 35 0.11
173 1 0.00
174 6 0.02
175 7 0.02
176 7 0.02
177 18 0.06
178 38 0.12
179 35 0.11
180 19 0.06
181 24 0.08
182 72 0.23
183 13 0.04
184 20 0.06
185 24 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (176 bp):
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGTAAATCATGTGTAAAAGATT
Found at i:4739685 original size:25 final size:26
Alignment explanation
Indices: 4739642--4739693 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
4739632 CCGGTCTGAT
4739642 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4739668 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
4739693 C
1 C
4739694 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4740938 original size:874 final size:882
Alignment explanation
Indices: 4738418--4744936 Score: 7518
Period size: 874 Copynumber: 7.3 Consensus size: 882
4738408 GGATGCGAAC
* * * * *
4738418 TTTGTGACCCTTGTGGAAAAAAATGTCCCTATTTCAGACACTTTTAATAGCTACT-GTAGCAAAA
1 TTTGTGACCATT-T-GAAAAAAGTGTCCCCATTTCAGACAC-TTTAATGGCTACTGGCAGC-AAA
* * *
4738482 CTTGTAAAATATCAAATGCTCTTTAAGGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
62 CCTGTAAAATCTCAAATGCTCTTTAA-AGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * ** **
4738547 GACCAATATAAGGGCCAAGTACCAGCACCCATCACACATTATCGTGCGCGGACC-CCCATGGTCC
126 G-CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT-GTGCGCAAACCGCCCCCGG-CC
* * * * * * * **
4738611 CCCCGATCGT-TGAA-CCCTATGCCGCCGATCAGGTTCTACGA-CGATGCTGCGATAATGGTGCC
188 CCCCGATCGTCAGAACCCCAATGTCGCCGGTCAGATTCT-CTAGCGATGCTCCGACGATGGTGCC
* * * * * * * *
4738673 CTGACGAGGAAAAATACGGTACCAACACATGCCCGAG-CCAGCATGTGTTGCCGTAACCTCGGGT
252 CCGACAAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACC-C--GT
* * * *
4738737 CCGGTCGATCTTTAGACTGGGGAATCAACTCCGTATACTTAGA-TGGGAATCAACTCCGTATGCC
314 ---GTCG-------GTCT---G-AT-AACT-CGAATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * **
4738801 TAAGTCAATCCAACGAAATGAGCGTACAGGTGCTCAGCCGGCCAAAGGGGCAGGATGGGCAAGCC
363 TAAGTCAA-CCCACGAAACGAGCGTGCAGGTGCTCAACCGGCCAAAGGGGCGGGATGCACAAGCC
* ** ** * ** *
4738866 GGGGATTGACCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTA-CTGCAACCCTCGGTCCAGTCT
427 GGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCT-CAACCCTCAGTCTGGTCC
* * * * * *
4738930 GATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGAGTGGGCGGGC-GGC
491 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGACGGGC
* * * ** *
4738994 GGGCACTACGTCGGCCGGAGAGATGGGATGCATAAGCCATGGATCGATAGGGGTGGTAGGT-GG-
556 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA-GGGTGGTAGGTGGGT
*
4739057 TTAGGCACATCTTCATGTTTCTGTGTGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGG
620 TTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
4739121 T-CCTTAAGCCTTCACGTGAAGTTTCATGGCGAGACGACTCGTTTTCTATTTTTCACGATTTTTG
685 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * *
4739185 AAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCGGAACGATTTTTGGCCCCAAACTTGGTA
750 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAAGATTTTTGGCCCCAAACTTGGTA
* * *
4739250 GACATGATCCTTGTATATTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTTTAATGCCTAGA
815 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC-----T--C--GA
*
4739315 AGTGTACAATAT
871 AGTGTACAAGAT
* *
4739327 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACTTG
1 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
4739392 TAAAATCTCAAATGCGCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
66 TAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
** *
4739457 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCGCACAC-CCCCCGACCCCCCGAT
131 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAAC-CGCCCCCGGCCCCCCGAT
* * * *
4739521 C-TCTAAAACCCCAA--T-GCC-ATC-G---GTC-AG-G-TTCTCCGACGATGGTGCCCCGACAA
195 CGTC-AGAACCCCAATGTCGCCGGTCAGATTCTCTAGCGATGCTCCGACGATGGTGCCCCGACAA
* * * ***
4739574 AGAAAAATACGACACCAACACATGCCCGAGCCTAGCATGTGCTGTAGCAACCCTCGGTCCGGTCT
259 AGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAA-CC-C-GT---GTC-
* *
4739639 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAA
317 G------GTCT--G-AT-AACTCGA-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * *** ** *
4739703 CCCATGAAACGAACATGCGGGTGCTCAACCGGCCAGAGGGGCGGGATATGCAAGCTAGGGATCAG
371 CCCACGAAACGAGCGTGCAGGTGCTCAACCGGCCAAAGGGGCGGGATGCACAAGCCGGGGATCGG
* * * * ** * ** ** * ** * *
4739768 TCGAGTCCCCCCCTGCGCGCTATCGATCCAGCTGTCGAAACTCTCAGTCCAGTCTGATCTTAGAT
436 TCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCTCAACCCTCAGTCTGGTCCGATCTTAGAC
4739833 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-C-GA--G-CGGGCGGGCACTACG
501 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGACGGGCGGGCACTACG
* *
4739890 CCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATC
566 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
4739955 TTCATATTTTTGTGTGCCAATGCCATTTTTATGGGTTGTAAATTCATACAATGGTCCCTTAAGCC
631 TTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* *
4740020 TTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC
696 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* * ** * *
4740085 GGTTTGGCATTTTTTAAAATTTTTTCAGAGGGATTTTTGGTCCCAAACTTGGTAGATGTGATCCT
761 GGTTCGGGATTTTTTAAAATTTTTTCAGAAAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * *
4740150 TGTATTTTTATTGGCATGCATAAAAAAATTCAGCTAAAAATTCGAAGTGTACAAGAT
826 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * * *
4740207 TTTGTGACCGTTTAAAAAAAGTGTCCTCATTTC-GAACACTTTAATGGCTACCGGCCGCAAACCT
1 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCT
* *
4740271 GTAAAATTTCAAATGCTCTTTAAAGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
65 GTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
*
4740336 ATATAAGGGCCAAGTACCAGCACGCATCGCACATCATGTGCGCAAACCGCCCCCGGCCCCCCGAT
130 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCGCCCCCGGCCCCCCGAT
* *
4740401 CGTCAGAACCCCAATGTCGCCGGTCAGATTCTCTAGCGATGCTCCGACGATGGTGCCCGGGCAAA
195 CGTCAGAACCCCAATGTCGCCGGTCAGATTCTCTAGCGATGCTCCGACGATGGTGCCCCGACAAA
* *
4740466 GAAAAATGTGGCACCAACACATGCTCGAGCCCAGCATGTGCTACCGCAACCC-T-T-GGTCTGAT
260 GAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACCCGTGTCGGTCTGAT
* * * *
4740528 -A-T-G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAACTTGCA
325 AACTCGAATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCA
* * * * *
4740588 GGTGCTCAACCGACTAAAGGGGCAGGATGCACAAGCCGGGGATCGGCCGGGTCCACCTCTACGTG
390 GGTGCTCAACCGGCCAAAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTG
* * *
4740653 CTGCCGATCCTCCTACCTCAACCCTCAGTCTGGTCCAATCTTAGACTGGAAATGAACTCCGTATG
455 CTGCCGATCCTGCTACCTCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
4740718 CCTAAGCCAACCGACGAAACGAGCGAACGGACGGGCGGGCACTATGTCGACCAGAGATACGGGAT
520 CCTAAGCCAACCGACGAAACGAGCGGACGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
*
4740783 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCA
585 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCA
4740848 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
650 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * * *
4740913 CAAGACGACTCGTTTTCTTTTTTTCATGATTTTTGAAACTATTTACGGGTCGGGATTTTTAAAAA
715 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
* * * *
4740978 TTTTGTCAGACAGATTTTTGGTCCCAAGCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
780 TTTTTTCAGAAAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
*
4741043 A-TAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
845 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
4741080 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGAAAACCTG
1 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
4741145 TAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
66 TAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
4741210 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAAACCGCCCCCGGCTCCCCCGAT
131 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCGCCCCCGGC-CCCCCGAT
* * * ** * ** *
4741275 CGTCAGAACCCCAATGTCGTCGATCAGGTTCTCCGGCGCTGCTCCGGTGATGGTGCCCCGACGAA
195 CGTCAGAACCCCAATGTCGCCGGTCAGATTCTCTAGCGATGCTCCGACGATGGTGCCCCGACAAA
* * * * *
4741340 GAAAAATACGACACCAACACATGCCCGAGCCCAACATGTGCTGCCGTAACCCTCGGTCTGGTCCG
260 GAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAA-CC-C-G--T-GT-CG
* * * * *
4741405 ATCTTAGACTGGGAATGAACTCCGTATGCTTCGATTGGGAATGAACTCCGTATGCCTACGTCAAC
318 ------GTCT--G-AT-AACT-CGAATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
** * * * *
4741470 CCACGAAACGAGCGTGGTGGTCCTCAGCCGGCCAGAGGGGCGGGAT--AGCAAGTCGGGGATCGG
372 CCACGAAACGAGCGTGCAGGTGCTCAACCGGCCAAAGGGGCGGGATGCA-CAAGCCGGGGATCGG
* * * *
4741533 TCGGGTCCCCCTCTACGTGCTACCGATCCTGCTATCGT-AA-CTTCAGTCTGGTCTGATCTTAGA
436 TCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTA-CCTCAACCCTCAGTCTGGTCCGATCTTAGA
*
4741596 CTGGGAATGAACTCCGTATGCCT-AGACCAACCGACAAAACGAGCGGACGGGA-GGGCGGGCACT
500 CTGGGAATGAACTCCGTATGCCTAAG-CCAACCGACGAAACGAGCGGAC-GGACGGGCGGGCACT
4741659 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
563 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
4741724 ATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
628 ATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
4741789 GCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
693 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * ** * * *
4741854 TGCGGTTTGGGATTTTTTAAAATTTTTTCAGAGGGAGTTTTGGTCCCAAACTTGGTAGATGTGAT
758 TACGGTTCGGGATTTTTTAAAATTTTTTCAGAAAGATTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
4741919 CCTTGTATTTTTATTGGCATGCATAAAAAAATTCAGCTAAAAATTCGAAGTGTACAAGAT
823 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * * *
4741979 TTTGTGACCGTTTAAAAAAAGTGTCCTCATTTC-GAACACTTTAATGGCTACCGGCCGCAAACCT
1 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCT
* *
4742043 GTAAAATTTCAAATGCTCTTTAAAGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
65 GTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
*
4742108 ATATAAGGGCCAAGTACCAGCACGCATCGCACATCATGTGCGCAAACCGCCCCCGGCCCCCCGAT
130 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCGCCCCCGGCCCCCCGAT
* *
4742173 CGTCAGAACCCCAATGTCGCCGGTCAGATTCTCTAGCGATGCTCCGACGATGGTGCCCGGGCAAA
195 CGTCAGAACCCCAATGTCGCCGGTCAGATTCTCTAGCGATGCTCCGACGATGGTGCCCCGACAAA
* *
4742238 GAAAAATGTGGCACCAACACATGCTCGAGCCCAGCATGTGCTACCGCAACCC-T-T-GGTCTGAT
260 GAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACCCGTGTCGGTCTGAT
* * * *
4742300 -A-T-G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAACTTGCA
325 AACTCGAATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCA
* * * * *
4742360 GGTGCTCAACCGACTAAAGGGGCAGGATGCACAAGCCGGGGATCGGCCGGGTCCACCTCTACGTG
390 GGTGCTCAACCGGCCAAAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTG
* * *
4742425 CTGCCGATCCTCCTACCTCAACCCTCAGTCTGGTCCAATCTTAGACTGGAAATGAACTCCGTATG
455 CTGCCGATCCTGCTACCTCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
4742490 CCTAAGCCAACCGACGAAACGAGCGAACGGACGGGCGGGCACTATGTCGACCAGAGATACGGGAT
520 CCTAAGCCAACCGACGAAACGAGCGGACGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
*
4742555 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCA
585 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCA
*
4742620 ATGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
650 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * *
4742685 CAAGATGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGCGATTTTTTAAAA
715 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
* * * *
4742750 TTTTTTTAG-AAGGTGTTTTGG---CAGACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATG
780 TTTTTTCAGAAAGAT-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * * *
4742811 CAAAAAAAAATTTAGCTAAAAACTCCAAGTGTACAGGAT
844 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
** * *
4742850 TTTCCGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCTGCAAACCTG
1 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
4742915 TAAAATCTCAAATGCTCTTT-AAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
66 TAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * * ***
4742979 TATAATGGCCAAGCACCAGCACCCATCACACATCACACATCATGTGCGCACACC-CCGCCAACCC
131 TATAAGGGCCAAGTACCAG----CA-C-C-CATCGCACATCATGTGCGCAAACCGCC-CCCGGCC
* * * * * *
4743043 CCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT-TCGACGATGCTCCGACGATGGTGCC
188 CCCCGATCGTCAGAACCCCAATGTCGCCGGTCAGATTCTCTAG-CGATGCTCCGACGATGGTGCC
** * *
4743107 CCGATGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGAATGTGCTACCGCAACCC-TCGG
252 CCGACAAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACCCGT--G
* **
4743171 TCTAGCCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATTTC
315 TC--G---G----T---CT--G-AT-AACT-CGAATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * *
4743236 TAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAATCGGCCAAAGGGGCGGGATGGAC-AGCAG
363 TAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAACCGGCCAAAGGGGCGGGATGCACAAGCCG
** ** * ** * * * * * *
4743300 GAAATCGGTTAGGTCTCCCTCTACGTGCTGTTGATCCTGCTGCCACAACCCTCGGTCCGATTCGA
428 GGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCTCAACCCTCAGTCTGGTCCGA
* * * * * *
4743365 TGTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATGAGCGGGCGGGCGGGCGG
493 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CGAGCGGACGGACGG
* *
4743430 GCGGGCACTACGCCGACCAGAGAGACGGCATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
554 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*
4743495 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
619 TTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
4743560 GTCCCTTAAGCCTTCATGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
684 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
*
4743625 GAAACCTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-GAAAAGATTTTTGGCCCCAAACTTGG
749 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG-AAAGATTTTTGGCCCCAAACTTGG
4743689 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
813 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
4743754 AAGAT
878 AAGAT
* *
4743759 TTTGTGACCATTTGAAAAAAGTGTTCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
1 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
4743824 TAAAATCTCAAATGCTCTTT-AAGGGTGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
66 TAAAATCTCAAATGCTCTTTAAAGGG-GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * *
4743888 ATATAAGGTCCAAGTACCAGCACCCATCGCACATCATGTGCGC--A-CACCCCCGACCCCCCCGT
130 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCGCCCCCG-GCCCCCCGA
** **
4743950 TCGTTGGAACCCCAATGTCGCCGGTCA-AGTTCTCCGGCGATGCT-CGACGA--------CG---
194 TCGTCAGAACCCCAATGTCGCCGGTCAGA-TTCTCTAGCGATGCTCCGACGATGGTGCCCCGACA
* ** *
4744002 AAGAAAAATGCGGCACCAACACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTCCGGTC
258 AAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACCCGT-GT-CGGTC
** * *
4744067 TGATCCTAGACAGGGAATGAACTCCATATGCTTCAATTGGGAATGAACTCTGTATGCCTAAGTCA
321 TGA---TA-AC-TCGAATG--CT---TA-G-----ACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * ** *
4744132 ACCCAAGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAA-GGGCGGGATGTGCAAGTCGGGGATC
370 ACCCACGAAACGAGCGTGCAGGTGCTCAACCGGCCA-AAGGGGCGGGATGCACAAGCCGGGGATC
* ** * * * * * * *
4744196 GGTAGGGTCCCCCTCTGTGTGCTGGCAATCCTGCTGCCGCCACCCTCGGTCTGGTCCAATCTTAG
434 GGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCTCAACCCTCAGTCTGGTCCGATCTTAG
* * * * * *
4744261 ACTGGGAATGAACTCCGTATGCCTAATCCAACCAATGAAATGAGCGGGCAGG-CGGGCAGGCACT
499 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAC-GGACGGGCGGGCACT
* * *
4744325 ACACCGGTCAGAGAGACGGGATGCGCCAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
563 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
** *
4744390 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTGAA
628 ATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
**
4744455 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTT
693 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * * * *
4744520 TGCGGTTCGGGATTTTTTAAAATTTTTT-TGGAAGAGTTTGGGCCCCAAACTTGGTAGACGTGAT
758 TACGGTTCGGGATTTTTTAAAATTTTTTCAGAAAGATTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
4744584 CCTTGTATTTTTGTTGGCAAGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGAT
823 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
4744644 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGGCACTTTAGTGGCGACTGGCAGCAAACCTG
1 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
4744709 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-GGGGAGCCA
66 TAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG-GCCA
* * * * *
4744773 ATATAAGGGCTAAGTACAAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGGCCCCCTCAA
130 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCGCCCCCGGCCCCC-CGA
* * * * * * * * * * *
4744838 TCGCCGGAGCGCCACTGCCACCGGTCAGGTTCTC-CGACGATGC-CCAAGCAATGGTGCCCCGAC
194 TCGTCAGAACCCCAATGTCGCCGGTCAGATTCTCTAG-CGATGCTCCGA-CGATGGTGCCCCGAC
*
4744901 GAAGAAAAATGCGGCACCAACACATGCCCGAGCCCA
257 AAAGAAAAATGCGGCACCAACACATGCCCGAGCCCA
4744937 AAAACCCTCG
Statistics
Matches: 4874, Mismatches: 562, Indels: 357
0.84 0.10 0.06
Matches are distributed among these distances:
865 8 0.00
866 158 0.03
867 2 0.00
869 2 0.00
870 62 0.01
871 146 0.03
872 73 0.01
873 260 0.05
874 671 0.14
875 9 0.00
876 7 0.00
877 138 0.03
878 9 0.00
879 4 0.00
880 203 0.04
881 4 0.00
882 6 0.00
883 7 0.00
884 9 0.00
885 256 0.05
886 280 0.06
887 45 0.01
888 74 0.02
889 290 0.06
890 102 0.02
891 64 0.01
892 6 0.00
893 134 0.03
894 91 0.02
895 35 0.01
896 10 0.00
897 7 0.00
898 444 0.09
899 258 0.05
900 114 0.02
901 49 0.01
902 98 0.02
903 114 0.02
904 46 0.01
905 46 0.01
906 277 0.06
907 32 0.01
908 1 0.00
909 168 0.03
910 55 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (882 bp):
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCGCCCCCGGCCCCCCGATC
GTCAGAACCCCAATGTCGCCGGTCAGATTCTCTAGCGATGCTCCGACGATGGTGCCCCGACAAAG
AAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACCCGTGTCGGTCTGATA
ACTCGAATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAG
GTGCTCAACCGGCCAAAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGC
TGCCGATCCTGCTACCTCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
CTAAGCCAACCGACGAAACGAGCGGACGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAA
TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
TTTTTCAGAAAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
Found at i:4743220 original size:26 final size:26
Alignment explanation
Indices: 4743182--4743232 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
4743172 CTAGCCCGAT
4743182 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
4743208 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
4743233 TTCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4747228 original size:26 final size:26
Alignment explanation
Indices: 4747199--4747251 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4747189 CCAGTCTGAT
*
4747199 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4747225 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4747251 C
1 C
4747252 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4748144 original size:26 final size:26
Alignment explanation
Indices: 4748115--4748167 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4748105 TCAGTCCGAT
* *
4748115 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
*
4748141 CTTAGACTAGAAATGAACTCTGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
4748167 C
1 C
4748168 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCGTATG
Found at i:4749034 original size:26 final size:26
Alignment explanation
Indices: 4749005--4749055 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4748995 GGTCCGATCC
*
4749005 TAGACTAGGAATGAACTCCGTATGCT
1 TAGACTAGGAATGAACTCCATATGCT
*
4749031 TAGACTGGGAATGAACTCCATATGC
1 TAGACTAGGAATGAACTCCATATGC
4749056 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCATATGCT
Found at i:4749932 original size:26 final size:26
Alignment explanation
Indices: 4749903--4749955 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4749893 CCGATCCGAT
4749903 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4749929 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4749955 C
1 C
4749956 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4750862 original size:26 final size:26
Alignment explanation
Indices: 4750810--4750862 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
4750800 CCGGTCCGAT
* * *
4750810 CTTAGACTGGGAATGAATTTCGAATG
1 CTTAGACTAGGAATGAACTCCGAATG
*
4750836 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGAATG
4750862 C
1 C
4750863 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGAATG
Found at i:4751453 original size:904 final size:902
Alignment explanation
Indices: 4745862--4764833 Score: 22080
Period size: 900 Copynumber: 21.3 Consensus size: 902
4745852 ACAATGGTCC
* * * * *
4745862 AAAATTTTTTCAGAGGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTCGGC
1 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
4745927 ATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
66 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
4745992 TCCCCATTTCAAACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAG
131 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
4746057 GGGGTGTGAGTTCTCGACGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACC
196 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * * *
4746122 CATCGCACATCATGAGCGCAC-CCCCCCGGACCCCCCCAATCGTCGTAACCCCAGTGCCGTCGGT
261 CATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGT
* * * * * * * *
4746186 CAGGTTCTCTGGCGATGCTCTGGCGATGGTGCCTC-AGTGAAGAAAAATGTGGCACCAGCACATG
325 CAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAACACATG
** * *
4746250 CCCGAGCCCAGCATGTGCTATCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCC
389 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTC
* * ** **
4746315 ATATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATTAAACGAGCGTGCGGGCAC
454 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGC
* * * * **
4746380 TCAGCTGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGGGTGCTATC
519 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCC
**
4746445 GATCCTACTGCCGCAACCCTCGA-TCAGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTA
584 GATCCTACTGCCGCAACCCTC-ATTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
** * * * *
4746509 AGCCAAATGACAAAACGAGCAGGCGGGCGGGCGGGCAGGTACTACGTCGGCCAGAGAGACGGGAT
647 AGCCAACCGACGAAACGAGCAGGCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGAT
* * ** **
4746574 GAGCAAGTCGTGGATCGATAAAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCA
712 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
* * * * *
4746639 ATGCCATTTTTATGGCTTGTCAATTCATACAATTGTCCATTCAGCTTTCACGTGAAGTTTCATGG
777 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* *
4746704 CAAGACGACTCGTTTTTTATTTTTCATGACTTTT-GAAACTTTTTACGGTTCAGGATATTTTT
842 CAAGACGACTCGTTTTCTATTTTTCATGA-TTTTCGAAACTTTTTACGGTTCGGGAT-TTTTT
* * * *
4746766 -AAATTTTTTTGAAAGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGC
1 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
4746830 ATGCACAAAAAAATTCAG-TGAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGT
66 ATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* *
4746894 GTCCCCATTTCAGACACTTTAATGGCTACTGGCCA-TAAACCTGTAAAATCTCAAATGCTCTTTC
130 GTCCCCATTTCAGACACTTTAATGGCTACTGG-CAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * *
4746958 AGGGGGTATGAGTTCTTGAGGTTTGATGAGGGAAAGGGGGCCAATATAAGGGCCAAGTACCAGCA
194 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * * * *
4747023 CCCATCGCACATCATGTGCGCACACCCCCCCTAGCCCTCCCGACCGTCGAAACCCCAATGTCGTC
259 CCCATCGCACATCATGTGCGCACA-CCCCCC-GGCCCCCCCGATCGCCGGAACCCCAATGCCGCC
* * * ** * * *
4747088 GGTCAGATTCTCCGACGATGCTCTGACGATGCTGCCCCGATAAAGAAAAATGCAGCACCAGCCCA
322 GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACA
* * * * *
4747153 TGCCCGAGCCTAGCATGTGCTGCCGTAACCCTCGGACCAGTCTGATCTTAGACTGGGAATGAAC-
387 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* *
4747217 TCTGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAATATGAGCTGTCTG
452 TC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA-ACGAGC-G--TG
* * * * *** *
4747282 CGGAATGCTCAACCGGCCAGA-GGACGGGATGCACAAGCCGGGGATCCACCGGGT-CCCCTCTTA
512 CGG-GTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC-TG
* ** *
4747345 CGTGCTGCCGATCCT-GTGCCGCAACCCTCA-TCTGGTCCAATCTTAGTCTTGGGAATGAACTCC
575 CGTGCTGCCGATCCTACTGCCGCAACCCTCATTC-GGTCTGATCTTAGAC-TGGGAATGAACTCC
* * *
4747408 GTATGCCATAAGCCAGCC-ACGAAACGACCGGCGGGTGGTGTTGGCGCGCGGCA-GCGGGCACTA
638 GTATGCC-TAAGCCAACCGACGAAACGA---GC----AG-G-CGG-GCG-GGCAGGCGGGCACTA
* * * *
4747471 CGTCGGCCAGAGA-ACGGGATGCGCAAACCGTGGATCGATA-GGTGCTAGGTTGGTTTAGGAACA
691 CGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
4747534 TCTTCATA-TTCT-AATGGTCCAAAT-CCATTTTTTAATGGCTTGCAAATTCATAACAAT--TCA
756 TCTTCATATTTCTGCAT-G-CC-AATGCCA-TTTTT-ATGGCTTGTAAATTCAT-ACAATGGTC-
*
4747594 CCTTAAGCCTTCACGTGAAGTTTCAT-GCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAA
814 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAA
*
4747658 AC-TTTTACGGTTCGAGATTTTTT
879 ACTTTTTACGGTTCGGGATTTTTT
* *
4747681 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTTAGGCATGATCCTTGTATTTTTGTTGG
1 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG-TAGACGTGATCCTTGTATTTTTGTTGG
* *
4747746 CAATGCACAAAACAATTCAGCT-AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAACAG
65 C-ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* * * * *
4747810 TGTCCCCATTTTAAGACACTTTAATGGCCACTGGTAGCAAACCTGTAAAATCTTAAATGCCTTTT
129 TGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG-CTCTT
* *
4747875 TAAGAGGGTGTGAGTTTCTTGAGGTTTGATTGA-GGATAGGGGGCCAATATAAGGGGCC-AGTAC
192 TAAGGGGGTGTGAG-TTCTCGAGGTTTGA-TGAGGGATAGGGGGCCAATATAA-GGGCCAAGTAC
* * * *
4747938 CAGCACCCATCACACATCATGTGTGCACACCCCCCCGG--CCCCCGATCACTGGAA-CCCAATGC
254 CAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGC
* **
4748000 CGCCGGTCAGGTTCTCTGGTGGATGCTCCGACGAT-GTGCCCC-AGCGAAGAAAAATGCGGCACC
318 CGCCGGTCAGGTTCTC-CGACGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACC
* * * * * *
4748063 AACACATGCCCGAGCGCACCATGTGCTGTCGCAACCCTCGGTTCAGTCCGATCTTAGACTTGGAA
381 AACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
* * * * *
4748128 TGAACTCCGTATGCTTAGACTAGAAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGT
446 TGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * *
4748193 GCGGGTGCTCAGTCGGCCAGAGGGGTGGGATGCGCTAGCCGGGGATCGGCCGGGTCCCCCTTTGC
511 GCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGC
** * * * * * * * * * * *
4748258 AAGCAGTCGATCTTGCTACCACAACCCTCAGTCTAGTCTAATCTTACACTAGGAATGAACTCCGT
576 GTGCTGCCGATCCTACTGCCGCAACCCTCATTC-GGTCTGATCTTAGACTGGGAATGAACTCCGT
* * * *
4748323 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGGCGGGCACTACATCGGCCAGAGAG
640 ATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAG
* * *
4748388 ACGGGATACGCAAGCCGTGGATCGATAGGGT-GTTGGTGGGTTTAGGCACATCTTGATATTTCTG
705 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
* *
4748452 CATACCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGT
770 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * * * *
4748517 TTCATGGCAAGACGACTCATTTTCTATTTTTAACGATTTTCAAAACTTTTTATGGTTCGGGATTT
835 TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTT
4748582 TTT
900 TTT
* *
4748585 AAAATTTTTTCGGAATGAGTTTTGGCCCCAAACTTGGTAGACG-GCATCCTTGTATTTTTTTTGG
1 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG-ATCCTTGTATTTTTGTTGG
* * *
4748649 CATGCACAAAAAAATTCAGCTAAAAATTCGAAGTGTTCAATATTTTGTGACCATTTGAAAAAAGT
65 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
4748714 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
130 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
4748779 GGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
195 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
** * * * *
4748844 CCATCGCACATCATGTGCGCACACCCCCTAGCCCCCCCGATCACCGGAAACCCAATGTCGCTGGT
260 CCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGT
* *
4748909 CAGGTTCT-C--C---G----G-CGA---TGCTCCGACGAAGAAAAATGCGACACCAACACATGC
325 CAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGC
* * * * *
4748960 CCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCGGTCCGATCCTAGACTAGGAATGAACTCCG
390 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCG
* * *
4749025 TATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGTGTGCGGGTGCT
455 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCT
* ** * * * *
4749090 CAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCAGGACCCCCT-TACGTGCTACCG
520 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCG
** * * * *
4749154 ATCCGGCTGCCACAACCCTCAGTCTGGTCCT-ATCTTACACTGGAAATGAACTCCGTATGCCTAA
585 ATCCTACTGCCGCAACCCTCATTC-GGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * *
4749218 GCCAACTGACGAAAC--G-A-GCGGGCGGGCAGGTGGGCACTACGCCGGCCAGAGAGACGGGATG
648 GCCAACCGACGAAACGAGCAGGCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATG
* * * * *
4749279 CGCAAGCCGTGGATTGATAGGGTGGTTGGTTGGTTTAGGCACATCTTCATATTTTTGCTTGCCAA
713 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* *
4749344 TGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGACGTTTCATGGC
778 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * *
4749409 AAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTT
843 AAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTT
* * * *
4749469 AAAATTTTTTTGAAAGGGGTTTTGGCCCCAAACTTGGTAGACGTCATCCTTGTATTTTTGTTGGC
1 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
4749534 ATGCACAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
66 ATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
*
4749599 GTCCCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
130 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * *
4749664 GGGGGTGTGAGTTCTTGAGGTTTGATTAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACAC
195 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * * *
4749729 CCATCACACATCATATGCGCACACCCCACCCGACCCCCCCGATCG-CGGAATCCCAATTCCGCTG
260 CCATCGCACATCATGTGCGCACA-CCC-CCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCG
* * *
4749793 GTCAGGTTCTCCGACGATGCTCCGACGTTGGTGGCCCGGA-GAAGAAAAATGTGGCACCAACACA
323 GTCAGGTTCTCCGACGATGCTCCGACGATGGT-GCCCCGACGAAGAAAAATGCGGCACCAACACA
* * *
4749857 TGCCCGAGCCCAGCATGTGCTGCTGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACT
387 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* *
4749922 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGT
452 TCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGT
* * * * *
4749987 GCTCAGCTGGCCAGAGGGGCGGGATACGCAAACCGGGGATCGGTTGGGTCCCCTTCTGCGTGCTG
517 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
* * * * *
4750052 CCGATCCTACTGCCGCAACCCTTAGTCCGGTCTGATCATAGACT-GGATTGAACTTCGTATGCCT
582 CCGATCCTACTGCCGCAACCCTCA-TTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * *
4750116 AAGCCAACCGACGAAACGAGCAGAAGGGCGGGCGAGCGGGCAGGCACTACGCCGACCCGAGAGAC
646 AAGCCAACCGACGAAACGAGC---A-GGCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGAC
* * *
4750181 GGGATGCGCAAGCCGTGGATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACG
707 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
* *
4750246 TGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCATCACGTGAAGTTT
772 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * *
4750311 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTCTT
837 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTT
4750376 T
902 T
* * * *
4750377 AAAATTTTTTTGAAAGAAGTTTTGGCCCCAAACTTGGTATACGTGATCCTTGTATTTTTGTTGGC
1 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * *
4750442 ATGCACAAAAACATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTG
66 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
4750507 TCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAG
131 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
4750572 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
196 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * *
4750637 CATCACACATCATGTGCGTACACCCCCCGGCCCCCTCGATCACCGAAACCCACAATGCCGCCGGT
261 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCC-CAATGCCGCCGGT
* * *
4750702 CAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATACAGCACCAACACATGC
325 CAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGC
* * * *
4750767 CCGAGCCTAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAATTTCG
390 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCG
* * *
4750832 AATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCT
455 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCT
** * * *
4750897 CAGTTGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCA
520 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCG
* **
4750962 ATCCTACTACCATAACCCTCACTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
585 ATCCTACTGCCGCAACCCTCA-TTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* *
4751027 CCAACCGACGAAACAAGCAGGTGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
649 CCAACCGACGAAACGAGCAGGCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
* * * *
4751092 GCAAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATTTCTACGTGCCAAT
714 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* *
4751157 GCCATTTTTATTGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
779 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * *
4751222 AGACGACTCGTTTTCTATTTTTAACGATTTTCAAAACTTTTTATGGTTCGGGATTTTTT
844 AGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTT
* *
4751281 AAAATTTTTTCGGAATGAGTTTTGGCCCCAAACTTGGTAGACGTCATCCTTGTATTTTTGTTGGC
1 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
4751346 ATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
66 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * * *
4751411 CCCCCATTTCAGACACTTTAATGGCTTCTGGCAGCAAACCTGTAACATCTCAAATGCGCTTTAAG
131 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
4751476 GGGGTGTGAGTTCTCAAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
196 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
*
4751541 CATCGCACATCATGT--G--CA-------------CC--T-----------CAATGCCGTCGGTC
261 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTC
* **
4751576 AGGTTCTCTGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCC
326 AGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCC
* * * *
4751641 CGAGCCCAGCATGTGCTGTCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTACGT
391 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGT
* * *
4751706 ATGCTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTC
456 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTC
* ** * * *
4751771 AGTCGGCCAGAGGGGCGGGATGCGCAAGTTGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGA
521 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGA
** * * * *
4751836 TCCTACTATCACAACCCTCACTTTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCGTAAGC
586 TCCTACTGCCGCAACCCTCA-TTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
4751901 CAACCGATGAAACAAGCAGGCGGGCAGGC-GAGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
650 CAACCGACGAAACGAGCAGGCGGGCGGGCAG-GCGGGCACTACGTCGGCCAGAGAGACGGGATGC
* *
4751965 GCAAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
714 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* *
4752030 GCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCA
779 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * *
4752095 AGATGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTT
844 AGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTT
* * *
4752154 AAAATTTTTTCGGAAGGAGTTTTGGTCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGC
1 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* *
4752219 ATGCA-AAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCGTTTGAAAAAAGTG
66 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * *
4752283 TCCCCATTTTAGACCACTTTAATGGCTACTGGCGGCAAAACCTGTAAAATCTCAAATTCTCTTTA
131 TCCCCATTTCAGA-CACTTTAATGGCTACTGGCAGC-AAACCTGTAAAATCTCAAATGCTCTTTA
*
4752348 AAGGGGTGTGATGTTCTCCGAGGTTTGATGTACGGGATTAGAGGGGCCAATTATAAGGGCCAAGT
194 AGGGGGTGTGA-GTTCT-CGAGGTTTGATG-A-GGGA-TAG-GGGGCCAA-TATAAGGGCCAAGT
* * * *
4752413 ACCAGCACCCATCCACACATCATGTGCGTACACCCCCC-GCCCCGCGCGCAGTCACCGGAACCCC
252 ACCAGCACCCAT-CGCACATCATGTGCGCACACCCCCCGGCCCC-CCCG-A-TCGCCGGAACCCC
** ** * *
4752477 AATGTTGGCCGGTCAAGGATTCT-CGGTGAT-CTCCAACGATGGTGCCCCGACAAAGAAAAATTG
313 AATG-CCGCCGGTC-AGG-TTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA-TG
* * * * ** *
4752540 CAGCCATCCAACACATGCCCGAGCCTAGCAT-TGTTGCCGAAACCCCTCGGTCCAATACCCATCT
374 C-GGCA-CCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CCCTCGGTCCGGT-CCGATCT
*
4752604 TAGACTGGGAATGAAC-TCTGTATGCTTAGACTGACGGAAATGAACTCCATATGCCTAAGTCAA-
435 TAGACTGGGAATGAACTTC-GTATGCTTAGACTG--GG-AATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * *
4752667 CCACGAAATGAGCGTACTGGTGCTCAGTCGGTCAGAGGGGCGGGA-GCACAAGCC-GGGATCAGC
496 CCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGT
** * * * * *
4752730 CGGGTCCCCCCTCTGCACGCTTGTCGATCC-AGCTGCCACAACTCTCAATCTGGTCCGATCTTAG
561 CGGGT-CCCCCTCTGCGTGC-TGCCGATCCTA-CTGCCGCAACCCTCATTC-GGTCTGATCTTAG
* *
4752794 ACTGGGAATGAACTCCGTATGCCTAAAGCCAACCGATGAAAC--G-A-GCGGGCGGGCGGGCGGG
622 ACTGGGAATGAACTCCGTATGCCT-AAGCCAACCGACGAAACGAGCAGGCGGGCGGGCAGGCGGG
**
4752855 CACTACGTCGGCCAGAGAGACGGGATAAGCAAGCCGTTGGATC-AGTAGGGTGGTAGGTGGGTTT
686 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG-TGGATCGA-TAGGGTGGTAGGTGGGTTT
* * *
4752919 AGGCACATCTTCATATGTCTGCATGCCAATACCATTTTTATGGGCTTGTAAATTCATACAATGCT
749 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT-GGCTTGTAAATTCATACAATGGT
* * *
4752984 CCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTATT-T
813 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT-TTCG
*
4753048 AAACTTTTTACTGTTCGGGATTTTTT
877 AAACTTTTTACGGTTCGGGATTTTTT
* * * *
4753074 AAAATTTTTTCGAAAGGATTTTTGGCCCTAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGC
1 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * * *
4753139 ATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTATG-CACA----AAACAA-T
66 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC-CATTTGAAAAAAGT
** ** * * * * *
4753198 -TCAGC--TAAAAACA-ATTAATTGCTACTGGCAGCAAACCTATACAATCTCAAATGCTCTTTAA
130 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * * *
4753259 GGGGGTGTGAGTTCTTGAGGTTTAATGAGGTATACGGGGCCAATATAAGGGCCAAGTACCAGCAC
195 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* *
4753324 CCATCGCACATCATGTGCGCACACAACCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCT
260 CCATCGCACATCATGTGCGCACAC--CCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCG
* *
4753389 GTCAGG---T-------T-CTCCGACGATGGTGCCCTGACGAAGAAAAATACGGCACCAACACAT
323 GTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACAT
* * * *
4753443 GCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTC
388 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTT
* * * *
4753508 CGTATGCTTAGACTTGGAATGAACTCCGTGTGCCTAAGTCAA-CTACGAAACGAGCGTGTGGGTG
453 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTG
* * *
4753572 CTCAGCCGGCCAGA---G-GGGAT--------C--GG-T---T-GGGTACCCATCTGCGTGCTAC
518 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
* * ** * * * *
4753618 TGATCCTACTGCAGCAACCCTTGGTCCGATC-GAATCTTAGACAGGGAAATGAACTTCGTATGCC
583 CGATCCTACTGCCGCAACCC-TCATTCGGTCTG-ATCTTAGACTGGG-AATGAACTCCGTATGCC
* *
4753682 TAAGCCAACCGACGAAACGAGCAGGCGGGCAGGC-GGCCGGGCACTACGTCGACCAGAGAGACGG
645 TAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCAGG-CGGGCACTACGTCGGCCAGAGAGACGG
* * *
4753746 GTTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTG
709 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
* * *
4753811 CCAATGACATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTTAAGTTTCA
774 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * * *
4753876 TGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTT
839 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTT
* * * * * * * *
4753940 TAAATTTTTTTGAAAGGATTTTTGGCCCCAAACCTGGAAGACTTGATCCTTGTATTTTTTTTGGC
1 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
4754005 ATGCACAAAAAAACTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
66 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
4754070 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
131 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
4754135 GGGGTGTGAGTTCTCGAGGTTTGATGCGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
196 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * ** **
4754200 CATCGCACATCATGTGCGCACACCCCCGGGCCCCCCCGATTGTCGGAACCCCAATGCCATCACTC
261 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTC
* ** ** *
4754265 AGGATCTCCGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGACACCAACACATGCC
326 AGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCC
* * * * * *
4754330 CGAGCCCAGCATTTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTTCAT
391 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGT
* *
4754395 ATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTC
456 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTC
* * * * * * * *
4754460 AGTCAGCCAGAGGGGTGGGATGCGTAAGCCAGGGATCAGTCGGGTCCCCCTCTACGTGATGCCGA
521 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGA
* * * * *
4754525 TCCTGCTACTGCAACCCTCGA-TCTGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTCAA
586 TCCTACTGCCGCAACCCTC-ATTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT-AA
* * * * * * * **
4754589 -CCAACGGATGAAAC--G-A-GCGGAC--G--GGCGGGCACTACGCCCGCCAGAAAAACAAGATG
648 GCCAACCGACGAAACGAGCAGGCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATG
* * **
4754645 TGCAAGCCGTGGA-CGATAGGGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTCTGTGTGCCAA
713 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* *
4754709 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGATGTTTCATGGC
778 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * * * * *
4754774 AAGATGACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTGCAGTTCGAGATTTTTTT
843 AAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGA-TTTTTT
* * *
4754835 AAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGT
1 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * * *
4754900 ATGCACAATAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTA
66 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
4754965 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAATATCTCAAATGATCTTTAAG
131 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
4755030 GGGGTCTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACC
196 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * * * *
4755095 CATCGCACATCATATGCGCACACCCCCCCGACCCCCCAATCGTCGAAACCCCAATGCCGTCGGTC
261 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTC
* * * * ** *
4755160 AGGTTCTCCGACGATGCTTCGACAATGGTGCCTCGGCTTAGAAAAATACGGCACCAACACATGCC
326 AGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCC
* * * * * *
4755225 CGAGCCCAGCATGTACTACCACAACCCTCGGTCCGATCTGGTCTTAGACTGGGAATGAACTCCGT
391 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT---T
* * * *
4755290 ACGCCTAACTCAACCCACGGAACGAGCGTGCTTAGATTGGGAATAAACTTCGTATGCTTAGATTG
453 -CG------T--------------A---TGCTTAGACTGGGAATGAACTCCGTATGCCTA-A---
* ** * *** *** * ** * * *
4755355 GGAATGAACTCCGTATGCCTAA-GTCAACCCAC-GAAAC-AAG-CGTGCGGGTGCTCAGCCGGCC
490 -G--TCAAC-CC--A--CGAAACG--AGCGTGCGGGTGCTCAGCCG-GCCAGAG---GGGC----
* * *
4755416 AGAAGGGAGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCT--GTG-TG-CGATCCTGCTA
537 --------GGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTG
* ** * * *
4755477 CCGTAACCCTCGGTCTGGT-TCGATCTTAGACT-GGAATTAACTCTGTACGCCTAAGCCAACCGA
594 CCGCAACCCTCATTC-GGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * * * * *
4755540 CGAAATGAGCGGGCTGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAAATGGGATGCGCAAGCCG
657 CGAAACGAGCAGGCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
4755605 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGACATTTT
722 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * *
4755670 TATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTTAAGTTTCATGGCAAGATGACT
787 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * *
4755735 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTT
852 CGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTT
* * * * * *
4755786 TAAATTTTTTTGAAAGGATTTTTGGCCCCAAACTTGGTAGACTTGATCCTTGTATTTTTTTTGGC
1 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
4755851 ATGCACAAAAAAACTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
66 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
*
4755916 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAG
131 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * *
4755981 GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACT
196 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * *
4756046 CATCGCACATCATGTGCGCACACCCCCCTCGGCCCCTCCTATCGCCGGAACCCCAATGCCGTCGG
261 CATCGCACATCATGTGCGCACA-CCCCC-CGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGG
** * *
4756111 TCAGG---T-------T-CTCCGACGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAACATATG
324 TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATG
* * * * * * * *
4756165 CTCGAGCCCAGCATGTGCTGCTGTAACCCTCGATCTGGTCTGATCTTAGACTGGTAATGAACTCC
389 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTC
* *
4756230 ATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGTGCGGGTGC
454 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGC
* * * * * * * *
4756295 TTAGCTGGGCAGAGGGGCAGGATGCGCAAGCCAGGGATCGGTCAGGTCCCCCTCTGTGTGCTGCT
519 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCC
* * ** * **
4756360 GATCCTACTGCCACAACGCTCGGTCTGGTCCGATCTTAGACTGGGAAACAACTCCGTATGCCTAA
584 GATCCTACTGCCGCAACCCTCATTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * ** * *
4756425 GCCAACTGACGAAACGAGCGGGCAGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGATGGGATG
648 GCCAACCGACGAAACGAGCAGGCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATG
* * * *
4756490 CGCAAGCCGTGGATCAATAAGGTGGTAGGTGGGTTTAGGCACATCTTAACATTTCTGCATGCCAA
713 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* * *
4756555 TGCCATTTTTATGGCTTGCAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCGTGGC
778 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * *
4756620 AAGGCGACTTGTTTTCTATTTTTCATGATTTTCGAAAC-TTTTATGGTTCGGGA-TTTTT
843 AAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTT
* *
4756678 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTATATGTGATCCTTGTATTTTTGTTGGC
1 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* *
4756743 ATGCACAAAAAAATTCAGCTCAAAACTCGAAGTGTACTAGATTTTGTGACCATTTGAAAAAAGTG
66 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
4756808 TCCCCATTTTAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
131 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * * ** *
4756873 GGGGGGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGGCAATATAAGGGATAAGTACCTGCACC
196 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * * * *
4756938 CATCGCTCATCATGGGCGCACACCCCTCGG-CCCCTCGATCGCAGG-ACCCCAATGCCTCCGGTT
261 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTC
* * * * *
4757001 AGGTTCTCCGGCGATGCTCCGACGATAGTGCCCCGACGAAGAAAAATGTGGCACCAACAAATGCT
326 AGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCC
* * * * * ** * * * * *
4757066 TGAGCCCAGCATATGCTACCGCAACCCTCGGTTCGATCTAATCTTAAACTGAGAAAGAACTCCAT
391 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGT
* * * * *
4757131 ATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTTAACCCATGAAACGAGCTTGCGGGTGCTT
456 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTC
* * * * * * * *
4757196 AGCTGGCCAAAGGGGCAGGATGCACAAGCCGGGGATCGATCGGGT-CCCCTTTGTGTGCTACCGA
521 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGA
* * * * *
4757260 TCCTACTGCTGCAACCCTCAGTTTC-GTTTGATCTTAGACTGGTAATGAACCCCATATGCCTAAG
586 TCCTACTGCCGCAACCCTCA--TTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
*** * * *
4757324 CCAACCGACGAAACGAATGGGCGGGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGT
649 CCAACCGACGAAACGAGCAGGCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
* * *
4757389 GCAAGCCGTGGATAGATAGGGTTGTAGGTGGGTTTAGGCACAACTTCATATTTCTGCATGCCAAT
714 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
4757454 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
779 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * * *
4757519 AGACAACTCGTTTTATATTTTTCATGATTTTCAAAACTTTTTA-TGTTCCAGGATTTTTT
844 AGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTT-CGGGATTTTTT
* * *
4757578 AAAATTTTTTTGGAAGGTA-TTTTGGGCCCAAACTTGGTATACGTGATCCTTGTATTTTTGTTGG
1 AAAATTTTTTCGGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* *
4757642 CATGCACAAAAAAATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGGCCATTTGAAAAAAGT
65 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
4757707 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
130 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
4757772 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
195 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * *
4757837 CCATCGCACATCATGTGCGCACACCCCCCCGGCGCCCCCGATCGTCGAAACCCCAATGCCGCCGA
260 CCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGG
* ** **
4757902 TCAGGTTCACCGACGA-G-TCC-AGCGATGGTGCCCCGGTGAAGAAAAATGTAGCACCAACACAT
324 TCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACAT
* * * * * * *
4757964 GCCTGATCCTAGCATGTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTC
388 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTT
*
4758029 CGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTG
453 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTG
* * * ** * * **
4758094 CTCAGCCGGCCAGAAGAGCGGGATGCACAAGCTAGGGATCGGCCAGGTCCCCCTCTATGTGCTGC
518 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGC
** * * *
4758159 CGATCCTACTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACT-GGATTGAGCTCCGTATGCCTA
583 CGATCCTACTGCCGCAACCCTCATTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * * *
4758223 AGCCAACCGACGAAACGAGCGGGTGGGCGGACAGGCGAGCACTACGTGGGCCAGAAAGACGAGAT
647 AGCCAACCGACGAAACGAGCAGGCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGAT
* ** *
4758288 GCGCAAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAAACACATCTTCATAGTTCTGCATGCCA
712 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
*
4758353 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGCGAAGTTTCATGG
777 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* **
4758418 CAAGACAACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGGGGTTCGGGATTTTTT
842 CAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTT
* * * * * *
4758479 AAAATTTTTTTGGAAGGAGTTATGGCCCCAAA-TTGGTATACATGATCCTTGTATTTTTTTTGGA
1 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
4758543 ATGCAC-AAAAAATTCAGCTAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
66 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
4758607 TCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGATCTTTAAG
131 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
4758672 GGCGTGTGAGTTCTCGAGGTTTGATGTGGGATAGGGGGCCAATATAAGGG-CACAGTACCAGCAC
196 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA-AGTACCAGCAC
* *
4758736 CCATCGCACATCATGTGCGCACACCACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGTC
260 CCATCGCACATCATGTGCG--CA-CACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCC
* * ** * ** * *
4758801 GGTCAAGTTCTCCTACGATGCTCCGGTGATGGTGCCTCGGTGAAAAAAAATGCGGCACCAGCACA
322 GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACA
* * * **
4758866 TGCCCGACCCCAGCTTATGCTGTTGCAA----C---CC--T-CGATC-----C--GG--T---C-
387 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * * *
4758908 T-G-AT-CTTAGACTGGGAATGAACTCCGTATGCCCAAGTCAACCCACGAAATGAGTGTGCGGGC
452 TCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGT
* * * * * **
4758970 GCTCAACCGGCTAGAGGGGTGAGATGCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTATGTGCTG
517 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
* * * ** * *
4759035 CCGATCCTACTACTGTAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCTGTATGCCT
582 CCGATCCTACTGCCGCAACCCTCATTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * *
4759100 AAGCCAACC-ACTGAAACGAGCGGGCGGGCGGGCAGGGGGGCACTATGCCGGCCAGAGAGACAGG
646 AAGCCAACCGAC-GAAACGAGCAGGCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGG
* * * *
4759164 ATGCGGAAGTCGTGGATCGATACGGTGGTAGGTGGGTTTAGGCACATCTTCATATGTCTGCATGC
710 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* * **
4759229 TAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTAACTTAAGCCTTCACGTGAAGTTTCAT
775 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* *
4759294 GGCAAGATGACTCGTTTTCTATTTTTCATGA-TTTCTGAAACTTTTTACGATTC--G-------
840 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTC-GAAACTTTTTACGGTTCGGGATTTTTT
* * * *
4759348 AGAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACTTGGTCCTTGTATTTTTGTTGGC
1 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* *
4759413 ATGCACAAAAAAATTCAGCTACAAACTCGAAGTGTACAAGGTTTTGTGACCATTTGAAAAAAGTG
66 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * * *
4759478 TCCCCATTTCAAATACTTTAATGCCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
131 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
4759543 GGGGTGTGAGTTCTCGAGGTTTGATGAGGTAAAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
196 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * ** * *
4759608 CATCGCACATCATGTGCGCACA-ACCCTGGCCCCCCCGATCGCCAAAACCCCAATGCTGTCGGTC
261 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTC
* * *
4759672 AGGTTCTCCGACGA---T--G--G-T-GT-CCCAG-CAAAGAAAAATGCGGCACCAGCACATGCC
326 AGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCC
* * * *
4759726 CTAGCCCAGCATGTGCTACCACAA---------C---CC--TC--AGTCT-GG--T---C--CG-
391 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGT
* *
4759766 AT-CTT--A----GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
456 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTC
* * * * * *
4759824 AGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGTTCGGCCAGGTCCCCCTCTGTGTGCTGTCGA
521 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGA
* * * * * * * * *
4759889 TCCTGCTGCTGTAA-CCTGCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTTTGCC-AAG
586 TCCTACTGCCGCAACCCT-C-ATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA-
* * * * *
4759952 GCCAACCAACGAAACGAGCAGGCGGGCGGGCGGGCAGGCACTATGTCGGCTAGAGAGACGGGATG
648 GCCAACCGACGAAACGAGCAGGCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATG
* *
4760017 CGCAAGCCATGGATGGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
713 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
4760082 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
778 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * *
4760147 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTCCAGGATTTTTT
843 AAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTT
* * * *
4760207 AAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACCTGATCCCTGTAATTTTT-TTGG
1 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTGTTGG
* * * * *
4760271 TATGCACAAAAAAATTCAACTAAAAAATCGAAGTGTACAAGATTTTCTGACCAATTGAAAAAAGT
65 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
*
4760336 GTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
130 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* ** * *
4760401 GGGGGTGTGAGTTCTCGAGGTTTGATGACGGATAGGGGGAAAATATAGGGGCCAAGTTCCAG-AT
195 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-
* * * ** *
4760465 ACCATCACACATCATGTGCGCACAACCCCCCGGCCTCCCCGATCATCGGAACCCCAATGCCACCG
259 CCCATCGCACATCATGTGCGCAC-ACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCG
* *
4760530 GTCAGGTTCTCCGACGCTGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACTCAT
323 GTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACAT
* * ** * * *
4760595 GCCCGAGCCTAGCATGTGCTACCATAACCCTCGATTCGGTCCGATCTTAGACTGGGAATGAACTC
388 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTT
* * * * *
4760660 CGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCTGGTG
453 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTG
* * * ** * * ** * *
4760725 CTCAACCAGCCAGAGGGTCGGGAT-CGACAAGTTGAGGATCGGCCAAGTCCCCCACTACGTGCTG
518 CTCAGCCGGCCAGAGGGGCGGGATGCG-CAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
* * ** * * * * * *
4760789 CTGATCCTGCTGCTACAACCTTCGATCCGATCCGATCTTAGACTGGTAATAAACTCCGTATGCCT
582 CCGATCCTACTGCCGCAACCCTC-ATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
*
4760854 AAGCCAACCGACGAAAC--G-A-----GC--G--GGCGGGCACTACGTCGGCTAGAGAGACGGGA
646 AAGCCAACCGACGAAACGAGCAGGCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGA
* * * *
4760907 AGTGCAACCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG--TGCA
711 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG--
*
4760970 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCA
774 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * * **
4761035 TGGCAAGATGACTCATTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTTTGGATTTTTT
839 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTT
** * *
4761099 AAAATTTTTTCAAAAGGCGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGCC
1 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* *
4761164 ATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGATAAAAGTG
66 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
*
4761229 TCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
131 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
** *
4761294 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCACTTACCAGTACC
196 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* *
4761359 CATCGCACATCATGTGCGCACA-CCCCCGG-CCCCCCGATCACCGGAACCCCAATGCCACCGGTC
261 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTC
** * ** * *
4761422 AGGTTCTCCGGTGATGGTCCGACGACAGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCC
326 AGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCC
** * * * * *
4761487 CGA-CCCAGCATGTGCCACTGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAA-GTCTG
391 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTC-G
* * *
4761550 TATGCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCT
455 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCT
* * * * *
4761615 CAGCCAGCCAGAGGGGAGAGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTATGCGTGCTGCCG
520 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCG
* * * * *
4761680 ATCCTACTACTGCAACCCTCAATCCGGTCTGATCATAGACTGGGAATGAACTCCATATGCCTAAG
585 ATCCTACTGCCGCAACCCTC-ATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
4761745 CCAACCGACGAAACGAGCGGGCGGGCGGG-AGGGCGGCCGCGCACTACATCGGCTAGAGAGATGG
649 CCAACCGACGAAACGAGCAGGCGGGCGGGCA-GGC-G--G-GCACTACGTCGGCCAGAGAGACGG
*
4761809 GATGCGCAA---G-GGATCGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
709 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
** * *
4761870 AAAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTTACGTGAAGTTTCA
774 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * *
4761935 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGGGATCTTTT
839 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTT
* * ***
4761999 AAAATTTTTTCGGTAGGATTTTTGAATCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
1 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* *
4762064 ATGCACAAAAGAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
66 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * * *
4762129 TCCCCATTTCGGACACTTTAATGGCTACTGGAAGCAAACCTATAAAATCTCAAATACTCTTTAAG
131 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
4762194 GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACC
196 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * *
4762259 CATCGCACATCTTGTGCGCACATCCCCTCGACCCCCCCGATTGCCGGAACCCTAATGTCC-CCGG
261 CATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATG-CCGCCGG
* *
4762323 TCAGGTTCTCCGACGATGCT-C--C------G----G-C---G----ATGCAGCACCAGCACATG
324 TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATG
* *
4762367 CTCGAGCCTAGCATGTGCTGCCGCAACCCT---T---G---G-TC-----C--GG--T---C--C
389 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTC
* * * **
4762408 G-AT-CTTAGACTGGGAATGAATTCCGTATGCCTAAGTCAAACCACGAAACGAACGTGCGGACGC
454 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGC
* * * ** * *
4762471 TCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGCATCGACCGGGTCCCGCTCTGCGTGCTACC
519 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCC
* * * * * * * *
4762536 GATCCTGCTACTGTAACCTTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAA
584 GATCCTACTGCCGCAACCCTC-ATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * ** *
4762601 GCCAACCGACGAAACGAG-AGGGCGGGCAGGCGGGCGGGCGGGAACTACACCGACCAGAGAGACG
648 GCCAACCGACGAAACGAGCA-GGC--G--GGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACG
* ***
4762665 TGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGT
708 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
4762730 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
773 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * * * **
4762795 ATGGCAAGATGACTCATTTTCTATTTTTCACGACTTTT-GAAACATTTTGCGGTTCCAGATTTTT
838 ATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTCGAAACTTTTTACGGTTCGGGATTTTT
4762859 T
902 T
* ** *
4762860 AAAA-TTTTTCAGAAGGAGTTTTGGCCCCAAAGATGGTAAACGTTG-TCCTTGTATTTTTGTTGG
1 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG-TGATCCTTGTATTTTTGTTGG
* * *
4762923 CATGCACAAAAGAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGATAAAAGT
65 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * *
4762988 GTCCCCATTACAGACACTTTAACGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
130 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * * *
4763053 AGGGGTGTGAGCTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCTC
195 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * * ** *
4763118 CCATCGTACATCATGTGCACACACCCCCCGG-CTCCCCGATTGTCGGAACTTCAATGTCG-CGGT
260 CCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGT
*
4763181 CA---TCTCC-A--ATGCTCCG-TGAT-GTG-CCCGCACGAAGAAAAAATGCGGCACCAACACAT
325 CAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG-ACGAAG-AAAAATGCGGCACCAACACAT
* * * *
4763237 GTCCGAG-CC--CATGTGCTGCCG-------C-GTCC---CTGA--TT-GACTGAGAATGATA-A
388 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA-ACT
* * * *
4763284 T--TA-GCCTAGACTAGGAATGAACT-CGTATGCCTAAGTCAACCCATCG-AACGAGCGT-CAGC
452 TCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CGAAACGAGCGTGCGGG
* * * * * * *
4763343 CGCTCTGCCTCCGCCCGA-GGGCGGGATGC-TAAG-CGGGGATC-ATC-GGT-CCCCTC-ACGTG
516 TGCTCAG-C-CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTG
* * * * *
4763401 CT-CCGATCCTGCTACCCCAA-TCTCATT-GG-CCGATCTTAGACT-GGAATGAACTCCGTATGC
579 CTGCCGATCCTACTGCCGCAACCCTCATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
4763461 CT-AGCCAACCGACGAAACGAGCGAGGCGGGCAGGCGGCAGTG-GGCCACTACGCCGACCAGTAG
644 CTAAGCCAACCGACGAAACGAGC-AGGCGGGC--G-GGCAG-GCGGGCACTACGTCGGCCAG-AG
4763524 AGAC-GGATGCGCAAGCCGTGGATCGATA-GGT-GTAGGT-GGTTTAGGCACATCTTCATATTTC
703 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * *
4763585 TACCTGCCAATGCCATTTTTATGGCTTGTAAATTTCATAC-ATGGCCCCTTAAGCCTTCACGTGA
768 TGCATGCCAATGCCATTTTTATGGCTTGTAAA-TTCATACAATGGTCCCTTAAGCCTTCACGTGA
*
4763649 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGA
832 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGA
4763714 TTTTCTT
897 TTTT-TT
* * * *
4763721 -TAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGC
1 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * * *
4763785 ATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAGCATATAAAAAAAGTG
66 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
*
4763850 TCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
131 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * *
4763915 GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTGCCAGCACC
196 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * **
4763980 CATCGCACATCATGTGTC-CACACCCCCCCTCGACCCCCCCGGTCACCGGAACCCCAATGTTGCC
261 CATCGCACATCATGTG-CGCACA--CCCCC-CGGCCCCCCCGATCGCCGGAACCCCAATGCCGCC
* * *
4764044 GGTCAGG-T-T-------T--TCCGATGATGGTGCCTCGGCGAAGAAAAATGCGGCACCAACACA
322 GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACA
** * ** *
4764098 TGCCCGAGCCCAGCATGTGCTATCGCAACCCTCGGTCCGGTCTGATCTTAGACTAAGAATGAATT
387 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * * *
4764163 TCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAATGCGTGTGCGGGT
452 TCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGT
* * * * * *
4764228 GCTCAGCCGGCCAGTGGGGCGGGATGCGCAAGGCAGGGATTGGTCAGGTCCCCCTCTACGTGCTG
517 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTG
* * * * **
4764293 TCGATCCTGCTGCCACAACCCTCAATTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCT
582 CCGATCCTACTGCCGCAACCCTC-ATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
*
4764358 AAGCCAACCGACGAAAC--G-A-GCGGGC--G--GGCGGGCACTACGCCGGCCAGAGAGACGGGA
646 AAGCCAACCGACGAAACGAGCAGGCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGA
* * * **
4764415 TGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCCTAAC
711 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
*
4764480 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATG
776 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* *
4764545 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAGGGTTCGGGGATTTTTT
841 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTC-GGGATTTTTT
* * * * * *
4764608 AAAATTTTTTCAGAAGGAGGTTTGGCCCCAAAATTTGTAGACATGATCCCTGTATTTTTGTTGGC
1 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * *
4764673 ATTCACAAAAAAATTCATCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
66 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
*
4764738 TCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
131 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
4764803 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
196 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
4764834 ATAAACTCCG
Statistics
Matches: 15664, Mismatches: 1820, Indels: 1184
0.84 0.10 0.06
Matches are distributed among these distances:
849 5 0.00
850 364 0.02
851 12 0.00
852 4 0.00
853 1 0.00
854 8 0.00
855 1 0.00
856 52 0.00
857 222 0.01
858 27 0.00
859 259 0.02
860 398 0.03
861 484 0.03
862 42 0.00
863 80 0.01
864 84 0.01
865 75 0.00
866 222 0.01
867 117 0.01
868 65 0.00
869 47 0.00
870 48 0.00
871 223 0.01
872 126 0.01
873 678 0.04
874 48 0.00
875 143 0.01
876 54 0.00
877 180 0.01
878 236 0.02
879 20 0.00
880 10 0.00
881 30 0.00
882 56 0.00
883 177 0.01
884 409 0.03
885 242 0.02
886 86 0.01
887 262 0.02
888 670 0.04
889 156 0.01
890 60 0.00
891 26 0.00
892 723 0.05
893 54 0.00
894 404 0.03
895 463 0.03
896 28 0.00
897 6 0.00
898 283 0.02
899 424 0.03
900 1029 0.07
901 607 0.04
902 246 0.02
903 592 0.04
904 844 0.05
905 224 0.01
906 30 0.00
907 492 0.03
908 379 0.02
909 58 0.00
910 50 0.00
911 32 0.00
912 54 0.00
913 49 0.00
914 22 0.00
915 83 0.01
916 244 0.02
917 188 0.01
918 204 0.01
919 137 0.01
920 259 0.02
921 144 0.01
922 68 0.00
923 1 0.00
927 1 0.00
929 4 0.00
930 2 0.00
932 3 0.00
933 7 0.00
934 4 0.00
935 3 0.00
936 1 0.00
938 1 0.00
942 92 0.01
943 30 0.00
944 36 0.00
945 3 0.00
946 3 0.00
947 4 0.00
948 33 0.00
949 1 0.00
950 1 0.00
951 307 0.02
952 163 0.01
953 35 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (902 bp):
AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTC
AGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCC
CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGT
ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTC
AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGA
TCCTACTGCCGCAACCCTCATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
AACCGACGAAACGAGCAGGCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTT
Found at i:4751734 original size:26 final size:26
Alignment explanation
Indices: 4751683--4751735 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4751673 CTGGTCCGAT
*
4751683 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACATATG
*
4751709 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTACATATG
4751735 C
1 C
4751736 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:4752656 original size:29 final size:26
Alignment explanation
Indices: 4752602--4752657 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 26
4752592 CAATACCCAT
**
4752602 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
4752628 CTTAGACTGACGGAAATGAACTCCATATG
1 CTTAGACTG--GG-AATGAACTCCATATG
4752657 C
1 C
4752658 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 9 0.36
28 2 0.08
29 14 0.56
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4755354 original size:26 final size:26
Alignment explanation
Indices: 4755318--4755372 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
4755308 GGAACGAGCG
*
4755318 TGCTTAGATTGGGAATAAACTTCGTA
1 TGCTTAGATTGGGAATAAACTCCGTA
*
4755344 TGCTTAGATTGGGAATGAACTCCGTA
1 TGCTTAGATTGGGAATAAACTCCGTA
4755370 TGC
1 TGC
4755373 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (26 bp):
TGCTTAGATTGGGAATAAACTCCGTA
Found at i:4756249 original size:26 final size:26
Alignment explanation
Indices: 4756209--4756261 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4756199 CTGGTCTGAT
*
4756209 CTTAGACTGGTAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4756235 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
4756261 C
1 C
4756262 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4758038 original size:26 final size:26
Alignment explanation
Indices: 4758009--4758061 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4757999 CCGGTCTGAT
*
4758009 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
*
4758035 CTTAGACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
4758061 C
1 C
4758062 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:4760669 original size:26 final size:26
Alignment explanation
Indices: 4760640--4760692 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4760630 TCGGTCCGAT
*
4760640 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
4760666 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4760692 C
1 C
4760693 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4761126 original size:892 final size:886
Alignment explanation
Indices: 4759772--4764833 Score: 5614
Period size: 892 Copynumber: 5.7 Consensus size: 886
4759762 TCCGATCTTA
*
4759772 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* ** * * *
4759837 GGCGGGATGCGCAAGTCGGGGTTCGGCCAGGTCCCCCTCTGTGTGCTGTCGATCCTGCTGCTGTA
66 GGCGGGATGCGCAAGTCGGGGATCGGCCAGGTCCCCCTCTACGTGCTGCCGATCCTGCTACTGCA
* * * * * *
4759902 ACCTGCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTTTGCC-AAGGCCAACCAACGAAA
131 ACCTTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA-GCCAACCGACGAAA
* *
4759966 CGAGCAGGCGGGCGGGCGGGCAGGCACTATGTCGGCTAGAGAGACGGGATGCGCAAGCCATGGAT
195 C--G-A----GGCGGGC--G--GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGAT
*
4760031 GGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC--TGCATGCCAATGCCATTTTTAT
249 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGCA--CCAATGCCATTTTTAT
4760094 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
312 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* *
4760159 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTCCAGGATTTTTTAAAATTTTTTC-GAAAG
377 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG-AAG
* * * *
4760223 GATTTTTGGCCCCAAACTTGGTAGACCTGATCCCTGTAATTTTT-TTGGTATGCACAAAAAAATT
441 GAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAAATT
* * * *
4760287 CAACTAAAAAATCGAAGTGTACAAGATTTTCTGACCAATTGAAAAAAGTGTCCCCATTTCAGACA
505 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
4760352 CTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
570 CTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * * * * *
4760417 GAGGTTTGATGACGGATAGGGGGAAAATATAGGGGCCAAGTTCCAGATACCATCACACATCATGT
635 GAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACCAGATCCCATCGCACATCATGT
* * *
4760482 GCGCACAACCCCCCGGCCTCCCCGATCATCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGC
700 GCGCACAACCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCC-CCGGTCAGGTTCTCCGA-GA
* *
4760547 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACTCATGCCCGAGCCTAGCATGT
763 TGCTCCGACGAT-GTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGT
** *
4760612 GCTACCATAACCCTCGATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAG
827 GCTACCGCAACCCTCGATCCGGTCCGATCTTAGACT-GGAATGAA-T--GTATGCTTAGACTAG
* * * * * * *
4760676 GAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCTGGTGCTCAACCAGCCAGAGG
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * * * *
4760741 GTCGGGAT-CGACAAGTTGAGGATCGGCCAAGTCCCCCACTACGTGCTGCTGATCCTGCTGCTAC
66 GGCGGGATGCG-CAAGTCGGGGATCGGCCAGGTCCCCCTCTACGTGCTGCCGATCCTGCTACTGC
* * *
4760805 AACCTTCGATCCGATCCGATCTTAGACTGGTAATAAACTCCGTATGCCTAAGCCAACCGACGAAA
130 AACCTTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * *
4760870 CGA-GCGGGCGGGCACTACGTCGGCTAGAGAGACGGGAAGTGCAACCCATGGATCGATAGGGTGG
195 CGAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGG
4760934 TAGGTGGGTTTAGGCACATCTTCATATTTCTGTGCACCAATGCCATTTTTATGGCTTGTAAATTC
260 TAGGTGGGTTTAGGCACATCTTCATATTTCTGTGCACCAATGCCATTTTTATGGCTTGTAAATTC
* * *
4760999 ATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCA
325 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* ** * *
4761064 TAATTTTTGAAACTTTTTACGGTTTTGGATTTTTTAAAATTTTTTCAAAAGGCGTTTTGGCCCCA
390 TGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
* * *
4761129 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGCCATGCATAAAAAAATTCAGCTAAAAACTCGA
455 AACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
*
4761194 AGTGTACAAGATTTTGTGACCATTTGATAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
520 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT-
4761259 GA-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
584 GACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* **
4761323 GATAGGGGGCCAATATAAGGGCCACTTACCAG-TACCCATCGCACATCATGTGCGCAC-A-CCCC
649 GATAGGGGGACAATATAAGGGCCAAGTACCAGAT-CCCATCGCACATCATGTGCGCACAACCCCC
* * *
4761385 CGG-CCCCCCGATCACCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGGTCCGACGACA
713 CGGCCCCCCCGATCACCGGAACCCCAATGCC-CCGGTCAGGTTCTCC-GAGATGCTCCGACGA-T
* * * *
4761449 GTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGA-CCCAGCATGTGCCACTGCAACCC
775 GTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACCC
* * *
4761513 TC-AGTCCAGTCTGATCTTAGACTGGGAATGAAGTCTGTATGCTTAGACTGG
840 TCGA-TCCGGTCCGATCTTAGACT-GGAATGAA---TGTATGCTTAGACTAG
* * *
4761564 GAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAGCCAGAGG
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * * *
4761629 GGAGAGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTATGCGTGCTGCCGATCCTACTACTGCA
66 GGCGGGATGCGCAAGTCGGGGATCGGCCAGGTCCCCCTCTACGTGCTGCCGATCCTGCTACTGCA
* * * * *
4761694 ACCCTCAATCCGGTCTGATCATAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAAC
131 ACCTTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * *
4761759 GAGCGGGCGGGCGGGAGGGCGGCCGCGCACTACATCGGCTAGAGAGATGGGATGCGCAAG----G
196 GA-------GGC----GGGC-G--G-GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATG
* *
4761820 GATCGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG-A-AAATGCCATTTT
246 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG--TGCACCAATGCCATTTT
* *
4761883 TATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGACT
309 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** * * * *
4761948 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGGGATCTTTTAAAATTTTTTCGGT
374 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGA
* *** * *
4762013 AGGATTTTTGAATCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAGAAT
439 AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
4762078 TCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGAC
504 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
4762143 ACTTTAATGGCTACTGGA-AGCAAACCTATAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTC
569 ACTTTAATGGCTACT-GACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
4762207 TCAAGGTTTGATGAGGGATA-GGGGACCAATATAAGGGCCAAGTACCAGCA-CCCATCGCACATC
633 TCGAGGTTTGATGAGGGATAGGGGGA-CAATATAAGGGCCAAGTACCAG-ATCCCATCGCACATC
* * * * ** *
4762270 TTGTGCGCACATCCCCTCGACCCCCCCGATTGCCGGAACCCTAATGTCCCCGGTCAGGTTCTCCG
696 ATGTGCGCACAACCCCCCGGCCCCCCCGATCACCGGAACCCCAATG-CCCCGGTCAGGTTCTCCG
* * * *
4762335 ACGATGCT-C--C-----G----G-C---G----ATGCAGCACCAGCACATGCTCGAGCCTAGCA
760 A-GATGCTCCGACGATGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCA
* * *
4762380 TGTGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGAC-----TG---G---G---A-A-T--
824 TGTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGAATGAATGTATGCTTAGACTAG
* * * *
4762425 GAAT----TCCGTATGCCTAAGTCAAACCACGAAACGAACGTGCGGACGCTCAGTCGGCCAGAGG
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * * * * *
4762486 GGCAGGATGCGCAAGCCGGGCATCGACCGGGTCCCGCTCTGCGTGCTACCGATCCTGCTACTGTA
66 GGCGGGATGCGCAAGTCGGGGATCGGCCAGGTCCCCCTCTACGTGCTGCCGATCCTGCTACTGCA
* * *
4762551 ACCTTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
131 ACCTTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-
** * * *
4762616 GAGAGGGCGGGCAGGCGGGCGGGCGGGAACTACACCGACCAGAGAGACGTGATGCGCAAGCCGTG
193 -A-A---C--G-AGGCGGGCGGGC----ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATG
* **
4762681 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTA
246 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGCACCAATGCCATTTTTA
* *
4762746 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCA
311 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * * **
4762811 TTTTCTATTTTTCACGACTTTTGAAACATTTTGCGGTTCCAGATTTTTTAAAA-TTTTTCAGAAG
376 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAG
** * * *
4762875 GAGTTTTGGCCCCAAAGATGGTAAACGTTG-TCCTTGTATTTTTGTTGGCATGCACAAAAGAATT
441 GAGTTTTGGCCCCAAACTTGGTAGAC-ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * *
4762939 CAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGATAAAAGTGTCCCCATTACAGACA
505 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* ** * * *
4763004 CTTTAACGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGCTCTT
570 CTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
4763069 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCTCCCATCGTACATCATGT
635 GAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACCAGATCCCATCGCACATCATGT
* * *** ** * *
4763134 GCACAC-ACCCCCCGG-CTCCCCGATTGTCGGAACTTCAATGTCGCGGTCA---TCTCC-A-ATG
700 GCGCACAACCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCCCGGTCAGGTTCTCCGAGATG
* *
4763192 CTCCG-TGATGTG-CCCGCACGAAGAAAAAATGCGGCACCAACACATGTCCGAG-CC--CATGTG
765 CTCCGACGATGTGCCCCG-ACGAAG-AAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTG
* ** * * *
4763252 CTGCCGCGTCCCT-GAT----T--GA-CTGAGAAT-G-AT-AAT-TA-GCCTAGACTAG
828 CTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGAATGAATGTATGCTTAGACTAG
* * * * *
4763298 GAATGAACT-CGTATGCCTAAGTCAACCCATCG-AACGAGCGT-CAGCCGCTCTGCCTCCGCCCG
1 GAATGAACTCCGTATGCCTAAGTCAACCCA-CGAAACGAGCGTGCGGGCGCTCAG-C-CGGCCAG
* ** *
4763360 A-GGGCGGGATGC-TAAG-CGGGGATC-ATC-GGT-CCCCTC-ACGTGCT-CCGATCCTGCTACC
63 AGGGGCGGGATGCGCAAGTCGGGGATCGGCCAGGTCCCCCTCTACGTGCTGCCGATCCTGCTACT
* * *
4763417 CCAATC-TC-AT-TGG-CCGATCTTAGACT-GGAATGAACTCCGTATGCCT-AGCCAACCGACGA
128 GCAACCTTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-
* *
4763476 AACGAGCGAGGCGGGCAGGCGGCAGTGGGCCACTACGCCGACCAGTAGAGAC-GGATGCGCAAGC
192 AA--A-CGA----GGC--G-GGC---GGG-CACTACGTCGGCCAG-AGAGACGGGATGCGCAAGC
* *
4763540 CGTGGATCGATA-GGT-GTAGGT-GGTTTAGGCACATCTTCATATTTCTACCTG--CCAATGCCA
242 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT--GTGCACCAATGCCA
*
4763600 TTTTTATGGCTTGTAAATTTCATAC-ATGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
305 TTTTTATGGCTTGTAAA-TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
** *
4763664 CGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTCTT-TAATTTT
369 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTT-TTAAAATTTT
** *
4763728 TTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
433 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
* * * *
4763793 AAATATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAGCATATAAAAAAAGTGTCCCCATT
498 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
4763858 TTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
563 TCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
4763923 AGTTCTCAAGGTTTGATGAGGGATA-GGGGACCAATATAAGGGCCAAGTGCCAGCA-CCCATCGC
628 AGTTCTCGAGGTTTGATGAGGGATAGGGGGA-CAATATAAGGGCCAAGTACCAG-ATCCCATCGC
* * * **
4763986 ACATCATGTGTC-CACACCCCCCCTCGACCCCCCCGGTCACCGGAACCCCAATGTTGCCGGTCAG
691 ACATCATGTG-CGCACA-ACCCCC-CGGCCCCCCCGATCACCGGAACCCCAATG-CCCCGGTCAG
* * * *
4764050 GTTTTCC--GA---T--GATG--GTGCCTCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAG
752 GTTCTCCGAGATGCTCCGACGATGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAG
* * * *
4764106 CCCAGCATGTGCTATCGCAACCCTCGGTCCGGTCTGATCTTAGACTAAGAATGAATTTCGTATGC
817 CCCAGCATGTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACT-GGAATGAA--T-GTATGC
*
4764171 TTAGACTGG
878 TTAGACTAG
* * * * * *
4764180 GAATGAACTCCGTATGCCTAAGTCATCCCACGAAATGCGTGTGCGGGTGCTCAGCCGGCCAGTGG
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * * **
4764245 GGCGGGATGCGCAAGGCAGGGATTGGTCAGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCACA
66 GGCGGGATGCGCAAGTCGGGGATCGGCCAGGTCCCCCTCTACGTGCTGCCGATCCTGCTACTGCA
* * ** *
4764310 ACCCTCAATTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
131 ACCTTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * *
4764375 GAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGT
196 GA---GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGT
* * *
4764440 GGTAGGTGGGTTTAGGTACATCTTCATATTTCTG-CCTAACAATGCCATTTTTATGGCTTGTAAA
258 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGC-ACCAATGCCATTTTTATGGCTTGTAAA
*
4764504 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTT
322 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* *
4764569 TCATGATTTTTGAAACTTTTTAGGGTTCGGGGATTTTTTAAAATTTTTTCAGAAGGAGGTTTGGC
387 TCATGATTTTTGAAACTTTTTACGGTTC-GGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGC
* * * * * *
4764634 CCCAAAATTTGTAGACATGATCCCTGTATTTTTGTTGGCATTCACAAAAAAATTCATCAAAAAAC
451 CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
4764699 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCT
516 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
4764764 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
581 ACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
4764829 AGGGA
646 AGGGA
4764834 ATAAACTCCG
Statistics
Matches: 3569, Mismatches: 400, Indels: 394
0.82 0.09 0.09
Matches are distributed among these distances:
851 5 0.00
852 1 0.00
853 3 0.00
854 6 0.00
856 2 0.00
857 197 0.06
858 21 0.01
859 12 0.00
860 387 0.11
861 436 0.12
862 37 0.01
863 70 0.02
864 33 0.01
865 49 0.01
866 17 0.00
867 5 0.00
868 21 0.01
869 22 0.01
870 9 0.00
871 27 0.01
872 5 0.00
873 12 0.00
874 7 0.00
875 12 0.00
876 39 0.01
877 13 0.00
879 1 0.00
881 2 0.00
882 45 0.01
883 79 0.02
884 47 0.01
885 12 0.00
886 16 0.00
887 135 0.04
888 447 0.13
889 101 0.03
890 27 0.01
891 16 0.00
892 452 0.13
893 6 0.00
894 18 0.01
895 22 0.01
896 20 0.01
899 4 0.00
900 420 0.12
901 3 0.00
902 10 0.00
903 45 0.01
904 191 0.05
905 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (886 bp):
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
GGCGGGATGCGCAAGTCGGGGATCGGCCAGGTCCCCCTCTACGTGCTGCCGATCCTGCTACTGCA
ACCTTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
GAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGT
AGGTGGGTTTAGGCACATCTTCATATTTCTGTGCACCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
ACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGA
CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
TAGGGGGACAATATAAGGGCCAAGTACCAGATCCCATCGCACATCATGTGCGCACAACCCCCCGG
CCCCCCCGATCACCGGAACCCCAATGCCCCGGTCAGGTTCTCCGAGATGCTCCGACGATGTGCCC
CGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATC
CGGTCCGATCTTAGACTGGAATGAATGTATGCTTAGACTAG
Found at i:4761559 original size:26 final size:26
Alignment explanation
Indices: 4761520--4761580 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
4761510 CCCTCAGTCC
4761520 AGTCTG-AT-CTTAGACTGGGAATGA
1 AGTCTGTATGCTTAGACTGGGAATGA
4761544 AGTCTGTATGCTTAGACTGGGAATGA
1 AGTCTGTATGCTTAGACTGGGAATGA
* *
4761570 ACTCCGTATGC
1 AGTCTGTATGC
4761581 ATAAGTCAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
24 6 0.18
25 2 0.06
26 25 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (26 bp):
AGTCTGTATGCTTAGACTGGGAATGA
Done.