Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 35 of 129
Found at i:4764183 original size:26 final size:26
Alignment explanation
Indices: 4764144--4764196 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
4764134 CCGGTCTGAT
* *
4764144 CTTAGACTAAGAATGAATTTCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
**
4764170 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
4764196 C
1 C
4764197 CTAAGTCATC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCGTATG
Found at i:4765489 original size:664 final size:670
Alignment explanation
Indices: 4764164--4765497 Score: 1889
Period size: 664 Copynumber: 2.0 Consensus size: 670
4764154 GAATGAATTT
* * * * *
4764164 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAATGCGTGTGCGGGTG
1 CGTATGCATAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTG
* * * * * * * *
4764229 CTCAGCCGGCCAGTGGGGCGGGATGCGCAAGGCAGGGATTGGTCAGGTCCCCCTCTACGTGCTGT
66 CTCAGCCAGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGCTCAGGTCCCCCTCTACATACTGT
** *
4764294 CGATCCTGCTGCCACAACCCTCAATTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTA
131 CGATCCTGCTGCCACAACCCTCAATCCGATCCAATCTTAGACTGGGAATGAACTCCG-A---CTA
* * * * *
4764359 AGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAGC
192 A--CAA-C-ACGAAACGAGCGGGCGGACGAGCACTACGCCAGCCAGAAAGACGGGATGAGTAAGC
** * *
4764424 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCCTAACAATGCCATT
253 CGTGGATCGATAGGGTGGTAGGAAGGTTTAGGAACATCTTCATATTTCTACCTAACAATGCCATT
*
4764489 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGA
318 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTAATGGCAAGACGA
* * * *
4764554 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAGGGTTCGGGGATTTTTTAAAATTTTTTC
383 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGAATTTTTTAAAATTTTTTC
* *
4764619 AGAAGGAGGTTTGGCCCCAAAATTTGTAGACATGATCCCTGTATTTTTGTTGGCATTCACAAAAA
448 AGAAGGAGGTTTGGCCCCAAAATTGGTAGACATGATCCCTGTATTTTTGTTGGCATGCACAAAAA
*
4764684 AATTCATCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
513 AATTCATCAAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
4764749 AACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
578 AACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGT
*
4764814 TCTCGAGGTTTGATGAGGGAATAAACTC
643 TCTCAAGGTTTGATGAGGGAATAAACTC
*
4764842 CGTATGCATAGACTGGGAATGAACTCCGTATGCCTAAGTCAACGCACGAAACGAGCGTGCGGGTG
1 CGTATGCATAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTG
* * * * *
4764907 CTCAGTCAGCCAGAGGGGCAGGATGCGCAAGCC-GAGGATCGACT-GGGTCCTCCTGTGCATACT
66 CTCAGCCAGCCAGAGGGGCAGGATGCGCAAGCCAG-GGATCG-CTCAGGTCCCCCTCTACATACT
* *
4764970 GTCGATCCTGCTGCCGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCC-A-TAA-
129 GTCGATCCTGCTGCCACAACCCTCAATCCGATCCAATCTTAGACTGGGAATGAACTCCGACTAAC
* *
4765032 AA-ACG-AGCG-GTCGGGCGGACGAGCACTACGCCAGCCAGAAAGACGGGATGAGTAAGCTGTGG
194 AACACGAAACGAG-CGGGCGGACGAGCACTACGCCAGCCAGAAAGACGGGATGAGTAAGCCGTGG
** **
4765094 ATCGATAGGGTGGTAGGAAGGTTTAGGAACATCTTCATATTTCTATGTGCCAATGCCATTTTTAT
258 ATCGATAGGGTGGTAGGAAGGTTTAGGAACATCTTCATATTTCTACCTAACAATGCCATTTTTAT
*
4765159 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGT
323 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTAATGGCAAGACGACTCGT
* * * *
4765224 TTTCTTTTTTTCACGGTTTTTGAAACTTTTTACGGTTC-ATAATTTTTTAAAATATTTTT-GGAA
388 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGAATTTTTTAAAAT-TTTTTCAGAA
* * * * * * * *
4765287 GGAGTTTTGGCCCCAGACTTGGTAGACATGATCCTTGTATTTTTGTTGGCGTGGAGAAAAAACTT
452 GGAGGTTTGGCCCCAAAATTGGTAGACATGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATT
* * *
4765352 CAGT-TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGAC
517 CA-TCAAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAC
4765416 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTCT
581 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTCT
4765481 CAAGGTTTGATGAGGGA
646 CAAGGTTTGATGAGGGA
4765498 TAGGGGGCCA
Statistics
Matches: 586, Mismatches: 65, Indels: 24
0.87 0.10 0.04
Matches are distributed among these distances:
664 209 0.36
665 208 0.35
666 3 0.01
669 2 0.00
672 3 0.01
676 1 0.00
677 1 0.00
678 158 0.27
679 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (670 bp):
CGTATGCATAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTG
CTCAGCCAGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGCTCAGGTCCCCCTCTACATACTGT
CGATCCTGCTGCCACAACCCTCAATCCGATCCAATCTTAGACTGGGAATGAACTCCGACTAACAA
CACGAAACGAGCGGGCGGACGAGCACTACGCCAGCCAGAAAGACGGGATGAGTAAGCCGTGGATC
GATAGGGTGGTAGGAAGGTTTAGGAACATCTTCATATTTCTACCTAACAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTAATGGCAAGACGACTCGTTTT
CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGAATTTTTTAAAATTTTTTCAGAAGGAG
GTTTGGCCCCAAAATTGGTAGACATGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCATC
AAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTCTCAAGG
TTTGATGAGGGAATAAACTC
Found at i:4766605 original size:26 final size:26
Alignment explanation
Indices: 4766576--4766628 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4766566 CCGGTCCGAT
4766576 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
4766602 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
4766628 C
1 C
4766629 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:4767507 original size:26 final size:26
Alignment explanation
Indices: 4767478--4767530 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4767468 CCAGTCAGAT
*
4767478 CTTAGACTAGGAATGAGCTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
4767504 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
4767530 C
1 C
4767531 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:4768404 original size:26 final size:26
Alignment explanation
Indices: 4768375--4768427 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4768365 TCGGTCCGAT
4768375 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4768401 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4768427 C
1 C
4768428 CGAAGTCTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4768839 original size:897 final size:898
Alignment explanation
Indices: 4765690--4769342 Score: 4891
Period size: 894 Copynumber: 4.1 Consensus size: 898
4765680 CCAGTCCGAT
* **
4765690 CTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCACGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGTGCTCAAC
* ** *
4765755 CGGCCAGAAGGGCGGGATGCATAAGTCGAGGATCAGCCGGGTCCCCCTCTACGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCAGCCGGGTCCCCCTCTACGTGCTACCGATCC
* ** * * * ** * *
4765820 TACTACCGCAACCCTCGGTTTGGTCTGATCTTAGATTAGGAATGAACTTTGTTTGCCTAAACCAA
131 TGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
4765885 CCGATGAAACGAGCGGGCGAGCGGGCGAGCGGGTGGGCAGGTACTATGCCGGCTAGAGAGACGGG
196 CCGATGAAACGA----GTGAGC--G-G-GC-GG-GCG-AGGCACTATGCCGGC-AAAGAGACGGG
* * *
4765950 ATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCATAGCTTCATATTTCTGTGTGC
249 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTGTGTGC
* *
4766015 CAATGCCATTTTTATTGCTTGAAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCAT
314 CAATGCCA-TTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCAT
** * *
4766080 GGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTAAAACTTTTTACTGTTCGAGATTTTTTAA
378 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAA
* *
4766145 AA-ATTTTTTGAAAGCAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGCCA
443 AATA-TTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
*
4766209 TGCACAAAAAAATTCAGCTAAAAACTCAAACTGTACAAGATTTTGTGACCATTTGAAAAACGTGT
507 TGCACAAAAAAATTCAGCTAAAAACTCAAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * * * * *
4766274 CCTCATTTTAGACACTTTAATGGCTACTGGCGGCAATCCTGTAAAATCTCAAAAGCTCTTTAAGA
572 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
** * *
4766339 GGGTGTGACCTCTCGAGGTTTGATGAGGGACAAGGGGCCAATATAAGGGCCAAGTACCAGCACCC
637 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * * * * *
4766404 ATCGCACATCATGTGCGCACACCACCCTGGCCCCCCCGATCGTTGGAACCCCAATACCGTCGATC
702 ATCGCACATCATGTGCGCACACCCCCCCGGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTC
* *
4766469 AGGTTCTCCGGCGATGCTTCGA-TGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGC
767 AGGTTCTCCGAC-ATGC-TCGAGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGC
* * *
4766533 TCGAGCCCAGCATGTGCTGTCGCA-AA-CCTGGGTCCGGTCCGATCTTAGACTGAGAATGAACTC
830 CCGAGCCCAGCATGTGCTG-C-CATAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
4766596 CGTATG
893 CGTATG
* * *
4766602 CTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACAAAACGAGCGTACGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGTGCTCAAC
* * * * *
4766667 CGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCAGCCGGGTCCCCCTCTACGTGCTACCGATCC
** * * * *
4766732 TGCTACTACAACCCTAGGTCCGATCTAATATTAGACTGGGAATGAACTCCGTGTGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
4766797 CCGACGAAACGAGCAAGCAGGCGGGCGGGC-AGGCGCTATGCCGGCCAGAGATACGAGATGCGCA
196 CCGATGAAACGAG--TG-A-GCGGGCGGGCGAGGCACTATGCCGG-CAAAGAGACGGGATGCGCA
* * * * *
4766861 AGCTGTGGATCGATAGGTTGGTGGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTGTGTGCCAATGCC
* * *
4766926 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTAACGTGAAGTTTCATGGCAAGA
321 A-TTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** *
4766991 TGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
385 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATATTT
* * * ** * *
4767056 TTGGAAGGAGATTTGGCCCCAAACCTGGTAGAC-TGATCCTCATATTTTTGTT-ACAATGCATAA
450 TTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC-ATGCACAA
* *
4767119 AAAAATTCAGCGAAAAACTCAAACTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATT
514 AAAAATTCAGCTAAAAACTCAAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
4767184 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGATCTTTAAGGGGGTGTG
579 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
4767249 AGTTCTCGAGGTTTGATGAGGGATTGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAA
644 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
4767314 ATCATGTGCGCACACCCCCCC-GACCCCCCGATCATCGGAACCCCAAAGCCTCCAGTCAGGTTCT
709 ATCATGTGCGCACACCCCCCCGGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * *
4767378 CCAACAATGCTCTAGCGATGGTGCCTCGGCGAAGAAAAATGTGGCACCAACACATGCCCGAGCCC
774 CCGAC-ATGCTCGAGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCC
** * * * * *
4767443 AGCATGTGCTGCCGCAACCCTCGGTCCAGTCAGATCTTAGACTAGGAATGAGCTCCATATG
838 AGCATGTGCTGCCATAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * **
4767504 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACGCACGAAACGAGCATGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGTGCTCAAC
* ** * * * *
4767569 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGCCATGTCCCTCTCTATGTGCTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCAGCCGGGTCCCCCTCTACGTGCTACCGATCC
* * * * **
4767634 TGCTACTGCAACCCTCGGTCTGGTCTGATCTTAGACTGAGAATGAACTATGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
4767699 CCGATGAAACGAGT----GGGCGGGCG-GGCACTATGCTGGCAAGAGAGACGGGATACGCAAGCC
196 CCGATGAAACGAGTGAGCGGGCGGGCGAGGCACTATGCCGGCAA-AGAGACGGGATGCGCAAGCC
* *
4767759 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGTAGATCTTCATATTTCTGTGTGCCAATGCCATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTGTGTGCCAATGCCA-TT
* * *
4767824 TTATTGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * * *
4767889 TCATTTTCGATTTTTCACGATTTTCAAAACGTTTTACGGTTTGAGATTTTTTAAAATATTTTCGG
389 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATATTTTTGA
*
4767954 AAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
454 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * * *
4768018 TTCTGCCAAAAACTCAAAGTGAACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGA
519 TTCAGCTAAAAACTCAAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
4768083 CACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
584 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
4768148 TAGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCACATCAT
649 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
** * * *
4768213 GTGCAAACACCCCCCCTCGAACCCCCTGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCG
714 GTGCGCACA-CCCCCC-CGGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * *
4768278 ACACTGCTCCGA-TGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACTCATGCCCGAGCCCAG
777 ACA-TGCT-CGAGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAG
* * *
4768342 CATGTGCTACCATAACCCTCGATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
840 CATGTGCTGCCATAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
4768401 CTTAGACTGGGAATGAACTCTGTATGCCGAAGTCTACCCATGAAATGAGCGTACGGGTGCTCTAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGTGCTCAAC
* * * * * * * **
4768466 CGGCCAGAGGGGCGGGATGCGTAAGCAGGGGATCAGCCGGGTCACCTTCTGCGTACTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCAGCCGGGTCCCCCTCTACGTGCTACCGATCC
* * *
4768531 TGCTGCCGCAACCCTCGATCCGATCTCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
4768596 CCGATGAAACGAGTGAGCGGGCGGGCGA-GCACTACGCTGGACAAAGAGACGGGATGTGCAAGCC
196 CCGATGAAACGAGTGAGCGGGCGGGCGAGGCACTATGCCGG-CAAAGAGACGGGATGCGCAAGCC
*
4768660 GTGGATCGATAGGGTGGTAGGTGGGTTT-GGCAAATCTTCATATTTTTGTGTGCCAATGCCA-TT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTGTGTGCCAATGCCATTT
* * * * *
4768723 TCTGGCTTTTAAATTCATACAATTCTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACCACT
325 TATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
4768788 CGTTTTTTATTTTTCACGATTTTCAAAACTTTTTATGGTTCGAGA-TTTTTAAAATTTTTTTGAA
390 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATATTTTTGAA
* * *
4768852 AGGAGTTTTGGACCCAAACTTGGTAGACGTGATCCTTGTAATTTTGTAGGCATGCACAAAAAAAT
455 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
4768917 TCAGCTAAAAGCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
520 TCAGCTAAAAACTCAAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
4768982 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTAAGGGGGTGTGAGTTCT
585 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
4769046 CGAGGTTTGATGAGCGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
650 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * **
4769110 TGCGCACACCCCCCCGGCCCCCCCGATCGTCGGATCCCCAATGCCGCCGGTCAGGTTCTCCGGTG
715 TGCGCACACCCCCCCGGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GAC
* * *
4769175 ATGCTCTAGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAACACGTGCCCGAGCCCAGCATG
779 ATGCTCGAGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATG
* * * *
4769240 TGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTTCGTATG
844 TGCTGCCATAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
4769295 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
4769343 ACGGGCGGGC
Statistics
Matches: 2405, Mismatches: 308, Indels: 74
0.86 0.11 0.03
Matches are distributed among these distances:
893 25 0.01
894 618 0.26
895 15 0.01
896 52 0.02
897 373 0.16
898 259 0.11
900 31 0.01
901 72 0.03
902 316 0.13
903 221 0.09
904 234 0.10
905 1 0.00
906 1 0.00
907 2 0.00
908 3 0.00
909 1 0.00
910 2 0.00
911 1 0.00
912 178 0.07
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (898 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGTGCTCAAC
CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCAGCCGGGTCCCCCTCTACGTGCTACCGATCC
TGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGATGAAACGAGTGAGCGGGCGGGCGAGGCACTATGCCGGCAAAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTGTGTGCCAATGCCATTTT
ATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATATTTTTGAAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCAAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCCGGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAT
GCTCGAGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTG
CTGCCATAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:4769305 original size:26 final size:26
Alignment explanation
Indices: 4769269--4769321 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4769259 CTGATCCGAT
*
4769269 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4769295 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4769321 C
1 C
4769322 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4770904 original size:26 final size:26
Alignment explanation
Indices: 4770875--4770927 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4770865 CCGATCCGAT
4770875 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4770901 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4770927 C
1 C
4770928 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4771621 original size:718 final size:719
Alignment explanation
Indices: 4770246--4771710 Score: 2434
Period size: 718 Copynumber: 2.0 Consensus size: 719
4770236 GGGCACTATG
* * *
4770246 CCGGCCAGAGAGGCGGGATGCGCAAGCCATAAATCGATAGGGTGGTAGGTTGGTTTAGGCACATC
1 CCGGCCAGAGGGGCGGGATGCGTAAGCCAGAAATCGATAGGGTGGTAGGTTGGTTTAGGCACATC
*
4770311 TTCATATTTCTGCATGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGCCCCTTAAGCC
66 TTCATATTTCTGCATGCCAATACCATTTTTGTGGCTTGTAAATTCATACAATGGCCCCTTAAGCC
* * ** **
4770376 TTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
131 ATCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACAATTTTCAAAACTTTTTAC
* * *
4770441 GGTTTAGGATTTTTTAAAATTTTTTTGAAAGGAGATTTGGCCCAAACTTGGTAGACATGATCCTT
196 GGTTCAGGATTTTTTAAAATTTTTTCGAAAGGACATTTGGCCCAAACTTGGTAGACATGATCCTT
*
4770506 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTACAAACTCGAAGTGTACAAGATTTTGTGACC
261 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
*
4770571 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAGGGCTACTGGCAGCAAACCTGTAAAATCTC
326 ATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAAGGGCTACTGGCAGCAAACCTGTAAAATCTC
*
4770636 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
391 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGC
*
4770701 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCC
456 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGAAACCCC
*
4770766 AATGTTGCCGATCAGGTTCCCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
521 AATGTTGCCGATCAGGTTCCCCGACGATGGTACCCCGACGAAGAAAAATGCGGCACCAGCACATG
* ** *
4770831 CCCGAGCCCAGCATGTGCTGTCGTAACCCTCTATCCGATCCGATCTTAGACTGGGAATGAACTCC
586 CCCGAGCCCAACATGTGCTACCGCAACCCTCTATCCGATCCGATCTTAGACTGGGAATGAACTCC
4770896 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA-CCACGAAACGAGCGTGCGGGCGC
651 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
4770960 TCAA
716 TCAA
* * **
4770964 CCGGCCAGAGGGGCGGGATGCGTAAGTCGGGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATC
1 CCGGCCAGAGGGGCGGGATGCGTAAGCCAGAAATCGATAGGGTGGTAGGTTGGTTTAGGCACATC
*
4771029 TTCATATTTCTGCATGCCAATACCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
66 TTCATATTTCTGCATGCCAATACCATTTTTGTGGCTTGTAAATTCATACAATGGCCCCTTAAGCC
*
4771094 ATCACGTGAAGTTTCATGGC-AGCACGACTCATTTTCTATTTTTCACAATTTTCAAAACTTTTTA
131 ATCACGTGAAGTTTCATGGCAAG-ACAACTCATTTTCTATTTTTCACAATTTTCAAAACTTTTTA
* * *
4771158 CGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCC
195 CGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGACATTTGG-CCCAAACTTGGTAGACATGATCC
4771223 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG-ACAAGATTTTGTGA
259 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
4771287 CCATTTGAAAAAAGTGTCCCCATTTCAAACAGTTTAAGGGCTACTGGCAGCAAACCTGTAAAATC
324 CCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAAGGGCTACTGGCAGCAAACCTGTAAAATC
*
4771352 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGT
389 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGG
* *
4771417 GCCAAGTACCAGCACCCATCGCACATCATGTGCGGATACCCCCCGGCCCCCCGATCGTCGAAACC
454 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGAAACC
* ** *
4771482 CCAATGTTGCCGGTCAGGTTCCCCGGTGATGGTACCTCGACGAAGAAAAATGCGGCACCAGCACA
519 CCAATGTTGCCGATCAGGTTCCCCGACGATGGTACCCCGACGAAGAAAAATGCGGCACCAGCACA
* * * *
4771547 TGCCTGAGCCTAACATGTGCTACCGCAACCCTC-AGTCTGGTCCGATCTTAGACTGGGAATGAAC
584 TGCCCGAGCCCAACATGTGCTACCGCAACCCTCTA-TCCGATCCGATCTTAGACTGGGAATGAAC
* * *
4771611 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCTGG
648 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
*
4771676 CGCTCAG
713 CGCTCAA
* *
4771683 CTGGCCAGAGGGGCAGGATGCGTAAGCC
1 CCGGCCAGAGGGGCGGGATGCGTAAGCC
4771711 GAGTACCGAC
Statistics
Matches: 693, Mismatches: 50, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
717 3 0.00
718 571 0.82
719 119 0.17
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (719 bp):
CCGGCCAGAGGGGCGGGATGCGTAAGCCAGAAATCGATAGGGTGGTAGGTTGGTTTAGGCACATC
TTCATATTTCTGCATGCCAATACCATTTTTGTGGCTTGTAAATTCATACAATGGCCCCTTAAGCC
ATCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACAATTTTCAAAACTTTTTAC
GGTTCAGGATTTTTTAAAATTTTTTCGAAAGGACATTTGGCCCAAACTTGGTAGACATGATCCTT
GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
ATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAAGGGCTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGC
CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGAAACCCC
AATGTTGCCGATCAGGTTCCCCGACGATGGTACCCCGACGAAGAAAAATGCGGCACCAGCACATG
CCCGAGCCCAACATGTGCTACCGCAACCCTCTATCCGATCCGATCTTAGACTGGGAATGAACTCC
GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
TCAA
Found at i:4771622 original size:26 final size:26
Alignment explanation
Indices: 4771593--4771645 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4771583 CTGGTCCGAT
4771593 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4771619 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4771645 C
1 C
4771646 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4773213 original size:720 final size:709
Alignment explanation
Indices: 4771749--4773234 Score: 2271
Period size: 720 Copynumber: 2.1 Consensus size: 709
4771739 CTTTCGATCC
* * * *
4771749 TGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAAACTGGGAGTGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
4771814 CCGATGAAACGAGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGTAAGCCGTGGA
66 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGA
* ** *
4771879 TCGATAGGGTGGTTGGTGGGTATAGGCACATCTTCATATTTCTATGTGGCAATGCCATTTTTATG
131 TCGATAGGGTGGTAGGTGGGTATAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
*
4771944 GCTTGTAAATTCATACAATGGTCCCCTAAGCCTTAACGTGAAGTTTCATGGCAAGATGACTCCTT
196 GCTTGTAAATTCATACAATGGTCCCCTAAGCCTTAACGTGAAGTTTCATGGCAAGACGACTCCTT
*
4772009 TTCTATTTTTCACGATTTTTAAAACTTTTTAAGGTTCGGGATTCTTTAAAATTTTTTCAGAAAGA
261 TTCTATTTTTCACGATTTTTAAAACTTTTTAAGGTTCGAGATTCTTTAAAATTTTTTCAGAAAGA
* * * *
4772074 GTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATCCACAAAACAATTCAG
326 GTTTTGGCCCC-AACTTGGTAGACGTGATCCTTGTAGTTTTGTTGGCATCCACAAAAAAATTCAA
4772139 CTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
390 CTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
4772204 TAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTTTTGAG
455 TAATGGCTACTGGCAGAAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAG
4772269 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG
520 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG
**
4772334 CACACCCCCCGGCCCCCCCGATTTTCGGAACCCCAATGCCGCTGGTCAAATTCTCCGACGATGCT
585 CACACCCCCCGGCCCCCCCGATTCGCGGAACCCCAATGCCGCTGGTCAAATTCTCCGACGATGCT
* *
4772399 CCGGCGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCTCGAACCCTACATG
650 CCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAACCCTACATG
* * *
4772459 TGCTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAC
1 TGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
4772524 CCGACGAAACGAGCGGCCGGGCGGACGGGCAGGCGGGCACTACGCCGGCCTGAGAGACGGGATGC
66 CCGACGAAACGA---G-C--G-GG-C--G--GGCGGGCACTACGCCGACCAGAGAGACGGGATGC
*
4772589 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
119 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTATAGGCACATCTTCATATTTCTACATGCCAAT
* *
4772654 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
184 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTAACGTGAAGTTTCATGGCA
* * * ** *
4772719 ATACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATT
249 AGACGACTCCTTTTCTATTTTTCACGATTTTTAAAACTTTTTAAGGTTCGAGATTCTTTAAAATT
* * * * * *
4772784 TTTTCGGTAGGAGTTTTGGCCGC-ACTTGGTAGATGTGATCCTTGTAGTTTTGTTGGCATGCACA
314 TTTTCAGAAAGAGTTTTGGCCCCAACTTGGTAGACGTGATCCTTGTAGTTTTGTTGGCATCCACA
*
4772848 AAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
379 AAAAAATTCAACTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
4772913 TTCAGACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
444 TTCAGACACTTTAATGGCTACTGGCAGAAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
4772978 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
509 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACA
* * **
4773043 CATCATGTGCGCACACCTCCCCGGCCCCCCTGA-TCGCTGATACCCCAATGCCG-TCGGTCAGGT
574 CATCATGTGCGCACACC-CCCCGGCCCCCCCGATTCGCGGA-ACCCCAATGCCGCT-GGTCAAAT
* ** * *
4773106 TCTCCGGCGATGCT-CGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGGACATGCCCGAG
636 TCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAA
4773170 CCC-AGCATG
701 CCCTA-CATG
*
4773179 TGCTGCCCCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
1 TGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
4773235 TTAGACTGGG
Statistics
Matches: 701, Mismatches: 59, Indels: 22
0.90 0.08 0.03
Matches are distributed among these distances:
710 69 0.10
713 1 0.00
714 1 0.00
716 1 0.00
717 2 0.00
718 1 0.00
719 1 0.00
720 352 0.50
721 45 0.06
722 228 0.33
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (709 bp):
TGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTATAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCCTAAGCCTTAACGTGAAGTTTCATGGCAAGACGACTCCTT
TTCTATTTTTCACGATTTTTAAAACTTTTTAAGGTTCGAGATTCTTTAAAATTTTTTCAGAAAGA
GTTTTGGCCCCAACTTGGTAGACGTGATCCTTGTAGTTTTGTTGGCATCCACAAAAAAATTCAAC
TAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGAAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGC
ACACCCCCCGGCCCCCCCGATTCGCGGAACCCCAATGCCGCTGGTCAAATTCTCCGACGATGCTC
CGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAACCCTACATG
Found at i:4773237 original size:26 final size:26
Alignment explanation
Indices: 4773208--4773260 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4773198 CCGGTCCGAT
*
4773208 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
4773234 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
4773260 C
1 C
4773261 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4774287 original size:895 final size:896
Alignment explanation
Indices: 4772544--4774662 Score: 3303
Period size: 895 Copynumber: 2.4 Consensus size: 896
4772534 GAGCGGCCGG
* *
4772544 GCGGACGGGCAGGCGGGCACTACGCCGGCCTGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
1 GCGGAC-GG-AGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
4772609 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
64 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
*
4772674 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAATACGACTCGTTTTCTATTT
129 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* *
4772739 TTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGTAGGAGTTTTGGC
194 TTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * *
4772804 CGC--ACTTGGTAGATGTGATCCTTGTAGTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAAC
259 CCCAAACTTGGTAGACGTGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
4772867 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
323 TCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCT
**
4772932 ACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATG
388 ACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
4772997 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCTC
453 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCTC
* * * * *
4773062 CCCGGCCCCCCTGATCGCTGATACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCGGCGAT
518 CCCGGCCCCCCCGATCGCGGATACCCCAAAGCCCTCGGTCAGGTTCTCCGGCGATGCTCGACGAT
*
4773127 GGTGCCCCGACGAAGAAAAATGTGGCACCAGGACATGCCCGAGCCCAGCATGTGCTGCCCCAACC
583 GGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCCCAACC
* * *
4773192 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCAT
648 CTCCGTCAGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCAT
* * *
4773257 ATGCCTAAGTCAACCCACGAAATGAGCGTGTAGGGGCTCAATCGGCCAGAGGGGCAGGATGCGCA
713 ATGCCTAAGTCAACCCACGAAACGAGCGTGGAGGCGCTCAATCGGCCAGAGGGGCAGGATGCGCA
* * * * * *
4773322 AGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTATCTATCCTACTACCGTAACCCTCGGTCCGG
778 AGCCGAGAATCGACCGGGTCCCCCTCTACGTGCTAGCTATCCTACTACCGCAACCCTCGATCCAG
* * *
4773387 TCTGATCTTAAACTGGGAGTGAACTCCGTATGCCTAAGCCAACCGATGAAACGAA
843 TCTGATCTTAAACTAGGAATGAACTCCGTATGCCAAAGCCAACCGATGAAAC-AA
* * *
4773442 -TGGAC-G-GGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGT
1 GCGGACGGAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * * *
4773504 GGTAGGCGGGTTTAGGCACATCTTAATATTTCTACGTGCCAATGCGATTTTTATGGCTTGTAAAT
66 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAT
*
4773569 TCATACAATGGTCCCTTAAGTCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
131 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * *
4773634 CATGATTTTTTAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA-TTTATGACC
196 CACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT-TGGCC
* * *
4773698 CCAAACTTGGTAGACATGATCCTTGTATTTTCATTGGCATGCACAAAAAAATTCAGCTAAAAAGT
260 CCAAACTTGGTAGACGTGATCCTTGTATTTT-GTTGGCATGCACAAAAAAATTCAGCTAAAAACT
4773763 CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTA
324 CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTA
* * *
4773828 CTGGCAGCACACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
389 CTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
* *
4773893 GGGATAGGGGGCCAATATTAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACC-CC
454 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCTCC
* *
4773957 CTGGCCCCCCCGATCGCCGGA-ACCCCAAAGCCACT-GGTCAGGTTCTCCGGTGATGCTCCGACG
519 CCGGCCCCCCCGATCG-CGGATACCCCAAAGCC-CTCGGTCAGGTTCTCCGGCGATGCT-CGACG
* *
4774020 ATGGTGCCCCTG-TGAAGAAAAATG-GGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
581 ATGGTGCCCC-GACGAAGAAAAATGTGG-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCCC
*
4774083 AACCCTCCGTCAGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
644 AACCCTCCGTCAGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
* * *
4774148 TCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGA-GCGCTCAGTCGGCCAGAGGGGC-GAGA
709 CCATATGCCTAAGTCAACCCACGAAACGAGCGTG-GAGGCGCTCAATCGGCCAGAGGGGCAG-GA
* * * * *
4774211 TGCGCAAGCCGAGAATCGATCGGGTCCCCCTTTGCTTGCT-GCTGATCCTGCTACCGCAACCCTC
772 TGCGCAAGCCGAGAATCGACCGGGTCCCCCTCTACGTGCTAGCT-ATCCTACTACCGCAACCCTC
* *
4774275 GATCTAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCAAAGCCAACCGATGAAACAA
836 GATCCAGTCTGATCTTAAACTAGGAATGAACTCCGTATGCCAAAGCCAACCGATGAAACAA
*
4774336 GCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
1 GCGGAC-GG-AGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
4774401 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAA
64 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
* *
4774466 ATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACAACTCGTTTTCTATTT
129 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * *
4774531 TTCACGATTTTTGAAACTTTTTGCCGTTCGGGATGTTTTAAAATTTTTTCAGAAGGAGTTTTGGC
194 TTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
*
4774596 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAAC
259 CCCAAACTTGGTAGACGTGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
4774661 TC
323 TC
4774663 GACGTAAAGG
Statistics
Matches: 1112, Mismatches: 90, Indels: 37
0.90 0.07 0.03
Matches are distributed among these distances:
892 3 0.00
893 232 0.21
894 58 0.05
895 519 0.47
896 2 0.00
897 5 0.00
899 286 0.26
900 7 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
GCGGACGGAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAT
TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
CACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
CAAACTTGGTAGACGTGATCCTTGTATTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCA
AAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACT
GGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCTCCCC
GGCCCCCCCGATCGCGGATACCCCAAAGCCCTCGGTCAGGTTCTCCGGCGATGCTCGACGATGGT
GCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCCCAACCCTC
CGTCAGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATG
CCTAAGTCAACCCACGAAACGAGCGTGGAGGCGCTCAATCGGCCAGAGGGGCAGGATGCGCAAGC
CGAGAATCGACCGGGTCCCCCTCTACGTGCTAGCTATCCTACTACCGCAACCCTCGATCCAGTCT
GATCTTAAACTAGGAATGAACTCCGTATGCCAAAGCCAACCGATGAAACAA
Found at i:4775085 original size:460 final size:456
Alignment explanation
Indices: 4774229--4775124 Score: 1368
Period size: 460 Copynumber: 2.0 Consensus size: 456
4774219 CCGAGAATCG
* * * * *
4774229 ATCGGGTCCCCCTTTGCTTGCTGCTGATCCTGCTACCGCAACCCTCGATCTAGTCTGATCTTAGA
1 ATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCGATCGAGTCTGATCTTAGA
* *
4774294 CTAGGAATGAACTCCGTATGCCAAAGCCAACCGATGAAACAAGCGGGCGGGCAGGCGGGCACTAC
66 CTAGGAATGAACTCCGAATGCCAAAGCCAACCGACGAAACAAGCGGGCGGGCAGGCGGGCACTAC
* * *
4774359 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
131 ATCGACCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
4774424 CTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
196 CTTCATATTTTTGCATGCCAATGCCATTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGC
* * ** *
4774489 CTTCACGTGATGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG
261 CTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGACTTTCAAAACTTTTTA
*
4774554 CCGTTCGGGATGTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
326 CAGTTCGGGATGTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
4774619 TTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGACGTAAAGGGATAGGGGATC
391 TTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGACGTAAAGGGATAGGGGATC
4774684 C
456 C
* * *
4774685 ATCGGGTGCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTC-AGTCCGATTC-GATCTTA
1 ATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCGA-T-CGAGTCTGATCTTA
* * * ** * *
4774748 GATTGGGAATGATCTTTGAATGCCTAAGCCAACCGACGAAACAAGCGGGCAGACGGGCGGGCGGG
64 GACTAGGAATGAACTCCGAATGCCAAAGCCAACCGACGAAACAAGC-GG--G-CGGGCAGGCGGG
* *
4774813 CACTACATCGATCAGAGAGACGGGATGCATAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
125 CACTACATCGACCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
4774878 GCACATCTTCATATTTTT-TAGTGCCAATGCCATTTTTATGGCATGTAAATTCATACAATGGTCC
190 GCACATCTTCATATTTTTGCA-TGCCAATGCCATTTTTATGGCATGTAAATTCATACAATGGTCC
* *
4774942 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACCACTCGTTTTCTATTTTTCATGACTTTCAAAA
254 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGACTTTCAAAA
* *
4775007 CTTTTTACAGTTCGGGATTTTTTAAAATTTTTTC-GAAAGGATTTTTGGCCCCAAACTTGGTAGA
319 CTTTTTACAGTTCGGGATGTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
4775071 TGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
383 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGA
4775125 AGTGTACAAG
Statistics
Matches: 396, Mismatches: 36, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
455 1 0.00
456 86 0.22
457 6 0.02
459 3 0.01
460 300 0.76
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.30
Consensus pattern (456 bp):
ATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCGATCGAGTCTGATCTTAGA
CTAGGAATGAACTCCGAATGCCAAAGCCAACCGACGAAACAAGCGGGCGGGCAGGCGGGCACTAC
ATCGACCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
CTTCATATTTTTGCATGCCAATGCCATTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGC
CTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGACTTTCAAAACTTTTTA
CAGTTCGGGATGTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
TTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGACGTAAAGGGATAGGGGATC
C
Found at i:4776527 original size:25 final size:25
Alignment explanation
Indices: 4776499--4776546 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
4776489 TCCGATCTTA
*
4776499 GACTGGGAATGAACTCCGTATGCTT
1 GACTAGGAATGAACTCCGTATGCTT
* *
4776524 GACTATGAATGAACTTCGTATGC
1 GACTAGGAATGAACTCCGTATGC
4776547 CTAAGTCAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (25 bp):
GACTAGGAATGAACTCCGTATGCTT
Found at i:4777438 original size:26 final size:26
Alignment explanation
Indices: 4777388--4777440 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4777378 CTGATCTGAT
* **
4777388 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
4777414 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
4777440 C
1 C
4777441 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:4779619 original size:26 final size:26
Alignment explanation
Indices: 4779583--4779635 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4779573 CTAGCCTGAT
4779583 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4779609 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4779635 C
1 C
4779636 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4782053 original size:26 final size:26
Alignment explanation
Indices: 4782017--4782069 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4782007 TCGGTCTGAT
4782017 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4782043 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4782069 C
1 C
4782070 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4784529 original size:25 final size:26
Alignment explanation
Indices: 4784501--4784552 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4784491 CCGGTCCGAT
*
4784501 CTTAGA-TTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4784526 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4784552 C
1 C
4784553 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4784916 original size:898 final size:893
Alignment explanation
Indices: 4782882--4785426 Score: 3635
Period size: 872 Copynumber: 2.9 Consensus size: 893
4782872 GCCCAGCATG
* *
4782882 TGCTGCCGTAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAA
1 TGCTGCCGTAA-CCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
4782947 CCGACGAAACGAGCGGGCGGGTGGGCGGGCAGGCACTACTCTGGCCAGAGAGACGGGATGCGCAA
65 CCGATGAAACGAGCGGGC----GGGCAGGCAGGCACTACT-TGGCCAGAGAGACGGGATGCGCAA
* *
4783012 GCCATGGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTCTATG--TGCCAATGC
125 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TT-TATGCATGCCAATGC
* *
4783075 CATTTTTATGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTAACGTGAAGTTTCATGGCAAG
188 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * *
4783140 ACGACTCGTTTTCTATTTTTCAAGATTTTCAAAGCTTTCTGAGGTTTGGGATTTTTTAAAATTTT
253 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGG-TTGAGATTTTTTAAAATTTT
*
4783205 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCATAA
317 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAA
** * * *
4783270 AAAAATTCAGCTAAAAATGCGAAGTGTACAAGATTTTTTGAGCATTTGAAAAAAGTGTCCCCATT
382 AAAAATTCAGCTAAAAACCCGAAATGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATT
* * *
4783335 TCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTTAAATG-TGCTCTAAGGGGGTGT
447 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-CTTTAAGGGGGTGT
4783399 GAGTTCT-GAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
511 GAGTTCTCG-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
4783463 ACATCATGTGCACACACCCCCCCGGCCACCCGATCGTCGAAACCCCAATGCCGA-CGGTCAGGTT
575 ACATCATGTGCGCACACCCCCCCGACCCCCCGATCGTCGAAA-CCCAATGCC-ACCGGTCAGGTT
4783527 CTCTGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
638 CTCTGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
4783592 CCAGCATGTGCTGCCGCAA----C--CC--T-CGA---T---TTGG--T---CT--G-AT-CTTA
703 CCAGCATGTGCTGCCGCAACCCTCGTCCGGTCCGATCTTAGATTGGAATGAACTCCGTATGCTTA
* * *
4783633 GACCGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCTTGTGGGCGCTCAGTCGGC
768 GACCGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCACTCAGTCGGC
* ** *
4783698 CAGAGGGACGGGATGCGCAAGCCAGGGATCGACTGGGTCCCCCTCTGCGTGCTACCGATCC
833 CAAAGGGACGGGATGCGCAAGCCAGGGATCGACCAGGTCCCCCTCTGCATGCTACCGATCC
* * * * * * * *
4783759 TACTGCCATAACCTCGGTCCAAT-TCAATCTTAGACTGGGAATTAACTCCATATGTCTAAGCCAA
1 TGCTGCCGTAACCTCGATCCGATCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
4783823 CCGATGAAACGAGCGGGCGGGCAGGCCGGCACTACGCTGGCCAGAGAGACGGGATGTGCAAGCCG
65 CCGATGAAACGAGCGGGCGGGCAGGCAGGCACTAC-TTGGCCAGAGAGACGGGATGCGCAAGCCG
* *
4783888 TGGATCGATAGGGTGGTAGGAGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
129 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCATGCCAATGCCATTTT
*
4783953 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACGACT
194 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
4784018 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTCAAAATTTTTTCGGA
259 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTT-GAGATTTTTTAAAATTTTTTCGAA
*
4784083 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAAA
323 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAAT
* *
4784148 TCAGCTAAAAACCCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGAC
388 TCAGCTAAAAACCCGAAATGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATTTCAGAC
*
4784213 ACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
453 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
4784278 CGAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAAGTACCAGCACCCATCGCACATCATG
518 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* *
4784343 TGCGCACA-CCCCCCGACCCCCTCGATCGTCGGAACCTCAATGCCACCGGTCAGGTTCTCCGACG
583 TGCGCACACCCCCCCGACCCCC-CGATCGTCGAAACC-CAATGCCACCGGTCAGGTTCTCTGACG
** **
4784407 ATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
646 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* * * *
4784472 TGCTACCGTAACCCTCAGTCCGGTCCGATCTTAGATTGGAATGAACTCCGTATGCTTAGACTGGG
711 TGCTGCCGCAACCCTC-GTCCGGTCCGATCTTAGATTGGAATGAACTCCGTATGCTTAGACCGAG
*
4784537 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAGTCGGCCAAAGGG
775 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCACTCAGTCGGCCAAAGGG
** * **
4784602 GTGGGATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTGCATGCTGTCGATCC
840 ACGGGATGCGCAAGCCAGGGATCGACCAGGTCCCCCTCTGCATGCTACCGATCC
* * * *
4784656 TGCTGCCGTAACCTTTGATCCGGTCTGATCTTAGACTGGGAATGAAGTCTGTATGCCTAAGCCAA
1 TGCTGCCGTAACC-TCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * **
4784721 CCGATGAAATGAGCGGACGGGCAGGCAGGCACTACATTGGCCAAAGAGACGGGAAGCACAAGTGG
65 CCGATGAAACGAGCGGGCGGGCAGGCAGGCACTAC-TTGGCCAGAGAGACGGGATGCGCAAGCCG
*
4784786 TGGATCGATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTATGCATGCCAATGCCATTTT
129 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCATGCCAATGCCATTTT
* *
4784851 TATGGCTTGTAAATTCTTACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
194 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * *
4784916 CGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGATTAAGGATTTTTTAAAACTTTTTT-GT
259 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTGA-GATTTTTTAAAA-TTTTTTCGA
* *
4784980 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACA
322 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAA
* * * *
4785045 TTCAGCTAAAAACTC-AAACTCTACAAGATTTTGTGAACATTTGAAAAAAGTTTTCCCATTTCAG
387 TTCAGCTAAAAACCCGAAA-TGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATTTCAG
* *
4785109 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTATGAGTT
451 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
4785174 CTCGAGGTTTGATGAGGGATATGGGGCCAATATAAAGGCCAGGTACCAGCACCCATCGCACATCA
516 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
4785239 TGTGCGCACACCCCCCCGACCCACCCGATCCTCGAAAAACCAATGCCGCCGATCAGGTTCTCTGA
581 TGTGCGCACACCCCCCCGACCC-CCCGATCGTCG-AAACCCAATGCCACCGGTCAGGTTCTCTGA
* *
4785304 CGATGCTCCGACGATGGTGCCCCGATGAAGAAAATTACGGCACCAGCACATGCCCGAGCCCAGCA
644 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
* * *
4785369 TGTGTTGCCGCAACCCATGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGC
709 TGTGCTGCCGCAACCC-TCGTCCGGTCCGATCTTAGATT-GGAATGAACTCCGTATGC
4785427 CTAAGCCAAC
Statistics
Matches: 1487, Mismatches: 136, Indels: 67
0.88 0.08 0.04
Matches are distributed among these distances:
870 3 0.00
871 18 0.01
872 568 0.38
873 2 0.00
875 1 0.00
876 61 0.04
877 9 0.01
879 2 0.00
881 1 0.00
882 3 0.00
885 1 0.00
888 4 0.00
890 1 0.00
893 2 0.00
895 1 0.00
896 2 0.00
897 130 0.09
898 515 0.35
899 139 0.09
900 24 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
TGCTGCCGTAACCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGATGAAACGAGCGGGCGGGCAGGCAGGCACTACTTGGCCAGAGAGACGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCATGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTGAGATTTTTTAAAATTTTTTCGAAAGG
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCA
GCTAAAAACCCGAAATGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCCGACCCCCCGATCGTCGAAACCCAATGCCACCGGTCAGGTTCTCTGACGATGCT
CCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
CCGCAACCCTCGTCCGGTCCGATCTTAGATTGGAATGAACTCCGTATGCTTAGACCGAGAATGAA
CTCCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCACTCAGTCGGCCAAAGGGACGGGA
TGCGCAAGCCAGGGATCGACCAGGTCCCCCTCTGCATGCTACCGATCC
Found at i:4786659 original size:26 final size:26
Alignment explanation
Indices: 4786630--4786682 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4786620 CCGGTCCGAT
* *
4786630 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGAATG
4786656 CTTAGACTAGGAATGAACTCCGAATG
1 CTTAGACTAGGAATGAACTCCGAATG
4786682 C
1 C
4786683 CTAAGTCGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGAATG
Found at i:4787580 original size:26 final size:26
Alignment explanation
Indices: 4787531--4787581 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
4787521 AGTCTGATCA
***
4787531 TAGACTGGGAATGAACTTTGTATGCT
1 TAGACTGGGAATGAACTCCATATGCT
4787557 TAGACTGGGAATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
4787582 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:4787742 original size:899 final size:901
Alignment explanation
Indices: 4785977--4788501 Score: 3532
Period size: 899 Copynumber: 2.8 Consensus size: 901
4785967 CGGGCTGGCG
* * * * *
4785977 GGCACTACGTCGGCTAGAGAGACAGGACGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTT
1 GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
4786042 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGGTTGTAAATTCGTACAATGGTC
66 AGGCACATCTTCATATTTCTAC-TGCCAATG-CATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
4786107 CCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTTAGGATTTTTG-A
129 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTGAA
* * * *
4786171 AACTTTTTCAGGTTCGAGA-TTTTTAAAATTTTTTCAGAAGGGGTTTTGGCCTCAAACTTTGTAG
193 AAC-TTTAC-GGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
*
4786235 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAACAAATTCAGCTAAAAACTCAAAGTGTACAAA
256 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAA-AAATTCAGCTAAAAACTCGAAGTGTAC-AA
* *
4786300 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACTGGCAGCAAAC
319 GATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
4786365 CTGTAAAATCTCAAATGCTCTCTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
384 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
4786430 AAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTACGCACACCCCCCTCGGCCCCCCC
449 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC-CGGCCCCCCC
* * * *
4786495 GATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCTGGCGATGGTGCCCCGAG
513 GATCGTCGGAACCCAAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCG-G
* *
4786560 -GAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGTATGTGCTGCCGCAACCCTCGGTCCGG
577 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* *
4786624 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGA-ATGCCTAAG
642 TCCGATCATAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC-ATATGCCTAAG
** * * ***
4786688 TCGGCCCACGAAACGAGCGTGCGTGTGCTCAGCCGGCCAGAAGGGCGAGATACGCTAGGTAGGAA
706 TCAACCCACGAAACGAGCGTACGTGTGCTCAGCCGGCCAGAAGGGCGAGATACGCAAACCAGGAA
* * *
4786753 TCGATCGGGTCCCCCTCTGCGTGCTGCCAATCCTACTACAGTAACCTTCAGTCCAGTCTGATCTT
771 TCGATCGGGTCCCCCTCTGCGTGCTGCCAATCCTACTACAGTAACCCTCAGACCAGTCCGATCTT
* * * * **
4786818 ATACTGGGAATGAACTCCGTATGCCTGAGCCAATCGATGAAATGAGCGGGCGGGC-GA-GCGGGT
836 AGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGCGGAGGCGGGT
4786881 -
901 A
* *
4786881 GAGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTT
1 G-GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTT
* * * *
4786946 TAGGCACATCTTAATATTTCTACTCGCCAATGCAATTTTTACGGCTTTTAAATTCATGCAATGGT
65 TAGGCACATCTTCATATTTCTACT-GCCAATGC-ATTTTTATGGCTTGTAAATTCATACAATGGT
*
4787011 CTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTGAA
128 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTGAA
*
4787076 AAC-TTACGGTTCGAGATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGGCCCCAAACATGGTAGA
193 AACTTTACGGTTCGAGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGA
*
4787139 CGTCATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
257 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
4787204 TTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
322 TTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
4787269 TAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
387 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
4787334 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATC
452 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGATC
**
4787398 ACCGGAACCCAAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGCGAAG
517 GTCGGAACCCAAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGCGAAG
* ** * * * *
4787463 AAAAATACGGCACCAAAACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCAGTCTGA
582 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGA
**
4787528 TCATAGACTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACC
647 TCATAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACC
* * *
4787593 CACGAAACGAGCGTACAG-GTGCTCAGCCGGCCAGAGGGGC-AGGATGCGCAAACCAGGGATC-A
712 CACGAAACGAGCGTAC-GTGTGCTCAGCCGGCCAGAAGGGCGA-GATACGCAAACCAGGAATCGA
* * * * * **
4787655 GTCGGGTCCCCTTCTGTGTGCTGTCAATCCTGCTGTC-GTAACCCTCAGACTGGTCCGATCTTAG
775 -TCGGGTCCCCCTCTGCGTGCTGCCAATCCTACT-ACAGTAACCCTCAGACCAGTCCGATCTTAG
4787719 ACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGCGGACGGGCGGGT
838 ACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGCGGA--GGCGGGT
4787784 A
901 A
* * * * *
4787785 GGCACTACGTCGGGCAGAGAGACGGGATGCGCAAGCTTTAGATCGATTGGGTAGTAGGTGGGTTT
1 GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTT
*
4787850 AGGCACATCTTCATATTTCTGGA-TGCGAATGTCATTTTTATGGCTTGTAAATTCATACAATGGT
66 AGGCACATCTTCATATTTCT--ACTGCCAATG-CATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
4787914 CCCTTGAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTTTCAA
128 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTGAA
* * * *
4787979 AACTTTTTGA-GGTTTGGGATTTTTTTAAAA-TTTTTCTAGAAGGTGTTTTGGTCCCAAACTTGG
193 AAC--TTT-ACGGTTCGAGA-TTTTTTAAAATTTTTTC-AGAAGGAGTTTTGGCCCCAAACTTGG
* * * *
4788042 TGGACATGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTAC
253 TAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
4788107 AAGATTTTGTGG-CCATTTGAAAAAAGAGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
317 AAGATTTTG-GGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
4788171 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
381 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* ** * *
4788236 GGCCAATATAAGGGCCAAGTACTAGCACCCATTGCACATCATGTGCGAACAGCCCCCCCGGCCAC
446 GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCCGGCCCC
* *
4788301 CCCGATCGTCGGAACCCCAAA-GCCGCCGGTTAGGTTCTCC---GA-----C-A--A---TGCTC
510 CCCGATCGTCGGAA-CCCAAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCC
* * * *
4788351 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCAGCCGTAACCCTCGATC
574 CGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * * *
4788416 CGGTCCAATCATAAACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAATTCCATATGCCTA
639 CGGTCCGATCATAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTA
*
4788481 AGTCAACCCATGAAACGAGCG
704 AGTCAACCCACGAAACGAGCG
4788502 GGCGGGTGGG
Statistics
Matches: 1457, Mismatches: 132, Indels: 72
0.88 0.08 0.04
Matches are distributed among these distances:
896 137 0.09
898 4 0.00
899 332 0.23
900 9 0.01
901 175 0.12
902 37 0.03
903 254 0.17
904 11 0.01
905 169 0.12
906 15 0.01
907 64 0.04
908 201 0.14
909 2 0.00
910 41 0.03
911 6 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (901 bp):
GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTACTGCCAATGCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTGAAAAC
TTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
GGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCG
GAACCCAAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGCGAAGAAAA
ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCAT
AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACG
AAACGAGCGTACGTGTGCTCAGCCGGCCAGAAGGGCGAGATACGCAAACCAGGAATCGATCGGGT
CCCCCTCTGCGTGCTGCCAATCCTACTACAGTAACCCTCAGACCAGTCCGATCTTAGACTGGGAA
TGAACTCCATATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGCGGAGGCGGGTA
Found at i:4789195 original size:26 final size:26
Alignment explanation
Indices: 4789159--4789211 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4789149 CCGGTCCGAT
*
4789159 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4789185 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4789211 C
1 C
4789212 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4790435 original size:160 final size:159
Alignment explanation
Indices: 4790036--4790435 Score: 613
Period size: 160 Copynumber: 2.5 Consensus size: 159
4790026 CATGTGCTGT
* * * *
4790036 CGTAACCCTCGATCCGGTTTGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGTCAACC-ACG
1 CGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* *
4790100 GAACGAGCGTGCAGGCACTCAGTCAGCCAGAGGGAGGGATACGTAAATCGGGGATCGGTCGGGTC
66 GAACGAGCGTGCAGGCGCTCAGTCAGCCAGAGGGAGGGATACGCAAATCGGGGATCGGTCGGGTC
* *
4790165 CCCCTCTGTGTGCTTGGTGATCCTGCTAC
131 CCCCTCTGCGTGCTTGGCGATCCTGCTAC
* * *
4790194 CGTAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACG
1 CGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * *
4790259 GAATGAGCGTGCAGGCGCTCAGTCGGCCAGAGGGGAGGGATGCGCAACTCGGGGATCGGTCGGGT
66 GAACGAGCGTGCAGGCGCTCAGTCAGCCAGA-GGGAGGGATACGCAAATCGGGGATCGGTCGGGT
4790324 CCCCCTCTGCGTGCTTGGCGATCCTGCTAC
130 CCCCCTCTGCGTGCTTGGCGATCCTGCTAC
*
4790354 CGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG
1 CGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * *
4790419 AAACGAGTGGGCAGGCG
66 GAACGAGCGTGCAGGCG
4790436 GGCACTACGC
Statistics
Matches: 217, Mismatches: 23, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
158 54 0.25
159 31 0.14
160 132 0.61
ACGTcount: A:0.21, C:0.27, G:0.31, T:0.21
Consensus pattern (159 bp):
CGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
GAACGAGCGTGCAGGCGCTCAGTCAGCCAGAGGGAGGGATACGCAAATCGGGGATCGGTCGGGTC
CCCCTCTGCGTGCTTGGCGATCCTGCTAC
Found at i:4791116 original size:26 final size:26
Alignment explanation
Indices: 4791087--4791139 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4791077 CCGGTCTAAT
4791087 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
4791113 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4791139 C
1 C
4791140 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4792229 original size:902 final size:896
Alignment explanation
Indices: 4790217--4808356 Score: 13688
Period size: 903 Copynumber: 20.2 Consensus size: 896
4790207 CTGGTCTGAT
* * * * * * * * *
4790217 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGGAATGAGCGTGCAGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * ** **
4790282 CGGCCAGAGGGGAGGGATGCGCAA-CTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTTGGCGAT
66 CGGCCAAAGGGGCGGGATGCGCAAGC-CGGGGATTGACCGGGTCCCCCTCTGCGTGC-TACCGAT
* * * *
4790346 CCTGCTACCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CCTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * * * * *
4790411 AACCGATGAAA----CGAGTGGGCAGGCGGGCACTACGCCGACCAAAGAGACGAGATCCGAAAGC
194 AACCGACGAAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* *
4790472 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTGCATGCCAATACCATT
259 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
** *
4790537 TTTATGGCTTGTAAATTCATACAATGGTCATTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGA
324 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
4790602 CTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGATTTGGGATTTTTTAAAATTTTTTTG
389 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
* * *
4790667 GAAGGATTTTTGGCCCCAAACTTGGTAGCCATGATCCTTGTA-CTTTGTTGGCATGCACAAAAAA
454 GAAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* **
4790731 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCTTATTTCAG
518 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
4790796 ACACTTTAATGACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
583 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
** * *
4790861 CTATAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAAGTACCAGCACCCATTGCACATCA
648 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
4790926 TGTGCGAACACCCACCCCGGCCCCCCGATCGCCGGAACCCCAATGACGTCGGTTAGGTTCTCCGA
713 TGTGCGCACA-CC-CCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* ** * * *
4790991 CGATGCTCTGGCGATGGTGCCCCGGTGAAGAAAAATACGGCACCACCACATGCTCGATCCCAGCA
776 CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
* * * *
4791056 TGTGCTGCCGTAACCCAT-GGTCCGGTCTAATCTTAGACTAGGAATGAACTCCGTATG
841 TGTGCTGCTGCAACCC-TCGGTCCGGTC-GATCTTAGACTGGGAATGAACTCCGTATG
* * * ** *
4791113 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * * *
4791178 TGGCCACAGGGGCGGGATGTGCAAGCCGAGGA-TCAGCGGGGTCCCCCTCTGGGTGCTACCGATC
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATTGA-CCGGGTCCCCCTCTGCGTGCTACCGATC
* * * * * *
4791242 CTACTGCCCCAACCCTCAATCTGGTCTGGTCTTAGACTGGGAATGAACTCTGTATGCATAAGCCA
130 CTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
4791307 ACCGACAAAACGAACGGGCGGGCGGG-GGGTCAGGCACTACGCCGGCCAGAGAGACAGGATGCGC
195 ACCGAC--GA--AACGGGCGGGCGGGCGGG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
4791371 AAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGAACATCTTCATATTTCTACATGCCAATGC
255 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
4791436 CATTTTTATGGTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
320 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * * **
4791501 ACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGCTCAAGATTTTTTAAAATTTT
385 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * * *
4791566 TTCGGAAGGA-TTTGGGCCCAATCTTTGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
450 TTCGGAAGGATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
4791630 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
515 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
4791695 CAGACACTTTAATGGCTACTGGCAGCTAACCTATAAAATCTCAAATGCTTTTTAAGGGGGTGTGA
580 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
4791760 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTACCAGCACCCATCGTACA
645 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
4791825 TCATGTGCGTACACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCC
710 TCATGTGCGCACACCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * ** * *
4791890 GACAATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAG
774 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
* * * * *
4791955 TATGTGCTGCTGCAACCCTCAGTCCAGTCGATCTGAGACTGGGAATGAATTCCGTATG
839 CATGTGCTGCTGCAACCCTCGGTCCGGTCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
4792013 CTTAGATTGGGAATGAACTCCACATGCC-AAGTCAACCCACGAACCGAGCATACGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
**** * * * **
4792077 CAATGAAAGGGGCGGGATGAGTAAGTCGGGGATTGACCGGGTCCCCCTCTATGTGCTACCGATCC
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATTGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* *
4792142 TACTGCTGCAACCCTCAGTCCGGT-TCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
131 TACTGCCGCAACCCTCAGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
4792206 ACCGACGAAACAAGCGGCGGGCGGGCTGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAA
195 ACCGACGAAAC--G-GGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * ***
4792271 GCCGTGGATCAATAGGGTGGTAGGTGGGCTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
4792336 TTTTTATGGCTTGTAAATTCATACATTGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGAT
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
4792401 GACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTTCCGTTCGGGATTTTTTAAAATTTTTT
387 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * * *
4792466 CAGAAAGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAA
452 CGGAAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC--AA
* * *
4792531 AAAAAATCAGCTAAAAATTCGAAGTGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
514 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
4792596 TCAGACACTTTAATGGCTACTTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
579 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
4792661 AGTTCTCTAGGTTTGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAT
644 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
4792726 ATCATGTGCGCACACCCCCCGGGGCCGCCGATCGCCGGAACCGCAATGCCGCCGGTCAGGTTCTC
709 ATCATGTGCGCACACCCCCC-GGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * *
4792791 CGACGATGCTCCGGCGATGGTGCCTCGACAAAGACAAATACGGTACCAGCACATGCCCGAGCCCA
773 CGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
* *
4792856 GCATGTGTTG-TCGCAA-CC-C--T-AGGTC---C----A----G--T---CT--G-AT-
838 GCATGTGCTGCT-GCAACCCTCGGTCCGGTCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
4792890 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * * * * *
4792955 CGGCGAGAGGGGTGAGATGCGCAAGCCAGGGA-TCAGTCGGGTCCCCCTCTGCGTGCTGCCAATC
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATTGA-CCGGGTCCCCCTCTGCGTGCTACCGATC
* * * *
4793019 CTACTGCCACAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
4793084 ATCGATGAAA----CGAGCGGGTGAGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCC
195 ACCGACGAAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * **
4793145 GTGGATCGATAGGGTGGTATGTGGGTTTAGGCATATCTTCATATTTCTGTGTGCCAATGCCATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
** *
4793210 TTATGGCTTGTGGATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAGGGCAAGACGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
4793275 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
390 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* * *
4793340 AAGCATTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
455 AAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * *
4793405 ATCAGCTAAAAACTCGAAGTGTGCAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTAGA
519 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
4793470 CACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAGATGCTCTTTAAGGGGGTGTGAGTTT
584 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * *
4793535 TTGAGGTTTGATGAGGGATATGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
649 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
4793600 GTGCGCACACCCCCCTCGGCCCCCCGATCGTCAGAACCCTAATGCTGTCGGTCAGGTTCTCCGAC
714 GTGCGCACA-CCCCC-CGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
** *
4793665 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACTTGCCCGAGCCCAGCAT
777 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* ** * * * *
4793730 GTGCTACCACAACCCTCGGTCCGGTCGGATCGTAGATTGGGAATGAACTCTGTAGG
842 GTGCTGCTGCAACCCTCGGTCCGGTC-GATCTTAGACTGGGAATGAACTCCGTATG
* * *
4793786 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTTAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * *
4793851 CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCACCTCTACGTGGTGCCGATCC
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATTGACCGGGTCCCCCTCTGCGTGCTACCGATCC
** * * *
4793916 TGTTGCCGCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCTAA
131 TACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * **
4793981 CCGATGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGGCAAGATGCGCAA
196 CCGACGAAAC--G-G-GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* **
4794046 GCCGTCGAT-GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
4794110 TTTTTTATGTCTTGTAAGTTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGA
322 -TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
4794175 CGACTCGTTTTCTATTTTTCATGATTTTTGAAAC-TTTTGCGGTTTGGGATTTTTTAAAATTTTT
386 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* * *
4794239 TCGGAAGGATTTTTGGCCCAAAACTTGGTACATGTGATCCTTGTATTTTTGTTGGCATGCACAAA
451 TCGGAAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
4794304 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
515 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
4794369 CAAACACTTTAATGGCTACTAGCAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
580 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
4794434 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
645 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
4794499 TCATGTGCACACACCCCCCGGCCCCCCCGATCGTCGGAAACCCCAATGCCGCCAGTCAAGTTCTC
710 TCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGG-AACCCCAATGCCGCCGGTCAGGTTCTC
* * * *
4794564 CGACGATGCTCTGGCGATGTTGCCCCGACGAAGAAAAATACGGCACTAGCACATGCTCGAGCCCA
773 CGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
* * *
4794629 GCATGTGCTGCTCCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
838 GCATGTGCTGCTGCAACCCTCGGTCCGGT-CGATCTTAGACTGGGAATGAACTCCGTATG
* * *
4794689 CTTAGATTGGGAATGAACTCCATATGCCTATGTCAACCCACGAAACGAGCGTGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * ** * * **
4794754 CGGCCAGAGGGGCGGGATGCGCAAGCCTGGGATCGGTCGGGTCCCCCTCTGCATGGTGTCGATCC
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATTGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * * * * * *
4794819 TACTACTGCAACCCTCATTCTGATCTGATCTTGGACTGGGAATGCACTCCATATGCATAAGCCAA
131 TACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
4794884 CCGATGAAACGGGAGGGCGAGCGGGCAGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAA
196 CCGACGAAAC----GGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
4794949 GCCGTGAATCGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATATTTTTGTC-TGCCAATGCC
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-CATGCCAATGCC
4795013 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
4795078 CGACTCGTTTTCTATTTTTTAGGATTTTTGAAACTTTTTTCCGTTTGGGATTTTTTAAAATTTTT
386 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* * * *
4795143 TCGGGATGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTAGTTTTGTTGGCATGCACAAA
451 TCGGAAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * * *
4795208 AAAAATCAGCTAAAAAATCGATGTGTGCAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
515 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
4795273 CAGACACTTTAATGGCTACTGGGAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGA
580 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
4795337 GTTCTCGAGGTTTGATGAGGGATACGGGGCCAATATAAGGCCCAAGTACCAGCACCCATCACACA
645 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
4795402 TCATGTGTGCTCACCCCTCGGCCCCCCGATCGTC-GAACCCCAATGCCGCCGGTCAGG-T-T---
710 TCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * *
4795461 -C--T--T-CGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGC
775 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
* * * * * * *
4795520 ATGTGCTGTTGCAACCCTCGGTCTGATCCGATCTAAGACTGAGAATAAAGTCCGTATG
840 ATGTGCTGCTGCAACCCTCGGTCCGGT-CGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
4795578 CTTAGACTGGGAATGAACTCCATATCCCGAAGTCAACCCACAAAACAAGAGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * * * *
4795643 CAGCCAGAGGGGCGAGATGCGTAAGCCGGGGTTTGGCTGGGTCCCCCTCTGCGTGCT-CCGATCT
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATTGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * ** * *
4795707 TGCTACTAGAAACCTCTTGGTCTGGTCTGATCGTAGACTGGGAATGAACTCCGTATGCCTAAGCC
131 TACTGC-CGCAACC-CTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
4795772 AACCGACGAAACGAGCGGGCGGGCGGGGCGGGCACTACGCCGACCAAAGAGACGGGATGCGCAAG
194 AACCGACGAAACGGGCGGGCGGGC-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
*
4795837 CCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
258 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
4795902 TTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACG
323 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* ** * * *
4795967 ACTCATTTTCTATTTTTCACGATTTTCAAAACATTTTGTGGTTTC-GGATTTTTCAAAATTTTTT
388 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGG-TTCGGGATTTTTTAAAATTTTTT
* *
4796031 CAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGCATTTTTAG-TGGCATGCACAAA
452 CGGAAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-GTTGGCATGCACAAA
4796095 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
515 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * * *
4796160 AAGACACTTTAATGGCTATTGGCAGCAAACCTATAAAATCTCGAATGCTCTTTACGGGGGTCTGA
580 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
4796225 CTTCTCGAGGTTTGATGAGGGTTAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
645 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
4796290 TTATGTGCGCACACCCCCAGCCCCCCCGATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTCCG
710 TCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* *
4796355 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCAAGC
775 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
* * *
4796420 ATGTGCTGCCGTAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTTCGTATG
840 ATGTGCTGCTGCAACCCTCGGTCCGG-TCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
4796478 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCATACGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * *
4796543 C-GACAAGAGGGGCAGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATC
66 CGGCCAA-AGGGGCGGGATGCGCAAGCCGGGGATTGACCGGGTCCCCCTCTGCGTGCTACCGATC
* * * * * * * *
4796607 CTACTGCCACAACCCTCCGTCTGATCTAATCTTAGACTGTGAATGAATTTCCGTATGCCTAAGTC
130 CTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAA-CTCCGTATGCCTAAGCC
* * ** ** * * * * *
4796672 AACCCACGAAA----TGATCATGCAGGC--GCTC-A-GCCAGCCAGAGAGGCGGGATACGCAAGC
194 AACCGACGAAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * ** * * * * * * *
4796729 CGGGGATCGGTCGGGTCCCCCTCTGCGTGCTTCCGATCTTGCTACCGCA-ACCCTCAGTCTGGTC
259 CGTGGATCGATAGGGT---GGT-AG-GTG-----G--GTT--TA-GGCACATCTTCA-TAT-TTC
** * **** * * * * ** * *** * ***
4796793 TG-AT-CTTA-GAC-TGGGAATGAACTCCGT--ATGCCTAAGCCAACCGACGAAATGAGCGGGCG
307 TGCATGCCAATGCCATTTTTATG-GCT-TGTAAATTCAT-A--CAATGGTC-CCTTAAGCCTTC-
* * * ** ** *** * *** ** *** * *
4796852 GGCGGGAACTACGCA-GGCCAGAGA-GACGGGATGCGCAAGCCGTGGATCGATAGGGTG---GTA
365 -ACGTGAAGT-TTCATGG-CA-AGACGACTCG-TTTTCTA-TTTTTCA-CGAT-TTTTGAAACTT
** * * ** * * * ** * *** *
4796912 GGT-CGGTTTAGGCACATCTTCATATTTTTGGGTGCCAATGCCATTTTTATGGCTTGTAAA-TTC
422 TTTGCGG-TTCGGGATTTTTTAAAATTTTTTCG-G--AA-G-GA--TTT-TGGC-CCCAAACTTG
* * * * * * * * ** **
4796975 ATACA-ATGGTCCCT-TA--------AGCCTTCACATGAAGTTTCATGGC-AAGACAACTC---G
477 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA--GCTAA-A-AACTCGAAG
* * * * * ** *** *** * * *
4797026 TTTTCTA-TTTTTCATGA-TTTTTGAAACTTTTTGTGGTTCAAGATTTTTTA-AAATTTTTTCGG
538 TGTACAAGATTTT-GTGACCATTTGAAA---AAAGT-G-TCCCCA--TTTCAGACA--CTTT---
* ** * ** * ** ** * ** ** **
4797088 AA-GGAGTTTTGACCCCAAACTTGGTAGACGTGCTC-CGTG-TATTTTTGTTGGCATGCA---CA
590 AATGG-CTACTGGCAGCAAACCT-GTA-AAAT-CTCAAATGCTCTTTAAGGGGGTGTG-AGTTC-
*** ** * * * *** * * ** * ** * * * **
4797147 AAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC-CCCA
649 TCGAGGTT-TGATGAGGGAT--AGGGGGCCAATA-TAAG-GGCCA--AG-TACCA--G-CACCC-
* * * * *** * *** ** * *
4797211 AT-TCAGATACTTTAGTG-GC-TA-CTGGCAGCAAACC--T-GT-AAAATCTCAAATGCTCTTTA
702 ATCGCACAT-C-AT-GTGCGCACACCCCCCGGCCCCCCGATCGTCGGAA-CCCCAATGC-C----
** ** * * * * ** ** * ** ** *
4797268 AGGGGGTGTGAGTTCT-CAAGGTTTGATGAGG-GATAGG-GGGCCAATATAAGGGCCAATTAC--
758 -GCCGGTCAG-GTTCTCCGACG-ATGCTCCGGCGAT-GGTGCCCCGA-CGAA--GAAAAATACGG
* * * * * * *** * *
4797328 CAGCA-CCCAT---C--GCACATCATGTGC-GC-AC-ACCCCCTGG-CCCCCCGATCGTCGAAAC
816 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTC-GGTCCGGTCGATC-T-TAGAC
*** * * *
4797383 -CCCAAT-ACCGTCGGTCAGGTT
878 TGGGAATGAAC-TCCGT-A--TG
* * * * *** *
4797404 CTCAGAC---G-ATG--CTCCGACGATG-GT--G-C--CCC-GGCAAA-GAAAAATGC-AGCAC-
1 CTTAGACTGGGAATGAACTCC-A-TATGCCTAAGTCAACCCACG-AAACG-AGCGTGCGGGCACT
* ** ** * * * ** ** * * ***** *
4797453 CAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGG-TCTGGTCTGATCTTAGACTGGG
62 CAGC-C-GGCCAAAG--GGGC--GGGATGC-GCAAGCCGGGGAT-TGACCGGGTCCCCCTCTGCG
* * ** * * * * * ** *
4797517 AATGAAC-CCCG-TACGCTTAGACTG--GGAATGAACTCCGTAC-GCCTAAGTC-AACCCAT-GA
119 --TG--CTACCGAT-C-C-T--ACTGCCGCAA--CCCTCAGTCCGGTCTGA-TCTTAGAC-TGGG
* * ** * * ** * ** *
4797575 AACGAACGTGCGGGTG-CTCAG-CAGGCC-A-G-AA-GGGCAGGATGTGCAAGCTGGGGA-T-CG
171 AATGAAC-TCCGTATGCCTAAGCCA-ACCGACGAAACGGGC-GGGCGGGCGGGC-GGGCACTACG
* * *** **** * * ** * * * ** * *
4797632 ACTG---G-GTCCCCCTCTGCG--TGCTGCT-GA-CCCTACTGCTGCATACCTCGGTCT-GGTC-
232 CCGGCCAGAGAGACGGGATGCGCAAGCCG-TGGATCGATA-GGGTG-GTAGGTGGGTTTAGG-CA
* *** * ***** * * ** ** **
4797687 CAATCTT-AGACTGGAATGAACT-CCATATGCCTAAGCCAACCGAC--G-AAACGAGCGGACGGG
293 C-ATCTTCATA-T-TTCTGCA-TGCCA-ATGCC-ATTTTTA-TGGCTTGTAAA--TTCATAC-AA
* * * ** * **
4797747 TGGGCAC-TACGTCCGCCA-GAGAGACG--GGATGCGCAAG-CTGTGGA-TCGATAGGGTGATAG
348 TGGTCCCTTAAG-CCTTCACGTGA-A-GTTTCATG-GCAAGAC----GACTCG-T----T--T--
** ** * * ** **** *
4797806 GTCGGTTTAGCCAC-ATCTTT-ATA-TTTCTGCATGCCAATTCCATTTTTATGGCTTATAAATTC
396 -TCTATTT-TTCACGATTTTTGAAACTTT-T---TG-CGGTTCGGGATTT-T---TTA-AAATTT
* * * * ** * * * * *
4797868 ATAC-TATGG-TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC--GACTCGTTTTCTATTT
449 TTTCGGAAGGAT---TTTGGCC--C-C---AA---ACTTGG-TAGACGTGA-TC--CTTGTATTT
** **** *** * **** ** * *
4797929 TTCAT-G-ATTTTTAAAACTTTTTACGGCTCGAGATTTTTTAAAGTTTTTTCGAAAGGAGTTTTG
498 TTGTTGGCATGCACAAAA-AAATT-CAGCT--A-AAAACTCGAAG--TGTAC--AA-GA-TTTTG
* * ** * * ** ** * **
4797992 -GCCCCAAACTTGGTAGACGTGAT--CC--TT--GTA-TTTTTGTTGGC-A-TGCACAAAAAAAT
552 TG-ACC--ATTTGAAAAAAGTG-TCCCCATTTCAG-ACACTTTAATGGCTACTG-GC-AGCAAA-
* * * * ** **** ** * **
4798047 TCAGCTAAAAACTCAAA-G-TGTAAAAGATTTTGTGA---C-C-A--TTTGAAAAAAGTCTCCCC
609 CCTG-TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG-ATGAGGGAT----
**** * * * * * * ** * * * ** * ** *
4798103 ATTTCAGACACTTTAATGG-CTACTGGCAGCAAACC-T-GTAAAATCTCAAATGCTCTTTA---A
668 A-GGGGGCCAATATAAGGGCCAAGTACCAGC-ACCCATCG-CACA--TCATGTGCGC-ACACCCC
** ****** * ****** * *** * ** *
4798162 AGGGGTGTGAGTTC-TC-GAGGTTTGATG-AG--GGAT-AGG-GGGCC-A--AT-ATAAGGGCCA
727 CCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGG-TCAGGTTCTCCGACGATGCT-CCGGCGA
* * * * * * * * * ** * *
4798216 -AGTACCAGAACCCATCGCACATAAAGTGC-GCA-CA-CCCA-CCCCG-GCCCCCCCA-AT-C-A
790 TGGTGCC----CCGA-CGAAGA-AAAATACGGCACCAGCACATGCCCGAG-CCCAGCATGTGCTG
* * ** * * * *
4798272 CCGGAACCC-CAATGCC-GTCGGTC--AGGTTCTCCGGCG-GTG--CTTCGGTGATG
848 CTGCAACCCTCGGT-CCGGTCGATCTTA-G-ACT--GG-GAATGAAC-TCCGT-ATG
* * * * * * * * *
4798322 -GT-GCCCCGGCAAAGAA----AAATGCAGC-ACCAG-CACATGCCCATG--CCCAGCATGTGCT
1 CTTAG-ACTGGGAATGAACTCCATATGC--CTA--AGTCA-A--CCCACGAAACGAGC--GTGC-
** * * **** * ** *** * *
4798377 GCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAAT--GCACTCCATATGCTTAGACTGGGA
55 G-GGC-A--CTCAG-CCGG-C-CA-AAGGGGC-GGG-ATGCGCAAGCC-GGGGATT-GACCGGG-
* ** * * * * ** * * ** *
4798440 ATGAACTCTGTATGCCTAAGTCAACCCA-CAAAACGAGCGTGCGGGCACTCAGTCGGCCAGAGGG
107 -T---CCCCCTCTGCGT--G-CTACCGATC-CTAC-TGC-CGC-AACCCTCAGT---CC----GG
* * ** * * * * * * *
4798504 GCGGGATGCACA-AGCCGGGGATCGACCGAGTCCCCCTCTATGTGCT-A-CCGATCCTGGTGTCG
154 TC-TGAT-CTTAGA-CTGGGAAT-GA---A---CTCC-GTATG-CCTAAGCC-AACC----GACG
* *** *** * ** ** ** ** *
4798566 TAACCCTCAATCCGGTCTGATCTTAG-ACTGGGAATGAACTCCATAAACCTA-AGCCAACCAACG
202 AAACGGGC-GGGCGGGC-GGGC-GGGCACT--AC--G----CC---GGCC-AGAG---A--GACG
** * * * ** *** *** * **
4798629 AAACGAGCGAGCGGCCG-GGCACTACGCCAGCCAGAG-AAACGGG-AT-GCGCAAGCCATGGATC
247 GGATGCGC-A--AGCCGTGG-A-T-CGATAGGGTG-GTAGGTGGGTTTAG-GC-A--CAT-CTTC
* ** **
4798690 GATAAGGGGGTAGGTGGGTTTGGGCTC-AT-CTTCATATTTCTGCATGCCAATGCCATTTTTATG
300 -AT-A-----T--TTCTGCAT--GC-CAATGC--CAT-TTT-T--ATG-----G-C-----T-TG
* * *
4798753 CCTTATAAATTCATACAATGGTCCCTTAAGCCTTTAGGTGAAGTTTCATGGCAAGACAACTCGTT
335 -----TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* ** * * *
4798818 TTCTTTTTTTCACGATTTTCAAAACTTTTTTCGGTTCGGGATTTTTCAAAATTTTTT-TGAAGGA
395 TTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* *
4798882 GTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
460 -TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* *
4798947 CTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTT-TAAAAAGTGTCCCCATTTCAGACACTT
524 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * **
4799011 TAATGGCTATTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT-AGGGGGTGTAAGTTCTTAAG
589 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * *
4799075 GTTTGATGAGGGTTAGGGGGCCAATATAAGCGCCAAGTACCAGCACCCATCGCACATTATGTGCG
654 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * *
4799140 CACACCCCCCCCGGCCCCCCCGATCATCGGAAACCCAATGTCACCGGTCAGG---T-------T-
719 CACA--CCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* ** *
4799194 CTCCGGCGATGCTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCAAGCATGTGC
781 CTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * * * *
4799259 TGCCGCAACCTTTGATCCAGTCCGATCTTAGACTGGAAATGAACTCCATATG
846 TGCTGCAACCCTCGGTCCGGT-CGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * ** *
4799311 CTTAGACTAGGAATTAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCAAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * ** ** ** *
4799376 CGGCCAGAA-GGGTGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTATGTGCTGTCAATC
66 CGGCCA-AAGGGGCGGGATGCGCAAGCCGGGGATTGACCGGGTCCCCCTCTGCGTGCTACCGATC
* * * * *
4799440 TTGCTGCCGCAACCCT-TGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
130 CTACTGCCGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * **
4799504 AACCGACGAAACGAGCGGGCAGGCGGGCGGGCACTATGCTAGCCAGAGAGACGGGATGCGCAAGC
194 AACCGACGAAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * *
4799569 CATGTATCGATAGGGTGGCAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATT
259 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * * * *
4799634 TTTATGGCTTGCAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTCCATAGCAAGATGA
324 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
4799699 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACTGTTTGGGATTTTTTAAAATTTTTTCG
389 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
* * *
4799764 GAAGGGGTTTTGGCCCCAAACTTGGTAGTCGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAA
454 GAA-GGATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
4799829 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
518 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
4799894 ACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
583 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
4799959 CTCGA-GTTTGGATGAGGGGTAGGGGGCCAATATAAGGGCCAAGTACCAGGACCCATCGTACATC
648 CTCGAGGTTT-GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
4800023 ATGTGCGCACACCCCCTCCGGCCCCCCCGAACGTCAGAACCCCAATGCCGCCGATCAGGTTCTCC
712 ATGTGCGCACA-CCCC-CCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
** * * * * ** *
4800088 GGTGATGCTCTGGTGATGGTGCCCTGACAAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAG
774 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
* * * *
4800153 CATGTGCTGCCT-TAACCTTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
839 CATGTGCTG-CTGCAACCCTCGGTCCGGTC-GATCTTAGACTGGGAATGAACTCCGTATG
* * * ** * ** * * *
4800212 CCTGGACTGGGAATGAAGTCTGTATGCCTAAGTCAACTCATAAAATGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * * * * *
4800277 CGGCCAGAGGGGGGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTACCTGCTGCCAATCC
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATTGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * ** * * *
4800342 TACTACCGTAACCCTTGGTCCGGTCAGATCTTAGACTGGGAATGAACTCCATATCCCTAAGCCAA
131 TACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
4800407 CCGACGAAACAAGCGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGTGATGCGCAA
196 CCGACG--A-AA-CGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
4800472 GCCGTGGATCGATAGGG-GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * * * *
4800536 TTTTTATGCCTTATAAATTCATACAATGGTCCCTTAAGCCTTGAAGTGAAGTTTCATGGCAAGAT
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** * * * *
4800601 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTTGTTTC-AGATTTTTTTAAATTTTT
387 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG-CGGTTCGGGATTTTTTAAAATTTTT
* * * * *
4800665 TTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCGCAAA
451 TCGGAAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
4800730 AAATTTCAGCTTAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTGCCCATTT
515 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * ** *
4800795 CGGGCACTTTAATGGCTACTGGCAGCAAAGTTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGA
580 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
4800860 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
645 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
4800925 TCATGGGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATACCGCCGATCAGGTTCTCTG
710 TCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
*** * * * * * *
4800990 ACGATGCTCCAAAGATGGTGCCCTGATGAAGAAAAATGCAGCACCAGCACATACCCAAGCCCAGC
775 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
4801055 ATGTGCTGCTGCAA-CC-C--T-C-G--G-TC-----C---------A-TCCG-AT-
840 ATGTGCTGCTGCAACCCTCGGTCCGGTCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
4801086 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * ** * *
4801151 CGACCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCTTCTGCGTGCTGCCGATCC
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATTGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * ** * * ** * *
4801216 TGCTGCTGCAACCCTTGGTCCAGTCTAATCTTAGACTGGGAATGAACTCTATATGCCTACGCTAA
131 TACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
4801281 CCGACGAAACGAGCAGGCGGGCGGACGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGTAA
196 CCGACGAAAC--G--GGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
4801346 GCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATCTCTACATGCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
4801411 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCGTCACGTGAAGTTTCATGGCAAGAC
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * ** * *
4801476 GACTCATTTTCTATTTTTCAGGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
387 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * * * *
4801541 CGGATGGAGTTTTGGCCCCAAACTTGGTAAACGTGATCTTTGTATTTTTGTTGGCGTGTACAAAA
452 CGGAAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
4801606 AAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACGATTTGAAAAAAGTGTCCCTATTTC
516 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
4801671 AGACACTTTAATGGCTACGGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
581 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
4801736 TTGTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
646 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * ** * *
4801801 CATGTGCGCACACCCCCTGGCCCCCCCGATCGCCGGAACCACAATGCCGTTGGTCCGGTTCTCCA
711 CATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * ** * *
4801866 ACGATGCTCCAGCGATGGTGCCCTGGCGAAGAAAAATGTGGCACCAGCAGATGCTCGAGCCCAGC
775 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
* *
4801931 ATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTATAGTGGGAATGAACTCCGTATG
840 ATGTGCTGCTGCAACCCTCGGTCCGGT-CGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
4801989 CTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * * * *
4802054 CGGCCAATGGGGCGGGATGCAG-AAGTCGACGG-TCGGCCGGTTCCCCCTCTGCGTGCTGCCAAT
66 CGGCCAAAGGGGCGGGATGC-GCAAGCCG-GGGATTGACCGGGTCCCCCTCTGCGTGCTACCGAT
* * * * * *
4802117 CCTGCTACTGCAACCCTCAGTTCGGTTTGATCTAAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CCTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
4802182 AACCGACGAAACGAGCGGGCGGGTGGGCGGCTGGGCACGACGTCGGCCAGAGAGACAGGATGCGC
194 AACCGACGAAACGGGCGGGC-GG-GCG-GGC-GGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
4802247 AAGCTGTGGATCGATAGGGTGGTAGGTGTGTTTAGCCACATCTTCATATTTCTGCATGCCAATGC
255 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * *
4802312 CATTTTTATGGGTTGTAAATTCATACAATGGTCCTTTAATCCTTCAC-----G-----T-----G
320 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* **
4802362 A-G----G-TTTC-A----T---GATTTTTGAAACTTTTTGTGGTTTAGGATTTTTTAAAATTTT
385 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * * *
4802413 TTTGGAGGGAGTTTTGTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTACAA
450 TTCGGAAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
4802478 AAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTACCCATT
514 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
4802543 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-TTTGAAAGGGGTGT
579 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGT
4802607 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
643 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
4802672 CATCTTGTGCGCACGCCCCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
708 CATCATGTGCGCA--CACCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * ** * * * *
4802737 CTCCGATGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGTGACACTAGCATATGCTCGAGC
770 CTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
* * * * * *
4802802 CCAGCATGTGCTG-TCGTAACCCTTGATCTGGTCTGATTTTAGACTGGGAATGAACTTCGTATG
835 CCAGCATGTGCTGCT-GCAACCCTCGGTCCGGTC-GATCTTAGACTGGGAATGAACTCCGTATG
* * * *
4802865 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCCCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * ** * * * ** * *
4802930 CGGCCAGAGGGGCGGGATGTGCAAGCCACGGA-TCAGTCGGGTCACCCTCTATGTGGTGCCGATC
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATTGA-CCGGGTCCCCCTCTGCGTGCTACCGATC
* * * * * *
4802994 TTGCTACCGTAACCTTCAGTCTGGTCTATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
130 CTACTGCCGCAACCCTCAGTCCGG----TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
4803059 GCCAACCGATGAAACGAGCGGACGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
191 GCCAACCGACGAAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
4803124 AGACGTGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTGCATGCCAATGCT
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
4803189 ATTTTTATGGCTTGTAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
4803254 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACATTTTGCGGTTCGAGATTTTTTAAAATTTTT
386 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* ** ** * * *
4803319 TC-GAATTGAGTTTTGTACCCAAACTTTTTAGACATGATTCTTGTATTTTTATTGGCATGCACAA
451 TCGGAA-GGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
4803383 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
514 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
4803448 TTAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
579 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
4803513 ATTTCTCAAGGTTTGATGAGGGATAGGGGGTCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
644 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * *
4803578 ATCTTGTGGGCTCAACCCCCCGGCCCCCCGA-CGTCGAAACCCCAATACCGTCGGTCAGGTTCT-
709 ATCATGTGCGCAC-ACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * *
4803641 C-ACG-TGCTGCC-GCGATGGTGCCCCCGA-AAAGAAAAATGCAGCACCAGCACATGCCCGAGCC
773 CGACGATGCT-CCGGCGATGGTG-CCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
* * * * *
4803702 AAGCATGTGCTGC-G-AA-CCTC-GT-CTG-C-TTC-T-GAGTTGGAAT---CT---TA-G
836 CAGCATGTGCTGCTGCAACCCTCGGTCCGGTCGATCTTAGACTGGGAATGAACTCCGTATG
* * **
4803747 CTT-GACTGGGAATGAACTCCGAT-CGCCTAAGTCAACCCACGAAA-TAG-GTGCGGGTGCTCAG
1 CTTAGACTGGGAATGAACTCC-ATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * * * * * *
4803808 TCGGCCAGAGGGGCAGGATGCGCAAGCTGCAGGATCG-TCGGGT-CCCCTCTACATGCTGCTGAT
65 CCGGCCAAAGGGGCGGGATGCGCAAGCCG-GGGATTGACCGGGTCCCCCTCTGCGTGCTACCGAT
* * *
4803871 -C--CTGCTGCAACCATC-GTCC--TC--ATCTTAGACTGGGAATGAACT-CAT-TGCCTAAAGC
129 CCTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT-AAGC
* * * * * *
4803926 CAACCGACGAAACGAGCAGGCGGGCAGCGG-GCGGCACTATGTC-GCCAAAGAGAC-GGTTGCGC
193 CAACCGACGAAACGGGCGGGCGGGC-G-GGCG-GGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * *
4803988 AAGCCGTGGATCGATAGGGTGGTAGGT-TGTTTAGGCACAT-TTCACATTTCTGAATACCAATGC
255 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
4804051 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
320 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
4804116 ACGAATCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
385 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * * *
4804181 TTCGGAAGGGGTTTTGGCCCCAAACCTGGTAGACGCGATCCTTCTATCTTTT-TTGGCATGCACA
450 TTCGGAA-GGATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACA
*
4804245 AAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
513 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
4804310 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
578 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
4804375 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
643 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
4804440 CACCATGTGCGCACACTCCCCCCCCGCCCCCTGATCGACGGAACCCCAATGCCGTCGGTCAGGTT
708 CATCATGTGCGCACA---CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * * ** * *
4804505 CTCCGGCGATGCACCGGTGATGGTG-CCCGGTGAAGAAAAATGCGGCACCAGCACATGCTCGAGC
770 CTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
* * * *
4804569 CCAGCATGTGCTG-TGTAACCCTCAGTACGGTCCGATCTTAGACTAGGAATGAACTCCGTATG
835 CCAGCATGTGCTGCTGCAACCCTCGGTCCGGT-CGATCTTAGACTGGGAATGAACTCCGTATG
* * * * **
4804631 CTTAGACTGCGAATGAACTCCGTATGCCTAACTCAACCCACAAAACGAGCGTATGGG-AGCTTC-
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCA-C-TCA
* ** * * * * * * * * *
4804694 GCCGGCCAGAGGGGTAGGATGTGCAAGTCTGGGATCGGCCGGGTCCCCCTTTACGTGTTGCCGAT
64 GCCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATTGACCGGGTCCCCCTCTGCGTGCTACCGAT
* * * * *
4804759 CCTGCTGCCACAACTCTC-GATCTGGT-TCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAG
129 CCTACTGCCGCAACCCTCAG-TCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
4804822 CCAACAGACGAAATGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
192 CCAACCGACGAAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* **
4804887 GTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * * *
4804952 TTTTTATGGTTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGAT
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
4805017 GACTCGTTTTCTATTTTTCACAAATTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
387 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * *
4805082 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTATAGGCATGCAGAA
452 CGGAAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT-T-GGCATGCACAA
* * * *
4805147 AAAAAGTCAGCTAAAAACTTGAAGTGTAAAAGATTTTGTGACCATATGAAAAAAGTGTCCCCATT
514 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
4805212 TCAGGCACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC-AATGCTCTTTAA-AGGGTGTG
579 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
4805275 AGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAG---CC--C-C-C
644 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
4805333 --C-----CG---A----TC-G-----C---C--C-GAACCCCAATGCCGCCGGTCAGGTTCTCT
709 ATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
** * * * ** *
4805372 GGTGATGCTCCGACGATGGTGCCCCTATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAA
774 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
* *
4805437 CATGTGCTG-TCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
839 CATGTGCTGCT-GCAACCCTCGGTCCGGTC-GATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
4805496 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * ** ** **
4805561 TGGCCAAAGGGGCTGGATGCGCAAGCCCGGGATCGATTGGGTCCCCCTCTGCGTGCCGCTAATCC
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATTGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* ** * * ** *
4805626 TGCTGTTGCAA-CCT-GGTCGGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAC
131 TACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ***
4805689 CCGATGAAACGAGGGGGCGGGCGGGCGGGCAGGCACTACGCCGATGAGAGAGACGGGATGCGCAA
196 CCGACGAAAC----GGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
4805754 GCCATGGATCGATAGGGTGGTTGGTGGGTTTAGGCACA---TC-----T-T-C--G----T---A
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
4805800 --TTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGAC
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
4805863 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGAGATTTTCTAAAATTTTTT
387 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* *
4805928 TGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAT
452 CGGAAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
4805993 AAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTA
516 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
4806058 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAATATCTCAAATGCTCTTTAAAGGGGTGTGAG
581 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * * *
4806123 TTTTCAAGGTTTGATAAGGGATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCGTACAT
646 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * *
4806188 CATGTGCG--CACCCCCTGCCCCCCCAATCGCCTGAACCCCAATGCCGTCGGTCAAG-T-T----
711 CATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* * * * *
4806245 C--T-CT--GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCTGCAAATGCCCGATCCCAACA
776 CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
* *
4806305 TGAT-CTG-TCGCAACCCTCAGTCCGGTCCGATCTTAGAATGGGAATGAACTCCGTATG
841 TG-TGCTGCT-GCAACCCTCGGTCCGGT-CGATCTTAGACTGGGAATGAACTCCGTATG
* * * * ** *
4806362 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCATGAAATGAGCGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * * * * **
4806427 CTGCTAGAGGGACAGGATGCACAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATTGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * * * *
4806492 TGCTACTGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAG
131 TACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * *
4806557 TTGACGAAA----CGAGCGGGCAGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
196 CCGACGAAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
4806618 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
*
4806683 TATGGCTTGTAAATTCATACAATTGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
326 TATGGCTTGTAAATTCATACAA-TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * ** * *
4806748 TCGTTTTCTACTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGGTTTTTTAAAATTTTTTCGG
390 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
* * * * *
4806813 AAGGAGTTTTGGCCCCAAACATAGTAGACGTGAACCTCGTATTTTTTTTGGCATGCACAAAAAAA
455 AAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * *
4806878 TTAAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAATGTGT-CCCATTTCAAA
519 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
4806942 CACTTTAATGGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
584 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * * *
4807007 TCAAGGTTTGATGAGGCATAGGGGGCCAATGTAAGGGCCAAGTGCCAGCACCCATTGCACATCAT
649 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *
4807072 GTGCACACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
714 GTGCGCACA-CCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* * * * * * *
4807137 GATGCTCCGGTGATAGTGTCCC-AGCGAAGAAAAATGCAGCACCAGCACATGCCCAAGCCTAGCA
777 GATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
** * * **
4807201 TGTGCTGCCACAAGCCTCGGTCCGATCCGATCTTAGGTTGGGAATGAACTCCGTATG
841 TGTGCTGCTGCAACCCTCGGTCCGGT-CGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
4807258 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGG
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
** * * * * *** * * * * *
4807323 CAACCAGAGGGGCGGGATGTGCAAGCTGGGGATCGGTTGGGTCACCCTCCGCATGCTACCAATCT
66 CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATTGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* ** * ** ** *
4807388 TGCTGTTGCAACCCTCGGTTTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
131 TACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
4807453 CTGACGAAACGAGCGGGCGGGCGAGCGGATGGTCGAGCACTATGCCGACCA-AGAGACGGGATGC
196 CCGACG-AA--A-CGGGCGGGCGGGC-G--GG-CGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * ***
4807517 GTAAGCCGTGGATCGA-ACGGGTGGTAGGTGGGTTTAGGCTCATCTTCATATTTCTATGTGCCAA
253 GCAAGCCGTGGATCGATA-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* *
4807581 TGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTGATGGC
317 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
*
4807646 AAGACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTGCGGTTCGGGATTTTTTAAAAT
382 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAAT
* * *
4807711 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGTATGCA
447 TTTTTCGGAAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
*
4807776 CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
511 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * * *
4807841 A-TTCTAAACACTTTATTGGCTAATGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGG
576 ATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
4807905 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAAT
640 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC-AT
* * * * *
4807970 -GCACATCATGTACGCAAACCCCCCGCCCCCCCGATCGCCGGAACCCCAATACCGCCGGTCAGGT
704 CGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* *
4808034 TCT-C--C-A---T----CGATGGTGCCCC-AGTGAAGAAAAATACGGCACCAGCGCATGCCCGA
769 TCTCCGACGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATACGGCACCAGCACATGCCCGA
* * *
4808087 GCCCAGCATGTGCTG-TCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTTCGTAT
833 GCCCAGCATGTGCTGCT-GCAACCCTCGGTCCGGTC-GATCTTAGACTGGGAATGAACTCCGTAT
4808151 G
896 G
* * * *
4808152 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGGAACGAGCGTGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * ** * *
4808217 TGGCC--AGGAAGGTGGGATGCGCAAGTCGGGGATCGATTGGGTCCCTCTCTGCATGC-AGCCGA
66 CGGCCAAAGG--GGCGGGATGCGCAAGCCGGGGATTGACCGGGTCCCCCTCTGCGTGCTA-CCGA
* * * * * * ** * * * *
4808279 TCTTGCTGCCACAACCATCGGTTCGGTCCAATCTTAGATTAGGAATGAATTCCGCATGCCTAAGC
128 TCCTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
*
4808344 CAACCGATGAAAC
193 CAACCGACGAAAC
4808357 AACCGGGTGT
Statistics
Matches: 13852, Mismatches: 2462, Indels: 1866
0.76 0.14 0.10
Matches are distributed among these distances:
844 108 0.01
845 13 0.00
846 220 0.02
848 1 0.00
849 2 0.00
851 2 0.00
853 1 0.00
855 2 0.00
858 1 0.00
859 1 0.00
860 78 0.01
861 1 0.00
862 1 0.00
863 478 0.03
864 81 0.01
865 224 0.02
866 278 0.02
867 102 0.01
868 102 0.01
869 212 0.02
870 116 0.01
871 285 0.02
872 6 0.00
873 3 0.00
874 529 0.04
875 439 0.03
876 512 0.04
877 63 0.00
878 161 0.01
879 47 0.00
880 64 0.00
881 194 0.01
882 214 0.02
883 7 0.00
884 12 0.00
885 70 0.01
886 27 0.00
887 512 0.04
888 228 0.02
889 316 0.02
890 169 0.01
891 54 0.00
892 14 0.00
893 13 0.00
894 266 0.02
895 90 0.01
896 582 0.04
897 77 0.01
898 257 0.02
899 470 0.03
900 390 0.03
901 654 0.05
902 593 0.04
903 1413 0.10
904 822 0.06
905 400 0.03
906 234 0.02
907 258 0.02
908 42 0.00
909 18 0.00
910 31 0.00
911 34 0.00
912 13 0.00
913 20 0.00
914 18 0.00
915 14 0.00
916 23 0.00
917 31 0.00
918 42 0.00
919 30 0.00
920 34 0.00
921 47 0.00
922 19 0.00
923 41 0.00
924 28 0.00
925 24 0.00
926 41 0.00
927 32 0.00
928 48 0.00
929 17 0.00
930 8 0.00
931 26 0.00
932 35 0.00
933 9 0.00
934 19 0.00
935 13 0.00
936 4 0.00
937 5 0.00
938 20 0.00
939 14 0.00
940 5 0.00
941 7 0.00
942 8 0.00
943 3 0.00
944 6 0.00
945 7 0.00
946 11 0.00
947 2 0.00
948 9 0.00
949 4 0.00
950 9 0.00
951 8 0.00
952 3 0.00
953 4 0.00
954 2 0.00
955 7 0.00
956 4 0.00
957 5 0.00
958 8 0.00
959 4 0.00
960 2 0.00
962 1 0.00
963 2 0.00
964 6 0.00
965 5 0.00
966 1 0.00
967 4 0.00
968 2 0.00
969 2 0.00
970 5 0.00
971 2 0.00
973 5 0.00
974 1 0.00
976 1 0.00
978 6 0.00
979 7 0.00
980 11 0.00
981 7 0.00
982 6 0.00
983 32 0.00
984 27 0.00
985 30 0.00
986 24 0.00
987 14 0.00
988 8 0.00
989 34 0.00
990 22 0.00
991 31 0.00
992 22 0.00
993 12 0.00
994 26 0.00
995 4 0.00
997 3 0.00
998 1 0.00
1000 1 0.00
1001 1 0.00
1002 2 0.00
1003 10 0.00
1004 12 0.00
1005 4 0.00
1006 2 0.00
1007 1 0.00
1008 2 0.00
1009 7 0.00
1010 1 0.00
1011 3 0.00
1012 9 0.00
1013 4 0.00
1014 3 0.00
1015 1 0.00
1017 1 0.00
1021 3 0.00
1022 3 0.00
1023 1 0.00
1024 283 0.02
1025 278 0.02
1026 233 0.02
1027 232 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATTGACCGGGTCCCCCTCTGCGTGCTACCGATCC
TACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGA
AGGATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
CTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGCTGCAACCCTCGGTCCGGTCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:4794692 original size:26 final size:26
Alignment explanation
Indices: 4794663--4794715 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4794653 CCGGTCCAAT
*
4794663 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4794689 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
4794715 C
1 C
4794716 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4796503 original size:26 final size:26
Alignment explanation
Indices: 4796452--4796504 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4796442 CCGGTTCGAT
* *
4796452 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
4796478 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
4796504 C
1 C
4796505 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4796746 original size:160 final size:159
Alignment explanation
Indices: 4796478--4796846 Score: 479
Period size: 160 Copynumber: 2.3 Consensus size: 159
4796468 ACTTCGTATG
* * * *
4796478 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCATACGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATACAGGCACTCAGC
* *
4796543 CGACAAGAGGGGCAGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
66 CGACAAGAGAGGCAGGATACACAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* *
4796608 TACTGCCACAACCCTCCGTCTGATCTAAT
131 TACTACCACAACCCTCAGTCTGATCTAAT
* * * * *
4796637 CTTAGACTGTGAATGAATTTCCGTATGCCTAAGTCAACCCACGAAATGATCATGCAGGCGCTCAG
1 CTTAGACTGGGAATGAA-CTCCGTATGCCTAAGTCAACCCACGAAATGAGCATACAGGCACTCAG
* * * ** *
4796702 CC-AGCCAGAGAGGCGGGATACGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTTCCGAT
65 CCGA-CAAGAGAGGCAGGATACACAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGAT
* * * * *
4796766 CTTGCTACCGCAACCCTCAGTCTGGTCTGAT
129 CCTACTACCACAACCCTCAGTCTGATCTAAT
* *
4796797 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGC
4796847 GGGCGGGCGG
Statistics
Matches: 179, Mismatches: 29, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
159 46 0.26
160 133 0.74
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATACAGGCACTCAGC
CGACAAGAGAGGCAGGATACACAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
TACTACCACAACCCTCAGTCTGATCTAAT
Found at i:4797542 original size:26 final size:26
Alignment explanation
Indices: 4797506--4797558 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4797496 CTGGTCTGAT
4797506 CTTAGACTGGGAATGAACCCCGTACG
1 CTTAGACTGGGAATGAACCCCGTACG
*
4797532 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACCCCGTACG
4797558 C
1 C
4797559 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.21
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTACG
Found at i:4798894 original size:896 final size:895
Alignment explanation
Indices: 4796637--4808356 Score: 13506
Period size: 896 Copynumber: 13.2 Consensus size: 895
4796627 CTGATCTAAT
* * * * * *
4796637 CTTAGACTGTGAATGAATTTCCGTATGCCTAAGTCAACCCACGAAATGATCATGCAGGCGCTCAG
1 CTTAGACTGGGAATGAA-CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
4796702 CCAGCCAGAGAGGCGGGATACGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTTCCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * *
4796767 TTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
4796832 ACCGACGAAATGAGCGGGCGGGCGGGAACTACGCAGGCCAGAGAGACGGGATGCGCAAGCCGTGG
195 ACCGACGAAACGAGCGAGCGGCCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * **
4796897 ATCGATAGGGTGGTAGGTCGGTTTAGGCACATCTTCATATTTTTGGGTGCCAATGCCATTTTTAT
260 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* *
4796962 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACAACTCGT
325 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* ** *
4797027 TTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCAAGATTTTTTAAAATTTTTTCGGAAGG
390 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
* * *
4797092 AGTTTTGACCCCAAACTTGGTAGACGTGCTCCGTGTATTTTTGTTGGCATGCACAAAAAAATTCA
455 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
4797157 GCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGATACT
520 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
4797222 TTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
585 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
4797287 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAATTACCAGCACCCATCGCACATCATGTGC
650 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * *
4797352 GCACA-CCCCCTGG-CCCCCCGATCGTCGAAACCCCAATACCGTCGGTCAGGTTCTCAGACGATG
715 GCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATG
* * *
4797415 CTCCGACGATGGTGCCCCGGCAAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGC
780 CTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCC-AGCCCAGCATGTGC
* * * *
4797480 TGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACCCCGTACG
844 TGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
4797532 CTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCATGAAACGAACGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
4797597 AGGCCAGAAGGGCAGGATGTGCAAGCTGGGGATC-GACTGGGTCCCCCTCTGCGTGCTGCTGACC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATC
* * ** *
4797661 CTACTGCTGCATA-CCTCGGTCTGGTCCAATCTTAGACT-GGAATGAACTCCATATGCCTAAGCC
130 CTGCTGCCGCA-ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
** *
4797724 AACCGACGAAACGAGCG-GACGGGTGGGCACTACGTCC-GCCAGAGAGACGGGATGCGCAAGCTG
194 AACCGACGAAACGAGCGAG-CGGCCGGGCACTACG-CCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * * *
4797787 TGGATCGATAGGGTGATAGGTCGGTTTAGCCACATCTTTATATTTCTGCATGCCAATTCCATTTT
257 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
4797852 TATGGCTTATAAATTCATACTATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
322 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * *
4797917 CGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGCTCGAGATTTTTTAAAGTTTTTTCGAA
387 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGA
4797982 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
452 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
4798047 TCAGCTAAAAACTCAAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTCTCCCCATTTCAGAC
517 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
4798112 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCT
582 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
4798177 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATAAAG
647 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * *
4798242 TGCGCACACCCACCCCGGCCCCCCCAATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGC
712 TGCGCACACCC-CCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
* * * * *
4798307 GGTGCTTCGGTGATGGTGCCCCGGCAAAGAAAAATGCAGCACCAGCACATGCCCATGCCCAGCAT
776 GATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCA-GCCCAGCAT
* * *
4798372 GTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGCACTCCATATG
840 GTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
4798428 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * ** *
4798493 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGAGTCCCCCTCTATGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * ** * * **
4798558 TGGTGTCGTAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCCATAAACCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
4798623 CCAACGAAACGAGCGAGCGGCCGGGCACTACGCCAGCCAGAGAAACGGGATGCGCAAGCCATGGA
196 CCGACGAAACGAGCGAGCGGCCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
4798688 TCGATAAGGG-GGTAGGTGGGTTTGGGCTCATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
261 TCGAT-AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * * * *
4798752 GCCTTATAAATTCATACAATGGTCCCTTAAGCCTTTAGGTGAAGTTTCATGGCAAGACAACTCGT
325 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* ** * * * *
4798817 TTTCTTTTTTTCACGATTTTCAAAACTTTTTTCGGTTCGGGATTTTTCAAAATTTTTT-TGAAGG
390 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
* *
4798881 AGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
455 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
4798946 GCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTT-TAAAAAGTGTCCCCATTTCAGACACT
520 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * **
4799010 TTAATGGCTATTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT-AGGGGGTGTAAGTTCTTAA
585 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * *
4799074 GGTTTGATGAGGGTTAGGGGGCCAATATAAGCGCCAAGTACCAGCACCCATCGCACATTATGTGC
650 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
** * * **
4799139 GCACACCCCCCCCGGCCCCCCCGATCATCGGAAACCCAATGTCACCGGTCAGG---T-------T
715 GCACA-CCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAT
* * * *
4799194 -CTCCGGCGATGCTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCAAGCATGTG
779 GCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCC-AGCCCAGCATGTG
* * * * * * *
4799258 CTGCCGCAACCTTTGATCCAGTCCGATCTTAGACTGGAAATGAACTCCATATG
843 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * **
4799311 CTTAGACTAGGAATTAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCAAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * *
4799376 CGGCCAGAAGGGTGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTATGTGCTGTCAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
4799441 TGCTGCCGCAACCCTTGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** *
4799506 CCGACGAAACGAGCGGGCAGGCGGGCGGGCACTATGCTAGCCAGAGAGACGGGATGCGCAAGCCA
196 CCGACGAAACGAGC--G-A-GCGGCCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
4799571 TGTATCGATAGGGTGGCAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTT
257 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * * * *
4799636 TATGGCTTGCAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTCCATAGCAAGATGACT
322 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * *
4799701 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACTGTTTGGGATTTTTTAAAATTTTTTCGGA
387 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGA
* * *
4799766 AGGGGTTTTGGCCCCAAACTTGGTAGTCGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAAT
452 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
4799831 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
517 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
4799896 ACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
582 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
4799961 CGA-GTTTGGATGAGGGGTAGGGGGCCAATATAAGGGCCAAGTACCAGGACCCATCGTACATCAT
647 CGAGGTTT-GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * *
4800025 GTGCGCACACCCCCTCCGGCCCCCCCGAACGTCAGAACCCCAATGCCGCCGATCAGGTTCTCCGG
711 GTGCGCACACCCCC-CCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* * * * * * * *
4800090 TGATGCTCTGGTGATGGTGCCCTGACAAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCA
775 CGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGC-CCAGCCCAGCA
** * * *
4800155 TGTGCTGCCTTAACCTTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
839 TGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * ** * *
4800212 CCTGGACTGGGAATGAAGTCTGTATGCCTAAGTCAACTCATAAAATGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
4800277 CGGCCAGAGGGGGGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTACCTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * * *
4800342 TACTACCGTAACCCTTGGTCCGGTCAGATCTTAGACTGGGAATGAACTCCATATCCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
4800407 CCGACGAAACAAGCGGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGTGATGCGCAA
196 CCGACG--A-AA-CGAGC-GA---GCGGCCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
4800472 GCCGTGGATCGATAGGG-GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCA
253 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * * * *
4800536 TTTTTATGCCTTATAAATTCATACAATGGTCCCTTAAGCCTTGAAGTGAAGTTTCATGGCAAGAT
318 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** ** * *
4800601 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTTGTTTC-AGATTTTTTTAAATTTTT
383 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-ACGGTTCGAGATTTTTTAAAATTTTT
* * * * *
4800665 TTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTGGCATGCGCAAA
447 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
4800730 AAATTTCAGCTTAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTGCCCATTT
512 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * ** *
4800795 CGGGCACTTTAATGGCTACTGGCAGCAAAGTTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGA
577 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
4800860 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
642 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
4800925 TCATGGGCGCACA-CCCCCCGG-CCCCCCGATCGTCGGAACCCCAATACCGCCGATCAGGTTCTC
707 TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* *** * ** * *
4800988 TGACGATGCTCCAAAGATGGTGCCCTGATGAAGAAAAATGCAGCACCAGCACATACCCAAGCCCA
772 CGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCC-AGCCCA
*
4801053 GCATGTGCTGCTGCAA-CC-C--T-C-G---G-TC-----C---------A-TCCG-AT-
836 GCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
4801086 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
4801151 CGACCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCTTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** * ** * *
4801216 TGCTGCTGCAACCCTTGGTCCAGTCTAATCTTAGACTGGGAATGAACTCTATATGCCTACGCTAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
4801281 CCGACGAAACGAGC-AGGCGGGCGGACGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGTA
196 CCGACGAAACGAGCGA-GC-GGC---C--G-G-GCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
4801345 AGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATCTCTACATGCCAATGCC
252 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
4801410 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCGTCACGTGAAGTTTCATGGCAAGA
317 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * **
4801475 CGACTCATTTTCTATTTTTCAGGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
382 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * * * *
4801540 TCGGATGGAGTTTTGGCCCCAAACTTGGTAAACGTGATCTTTGTATTTTTGTTGGCGTGTACAAA
447 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
4801605 AAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACGATTTGAAAAAAGTGTCCCTATTT
512 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
4801670 CAGACACTTTAATGGCTACGGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
577 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
4801735 GTTGTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
642 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
4801800 TCATGTGCGCACA-CCCCCTGGCCCCCCCGATCGCCGGAACCACAATGCCGTTGGTCCGGTTCTC
707 TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * * * *
4801864 CAACGATGCTCCAGCGATGGTGCCCTGGCGAAGAAAAATGTGGCACCAGCAGATGCTCGAGCCCA
772 CGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGC-CCAGCCCA
* * * *
4801929 GCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTATAGTGGGAATGAACTCCGTATG
836 GCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
4801989 CTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
4802054 CGGCCA-ATGGGGCGGGATGCAG-AAGTCGACGG-TCGGCCGGTTCCCCCTCTGCGTGCTGCCAA
66 CGGCCAGA-GGGGCGGGATGC-GCAAGCCG-GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGA
* * * * *
4802116 TCCTGCTACTGCAACCCTCAGT-TCGGTTTGATCTAAGACTGGGAATGAACTCCGTATGCCTAAG
128 TCCTGCTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
4802180 CCAACCGACGAAACGAGCGGGCGGGTGGGCGGCTGGGCACGACGTCGGCCAGAGAGACAGGATGC
192 CCAACCGACGAAACGAGCGAGC-----GGC--C-GGGCACTACGCCGGCCAGAGAGACGGGATGC
* * *
4802245 GCAAGCTGTGGATCGATAGGGTGGTAGGTGTGTTTAGCCACATCTTCATATTTCTGCATGCCAAT
249 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* * *
4802310 GCCATTTTTATGGGTTGTAAATTCATACAATGGTCCTTTAATCCTTCAC-----G-----T----
314 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
** *
4802361 -GA-G----G-TTTC-A----T---GATTTTTGAAACTTTTTGTGGTT-TAGGATTTTTTAAAAT
379 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAAT
* * * *
4802410 TTTTTTGGAGGGAGTTTTGTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTA
443 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
4802475 CAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTACCC
508 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
4802540 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-TTTGAAAGGGG
573 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGG
4802604 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
637 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * *
4802669 GCACATCTTGTGCGCACGCCCCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAG
702 GCACATCATGTGCGCAC-ACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAG
* * * * * * * *
4802734 GTTCTCCGATGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGTGACACTAGCATATGCTCG
766 GTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGC-CC
* * * * * * *
4802799 AGCCCAGCATGTGCTGTCGTAACCCTTGATCTGGTCTGATTTTAGACTGGGAATGAACTTCGTAT
830 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
4802864 G
895 G
* * * * *
4802865 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCCCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * ** * *
4802930 CGGCCAGAGGGGCGGGATGTGCAAGCCACGGATCAGTCGGGTCACCCTCTATGTGGTGCCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
4802995 TGCTACCGTAACCTTCAGTCTGGTCTATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
131 TGCTGCCGCAACCCTCGGTCTGG----TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
4803060 CCAACCGATGAAACGAGCGGACGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
192 CCAACCGACGAAACGAGC-GA---GCGGCCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
4803125 GACGTGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTGCATGCCAATGCTA
253 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
4803190 TTTTTATGGCTTGTAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
318 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
4803255 GACTCGTTTTCTATTTTTCACGATTTTTGAAACATTTTGCGGTTCGAGATTTTTTAAAATTTTTT
383 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* ** ** * * *
4803320 C-GAATTGAGTTTTGTACCCAAACTTTTTAGACATGATTCTTGTATTTTTATTGGCATGCACAAA
448 CGGAA-GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
4803384 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
512 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
4803449 TAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
577 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
4803514 TTTCTCAAGGTTTGATGAGGGATAGGGGGTCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
642 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * * *
4803579 TCTTGTGGGCTCAACCCCCCGG-CCCCCCGA-CGTCGAAACCCCAATACCGTCGGTCAGGTTCT-
707 TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* ** * *
4803641 C-ACG-TGCTGCC-GCGATGGTGCCCCCGAAAAGAAAAATGCAGCACCAGCACATGCCCGAGCCA
772 CGACGATGCT-CCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCC-AGCCC
* * *
4803703 AGCATGTGCTG-CG-AA-CCTC-GT-CTG-CT--TC-T-GAGTTGGAAT---CT---TA-G
835 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* *
4803747 CTT-GACTGGGAATGAACTCCG-ATCGCCTAAGTCAACCCACGAAA-TAG-GTGCGGGTGCTCAG
1 CTTAGACTGGGAATGAACTCCGTAT-GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
4803808 TCGGCCAGAGGGGCAGGATGCGCAAGCTGCAGGATC-GTCGGGT-CCCCTCTACATGCTGCTGAT
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCG-GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGAT
* * *
4803871 CCTGCT---GCAACCATC-GTC----CTCATCTTAGACTGGGAATGAACT-CAT-TGCCTAAAGC
129 CCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT-AAGC
* * * *
4803926 CAACCGACGAAACGAGC-AGGCGGGCAGCGGGCGGCACTATGTC-GCCAAAGAGAC-GGTTGCGC
193 CAACCGACGAAACGAGCGA-GC-GGC--C--G-GGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * *
4803988 AAGCCGTGGATCGATAGGGTGGTAGGT-TGTTTAGGCACAT-TTCACATTTCTGAATACCAATGC
251 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
4804051 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
316 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
4804116 ACGAATCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
381 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * * *
4804181 TTCGGAAGGGGTTTTGGCCCCAAACCTGGTAGACGCGATCCTTCTATCTTTT-TTGGCATGCACA
446 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACA
*
4804245 AAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
510 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
4804310 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
575 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
4804375 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
640 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
4804440 CACCATGTGCGCACACTCCCCCC--CCGCCCCCTGATCGACGGAACCCCAATGCCGTCGGTCAGG
705 CATCATGTGCGCACAC-CCCCCCGGCC-CCCCC-GATCGCCGGAACCCCAATGCCGTCGGTCAGG
* * * * *
4804503 TTCTCCGGCGATGCACCGGTGATGGTG-CCCGGTGAAGAAAAATGCGGCACCAGCACATGCTCGA
767 TTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGC-CCA
* * * * * *
4804567 GCCCAGCATGTGCTG-TGTAACCCTCAGTACGGTCCGATCTTAGACTAGGAATGAACTCCGTATG
831 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * ** *
4804631 CTTAGACTGCGAATGAACTCCGTATGCCTAACTCAACCCACAAAACGAGCGTATGGGAGCTTC-G
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC-TCAG
** * * * * * * *
4804695 CCGGCCAGAGGGGTAGGATGTGCAAGTCTGGGATCGGCCGGGTCCCCCTTTACGTGTTGCCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * *
4804760 CTGCTGCCACAACTCTCGATCTGGT-TCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCC
130 CTGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
4804824 AACAGACGAAATGAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGT
194 AACCGACGAAACGAGC-GA---GCGGCCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
**
4804889 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATT
255 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * * *
4804954 TTTATGGTTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGATGA
320 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
4805019 CTCGTTTTCTATTTTTCACAAATTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
385 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG
* * *
4805084 GAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTATAGGCATGCAGAAAA
450 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT-T-GGCATGCACAAAA
* * * *
4805149 AAAGTCAGCTAAAAACTTGAAGTGTAAAAGATTTTGTGACCATATGAAAAAAGTGTCCCCATTTC
513 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
4805214 AGGCACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC-AATGCTCTTTAA-AGGGTGTGAG
578 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
4805277 TTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC-CCC--C-C-CGA
643 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC-A
** *** * * * ** * *
4805337 TC--GCCCG-A-A-CCCCAATG--CCGCCGGT--CAGG---TTC--T--C-T-GGT--GATGCTC
707 TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * ** *** **** * * * *
4805382 CGACGATGGTGCC--C-CT-ATG--AAGAAAAATGTGGCA-CCAGCA-CATGCCCGA-GCCCAAC
772 CGACGATGCT-CCGGCGATGGTGCCCCGGCGAA-GAAAAATGCGGCACCA-GCAC-ATGCCCAGC
*** ** * ** * * ** * * *
4805438 ATGTGC-TGTCGCAACC-C-TCGGTCTGGTCTGATCTTAGA-CTGGGAAT--GAACTCTGTA-TG
833 -CCAGCATGT-GCTGCCGCAACCCTC-GGTCCGGTC-T-GATCTTAGACTGGGAA---TGAACTC
*
4805496 CTTA-G
890 CGTATG
* * * *
4805501 AC-T-GG----GAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * **
4805560 CTGGCCAAAGGGGCTGGATGCGCAAGCCCGGGATCGATTGGGTCCCCCTCTGCGTGCCGCTAATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
** * **
4805625 CTGCTGTTGCAA-CCT-GGTCGGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * ***
4805688 CCCGATGAAACGAGGGGGCGGGCGGGCGGGCAGGCACTACGCCGATGAGAGAGACGGGATGCGCA
195 ACCGACGAAACGA----GCGAGC-GGC---CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
4805753 AGCCATGGATCGATAGGGTGGTTGGTGGGTTTAGGCACA---TC-----T-T-C--G----T---
252 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
4805799 A--TTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGA
317 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
4805862 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGAGATTTTCTAAAATTTTT
382 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* *
4805927 TTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
447 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
4805992 TAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTT
512 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
4806057 AAGACACTTTAATGGCTACTGGCAGCAAACCTGTAATATCTCAAATGCTCTTTAAAGGGGTGTGA
577 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * *
4806122 GTTTTCAAGGTTTGATAAGGGATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCGTACA
642 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
4806187 TCATGTGCG--CA--CCCCCTGCCCCCCCAATCGCCTGAACCCCAATGCCGTCGGTCAAG-T-T-
707 TCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * *
4806245 ---C--T-CT--GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCTGCAAATGCCCGATCCCA
772 CGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCC-AGCCCA
* * * * *
4806302 ACATGAT-CTGTCGCAACCCTCAGTCCGGTCCGATCTTAGAATGGGAATGAACTCCGTATG
836 GCATG-TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
4806362 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCATGAAATGAGCGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * ** *
4806427 CTGCTAGAGGGACAGGATGCACAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
4806492 TGCTACTGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAG
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * *
4806557 TTGACGAAACGAGCGGGCAGG-CGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
196 CCGACGAAACGAGCGAGC-GGCCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
4806621 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
260 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
*
4806686 GGCTTGTAAATTCATACAATTGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
325 GGCTTGTAAATTCATACAA-TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * ** * *
4806751 TTTTCTACTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGGTTTTTTAAAATTTTTTCGGAAG
389 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
* * * * * *
4806816 GAGTTTTGGCCCCAAACATAGTAGACGTGAACCTCGTATTTTTTTTGGCATGCACAAAAAAATTA
454 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * *
4806881 AGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAATGTGT-CCCATTTCAAACAC
519 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
4806945 TTTAATGGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
584 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * *
4807010 AGGTTTGATGAGGCATAGGGGGCCAATGTAAGGGCCAAGTGCCAGCACCCATTGCACATCATGTG
649 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* *
4807075 CACACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
714 CGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAT
* * * * * *
4807140 GCTCCGGTGATAGTGTCCCAGCGAAGAAAAATGCAGCACCAGCACATGCCCAAGCCTAGCATGTG
779 GCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCC-AGCCCAGCATGTG
* * * * **
4807205 CTGCCACAAGCCTCGGTCCGATCCGATCTTAGGTTGGGAATGAACTCCGTATG
843 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
4807258 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * * * * * *
4807323 CAACCAGAGGGGCGGGATGTGCAAGCTGGGGATCGGTTGGGTCACCCTCCGCATGCTACCAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * ** *
4807388 TGCTGTTGCAACCCTCGGTTTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
4807453 CTGACGAAACGAGCGGGCGGGCGAGCGGATGGTCGAGCACTATGCCGACCA-AGAGACGGGATGC
196 CCGACGAAACGAGCGAGC-GGC---C-----G--G-GCACTACGCCGGCCAGAGAGACGGGATGC
* * ***
4807517 GTAAGCCGTGGATCGA-ACGGGTGGTAGGTGGGTTTAGGCTCATCTTCATATTTCTATGTGCCAA
249 GCAAGCCGTGGATCGATA-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* *
4807581 TGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTGATGGC
313 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * *
4807646 AAGACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTGCGGTTCGGGATTTTTTAAAAT
378 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAT
* * *
4807711 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGTATGCA
443 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
*
4807776 CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
508 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * * *
4807841 A-TTCTAAACACTTTATTGGCTAATGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGG
573 ATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
4807905 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAAT
637 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC-AT
* * * *
4807970 -GCACATCATGTACGCA-AACCCCCC-GCCCCCCCGATCGCCGGAACCCCAATACCGCCGGTCAG
701 CGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAG
* * * *
4808032 GTTCT-C--C-A---T----CGATGGTGCCCCAGTGAAGAAAAATACGGCACCAGCGCATGCCCG
766 GTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCC-
* * * *
4808086 AGCCCAGCATGTGCTGTCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTTCGTAT
830 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
4808151 G
895 G
* * * *
4808152 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGGAACGAGCGTGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
4808217 TGGCCAG-GAAGGTGGGATGCGCAAGTCGGGGATCGATTGGGTCCCTCTCTGCATGCAGCCGATC
66 CGGCCAGAG-GGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * ** * * * *
4808281 TTGCTGCCACAACCATCGGT-TCGGTCCAATCTTAGATTAGGAATGAATTCCGCATGCCTAAGCC
130 CTGCTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
*
4808345 AACCGATGAAAC
194 AACCGACGAAAC
4808357 AACCGGGTGT
Statistics
Matches: 9265, Mismatches: 1214, Indels: 693
0.83 0.11 0.06
Matches are distributed among these distances:
844 108 0.01
845 13 0.00
846 221 0.02
847 3 0.00
848 1 0.00
849 1 0.00
850 3 0.00
851 7 0.00
852 4 0.00
853 5 0.00
855 3 0.00
856 1 0.00
857 2 0.00
858 5 0.00
859 9 0.00
860 96 0.01
861 17 0.00
862 11 0.00
863 445 0.05
864 55 0.01
865 158 0.02
866 174 0.02
867 85 0.01
868 104 0.01
869 30 0.00
870 33 0.00
871 19 0.00
872 11 0.00
873 6 0.00
874 524 0.06
875 425 0.05
876 520 0.06
877 17 0.00
878 22 0.00
879 45 0.00
880 66 0.01
881 194 0.02
882 212 0.02
883 282 0.03
884 8 0.00
885 79 0.01
886 21 0.00
887 245 0.03
888 132 0.01
889 88 0.01
890 112 0.01
891 14 0.00
892 6 0.00
893 519 0.06
894 507 0.05
895 110 0.01
896 695 0.08
897 302 0.03
898 36 0.00
899 297 0.03
900 24 0.00
901 496 0.05
902 40 0.00
903 318 0.03
904 416 0.04
905 389 0.04
906 224 0.02
907 236 0.03
908 14 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGAGCGGCCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGC
TCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCAGCCCAGCATGTGCTG
CCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:4799314 original size:26 final size:26
Alignment explanation
Indices: 4799285--4799337 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
4799275 CCAGTCCGAT
4799285 CTTAGACT-GGAAATGAACTCCATATG
1 CTTAGACTAGG-AATGAACTCCATATG
* *
4799311 CTTAGACTAGGAATTAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
4799337 C
1 C
4799338 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:4800219 original size:26 final size:26
Alignment explanation
Indices: 4800190--4800240 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
4800180 TCTGATCTTA
4800190 GACTGGGAATGAACTCTGTATGCCTG
1 GACTGGGAATGAACTCTGTATGCCTG
*
4800216 GACTGGGAATGAAGTCTGTATGCCT
1 GACTGGGAATGAACTCTGTATGCCT
4800241 AAGTCAACTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (26 bp):
GACTGGGAATGAACTCTGTATGCCTG
Found at i:4802890 original size:26 final size:26
Alignment explanation
Indices: 4802840--4802891 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
4802830 TGGTCTGATT
* *
4802840 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
4802866 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
4802892 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:4804634 original size:26 final size:26
Alignment explanation
Indices: 4804605--4804657 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
4804595 ACGGTCCGAT
4804605 CTTAGACTAG-GAATGAACTCCGTATG
1 CTTAGACT-GCGAATGAACTCCGTATG
4804631 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
4804657 C
1 C
4804658 CTAACTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:4805499 original size:26 final size:26
Alignment explanation
Indices: 4805470--4805522 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
4805460 CTGGTCTGAT
4805470 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
4805496 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
4805522 C
1 C
4805523 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:4806365 original size:26 final size:26
Alignment explanation
Indices: 4806336--4806388 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4806326 CCGGTCCGAT
4806336 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
4806362 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
4806388 C
1 C
4806389 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:4808162 original size:26 final size:26
Alignment explanation
Indices: 4808126--4808178 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4808116 CTGGTCTGAT
*
4808126 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4808152 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4808178 C
1 C
4808179 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4808636 original size:26 final size:26
Alignment explanation
Indices: 4808597--4808649 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4808587 CTGATCTGAT
4808597 CTTAGACTGAGAATAAACTCCATATG
1 CTTAGACTGAGAATAAACTCCATATG
* * *
4808623 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATAAACTCCATATG
4808649 C
1 C
4808650 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATAAACTCCATATG
Found at i:4808775 original size:471 final size:459
Alignment explanation
Indices: 4807902--4808818 Score: 1284
Period size: 471 Copynumber: 2.0 Consensus size: 459
4807892 CTTTTTAAGG
*
4807902 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
1 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCC
*
4807967 AATGCACATCATGTACGCAAACCCCCCGCCCCCCCGATCGCCGGAACCCCAATACCGCCGGTCAG
66 AATGCACATCATGTACGCAAACCCCCCACCCCCCCGATCGCCGGAACCCCAATACCGCCGGTCAG
* ** *
4808032 GTTCTCCATCGATGGTGCCCCAGTGAAGAAAAATACGGCACCAGCGCATGCCCGAGCCCAGCATG
131 GTTCTCCATCGATGGTGCCCCAGCGAAGAAAAATACAACACCAGCACATGCCCGAGCCCAGCATG
* * * * * *
4808097 TGCTGTCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGG
196 TGCTGCCGCAACCCTCGATCTGATCTGATCTTAGACTGAGAATAAACTCCATATGCTTAGACTGG
*** *
4808162 GAATGAACTCCGTATGCCTAAGTCAACCCATGGAACGAGCGTGCGGGCACTCAACTGGCCAGGAA
261 GAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCACTCAACTGGCCAGGAA
* * * * * * *
4808227 GGTGGGATGCGCAAGTCGGGGATCGATTGGGTCCCTCTCTGCATGCAGCCGATCTTGCTGCCACA
326 GGCGGGATGCGCAAGTCGAGGATCGACTGGGTCCCCCTCTGCATGCAGCCGATCCTACAGCCACA
4808292 ACCATCGGTTCGGTCCAATCTTAGATTAGGAATGAATTCCGCATGCCTAAGCCAACCGATGAAAC
391 ACCATCGGTTCGGTCCAATCTTAGATTAGGAATGAATTCCGCATGCCTAAGCCAACCGATGAAAC
4808357 AACC
456 AACC
4808361 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCC
1 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCC
* * * **
4808426 -ATCGCACATCATGTGCGCACACCCCCCAACCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTC
66 AAT-GCACATCATGTACGCAAACCCCCC-ACCCCCCCGATCGCCGGAACCCCAATACCGCCGGTC
*
4808490 AGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCC-GACGAAGAAAAATGCAACACCAGCACATGC
129 AGGTTCTCC----A---T-C---GATGGTGCCCCAG-CGAAGAAAAATACAACACCAGCACATGC
*
4808554 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCTGATCTTAGACTGAGAATAAACTCCA
182 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGATCTGATCTTAGACTGAGAATAAACTCCA
* *
4808619 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCGCT
247 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCACT
* * * * *
4808684 CAGCTGGCCA-GAGGGGCGGGATGCGCAAGTCGAGGATCGGCTGGGTCCCCCTCTGCGTGCTA-T
312 CAACTGGCCAGGA-AGGCGGGATGCGCAAGTCGAGGATCGACTGGGTCCCCCTCTGCATGC-AGC
* * * * *
4808747 CGATCCTACAGCCATAACCCTTGGTTCGGTCCAATCTTAGATTGGGAATGAATTCTGCATGCCTA
375 CGATCCTACAGCCACAACCATCGGTTCGGTCCAATCTTAGATTAGGAATGAATTCCGCATGCCTA
4808812 AGCCAAC
440 AGCCAAC
4808819 TAACGAAACA
Statistics
Matches: 400, Mismatches: 42, Indels: 20
0.87 0.09 0.04
Matches are distributed among these distances:
458 2 0.00
459 86 0.22
460 41 0.10
464 1 0.00
467 1 0.00
468 1 0.00
470 3 0.01
471 264 0.66
472 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (459 bp):
GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCC
AATGCACATCATGTACGCAAACCCCCCACCCCCCCGATCGCCGGAACCCCAATACCGCCGGTCAG
GTTCTCCATCGATGGTGCCCCAGCGAAGAAAAATACAACACCAGCACATGCCCGAGCCCAGCATG
TGCTGCCGCAACCCTCGATCTGATCTGATCTTAGACTGAGAATAAACTCCATATGCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCACTCAACTGGCCAGGAA
GGCGGGATGCGCAAGTCGAGGATCGACTGGGTCCCCCTCTGCATGCAGCCGATCCTACAGCCACA
ACCATCGGTTCGGTCCAATCTTAGATTAGGAATGAATTCCGCATGCCTAAGCCAACCGATGAAAC
AACC
Found at i:4810181 original size:897 final size:896
Alignment explanation
Indices: 4808361--4812217 Score: 4513
Period size: 897 Copynumber: 4.4 Consensus size: 896
4808351 TGAAACAACC
4808361 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCC
1 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCC
** *
4808426 ATCGCACATCATGTGCGCACACCCCCCAACCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCA
66 ATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCGATCGTCGGAACCCCAATGTCGTCGGTCA
* * * *
4808491 GGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCAACACCAGCACATGCCC
130 GGTTCTCC-GCGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCC
* * * *
4808556 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCTGATCTTAGACTGAGAATAAACTCCATA
193 GAGCCCAGCATGTGCTACCGCAACCCTCGATCAG-TCTGATCTTAGACTGAGAATGAACTCCATA
* *
4808621 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCGCTCA
257 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCA
* * *
4808686 GCTGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGGCTGGGTCCCCCTCTGCGTGCTATCGAT
322 GCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGTCGAT
* * * * * *
4808751 CCTACAGCCATAACCCTTGGT-TCGGTCCAATCTTAGATTGGGAATGAATTCTGCATGCCTAAGC
387 CCTACTGCCACAACCCTCGGTCT-GGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGC
** * * * * *
4808815 CAACTAACGAAACAAGCGGGCGGGCGAGCGTGCGGGCACTACGCCGGCAAGAGAGACGGGATACG
451 CAACCGACGAAACAAGCGGGTGGG-GGGCG-GCGGGCACTACGCCGGCCAGAGAGACGAGATGCG
* *
4808880 CAAGCCGTGGATTGATA-GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
514 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATG
4808944 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
579 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * * * *
4809009 GACGGCTCGTTTTCTTTTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
644 GACGACTCATTTTCTATTTTTCACAATTTTC-AAACCTTTTGCGGTTCGGGATTTTTTAAAATTT
* * *
4809074 TTTCAGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACA
708 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
4809139 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCAT
773 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * *
4809204 TTTAAACACTTTAATGGCAACTGGCAGCAAACCTGGAAAATCTCAAATGCTCTTTAAGG
838 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
*
4809263 GGGTGTGAGTTCCCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCC
1 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCC
* *
4809328 TTCGCACATCATGTGCGCACACCCCCCGGCCCCCCAATCGTCGGAACCCCAATGTCGTCGGTCAG
66 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGTCGTCGGTCAG
* *
4809393 GTTCTCCAGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCATATGCCCG
131 GTTCTCC-GCGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCG
* *
4809458 AGCCCAGCATGTGCTACCGTAACCCTCGATCAGTCTGATCTTAGACTGGGAATGAACTCCATATG
194 AGCCCAGCATGTGCTACCGCAACCCTCGATCAGTCTGATCTTAGACTGAGAATGAACTCCATATG
* * * * * * *
4809523 CTTAGTCTGGGAATGGACTTCGTATGCCTAAGTCAACCCACGAAAA-AAGCGTGTGAGTGCTCTA
259 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC-AAAACGAGCGTGCGGGCGCTC-A
* * * * * *
4809587 TC-GGCCAGAGGGACAGGATGCGTAAGCCGGGGATC-GATCGGGTCCCCCTCTGGGTGCTGTCGA
322 GCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTGTCGA
** * * * *
4809650 TCCTACTGCTGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGGATGAGCTCT-TATGCCTATGC
386 TCCTACTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGC
* *
4809714 CAACCGACGAAATAAGCGGGTGGGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGACGAGATGCA
451 CAACCGACGAAACAAGCGGGTGGG-GGGCG-GCGGGCACTACGCCGGCCAGAGAGACGAGATGCG
* *
4809779 CAAGCCGTCGATCGATAGGGT-GTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGACAATG
514 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATG
*
4809843 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAA
579 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
4809908 GATGACTCGTTTTCTATTTTTCACGA-TTTCAAACCTTTTGTGGTTCGGGATTTTTTAAAAATTT
644 GACGACTCATTTTCTATTTTTCACAATTTTCAAACCTTTTGCGGTTCGGGATTTTTT-AAAATTT
* * *
4809972 TTT-GGAAGGATTTTTGGCCCCAAACCTAGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
708 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
4810036 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAACAAAGTGTCCCCAT
773 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
4810101 TTCAGACACTTGAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
838 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * * *
4810160 GGGTGTGAGTTCACAAGGTTTGATGAGGGATGGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
1 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCC
* * * * * *
4810225 ATCGCGCATCATGTACGCAAACCCCCCAGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAG
66 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGTCGTCGGTCAG
* * * *
4810290 GTTCT-C-C-A---T---CGATGGTGCCCC-AGTGAAGAAAAATACGACACCAGCGCTTGCCCAA
131 GTTCTCCGCGATGCTCCGCGATGGTGCCCCGA-CGAAGAAAAATACGACACCAGCACATGCCCGA
* *
4810345 GCCCAGCATGTGCTATCGGAA-CC-C--TC-G---G-TC-----C---G---G---TCCA-AT-C
195 GCCCAGCATGTGCTACCGCAACCCTCGATCAGTCTGATCTTAGACTGAGAATGAACTCCATATGC
4810385 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCT
260 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCT
* * * * ** *
4810450 GGCCAGTA-AGGTGGGATGCGCAAGTCGGGGATC-GATCGGGTCCCTTTCTGCGTGCTGCCGATC
325 GGCCAG-AGGGGCGGGATGCGCAAGCCGGGGATCGGCT-GGGTCCCCCTCTGCGTGCTGTCGATC
* * *
4810513 TTGCTGCCACAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
388 CTACTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
* * * * * *
4810578 ACCGACGAAACGAA-CGGGT------AGGCGGGCACTAAGTCGGCCAGAGAGACGGGATCCGTAA
453 ACCGACGAAAC-AAGCGGGTGGGGGGCGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAA
* * *
4810636 GCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTTTACGTGCCAATGCCA
517 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCA
4810701 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
582 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
4810766 GACTCATTTTCTATTTTTCATAATTTTCATAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
647 GACTCATTTTCTATTTTTCACAATTTTCA-AACCTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* *
4810831 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTCGTATTTTT-TATAGGCATGCAAAA
711 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT-T-GGCATGCACAA
* * *
4810895 AAAAATTCAGCAAAAAACTTGAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATT
774 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
4810960 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
839 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
*
4811018 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
1 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCC
* ** *
4811083 ATCGCACATCATGTGCGCACACCCCCTGGCCCCCTCGATCACCGGAACCCCAATGCCGTCGATTA
66 ATCGCACATCATGTGCGCACACCCCCCGGCCCCC-CGATCGTCGGAACCCCAAT---GTCG--TC
* *
4811148 GGTTCTCCGGTGATGCTCCAGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACC
125 GG---TCAGGT--T-CTCC-GCGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATACGACACC
* * * *
4811213 AGCACATGCCCGTAACCC--TA-G-G-T---------C-CG----GTCTGATCTTAGACTGGGAG
182 AGCACATGCCCG-AGCCCAGCATGTGCTACCGCAACCCTCGATCAGTCTGATCTTAGACTGAGAA
* * * * *
4811259 TGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATTCCTCAGTCAACCCACGAAACGAGCGT
246 TGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGT
* * * *
4811324 GCGGGCGCTCAG-TCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATTGGCTGGGTCCCCCTTTA
311 GCGGGCGCTCAGCT-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTG
* * * * * ** *
4811388 CGTGTTGTCGATCCTGCTACCACAACCCTCGATCCGGTCGGATCTTAGACTGGCAATGAACT-TC
375 CGTGCTGTCGATCCTACTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCT-
* * * * * * *
4811452 GTATGCCTAAGCCAACGGACGAAACGAGCAGATAGGGGGGCGGGCAGGCACTATGCCAGCCAGAG
439 GTATGCCTAAGCCAACCGACGAAACAAGCGGGT-GGGGGGC-GGCGGGCACTACGCCGGCCAGAG
* * *
4811517 AGACCAAATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGG--T-GG-----C-TC-------
502 AGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTT
4811566 -G--T---AA----A----T-T--C------A-T-A--CAATGGTCCCTTAAGCCTTCACGTGAA
567 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * * * *
4811604 GTTTCATGGCAAGACAACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTGCAGTTCAGGAT
632 GTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAA-TTTTCAAACCTTTTGCGGTTCGGGAT
* *
4811669 TTTTTCAAATCTTTTT-GGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTAATCCTTGTATTTTT
696 TTTTTAAAAT-TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
*
4811732 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAA
760 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* * *
4811797 AAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATACTC
825 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
4811862 TTTAAGG
890 TTTAAGG
* * * *
4811869 GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT-AAGGGCAACTACTAGCACCC
1 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCC
* * * * * *
4811933 ATCGCACATCATGTGCGCAC-CCCCCCGGCCCCCTTGGATCGTCAGAACCCCAATGCCATCGATT
66 ATCGCACATCATGTGCGCACACCCCCCGGCCCCC--CGATCGTCGGAACCCCAATGTCGTCGGTC
* *
4811997 AGGTTCT--GC---G----GCGATGGTGCCCCGACAAAGAAAAATACGACACCAGCACATACCCG
129 AGGTTCTCCGCGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCG
* * * *
4812053 AGCCCAGCATGTGCTGCCGCAACCCTCTATCCAGTCTGATCTTAGACTGAGAATGAACTTCGTAT
194 AGCCCAGCATGTGCTACCGCAACCCTCGAT-CAGTCTGATCTTAGACTGAGAATGAACTCCATAT
* * * * ** * *
4812118 GCTTAGACTGAGAATGAACTCTGTATGCCTAAGT-AAGCAATGAAATGAGTGTGCGGGCGCTCAG
258 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * * *
4812182 CCGACCAGAGGGGAGGGATGCGCAAGTCAGGGATCG
323 CTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
4812218 ATCGGGTAGG
Statistics
Matches: 2580, Mismatches: 272, Indels: 262
0.83 0.09 0.08
Matches are distributed among these distances:
827 4 0.00
828 43 0.02
829 1 0.00
830 1 0.00
831 1 0.00
832 1 0.00
833 1 0.00
836 2 0.00
839 2 0.00
840 1 0.00
841 1 0.00
842 5 0.00
845 2 0.00
846 54 0.02
847 60 0.02
849 12 0.00
850 52 0.02
851 169 0.07
852 32 0.01
853 105 0.04
854 58 0.02
855 127 0.05
856 17 0.01
857 69 0.03
858 219 0.08
859 18 0.01
860 6 0.00
861 144 0.06
862 33 0.01
863 7 0.00
864 3 0.00
865 1 0.00
866 2 0.00
867 5 0.00
868 1 0.00
869 4 0.00
870 3 0.00
871 2 0.00
872 3 0.00
873 1 0.00
874 3 0.00
877 6 0.00
878 2 0.00
879 1 0.00
880 2 0.00
881 39 0.02
882 7 0.00
883 1 0.00
884 1 0.00
885 3 0.00
886 60 0.02
887 8 0.00
888 177 0.07
889 2 0.00
890 1 0.00
893 3 0.00
894 2 0.00
896 58 0.02
897 317 0.12
898 14 0.01
899 209 0.08
900 174 0.07
901 128 0.05
902 90 0.03
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (896 bp):
GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCC
ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGTCGTCGGTCAG
GTTCTCCGCGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAG
CCCAGCATGTGCTACCGCAACCCTCGATCAGTCTGATCTTAGACTGAGAATGAACTCCATATGCT
TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCTG
GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGTCGATCCTA
CTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACC
GACGAAACAAGCGGGTGGGGGGCGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CATTTTCTATTTTTCACAATTTTCAAACCTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
Found at i:4811275 original size:26 final size:26
Alignment explanation
Indices: 4811246--4811296 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4811236 CCGGTCTGAT
* *
4811246 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4811272 CTTAGACTAGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
4811297 TCCTCAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4812129 original size:26 final size:26
Alignment explanation
Indices: 4812093--4812145 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
4812083 CCAGTCTGAT
4812093 CTTAGACTGAGAATGAACT-TCGTATG
1 CTTAGACTGAGAATGAACTCT-GTATG
4812119 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
4812145 C
1 C
4812146 CTAAGTAAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCTGTATG
Found at i:4816326 original size:26 final size:26
Alignment explanation
Indices: 4816290--4816340 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
4816280 GGTCTGATCA
* **
4816290 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTAGGAATGAACACCGTATGCT
4816316 TAGACTAGGAATGAACACCGTATGC
1 TAGACTAGGAATGAACACCGTATGC
4816341 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACACCGTATGCT
Found at i:4817223 original size:26 final size:26
Alignment explanation
Indices: 4817194--4817243 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
4817184 GATCCGATTG
4817194 TAGACTGGGAATAAACTCCGTATGTT
1 TAGACTGGGAATAAACTCCGTATGTT
*
4817220 TAGACTGGGAATGAACTCCGTATG
1 TAGACTGGGAATAAACTCCGTATG
4817244 ACTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATAAACTCCGTATGTT
Found at i:4818068 original size:26 final size:26
Alignment explanation
Indices: 4818039--4818091 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4818029 CTGGTCCAAT
*
4818039 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
4818065 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
4818091 C
1 C
4818092 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:4818284 original size:873 final size:873
Alignment explanation
Indices: 4813799--4819427 Score: 5605
Period size: 873 Copynumber: 6.3 Consensus size: 873
4813789 CCACAGTCCG
* * * * * *
4813799 GTCCAATCTTAAACTGGGAATGAACTCCGTCTGCCTAAG-TCAACCCACGAAATGAGCGTACGTG
1 GTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCT-AACCGACGAAACGAGCG--C--G
* * * *
4813863 CGGGCGGGCGGGCACTACGTCGGCCAGAGAAACGGGATGCGCAGGCCGTGGATTGATAGGGTGGT
61 CGGGCGGGCGGGCACTACGTCGGCTAGAGAGAC-GGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
4813928 AGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
125 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCAATTTTTATGGCTTGTAAATTCA
* *
4813993 TACAATGGTCCCTAAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
190 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * **
4814058 GATTTTTGAAACTTTTT-ACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
255 GATTTTTAAAACTTTTTGA-GGTTCGAGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCATCA
* * *
4814122 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTTGA
318 AACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
*
4814187 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
383 ACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT-AGACACTTTAATGGCTACTG
* *
4814252 GCAGCAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTATGATGAGGG
447 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
4814316 ATAGGGGGCCAATTTAA-GCACCAAGTACCAACACCCATCGCACATCATGTGCGCACAACCCCCC
512 ATAGGGGGCCAATATAATG-GCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-A-CCCCC
* * * *
4814380 GCTGGCCCCCCTGATCGCCGGAAGCCCAATGCCGCGATCAGGTTCTCCGGCGATGCTCCGGCAAT
574 -C-GGCCCCCCCGATCGTCGGAACCCCAAT---G-G-TC-GG---T-CGG-G-T--TCC-G--AC
* * * * **
4814445 GGTGC-CCTGGCAAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCTCCATGTGCTGCCGCAAC
620 GGTTCTCC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-
* * * * ** *
4814509 CCTCAGTCTAGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTG
683 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCG
* * * * * *
4814574 AATGCCTAAGTTAACCCACGAAACAAGCATGCGGGCGCTCAGTCTGCCAGAGGGGTGGGATGCGC
748 TATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGC
* * * * * * * ** *
4814639 AAGCCGGGGATAG-GTCGGGTCCCCCTTTTTCGTGCGGCTGATCCTGCTACTGCAATGCTCGGTC
813 AAGCCGGGGATCGAATCGGGTCCCCC-TTTGC-T-C-TCAGATCCTACT-CCGCAACCCTCTGTC
*
4814703 GA
873 -T
* * * * * * * *
4814705 GTCTGATCTTAGACTGGGAATGAACCCCGTATGCCAAAGCCAACCGACGAACCGAAGGGGTGAGC
1 GTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCTAACCGACGAAACG-A---GCGCGC
** * * * *
4814770 GGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAACCGTGGATCGAGAGTGTGGTA
62 GGGCGGGCGGGCACTACGTCGGCTAGAGAGAC-GGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
4814835 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
126 GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCAATTTTTATGGCTTGTAAATTCAT
* *
4814900 ACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCACG
191 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* *** * * * **
4814965 ATTTTTGAAACTTTTTGCTATTCTAGATTTTTGAAAATTTTTTCGGAAGGGGTTTTGGCCCCAAA
256 ATTTTTAAAACTTTTTGAGGTTCGAGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCATCAAA
* *
4815030 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAACAATTCAGCTAAAAACTCAAA
320 CTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAA
* *
4815094 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGG
384 CTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT-AGACACTTTAATGGCTACTGG
*
4815159 CAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
448 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
4815224 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACCCCCCGGC
513 TAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * *
4815287 CCCCCCGATCGCCTGAACCCCAATGCCGTCGGTCAGTTTCTCCGGCGATGCTCCGGCAATGGTGC
578 CCCCCCGATCGTCGGAACCCCAATG--GTC-G---G----T-CGG-G-T--TCC-G--ACGGTTC
* *
4815352 -CTCGACGAA-AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTTG
625 TC-CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CCTCG
* * * * * * * *
4815415 GTCCGGTACGATCTTATACTGGGAATGATCTCCGTAAGTTTAGACTGGGAATGAACTCTGTATGC
688 GTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGC
** * * * * * * *
4815480 CTAAGTCAACCCATGAAACGAGCGTGTGGGCACTCAGCCGGCTAGAGGGGTGGGATGCGTAAGCC
753 CTAAGTCAACCCACAAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCC
* *
4815545 GGGGATC-AATCGGGTCCCCCTCAACGTGCTGC-CA-ATCCTACTGCCGCAACCCT-TGGTCCA
818 GGGGATCGAATCGGGTCCCCCT----TTGCT-CTCAGATCCTACT-CCGCAACCCTCT-GT-CT
* * * *
4815605 GTCCAACCTTAGACTAGGAATGAACTCCGTATGCCTACGCCAACCGACGAAACGAGCAGACGGAC
1 GTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCTAACCGACGAAACGAGC-G-C-G-C
* * * *
4815670 AGGCGGGCGGGCACTATG-CTGGCT-GAGAGACGGGATG-GCAAGCTGTGGATTGATAGGGTGGT
62 GGGCGGGCGGGCACTACGTC-GGCTAGAGAGAC-GGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * * *
4815732 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCATTGCGATTTTTATGGCTTGTAAATTCA
125 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCAATTTTTATGGCTTGTAAATTCA
*
4815797 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
190 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* *
4815862 GATTTTTTAAACTTTTT---G--C-------------------T-------G-TTCGG------A
255 GATTTTTAAAACTTTTTGAGGTTCGAGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCATCAAA
* * * *
4815889 CTTGGTGGACATAATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAG
320 CTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAC
*
4815954 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATTGCTACTGGC
385 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT-AGACACTTTAATGGCTACTGGC
* * *
4816019 CGCAAACCTGTAAAATCTCCAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGACGAGGGAT
449 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
4816084 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCGG-C
514 AGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* * * *
4816148 CCCCCGATCGCCAGAACCCCAATACCGCCGGTCAGGTTCTCCGGTGATGATCCGACGATGGTGCC
579 CCCCCGATCGTCGGAACCCCAAT------GGTC-GG---T-CGG-G-T--TCCGAC---GGTTCT
* * *
4816213 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGTGCCCAGCATGTGCTGCTGCAACCCTCAGT
626 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CCTCGGT
* * * * *
4816278 CCGGTCTGATCATAGACTGGGAATGAACT-TCGTATGCTTAGACTAGGAATGAACACCGTATGCC
690 CTGGTCCGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * *
4816342 TAAGTCAACCGACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCG
754 TAAGTCAACCCACAAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCG
* *
4816407 GGGATCG-GTCGGGTCCCCCTTTGCATTCTGCCA-ATCCTACTGCCGCAACCCTC-GATCCG
819 GGGATCGAATCGGGTCCCCCTTTGC--TCT--CAGATCCTACT-CCGCAACCCTCTG-T-CT
* * *
4816466 GTCCAATCTTAGACTAGGAATGAACTCCATATGCCTAAG-TCAACCGACGAAACGAGTGGACGGG
1 GTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCT-AACCGACGAAACGA---G-CGCG
* * ** * * * * * *
4816530 CGGGCAGGCGGGAACTACCCCGACTGGAGAGGCGAGATGCGTAAGCCGTGGATCAATATGGTGGT
61 CGGGCGGGCGGGCACTACGTCGGCTAGAGAGACG-GATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
4816595 AGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
125 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCAATTTTTATGGCTTGTAAATTCA
* * * * *
4816660 TACAATGGTCCCTTAAGCCTGCACGTGAAGTTTCATGGCAAGACGACTCCTTTTCTTTTTTTAAT
190 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * * **
4816725 GATTTTCAAAACTTTTCGCGGTTCGAGATTTTTTAAAAATTTTTTCGAAGGAGTTTTGGCCCCAA
255 GATTTTTAAAACTTTTTGAGGTTCGAGATTTTTT-AAAATTTTTTGGAAGGAGTTTTGGCATCAA
* * *
4816790 ACTTGGTCGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAA
319 ACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
4816855 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAGTTTAGACACTTTAATGGCTACTGG
384 CTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTAGACACTTTAATGGCTACTGG
* * * * *
4816920 CAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAAGTTTCATGAAGGA
448 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * * *
4816985 TAAGGGGCCAATATAA-GGACCAAGGACCTGCACCCATCGCACATCATGTGTGCACAACCCCCTG
513 TAGGGGGCCAATATAATGG-CCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCG
* * *
4817049 ACCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAAGTTCCAGCGATGGT
576 GCCCCCCCGATCGTCGGAACCCCAATG--GTCGGTC-GGGT-TCCGACG--GTT----C-----T
* *
4817114 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCATCCCTC
626 ---CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA-ACCTC
* * * *
4817179 GGTCTGATCCGAT-TGTAGACTGGGAATAAACTCCGTATGTTTAGACTGGGAATGAACTCCGTAT
687 GGTCTGGTCCGATCT-TAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTAT
* * *
4817243 GACTAAGTCAACCCACAAAACAGGCGTACGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAG
751 GCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAG
4817308 CCGGGGATC-AATCGGGT-CCCC----CTCT--G-------T--G--------TG-CT
816 CCGGGGATCGAATCGGGTCCCCCTTTGCTCTCAGATCCTACTCCGCAACCCTCTGTCT
* * * * *
4817340 G-CCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACTGGCGAAACGAGCGGACGGGC
1 GTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCTAACCGACGAAACGAGC-G-C--GC
* * *
4817404 TGGCGGGCGGGCACTACGTCGGCTAGAGAGACAGGATGCGCAAGTCGTGGATCGATAGGGTGGTT
62 GGGCGGGCGGGCACTACGTCGGCTAGAGAGAC-GGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
4817469 GGTGGGTTTCA-GCACATCTTCATATTTCTACATGCCAATGCAATTTTTATGCCTTGTAAATTCA
126 GGTGGGTTT-AGGCACATCTTCATATTTCTACATGCCAATGCAATTTTTATGGCTTGTAAATTCA
* *
4817533 TACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGAGTCGTTTTCTATTTTTCAC
190 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* *
4817598 GATTTTTAAAACTTTTTGAAGTTCGAGATTTTTTAACATTTTTTTGGAAGGAGTTTTGGCATCAA
255 GATTTTTAAAACTTTTTGAGGTTCGAGATTTTTTAA-AATTTTTTGGAAGGAGTTTTGGCATCAA
* * *
4817663 ACTTGGTAGACATGATCCTTGCATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAACCTCAAA
319 ACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * * * *
4817728 CTGTACATGATTTAGTGACCATTTGAAAAAGGTGTCCCCATTTCAAACACTTTAATGGCTATTGG
384 CTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT-AGACACTTTAATGGCTACTGG
* *
4817793 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCCAGGTTTGATGAGGGA
448 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
4817858 TAGTGGGCCAGTATAATGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACACCCCCGG
513 TAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGG
*
4817923 CCCCCCCGATTGTCGGAACCCCAATGG-C-GTC-GG-T-C-A-GGTTCTCCGACGAAGAAAAATG
577 CCCCCCCGATCGTCGGAACCCCAATGGTCGGTCGGGTTCCGACGGTTCTCCGACGAAGAAAAATG
* *
4817981 CGGCACCAGCACCA-GCTCGAGCCCAGCATGTGCTGCCGCAACCTCGGTCTGGTCCAATCTTAGA
642 CGGCACCAGCA-CATGCCCGAGCCCAGCATGTGCTGCCGCAACCTCGGTCTGGTCCGATCTTAGA
* * *
4818045 TTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATAAAA
706 CTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAA
* * *
4818110 CAAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCACAAGCCAGGGATCGACT-GGGTCC
771 CAAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAATCGGGTCC
4818174 CCCTTTGCGTGCTACAGATCCTACTACCGCAACCCTCTGTCT
836 CCCTTTGC-T-CT-CAGATCCTACT-CCGCAACCCTCTGTCT
* *
4818216 GATCCGATCTTAGACTAGGAAT-AACTCCGTATGCCTGAGCTAACCGATGAAACGAGCGCGCGGG
1 G-TCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCTAACCGACGAAACGAGCGCGCGGG
* * * *
4818280 CGGGCGGGCACTACGTCGGCCAAAGAGATGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGT
65 CGGGCGGGCACTACGTCGGCTAGAGAGA-CGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
4818345 GGGTTTAGGCACATCTTCTTATTTTTGCATGGCCAATGCAATTTTTATGGCTTGTAAATTCATAC
129 GGGTTTAGGCACATCTTCATATTTCTACAT-GCCAATGCAATTTTTATGGCTTGTAAATTCATAC
*
4818410 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAGGAT
193 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * *
4818475 TTTTGAAACTTTTT-ACGGTTCGAGATTTTTTAAAATTTTTCGGAAGGAGTTTTGGTATCAAACT
258 TTTTAAAACTTTTTGA-GGTTCGAGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCATCAAACT
* * *
4818539 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTTAGCTAAAAACTCGAACTG
322 TGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAACTG
* *
4818604 TACAACATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTTAGACACTTTAATGGCTACTGGCAG
387 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTAGACACTTTAATGGCTACTGGCAG
4818669 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
451 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
4818734 GGGGCCAATAT-ATGGGCCAAGTACCAGCACCCATCGCACAACATGTGCGCACACCCCCTGGCTC
516 GGGGCCAATATAAT-GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
* * *
4818798 CCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCC
580 CCCCGATCGTCGGAACCCCAATG--GTCGGTC-GGGT-TCC---GA-----C-G-G-T--T-CTC
** * * * *
4818863 CGGGGAAGAAAAATGCGGCACCAGCATATGCCCGAGCCCAGCATGTGCTGTCGCGACCCTCGATC
627 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC-AACCTCGGTC
** * * ** * *
4818928 CAGTCCCATCTTACACTGGGAATGAACTCCATATGCTTACACTGGGAATGAACCCCGTATGCCTA
691 TGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* ** * *
4818993 CA-TCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGG
756 -AGTCAACCCACAAAACAAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * * * *
4819057 GGATCG-GTCGGTTCCCCCTCTGTG-TGCTACCA-ATCTTGCTGCTGCATCCCTCGGTCCA
820 GGATCGAATCGGGTCCCCCT-T-TGCT-CT--CAGATCCTACT-CCGCAACCCTCTGT-CT
* * *
4819115 G-CCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA--------G
1 GTCC-GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCTAACCGACGAAACGAGCGCGCGGG
* * * * *
4819171 CGGGCGGGCACTACGCCGGCCAGAGAGACAGGGATGCACAAGCCGCGAATCGATAGGGTGGTAAA
65 CGGGCGGGCACTACGTCGGCTAGAGAGAC--GGATGCGCAAGCCGTGGATCGATAGGGTGGT--A
* * * **
4819236 GGTGGGGGTTTTAGGCACAATCTTTCATATTTTTTGCTTGCCACATGC-A-TTTTATTTCTTGCT
126 GGT--GGG-TTTAGGCAC-ATC-TTCATA-TTTCTACATGCCA-ATGCAATTTTTATGGCTTG-T
4819299 AAAAAATAATACATACAATGAGT-CCTTAAGCC-TCACGTGAAGTTTCATGTGCAAGTACGACTT
183 ---AAAT--T-CATACAATG-GTCCCTTAAGCCTTCACGTGAAGTTTCATG-GCAAG-ACGAC-T
* **
4819362 CGTTTTCCTATTTTTCATGATTTTTAAATACTCTTTTTGCTGTTCGATGGATTTTTTTAAAATTT
238 CGTTTT-CTATTTTTCACGATTTTTAAA-A--CTTTTTGAGGTTCGA--GA-TTTTTTAAAATTT
4819427 T
296 T
4819428 AACGGAAAGG
Statistics
Matches: 4051, Mismatches: 431, Indels: 474
0.82 0.09 0.10
Matches are distributed among these distances:
847 131 0.03
848 58 0.01
849 2 0.00
851 1 0.00
852 1 0.00
853 1 0.00
854 2 0.00
856 1 0.00
857 5 0.00
858 1 0.00
859 232 0.06
860 58 0.01
861 282 0.07
862 13 0.00
863 158 0.04
864 8 0.00
865 6 0.00
866 3 0.00
867 2 0.00
868 1 0.00
869 4 0.00
870 3 0.00
871 1 0.00
872 39 0.01
873 853 0.21
874 135 0.03
875 4 0.00
876 7 0.00
877 30 0.01
878 19 0.00
880 1 0.00
881 1 0.00
884 1 0.00
885 1 0.00
887 1 0.00
888 1 0.00
890 1 0.00
891 27 0.01
892 30 0.01
893 8 0.00
894 6 0.00
895 2 0.00
896 14 0.00
897 65 0.02
898 347 0.09
899 67 0.02
900 100 0.02
901 203 0.05
902 262 0.06
903 23 0.01
904 223 0.06
905 28 0.01
906 442 0.11
907 85 0.02
908 20 0.00
909 1 0.00
910 2 0.00
911 12 0.00
913 2 0.00
914 14 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (873 bp):
GTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCTAACCGACGAAACGAGCGCGCGGGC
GGGCGGGCACTACGTCGGCTAGAGAGACGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTACATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
TAAAACTTTTTGAGGTTCGAGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCATCAAACTTGGT
AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAACTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAATGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
TCGTCGGAACCCCAATGGTCGGTCGGGTTCCGACGGTTCTCCGACGAAGAAAAATGCGGCACCAG
CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTCGGTCTGGTCCGATCTTAGACTGGGAATGA
ACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCG
GGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAATCGGGTCCCCCTTTGCTC
TCAGATCCTACTCCGCAACCCTCTGTCT
Found at i:4818966 original size:26 final size:26
Alignment explanation
Indices: 4818937--4818994 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
4818927 CCAGTCCCAT
*
4818937 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACCCCATATG
*
4818963 CTTACACTGGGAATGAACCCCGTATG
1 CTTACACTGGGAATGAACCCCATATG
*
4818989 CCTACA
1 CTTACA
4818995 TCAACCCACG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (26 bp):
CTTACACTGGGAATGAACCCCATATG
Found at i:4820152 original size:26 final size:26
Alignment explanation
Indices: 4820123--4820175 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4820113 CTGATCCGAT
*
4820123 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4820149 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4820175 C
1 C
4820176 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4821048 original size:26 final size:26
Alignment explanation
Indices: 4821019--4821069 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
4821009 CGATCCGATC
4821019 TAGACTGGGAATGAACTCCGCATGCT
1 TAGACTGGGAATGAACTCCGCATGCT
*
4821045 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGCATGC
4821070 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGCATGCT
Found at i:4821737 original size:910 final size:889
Alignment explanation
Indices: 4819566--4821990 Score: 3261
Period size: 910 Copynumber: 2.7 Consensus size: 889
4819556 TTCCTACGTG
* * * * * *
4819566 GCCAATGACATTTTAATGACTTGTAAATTCAT-CAATGGCCCTAAACCCTTTACGTGAAGTTGCA
1 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGCCCTAAAGCCTTCACGTGAAGTTTCA
* * ** * *
4819630 TGGTAAGACGACTCGTTCTCTATTTTTCACGATTTTTGAACCTTTTTGCAGTTTGAGATTTTTTA
66 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTGCGGTTTGAGATTTTTTA
* *
4819695 AAATTTTTTCGGAAGGCGTTTTGGCGCCAAACCTGGTAGACATGATCCTTGTATTTTTGTTGGCA
131 AAATTTTTTCGGAAGGAGTTTTGGC-CCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCA
* * * * *
4819760 TGCACAAAAAAATTCAACTAAAAACTTGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGT
195 TGCACAAAAAAATTTAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * *
4819825 CCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACGTCTAAAATCTCAAATGCTCTTTAAGG
260 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGG
*
4819890 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATAGAAGGGCCAAGTACCAGCACCCA
325 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
*
4819955 TCGCACATCATGTGCGCACA--CCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCACCAGTCAG
390 TCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAG
* *
4820018 GTTCTCTGACGATGCTCCGACGATCGTGCCCTGACGAAGAAAAATGCGTCACCAGCACATGCTCG
455 GTTCTCTGACGATGCTCCGACGATGGTGCCCTGACAAAGAAAAATGCGT-ACCAGCACATGCTCG
* *
4820083 ATCCCAGCATGTGCTGCCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAAGTCCGTAT
519 A-ACCAGCATGTGCTGCCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTAT
4820148 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAG
583 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAG
* * * * *
4820213 CCGGCTAGAGGGGCGGGATGCGCAAACCGAGGATCGATCGGGTCCCCCTCTCCGTGTTAATGATC
648 CCGGCCAAAGGGGCGGGAAGCGCAAACCGAGGATCGATCGGGTCCCCCTCTCCATGTTAACGATC
** ** **
4820278 CAACTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
713 CAACTACCGCAACCCTCGATCCAATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
4820343 ACCGATGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGTGGAAGCCGTGG
778 ACCGATGAAACGAGCGGGCGGGCGGGCACTACGCCGACCAAAGAGACGGGATGCGCAAGCCGTGG
* *
4820408 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATTTCATATTTTTGCAC
843 ATCGAAAGGGTGGTAGGTGGGTTTAGGCACATTTCATATTTCTGCAC
* * *
4820455 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGCCCCTTAAGCCTTCACTTGAAGTATT
1 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG-CCCTAAAGCCTTCACGTGAAGT-TT
* * * *
4820520 -ATGGCAAGACGACTCGTTTTCT-TTTTCTTACGACTTTCAAAACTTTTTGCGGTTTGGGATTTT
64 CATGGCAAGACGACTCGTTTTCTATTTT-TCACGATTTTAAAAACTTTTTGCGGTTTGAGATTTT
* * *
4820583 TTATAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGTCATGATCCTTGTATTTTTGTTG
128 TTAAAATTTTTTCGGAAGGAGTTTTGG-CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTG
*
4820648 GCATGCAAAAAAAAATTTAGC-AAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
192 GCATGCACAAAAAAATTTAGCTAAAAAA-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * *
4820712 GTGTCCCCATTTTAGACGCTTTAATGGCTATTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
256 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
* **
4820777 AAGGGGGTGTGAGTTTTCGAGGAATGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
321 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGC
* * *
4820842 ACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATTGTCGGAACCCCAATGTCGCCT
385 ACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCA
* * * *
4820907 GTTAGGTTCTCTGACGATGCTCCGGCGATGGTGCCCTGACAAAGAGAAATGCCGATACTAGCACA
450 GTCAGGTTCTCTGACGATGCTCCGACGATGGTGCCCTGACAAAGAAAAATG-CG-TACCAGCACA
* *
4820972 TGC-CTGAACGCAGCATGTGCTGCCACAACCCTCTGTCCGATCCGATC-TAGACTGGGAATGAAC
513 TGCTC-GAAC-CAGCATGTGCTGCCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAAC
* * * *
4821035 TCCGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAATGGGCGTGTGGG
576 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGG
* * *
4821100 CGCTCAGCCGGCCAAAGGGGCGGGAAGCGCAAGCCG-GTGATC-AGTCGGGTCCCCCTCTGCATG
641 CACTCAGCCGGCCAAAGGGGCGGGAAGCGCAAACCGAG-GATCGA-TCGGGTCCCCCTCTCCATG
** * * *
4821163 TTGCCGATCCTACTACCGTAACCCTCGATCCAATCCAATCTTAGACTGGTAATGAACTCCGTATG
704 TTAACGATCCAACTACCGCAACCCTCGATCCAATCCAATCTTAGACTGGGAATGAACTCCGTATG
*
4821228 CCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGGCGAGCGGGCACTACGCCGACCAGAGA
769 CCTAAGCCAACCGATGAAACGA--------GCGGGC--G-G-GCGGGCACTACGCCGACCAAAGA
* *
4821293 GACGGGATGCGCAAGCCGTTGATCGAGAAGGTGGTGGTGGGTGGGTTTAGGCACATCTTCATATT
822 GACGGGATGCGCAAGCCGTGGATCGA-AA-G-GGTGGTAGGTGGGTTTAGGCACAT-TTCATATT
**
4821358 TCTGCGT
883 TCTGCAC
* * * *
4821365 GCCAATGCCATTTTTATGGCTTGTGAATTCCTACAATGGTCCCTAAAGCCGTCACGTGACGTTTC
1 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG-CCCTAAAGCCTTCACGTGAAGTTTC
* * * * *
4821430 ATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTAAAAAATTTTTACGGTTCGAGATTTTTT
65 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTGCGGTTTGAGATTTTTT
* * *
4821495 AAAATTTTTTCGGAAAGAGTTTTAGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
130 AAAATTTTTTCGGAAGGAGTTTTGGCCC-AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGC
* *
4821560 ATGCACAAAAATATTTAGCTAAAAAATCGACGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
194 ATGCACAAAAAAATTTAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * *
4821625 TCCCTATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
259 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAG
*
4821690 GAGGTGTGAGTTC-CTGAGGTTTGATGAGGGATAGGGGTCCAATATAAGGGCCAAGTACCAGCAC
324 GGGGTGTGAGTTCTC-GAGGTTTGATGAGGGATAGGGG-CCAATATAAGGGCCAAGTACCAGCAC
* * * * ** * * *
4821754 CCATCGTACATCATGTGCGCACACCCCCCCTGACCCCTCTATCACCAGAACCCCAATGCCGTCGG
387 CCATCGCACATCATGTGCGCACACCCCCCC-GGCCCCCCGATCGTCGGAACCCCAATGCCGCCAG
** * * * * *
4821819 TCAGGTTCTCTGGTGATGCTCCGATGATGGTGCCCCGGCAAAGAAAAATACGGCACCAGCACATG
451 TCAGGTTCTCTGACGATGCTCCGACGATGGTGCCCTGACAAAGAAAAATGC-GTACCAGCACATG
* * * * * *
4821884 TTCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTAGGAATGAACTCC
515 CTCGAACC-AGCATGTGCTGCCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCC
* * *
4821949 GTATGCTTAGAATGGGAATGAACTCTGTATGCCTAAGCCAAC
579 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
4821991 AGACGAAACA
Statistics
Matches: 1338, Mismatches: 156, Indels: 62
0.86 0.10 0.04
Matches are distributed among these distances:
889 29 0.02
890 14 0.01
891 269 0.20
892 54 0.04
893 2 0.00
894 285 0.21
895 50 0.04
896 1 0.00
902 6 0.00
904 1 0.00
905 1 0.00
906 44 0.03
907 1 0.00
908 1 0.00
909 34 0.03
910 413 0.31
911 133 0.10
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGCCCTAAAGCCTTCACGTGAAGTTTCA
TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTGCGGTTTGAGATTTTTTA
AAATTTTTTCGGAAGGAGTTTTGGCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCAT
GCACAAAAAAATTTAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGG
GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
CGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGG
TTCTCTGACGATGCTCCGACGATGGTGCCCTGACAAAGAAAAATGCGTACCAGCACATGCTCGAA
CCAGCATGTGCTGCCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCT
TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGCCG
GCCAAAGGGGCGGGAAGCGCAAACCGAGGATCGATCGGGTCCCCCTCTCCATGTTAACGATCCAA
CTACCGCAACCCTCGATCCAATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GATGAAACGAGCGGGCGGGCGGGCACTACGCCGACCAAAGAGACGGGATGCGCAAGCCGTGGATC
GAAAGGGTGGTAGGTGGGTTTAGGCACATTTCATATTTCTGCAC
Found at i:4821966 original size:26 final size:26
Alignment explanation
Indices: 4821928--4821980 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4821918 CTGGTTCGAT
*
4821928 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
* *
4821954 CTTAGAATGGGAATGAACTCTGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
4821980 C
1 C
4821981 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGAATAGGAATGAACTCCGTATG
Found at i:4824108 original size:26 final size:26
Alignment explanation
Indices: 4824072--4824124 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4824062 GTTGACTTAG
* * *
4824072 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4824098 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4824124 G
1 G
4824125 ATTGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4825458 original size:905 final size:897
Alignment explanation
Indices: 4823128--4825963 Score: 3945
Period size: 905 Copynumber: 3.1 Consensus size: 897
4823118 GTATCCCGTT
* * * * *
4823128 CCTCTGGTCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTA
1 CCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * *
4823193 CCAATCTAAGCATACGGAGTTCATTCCTAGTCTAAGATC-GAACCGGACCGAGGGTTGCGGTC-G
66 CCAGTCTAAGCATACGCAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGG-CAG
* * * *
4823256 CACATGTTGGGCTCGGGCATGTGCTTGTGCCGCATTTTT-TCTCGCCAGGGCACCATCGTTGGAG
129 CACATGCTGGGCTCGGGCATGTGCTAGTGCCGCATTTTTCT-TCGCCGGGGCACCATCGTCGGAG
* * * * * *
4823320 CATCGCCGGAGAACCTGATCGACGGCATTGGGGTTTCGGTTATTGGCAGGGCCGGGGGGGTGTGC
193 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGG-GGGGGCGGGGGGGTGTGC
4823385 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
257 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
4823450 TCTAGAACTCACA-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAA
322 TCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAA
* * *
4823514 GTGTCTGAAATGGAGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG-TTTTAACT
387 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACT
* *
4823578 GAATTTTTTTGTGCATGCTAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCC
452 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * *
4823643 CTTCCGAAAAAATTTTAAAAAATTTCGAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAA
517 CTTCCAAAAAAATTTTAAAAAATCTCGAACC-CAAAAAGTTTCGAAAATCATGAAAAATAGAAAA
*
4823708 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCA
581 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * * * *
4823773 TAACAAGGGCATTGGCACGCAGCAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATA
646 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * *
4823838 CACGGCTTGCGTATCCCGCCTCTTTGGCCCGTGTAGTGACCGCCTGCCTGCCCGCT-CT--TTTC
711 CACGGCTTGCGCATCCCGTCTCTCTGG-CCGCGTAGTGCCCGCC-GCCCGCCCGCTGCTCGTTTC
* * * * * *
4823900 GTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGATGGTTGTGG
774 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGAACAGAGGGTTATGG
* * * * *
4823965 CTGCAGGATCGGTAGCACGCAGAGGGGGA-CCTGATCGATCCCCGGCATGCGTATCCCAC
839 CAGCAGGATCGGTAGCACGCAGAGGGGGACCCAG-TCGATCCCCGGCTTGCGCATCCCGC
* * *
4824024 CCTTTGGCCGGCTGAGCGCCCGCACGCTTATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTC
1 CCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* ** ** **
4824089 CTAGTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATTGGATTGGACCGAGGGTTGCGGCAAT
66 CCAGTCTAAGCATAC-GCAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC
* * * *
4824153 ACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCA
130 ACATGCTGGGCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCA
* ** *
4824218 TCGCCGGAGAACCTGTCCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCA
195 TCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGGCGGGGGGGTGTGCGCA
*
4824283 CATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCG
260 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * *
4824348 AGAACTCACACACCCTTGAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
325 AGAACTCACAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGT
* * *
4824413 ATCTGAAATGAGGG-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTG
389 GTCTGAAATG-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTG
*
4824477 AATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
453 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* ** * *
4824542 TTCCAAAAAAATTTTAAAAAATCTCGAACCCTAAAAAGTTTCAAAAATTGTGAAAAATAGAGAAT
518 TTCCAAAAAAATTTTAAAAAATCTCGAACCC-AAAAAGTTTCGAAAATCATGAAAAATAGAAAAC
* *
4824607 GAGTCGTCTTGCCATGAAACTTCACGGGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCAT
582 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* *
4824672 AAAAATGGCATTGGCATGCAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCC
647 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
4824737 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCCCGCTTGCTCGTTTC
712 ACGGCTTGCGCATCCCGTCTCTCTGGCCG-CGTAGTGCCCG-CCGCCCGCCCGC-TGCTCGTTTC
* * *
4824802 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTCAGATTGGACTGAACAGAGGGTTACGA
774 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGAACAGAGGGTTATGG
* * ** * * * *
4824867 CAGCAAGATTGACAGTATGCAGAGGGGAACCCAGCCGATCCCCGGCTTGCGCATCCCGC
839 CAGCAGGATCGGTAGCACGCAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGC
* * * * * *
4824926 CACTCTGGCCGACTGAGTGCTCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACAGAGTTCATT
1 C-CTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * *
4824991 CCCAGTCTAAGCATACGCAGCTCATTCCTAGTCTAAGATCAGGCCAGACCGAGGGTTGCAGCAGC
65 CCCAGTCTAAGCATACGCAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC
* * * *
4825056 ACATGCTCGGCTCGGGCATGTGCTAGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCA
130 ACATGCTGGGCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCA
* * *
4825121 TTGCCGGAGAACCTGACCGGCGGCGTTGGGGTTCCGGTGATCGGGGGGGTCGGAGGGGGTGTGCG
195 TCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGG-CGG-GGGGGTGTGCG
4825186 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
258 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
4825251 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAA
323 CGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAA
* *
4825316 GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCT
387 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACT
* * ***
4825381 GATTTTTTTGTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTTGAAACT
452 GAATTTTTT-TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * *
4825446 ACTTTC-AAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTTGAAAATCATGAAAAATAGAAA
516 CCTTCCAAAAAAATTTTAAAAAATCTCGAAC-CCAAAAAGTTTCGAAAATCATGAAAAATAGAAA
*
4825510 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGA-TTACAACC
580 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA-ATTTACAAGC
* *
4825574 CATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGA
644 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * * * *
4825639 TCCACAGCTTGTGCATCCCGTCTCACTGGCTGGCGTAGTTCTCGCCCGCCCGCTCGCCCGCTCGT
709 TCCACGGCTTGCGCATCCCGTCTCTCTGGC-CGCGTAGTGCCCG-CCGCCCGCCCG-CTGCTCGT
* * **
4825704 TTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA-TCAGATTGAGGGTT
771 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGA-ACAGAGGGTT
* * * * * *
4825768 ATGGTAGTAGGATCGGTAGCACGTAGAGGGGGACCCGGTTGATGCCCGGCTTGCGCATCCCGCC
835 ATGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCG-C
* * * *
4825832 CCTCTGGCCGGCTGAGCACCCGCACGCTCATTCCATGGGTTGACTTAGGCATACGGAGTTAATTC
1 CCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* *
4825897 CCAGTCTAAGCATACGCAGTTCATTCCCAGTCTAAGATCAGACCCGACCGAGGGTTACGGCAGCA
66 CCAGTCTAAGCATACGCAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCA
4825962 CA
131 CA
4825964 GGATCACGTC
Statistics
Matches: 1705, Mismatches: 206, Indels: 49
0.87 0.11 0.03
Matches are distributed among these distances:
895 92 0.05
896 200 0.12
897 103 0.06
898 287 0.17
899 3 0.00
900 2 0.00
902 104 0.06
903 208 0.12
904 7 0.00
905 638 0.37
906 61 0.04
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (897 bp):
CCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
CCAGTCTAAGCATACGCAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCA
CATGCTGGGCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCAT
CGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGGCGGGGGGGTGTGCGCAC
ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
GAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGT
CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAAT
TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
CAAAAAAATTTTAAAAAATCTCGAACCCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTGCGCATCCCGTCTCTCTGGCCGCGTAGTGCCCGCCGCCCGCCCGCTGCTCGTTTCGTCGGTT
GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGAACAGAGGGTTATGGCAGCAGG
ATCGGTAGCACGCAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGC
Found at i:4825917 original size:26 final size:26
Alignment explanation
Indices: 4825880--4825932 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4825870 GTTGACTTAG
*
4825880 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGCAGTTAATTCCCAGTCTAA
*
4825906 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTAATTCCCAGTCTAA
4825932 G
1 G
4825933 ATCAGACCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGCAGTTAATTCCCAGTCTAA
Found at i:4826468 original size:26 final size:26
Alignment explanation
Indices: 4826431--4826483 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4826421 GTTGATTTTG
*
4826431 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
4826457 GCATACGAAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
4826483 G
1 G
4826484 ATTCGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:4826500 original size:551 final size:550
Alignment explanation
Indices: 4825413--4826514 Score: 1557
Period size: 551 Copynumber: 2.0 Consensus size: 550
4825403 CAAAAATACA
*** * * * * *
4825413 AGGATCACGTCTACCAAGTTTGGGGTTGAAACTACTTTCAAAAAATTTTAAAAAATCTCGAACTG
1 AGGATCACGTCTACCAAGTTTGGGGCCAAAACCACTTTAAAAAAAATTTAAAAAATCCCCAACTG
* *
4825478 CAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
66 CAAAAAGTTTCGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAG
4825543 GCTTAAGGGACCATTGTATGAGATTACAACCCATAAAAATGGCATTGGCATGAAGAAATATGAAG
131 GCTTAAGGGACCATTGTATGAGATTACAACCCATAAAAATGGCATTGGCATGAAGAAATATGAAG
* * * * *
4825608 ATGTGCCTAAGCCCACCTACCACCCTATCGATCCACAGCTTGTGCATCCCGTCTCACTGGCTGGC
196 ATGTGCCTAAACCCACCGACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCACTGGCCGAC
** * * *
4825673 GTAGTTCTCGCCCGCCCGCTCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTC
261 GTAGGACTCACCCGCCCGCTCGCCCGCTCGTTTCGTCGGTCGGCTTAGGCATACGGAGTTCATTC
* ** * * * * * * *
4825738 CCAGTCTAAGATTGGATCAGATTGAGGGTTATGGTAGTAGGATCGGTAGCACGTAGAGGGGGACC
326 CCAGTCTAAAATCAGACCAGACTGAGGGTTACGATAGCAGGATCAGCAGCACGTAGAGGGGGACC
* **
4825803 CGGTTGATGCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTCCAT
391 AGGCCGATGCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTCCAT
*
4825868 GGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATACGCAGTTCATTCCCAGTCTAAG
456 GGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
*
4825933 ATCAGACCCGACCGAGGGTTACGGCAGCAC
521 ATCAGACCCGACCGAGGGTTACGACAGCAC
*
4825963 AGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCTAAAAAAAATTTAAAAAATCCCCAACT
1 AGGATCACGTCTACCAAGTTTGGGGCCAAAACCACTT-TAAAAAAAATTTAAAAAATCCCCAACT
* *
4826028 GTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAA
65 GCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAA
** * * *
4826093 GGCTTAAGGGAGTATTGTATGA-ATTTACAAGCCATAAAAATGGCATTGGCATGCAGATATATGA
130 GGCTTAAGGGACCATTGTATGAGA-TTACAACCCATAAAAATGGCATTGGCATGAAGAAATATGA
* * *
4826157 AGATGTGCCTAAACCCACCGACCACCCTATTGATCCATAGCTTGCGCATCCCGTCTCTCTGGCCG
194 AGATGTGCCTAAACCCACCGACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCACTGGCCG
*
4826222 ACGTAGAGAC-CACCCGCCTG-TCCGCCCGCTCGTTTCGTCGGTCGGCTTAGGCATACGGAGTTC
259 ACGTAG-GACTCACCCGCCCGCT-CGCCCGCTCGTTTCGTCGGTCGGCTTAGGCATACGGAGTTC
* *
4826285 ATTCCTAGTCTAAAATCAGACCAGACTGAGGGTTGCGATAGCAGGATCAGCAGCACGTAGAGGGG
322 ATTCCCAGTCTAAAATCAGACCAGACTGAGGGTTACGATAGCAGGATCAGCAGCACGTAGAGGGG
* * *
4826350 GACCAGGCCGAT-CCTCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCCCCCGCTCGCTCAT
387 GACCAGGCCGATGCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCAT
* * * * * * *
4826414 TTCGTTGGTTGATTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCATT
451 TCCATGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGT
** *
4826479 CTAAGATTC-GACTGGACCGAGGGTTGCGACAGCAC
516 CTAAGA-TCAGACCCGACCGAGGGTTACGACAGCAC
4826514 A
1 A
4826515 TGCTGGGCTC
Statistics
Matches: 484, Mismatches: 62, Indels: 11
0.87 0.11 0.02
Matches are distributed among these distances:
550 36 0.07
551 445 0.92
552 3 0.01
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.24
Consensus pattern (550 bp):
AGGATCACGTCTACCAAGTTTGGGGCCAAAACCACTTTAAAAAAAATTTAAAAAATCCCCAACTG
CAAAAAGTTTCGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAGATTACAACCCATAAAAATGGCATTGGCATGAAGAAATATGAAG
ATGTGCCTAAACCCACCGACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCACTGGCCGAC
GTAGGACTCACCCGCCCGCTCGCCCGCTCGTTTCGTCGGTCGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAAATCAGACCAGACTGAGGGTTACGATAGCAGGATCAGCAGCACGTAGAGGGGGACC
AGGCCGATGCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTCCAT
GGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
ATCAGACCCGACCGAGGGTTACGACAGCAC
Found at i:4827366 original size:26 final size:26
Alignment explanation
Indices: 4827330--4827382 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4827320 GTTGACTTAG
*
4827330 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
4827356 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
4827382 G
1 G
4827383 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:4828115 original size:898 final size:898
Alignment explanation
Indices: 4825963--4828124 Score: 3065
Period size: 899 Copynumber: 2.4 Consensus size: 898
4825953 ACGGCAGCAC
* * * * *
4825963 AGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCTAAAAAAAATTTAAAAAATCCCCAACT
1 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCACGAAC-
* * *
4826028 GTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAA
65 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
** *
4826093 GGCTTAAGGGAGTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGATATATGAA
130 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
*
4826158 GATGTGCCTAAACCCACCG-ACCACCCTATTGATCCATAGCTTGCGCATCCCGTCTCTCTGGCCG
195 GATGTGCCTAAACCCA-CGTACCACCCTATCGATCCATAGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * *
4826222 ACGTAGAGACCACCCGCCTGTCCGCCCGCTCGTTTCGTCGGTCGGCTTAGGCATACGGAGTTCAT
259 GCGTAGTGCCCGCCCGCC--T--GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* ** * **
4826287 TCCTAGTCTAAAATCAGACCAGACTGAGGGTTGCGATAGCAGGATCAGCAGCACGTAGAGGGGGA
320 TCCTAGTCTAAAATCAGACCAGACTGAGGGTTGTGGCAGCAAGATCAGCAGCACACAGAGGGGGA
* * * *
4826352 CCAGGCCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCCCCCGCTCGCTCATTTC
385 CCAGGCCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCCCCCGCACGCTCATTTC
* * * *
4826417 GTTGGTTGATTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCATTCTA
450 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTA
* *
4826482 AGATTCGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCACATT
515 AGATTCGACTAGACCGAGGGTTGCGACAGCAAATGCTGGGCTCAGGCATGTGCTGGTGTCACATT
* * * *
4826547 TTTCTTCCCCCGGGCACCATCACCAGAGCATCGCCGGAGAACTTGACCGGTAGCATTAGGGTTAC
580 TTTCTTCACCCGGGCACCATCACCAGAGCATCACCGGAGAACCTGACCGGCAGCATTAGGGTTAC
* *
4826612 GATGATCAGTGGGGCCGGCGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTA
645 GATGATCAGTGGGGCCGGCGGGTGTGCGCACATGATATGCGATGGGTGCTAGTACTTGGCCCTTA
4826677 GATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
710 GATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
4826742 TATAGGTTTGCTGCCAGTAGCCATTAAAGGCTCTAAAATAGGGACACTTTTTTCAAATGGTCACA
775 TACAGGTTTGCTGCCAGTAGCCATTAAAGGCTCTAAAATAGGGACACTTTTTTCAAATGGTCACA
*
4826807 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAAAAATAATACA
840 AAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTACATGCCAAAAATAATACA
*
4826866 AGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCACGAACC
1 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCACGAA-C
*
4826931 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAA
65 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* *
4826996 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGCAATATGAA
130 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
* * * ** * *
4827061 GATGTGCATAAACCCACCTACCACCCTATCCATCCATAATTTACGCATGCCGTCTCTCTGGCCGG
195 GATGTGCCTAAACCCACGTACCACCCTATCGATCCATAGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * *
4827126 AGTAGTGCCCGCCCGCCTGCCCGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCA
260 CGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTA
* * * * * *
4827191 ATCTAAGATCAGACC-GACCCGAGGGTTGTGGCAGCAAGATCGGTAGCACACAGAGGGGGACCCG
325 GTCTAAAATCAGACCAGA-CTGAGGGTTGTGGCAGCAAGATCAGCAGCACACAGAGGGGGACCAG
* * * * * *
4827255 GTCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGTTGAGCGCCCGCACTCTCGTTTCGTGG
389 GCCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCCCCCGCACGCTCATTTCGTGG
* *
4827320 GTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATAC-AGAGTTCATTCCTAGTCTAAGA
454 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGA
* * * *
4827384 -TCGGA-TCAGACCGAGGGTTGCGACAGCAAATGTTGGGCTCGGGCATGTGTTGGTG-CTGCATT
518 TTC-GACT-AGACCGAGGGTTGCGACAGCAAATGCTGGGCTCAGGCATGTGCTGGTGTC-ACATT
* * ** * * * *
4827446 TTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCC
580 TTTCTTCACCCGGGCACCATCACCAGAGCATCACCGGAGAACCTGACCGGCAGCATTAGGGTTAC
* * *
4827511 GGTGATCGAG-GGGGCCGGGGTAGGTGTGCGCACAT-ATATGCGATGGGTGCTGGTACTTGGCCC
645 GATGATC-AGTGGGGCCGGCG--GGTGTGCGCACATGATATGCGATGGGTGCTAGTACTTGGCCC
*
4827574 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
707 TTAGATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
4827639 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-TCTGAAATGGGGACACTTTTTTCAAATGGT
772 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAG-GCTCTAAAATAGGGACACTTTTTTCAAATGGT
* * * *
4827703 CACAAATTCTTGTACACTTCAAGTTTTTAGTTGAA-TTTTTTGTGCATGCCAATAAA-AATAGA
836 CACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTACATGCCAA-AAATAATACA
* * * * *
4827765 AGGATCACATCTACCAAGTTAGGGG-CAAAACTCCTTCTGAAAAATTTTTGAAAAATCTCGAATC
1 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCACGAA-C
** *
4827829 ACAAAAAGATTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
65 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
4827894 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAA
130 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
* ** * * *
4827959 GATGTGCCTAAACCCACGTACCACTCTATCGATCCACGGGTTGCGCATCCCGTCTCTCTAGTCGG
195 GATGTGCCTAAACCCACGTACCACCCTATCGATCCATAGCTTGCGCATCCCGTCTCTCTGGCCGG
*
4828024 CGTAGTGCCCGCCCGCC-GACACC-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCA
260 CGTAGTGCCCGCCCGCCTG-C-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
*
4828087 TAGTCTAAAATCAGACCAGACTGAGGGTTGTAGCAGCA
323 TAGTCTAAAATCAGACCAGACTGAGGGTTGTGGCAGCA
4828125 CATGCTGGGC
Statistics
Matches: 1117, Mismatches: 127, Indels: 35
0.87 0.10 0.03
Matches are distributed among these distances:
897 1 0.00
898 301 0.27
899 368 0.33
900 185 0.17
901 15 0.01
902 1 0.00
903 245 0.22
904 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (898 bp):
AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCACGAACG
TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
ATGTGCCTAAACCCACGTACCACCCTATCGATCCATAGCTTGCGCATCCCGTCTCTCTGGCCGGC
GTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAG
TCTAAAATCAGACCAGACTGAGGGTTGTGGCAGCAAGATCAGCAGCACACAGAGGGGGACCAGGC
CAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCCCCCGCACGCTCATTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTC
GACTAGACCGAGGGTTGCGACAGCAAATGCTGGGCTCAGGCATGTGCTGGTGTCACATTTTTCTT
CACCCGGGCACCATCACCAGAGCATCACCGGAGAACCTGACCGGCAGCATTAGGGTTACGATGAT
CAGTGGGGCCGGCGGGTGTGCGCACATGATATGCGATGGGTGCTAGTACTTGGCCCTTAGATTGG
CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
TTTGCTGCCAGTAGCCATTAAAGGCTCTAAAATAGGGACACTTTTTTCAAATGGTCACAAAATCT
TGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTACATGCCAAAAATAATACA
Found at i:4828984 original size:26 final size:26
Alignment explanation
Indices: 4828947--4828999 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4828937 GTTGACTTAG
*
4828947 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGCAGTTAATTCCCAGTCTAA
*
4828973 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTAATTCCCAGTCTAA
4828999 G
1 G
4829000 ATCAGACCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGCAGTTAATTCCCAGTCTAA
Found at i:4829520 original size:551 final size:551
Alignment explanation
Indices: 4828479--4829581 Score: 1561
Period size: 551 Copynumber: 2.0 Consensus size: 551
4828469 CAAAAATACA
*** * * * *
4828479 AGGATCACGTCTACCAAGTTTGGGGTTGAAACTACTTTCAAAAAAATTTTAAAAAATCTCGAACT
1 AGGATCACGTCTACCAAGTTTGGGGCCAAAACCACTTTCAAAAAAAATTTAAAAAATCCCCAACT
* *
4828544 GCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
66 GCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAA
4828609 GGCTTAAGGGACCATTGTATGAGATTACAACCCATAAAAATGGCATTGGCATGAAGAAATATGAA
131 GGCTTAAGGGACCATTGTATGAGATTACAACCCATAAAAATGGCATTGGCATGAAGAAATATGAA
* * * * *
4828674 GATGTGCCTAAGCCCACCTACCACCCTATCGATCCACAGCTTGTGCATCCCGTCTCACTGGCTGG
196 GATGTGCCTAAACCCACCGACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCACTGGCCGA
** * * *
4828739 CGTAGTTCTCGCCCGCCCGCTCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATT
261 CGTAGGACTCACCCGCCCGCTCGCCCGCTCGTTTCGTCGGTCGGCTTAGGCATACGGAGTTCATT
* ** * * * * * * *
4828804 CCCAGTCTAAGATTGGATCAGATTGAGGGTTATGGTAGTAGGATCGGTAGCACGTAGAGGGGGAC
326 CCCAGTCTAAAATCAGACCAGACTGAGGGTTACGATAGCAGGATCAGCAGCACGTAGAGGGGGAC
* **
4828869 CCGGTTGATGCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTCCA
391 CAGGCCGATGCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTCCA
*
4828934 TGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATACGCAGTTCATTCCCAGTCTAA
456 TGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
*
4828999 GA-TCAGACCCGACCGAGGGTTACGGCAGCAC
521 GATTC-GACCCGACCGAGGGTTACGACAGCAC
*
4829030 AGGATCACGTCTACCAAGTTTGGGGCCAAAACC-CCTTCTAAAAAAAATTTAAAAAATCCCCAAC
1 AGGATCACGTCTACCAAGTTTGGGGCCAAAACCACTTTC-AAAAAAAATTTAAAAAATCCCCAAC
* *
4829094 TGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGA
65 TGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGA
** * * *
4829159 AGGCTTAAGGGAGTATTGTATGA-ATTTACAAGCCATAAAAATGGCATTGGCATGCAGATATATG
130 AGGCTTAAGGGACCATTGTATGAGA-TTACAACCCATAAAAATGGCATTGGCATGAAGAAATATG
* * *
4829223 AAGATGTGCCTAAACCCACCGACCACCCTATTGATCCATAGCTTGCGCATCCCGTCTCTCTGGCC
194 AAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCACTGGCC
*
4829288 GACGTAGAGAC-CACCCGCCTG-TCCGCCCGCTCGTTTCGTCGGTCGGCTTAGGCATACGGAGTT
259 GACGTAG-GACTCACCCGCCCGCT-CGCCCGCTCGTTTCGTCGGTCGGCTTAGGCATACGGAGTT
* *
4829351 CATTCCTAGTCTAAAATCAGACCAGACTGAGGGTTGCGATAGCAGGATCAGCAGCACGTAGAGGG
322 CATTCCCAGTCTAAAATCAGACCAGACTGAGGGTTACGATAGCAGGATCAGCAGCACGTAGAGGG
* * *
4829416 GGACCAGGCCGAT-CCTCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCCCCCGCTCGCTCA
387 GGACCAGGCCGATGCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCA
* * * * * * *
4829480 TTTCGTTGGTTGATTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAT
451 TTCCATGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATACGAAGTTCATTCCCAG
** *
4829545 TCTAAGATTCGACTGGACCGAGGGTTGCGACAGCAC
516 TCTAAGATTCGACCCGACCGAGGGTTACGACAGCAC
4829581 A
1 A
4829582 TGCTGGGCTC
Statistics
Matches: 485, Mismatches: 61, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
550 8 0.02
551 474 0.98
552 3 0.01
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.24
Consensus pattern (551 bp):
AGGATCACGTCTACCAAGTTTGGGGCCAAAACCACTTTCAAAAAAAATTTAAAAAATCCCCAACT
GCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAGATTACAACCCATAAAAATGGCATTGGCATGAAGAAATATGAA
GATGTGCCTAAACCCACCGACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCACTGGCCGA
CGTAGGACTCACCCGCCCGCTCGCCCGCTCGTTTCGTCGGTCGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAAATCAGACCAGACTGAGGGTTACGATAGCAGGATCAGCAGCACGTAGAGGGGGAC
CAGGCCGATGCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTCCA
TGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
GATTCGACCCGACCGAGGGTTACGACAGCAC
Found at i:4829535 original size:26 final size:26
Alignment explanation
Indices: 4829498--4829550 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4829488 GTTGATTTTG
*
4829498 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
4829524 GCATACGAAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
4829550 G
1 G
4829551 ATTCGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:4830433 original size:26 final size:26
Alignment explanation
Indices: 4830397--4830449 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4830387 GTTGACTTAG
*
4830397 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
4830423 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
4830449 G
1 G
4830450 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:4830870 original size:899 final size:898
Alignment explanation
Indices: 4829030--4831192 Score: 3067
Period size: 899 Copynumber: 2.4 Consensus size: 898
4829020 ACGGCAGCAC
* * * * * *
4829030 AGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCTAAAAAAAATTTAAAAAATCCCCAACT
1 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCACGAACC
* * *
4829095 GTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAA
66 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
**
4829160 GGCTTAAGGGAGTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGATATATGAA
131 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA-ATATGAA
* *
4829225 GATGTGCCTAAACCCACCGACCACCCTATTGATCCATAGCTTGCGCATCCCGTCTCTCTGGCC-G
195 GATGTGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * *
4829289 ACGTAGAGACCACCCGCCTGTCCGCCCGCTCGTTTCGTCGGTCGGCTTAGGCATACGGAGTTCAT
260 A-GTAGTGCCCGCCCGCC--T--GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* ** * **
4829354 TCCTAGTCTAAAATCAGACCAGACTGAGGGTTGCGATAGCAGGATCAGCAGCACGTAGAGGGGGA
320 TCCTAGTCTAAAATCAGACCAGACTGAGGGTTGTGGCAGCAAGATCAGCAGCACACAGAGGGGGA
* * * *
4829419 CCAGGCCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCCCCCGCTCGCTCATTTC
385 CCAGGCCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCCCCCGCACGCTCATTTC
* * * *
4829484 GTTGGTTGATTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCATTCTA
450 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTA
* *
4829549 AGATTCGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCACATT
515 AGATTCGACTAGACCGAGGGTTGCGACAGCAAATGCTGGGCTCAGGCATGTGCTGGTGTCACATT
* * * *
4829614 TTTCTTCCCCCGGGCACCATCACCAGAGCATCGCCGGAGAACTTGACCGGTAGCATTAGGGTTAC
580 TTTCTTCACCCGGGCACCATCACCAGAGCATCACCGGAGAACCTGACCGGCAGCATTAGGGTTAC
* *
4829679 GATGATCAGTGGGGCCGGCGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTA
645 GATGATCAGTGGGGCCGGCGGGTGTGCGCACATGATATGCGATGGGTGCTAGTACTTGGCCCTTA
4829744 GATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
710 GATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
4829809 TATAGGTTTGCTGCCAGTAGCCATTAAAGGCTCTAAAATAGGGACACTTTTTTCAAATGGTCACA
775 TACAGGTTTGCTGCCAGTAGCCATTAAAGGCTCTAAAATAGGGACACTTTTTTCAAATGGTCACA
*
4829874 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAAAAATAATACA
840 AAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTACATGCCAAAAATAATACA
*
4829933 AGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCACGAACC
1 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCACGAACC
*
4829998 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAA
66 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
4830063 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGCAATATGAA
131 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG-AATATGAA
* * ** * *
4830128 GATGTGCATAAACCCACCTACCACCCTATCCATCCATAATTTACGCATGCCGTCTCTCTGGCCGG
195 GATGTGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCGCATCCCGTCTCTCTGGCCGG
* * *
4830193 AGTAGTGCCCGCCCGCCTGCCCGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCA
260 AGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTA
* * * * *
4830258 ATCTAAGATCAGACC-GACCCGAGGGTTGTGGCAGCAAGATCGGTAGCACACAGAGGGGGACTC-
325 GTCTAAAATCAGACCAGA-CTGAGGGTTGTGGCAGCAAGATCAGCAGCACACAGAGGGGGAC-CA
* * * * * *
4830321 GGTCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGTTGAGCGCCCGCACTCTCGTTTCGTG
388 GGCCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCCCCCGCACGCTCATTTCGTG
* *
4830386 GGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATAC-AGAGTTCATTCCTAGTCTAAG
453 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAG
* * * *
4830450 A-TCGGA-TCAGACCGAGGGTTGCGACAGCAAATGTTGGGCTCGGGCATGTGTTGGTG-CTGCAT
517 ATTC-GACT-AGACCGAGGGTTGCGACAGCAAATGCTGGGCTCAGGCATGTGCTGGTGTC-ACAT
* * ** * * * *
4830512 TTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTC
579 TTTTCTTCACCCGGGCACCATCACCAGAGCATCACCGGAGAACCTGACCGGCAGCATTAGGGTTA
* * *
4830577 CGGTGATCGAG-GGGGCCGGGGTAGGTGTGCGCACAT-ATATGCGATGGGTGCTGGTACTTGGCC
644 CGATGATC-AGTGGGGCCGGCG--GGTGTGCGCACATGATATGCGATGGGTGCTAGTACTTGGCC
*
4830640 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
706 CTTAGATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
4830705 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-TCTGAAATGGGGACACTTTTTTCAAATGG
771 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG-GCTCTAAAATAGGGACACTTTTTTCAAATGG
* * * *
4830769 TCACAAATTCTTGTACACTTCAAGTTTTTAGTTGAATTTTTTTGTGCATGCCAATAAA-AATAGA
835 TCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTACATGCCAA-AAATAATACA
* * * * * *
4830833 AGGATCACATCTACCAAGTTAGGGG-CAAAACTCCTTCTGAAAAATTTTTGAAAAATCTCGAATC
1 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCACGAACC
** *
4830897 ACAAAAAGATTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
66 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
4830962 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAA
131 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC-AGAATATGAA
* * ** * * *
4831027 GATGTGCCTAAACCCACGTACCACTCTATCGATCCACGGGTTGCGCATCCCGTCTCTCTAGTCGG
195 GATGTGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCGCATCCCGTCTCTCTGGCCGG
* *
4831092 CGTAGTGCCCGCCCGCC-GACACC-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCA
260 AGTAGTGCCCGCCCGCCTG-C-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
*
4831155 TAGTCTAAAATCAGACCAGACTGAGGGTTGTAGCAGCA
323 TAGTCTAAAATCAGACCAGACTGAGGGTTGTGGCAGCA
4831193 CATGCTGGGC
Statistics
Matches: 1121, Mismatches: 122, Indels: 38
0.88 0.10 0.03
Matches are distributed among these distances:
898 8 0.01
899 612 0.55
900 233 0.21
901 18 0.02
903 247 0.22
904 3 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (898 bp):
AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCACGAACC
GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCGCATCCCGTCTCTCTGGCCGGA
GTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAG
TCTAAAATCAGACCAGACTGAGGGTTGTGGCAGCAAGATCAGCAGCACACAGAGGGGGACCAGGC
CAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCCCCCGCACGCTCATTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTC
GACTAGACCGAGGGTTGCGACAGCAAATGCTGGGCTCAGGCATGTGCTGGTGTCACATTTTTCTT
CACCCGGGCACCATCACCAGAGCATCACCGGAGAACCTGACCGGCAGCATTAGGGTTACGATGAT
CAGTGGGGCCGGCGGGTGTGCGCACATGATATGCGATGGGTGCTAGTACTTGGCCCTTAGATTGG
CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
TTTGCTGCCAGTAGCCATTAAAGGCTCTAAAATAGGGACACTTTTTTCAAATGGTCACAAAATCT
TGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTACATGCCAAAAATAATACA
Found at i:4832052 original size:26 final size:26
Alignment explanation
Indices: 4832015--4832067 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4832005 GTTGACTTAG
*
4832015 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGCAGTTAATTCCCAGTCTAA
*
4832041 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTAATTCCCAGTCTAA
4832067 G
1 G
4832068 ATCAGACCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGCAGTTAATTCCCAGTCTAA
Found at i:4832588 original size:550 final size:551
Alignment explanation
Indices: 4831547--4832648 Score: 1536
Period size: 550 Copynumber: 2.0 Consensus size: 551
4831537 CAAAAATACA
*** * * * *
4831547 AGGATCACGTCTACCAAGTTTGGGGTTGAAACTACTTTCAAAAAAATTTTAAAAAATCTCGAACT
1 AGGATCACGTCTACCAAGTTTGGGGCCAAAACCACTTTCAAAAAAAATTTAAAAAATCCCCAACT
* *
4831612 GCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
66 GCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAA
4831677 GGCTTAAGGGACCATTGTATGAGATTACAACCCATAAAAATGGCATTGGCATGAAGAAATATGAA
131 GGCTTAAGGGACCATTGTATGAGATTACAACCCATAAAAATGGCATTGGCATGAAGAAATATGAA
* * * * *
4831742 GATGTGCCTAAGCCCACCTACCACCCTATCGATCCACAGCTTGTGCATCCCGTCTCACTGGCTGG
196 GATGTGCCTAAACCCACCGACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCACTGGCCGA
** * * *
4831807 CGTAGTTCTCGCCCGCCCGCTCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATT
261 CGTAGGACTCACCCGCCCGCTCGCCCGCTCGTTTCGTCGGTCGGCTTAGGCATACGGAGTTCATT
* ** * * * * * * *
4831872 CCCAGTCTAAGATTGGATCAGATTGAGGGTTATGGTAGTAGGATCGGTAGCACGTAGAGGGGGAC
326 CCCAGTCTAAAATCAGACCAGACTGAGGGTTACGATAGCAGGATCAGCAGCACGTAGAGGGGGAC
* **
4831937 CCGGTTGATGCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTCCA
391 CAGGCCGATGCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTCCA
*
4832002 TGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATACGCAGTTCATTCCCAGTCTAA
456 TGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
*
4832067 GA-TCAGACCCGACCGAGGGTTACGGCAGCAC
521 GATTC-GACCCGACCGAGGGTTACGACAGCAC
*
4832098 AGGATCACGTCTACCAAGTTTGGGGCCAAAACC-CCTTCTAAAAAAAATTTAAAAAATCCCCAAC
1 AGGATCACGTCTACCAAGTTTGGGGCCAAAACCACTTTC-AAAAAAAATTTAAAAAATCCCCAAC
* *
4832162 TGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGA
65 TGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGA
** * * *
4832227 AGGCTTAA-GGAGTATTGTATGA-ATTTACAAGCCATAAAAATGGCATTGGCATGCAGATATATG
130 AGGCTTAAGGGACCATTGTATGAGA-TTACAACCCATAAAAATGGCATTGGCATGAAGAAATATG
* * *
4832290 AAGATGTGCCTAAACCCACCGACCACCCTATTGATCCATAGCTTGCGCATCCCGTCTCTCTGGCC
194 AAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCACTGGCC
*
4832355 GACGTAGAGAC-CACCCGCCTG-TC-CGCCGCTCGTTTCGTCGGTCGGCTTAGGCATACGGAGTT
259 GACGTAG-GACTCACCCGCCCGCTCGC-CCGCTCGTTTCGTCGGTCGGCTTAGGCATACGGAGTT
* *
4832417 CATTCCTAGTCTAAAATCAGACCAGACTGAGGGTTGCGATAGCAGGATCAGCAGCAACGTAGAGG
322 CATTCCCAGTCTAAAATCAGACCAGACTGAGGGTTACGATAGCAGGATCAGCAGC-ACGTAGAGG
* * *
4832482 GGGACCAGGCCGAT-CCTCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCCCCCGCTCGCTC
386 GGGACCAGGCCGATGCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTC
* * * * * *
4832546 ATTTCGTTGGTTGATTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCA
450 ATTCCATGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATACGAAGTTCATTCCCA
* ** *
4832611 TTCTAAGATTCGACTGGACCGAGGGTTGCGACAGCAC
515 GTCTAAGATTCGACCCGACCGAGGGTTACGACAGCAC
4832648 A
1 A
4832649 TGCTGGGCTC
Statistics
Matches: 483, Mismatches: 61, Indels: 15
0.86 0.11 0.03
Matches are distributed among these distances:
548 1 0.00
549 83 0.17
550 276 0.57
551 123 0.25
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.24
Consensus pattern (551 bp):
AGGATCACGTCTACCAAGTTTGGGGCCAAAACCACTTTCAAAAAAAATTTAAAAAATCCCCAACT
GCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAGATTACAACCCATAAAAATGGCATTGGCATGAAGAAATATGAA
GATGTGCCTAAACCCACCGACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCACTGGCCGA
CGTAGGACTCACCCGCCCGCTCGCCCGCTCGTTTCGTCGGTCGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAAATCAGACCAGACTGAGGGTTACGATAGCAGGATCAGCAGCACGTAGAGGGGGAC
CAGGCCGATGCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTCCA
TGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
GATTCGACCCGACCGAGGGTTACGACAGCAC
Found at i:4832602 original size:26 final size:26
Alignment explanation
Indices: 4832565--4832617 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4832555 GTTGATTTTG
*
4832565 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
4832591 GCATACGAAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
4832617 G
1 G
4832618 ATTCGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:4833500 original size:26 final size:26
Alignment explanation
Indices: 4833464--4833516 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4833454 GTTGACTTAG
*
4833464 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
4833490 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
4833516 G
1 G
4833517 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:4833837 original size:900 final size:900
Alignment explanation
Indices: 4832098--4834259 Score: 3071
Period size: 899 Copynumber: 2.4 Consensus size: 900
4832088 ACGGCAGCAC
* * * * * *
4832098 AGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCTAAAAAAAATTTAAAAAATCCCCAACT
1 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCACGAACC
* * *
4832163 GTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAA
66 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
**
4832228 GGCTTAA-GGAGTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGATATATGAA
131 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA-ATATGAA
* *
4832292 GATGTGCCTAAACCCACCGACCACCCTATTGATCCATAGCTTGCGCATCCCGTCTCTCTGGCC-G
195 GATGTGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * * * *
4832356 ACGTAGAGACCACCCGCCTGTCCGCCGCTCGTTTCGTCGGTCGGCTTAGGCATACGGAGTTCATT
260 A-GTAGTGCCCGCCCGCCTG-ACACCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* ** *
4832421 CCTAGTCTAAAATCAGACCAGACTGAGGGTTGCGATAGCAGGATCAGCAGCAACGTAGAGGGGGA
323 CCTAGTCTAAAATCAGACCAGACTGAGGGTTGTGGCAGCAAGATCAGCAGCAACG-AGAGGGGGA
* * * *
4832486 CCAGGCCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCCCCCGCTCGCTCATTTC
387 CCAGGCCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCCCCCGCACGCTCATTTC
* * * *
4832551 GTTGGTTGATTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCATTCTA
452 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTA
* *
4832616 AGATTCGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCACATT
517 AGATTCGACTAGACCGAGGGTTGCGACAGCAAATGCTGGGCTCAGGCATGTGCTGGTGTCACATT
* * * *
4832681 TTTCTTCCCCCGGGCACCATCACCAGAGCATCGCCGGAGAACTTGACCGGTAGCATTAGGGTTAC
582 TTTCTTCACCCGGGCACCATCACCAGAGCATCACCGGAGAACCTGACCGGCAGCATTAGGGTTAC
* *
4832746 GATGATCAGTGGGGCCGGCGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTA
647 GATGATCAGTGGGGCCGGCGGGTGTGCGCACATGATATGCGATGGGTGCTAGTACTTGGCCCTTA
4832811 GATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
712 GATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
4832876 TATAGGTTTGCTGCCAGTAGCCATTAAAGGCTCTAAAATAGGGACACTTTTTTCAAATGGTCACA
777 TACAGGTTTGCTGCCAGTAGCCATTAAAGGCTCTAAAATAGGGACACTTTTTTCAAATGGTCACA
*
4832941 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAA-AAATAATACA
842 AAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTACATGCCAATAAA-AATACA
*
4833000 AGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCACGAACC
1 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCACGAACC
*
4833065 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAA
66 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
4833130 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGCAATATGAA
131 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG-AATATGAA
* * ** * *
4833195 GATGTGCATAAACCCACCTACCACCCTATCCATCCATAATTTACGCATGCCGTCTCTCTGGCCGG
195 GATGTGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCGCATCCCGTCTCTCTGGCCGG
* *
4833260 AGTAGTGCCCGCCCGCCTG-C-CCGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCC
260 AGTAGTGCCCGCCCGCCTGACACCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * *
4833323 CAATCTAAGATCAGACC-GACCCGAGGGTTGTGGCAGCAAGATCGGTAGCACAC-AGAGGGGGAC
325 TAGTCTAAAATCAGACCAGA-CTGAGGGTTGTGGCAGCAAGATCAGCAGCA-ACGAGAGGGGGAC
* * * * * * *
4833386 CCGGTCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGTTGAGCGCCCGCACTCTCGTTTCG
388 CAGGCCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCCCCCGCACGCTCATTTCG
* *
4833451 TGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATAC-AGAGTTCATTCCTAGTCTA
453 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTA
* * * *
4833515 AGA-TCGGA-TCAGACCGAGGGTTGCGACAGCAAATGTTGGGCTCGGGCATGTGTTGGTG-CTGC
517 AGATTC-GACT-AGACCGAGGGTTGCGACAGCAAATGCTGGGCTCAGGCATGTGCTGGTGTC-AC
* * ** * * *
4833577 ATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGT
579 ATTTTTCTTCACCCGGGCACCATCACCAGAGCATCACCGGAGAACCTGACCGGCAGCATTAGGGT
* * * *
4833642 TCCGGTGATCGAG-GGGGCCGGGGTAGGTGTGCGCACAT-ATATGCGATGGGTGCTGGTACTTGG
644 TACGATGATC-AGTGGGGCCGGCG--GGTGTGCGCACATGATATGCGATGGGTGCTAGTACTTGG
*
4833705 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
706 CCCTTAGATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
4833770 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-TCTGAAATGGGGACACTTTTTTCAAAT
771 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG-GCTCTAAAATAGGGACACTTTTTTCAAAT
* * * *
4833834 GGTCACAAATTCTTGTACACTTCAAGTTTTTAGTTGAATTTTTTTGTGCATGCCAATAAAAATAG
835 GGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTACATGCCAATAAAAATAC
4833899 A
900 A
* * * * * *
4833900 AGGATCACATCTACCAAGTTAGGGG-CAAAACTCCTTCTGAAAAATTTTTGAAAAATCTCGAATC
1 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCACGAACC
** *
4833964 ACAAAAAGATTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
66 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
4834029 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAA
131 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC-AGAATATGAA
* * ** * * *
4834094 GATGTGCCTAAACCCACGTACCACTCTATCGATCCACGGGTTGCGCATCCCGTCTCTCTAGTCGG
195 GATGTGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCGCATCCCGTCTCTCTGGCCGG
* *
4834159 CGTAGTGCCCGCCCGCC-GACACC-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCA
260 AGTAGTGCCCGCCCGCCTGACACCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
*
4834222 TAGTCTAAAATCAGACCAGACTGAGGGTTGTAGCAGCA
325 TAGTCTAAAATCAGACCAGACTGAGGGTTGTGGCAGCA
4834260 CATGCTGGGC
Statistics
Matches: 1121, Mismatches: 121, Indels: 39
0.88 0.09 0.03
Matches are distributed among these distances:
898 6 0.01
899 535 0.48
900 309 0.28
901 20 0.02
902 126 0.11
903 122 0.11
904 3 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (900 bp):
AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCACGAACC
GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCGCATCCCGTCTCTCTGGCCGGA
GTAGTGCCCGCCCGCCTGACACCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCT
AGTCTAAAATCAGACCAGACTGAGGGTTGTGGCAGCAAGATCAGCAGCAACGAGAGGGGGACCAG
GCCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCCCCCGCACGCTCATTTCGTGG
GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
TCGACTAGACCGAGGGTTGCGACAGCAAATGCTGGGCTCAGGCATGTGCTGGTGTCACATTTTTC
TTCACCCGGGCACCATCACCAGAGCATCACCGGAGAACCTGACCGGCAGCATTAGGGTTACGATG
ATCAGTGGGGCCGGCGGGTGTGCGCACATGATATGCGATGGGTGCTAGTACTTGGCCCTTAGATT
GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGGCTCTAAAATAGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTACATGCCAATAAAAATACA
Found at i:4835118 original size:26 final size:26
Alignment explanation
Indices: 4835081--4835133 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4835071 GTTGACTTAG
*
4835081 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGCAGTTAATTCCCAGTCTAA
*
4835107 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTAATTCCCAGTCTAA
4835133 G
1 G
4835134 ATCAGACCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGCAGTTAATTCCCAGTCTAA
Found at i:4835669 original size:26 final size:26
Alignment explanation
Indices: 4835632--4835684 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4835622 GTTGATTTTG
*
4835632 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
4835658 GCATACGAAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
4835684 G
1 G
4835685 ATTCGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:4836566 original size:26 final size:26
Alignment explanation
Indices: 4836530--4836582 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4836520 GTTGACTTAG
*
4836530 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
4836556 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
4836582 G
1 G
4836583 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:4836918 original size:899 final size:898
Alignment explanation
Indices: 4835164--4837324 Score: 3024
Period size: 898 Copynumber: 2.4 Consensus size: 898
4835154 ACGGCAGCAC
* * * * * *
4835164 AGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCTAAAAAAAATTTAAAAAATCCCCAACT
1 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCACGAACC
* * *
4835229 GTAAAAAGTTTCGAAAATCGTGAAAAATAG-AAACAAGTCGTTCTTGCCATGAAACTTCACGTGA
66 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG-TCTTGCCATGAAACTTCACGTGA
**
4835293 AGGCTTAAGGGAGTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGATATATGA
130 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA-ATATGA
* *
4835358 AGATGTGCCTAAACCCACCGACCACCCTATTGATCCATAGCTTGCGCATCCCGTCTCTCTGGCC-
194 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * *
4835422 GACGTAGAGACCACCCGCCTGTCCGCCCGCTCGTTTCGTCGGTCGGCTTAGGCATACGGAGTTCA
259 GA-GTAGTGCCCGCCCGCC--T--GACCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* ** * **
4835487 TTCCTAGTCTAAATCAGACCAGACTGAGGGTTGCGATAGCAGGATCAGCAGCACGTAGAGGGGGA
319 TTCCTAGTCTAAATCAGACCAGACTGAGGGTTGTGGCAGCAAGATCAGCAGCACACAGAGGGGGA
* * * *
4835552 CCAGGCCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGGCCGGCTGAGCCCCCGCTCGCTCATTT
384 CCAGGCCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGGCCGGCTGAGCCCCCGCACGCTCATTT
* * * *
4835617 CGTTGGTTGATTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCATTCT
449 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCT
* *
4835682 AAGATTCGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCACAT
514 AAGATTCGACTAGACCGAGGGTTGCGACAGCAAATGCTGGGCTCAGGCATGTGCTGGTGTCACAT
* * * *
4835747 TTTTCTTCCCCCGGGCACCATCACCAGAGCATCGCCGGAGAACTTGACCGGTAGCATTAGGGTTA
579 TTTTCTTCACCCGGGCACCATCACCAGAGCATCACCGGAGAACCTGACCGGCAGCATTAGGGTTA
* *
4835812 CGATGATCAGTGGGGCCGGCGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTT
644 CGATGATCAGTGGGGCCGGCGGGTGTGCGCACATGATATGCGATGGGTGCTAGTACTTGGCCCTT
4835877 AGATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
709 AGATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
*
4835942 TTATAGGTTTGCTGCCAGTAGCCATTAAAGGCTCTAAAATAGGGACACTTTTTTCAAATGGTCAC
774 TTACAGGTTTGCTGCCAGTAGCCATTAAAGGCTCTAAAATAGGGACACTTTTTTCAAATGGTCAC
*
4836007 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAA-AAATAATACA
839 AAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTACATGCCAATAAA-AATACA
*
4836067 AGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCACGAACC
1 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCACGAACC
*
4836132 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAA
66 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
4836197 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGCAATATGAA
131 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG-AATATGAA
* * ** * *
4836262 GATGTGCATAAACCCACCTACCACCCTATCCATCCATAATTTACGCATGCCGTCTCTCTGGCCGG
195 GATGTGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCGCATCCCGTCTCTCTGGCCGG
* * *
4836327 AGTAGTGCCCGCCCGCCTG-CCGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCA
260 AGTAGTGCCCGCCCGCCTGACCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTA
* * * * *
4836391 ATCTAAGATCAGACC-GACCCGAGGGTTGTGGCAGCAAGATCGGTAGCACACAGAGGGGGACCCG
325 GTCTAA-ATCAGACCAGA-CTGAGGGTTGTGGCAGCAAGATCAGCAGCACACAGAGGGGGACCAG
* * * * * *
4836455 GTCAATCCCCGGCTTGCGCATCCCGCCCCTCT-GGCTGGTTGAGCGCCCGCACTCTCGTTTCGTG
388 GCCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGGCCGGCTGAGCCCCCGCACGCTCATTTCGTG
* *
4836519 GGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATAC-AGAGTTCATTCCTAGTCTAAG
453 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAG
* * * *
4836583 A-TCGGA-TCAGACCGAGGGTTGCGACAGCAAATGTTGGGCTCGGGCATGTGTTGGTG-CTGCAT
517 ATTC-GACT-AGACCGAGGGTTGCGACAGCAAATGCTGGGCTCAGGCATGTGCTGGTGTC-ACAT
* * ** * * * *
4836645 TTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTC
579 TTTTCTTCACCCGGGCACCATCACCAGAGCATCACCGGAGAACCTGACCGGCAGCATTAGGGTTA
* *
4836710 CGGTGATCGAG-GGGGCCGG-GGTAAGTGTGCGCACAT-ATATGCGATGGGTGCTGGTACTTGGC
644 CGATGATC-AGTGGGGCCGGCGG---GTGTGCGCACATGATATGCGATGGGTGCTAGTACTTGGC
*
4836772 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
705 CCTTAGATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
4836837 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-TCTGAAATGGGGACACTTTTTTCAAATG
770 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG-GCTCTAAAATAGGGACACTTTTTTCAAATG
* * * *
4836901 GTCACAAATTCTTGTACACTTCAAGTTTTTAGTTGAATTTTTTTGTGCATGCCAATAAAAATAGA
834 GTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTACATGCCAATAAAAATACA
* * * * * *
4836966 AGGATCACATCTACCAAGTTAGGGG-CAAAACTCCTTCTGAAAAATTTTTGAAAAATCTCGAATC
1 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCACGAACC
** *
4837030 ACAAAAAGATTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
66 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
4837095 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAA
131 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC-AGAATATGAA
* * ** * * *
4837160 GATGTGCCTAAACCCACGTACCACTCTATCGATCCACGGGTTGCGCATCCCGTCTCTCTAGTCGG
195 GATGTGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCGCATCCCGTCTCTCTGGCCGG
* *
4837225 CGTAGTGCCCGCCCGCC-GACAC-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCAT
260 AGTAGTGCCCGCCCGCCTGAC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCT
*
4837288 AGTCTAAAATCAGACCAGACTGAGGGTTGTAGCAGCA
324 AGTCT-AAATCAGACCAGACTGAGGGTTGTGGCAGCA
4837325 CATGCTGGGC
Statistics
Matches: 1118, Mismatches: 120, Indels: 45
0.87 0.09 0.04
Matches are distributed among these distances:
897 8 0.01
898 538 0.48
899 306 0.27
900 16 0.01
901 1 0.00
903 237 0.21
904 12 0.01
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (898 bp):
AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCACGAACC
GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCGCATCCCGTCTCTCTGGCCGGA
GTAGTGCCCGCCCGCCTGACCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAG
TCTAAATCAGACCAGACTGAGGGTTGTGGCAGCAAGATCAGCAGCACACAGAGGGGGACCAGGCC
AATCCCCGGCTTGCGCATCCCGCCCCTCTGGGCCGGCTGAGCCCCCGCACGCTCATTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTC
GACTAGACCGAGGGTTGCGACAGCAAATGCTGGGCTCAGGCATGTGCTGGTGTCACATTTTTCTT
CACCCGGGCACCATCACCAGAGCATCACCGGAGAACCTGACCGGCAGCATTAGGGTTACGATGAT
CAGTGGGGCCGGCGGGTGTGCGCACATGATATGCGATGGGTGCTAGTACTTGGCCCTTAGATTGG
CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
TTTGCTGCCAGTAGCCATTAAAGGCTCTAAAATAGGGACACTTTTTTCAAATGGTCACAAAATCT
TGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTACATGCCAATAAAAATACA
Found at i:4838101 original size:702 final size:700
Alignment explanation
Indices: 4836556--4838729 Score: 3174
Period size: 702 Copynumber: 3.1 Consensus size: 700
4836546 CCTAGTCTAA
* * * * *
4836556 GCATAC-AGAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTGC-GACAGCAAATGTTG
1 GCATACGA-AGTTCATTCC-AGTCTAAAATCAGACCAGACCGAGGGTTGCAG-CAGCACATGCTG
* * ** *
4836619 GGCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGA
63 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCCCGGGGCACCATCGTCGGAGCATCGCCGGA
* * * * *
4836684 GAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGAGGGGGCCGGGGTAAGTGTGCGCACAT-AT
128 GAACTTGACGGGCGGCATTAGGGTTCCGGCGATCG-GGGGGCCGGGG--GGTGTGCGCACATGAT
* *
4836748 ATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
190 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
4836813 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
4836878 AATGGGGACACTTTTTTCAAATGGTCACAAATTCTTGTACACTTCAAGTTTTTAGTTGAATTTTT
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * **
4836943 TTGTGCATGCCAATAAAAATAGAAGGATCACATCTACCAAGTTAGGGG-CAAAACTCCTTCTGAA
385 TTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
** * * *
4837007 AAATTTTTGAAAAATCTCGAATCACAAAAAGATTCAAAAATCATGAAAAATAGAAAACGAGTCGT
450 AAATTTTAAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAAT-----A--A-----
4837072 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
503 -TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
4837137 GCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACGTACCACTCTATCGATCCACGGGTT
567 GCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
4837202 GCGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCG-C-CCGCCGACAC-CTCGTTTCGTCGGTTGG
632 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCGCCG-CCCGCTCGTTTCGTCGGTTGG
4837264 CTTAG
696 CTTAG
* * * *
4837269 GCATACGGAGTTCATTCATAGTCTAAAATCAGACCAGACTGAGGGTTGTAGCAGCACATGCTGGG
1 GCATACGAAGTTCATTC-CAGTCTAAAATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
* *
4837334 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCCCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
*
4837399 ACTTGACGGGCGACATTAGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
130 ACTTGACGGGCGGCATTAGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
4837464 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
*
4837529 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAAATG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATG
4837594 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
4837659 GCATGCCAAAAAAAATACAAGGATCACTTCTACCAGGTTTGGGGCCAAAACTCCTTCCAAAAAAA
389 GCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAT
*
4837724 TTTAAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAAT-A-TGCCATGAAACTTCA
454 TTTAAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAATTGCCATGAAACTTCA
4837787 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAA
519 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAA
* *
4837852 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTATCT
584 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
*
4837917 GGCCGACGTAGTGCCCGCCTGCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
649 GGCCGGCGTAGTGCCCGCC-GCCG-CCGCCCGCTCGTTTCGTCGGTTGGCTTAG
*
4837971 GCATACGAAGTTCATTGCCAGTCTAAAATCAGACCAGACCGAGGGTTACAGCAGCACATGCTGGG
1 GCATACGAAGTTCATT-CCAGTCTAAAATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
*
4838036 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCCCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
4838101 ACTTGACGAGCGGCATTAGGGTTTCGGCGATCGGGGGGGCCGGGAGGTGTGCGCACATGATGTGC
130 ACTTGACGGGCGGCATTAGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
4838166 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
4838231 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
** *
4838295 GGGACACTTTTTTCAAATTTTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
4838360 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTCTGGGGCCAAAACTTCTTCCGACAAAA
389 GCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAA
*
4838425 TTTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGTGTCGTCTT
453 TTTTAAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAAT----AA---------TT
** *
4838490 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACAAATATACAAGCCATAAAAATGGCA
505 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
4838555 TTGGAATGCAAAAATATGAAGATGTGCCTAAACCGACCTACCACCCTATCGATCCACGGCTTGCG
570 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
4838620 CATCCCGTCTCTCTGGCCGGTGTAGTG--C-CCG-C-CCGCCCGCTCGTTTTGTCAGTTGGCTTA
635 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTA
4838680 G
700 G
* * * *
4838681 GCATTA-GGAGTTCATTCCCAGTCTAAGATCAGACCAGGCTGAGGGTTGC
1 GCA-TACGAAGTTCATT-CCAGTCTAAAATCAGACCAGACCGAGGGTTGC
4838730 GGCTACAGGA
Statistics
Matches: 1338, Mismatches: 93, Indels: 63
0.90 0.06 0.04
Matches are distributed among these distances:
698 154 0.12
699 1 0.00
701 120 0.09
702 228 0.17
703 156 0.12
705 1 0.00
707 1 0.00
710 79 0.06
711 130 0.10
712 118 0.09
713 197 0.15
714 3 0.00
715 1 0.00
717 149 0.11
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (700 bp):
GCATACGAAGTTCATTCCAGTCTAAAATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCCCCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
CTTGACGGGCGGCATTAGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTT
TAAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAATTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCGGCGTAGTGCCCGCCGCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:4838870 original size:26 final size:26
Alignment explanation
Indices: 4838840--4838892 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4838830 GTTCACTTAG
*
4838840 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
4838866 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4838892 G
1 G
4838893 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4839777 original size:26 final size:26
Alignment explanation
Indices: 4839741--4839793 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4839731 GTTGACTTAG
4839741 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4839767 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4839793 G
1 G
4839794 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4839861 original size:901 final size:893
Alignment explanation
Indices: 4837971--4840671 Score: 3805
Period size: 901 Copynumber: 3.0 Consensus size: 893
4837961 GTTGGCTTAG
* * * * * * *
4837971 GCATACGAAGTTCATTGCCAGTCTAAAATCAGACCAGACCGAGGGTTACAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* *
4838036 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCCCCGGGGCACCATCG-TCGGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTG-CGCATTTTTCTTCCCCGGGGCACCATCGCT-GGAGCATCGTCGGAG
* *
4838100 AACTTGACGAGCGGCATTAGGGTTTCGGCGATCGGGGGGGCCGGGAGGTGTGCGCACATGATGTG
129 AACTTGACG-GCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
4838165 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
4838230 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** *
4838295 -GGGACACTTTTTTCAAATTTTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
4838359 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTCTGGGGCCAAAACTTCTTCCGACAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA-AAA
* * * *
4838424 ATTTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGTGTCGTCT
452 AATTTAAAAAAATCTCGAATCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
** *
4838489 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACAAATATACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
4838554 ATTGGAATGCAAAAATATGAAGATGTGCCTAAACCGACCTACCACCCTATCGATCCACGGCTTGC
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
4838619 GCATCCCGTCTCTCTGGCCGGTGTAGTGCC-CGCCCGCCCGCTCG-TTTTGTCA---GTTGGCTT
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCG-CCGCCCGC-CGCTTTT-TCATCGGTTGGCTT
* * *
4838679 AGGCATTA-GGAGTTCATTCCCAGTCTAAGATCAGACCAGGCTGAGGGTTGCGGCTA-CAGGATT
709 AGGCA-TACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACTGAGGGTTGCGG-TAGTAGGATC
* ** ** * * *
4838742 GGCAGCGTGCAGAGGGGGACCCGGTCGATCCCCGGCTTGGGCAT-CCTACCCTTCTGGCCGACTG
771 GGTAGCACGC-GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCT-CCCCTCTGGCCGGCTG
* * * **
4838806 AGCGCTCGCACGCTCGTTTCATGGGTTCACTTAGGCATATAGAGTTCATTCCCAGTCTAA
834 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
4838866 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
*
4838931 CTCGGGCATGTGCTGGTGC-CATTTTTTTCTTCCCCGAGGCACCATCGCTGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCGCA--TTTTTCTTCCCCGGGGCACCATCGCTGGAGCATCGTCGGAG
* * * * *
4838995 AACCTAACCGGCGGCATTACGGTTCCGGCGAT-AGGGGGGCCGGGGGGTGTGCGCACATGATGTT
129 AACTTGA-CGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
4839059 CGATGGATGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * *
4839124 ACCCCCTTAAAGAGCATTTCAGATTCTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
4839189 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** *
4839254 TGCATGCCAA-AAAAATACAAGGATCACGTCTACTAAGTTTGGGGAAAAAAATCCTTCCGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
4839318 ATTTAAAAAAATCTCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
453 ATTTAAAAAAATCTCGAATCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
4839383 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
4839448 TTGGCATGCGGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTCCG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
4839513 CATCCCGTCTCTCTGGCCGGCGTAGTGCTCGTACGCCAGCCCGCCAGCTTGTTTCATCGGTTGGC
648 CATCCCGTCTCTCTGGCCGGCGTAGTGC-CG--CGCC-GCCCGCC-GCTT-TTTCATCGGTTGGC
*
4839578 TTAGGCATACGAAGTTCATTCTCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGTAGGATC
707 TTAGGCATACGGAGTTCATTC-CAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGTAGGATC
* * * * *
4839643 GGTAGCACACGGAGGAGGACCCGACCGATCCCCGGCTTGCGCATCCCTCCCCTCTAGCCGGTTGG
771 GGTAGCACGC-GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCTCCCCTCTGGCCGGCTGA
*
4839708 GTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
4839767 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACATAGGGTTGCGGTAGCAAATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
** ***
4839832 CTCAAGCATGTGCTGGTGCTGCATTTTTCTTCGTTGGGGCACCATCGCTGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGC-GCATTTTTCTTCCCCGGGGCACCATCGCTGGAGCATCGTCGGAGA
* * * *
4839897 ACTTGACGGACGGCATTGGGGTTCCGGCGGTCGGGGGGGCTGGGGGGTGTGCGCCCATGATGTGC
130 ACTTGACGG-CGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
4839962 GATGGGCGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAGCCTTGAGAGCTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* *
4840027 -CCCTTTAAAGAGCATTTGAGATTTTACCGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
4840091 GGGACACTTTTATCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTCAGCTGATTTTTTTTTG
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTTG
* * *
4840156 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAAAACTCTTTTCGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * ** *
4840221 ATTTAAAAAAATCTCGAATCACAAAAATTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTT
453 ATTTAAAAAAATCTCGAATCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
** **
4840286 GCCATGAAACTTCTTGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAATTTGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
4840351 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACTAGCCTAT-GATTCACGGCTTGCG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
4840415 CATCCCGTCTCTCTAGCCGGCATAGTGCCCGCCCGCTCGCCCACCCGCACGTTCATTTCGTCGGT
648 CATCCCGTCTCTCTGGCCGGCGTAGTG-CCG--CGC-CGCCC-GCCG--C-TT--TTTCATCGGT
* * * *
4840480 TGGCTTAGGCATACGGAGTGCATTGCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAG
703 TGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGTAG
* * * * * *
4840545 GATCGGTAGCACGCAAGGGGGAGCCGACCGATCCCCAGCTTGCACATCTCACCCCTCTGGCC-GC
767 GATCGGTAGCACGCGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCTCCCCTCTGGCCGGC
* * *
4840609 TGAGCGCCCGTACGCTCATTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
832 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
4840671 G
1 G
4840672 ACCGGATCGG
Statistics
Matches: 1613, Mismatches: 159, Indels: 59
0.88 0.09 0.03
Matches are distributed among these distances:
893 213 0.13
894 199 0.12
895 208 0.13
896 6 0.00
897 9 0.01
898 5 0.00
899 2 0.00
900 8 0.00
901 405 0.25
902 156 0.10
903 219 0.14
904 60 0.04
905 42 0.03
906 80 0.05
907 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCGCATTTTTCTTCCCCGGGGCACCATCGCTGGAGCATCGTCGGAGAA
CTTGACGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TAAAAAAATCTCGAATCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCGCGCCGCCCGCCGCTTTTTCATCGGTTGGCTTAGGCATA
CGGAGTTCATTCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGTAGGATCGGTAGCACGC
GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:4841684 original size:26 final size:26
Alignment explanation
Indices: 4841648--4841700 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4841638 GTTGACTTAG
4841648 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
4841674 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
4841700 G
1 G
4841701 ATCAGCCCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:4844087 original size:701 final size:707
Alignment explanation
Indices: 4841889--4844491 Score: 3705
Period size: 706 Copynumber: 3.7 Consensus size: 707
4841879 CCTTATATTG
* * *
4841889 GCATTTGAGATTTTTCAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTCTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
4841954 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTG-ATTTTTTTTTGCATGCCAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* * * * *
4842018 GAATACAACGATCATGTCTGCCATGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATC
131 AAATACAAGGATCACGTCTACAATGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATC
* * * *
4842083 TCGAACCATAAAAAGTTTCAAAAATCATGAAAAATA-AAAAACGAGTCGTCTTGCCATGCAACTT
196 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAACGAGTCGTCTTGCCATGAAACTT
* * * * *
4842147 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCACGTAGA
261 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCATGCAAA
* *
4842212 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAACTTGCGCATCCTGTCTCT
326 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCT
* * *
4842277 CTGGCCGACATAGTGCCCGCACGCCCGCCCGCCCGTTCATTTTGTCGGTTGGCTTAGGCATACGG
391 CTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTT-ATTTTGTCGGTTGGCTTAGGCATACGG
* * * ** * *
4842342 AGTTCATTCCCAGTCTAAAACCGGATC-AGACTGAGGGTTGCTACAGCACATGCTGGGCTCGAGC
455 AGTTCATTCCCAGTCTAAGATCGGACCGA-ACCAAGGGTTGCTGCAGCACATGCTGGGCTCGGGC
* * *
4842406 ATGTGCTAGTGCCGTATTTTTCTTCGCCGAGG---CATCGTCAGAGAACCTGACCGACGGCATTG
519 ATGTGCTAGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGACGGCATTG
* * * *
4842468 GGGTTCTAGCCATCGGGGGGGCCAAGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTAGTACT
584 GGGTTCCAGCGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
4842533 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGACAACTCACACCCCCTTAAAAA
647 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAA
* * *
4842594 ACATTTGAGATTTTACAGGTTTTGCTACCAGTAGCCATTAAAGTGTCT-AGAATGGGGGCACTTT
1 GCATTTGAGATTTTACAGG-TTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTT
** * *
4842658 TTTCAAATTCTCACAAAATCTTGTACACTTCCAGTTTTTAGCT-AATTTTTTTGTGCATGCCAAC
64 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* *
4842722 AAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACCCCTTTCGAAGAAATTTTAAAAA
129 AAAAATACAAGGATCACGTCTA-CAATGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAA
*
4842786 ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG-AAAACGAGTCGTCTTGCCATGCAA
193 ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAACGAGTCGTCTTGCCATGAAA
*
4842850 CTTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCACAAAAATGGCATTGGCATGC
258 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCATGC
* * *
4842915 AGAAATATGAAGATGTACCTAAACCCACCTAGCACCCTATCGATCCACGACTTGCGCATCCCGTC
323 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTC
* * * * *
4842980 TCTCTGGCCGGCGTAGTGCCCGCCTGCTCGCCCGTTCGCTTGTTTTGTCGGTTGGCTTAGGCATA
388 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCG-TTATTTTGTCGGTTGGCTTAGGCATA
* * * *
4843045 CGGAGTTCATTCCCAATCTAAGATCGAGTCAG-ACCAAGGGTTG-TGACAGCACATGTTGGGCTC
452 CGGAGTTCATTCCCAGTCTAAGATCG-GACCGAACCAAGGGTTGCTG-CAGCACATGCTGGGCTC
* * * * *
4843108 GGGCATGTGTTGGTACCGGATTTTTCTTCGTCGGGGCACCATCGTCGAAGAACCTGACCGACGGC
515 GGGCATGTGCTAGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGACGGC
* * **
4843173 ATTGGGCTTCC-GACGATCGGGGGGGTCGAGGGGGGTGTGCGCACATGATGTGTAATGGGTGCTG
580 ATTGGGGTTCCAG-CGATCGGGGGGG-C-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
4843237 GTACTTGGCCCTTATATTGTCCCCCTATCCC-AATTCAAACCTCGAGAACTCACACCCCCTTAAA
642 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCA-TCAAACCTCGAGAACTCACACCCCCTTAAA
4843301 AA
706 AA
*
4843303 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
4843368 TCAAATGATCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* * * *
4843433 AAATGCAAGGATCATGTCTACAAGGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
131 AAATACAAGGATCACGTCTACAATGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATC
* * ** * * *
4843498 TCGAACTGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAATGAGTCATCTTGCCAAGAAACTT
196 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAACGAGTCGTCTTGCCATGAAACTT
4843563 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCA-G-ATA
261 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCATGCA-A
* ** *
4843626 AAATATGGAGATGTGCCTAAACTTACCTACCACCCTATCGATCCGTCG-CTTGCGCATCCCGTCT
325 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC-ACGACTTGCGCATCCCGTCT
** * * *
4843690 CTCTCCCCGACGTAGTGCCCGCCCGCCCGCCCGCTCG-T-TTCT-TCAGTTGGCTTAGGCATATG
389 CTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTATTTTGTCGGTTGGCTTAGGCATACG
* * *
4843752 AAGTTCATTCCCAGTCTAAGATTGGACCGAACCAACGGTTGCTGCAGCACATGCTGGGCTCGGGC
454 GAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTGCTGCAGCACATGCTGGGCTCGGGC
*
4843817 ATGTGC-ATGTGCCGTATTTTT-TTCGTCGGGGCACCATCGTCGGAGAACCTGACCGACGCCATT
519 ATGTGCTA-GTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGACGGCATT
* * * *
4843880 GGGGTTCCAGTGAT-TGGGGGGCCGGGGGGTGTGCACACAAGATGTGCGATGGGTGCTGGTACTT
583 GGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
4843944 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
648 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAA
* * * *
4844004 GCATTTGAGATTTTATAGGTTTGCTGCCAGTAGGCATTAAAGTGTCTGAAATGGGGATAGTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
4844069 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAGAAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* * *
4844134 AAATACAAGGATCACGTCTACCATGTTTGTGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
131 AAATACAAGGATCACGTCTACAATGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATC
* *
4844199 CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAG-AAAACAAGTCGTCTTGCCATGAAACTT
196 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAACGAGTCGTCTTGCCATGAAACTT
*
4844263 CACGTGAAGGCTTAAGGGACCATT-TATGAATTTACAAGCCACAAAAATGGCATTGGCATGCAGA
261 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCATGCAAA
*
4844327 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCTGTCTCT
326 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCT
* * * * * *
4844392 CTGGCCGGCTTAGTGCCCGCCCGCCCACCCGCTC---AGTTTGTCGGTTGGCTTAGGTATATGGA
391 CTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTATTTTGTCGGTTGGCTTAGGCATACGGA
* *
4844454 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
456 GTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTT
4844492 ACGGTAGCAA
Statistics
Matches: 1693, Mismatches: 173, Indels: 69
0.87 0.09 0.04
Matches are distributed among these distances:
699 38 0.02
700 188 0.11
701 308 0.18
702 2 0.00
703 6 0.00
704 53 0.03
705 105 0.06
706 467 0.28
707 6 0.00
708 84 0.05
709 352 0.21
710 84 0.05
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (707 bp):
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
AAATACAAGGATCACGTCTACAATGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATC
CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCATGCAAA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCT
CTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTATTTTGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTGCTGCAGCACATGCTGGGCTCGGGCAT
GTGCTAGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGACGGCATTGGG
GTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAA
Found at i:4846960 original size:26 final size:26
Alignment explanation
Indices: 4846924--4846976 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4846914 GTTGACTTAG
**
4846924 GCATACGGAGTTCATTCGTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4846950 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4846976 G
1 G
4846977 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4847857 original size:26 final size:26
Alignment explanation
Indices: 4847817--4847867 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
4847807 GTTGACTTAG
4847817 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
4847843 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGCTCATTCCCAGTCTA
4847868 GGATCGGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:4848407 original size:903 final size:897
Alignment explanation
Indices: 4846047--4848612 Score: 3730
Period size: 893 Copynumber: 2.9 Consensus size: 897
4846037 GTTGACATAG
* * ***
4846047 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAAGGTTGTGGCAGCACATGCTGGG
* * *
4846112 CTCAGGAATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCAT--TCGGAGCATCG-C-GAGA
* * * * *
4846177 ACTTTG-TCGATGGCATTGGGGTTCCGAAGATCGGGTGGG-CTGGGGGGCGTGCGCACATGATGT
127 AC-CTGACCGACGGCATTGGGGTTCCGAAGATCGGG-GGGCCAGGGGGGAGTGCGCACATGATGT
* *
4846240 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCAAGAACTCA
190 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
4846305 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
255 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
4846370 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
320 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
4846435 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCATAACTCCTTCCAAAAA
385 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * ** *
4846500 AAATTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATTGTAAAAAATAGAAAACGAGTCATCT
450 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGAGTCGTCT
* *
4846565 TGCCTTGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGC
*
4846630 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGC
580 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
** * * * * *
4846695 GCATCCCGTCTCTCTGGCC-GATGTAACGCCCGCCTGCCCACCCACTCGTTTGTTTCGTCGGTTG
645 GCATCCCGTCTCTCTGGCCAG-TGTAGTGCCCGCCCG-CCACCCACCCGCTCGTTTCGTCGATTG
** * * *
4846759 GCTTAGGCATACGGAGTTCATTAGCAGTCTAAGATCAGACCGGACCGAGAGTTGCGGTAGTAGGA
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG-GTTGCGGCAGCAGGA
* * * * * *
4846824 TCGGCAGCACGTAGAGGGAGACCCAGCCAATCCCCGGCTTGCGTATCCCGCCCCTCTGGCTGGCT
772 TCAGCAGCACGAAAAGGGAGACCCAGCCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCT
* * **
4846889 GAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCGTAGTCTAA
837 GAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAA
* *
4846950 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-TCG-AGGTTTGTGGCAGCACATGCTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-GAAGG-TTGTGGCAGCACATGCTG
* *
4847013 GGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCA-TC---GC-T-G-GAGAAC
64 GGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATTCGGAGCATCGCGAGAAC
* * * * *
4847071 CTGACCGACGGCATTGGTGTTTCGATGATCGGGGGGCCGGAGGGGGGTGTGCGCACATGATGTAC
129 CTGACCGACGGCATTGGGGTTCCGAAGATCGGGGGGCC--AGGGGGGAGTGCGCACATGATGTGC
* *
4847136 GAT-GGTGCTGGTGCTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACA
192 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
4847200 CCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGACTGAAATG
257 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * *
4847265 GGGACACTTTTTTCAAATGGTGACAAAATCTTGTACACTTTGAGTTTTCAGCTGATTTTTTTTGG
322 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
4847330 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
387 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
*
4847395 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
452 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGAGTCGTCTTG
* * *
4847460 CCGTTAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCAT
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCAT
* * *
4847525 TGGCATGCATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
582 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
* *
4847590 ATCCCGTCTCTCTGGCCAGTGCAGTGCCCGCCCGCCTACCCACCCGCTCGTTTCGTCGATTAGCT
647 ATCCCGTCTCTCTGGCCAGTGTAGTGCCCGCCCGCC-ACCCACCCGCTCGTTTCGTCGATTGGCT
*
4847655 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAATGGTTGCGGCAGCAGGATCA
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA-GGTTGCGGCAGCAGGATCA
* * * *** * * * *
4847720 GCAGCACGAAAAGGGTGACTCGGTTGATCCCTGACTTGTGCATCCTGCCCCTTTGGCCGGCTGAG
775 GCAGCACGAAAAGGGAGACCCAGCCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
*
4847785 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAA
840 CGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAA
* *
4847843 GCATACGGAGTTCATTCCCAGTCTAGGATCGGATCAGACTGAAGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAAGGTTGTGGCAGCACATGCTGGG
* ** *
4847908 CTCTGGCATGTGCTGGTGCTATATTTTTCTTCA-CTGGGGTACCATTACTGGAGCATCGCCTGAG
66 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCATC-GGGGCACCATT-C-GGAGCATCG-C-GAG
* * *
4847972 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCAAGGGGGAGTGCGCACATGATTTG
126 AACCTGACCGACGGCATTGGGGTTCCGAAGATCGGGGGGCCAGGGGGGAGTGCGCACATGATGTG
*
4848037 CGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
191 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
4848102 ACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCGATTAAAGTGTCTGAAAT
256 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
4848167 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTG
321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
4848232 TGCATGCCAACAGAAATACAAGGATAACGTCTGCCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
386 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
4848297 ATTTTAAAAAAACCCGAACCGCACAAAGTTTCAAAAATCATAAAAAATTGAAAACGAGTCGTCTT
451 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGAGTCGTCTT
* *
4848362 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCA
* * *
4848427 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCAC-ATCTTAC
581 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA-CTTGC
* * * *
4848491 GCATCCCGTCACTCTGGCCAGCGTAGTGCCTG--C-CCACCCGCCCGCTCGTTTCGTCGATTGGC
645 GCATCCCGTCTCTCTGGCCAGTGTAGTGCCCGCCCGCCACCCACCCGCTCGTTTCGTCGATTGGC
4848553 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGACCGACGGTTGCGGCAGCA
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGA-GGTTGCGGCAGCA
4848613 CATGTTGGGC
Statistics
Matches: 1494, Mismatches: 143, Indels: 56
0.88 0.08 0.03
Matches are distributed among these distances:
891 5 0.00
892 34 0.02
893 724 0.48
894 32 0.02
895 2 0.00
896 1 0.00
897 2 0.00
898 1 0.00
899 83 0.06
900 4 0.00
901 2 0.00
902 26 0.02
903 537 0.36
904 41 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAAGGTTGTGGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATTCGGAGCATCGCGAGAACCT
GACCGACGGCATTGGGGTTCCGAAGATCGGGGGGCCAGGGGGGAGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
AAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGC
ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCC
CGTCTCTCTGGCCAGTGTAGTGCCCGCCCGCCACCCACCCGCTCGTTTCGTCGATTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGTTGCGGCAGCAGGATCAGCAGCA
CGAAAAGGGAGACCCAGCCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
CACACTCATTTCGTGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAA
Found at i:4851767 original size:26 final size:26
Alignment explanation
Indices: 4851731--4851783 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
4851721 GTTGACTTAG
4851731 GCATACGGAGTTCATT-CCTAGTCTAA
1 GCATACGGAGTTCATTACC-AGTCTAA
*
4851757 GCATATGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
4851783 G
1 G
4851784 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:4851975 original size:897 final size:881
Alignment explanation
Indices: 4849961--4852507 Score: 3545
Period size: 899 Copynumber: 2.8 Consensus size: 881
4849951 GTTGGCTTAG
* * *
4849961 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGG
4850026 CTCGGGCAAT-TGCTGGTGC--CGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCAG
66 CTCGGGC-ATGTGCTGGTGCTACG--TTTTTCTTCGTCGGGGCACCATCGCCGGAG-A--A-C--
* *
4850088 AGAACTTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGA
122 ----C-TGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCG-GGGGGGTGTGCGCACATGA
4850153 TGTGCGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
181 TGTGCGATGGGTGCTGGTACTTGG--C-TTTATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
4850218 TCATAGCCCCTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
243 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
4850283 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGT
308 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
4850348 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAGGTTTGGGCCAAAACTCCGT-CAAA
373 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGCCAAAACTCCTTCCAAA
* *
4850412 AAAATTTTTAAAAATCCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCA
438 AAAATTTTAAAAAATCCC-GAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCA
* *
4850477 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAACCCATAAAAAT
502 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
4850542 GGTATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
567 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * **
4850607 TGCGTATCCCATCTCTCT-CTCCGCATAGTGCCCGCCTGCCCACCCATTCGTTTCATCGGTTGGC
632 TGCGCATCCCATCTCTCTGGTCGGCATA--G--CGCCTGCCCGCCCGCTCGTTTCATCGGTTGGC
*
4850671 TTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTACGGCAGCAAGATC
693 TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTACGGCAGCAAGATC
* * *
4850736 GACAGCATGTAGAGGCGGACCCGGTCGATCCTCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGA
758 AACAGCACGTAGAGGCAGACCCGGTCGATCCTCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGA
* *
4850801 GCGCCCGCACGCTCGTTTTGTGAGTTGACTTAGGCATACGGAGTTCATTCCTAGTTTAA
823 GCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * * *
4850860 GCACACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACCAAAGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGACAGCACATGCTGG
* * *
4850924 GCTCGGGAATGTGCT-G-GCATCACATTTTTCTTCGTAGGGGCACCATCACCGGAGCATCGTCGG
65 GCTCGGGCATGTGCTGGTGC-T-ACGTTTTTCTTCGTCGGGGCACCAT---C---G---C--CGG
* *
4850987 AGAACCTGACCAGCGGCATTGGGGTTCCGACGATCAGTGGGGGCAC-GGGGGGTGTGCGCACATG
117 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GAGGGGGC-CGGGGGGGTGTGCGCACATG
* * * * *
4851051 ATGTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGACTCGTATCCCTCATCAAACCTCAAGAA
180 ATGTGCGATGGGTGCTGGTACTTGG--CTT-TATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
4851116 CACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTAGCTACCAGTAGCCATTAAAGTGTCT
242 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
4851181 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
307 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
4851246 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACTAGGTTTGCAGCCAAAACTCCTTCCG
372 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTG-GGCCAAAACTCCTTCCA
* *
4851311 AAAAAATTTAAAAAAATCCCGAACCGTAAAAACTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
436 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
* * *
4851376 GTATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAA
501 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*** *
4851441 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGGC
566 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
4851506 TTGCGCATCCCGTCTCTCTGGTCGGCGTAGCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
631 TTGCGCATCCCATCTCTCTGGTCGGCATAGCGCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
* * * ** *
4851571 GGCATACGGAGGTCATTCCCAGTCTAAGATCGGACCGGA-CTGAGGGTTGTGGCAGCAGGATCAA
696 GGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGATC-GAGGGTTACGGCAGCAAGATCAA
* ** *
4851635 TAGCACGTAGAGGCAGACCCGGTCGATCC-CTGGCTTGTGCATCCCGCCCCTTTGGCCGGCTGAG
760 CAGCACGTAGAGGCAGACCCGGTCGATCCTC-GGCTTGCACATCCCGCCCCTCTGGCCGGCTGAG
*
4851699 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
824 CGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* *
4851757 GCATATGGAGTTCATTACCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGG
** *
4851822 CTCAAGCATGTGCTGGTGCTACGTTTTTCTTCATCGGGGCACCATCGCCGGAGAACCTGACCGGC
66 CTCGGGCATGTGCTGGTGCTACGTTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGGC
* ** * *
4851887 GACATTGGGGTTCCGGTGTTCGAGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
131 GGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
4851952 GGTACTTGGCAATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAA
196 GGTACTTGGC--TT-TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * *
4852017 GAGCATTTGAGATTTTACAGGTTTGCTGGCAATAGCTACTAAAGTGTCTGAAATGGGGACACTTT
258 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
4852082 TTTCAAATGGTGACAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-
323 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * *
4852146 AAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCAAAAAAATTTTAAAACA
388 AAAAATACAAGGATCACGTCTACCAGGTTT-GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
** * *
4852211 TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACT
452 TCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
* *
4852276 TCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAA
517 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
* *
4852341 AAATATGAAGAGGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT-CGCATCCCATCTC
582 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTC
* * *
4852405 TCTGGTCGGCATAGTGCCTGCCCACCCACCCGCCCGCTCATTTCATCAGTTGGCTTAGGCATACG
647 TCTGGTCGGCATAGCGCCTG--------CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
*
4852470 AAGTTCATTCCCAATCTAAGATCGGACCAGATCGAGGG
704 AAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGG
4852508 ATGCGGGGAG
Statistics
Matches: 1468, Mismatches: 139, Indels: 90
0.87 0.08 0.05
Matches are distributed among these distances:
883 31 0.02
884 221 0.15
885 217 0.15
886 33 0.02
888 1 0.00
891 67 0.05
892 1 0.00
894 1 0.00
896 2 0.00
897 288 0.20
898 9 0.01
899 359 0.24
900 200 0.14
901 27 0.02
902 1 0.00
905 1 0.00
906 1 0.00
907 1 0.00
908 1 0.00
909 1 0.00
910 5 0.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (881 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCTACGTTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCTGACCGGC
GGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCTTTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAGGTTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCC
GAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTG
GTCGGCATAGCGCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCC
AGTCTAAGATCGGACCAGATCGAGGGTTACGGCAGCAAGATCAACAGCACGTAGAGGCAGACCCG
GTCGATCCTCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGA
GTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
Found at i:4854172 original size:26 final size:26
Alignment explanation
Indices: 4854143--4854221 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
4854133 GTTGACTTAG
* *
4854143 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
4854169 GCATATGGAATTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4854195 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4854221 G
1 G
4854222 ATCGGATCGG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4854655 original size:907 final size:887
Alignment explanation
Indices: 4852514--4857567 Score: 5712
Period size: 905 Copynumber: 5.7 Consensus size: 887
4852504 AGGGATGCGG
* * * *
4852514 GGAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATC-GAGGAGCAGGGGGGTGTGCGCACATGA
1 GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
* * *
4852578 AGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAG
66 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
4852643 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
131 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
4852708 AAATGGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTT
196 AAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
4852773 TTTTGTGCATGCCAACAAAAATACAAGGATAATGTCTACCAAGTTTGGGGCCTAAACTCCTTACG
260 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * *
4852838 AAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTC
325 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* * *
4852903 GTCTTGCCATGAAACTTCAGGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCACAAAAA
390 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * * * *
4852968 TGGCATTGGCATGTAGAAATATGAGGATGTGGCTAAACCCACGTACCATCCTATCAATCCACGGC
455 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
4853033 TTGCGCATCCCGTCTCTCTGGCCGGTATAGT-GCCCGTCCGTCCGCTCGTTT-GTCGGTTGGCTT
520 TTGCGCATCCCGTCTCTCTGGCC-G-A-CGTAGCCCGCCCG-CCTCTCGTTTCGTCGGTTGGCTT
* * * * *
4853096 AGGCATACAGAGTTCATTCCCAGTCTAAGATTAGA-TAGGACCGAGGGTTGTGGCAACAGGATCG
581 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACCGAGGGTTGCGGCAGCAGGATCG
* ** * * *
4853160 GTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCAGAG
645 GTAGCAC-CAGAGGGGGACCCGATCGATCCCTAGCTTGCGCTTCCCACCCCTCTGGCCGGCTGAG
** * * *
4853225 CGCCCGCAAGCTCATTTCGTGGGTTAACTCAGGCATACG----G---A-G--TTCATTCCCAGTC
709 CGCCCATACGCTCATTTCGTGGGTTGACTTAGGCATACGCATAGCATAGGAATTCATTCCCAGTC
* * * * *
4853280 TAAGCATACGGAGTTCATTCCCAGTCGAAGATGGGACCGGACCGACGGTTGCGACAGCACATGCT
774 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGGCAGCACATGCT
* * * * * *
4853345 AGGCTTGGGCATGTGCTGGTGCCACATTTTTCATCATCGGGGCACCATAGCCGGAGCAACGCC
838 GGGC-TCGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCAT-----------CGTC
** ** * *
4853408 GGAGAACCTGACCAACAACATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTTCGCACATGA
1 GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
* * * *
4853472 TGCGCAATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAG
66 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
4853537 TCACACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
131 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
4853602 AAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTT
196 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * *
4853667 TTTGCT-CATGCCAACAAAGATACAAGGATCACGGCTACCAAGTTTGGGGCCAAAAATGCATCCG
261 TTTG-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * ** *
4853731 AAAAAATTTTTAAAAATCTTGAACCGCAAAACA-TTTTGAAAATCGTGAAAAATAGAAAACGAGT
325 AAAAAATTTTAAAAAATCTCGAACCGCAAAA-AGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* *
4853795 TGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAA
389 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * * * * *
4853860 ATGGCATTGGCACGTAGAAATATGAGGATGTGGCAAAACCCACGTACCATCCTATCAATCCACGG
454 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
** *
4853925 CTTGCGCATCCCGTCTCTCTGGCCG-CCCA-CCCGCCCG-CT-T-GTTTCGTCGGTTGGCTTAGA
519 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGCCCGCCCGCCTCTCGTTTCGTCGGTTGGCTTAGG
* * * * *
4853985 CATACGGAGTTCATTCCAAGTCTAAGATCGGACCAGATCGAGGGTTGTGGCAGCAGGATTGGTAG
584 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAG
* **
4854050 CACCCAGAGGGGGACCCGACCGATCCC-AGGCTTGCGCTTCCTGCCCCTCTGGCCGGCTGAGCGC
649 CA-CCAGAGGGGGACCCGATCGATCCCTA-GCTTGCGCTTCCCACCCCTCTGGCCGGCTGAGCGC
* *
4854114 CCATAGGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATATGGAA
712 CCATACGCTCATTTCGTGGGTTGACTTAGGCATAC---G--------C-A--T-AGCATA-GGAA
*
4854179 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATGGACTGAGGG
761 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-C--A--GACCGAGGG
*
4854244 TTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGCTGCCGCATTTTTCTTCGTCAGGGCACCAT
821 TTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCAT
4854309 CGTC
884 CGTC
* *
4854313 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCACAT
1 GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC--GGGGGGTGTGCGCACAT
*
4854378 GATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGA-A
64 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
4854442 ACTCACACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
129 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
4854507 TAAAATTGCGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
194 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
4854572 TTTTTGTGCATCCCAACAAAAATACAAGGATCACGTCTACCAAGGTTGGGGCCAAAACTCCTTTC
259 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* ** *
4854637 GAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACTAGT
324 GAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* *
4854702 -GTCTTGCCATGAAACTTCACGTGAACGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAA
389 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
4854766 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGG
454 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* *
4854831 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCATCTGCCTGCTCGTTTCGTCGATTG
519 CTTGCGCATCCCGTCTCTCTGGCCGACGTA--GCCCG-CC--C-GCCT-CTCGTTTCGTCGGTTG
* * * * *
4854896 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTACGGTAGTAGGA
577 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
* * ** * *
4854961 TCGGTAGCACGCAGAAGGGGACCCGGTCGATCCCCGGCTTGCGCTTCCTACCCCTCTGGCCGACT
642 TCGGTAGCAC-CAGAGGGGGACCCGATCGATCCCTAGCTTGCGCTTCCCACCCCTCTGGCCGGCT
** * *
4855026 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA--C---G-A-A-G--TTCATTCCCA
706 GAGCGCCCATACGCTCATTTCGTGGGTTGACTTAGGCATACGCATAGCATAGGAATTCATTCCCA
* * *
4855081 GTCTAAG-AT-C--AG---A-T--C-G-----GA-C---CGGACCGAGGGTTACCGCAGCACATG
771 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGACCGAGGGTTGCGGCAGCACATG
* * *
4855126 CTGGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGCCATGGCCCCATCGTCGGAGCATCGTC
836 CTGGGCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTC--GG-------G-C--ACCATCGTC
* * * * * *
4855191 GGAGAACCTGACCGGCGGCATTAGTGTTTCGGCGATC-GGGGGGCTGGGGGGCGTGCGTACATGA
1 GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
* * **
4855255 TGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAATCTTAAGAAC
66 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
4855320 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGACACTAAAGTGTCTG
131 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
4855385 AAAT-------C-----T----T-GT-AC---A-C-T-T---C--C-AGTTTTTAGCTCAATTTT
196 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
4855420 TTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAA
261 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * *
4855484 AAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCG
326 AAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
4855549 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
391 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * **
4855614 GGCATTGGCACCCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTGTCGATCCA-TACT
456 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* ** * *
4855678 TACGCATCCTTTCTCTCTGGTCGACGTAGTGCCCGCCCGCC-CATTCATTTCGTCGGTTGGCTTA
521 TGCGCATCCCGTCTCTCTGGCCGACGTA--GCCCGCCCGCCTC--TCGTTTCGTCGGTTGGCTTA
* ** **
4855742 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTTGCAGC---A---G-
582 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGT
* * * * * *
4855800 -G---CAGAGGGGAACCCGGTTGATCCCTAGCTTGCG-TATCCCACCCCTTTGGTCGGCTGAACG
647 AGCACCAGAGGGGGACCCGATCGATCCCTAGCTTGCGCT-TCCCACCCCTCTGGCCGGCTGAGCG
* * *
4855860 CCCATACGCTCGTTTCGTGGGTTGAC-T-----TACGCATA-C---GGAGTTCATTCCCAGTGTA
711 CCCATACGCTCATTTCGTGGGTTGACTTAGGCATACGCATAGCATAGGAATTCATTCCCAGTCTA
* *
4855915 AGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGG
776 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGGCAGCACATGCTGG
**
4855980 GCTCGTGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGAAGCATCGTC
840 GCTCG-GCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGG---CA----C----CATCGTC
* * *
4856041 GGAGAACCTGACCGGCGGCATTCGGGTTCCGGTGATCGGAGGGGCCGGGGGGTGTGCGCACATGA
1 GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
* *
4856106 TGTGCTATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAAC
66 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
4856171 TCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
131 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * * *
4856236 AAATGGGGACAGTTTTTTCAAATGGTCACAAAGTCTTGTGCACTTAGAGTTTTTAGCTTAATTTT
196 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
4856301 CCTT-TGCATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
261 -TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
** *
4856365 AAAAAATTTTAAAAAATCTCGAACCTTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTC
325 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* * * *
4856430 ATCTTTCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACCAGGC-TAAAAA
390 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAA
* * * *
4856494 ATGGCATTGGCATGCAGAAATAGGAAGATGTGCCTAAACCCACCTAACACCCTATCGATCCATGG
454 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* *
4856559 CTTGCGCATCCCATCTCTCTGGCCGACGTAGTGATCGCCGGCCCGTCTGCCCGATCGTTTCGTCG
519 CTTGCGCATCCCGTCTCTCTGGCCGACGTA--G--C-CC-GCCCG-C--CTC--TCGTTTCGTCG
* ***
4856624 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAAATAAGGGTTGCGGCAGC
573 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGC
* * * * * *
4856689 AGGATCGGTAGTACATAGAGGGGGACCCGATCGATCCCTAGTTTACGCATCCCGCCCCTCTGGCC
638 AGGATCGGTAGCAC-CAGAGGGGGACCCGATCGATCCCTAGCTTGCGCTTCCCACCCCTCTGGCC
* *** *
4856754 GGCTGAGCACCCGCGCGCTCATTTCCTGGGTTGACTTAGGCATACG----G---A-G--TTCATT
702 GGCTGAGCGCCCATACGCTCATTTCGTGGGTTGACTTAGGCATACGCATAGCATAGGAATTCATT
* * *
4856809 CCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAAC
767 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGGCAGC
4856874 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGCA
831 ACATGCTGGGCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCG-GGCACCAT--------C-
4856939 GCATC
885 G--TC
* * * *
4856944 GGAGAACCTGACTGGCGGCATTGGGGTTCCGGTGATCGGAGGGGCCGGCGGGGGTGTGCGCACAC
1 GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-G-GGGGGTGTGCGCACAT
* * *
4857009 GATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTCAAGA
64 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
4857074 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
129 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
4857139 TGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATA
194 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
4857204 TTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAACTCCTTCC
259 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* *
4857269 GAAAAAA-TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
324 GAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* * *
4857333 CGTCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTATGAATTTGCAAGGCATAAAA
389 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
4857398 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
454 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
4857463 CATTGCGCATCCCGTCTTTCTGGACGACATAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTC
519 C-TTGCGCATCCCGTCTCTCTGGCCGACGTA--GCCCGCCCG-CC-T-------CTCGTTTCGTC
* *
4857528 AGTTGGGTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
572 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
4857568 TGGACCGGAC
Statistics
Matches: 3598, Mismatches: 358, Indels: 397
0.83 0.08 0.09
Matches are distributed among these distances:
823 2 0.00
825 1 0.00
827 1 0.00
828 2 0.00
829 86 0.02
830 2 0.00
831 1 0.00
833 3 0.00
835 1 0.00
836 1 0.00
837 1 0.00
838 1 0.00
839 2 0.00
840 1 0.00
841 67 0.02
842 3 0.00
844 3 0.00
845 136 0.04
846 150 0.04
847 1 0.00
849 4 0.00
850 99 0.03
851 147 0.04
852 1 0.00
853 1 0.00
854 1 0.00
855 1 0.00
858 2 0.00
859 2 0.00
860 1 0.00
863 1 0.00
864 1 0.00
867 59 0.02
868 4 0.00
869 3 0.00
871 1 0.00
873 1 0.00
874 1 0.00
875 76 0.02
876 70 0.02
877 7 0.00
878 41 0.01
881 28 0.01
882 222 0.06
883 29 0.01
884 1 0.00
885 6 0.00
886 158 0.04
887 8 0.00
888 3 0.00
889 8 0.00
890 2 0.00
891 69 0.02
892 21 0.01
893 308 0.09
894 194 0.05
896 2 0.00
897 2 0.00
898 1 0.00
899 2 0.00
900 3 0.00
901 7 0.00
902 3 0.00
903 222 0.06
904 179 0.05
905 377 0.10
906 154 0.04
907 240 0.07
908 76 0.02
909 4 0.00
910 5 0.00
911 2 0.00
912 48 0.01
913 1 0.00
914 1 0.00
915 3 0.00
916 62 0.02
917 2 0.00
918 156 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (887 bp):
GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
AAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
TGCGCATCCCGTCTCTCTGGCCGACGTAGCCCGCCCGCCTCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCA
CCAGAGGGGGACCCGATCGATCCCTAGCTTGCGCTTCCCACCCCTCTGGCCGGCTGAGCGCCCAT
ACGCTCATTTCGTGGGTTGACTTAGGCATACGCATAGCATAGGAATTCATTCCCAGTCTAAGCAT
ACGGAGTTCATTCCCAGTCTAAGATCGGACAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCACCATCGTC
Found at i:4855921 original size:26 final size:26
Alignment explanation
Indices: 4855890--4855942 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4855880 GTTGACTTAC
* *
4855890 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
4855916 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
4855942 G
1 G
4855943 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:4856829 original size:26 final size:26
Alignment explanation
Indices: 4856793--4856845 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4856783 GTTGACTTAG
4856793 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
4856819 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4856845 G
1 G
4856846 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4858438 original size:26 final size:26
Alignment explanation
Indices: 4858402--4858454 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
4858392 GTTGACTTAG
4858402 GCATACAGAGTTCATTCTC-AGTCTAA
1 GCATACAGAGTTCATTC-CAAGTCTAA
*
4858428 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
4858454 G
1 G
4858455 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:4859334 original size:26 final size:26
Alignment explanation
Indices: 4859304--4859356 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4859294 GTTCACTTAG
*
4859304 GCATACGAATTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
4859330 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
4859356 G
1 G
4859357 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:4859513 original size:901 final size:900
Alignment explanation
Indices: 4857539--4867540 Score: 7717
Period size: 901 Copynumber: 11.1 Consensus size: 900
4857529 GTTGGGTTAG
* * * * **
4857539 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACC-AAGGTTGTGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
4857603 CTCGGGCATGTGCTGGTGCCACAATTTTCTTCGTCGGGG------CAC-----CATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACTGGAGCATCGCCGGAGA
*
4857657 ACCTGACCGACGGCACTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * *
4857721 CGATGGGTGCTGGTACTTGACCCTTCTATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
4857786 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
4857851 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
4857916 TGCATGACAACAGAAATACAAGGATCACG-CTACCAAGTTTGGGGCCAAAAATCCTTTCC-AAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAAA
* * * *
4857979 AATTTTAAAAAATCCCGAACCGTAAAAA-TTTCAAAAATCTTGAAAAATAGAAAACGATTCG-CA
454 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC-
4858042 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
4858107 CATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCAATGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
4858172 CGCATCCCGTCTCTCTGGTCGGCGTACTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTA
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCG--CGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * * * * * *
4858237 GCTTGGGCATACGGACTTAATTCCCAGTCTATGTTTGGATG--AGACTGAAGGTTGTGTTAGAAG
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCGA-GCCAGACTGAGGGTTGCGGTAGCAG
* * ** * * *
4858300 GATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCTG
773 GATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* *
4858365 CTGAGCGCCCGCACGGTCGTTTCGTGGGTTGACTTAGGCATAC-AGAGTTCATTCTCAGTCTAA
838 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAA
* * *
4858428 GCATACGGAGTTCATTCCAAGTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
4858493 CTCGGTCATGAGCTGGTGCCGCATTTTTCTTCGACGGGGCACCATC-GTCGGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACT-GGAGCATCGCCGGAG
* * *
4858557 AACCTGACC-AGTGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGCGTGCGCACATGATGT
130 AACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * * *
4858621 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCTTCAAACCTCGAGAGCTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
4858686 CACCCCCTTAAAGAGCATTTGAGATGTTATAGGTTTGCTACCAGTTGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
** * *
4858751 TGGGGACACTTACTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGTTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
4858816 ATGCATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
4858881 AATTTTAAAAAAATCTTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGT-GTC
454 AATTTT-AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
4858945 TTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
4859010 CATTGGCACACAGAAATATGAAGATATACCTAAACCCACCTACCACCTTATCGATCCACGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
4859075 CGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCTCGCTGGCCTGCCCGCTCATTTCGTCGGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-CGC--GCCCGCCCGCTCGTTTCGTCGGTTG
* *
4859140 GCTTAGGCATACGGAGTTCATTCCTAGTCTAACATCGAGCCAGACTGAGGGTTGCGGTAGCAGGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAGCCAGACTGAGGGTTGCGGTAGCAGGA
* * *
4859205 TCGGTAGCATGCAGAGGGGGA-CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGTT
775 TCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
4859269 GAGTGCCCGCACGCTCATTTCGTGGGTTCACTTAGGCATACGAATTTCATTCCCAGTCTAA
840 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* ** * * * *
4859330 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTACAGTAGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** *
4859395 CTCGGGCATGTGCTGTTGCCAAATTTTTCTTCACCGGGGCACCATCACTGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACTGGAGCATCGCCGGAGA
* * *
4859460 ACCTGACCGGCGGCATTGGGGTTCCGGCG-TCGGGGGGGCCGGGGGGTGTGCGCACAAGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
4859524 GATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCAAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
4859589 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
4859654 GGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTT-
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTG
* * * *
4859718 TGCATGCCAAAAAAAATATAAGCATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
4859783 ATTTAAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTT
455 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
4859848 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAACCCTTAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
4859913 TTGGCATGCAGAAATATGAAGACGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * **
4859977 CAACCCGTCTCTCTGGCCGACGTAGT----GCC-CGCCCGCCCGCTCGTTTCGTTAGTTGGCTTA
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * *
4860037 GGCTTACAGAGTTCATTCCAAGTCTAAGATC-AGACCAGACCGAGGGTTGAGGAAGCAGGATCGA
715 GGCATACGGAGTTCATTCCCAGTCTAAGATCGAG-CCAGACTGAGGGTTGCGGTAGCAGGATCGG
* * * * * ** * *
4860101 CAGCATGTAAAGGGGGACCCGATCGATCCCCGACTTGCGCATTTCGCCCCTCTGGCCGACTGAGT
779 TAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
4860166 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
844 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * *
4860223 GCATATC-GAGTTCATTCCTATTCTAAGATCGGACCAGACCGATGGTTGCGGCAGCACATGCTGG
1 GCATA-CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
*
4860287 GCTCGGGCATGTGCTGGTGCC-CATTTTTC-T-------------TCACTGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACTGGAGCATCGCCGGAG
* *
4860337 AACCTGACCGACGGCATTGGGGATCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
4860402 CGATGGGTGCTGGTACTTGGTCCTTATATTTGCCCCCTATTCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
4860467 ACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
4860532 GGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * **
4860597 TGCATGCCAACAAAAATACAGGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * *
4860662 ATTTTAAAAAATCTTGAACGGCAAAAAGTTTCGAACATCGTGAAAAATAGAAAACGGGTCATCTT
455 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
4860727 GCCATGAAACTTCACGTGATGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * **
4860792 TTGGTAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTGTCGATCCATAGCTTGCG
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
4860857 CATCCCGTCTCTTTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCACCCGCTTGTTTCATCGGT
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCG--CGCCCG----CCCGCTCGTTTCGTCGGT
* * ** ** * *
4860922 TGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGA--CAGGTTGAGATTTCACAGGTTTG
708 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAGCCAGACTGAGGGTT-GC-GG-TAG
* * * * * * * ****
4860985 C-TG-CCAGTAGCCATTAAAGTGTCTGAAGTGGGGACACTTTTTACAAAT-GGTCACAAAATCTT
770 CAGGATCGGTAG-C-----A-CG-CAG-AG-GGGGAC-C------C-GATCGATC-C-CCGGCTT
* * ** **** ****** * * * *** ** ***
4861047 GTACACTTCAAGTTTTTAGCTGATTTTTTTTGTGCATGCCGAGAAAAATACAAGGATCACGTCTA
815 G--CGCATCCCGCCCCT--CTG--GCCGGCTGAGC--GCC-CGCACGCT-C---G-TTTCGTGGG
*** * * *** * ** * * *** *
4861112 CCAAGTTTGG-GGCCAAAACTCCTTCCGAAAATAT
866 TTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
*** ** * * * * * ** *
4861146 TTTTA-AAAATCCCGA-ACCGCAAAATGTTTAAAAAATCGTGAAAAATAGAAAACGA--GTTGTC
1 GCATACGGAGT-TC-ATTCC-C---A-GTCT--AAGATCG-G---ACCAG--ACCGAGGGTTG-C
* * * * * * * * * * *
4861207 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT-TGTATGAATTTACAAGCCATAAAAATG
50 --GGCA-G-CACAT-GC-TG--GGCT--CGGG--CATGTG-CTG---GTGC-CG-CAT----TTT
* ** * * * * * * * *** *
4861271 GCATT-GCACGTAG-A-AAT-A-TGAAG-ATGTGCC-TA-AACC-CACCTAC--CACCTATCGAT
93 TC-TTCGC-CGGGGCACCATCACTGGAGCAT-CGCCGGAGAACCTGACCGACGGCA-TTGGGGTT
* * *** * **** * * ***
4861325 CC-ACGA-CTTGCGCATCCTGTCTCTCTG-GC-CGACG-TAGTGCCCGCCCGGT--TGG--CTTA
154 CCGACGATC-GGGGGGGCCGGGGGGTGTGCGCAC-ATGAT-GTG--CGATGGGTGCTGGTACTT-
* **** * * ** ** *** ***
4861381 GG--C--ATA-CGGAGTTC-ATTCC-CAGTCTAAGATC--GAAC-CGGACCGAGGGTTGCGGCAG
213 GGCCCTTATATTGGCCCCCTATCCCTCA-TCAAACCTCGAGAACTCACACC--CCCTTAAAG-AG
** * ** ** * * ** * **** ** *
4861436 CACATGCTGGCTCGAGCA--TGTGCTG---GT-GCCA-C-ATTTTTCTTTGCTGGGG-CACCATC
274 CATTTG-AGATTTTA-CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * ** * ** * ******
4861492 GTCGGAGCATCGTCGGAGAATC-TG-AC-CGGCG-GCATTTGGGTTCCGGC-GACCGAGGGGGCC
337 TTC--A-AATGGTCACAAAATCTTGTACACTTCGAG--TTT---TT--AGCTGA---A-TTTTTT
* * * * ** * * * * * **
4861552 GGGGGATGTGCGC-ACATGATGTGCGATGGGTGCTA-GT-TATTGGCCCTTA-TATT-GGCCCCC
388 TGTGCA--TGC-CAACA-AAAATAC-AAGGAT-C-ACGTCTA-----CC-AAGT-TTGGGGCCAA
* * ** ** ** * * * * * *
4861612 TA-TCCCT-C-ATCAAACCTCGAGAACTCAC-ACCCCCTTAAAGAGCATTT-AAGATTTTACAGT
439 AACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGC--AAAAAG--TTTCAA-A----A-A--
* ** * * ** * *** * *
4861672 TTGCTG-CCAGTAGCCATTAA--AGT-GTC-TGAAATGGGGACACTT-TTTTCAAATGG-TCACA
492 TCG-TGAAAAATAG--A-AAACGAGTCGTCTTGCCAT---GAAACTTCACGT-GAA-GGCTTA-A
** * * ** * ***** * * * *
4861730 -AAATC-TTGTACACGTCGAGTTT-TTAGCTGAATTTTTTTGTGCA-TGCCA-ACAAAAATA-CA
547 GGGACCATTGT--A--T-GAATTTACAAGC--CATAAAAATG-GCATTGGCACGCAGAAATATGA
** * * *** ** * * * **** **** ** **
4861789 AGGATCACGTCTACCAAGTTCGGGCTAAAACTCTTTCCGAT-AAAATTTTAAAAAATCTTGAATC
604 A-GAT-GTGCCTA--AA--CCCACCTACCACCCTAT-CGATCCACGGCTT-GCGCATCCCGTCTC
* ***** ** ****** ******** **** ** * * * ** *
4861853 -GTAAAAAGTTTCAAAAATTGTAAAAAATAG--AAAACGAGTCATC--TTGCCATGAAACTTCAC
661 TCTGGCCGGCGT-AGTGCCCG-CCGCGCCCGCCCGCTCGTTTCGTCGGTTGGC-TTAGGCAT-AC
* *** * * * * * *** * * *
4861913 GTGAAGGCTTTAGGGACCATTGTAGGAATTTACAAGCCATAAAAATGGCATTG-GCG-CGCAGAA
722 G-G-A-G-TTCA-TTCCCAGTCTAAG-A--T-CGAGCCAGACTGA-GG-GTTGCG-GTAGCAG-G
** * * ** ***** * * *
4861976 ATATGAAG-ATGTGCTTAAACCCACCTACCA-CCA-CCCTATCGATCCACGGCTTGCGCATCCCG
774 ATCGGTAGCA--CGCAGAGGGGGACC--CGATCGATCCC---CG---G----CTTGCGCATCCCG
* * ** * * ** *
4862038 TCTCTCTGGGTGG-TGTAGTGCCCGCCCACCCGCCCGGCCGCTTGTTTCGTCTGTTGGCTTAGGC
825 CCCCTCTGGCCGGCTG-A--G--CG----CCCG--C--ACGCTCGTTTCGTGGGTTGACTTAGGC
*
4862102 ATAC-AGAGTTCATTCCCATTCTAA
877 ATACGA-AGTTCATTCCCAGTCTAA
* * *
4862126 GCATACGGAGTTCATTCCTAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * *
4862191 CTCGAACATGTGCTGGTGCCGTATTTTTCTTTGCCGGGGCACCATCA-TCGGAGCATCACCAGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACT-GGAGCATCGCCGGAG
* ** * * * * *
4862255 AACCTGACCGACGGCATTGGGGTTCTGGTGATAGAGGGGTCGGGGGGGTGTGCGCACATGATGTA
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
4862320 CGATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGGGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
4862385 ACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
4862450 AGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACGTCGAGTTTTTAGCTAAATGTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
4862515 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCTAAAACTCTTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * ** *
4862580 ATTTTAAAAAATCTCGAACCGTAAAAATTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTT
455 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * * *
4862645 GCCATGAAACGTCACGTGACGGCTTTAGGGACCATTGTAGGAATTCACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
4862710 TTGGAACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCACCTTCTCGATCAACGGCTT
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-C-CC-TATCGATCCACGGCTT
* *
4862775 GCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCTCGCCCGCCCGCCCGCTCGTTTCATCGGTT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-CG--CGCCCGCCCGCTCGTTTCGTCGGTT
* * *** *
4862840 GGCTTAGGCATACGGAGTTCATTACCAGTCTAAGATTG-GATTGGA-TCGAGGGTTGCGGTAGTA
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAG-CCAGACT-GAGGGTTGCGGTAGCA
* * * *
4862903 GGATCGGCAGCATGCAGAGGGGGACCCGA-CTGATCACCGGCTTGCGCTTCCCGCCCCTCTGGCC
772 GGATCGGTAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* *
4862967 GGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * * *
4863032 GCATGCGGAGTTCATTCCCAGTCTAAGATCGGATCGGACAGAGGGTTGTGGCAGCACATGCTGCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * * * * * * * *
4863097 TTCAGGCATGTGCTAGTATCGCATTTCTCTTTGTCAGGGCACCATCGCCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACTGGAGCATCGCCGGAGA
* * * * *
4863162 ACCTAACAGGCGACATTGGGGTTCCGACAATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* *
4863226 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCATACCTCGAAAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
4863291 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGCGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
4863356 GGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTTA-CTAAATTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAA-TTTTTT
* * * * *
4863420 TTTGAATGCCAACAAAAATACAAGGATCATGACTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * ** * *
4863485 AAATTATAAAAAATCCCAAACCGTAAAAAGTTTTGAAAGTCGT-AAGAAAAAGAAAACGAGTCGT
453 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAA-AAATAGAAAACGAGTCGT
* * * *
4863549 CTTGCCATAAAACTTCAAGTGAAGGCTTAAGGGGCCGTTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*** *
4863614 GCATTGGTGTGTAGAAATATGAA-ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
4863678 CCACATCCCGTCTCTTTGGCCGGCGTAGT----GCC-CACCCGCCCGTTCGTTTCATCGGTTGGC
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * ** * *
4863738 TTAGACATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGGA-TCGAGGGTTGCGACAGTATGA
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAG-CCAGACT-GAGGGTTGCGGTAGCAGGA
* * * * * * * *
4863801 TCGTTAGCACGGAGAGGGGGTCTCGACCGATCCTCGGCTTACGCATCCCGCCCCTCTAGCCGGCT
775 TCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
4863866 GAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * *
4863927 GCATACGGAGTTCATTCTCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * ** *
4863992 ATCGGGCATGTGCTAGTGACGCATTTTTCTTCGTCAGGGCACGATC-GTCGGAGCATCATCAGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACT-GGAGCATCGCCGGAG
* **
4864056 AACCTGACTGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
4864121 CAATGGGTGCTGGTACTTGGCCCTTCTATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
4864185 ACCCCCTTAAAGAGCATTTGAGATTTTAGACGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* ** *
4864250 GGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTTAAGTTTTTAGTTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
4864315 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAGGTTTGGCGCCAAAACGCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
4864380 ATTTTAAAAAATCTCAAACTGCAAAAAGGTTCAAAAATCGTGAAAAATAGAGAACGAGTCGTCTT
455 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * * * * *
4864445 ACCATGCAACTTCACGTAAAGGGTTTAGGG-CCATTGTATGAATTTACAAGTCATAAAAATGTCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
4864509 TTGGCACGTAGGAATATGAGGATGTGCCTAAACCCACCTAACACCCTATCGATCCAAGGCTTGCG
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** * *
4864574 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC-CGCCCGGCCATTCATTTCGTCGGTTGGCGTA
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* *** ** * *
4864638 GGCATAC-GACATTCATTCCCAGTCTAAGATCG-GATTGACCCAAGGGTTGCAGTAGCAGGATCA
715 GGCATACGGA-GTTCATTCCCAGTCTAAGATCGAGCCAGA-CTGAGGGTTGCGGTAGCAGGATCG
* * * *
4864701 GCAGCACGCAGA--GGG----G---GA--CCCGGCTTGCGCATCCCGCCCCTCTAGCTGGCTAAG
778 GTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
*
4864755 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
843 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * *
4864813 CCATACAGAGTTCATTCCCAGTCTATGATCGAACCAGACCGAGGGTTGCGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
4864878 CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGCCGGGGCACCAT--C----G--T---CGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACTGGAGCATCGCCGGAGA
* *
4864932 ACCTGATCGACGACATTGGGGTTCCGACGATCGGGGGGGGCC-GGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
4864996 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
4865061 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * * *
4865126 GGGGGCACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCAAATTTGTAGCTGAATTGTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
4865191 TGCATGCCAACAAAAATGCAAGGATCACGTCTACAAAGTTTGGGGACAAAACTCCTTCCGTAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
4865256 ATTTT-AAAAATCTCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
**
4865320 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
4865385 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCGCGGCTTGTG
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
4865450 CATCCCGTCTCTTTGGCCGGCGTAGT---------GCCCGCCCGCTCGTTTCGTGGGTTGGCTTA
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
** * * * * * *
4865506 GGCATACGGAGTTCATTCCCAGTCTAAGATC-AGGCTGGA-TCGAGGGATCCAGCAGCAAGATTG
715 GGCATACGGAGTTCATTCCCAGTCTAAGATCGA-GCCAGACT-GAGGGTTGCGGTAGCAGGATCG
** * *
4865569 GTAGCACAAAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
778 GTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * ** *
4865634 CGCCCGCACGCTCATTTCATGGGTTGA-TGTAGGCATACGGGGTTCATTCCCAGTGTAA
843 CGCCCGCACGCTCGTTTCGTGGGTTGACT-TAGGCATACGAAGTTCATTCCCAGTCTAA
* * * ** * * *
4865692 GCATATGGAGTTCATTCCCAGTGTAAGATGGGACTGGATCGAGGGTCGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
4865757 CTCGGGCATATGCTGGTGCCGCATTTTTCTTCTCCCGGGGCACCATCGAC-GGAGCATCACCGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GCCGGGGCACCATC-ACTGGAGCATCGCCGGA
* * * *
4865821 GAACCTGA-CGACCGGCATTGGGGTT-CGACGATTGGGGGAGCCAGGGGGTGTGCGCAC-TGTTG
129 GAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
*
4865883 TGCGATGGGTGCTGGTACTTGGCCCATATAATTGGCCCCCCTATCCCCTCATCAAACCTCGAGAA
193 TGCGATGGGTGCTGGTACTTGGCCCTTAT-ATTGG-CCCCCTAT-CCCTCATCAAACCTCGAGAA
4865948 CTCACA-CCCCTTAAAGAGCATTTGAGA-TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
255 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * * *
4866011 AAAATGGGGGCACTTTTTTCAAATGGTCACAAAATGTTGTACAGTTCGAGTTTTTAAGCTTAAAT
320 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-AGC-TGAAT
* ***
4866076 TTTTTT-TACCATGCCAACAAAAATTACAAGGATCACGTCTACCAAGTTTGATACCAAAACTCCT
383 TTTTTTGT-GCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* *
4866140 TCCG-AAAAATTTT-AAAAATCTCGAACCG-TAAAAGTTTCAAAAATCCTGAAAAATAGAAAACG
446 TCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
4866202 AGTCGTCTTGCCATGAAACTTCACGTGAAGGC-TAAGGGACCATTGTATGAAGTTTACAAGCCAT
511 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA-TTTACAAGCCAT
* * * * *
4866266 AAAAATTGCATTGCCA-TCAAAAATAAGAAGATGTGCCTAAA-CCACC-ACCACCCTATTCGATC
575 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA-TCGATC
* * * * *
4866328 CACCGGCTTGCACAT-CCATCTCTTTGGCCGACGTAGTGCCCACC-CGCCCCTGCCGCGCTTCGT
639 CA-CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCG-CCC-GCC-CGC-TCGT
* * * * * * *
4866391 TTCAATTCGGTCTAGCTCAGGCATACGGAGTT-ATTCCTAGTCTAAGATCG-GATCAAACAGAGG
699 TTC--GTCGGT-TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAG-CCAGACTGAGG
* * * * * *
4866454 GTTGCGGTAGTAGGA-CTGTATGCACGCAAAGGGGGACCCCAGTCCGAT-CCCTGCTTGTGCATC
760 GTTGCGGTAGCAGGATCGGTA-GCACGCAGAGGGGGACCCGA-T-CGATCCCCGGCTTGCGCATC
* **
4866517 CCGCCCCTCTTGGCCGACTGAGCGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATTAC-AGA
822 CCGCCCCTC-TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA-TACGA-A
4866581 GTTCATTTCCCAGTCTAA
884 GTTCA-TTCCCAGTCTAA
* * *
4866599 GCATACAGAGTTCATTCCCAATCCTAAGATTGGACCAGACCGA-GGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGT-CTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
4866663 GCTCGAGC-TGGTGCTGGTGCCCGCATTTTTCTT--TC---G-----T--C-GGAGCATCGTCGG
65 GCTCGGGCAT-GTGCTGGTG-CCGCATTTTTCTTCGCCGGGGCACCATCACTGGAGCATCGCCGG
* * *
4866714 AGAACCTGACCGACGCCATTGGGGTTCCGACAATC-GGGGGGCCGGGGGTGTGTGTGCACATGAT
128 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG-GTGTGCGCACATGAT
* * * * *
4866778 GTGCGATGGGTGCTGGTACTTGGCCATTAATACTGGCCCACTATCCCTCATCAAACCTGGAGAAG
192 GTGCGATGGGTGCTGGTACTTGGCCCTT-ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
4866843 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAATAAGCCATTAAAGTGTTT
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT-AGCCATTAAAGTG-TC
* * * * * *
4866908 TGAAATGGGGACAACCTTTTTCAAATGGTCACTAAATCATGTACAGTTTGAGGTTTTAGCTGAAT
319 TGAAATGGGGAC-ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * **
4866973 TTTTTTGTGCATG-CAACAAAAATGCAAGGATCATGTCTACCAAGTTTGATGCCAAAACTCCTTC
383 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * ** * *
4867037 CAAAAAAATGTTAAAAAATCTCGAACTTCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAC
448 CGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* *
4867102 TCGTCTTGCCATGAAACTTCACGTGAATGCTTAAGGGGACCATTGTATGAATTTACAAGGCATAA
513 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGGACCATTGTATGAATTTACAAGCCATAA
* * * *
4867167 AAATTGCATTGGCATGTAGAAATATGAAGATGTG-CTGAAACCCACCAACCACCCTATCGATCCA
577 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCA
* * * * *
4867231 CGACTTGCGCATCCTGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCAGCCCGTCCGCTCGTTTCG
641 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCG-C-GCCCGCCCGCTCGTTTCG
* * *
4867296 CCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTC-----T------A-A--GA----T-C-G-
703 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAGCCAGACTGAGGGTTGCGGT
*
4867340 -GCA-G--C---A-CA--CAGAGGGGGACCCGATTGATCCCCGGCTTGCGCATCCCGCCCCTCTG
768 AGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * ** * *
4867395 GCCGACTGAGCGCCCGTACGC-CTGTTTTATGGGTTGACTTAGTCATACGGAGTTCATTCCCAGT
833 GCCGGCTGAGCGCCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGT
4867459 CTAA
897 CTAA
* * * * *
4867463 ACATACGGAGTTTATTCCCAGTCTACA-ATCGGATCAGACCGAGGGATGCGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTA-AGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
4867527 GCTCGGGCATGTGC
65 GCTCGGGCATGTGC
4867541 NNNNNNNNNN
Statistics
Matches: 7232, Mismatches: 1398, Indels: 991
0.75 0.15 0.10
Matches are distributed among these distances:
863 16 0.00
864 61 0.01
865 11 0.00
866 46 0.01
867 23 0.00
868 88 0.01
869 6 0.00
870 5 0.00
872 1 0.00
874 1 0.00
875 163 0.02
876 329 0.05
877 4 0.00
878 54 0.01
879 578 0.08
880 66 0.01
881 1 0.00
883 1 0.00
884 1 0.00
885 4 0.00
886 181 0.03
887 1 0.00
888 19 0.00
889 108 0.01
890 229 0.03
891 150 0.02
892 270 0.04
893 418 0.06
894 207 0.03
895 473 0.07
896 84 0.01
897 124 0.02
898 99 0.01
899 86 0.01
900 155 0.02
901 685 0.09
902 295 0.04
903 350 0.05
904 73 0.01
905 54 0.01
906 394 0.05
907 261 0.04
908 33 0.00
909 3 0.00
910 7 0.00
912 5 0.00
914 5 0.00
916 4 0.00
918 25 0.00
919 5 0.00
920 1 0.00
922 2 0.00
923 17 0.00
924 10 0.00
925 2 0.00
926 3 0.00
927 2 0.00
928 11 0.00
929 9 0.00
930 14 0.00
931 3 0.00
932 1 0.00
934 13 0.00
935 10 0.00
936 22 0.00
937 16 0.00
938 14 0.00
939 18 0.00
940 16 0.00
941 6 0.00
942 10 0.00
943 14 0.00
944 10 0.00
945 11 0.00
946 11 0.00
947 12 0.00
948 11 0.00
949 17 0.00
950 10 0.00
951 22 0.00
952 24 0.00
953 20 0.00
954 20 0.00
955 46 0.01
956 26 0.00
957 22 0.00
958 8 0.00
959 15 0.00
960 11 0.00
961 19 0.00
962 26 0.00
963 46 0.01
964 26 0.00
965 16 0.00
966 27 0.00
967 24 0.00
968 10 0.00
969 22 0.00
970 11 0.00
971 2 0.00
972 5 0.00
973 15 0.00
974 12 0.00
975 22 0.00
976 11 0.00
977 13 0.00
978 7 0.00
979 38 0.01
980 32 0.00
981 15 0.00
982 12 0.00
983 5 0.00
984 16 0.00
985 13 0.00
986 4 0.00
987 1 0.00
988 4 0.00
989 4 0.00
990 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACTGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCGAGCCAGACTGAGGGTTGCGGTAGCAGGATCGGTA
GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:4862136 original size:26 final size:26
Alignment explanation
Indices: 4862100--4862152 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4862090 GTTGGCTTAG
*
4862100 GCATACAGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
4862126 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4862152 G
1 G
4862153 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:4863042 original size:26 final size:26
Alignment explanation
Indices: 4863006--4863058 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4862996 GTTGACTTAG
4863006 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
4863032 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4863058 G
1 G
4863059 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4863937 original size:26 final size:26
Alignment explanation
Indices: 4863901--4863953 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4863891 GTTGACTTAG
4863901 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
4863927 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4863953 G
1 G
4863954 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4864046 original size:895 final size:892
Alignment explanation
Indices: 4862090--4867540 Score: 6337
Period size: 895 Copynumber: 6.1 Consensus size: 892
4862080 TGTTTCGTCT
* * * *
4862090 GTTGGCTTAGGCATACAGAGTTCATTCCCATTCTAAGCATACGGAGTTCATTCCTAGTCTAAGAT
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * ** *
4862155 CGAACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGAACATGTGCTGGTGCCGTATTTTTC
66 CGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * * * **
4862220 TTTGCCGGGGCACCATCATCGGAGCATCACCAGAGAACCTGACCGACGGCATTGGGGTTCTGGTG
131 TTCGTCGGGGCACCATCGTCGGAGCATCATCAGAGAACCTGA-CGACGGCATTGGGGTTCCGACG
* * * *
4862285 ATAGAGGGGTCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATT
195 ATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
4862350 GGACCCCTATCCCTCATCAAACCTCGGGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACA
260 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * *
4862415 GGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAAT
325 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
4862480 CTTGTACACGTCGAGTTTTTAGCTAAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
390 CTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * *
4862545 CTACCAAGTTTAGGGCTAAAACTCTTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAATTT
455 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTAAAAAATCTCGAACCGTAAAAAGTT
* * * * *
4862610 TTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACGTCACGTGACGGCTTTAGGG
519 TTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * * *
4862675 ACCATTGTAGGAATTCACAAGCCATAAAAATGGCATTGGAACGCAGAAATATGAAGATGTGCCTA
584 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * *
4862740 AACCCACCTACCACCACCTTCTCGATCAACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTG
649 AACCCACCTACCA-C-CC-TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA---
* * *
4862805 CCCGCTCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTACCAGTC
708 ---G-T-GCCCACCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * *
4862870 TAAGATTGGATTGGATCGAGGGTTGCGGTAGTAGGATCGGCAGCATGCAGAGGGGGACCCGACTG
768 TAAGATCGGACTGGATCGAGGGTTGCGATAGTAGGATCGGTAGCACGCAGAGGGGGACCCGACCG
* * *
4862935 ATCACCGGCTTGCGCTTCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGG
833 ATC-CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGG
*
4862996 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGAT
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * * * ** *
4863061 CGGATCGGACAGAGGGTTGTGGCAGCACATGCTGCGTTCAGGCATGTGCTAGTATCGCATTTCTC
66 CGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * * * * * *
4863126 TTTGTCAGGGCACCATCGCCGGAGCATCGTCAGAGAACCTAACAGGCGACATTGGGGTTCCGACA
131 TTCGTCGGGGCACCATCGTCGGAGCATCATCAGAGAACCTGAC-GACGGCATTGGGGTTCCGACG
4863191 ATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
195 ATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
4863256 GGCCCCCTATCCCTCATCATACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATA
260 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * *
4863321 GGTTTGCTGCCAATAGCCATTAAAGCGTCTAAAATGGGGACACTTTTTTCAAATGATCACAAAAT
325 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
4863386 CTTGTACACTTCGAGTTTTTTA-CTAAATTTTTTTTTTGAATGCCAACAAAAATACAAGGATCAT
390 CTTGTACACTTCGAG-TTTTTAGCTAAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * *
4863450 GACTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTATAAAAAATCCCAAACCGTAAAAAG
453 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT-TAAAAAATCTCGAACCGTAAAAAG
* * * * *
4863515 TTTTGAAAGTCGT-AAGAAAAAGAAAACGAGTCGTCTTGCCATAAAACTTCAAGTGAAGGCTTAA
517 TTTTAAAAATCGTGAA-AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * ** *
4863579 GGGGCCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGTGTGTAGAAATATGAA-ATGTGC
581 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
* * *
4863643 CTAAACCCACCTACCACCCTATCGATCCACGGCTTCCACATCCCGTCTCTTTGGCCGGCGTAGTG
646 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* *
4863708 CCCACCCGCCCGTTCGTTTCATCGGTTGGCTTAGACATACGGAGTTCATTCCCAGTCTAAGATCA
711 CCCACCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * * *
4863773 GACCGGATCGAGGGTTGCGACAGTATGATCGTTAGCACGGAGAGGGGGTCTCGACCGATCCTCGG
776 GACTGGATCGAGGGTTGCGATAGTAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCC-CGG
* * * * *
4863838 CTTACGCATCCCGCCCCTCTAGCCGGCTGAGTGCCCGCACGCTCATTTCGTGG
840 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGG
*
4863891 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGAT
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * *
4863956 CGGATCAGACCGAGGGTTGTGGTAGCACATGCTGGGATCGGGCATGTGCTAGTGACGCATTTTTC
66 CGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * **
4864021 TTCGTCAGGGCACGATCGTCGGAGCATCATCAGAGAACCTGACTGGTGGCATTGGGGTTCCGACG
131 TTCGTCGGGGCACCATCGTCGGAGCATCATCAGAGAACCTGAC-GACGGCATTGGGGTTCCGACG
* *
4864086 ATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTCTAT
195 ATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
4864150 TGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAG
259 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * * *
4864214 ACGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAA
324 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAA
** * * *
4864279 TCTTGTACACTTTAAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATG
389 TCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * * * * * *
4864344 TCTACCAGGTTTGGCGCCAAAACGCCTTCCGAAAAAATTTTAAAAAATCTCAAACTGCAAAAAGG
454 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTAAAAAATCTCGAACCGTAAAAAGT
* * * * * * *
4864409 TTCAAAAATCGTGAAAAATAGAGAACGAGTCGTCTTACCATGCAACTTCACGTAAAGGGTTTAGG
518 TTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * * * * *
4864474 G-CCATTGTATGAATTTACAAGTCATAAAAATGTCATTGGCACGTAGGAATATGAGGATGTGCCT
583 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* *
4864538 AAACCCACCTAACACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
648 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* * * * *
4864603 CGCCCGCCCGGCCATTCATTTCGTCGGTTGGCGTAGGCATAC-GACATTCATTCCCAGTCTAAGA
713 CACCCGCCC-G---TTCGTTTCATCGGTTGGCTTAGGCATACGGA-GTTCATTCCCAGTCTAAGA
* * * * * *
4864667 TCGGA-TTGACCCAAGGGTTGC-AGTAGCAGGATCAGCAGCACGCAGA--GGG----G---GA-C
773 TCGGACTGGA-TCGAGGGTTGCGA-TAGTAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATC
* * *
4864720 CCGGCTTGCGCATCCCGCCCCTCTAGCTGGCTAAGCGCCCGCACGCTCGTTTCATGG
836 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGG
* * * *
4864777 GTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAACCATACAGAGTTCATTCCCAGTCTATGAT
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * *
4864842 CGAACCAGACCGAGGGTTGCGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTC
66 CGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* *
4864907 TTCGCCGGGGCACCATCGTC---G--------GAGAACCTGATCGACGACATTGGGGTTCCGACG
131 TTCGTCGGGGCACCATCGTCGGAGCATCATCAGAGAACCTGA-CGACGGCATTGGGGTTCCGACG
4864961 ATCGGGGGG--GGCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
195 ATCGGGGGGCCGG--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
4865024 TTGGCCCCCTATCCTTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTA
258 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
4865089 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGGCACTTTTTTCAAATGGTCAGAAA
323 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * * *
4865154 ATCTTGTACACTTCAAATTTGTAGCTGAATTGTTTTGTGCATGCCAACAAAAATGCAAGGATCAC
388 ATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * * *
4865219 GTCTACAAAGTTTGGGGACAAAACTCCTTCCGTAAAAATTTTAAAAATCTCGAACCGCAAAAAGT
453 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAATCTCGAACCGTAAAAAGT
*
4865284 TTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
518 TTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
** *
4865349 GACCATTGTATGAATTTACAAGAAATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCT
583 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* * * *
4865414 AAACCCACCTACCACCCTATCGATTCGCGGCTTGTGCATCCCGTCTCTTTGGCCGGCGTAGTG--
648 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* * *
4865477 --CCCGCCCGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGG
713 CACCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GG
* * * * * * ** *
4865540 -CTGGATCGAGGGAT-CCAGCAGCAAGATTGGTAGCACAAAGAGGGGGACCCGACCGATCCCCGA
777 ACTGGATCGAGGGTTGCGA-TAGTAGGATCGGTAGCACGCAGAGGGGGACCCGACCGAT-CCCGG
*
4865603 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGG
840 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGG
* * * *
4865656 GTTGA-TGTAGGCATACGGGGTTCATTCCCAGTGTAAGCATATGGAGTTCATTCCCAGTGTAAGA
1 GTTGACT-TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* ** * * * *
4865720 TGGGACTGGATCGAGGGTCGCGACAGCACATGCTGGGCTCGGGCATATGCTGGTGCCGCATTTTT
65 TCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * *
4865785 CTTC-TCCCGGGGCACCATCGACGGAGCATCACCGGAGAACCTGACGACCGGCATTGGGGTT-CG
130 CTTCGT--CGGGGCACCATCGTCGGAGCATCATCAGAGAACCTGACGA-CGGCATTGGGGTTCCG
* * * *
4865848 ACGATTGGGGGAGCC-AGGGGGTGTGCGCAC-TGTTGTGCGATGGGTGCTGGTACTTGGCCCATA
192 ACGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
4865911 TAATTGGCCCCCCTATCCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGA
256 T-ATTGG-CCCCCTAT-CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
4865975 -TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGGCACTTTTTTCAAATGGTC
318 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTC
* * *
4866039 ACAAAATGTTGTACAGTTCGAGTTTTTAAGCTTAAATTTTTTT-TACCATGCCAACAAAAATTAC
383 ACAAAATCTTGTACACTTCGAGTTTTT-AGC-TAAATTTTTTTGT-GCATGCCAACAAAAA-TAC
*** *
4866103 AAGGATCACGTCTACCAAGTTTGATACCAAAACTCCTTCCG-AAAAATTTTAAAAATCTCGAACC
444 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAATCTCGAACC
* *
4866167 GT-AAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
509 GTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * * *
4866231 GGC-TAAGGGACCATTGTATGAAGTTTACAAGCCATAAAAATTGCATTGCCAT-CAAAAATAAGA
574 GGCTTAAGGGACCATTGTATGAA-TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* * *
4866294 AGATGTGCCTAAA-CCACC-ACCACCCTATTCGATCCACCGGCTTGCACAT-CCATCTCTTTGGC
638 AGATGTGCCTAAACCCACCTACCACCCTA-TCGATCCA-CGGCTTGCGCATCCCGTCTCTCTGGC
* * *
4866356 CGACGTAGTGCCCACCCGCCCCTGCCGCGCTTCGTTTCAATTCGGTCTAGCTCAGGCATACGGAG
701 CGGCGTAGTGCCCA-----CCC-GCC-CG-TTCGTTTC-A-TCGGT-TGGCTTAGGCATACGGAG
* ** * * * *
4866421 TT-ATTCCTAGTCTAAGATCGGA-TCAAACAGAGGGTTGCGGTAGTAGGA-CTGTATGCACGCAA
755 TTCATTCCCAGTCTAAGATCGGACTGGATC-GAGGGTTGCGATAGTAGGATCGGTA-GCACGCAG
* * * *
4866483 AGGGGGACCCCAGTCCGATCCCTGCTTGTGCATCCCGCCCCTCTTGGCCGACTGAGCGCCCGCAC
818 AGGGGGA-CCC-GACCGATCCCGGCTTGCGCATCCCGCCCCTC-TGGCCGGCTGAGCGCCCGCAC
*
4866548 GCTCGTTTTATGG
880 GCTCGTTTCATGG
* * *
4866561 GTTGACTTAGGCATTACAGAGTTCATTTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCCTAA
1 GTTGACTTAGGCA-TACGGAGTTCA-TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT-CTAA
* *
4866626 GATTGGACCAGACCGA-GGTTGCGGCAGCACATGCTGGGCTCGAGC-TGGTGCTGGTGCCCGCAT
63 GATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT-GTGCTGGTG-CCGCAT
* * *
4866689 TTTTC-T--T----------TCGTCGGAGCATCGTCGGAGAACCTGACCGACGCCATTGGGGTTC
126 TTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCAGAGAACCTGA-CGACGGCATTGGGGTTC
* * * *
4866741 CGACAATCGGGGGGCCGGGGGTGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATT
190 CGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * * *
4866806 AATACTGGCCCACTATCCCTCATCAAACCTGGAGAAGTCACACCCCCTTAAAGAGCATTTGAGAT
255 -ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * * * *
4866871 TTTACAGGTTTGCTGGCAATAAGCCATTAAAGTGTTTTGAAATGGGGACAACCTTTTTCAAATGG
319 TTTACAGGTTTGCTGCCAGT-AGCCATTAAAGTG-TCTAAAATGGGGAC-ACTTTTTTCAAATGG
* * * * * * *
4866936 TCACTAAATCATGTACAGTTTGAGGTTTTAGCTGAATTTTTTTGTGCATG-CAACAAAAATGCAA
381 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAA
* ** * *
4867000 GGATCATGTCTACCAAGTTTGATGCCAAAACTCCTTCCAAAAAAATGTTAAAAAATCTCGAA-CT
446 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT-TTAAAAAATCTCGAACCG
*
4867064 TCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGACTCGTCTTGCCATGAAACTTCACGTGAA
510 T-AAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * * *
4867129 TGCTTAAGGGGACCATTGTATGAATTTACAAGGCATAAAAATTGCATTGGCATGTAGAAATATGA
574 GGCTTAA-GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* * * *
4867194 AGATGTG-CTGAAACCCACCAACCACCCTATCGATCCACGACTTGCGCATCCTGTCTCTCTAGCC
638 AGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * ** * *
4867258 GACGTAGTGCCCGCCCGCCAGCCCGTCCGCTCGTTTCGCCAGTTGGCTTAGGCATACGAAGTTCA
702 GGCGTAGTG-CC-CAC-CC-GCCCGT----TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
4867323 TTCCCAGTCT---A----A---GATC----G--GC------A-G--C---A-CA--CAGAGGGGG
759 TTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGATAGTAGGATCGGTAGCACGCAGAGGGGG
** * *
4867357 ACCCGATTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGTACGC-CTGTT
824 ACCCGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC-GTT
*
4867421 TTATGG
887 TCATGG
* * *
4867427 GTTGACTTAGTCATACGGAGTTCATTCCCAGTCTAAACATACGGAGTTTATTCCCAGTCTACA-A
1 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA-AGA
* * *
4867491 TCGGATCAGACCGAGGGATGCGGCAGCACATGCTAGGCTCGGGCATGTGC
65 TCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
4867541 NNNNNNNNNN
Statistics
Matches: 3939, Mismatches: 476, Indels: 302
0.84 0.10 0.06
Matches are distributed among these distances:
863 16 0.00
864 61 0.02
865 12 0.00
866 47 0.01
867 26 0.01
868 77 0.02
869 7 0.00
870 5 0.00
871 1 0.00
872 8 0.00
873 1 0.00
874 7 0.00
875 165 0.04
876 318 0.08
877 3 0.00
878 1 0.00
879 165 0.04
880 14 0.00
883 4 0.00
885 1 0.00
886 183 0.05
887 2 0.00
888 11 0.00
889 64 0.02
890 173 0.04
891 144 0.04
892 118 0.03
893 259 0.07
894 203 0.05
895 486 0.12
896 83 0.02
897 116 0.03
898 99 0.03
899 91 0.02
900 46 0.01
901 46 0.01
902 19 0.00
903 81 0.02
904 45 0.01
905 50 0.01
906 395 0.10
907 260 0.07
908 26 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
CGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
TTCGTCGGGGCACCATCGTCGGAGCATCATCAGAGAACCTGACGACGGCATTGGGGTTCCGACGA
TCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
GTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
TTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAATCTCGAACCGTAAAAAGTTTT
AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCAC
CCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTG
GATCGAGGGTTGCGATAGTAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCGGCTTGCG
CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGG
Found at i:4865695 original size:26 final size:26
Alignment explanation
Indices: 4865661--4865718 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
4865651 CATGGGTTGA
* *
4865661 TGTAGGCATACGGGGTTCATTCCCAG
1 TGTAAGCATACGGAGTTCATTCCCAG
*
4865687 TGTAAGCATATGGAGTTCATTCCCAG
1 TGTAAGCATACGGAGTTCATTCCCAG
4865713 TGTAAG
1 TGTAAG
4865719 ATGGGACTGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (26 bp):
TGTAAGCATACGGAGTTCATTCCCAG
Found at i:4866625 original size:27 final size:27
Alignment explanation
Indices: 4866575--4866626 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
4866565 ACTTAGGCAT
*
4866575 TACAGAGTTCATTTCCCAGTCTAAGCA
1 TACAGAGTTCATTTCCCAATCTAAGCA
4866602 TACAGAGTTCA-TTCCCAATCCTAAG
1 TACAGAGTTCATTTCCCAAT-CTAAG
4866627 ATTGGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
TACAGAGTTCATTTCCCAATCTAAGCA
Found at i:4867467 original size:26 final size:26
Alignment explanation
Indices: 4867438--4867487 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
4867428 TTGACTTAGT
4867438 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
*
4867464 CATACGGAGTTTATTCCCAGTCTA
1 CATACGGAGTTCATTCCCAGTCTA
4867488 CAATCGGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:4872095 original size:700 final size:701
Alignment explanation
Indices: 4869345--4872167 Score: 3240
Period size: 700 Copynumber: 4.0 Consensus size: 701
4869335 ACTGAGGCTT
* *
4869345 GGCAGCGGCGGG--CTAAGCCGGCCAGA-AGGACAGGAT-GCGCAAGTCGTGGATCGAT--GGTG
1 GGCAGAGGCGGGCACTACGCCGGCCAGAGA-GACAGGATGGCGCAAGTCGTGGATCGATAGGGTG
* * * * *
4869404 -GAGGTG-GTTTAGGCACATCTTCATA-TTCTGCATGCCAATGCCATTTTTGTGGCTTGTAGATT
65 CTAGGTGAGTTTAGG-ACATCTTCATATTTCTACATGCCAATGCCATTTTTATGCCTTGTAAATT
* *
4869466 CATA-AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTC
129 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTGCATGGCAAGACGACTCGTTTTCTATTTTTC
* * *
4869530 ACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCAC
194 ACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGGGTTTTGGCCCC
* * * * *
4869594 AAACATGGTAGACGTGATCCTTGTATTTTTGCTGGCATGCATAAAAAAATTCAGCTAAAAACTCG
259 AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAAATCAGTTAAAAACTCG
4869659 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
323 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * ** *
4869724 GGCAGCAAACCTATAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGC
388 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
* *
4869789 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGTGCACACCCCCCC
453 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC
* * * * * * *
4869854 G-GCCCCCCGATC-ACTGGAACCCCAATGGCGTCGGTCAGGTTCTCCGGCGATGGTGCTCCGACG
517 GACCCCCCCGATCGTC-GAAAACCCAATGCCGTCGGTCAGGTTCTCC-GCGATGGTGCCCCGGCG
* * * *
4869917 AA-AAAAATACGGCA-CATGCACATGCCCGAGCCCATCATGTGCTG-CAGCAACCGTTGGT-TCG
580 AAGAAAAATGCGGCACCA-GCACATG-CCGAGCCCAGCATGTGCTGTC-GCAACCCTCGGTCT-G
* * * * * * * ***
4869978 GTCCCATCTTAGACGGGGAATGAACTTTCAT-TACCCTAAAGCCAACTGAAAGAAACGATGCGGG
641 GTCCGATCTTAGACTGGGAATGAAC-TCCGTAT-GCCT-AAGCCAACCGACA-AAAC-A-GCAAA
4870042 CG
700 CG
* * * * * * * *
4870044 GG-AGGGGCGGGCACTACGTCAGCGAGAGAGTACGCGGGATGCCGCAAAGGCCCCCCGACCGGAC
1 GGCAGAGGCGGGCACTACGCCGGCCAGAGAG-A--CAGGATGGCGC-AA-G----TCG--TGGA-
* * *
4870108 TTTCCCGAATTAGGGGTTGGGGTAAGGGTGGGGAGGTTTTTTTTGGCACATCTCCATA-TTCTAT
54 --T--CG-A-TA-GGG-T--GCT-A-GGT---GA-G----TTTAGG-ACATCTTCATATTTCTA-
* * * *
4870172 C-CGCCAATGCCATTTCTGTGGCTTTGTAAATTCATACAAATGGTCCC-TAAGCCTTCACGTGAA
97 CATGCCAATGCCATTTTTAT-GCCTTGTAAATTCATAC-AATGGTCCCTTAAGCCTTCACGTGAA
* * * * *** ** *
4870235 GTTTTCTTGGCAAGATGACATCATTTTTCTATTTTTCACGATTTCACAAAACTTTTGGCTAGTTC
160 G-TTGCATGGCAAGACGAC-TC-GTTTTCTATTTTTCACGATTT-TTGAAACTTTT-TATGGTTC
* * * *
4870300 GGGATTTTTTAAAACTTTTTCGGAACGGAGTTTTGGGCCCAAATTCTCT-GTAGACATGATCCTC
220 GGGATTTTTTAAAATTTTTTCGGAA-GGGGTTTTGGCCCCAAA--CT-TGGTAGACATGATCCTT
* * * * *
4870364 GCATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGGTTTACAAGAATTTTAGTG
281 GTATTTTTGTTGGCATGCA-AAAAAAAATCAGTTAAAAACTCGAA-GTGTACAAG-ATTTT-GTG
4870429 ACCATTTGAAAAAAGTGTCCCCATTTCAGACAC-TTAATGGCTACTGGCAGGCAAACCTGTAAAA
342 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA-GCAAACCTGTAAAA
* *
4870493 TCTCAAATGCT-TTTAAGGGGGTGGTGAGTTCTCGAGGTTTGAAT-TGGGATAGGGGGCCAATAT
406 TCTCAAATGCTCTTTAAGGGGGT-GTGAGTTCTCAAGGTTTG-ATGAGGGATAGGGGGCCAATAT
* **
4870556 AAGGGCTAAGTACCAGCACCCATTACACATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCG
469 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCG
* * *
4870621 GAAGCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGGTGCCCCGGCGAAGAAAAATCCGGCACCA
534 AAAACCCAATGCCGTCGGTCAGGTTCTCC-GCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCA
* * *
4870686 ACACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAAATTGGGAAT
598 GCACATG-CCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAAT
*
4870751 GAACTCCGTATGCCTAAGCCAACCGACAAAACAAGCGAACG
662 GAACTCCGTATGCCTAAGCCAACCGACAAAAC-AGCAAACG
*
4870792 GGCGAGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGGCGCAAGTCGTGGATCGATAGGGT
1 GGC-AG-AGGCGGGCACTACGCCGGCCAGAGAGACAGGATGGCGCAAGTCGTGGATCGATAGGGT
* * *
4870857 GCTAGGTGGGTTTAGGACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG-GTTGT-AATT
64 GCTAGGTGAGTTTAGGACATCTTCATATTTCTACATGCCAATGCCATTTTTATGCCTTGTAAATT
*
4870920 CATACGATGGTCCCTTAAGCCTTCACGTGAAGTTGCATGGCAAGACGACTCGTTTTCTATTTTTC
129 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTGCATGGCAAGACGACTCGTTTTCTATTTTTC
*
4870985 ACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGGGTTTTGGCCCC
194 ACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGGGTTTTGGCCCC
* * * *
4871050 AAACTTGGTAAACTTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATCAGTTAAAAACTGGA
259 AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATCAGTTAAAAACTCGA
** *
4871115 AGTGTACAAGATTTTGTGAGAATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTG
324 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * *
4871180 GTAGCAAACCTGTAAAATCTCAAATGTTCTTTAAAGGGGTGTGAGTTGTCAAGGTTTGATGAGGG
389 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
*
4871245 ATAGGGGGCCAATATAAGGGCCAAGTACTAAGCACCCATCGCACATCATGTGCGCACAACCCCCC
454 ATAGGGGGCCAATATAAGGGCCAAGTAC-CAGCACCCATCGCACATCATGTGCGCAC-ACCCCCC
* * * * * * * *
4871310 TGGCCCCCCCGAT-GGCTAGAACCCCAATGCCGTCGGTCAAGTTCT-C-TGATGATGCCTCGGCG
517 -GACCCCCCCGATCGTCGA-AAACCCAATGCCGTCGGTCAGGTTCTCCGCGATGGTGCCCCGGCG
* * *
4871372 AAGAAAAATGCGGCACTAGCACATGCTCGAGCCCAGCATGTGCTG-CAGCAACCCTCAGTCTGAT
580 AAGAAAAATGCGGCACCAGCACATGC-CGAGCCCAGCATGTGCTGTC-GCAACCCTCGGTCTGGT
*
4871436 CCGGTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAAC-G-AAACG
643 CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACAGCAAACG
* *
4871493 GGC-G-GGCGGGCACTATGTCGGCCAGAGAGACAGGAT-GCGCAAG-CTGTGGATCGATAGGGTG
1 GGCAGAGGCGGGCACTACGCCGGCCAGAGAGACAGGATGGCGCAAGTC-GTGGATCGATAGGGTG
* * *
4871554 GTAGGTGAGTTTAGGCACATCTTCATATTTTTACGTGCCAATGCCATTTTTATGCCTTGTAAATT
65 CTAGGTGAGTTTAGG-ACATCTTCATATTTCTACATGCCAATGCCATTTTTATGCCTTGTAAATT
4871619 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTGCATGGCAAGACGACTCGTTTTCTATTTTTC
129 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTGCATGGCAAGACGACTCGTTTTCTATTTTTC
* *
4871684 ATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGGGTTTTGGCCCC
194 ACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGGGTTTTGGCCCC
* * * * * *
4871749 AAACTTGGCAGACATGATCGTTGTACTCTTGCTGGCATGCATAAAAAAAATCAATTAAAAACTCG
259 AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAAATCAGTTAAAAACTCG
*
4871814 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATT
323 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
4871879 GGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAGGGGGGTGTGAGTTTTCAAGGTTTGATGAGG
388 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
* * * ** *
4871944 GAAAGGGGGCCAATATAAAGGCCAAGTACCAGCAGCCATCGCACATCATGTAAGCACAGCACCCC
453 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC
*** *
4872009 GACCCCTTTGATCGTCGAAAACCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGACGA
517 GACCCCCCCGATCGTCGAAAACCCAATGCCGTCGGTCAGGTTCTCCG-CGATGGTGCCCCGGCGA
* * *
4872074 A-AAAAATGCAGCACCAGCACATGGCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGGCC
581 AGAAAAATGCGGCACCAGCACAT-GCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCC
*
4872138 GATCTTAGACTGGGAATGAACTTCGTATGC
645 GATCTTAGACTGGGAATGAACTCCGTATGC
4872168 TTAGACTGGG
Statistics
Matches: 1824, Mismatches: 205, Indels: 189
0.82 0.09 0.09
Matches are distributed among these distances:
695 1 0.00
696 36 0.02
697 64 0.04
698 45 0.02
699 200 0.11
700 258 0.14
701 26 0.01
702 1 0.00
703 9 0.00
704 222 0.12
705 57 0.03
706 19 0.01
707 56 0.03
708 32 0.02
710 17 0.01
711 28 0.02
712 11 0.01
713 20 0.01
714 2 0.00
715 23 0.01
716 26 0.01
717 6 0.00
718 13 0.01
719 25 0.01
722 2 0.00
723 2 0.00
724 1 0.00
725 1 0.00
727 4 0.00
728 4 0.00
729 2 0.00
731 2 0.00
732 3 0.00
733 3 0.00
734 1 0.00
735 2 0.00
737 37 0.02
738 14 0.01
739 17 0.01
740 27 0.01
741 1 0.00
742 22 0.01
743 8 0.00
744 23 0.01
745 4 0.00
746 16 0.01
747 2 0.00
748 72 0.04
749 14 0.01
750 53 0.03
751 214 0.12
752 72 0.04
753 4 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (701 bp):
GGCAGAGGCGGGCACTACGCCGGCCAGAGAGACAGGATGGCGCAAGTCGTGGATCGATAGGGTGC
TAGGTGAGTTTAGGACATCTTCATATTTCTACATGCCAATGCCATTTTTATGCCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCACGTGAAGTTGCATGGCAAGACGACTCGTTTTCTATTTTTCAC
GATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGGGTTTTGGCCCCAA
ACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATCAGTTAAAAACTCGAAG
TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACC
CCCCCGATCGTCGAAAACCCAATGCCGTCGGTCAGGTTCTCCGCGATGGTGCCCCGGCGAAGAAA
AATGCGGCACCAGCACATGCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTT
AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACAGCAAACG
Found at i:4872191 original size:25 final size:26
Alignment explanation
Indices: 4872141--4872193 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
4872131 CCGGGCCGAT
4872141 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
4872167 CTTAGACTGGGAATG-ACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
4872192 CT
1 CT
4872194 AAGTCACCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 12 0.44
26 15 0.56
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:4874074 original size:26 final size:26
Alignment explanation
Indices: 4874045--4874097 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4874035 CCGATCCGAT
4874045 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4874071 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4874097 C
1 C
4874098 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4874933 original size:903 final size:897
Alignment explanation
Indices: 4873164--4882862 Score: 11615
Period size: 903 Copynumber: 10.9 Consensus size: 897
4873154 CCGATCCGAT
* *
4873164 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
4873229 CGGCTAGAGGGGCGAGATGCGCAAGCTGGGGATCGGTCGGCTCCCCCTCTGCGTGC-TACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCGT--CGATC
* * * *
4873293 CTACTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTG-GCAATGCACTCCGTATGCCTAAGCC
129 CTACTACCACAACCCTCAGTCTGGTCTGATCTTAGACTGAG-AATGAACTCCGTATGCCTAAGCC
* * * *
4873357 AACCGACGAAACGAACGCGCGAGTGGGCGAGCGGGCGGGCACTATGCCGGCTAGAGAGACGAGAT
193 AACCGACGAAACG-A-GCG-G-GCGGGCG-GC-GGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* * * *
4873422 GCGCAAGCCGTGGATCGATAGGCTAGTAGGTGGGTTTAGGCACATTTTCATATTTCTGCATGCCA
252 GCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
* **
4873487 ATGCCATATTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACAAGAAGTTTCATGG
317 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * ** * ** * *
4873552 CATGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAATTTTTGTGATTCGAGATTCTTTAAAA
382 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAA
*
4873617 TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
447 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * * *
4873682 ACAAAAAAAAAATCAGCTGAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGATAAAAGTGTC
512 AC--AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
4873747 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCGGTAAAATCTCAAATGCTCTTTAA-GG
575 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * * * *
4873811 GGTGTGAGCTCTCAAGGCTTGATGAGGGATAGAGGACCAATATAAGGGCCAAGTACCAGCACCCA
640 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * * *
4873876 TCGCACATCATGGGCGCACAGCCCCCGCCCCCCCGACCGTCGGAACCCCAATGCCGTCC-GTCAA
705 TCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCATCGGAA-CCCAATGCCG-CCGGTCAG
* *
4873940 GTTCTCCGACGATGCTCCGGCGATGGTGCCCCAACGAAG--AAAAATGCAGCACCAGCACATGCC
768 GTTCTCCGGCGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAAAATG--GCACCAGCACATGCC
* * * * ** *
4874003 TGAGCCTAGCATTTGCTACCGCAACCCTATGTCCGATCCGATCTTAGACTGGGAATGAACTCCGT
830 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
4874068 ATG
895 ATG
* * * *
4874071 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCACCCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
4874136 CGGCCAGAGGGGAGGGATGCGCAAGCCGGGGATCGGTCGGGTCCTCCTCTGTGTGTCGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTG-CGTCGATCC
4874201 TACTACCACAACCCTCAGTCTGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
130 TACTACCACAACCCTCAGTCTGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
4874266 CCGATGAAACAAGCTGGCGGGCTGGCGTGTGAGCACTACGCCGGCCAGAGAGACGGGATGCGGAA
195 CCGACGAAACGAGCGGGCGGGC-GGCG-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
4874331 GCTGTGGATCGATAGGCTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
258 GCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
4874396 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** *
4874461 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAATTCGAGATTTTTTTAAA-TTTTT
388 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* ** * *
4874525 CGGAAGGATTTTTTTCCCCCAAACTTAGTAGACCGTGGATCCTTGTATTTTTTTTGGCATGCACA
453 CGGAAGGA-GTTTTGGCCCCAAACTTGGTAGA-CGT-GATCCTTGTATTTTTGTTGGCATGCACA
4874590 AAAAAATTCAGCTAAAAACTC-AAGTGTACAAGA-TTTGTGACCATTTGAAAAAAGTGTCCCCAT
515 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
4874653 TTCAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAAGGGGTGT
580 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
4874718 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCATCCATCGAA
645 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* ** *
4874783 CATCATGTGCGCACACCCCCCGGCCCCCCTATTGTCGGAACCGCAATGCCGCCGGTTAGGTTCTC
710 CATCATGTGCGCACACCCCCCGGCCCCCCGATCATCGGAACC-CAATGCCGCCGGTCAGGTTCTC
* * **
4874848 CGACGATGCTCCAGCGATGGTGCCTCGGGGAAGAAAAAAATGGCCACCAGCACATGCCCGAGCCC
774 CGGCGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAAAATGG-CACCAGCACATGCCCGAGCCC
** * * *
4874913 AGCATGTGCTATCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
837 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
4874974 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCATGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * *
4875039 CGGCCAGAAGGGTAGGATGCGCAAGCCGGGGATCGACCGGGT-CCCCTCTGCGACGCTGCCAAT-
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCG-TGC-GTCGATC
** * * * * *
4875102 CTTGTGCCGC-ACCCTTAGTCTGGTCTAAACTTAGACT-AGGAATGAACTCCGTATGCCTAAG-C
129 CTACTACCACAACCCTCAGTCTGGTCTGATCTTAGACTGA-GAATGAACTCCGTATGCCTAAGCC
* *
4875164 AA-TGA--AAACGA----GCGGGC-G-GGCGGGCA-TACACCGGCCAGAGTAGA-GGGATGC-C-
193 AACCGACGAAACGAGCGGGCGGGCGGCGGCGGGCACTACGCCGGCCAGAG-AGACGGGATGCGCA
* * * *
4875216 AGCCGTGGATTGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTTTGCAT-CCAATGCC
257 AGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* ** *
4875280 ATTTTTATGGCTTGGTAACTTTGTACACATGGTCCCTTAGGCCTTCAACGTGAAGTTTCATCGGC
322 ATTTTTATGGCTT-GTAAATTCATACA-ATGGTCCCTTAAGCCTTC-ACGTGAAGTTTCAT-GGC
* *
4875345 AAGACGACCCCTTCCCG-TTTCTAATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTT
383 AAGACGA---C-T--CGTTTTCT-ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTT
* * * * *
4875409 TTAAAATTTTGTCGGAAGAAGTTTTGGCCCTAGACTTGGTAGATGTGATCCTTGTATTTTTGTTG
441 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* * * **
4875474 GCTTGCACAAAACAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGAAAATTTGAAAAAAG
506 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* *
4875539 TGT-CCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTAAAATGCTCTTTA
571 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * * *
4875603 AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGTATAGGGGGCCAATATAAGGGCCGAGTACCGGCA
636 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * *
4875668 GCCATCGCACATCATGTGCGCACACCCCTCCGAACCCCCCGATCATCAGAACCCCAATGCCGCTG
701 CCCATCGCACATCATGTGCGCACACCCC-CCG-GCCCCCCGATCATCGGAA-CCCAATGCCGCCG
** ***
4875733 GTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
763 GTCAGGTTCTCCGGCGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAAAATGGCACCAGCACAT
* * *
4875798 GCTCGAGCCCAGCATGAGCTGCCGTAA-CC-C---CC-G---G----T---CT--G-AT---CT-
827 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
4875840 -G-AT-
892 CGTATG
* * * * **
4875843 CTTACACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACCAAACGAGCGTGTGGATGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
4875908 CGGCCAGAGGGGCTGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGTTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTG-CGTCGATCC
* * * * ** ** * *
4875973 TGCTATCGCAACCCTCGGTCCAGTCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
130 TACTACCACAACCCTCAGTCTGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
** * *
4876038 CCGACGAAACGAGCAAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGTGCAA
195 CCGACGAAACGAGCGGGCGGGC-GGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
4876103 G-TCGTGGATCGATAGGGTGGTAGTTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
258 GCT-GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * * *
4876167 ATTTTTATGGCTTGTAAATTCGTACAATGGCCCCTTAAGCTTTCA--TG--G--T-A----AGGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
4876221 CGACTCATTTTCCATTTTTCACAATTTTTAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTT
387 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* ** * * *
4876286 TCTGAAAAAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTCTATTTTTGTTGGCATGCATAAA
452 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * **
4876351 AAAATTCAGCGAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCATCATTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
4876416 CGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGATATTTAAGGGGGTGTGA
582 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
4876481 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * ** *
4876546 TCATGTCCGCACTCCCCCCGGCCCCCTCGATCATCGGAACCCTAATTTCGCCGGTCAGATTCT-C
712 TCATGTGCGCACACCCCCCGGCCCCC-CGATCATCGGAACCC-AATGCCGCCGGTCAGGTTCTCC
* * * * *
4876610 --CG--G-T----GATGGTGCCCCGACGAAGAAAAATACGGTACCAGCATATGCCCGAGCCTAGC
775 GGCGATGCTCCGCGATGGTGCCCCGACGAAGAAAAAAATGGCACCAGCACATGCCCGAGCCCAGC
* *
4876666 ATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
840 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
4876724 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
4876789 CGGCCAAAGGGGCAGGATACGTAAGCCGAGGATCGGCCGGGTCCCCCTCTGCATGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGC-GTCGATCC
** * * * *
4876854 TGA-GGCCACAACCCTTGATTC-GGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCC
130 T-ACTACCACAACCC-TCAGTCTGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCC
* * * * * *
4876917 AACTGACAAAACGAACGGGCAGGCGGGCGGACGGGCACTACGTCTGCCAGAGAGACGGGATGCGC
193 AACCGACGAAACGAGCGGGCGGGC-GGCGG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* *
4876982 GAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTCTGCATGCCAATG
256 AAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTGCATGCCAATG
* *
4877047 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGATGTTTCATGGCAA
320 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * *
4877112 TACGACTCGTTTTCTATTTTTCACGATTTTTTAAACTTTTTACGGTTTGGGATTTTTTTAAATTT
385 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
* * * * *
4877177 TTTCGAAAGGGGTTTTGGCCCCTAACTTGTTAGACGAGATCCTTGTATTTTTGTTGGCATGCACA
450 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * *
4877242 AAAACATTCAGCTAAAAACTCGAAGTCTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCAT
515 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
4877307 TTCAGACACTTTAATGGCAACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
580 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
4877372 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
645 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
4877437 CATCATGTGCGCACACCCCCCGGCCCCCCGATCATCGGAACCCTAATGCCACCAGTCAGGTACTC
710 CATCATGTGCGCACACCCCCCGGCCCCCCGATCATCGGAACCC-AATGCCGCCGGTCAGGTTCTC
* * * *
4877502 CGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCA
774 CGGCGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAAAATGGCACCAGCACATGCCCGAGCCCA
* * * **
4877567 GCATGTGCTGTCGCAACCCTTGATCCCATCCGATCTTAGACTGGGAATGAACTCCGTATG
838 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
4877627 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAAACGAGCTTGCGTGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC-GAAACGAGCGTGCGGGCGCTCAG
* * ** * * *
4877692 CCGGCCAGAGGGGCGGGATGCGCAAGCCGCGGATCGACTAGGTCCCCCTCTACATGCTATCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGC-GTCGATC
* * * *
4877757 CTACTACCATAACCCTC-GATCTGATCCGATCTTAGACTGAGAATGAACTCTGTATGCCTAAGCC
129 CTACTACCACAACCCTCAG-TCTGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCC
** * * *
4877821 AACCGATAAAACGAGTGGGCGGAAG-GGCGGACGGGCACTACGTCGGCCAGAGTGACGGGATGCG
193 AACCGACGAAACGAGCGGGCGG--GCGGCGG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* **
4877885 CAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCTGTGTGCCAATG
255 CAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
4877950 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
320 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * *
4878015 GACTATTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTC-AGGATTTTTTTAAATT
385 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATT
* *
4878079 TTTTCGGAAGGCGTTTTGG-CCCAAGACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCT
449 TTTTCGGAAGGAGTTTTGGCCCCAA-ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
4878143 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
513 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
4878208 ATTTTAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGT
578 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * *
4878273 GTGAGTTCTC-ACGGTTTGATGACGGATAGGGGGCCAACATAAGGGTCAAGTACTAGCACCCATC
643 GTGAGTTCTCGA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * *
4878337 GCACATCTTGTGCGCACA-CCCCCGGCCCCCATGATCGTCGAAACCCGAATGCCGCCGGTCAGGT
707 GCACATCATGTGCGCACACCCCCCGGCCCCC-CGATCATCGGAACCC-AATGCCGCCGGTCAGGT
* ** ** * * *
4878401 TCTCTGGCGATG----GC-A-----CCCCGGTGAAGAAAAATGTGGTACCAACAAATGCCCGAGC
770 TCTCCGGCGATGCTCCGCGATGGTGCCCCGACGAAGAAAAAAATGGCACCAGCACATGCCCGAGC
* * * * * **
4878456 CCAGCATGTGCTACCGTAACCCTCGGTCCGGTCCGATCTTGGACTGAGAATGAACTCCATACC
835 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
4878519 CTTAGACTGAGAATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
4878584 CGACCAAATGGGTGGGATGCGCCAGTCAGGGAT----C--G-------AT-C-AG-GTC-A--CT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCGTCGATCCT
* * *
4878630 -CT----CTA---T--GTGCT-G-CCGATCTTAGAGT-AGGAATGAACTCCGTATGCCTAAGCCA
131 ACTACCACAACCCTCAGT-CTGGTCTGATCTTAGACTGA-GAATGAACTCCGTATGCCTAAGCCA
* * *
4878682 ACTGACGAAATGAGCGGGCGGGCGAGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
194 ACCGACGAAACGAGCGGGCGGGCG-GC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * *
4878747 AACCGTGGATCGATAGGCTGGTAGGTGGGTTTAGGCACATTTTCATATTTTTGCATGCCAATGCC
257 AGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
4878812 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
4878877 CGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTT
387 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * * * *
4878942 TTGGAAGGAGTTTTGGCCCCAAACTTAGTAGAAGTGATCCTTGTATTTTTTTTGGCATGCGCAAA
452 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
4879007 AAAATTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
** *
4879071 CAGACACTTTAATAACTACTGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
582 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
4879136 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*
4879201 T-ATGTGCGCACACCTACCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
712 TCATGTGCGCACACC--CCCCGGCCCCC-CGATCATCGGAA-CCCAATGCCGCCGGTCAGGTTCT
* * *
4879265 CCGGTGATGCTCCGACGATGGTGCCCCGACGAAG--AAAAATGCAGCACCAACACATGCCCGAGA
773 CCGGCGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAAAATG--GCACCAGCACATGCCCGAGC
* * * ** * * * **
4879328 CCAACATTTGCTGTCATAACCCTTGGTCTGATCCGATCTTAGACTGGGAATGAACTCTATATG
835 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
4879391 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGAGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** * *
4879456 CAGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGAGTCCCCCTCTATGTGCTGCCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGC-GTCGATCC
* * * * * * *
4879521 TGCTGCCACAACCTTCGAGTC-GGTCTGATCTTAGATTGGGAATGAACTCCATATCCCTAAGCCA
130 TACTACCACAACCCTC-AGTCTGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
4879585 ACTGACGAAATGAGCGGGCGGGC-G-GGCGGCCACTACTCCGGCCAGAGAGACGGCATGCGTAAA
194 ACCGACGAAACGAGCGGGCGGGCGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * * *
4879648 TTGTGGATGGATAGGGTGGTAGGTGGGTTTATGCACATCTTCATATTGCTGCGTGCCAATGCCAT
259 CTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
4879713 TTTTATTGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACG
324 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
*
4879778 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGTGATTTTTTAAAATTTTTTC
389 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * *
4879843 GGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTATTT-TCGGCATGCACAAAA
454 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT-TTTGTTGGCATGCACAAAA
* *
4879907 AAAGTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTC
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
4879972 AGAGC-CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGA
583 AGA-CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * * *
4880036 GTTCTTGAGGTTTGACGAGGGATAGGGGGCCAATCTAAGGGCCAAGTACTAGCTCCCATCACACA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * ** *
4880101 TCATGTGCGCACACCCACCGGCCCCACTGATCATCGTAACCCTAATGCTACCGGTCAAGTTCTCC
712 TCATGTGCGCACACCCCCCGGCCCC-CCGATCATCGGAACCC-AATGCCGCCGGTCAGGTTCTCC
* * * ** *
4880166 GGCGATGCTCTGGCAATGGTGCCCGGGGGAAG--AAAAATGAGACACCAGCACATGCCTGAGCCC
775 GGCGATGCTC-CGCGATGGTGCCCCGACGAAGAAAAAAATG-G-CACCAGCACATGCCCGAGCCC
* * * * * *
4880229 AACATATGCTGCCGTAACCCTCGGTCCAGTCCAATCTTAGAATGGGAATGAACTCCGTATG
837 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
4880290 CTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCATGAAATGAGCGAGTGGGGGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
4880355 CGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGGCCTGGTCCCCCTCTACATGC-TGCTGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCGT-C-GATC
* ** * **
4880419 CTACTATCGTAACCCTCAGTCTGGTCTGATTTTAGACT-AGGAATGAACTTTGTATGCCTAAGCC
129 CTACTACCACAACCCTCAGTCTGGTCTGATCTTAGACTGA-GAATGAACTCCGTATGCCTAAGCC
* * * * * *
4880483 GATCGACGAAACGAGCGGGCGGACAGGCGGGTGGGCTCTACACCGGCCAGAGAGACGGGATGCGC
193 AACCGACGAAACGAGCGGGCGGGC-GGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * *
4880548 AAGCTATGGATCAATAGGGTGGTCGGTGGGTTTAGGCACATCATT-ATATATCTGCATGCCAATG
256 AAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC-TTCATATTTCTGCATGCCAATG
**
4880612 CCATTTTTATGGCTTGTAAATTCATACAATACTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
320 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * *
4880677 GACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTGGGGATTTTTTAAATTTT
385 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
* ** * *
4880742 TTTCGGAAGGGGTTTTGTTCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
450 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
4880807 AAAAAAATCAGATAAAAACTCGAAGTGTACAAGATTTTTGTGACCATTTGAAAAAAGTGTCCCCA
515 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
4880872 TTTCAGATACTTTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGG
579 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA--GGGGG
* * * *
4880937 GGTGAGTTCTTGAGGTTTAATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
642 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
4881002 GCACATCATGTGCGCACA-----C-GCCCCCCG---A----AACCCTAATGCCGCCGGTCAGGTT
707 GCACATCATGTGCGCACACCCCCCGGCCCCCCGATCATCGGAACCC-AATGCCGCCGGTCAGGTT
* ** * *
4881054 CTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACAGCACCGGCACATGCTCGAGC
771 CTCCGGCGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAAAATGGCACCAGCACATGCCCGAG-
* * * *
4881119 CCAGCATGTGAGCATGTGCTGCCGTAACTCTCGGTCCGGTCTGATCTTATACTGGGAATGAACTC
834 CC--C-----AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
4881184 CGTATG
892 CGTATG
* * * * * *
4881190 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCCACCAACGAAACAAGCGTACGGACGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
4881255 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGC-TACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCGT--CGATC
* ** * *
4881319 CTGCTACCACAA--CTTGGT-TGGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CTACTACCACAACCCTCAGTCT-GGTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCC
* * * * *
4881381 GACCGACGAAACGAACAGGGCGGGCGGACGGGCGGGCGGGCACTACACTGGCCAGAGAGATGGGA
193 AACCGACGAAACG---A--GCGGGCGGGC-GGC-GGCGGGCACTACGCCGGCCAGAGAGACGGGA
* *
4881446 TGCGCAAGCTGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCACATTTCT--ATGTA
251 TGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG--
* *
4881509 CCAAAGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
314 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * *
4881574 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTCA
379 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTA
* * **
4881639 AAATTTTTTTGGAAGGTGTTTTGGAGCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
444 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* *
4881704 T-CTA-TAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTG
509 TGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * *
4881767 TCCCCAATCCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAG
573 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * *
4881832 GGAGCGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
638 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * **
4881897 CATCACACATCATGTGTGCACACCCCCCGGCCCCCTGATCACCGGAACCCCAATGCCATCGGTCA
703 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCATCGGAA-CCCAATGCCGCCGGTCA
* ** **
4881962 GGTTCTCCGGTGATGCTCCAGCGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCC
767 GGTTCTCCGGCGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAAAATGGCACCAGCACATGCCC
* * *
4882027 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCATATACTGGGAATGAACTCCGTA
831 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
4882092 TG
896 TG
* * * * *
4882094 GTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCAACGAAACGAACGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
4882159 CGACCAAAGGGGCAGGATGCGCAAGCCGTGGATCAGCCGGGTCCCCCTCTAG-GTAC-T-G--CC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCT-GCGTGCGTCGATCC
* * * * * *
4882219 -AAT-CCTGC-TCCCTCAGTCTGGT-TCGATCTTAGACTGGGAATGAACTCCATATGTCTAAGCC
130 TACTACC-ACAACCCTCAGTCTGGTCT-GATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCC
* * * * *
4882280 AACTGTCGAAACGA----GCAGGC-G-GGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGTAA
193 AACCGACGAAACGAGCGGGCGGGCGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
**
4882339 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
258 GCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
4882404 TTTTTATGGCTTGGAAATTCATACGATGGTCCGC-TAA-CCTTCACGTGAAGTTTCATGGCAAGA
323 TTTTTATGGCTTGTAAATTCATACAATGGTCC-CTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * **
4882467 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTAAAGATTTTTTAAAATTTTT
387 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
*
4882532 TTGGAAGGAG-TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
452 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
4882596 AATATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTC
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
4882661 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTCAAATCTCAAATGCTCTTTAAGCGAGCGTGA
582 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
4882726 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
4882791 TCATGTGCGCACACCCCCCGACCCCCCAGATCGTCGGAACCCCAATGCTGTCGGCCAGGTTCTCC
712 TCATGTGCGCACACCCCCCGGCCCCCC-GATCATCGGAA-CCCAATGCCGCCGGTCAGGTTCTCC
*
4882856 GACGATG
775 GGCGATG
4882863 GTGCCCCAGC
Statistics
Matches: 7615, Mismatches: 919, Indels: 537
0.84 0.10 0.06
Matches are distributed among these distances:
855 58 0.01
856 2 0.00
857 1 0.00
858 11 0.00
859 138 0.02
860 370 0.05
861 58 0.01
862 6 0.00
863 2 0.00
864 1 0.00
865 10 0.00
866 188 0.02
867 144 0.02
868 2 0.00
869 101 0.01
870 24 0.00
871 47 0.01
872 166 0.02
873 6 0.00
874 4 0.00
875 6 0.00
876 4 0.00
877 5 0.00
878 3 0.00
879 8 0.00
880 5 0.00
881 253 0.03
882 65 0.01
883 11 0.00
884 67 0.01
885 346 0.05
886 279 0.04
887 40 0.01
888 39 0.01
889 22 0.00
890 7 0.00
891 47 0.01
892 217 0.03
893 381 0.05
894 168 0.02
895 121 0.02
896 80 0.01
897 14 0.00
898 66 0.01
899 756 0.10
900 318 0.04
901 238 0.03
902 242 0.03
903 1602 0.21
904 482 0.06
905 36 0.00
906 82 0.01
907 183 0.02
908 3 0.00
909 2 0.00
911 2 0.00
912 72 0.01
913 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCGTCGATCCT
ACTACCACAACCCTCAGTCTGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCT
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCGGCCCCCCGATCATCGGAACCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
GCTCCGCGATGGTGCCCCGACGAAGAAAAAAATGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:4874984 original size:26 final size:26
Alignment explanation
Indices: 4874948--4875000 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4874938 CTGGTCCAAT
4874948 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4874974 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4875000 C
1 C
4875001 CTAAGTGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4876734 original size:26 final size:26
Alignment explanation
Indices: 4876698--4876750 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4876688 CCGGTCCGAT
4876698 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4876724 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
4876750 C
1 C
4876751 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4877630 original size:26 final size:26
Alignment explanation
Indices: 4877601--4877653 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4877591 CCCATCCGAT
4877601 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4877627 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4877653 C
1 C
4877654 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4879416 original size:26 final size:26
Alignment explanation
Indices: 4879365--4879417 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4879355 CTGATCCGAT
* *
4879365 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
4879391 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
4879417 C
1 C
4879418 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:4880300 original size:26 final size:26
Alignment explanation
Indices: 4880264--4880316 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4880254 CCAGTCCAAT
4880264 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
4880290 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
4880316 C
1 C
4880317 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:4880447 original size:899 final size:897
Alignment explanation
Indices: 4878642--4882862 Score: 5441
Period size: 899 Copynumber: 4.7 Consensus size: 897
4878632 CTATGTGCTG
* * *
4878642 CCGATCTTAGAGTAGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATGAGCGGGCGGGCGA
1 CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGC--
* *
4878707 GCAGGCGGGCACTACGT-CGGCCAGAGAGACGGGATGCGCAAACCGTGGATCGATAGGCTGGTAG
64 G--GGCGGGCACTAC-TCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
4878771 GTGGGTTTAGGCACATTTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
126 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
4878836 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGA
191 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * *
4878901 TTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAC
256 TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * * *
4878966 TTAGTAGAAGTGATCCTTGTATTTTTTTTGGCATGCGCAAAAAAATTAAGCTAAAAACTCGAAGT
321 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
**
4879031 GTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATAACTACTGGCA
386 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
4879095 GCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
451 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
4879160 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATAT-ATGTGCGCACACCTACCCCGGC
516 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC--CCCCGGC
* * * *
4879224 CCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGC
579 CCCCT-GATCATCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * * * * * *
4879289 CCCGACGAAGAAAAATGCA-GCACCAACACATGCCCGAGACCAACATTTGCTGTCATAACCCTTG
643 CCCGACGAAGAAAAATG-AGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCG
* * ** *
4879353 GTCTGATCCGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTAGGAATGAACTCCGTATGC
707 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * *
4879418 CTAAGTCAACCCACGAAACGAGTGTGCGAGCGCTCAACCAGCCAGAGGGGCGGGATGCGCAAGCC
772 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * ** * * * * *
4879483 GAGGATCGACCGAGTCCCCCTCTATGTGCTGCCGATCTTGCTGCCACAACCTTCGAGTC-GGT
837 GAGGATCGGCCGGGTCCCCCTCTACATGCTGCCGATCCTACTACC-TAACCCTC-AGTCTGGT
* * * * *
4879545 CTGATCTTAGATTGGGAATGAACTCCATATCCCTAAGCCAACTGACGAAATGAGCGGGCGGGCGG
1 CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGG
* * * *** *
4879610 GCGGCCACTACTCCGGCCAGAGAGACGGCATGCGTAAATTGTGGATGGATAGGGTGGTAGGTGGG
66 GCGGGCACTACTCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * *
4879675 TTTATGCACATCTTCATATTGCTGCGTGCCAATGCCATTTTTATTGCTTGTAAATTCATACAATG
131 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
4879740 GTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
196 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* *
4879805 GAAACTTTTTACGGTTCGTGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGT
261 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
4879870 AGACATGATCCTTGTATTATTT-TCGGCATGCACAAAAAAAGTCAGCTAAAAACTCGAAGTGTAC
326 AGACGTGATCCTTGTATT-TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
4879934 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGAGC-CTTTAATGGCTACTGGCAGCA
390 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA-CACTTTAATGGCTACTGGCAGCA
* * *
4879998 AACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGACGAGGGATAGGG
454 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * * *
4880063 GGCCAATCTAAGGGCCAAGTACTAGCTCCCATCACACATCATGTGCGCACACCCACCGGCCCCAC
519 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC-C
* ** * * * * *
4880128 TGATCATCGTAACCCTAATGCTACCGGTCAAGTTCTCCGGCGATGCTCTGGCAATGGTGCCCGGG
583 TGATCATCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA
* * * * * *
4880193 GGAAGAAAAATGAGACACCAGCACATGCCTGAGCCCAACATATGCTGCCGTAACCCTCGGTCCAG
648 CGAAGAAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGG
* * *
4880258 TCCAATCTTAGAATGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCAAAGT
713 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
4880323 CAACCCATGAAATGAGCGAGTGGGGGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGAT
778 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGAT
* * *
4880388 CGGCCTGGTCCCCCTCTACATGCTGCTGATCCTACTATCGTAACCCTCAGTCTGGT
843 CGGCCGGGTCCCCCTCTACATGCTGCCGATCCTACTA-CCTAACCCTCAGTCTGGT
* * * ** *
4880444 CTGATTTTAGACTAGGAATGAACTTTGTATGCCTAAGCCGA-TCGACGAAACGAGCGGGCGGACA
1 CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT-GACGAAACGAGCGGGC-G---
* * * ** * *
4880508 GGCGGGTGGGCTCTACACCGGCCAGAGAGACGGGATGCGCAAGCTATGGATCAATAGGGTGGTCG
61 GGCGGGCGGGCACTACTCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
*
4880573 GTGGGTTTAGGCACATCATT-ATATATCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
126 GTGGGTTTAGGCACATC-TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
** *
4880637 ACAATACTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACG
190 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * * **
4880702 ATTTTTGAAACTTTTTACAGTTGGGGATTTTTTAAATTTTTTTCGGAAGGGGTTTTGTTCCCAAA
255 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * * *
4880767 CATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGATAAAAACTCGAAG
320 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
4880832 TGTACAAGATTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAAAGGCTACTGG
385 TGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * * *
4880897 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGGGGTGAGTTCTTGAGGTTTAATGAAG
449 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAA--GGGGGTGTGAGTTCTCGAGGTTTGATGAGG
4880962 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-----C-
512 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* *
4881021 G-CCCC----C--CGAAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTG
577 GCCCCCTGATCATCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTG
* * *
4881079 CCCCGACGAAGAAAAAT-ACAGCACCGGCACATGCTCGAGCCCAGCATGTGAGCATGTGCTGCCG
642 CCCCGACGAAGAAAAATGA-GGCACCAGCACATGCCCGAG-CC--C-----AGCATGTGCTGCCG
* * *
4881143 TAACTCTCGGTCCGGTCTGATCTTATACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
698 TAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * * *
4881208 TTCGTATGCCTAAGTCCACCAACGAAACAAGCGTACGGACGCTCAGCCGGCCAGAGGGGCGGGAT
763 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * * * * * **
4881273 GCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACC--ACAACTTGG
828 GCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTACATGCTGCCGATCCTACTACCTAAC-CCTCAG
4881336 T-TGGGT
892 TCT-GGT
* *
4881342 CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCGACCGACGAAACGAACAGGGCGGGCG
1 CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACG---A--GC--G-G
* * * *
4881407 GACGGGCGGGCGGGCACTACACTGGCCAGAGAGATGGGATGCGCAAGCTGTGGATCGATAGGGTG
58 G-CGGGCGGGCGGGCACTACTCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * * *
4881472 GTTGGTGGGTTTAGGCACATCTTCACATTTCT--ATGTACCAAAGCCATTTTTATAGCTTGTAAA
122 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG--CCAATGCCATTTTTATGGCTTGTAAA
4881535 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
185 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * **
4881600 TCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTCAAAATTTTTTTGGAAGGTGTTTTGGAG
250 TCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
*
4881665 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT-CTA-TAAAAAATTCAGCTAAAAAC
315 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAAC
* * *
4881728 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCAATCCAGACACTTTAATGGCT
379 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * * *
4881793 ACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGAGCGTGAGTTCTCAAGGTTTGATG
444 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
4881858 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCCC
509 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * ** * *
4881923 CCGGCCCCCTGATCACCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGTGATGCTCCAGCGATG
574 CCGGCCCCCTGATCATCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATG
** * *
4881988 GTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
639 GTGCCCCGACGAAGAAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCC
* * * * *
4882053 TCGGTCTGGTCCGATCATATACTGGGAATGAACTCCGTATGGTTAGACTGGGAATGAACTTCGTA
704 TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * * *
4882118 TGCCTAAGTCAACCAACGAAACGAACGTGCGGGCGCTCAGTCGACCAAAGGGGCAGGATGCGCAA
769 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * ** * * *
4882183 GCCGTGGATCAGCCGGGTCCCCCTCTAGGTACTGCCAAT-C--CT-GCT--CCCTCAGTCTGGT
834 GCCGAGGATCGGCCGGGTCCCCCTCTACATGCTGCCGATCCTACTACCTAACCCTCAGTCTGGT
* * * * *
4882241 TCGATCTTAGACTGGGAATGAACTCCATATGTCTAAGCCAACTGTCGAAACGA----GCAGGCGG
1 CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGG
* * * *
4882302 GCGGGCACTACGCCGGCCAGAGAGACAGGATGCGTAAGCCATGGATCGATAGGGTGGTAGGTGGG
66 GCGGGCACTACTCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
4882367 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGGAAATTCATACGATG
131 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
4882432 GTCCGC-TAA-CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
196 GTCC-CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * *** *
4882495 CGAAACTTTTTGCGGTTAAAGATTTTTTAAAATTTTTTTGGAAGGAG-TTTGGCCCCAAACTTGG
260 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* *
4882559 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAACTGTAC
325 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
4882624 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAA
390 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * *
4882689 ACCTGTCAAATCTCAAATGCTCTTTAAGCGAGCGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
455 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
4882754 GCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGACCCCCCA
520 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-GCCCCCT
* * * * * *
4882819 GATCGTCGGAACCCCAATGCTGTCGGCCAGGTTCTCCGACGATG
584 GATCATCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATG
4882863 GTGCCCCAGC
Statistics
Matches: 2910, Mismatches: 341, Indels: 151
0.86 0.10 0.04
Matches are distributed among these distances:
884 46 0.02
885 302 0.10
886 167 0.06
887 2 0.00
888 3 0.00
891 1 0.00
892 74 0.03
893 2 0.00
894 1 0.00
895 1 0.00
896 1 0.00
897 3 0.00
898 60 0.02
899 758 0.26
900 311 0.11
901 104 0.04
902 38 0.01
903 614 0.21
904 251 0.09
905 2 0.00
906 87 0.03
907 1 0.00
909 1 0.00
910 1 0.00
911 2 0.00
912 77 0.03
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (897 bp):
CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGG
GCGGGCACTACTCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTGA
TCATCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGA
AGAAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCC
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGG
CCGGGTCCCCCTCTACATGCTGCCGATCCTACTACCTAACCCTCAGTCTGGT
Found at i:4881193 original size:26 final size:26
Alignment explanation
Indices: 4881164--4881216 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4881154 CCGGTCTGAT
*
4881164 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4881190 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4881216 C
1 C
4881217 CTAAGTCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4883730 original size:26 final size:26
Alignment explanation
Indices: 4883701--4883750 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
4883691 GTCTGAGCTG
*
4883701 AGACTGGGAATGAACTTCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
4883727 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
4883751 CTAAGTCCAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:4883749 original size:744 final size:730
Alignment explanation
Indices: 4882242--4883606 Score: 2038
Period size: 744 Copynumber: 1.9 Consensus size: 730
4882232 CAGTCTGGTT
* *
4882242 CGATCTTAGACTGGGAATGAACTCCATATGTCTAAGCCAACTGTCGAAACGAGCAGGCGGGCGGG
1 CGATCTTAGACTGGGAATGAACTCCGTATGTCTAAGCCAACCGTCGAAACGAGCAGGCGGGCGGG
*
4882307 CACTACGCCGGCCAGAGAGACAGGATGCGTAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTAAGCCGGCCAGAGAGACAGGATGCGTAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
4882372 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGGAAATTCATACGATGGTCCG
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGGAAATTCATACAATGGTCCC
* *
4882437 CTAACCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACT
196 CTAACCTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCACGATTATCGAAACT
*
4882502 TTTTGCGGTTAAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTGGCCCCAAACTTGGTAGACGTG
261 TTTTGCGGTTAAAGATTTTTTAAAATTTTTTTGAAAGGAGTTTGGCCCCAAACTTGGTAGACGTG
*
4882567 ATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAACTGTACAAGATTTT
326 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTT
* * *
4882632 GTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTCA
391 GTGACCATTTCAAAAAAGTGTCCCCATTCCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
4882697 AATCTCAAATGCTCTTTAAGCGAGCGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
456 AATCTCAAATGCCCTTTAAGCGAGCGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
*
4882762 AAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGACCCCCCAGATCGTCG
521 AAGGGCCAAGTACCAACACCCATCACACATCATGTGCGCACACCCCCCGACCCCCCAGATCGTCG
* *
4882827 GAACCCCAATGCTGTCGGCCAGGTTCTCCGACGATGGTGCCCCAGCAAAGAAAAATACGGCACCA
586 GAACCCCAATGCTGCCGGCCAGGTTCTCCGACGATGGTGCCCCAGCAAAGAAAAATACGACACCA
** ** * * *
4882892 GAGGGGCGGGATGCGCAAGCCGTGGATCAGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGC
651 GAAAGGCCCGATGCCCAA-CCATGGAT-AGTCGGGTCCCCCTCTGTGT-CT-CCGATCCTGCAGC
* * * *
4882957 CGCAACCCTCAGTCCAGTC
712 CGCAACCCGCAATCAACTC
* * *
4882976 CGATCTTCGACTGGGAATGAACTCCGTATGTCTAAGCCAACCGTCGAATCGAGCGGGCGGGCCGA
1 CGATCTTAGACTGGGAATGAACTCCGTATGTCTAAGCCAACCGTCGAA---A-CGAGC-AG--G-
* *
4883041 CGGGCGGGCACTAAGCCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGT
58 CGGGCGGGCACTAAGCCGGCCAGAGAGACAGGATGCGTAAGCCATGGATCGATAGGGTGGTAGGT
4883106 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGGAAATTCATACA
123 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGGAAATTCATACA
* *
4883171 ATGGTCCCCTAAGCCTTCACGTGAAGTTTCACGGCAAGATGACTTGTTTTCTATTTTTCACGATT
188 ATGGTCCCCTAA-CCTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCACGATT
*** *
4883236 ATCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGACTTTTGGCCCCAAACTT
252 ATCGAAACTTTTTGCGGTTAAAGATTTTTTAAAATTTTTTTGAAAGGA-GTTTGGCCCCAAACTT
* * *
4883301 GGTAGACGTGATCCTTGTATTTTTGTT-GCAATGTACAAAAAAATTCGGCTAAAAACTCGAAGTG
316 GGTAGACGTGATCCTTGTATTTTTGTTGGC-ATGCACAAAAAAATTCAGCTAAAAACTCGAACTG
* *
4883365 TACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTATTGGCAG
380 TACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTCCAAACACTTTAATGGCTACTGGCAG
* * * *
4883430 TAAACTTGTAAAATCTTAAATGCCCTTTAA-CG-GTTTGTGAGTTCTCGAGGTTTGATGAGGGAT
445 CAAACCTGTAAAATCTCAAATGCCCTTTAAGCGAG--CGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
4883493 AGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCCCACATCATGTGTGCACACCCCCCGGCC
508 AGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCACACATCATGTGCGCACACCCCCCGACC
* * * *
4883558 CCCCCGATCG-CTGGAACCCCAATG-TCGCCGGTCAGGTTTTTCGACGATG
573 CCCCAGATCGTC-GGAACCCCAATGCT-GCCGGCCAGGTTCTCCGACGATG
4883607 CTCCGACGAT
Statistics
Matches: 574, Mismatches: 42, Indels: 20
0.90 0.07 0.03
Matches are distributed among these distances:
734 45 0.08
737 1 0.00
738 4 0.01
739 1 0.00
741 1 0.00
742 138 0.24
743 98 0.17
744 286 0.50
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (730 bp):
CGATCTTAGACTGGGAATGAACTCCGTATGTCTAAGCCAACCGTCGAAACGAGCAGGCGGGCGGG
CACTAAGCCGGCCAGAGAGACAGGATGCGTAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGGAAATTCATACAATGGTCCC
CTAACCTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCACGATTATCGAAACT
TTTTGCGGTTAAAGATTTTTTAAAATTTTTTTGAAAGGAGTTTGGCCCCAAACTTGGTAGACGTG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTT
GTGACCATTTCAAAAAAGTGTCCCCATTCCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCCCTTTAAGCGAGCGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAACACCCATCACACATCATGTGCGCACACCCCCCGACCCCCCAGATCGTCG
GAACCCCAATGCTGCCGGCCAGGTTCTCCGACGATGGTGCCCCAGCAAAGAAAAATACGACACCA
GAAAGGCCCGATGCCCAACCATGGATAGTCGGGTCCCCCTCTGTGTCTCCGATCCTGCAGCCGCA
ACCCGCAATCAACTC
Found at i:4884704 original size:906 final size:899
Alignment explanation
Indices: 4882888--4890774 Score: 10298
Period size: 902 Copynumber: 8.8 Consensus size: 899
4882878 AAAATACGGC
* * * *
4882888 ACCAGAGGGGCGGGATGCGCAAGCCGTGGATCAGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTG
1 ACCAGAGGGGCGGGATGCGCAAG-CGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* * * *
4882953 CTGCCGCAACCCTCAGTCCAGTCCGATCTTCGACTGGGAATGAACTCCGTATGTCTAAGCCAACC
65 CTGCCGCAACCCTCAGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
4883018 GTCGAATCGAGCGGGCGGGCCGACGGGCGGGCACTAAGCCGGCCAGAGAGACGGGATGCGTAAGC
130 GTCGAAACGAGCGGGCGGGCCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAGC
4883083 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
195 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TGCATGCCAATGCCATT
* * * *
4883148 TTTATGGCTTGGAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCACGGCAAGATGA
259 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * * * *
4883213 CTTGTTTTCTATTTTTCACGATTATCGAAACTTTTTGCGGTTC-GGGATTTTTTAAAATTTTTTT
324 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGAGATTTTTTAAAATTTTTTC
*
4883277 GAAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT-GCAATGTACAAAA
389 GAAAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC-ATGCACAAAA
* *
4883341 AAATTCGGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTC
452 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * * * * **
4883406 AAACACTTTAATGGCTATTGGCAGTAAACTTGTAAAATCTTAAATGCCCTTTAACGGTTTGTGAG
517 AAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAG
* *
4883471 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCCCACAT
582 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
4883536 CATGTGTGCACACCCCCCGGCCCCCCCGATCG-CTGGAACCCCAATGTCGCCGGTCAGGTTTTTC
647 CATGTGCGCACACCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * *
4883600 GACGATGCTCCGACGATGGTGCCCCGTCGAAGAAAAATGCGACACCAGCAAATGCCCGAGCCCAA
711 GACGATGCTCCGACGATGGTGCCCC--AGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * * *
4883665 CATGTGCTGCCACAACCTTAGGT-TCGGTCTGAGCTGAGACTGGGAATGAACTTCGTATGCTTAG
774 CATGTGCTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * * * **
4883729 ACTGGGAATGAACTCCGTATGCCTAAGTCCACCAACAAAACAAGTGTACGGACGCTCAGTCG
838 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAACCG
* * ** * * *
4883791 GCCAGAGGGGCGGGATGCACAAGTCGGGGATCGGCCGGGTACCCGTTTTGCATGCTGTCGATCCT
1 ACCAGAGGGGCGGGATGCGCAAG-CGGGGATCGGCCGGGT-CCCCCTCTGCGTGCTGCCGATCCT
* * ** **
4883856 GCTGCTGCAACCCTCGGTCCTGTCTGATCTTAGACTAAGAATGAACTCCGTATGCCTAAGTGAAC
64 GCTGCCGCAACCCTCAGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * ** * * *
4883921 CGACGAAACGAGCAGGCGGGCTGGTAGGCGGGCACTACACCGGCCAGAGAGACGGTATGCGCAAG
129 CGTCGAAACGAGCGGGCGGGCCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAG
*
4883986 CCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTGGCATGCCAATGCCAT
194 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTT-GCATGCCAATGCCAT
* *
4884051 TTTTATGGCTTGTCAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACG
258 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
** * * *
4884116 ACTCGTTTTTCTATTTTTCACAATTTTTAAAACATTTTATGGTTCAGA-ATTTTTTAAAATTTTT
323 ACTCG-TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGAGATTTTTTAAAATTTTT
* * * * *
4884180 TCAAAAGGATTTTTGGCCCCAAACTTGCTAGACGTGATCCTTATAATTTTTTTTGGCATGCAAAA
387 TCGAAAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTGTTGGCATGCACAA
* * *
4884245 AAAAATTCAGCTAAAAACTCAAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATT
450 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
4884310 TCAAACACTTTATTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
515 TCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTG
* *
4884375 AGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCAC
580 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * **
4884440 ATCATGTGTGCACACCCCCCGGCCCCCCCGATCG-CTAGAACCCCAATGCCATCGGTCAGGTTCT
645 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCT
* * *
4884504 CCGACGATGCTCC-AGCGATGGTGCCCCGATGAAGAGAAATGTGGCACCAGCACATGACCGAGCC
709 CCGACGATGCTCCGA-CGATGGTGCCCC-A-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * *
4884568 CAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCATAGACTGGGAATGAACTCCGTATGCTT
771 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * ** * *
4884633 ATACAGGGAATGAACTTTGTATGCCTAAGTCAACCAACGAAATGAGCATGCGGGCGCTCAACCG
836 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAACCG
* * *
4884697 ACCAGAGGGGCGGG-T------------A-------GGTCCCCCTCTACATGCTGTCGATCCTGC
1 ACCAGAGGGGCGGGATGCGCAAGCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
** * * *
4884742 TGTTGCAACCCCCAGT-TTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACC
66 TGCCGCAACCCTCAGTCCT-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * **
4884806 GTCGAAACGA----GC--G--GGCGGGCGGGCACTACGCCAGCCAGAGACATAGGATGCGTAAGC
130 GTCGAAACGAGCGGGCGGGCCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAGC
*
4884863 CGTGGATCGATAGGGTGGTAGGTGGGTTTA-GCACATCTTCATATTTCTGCATGCCAAGGCCATT
195 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TGCATGCCAATGCCATT
* *
4884927 TTTATGGCTTGGAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
259 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
4884992 CCCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTC-GAGATTTTCTAAAATTTTTTC
324 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGAGATTTTTTAAAATTTTTTC
* * * * *
4885056 GGAAGGAGTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCGCAAAAAT
389 GAAAGGATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
4885121 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTCGA
454 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-A
* * * * *
4885185 GACACTTTAATCGCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGCGAGCGTGAGT
518 AACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGT
* * *
4885250 TCTCGAGGTTTGATGAGCGATAGGGGG-CAATATAAGGGCCAAGTACCAGCACCCATCACACACC
583 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
** *
4885314 ATGTGCGCACACCCCCTCGGCCCCCCAAATCGTCGGAACCCCAATGCCGCCGGCCAGGTTCTCCG
648 ATGTGCGCACACCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * *
4885379 ACGATGCTCCGATGATGGTGCCCCAACAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
712 ACGATGCTCCGACGATGGTGCCCC-A-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * *
4885444 ATGTGCTACCGCAACCCTCGATCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGAC
775 ATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
4885509 TGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAACCG
840 TGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAACCG
* * * * * *
4885569 GCTAGAGGGGCGGGATGTGCAAGCTGTGGATCGGTCGGGTCCCCC-CTTGCGTGCTACCGATCCT
1 ACCAGAGGGGCGGGATGCGCAAGC-GGGGATCGGCCGGGTCCCCCTC-TGCGTGCTGCCGATCCT
* * * * *
4885633 GCTACCGTAACCCTTAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAAC
64 GCTGCCGCAACCCTCAGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
4885698 CGTCGAAACGAGCGGGCGGGCCGACGGGCGAGCACTACGTCGGCCAGAGAGACAGGATGCGTAAG
129 CGTCGAAACGAGCGGGCGGGCCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAG
* *
4885763 CGGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCCCATCTTCATATTTTTGCATGCCAATGCCAT
194 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTTGCATGCCAATGCCAT
* *
4885828 TTTTATGGCTTGGAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
258 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
4885893 ACCCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTT-TGAGATTTTCTAAAATTTTTT
323 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGAGATTTTTTAAAATTTTTT
* * *
4885957 CGGAAGGAGTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
388 CGAAAGGATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
4886022 TATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTCG
453 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-
* * * * *
4886086 AGACACTTTAATCGCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGCGAGCGTGAG
517 AAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAG
* * *
4886151 TTCTCGAGGTTTGATGAGCGATAGGGGG-CAATATAAGGGCCAAGTACCAGCACCCATCACACAC
582 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
** *
4886215 CATGTGCGCACACCCCCTCGGCCCCCCAAATCGTCGGAACCCCAATGCCGCCGGCCAGGTTCTCC
647 CATGTGCGCACACCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * *
4886280 GACGATGCTCCGATGATGGTGCCCCAACAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
711 GACGATGCTCCGACGATGGTGCCCC-A-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
4886345 CATGTGCTACCGCAACCCTCGATCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGA
774 CATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
4886410 CTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAACCG
839 CTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAACCG
* * * * * *
4886471 GCTAGAGGGGCGGGATGTGCAAGCTGTGGATCGGTCGGGTCCCCC-CTTGCGTGCTACCGATCCT
1 ACCAGAGGGGCGGGATGCGCAAGC-GGGGATCGGCCGGGTCCCCCTC-TGCGTGCTGCCGATCCT
* * * *
4886535 GCTACAGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAAC
64 GCTGCCGCAACCCTCAGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
4886600 CGTCGAAACGAGCGGGCGGGCCGACGGGCGAGCACTACGTCGGCCAGAGAGACAGGATGCGTAAG
129 CGTCGAAACGAGCGGGCGGGCCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAG
* *
4886665 CGGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCCCATCTTCATATTTTTGCATGCCAATGCCAT
194 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTTGCATGCCAATGCCAT
* * * * * *
4886730 TTTTATGGCTTGGAAATTCATACAATGGTCCGTTTAGCCTTCACATGAAGTTTCGTGGCAAGATG
258 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * **
4886795 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT-TGAGATTTTTAAAAAAATTTT
323 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGAGATTTTTTAAAATTTTTT
* * *
4886859 C-AGAAGGAGTTTGGCCCCAAACTTGGTACACGTGATTCTTGTATTTTTGTTGGCATGCACAAAA
388 CGA-AAGGATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
4886923 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCC
452 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
4886988 AGACACTTTATTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAG
517 AAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAG
* * * *
4887053 TTCTCAAGGTTTGATGAGCGATAGGGGGTCAATATAAGGGCCAAGTACCAGCACCCATCGCACAA
582 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
4887118 CATGTGTGCACACCAACCCCCCGGCCCCCCAGATCGCCAGAACCCCAATGCCGCCAGCCAGGTTC
647 CA--TGTGCGCA-C-ACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* *
4887183 TCCGACGATGCTCCGACGATGGTGCCCCAGCAAAGAAAAATGTGGCACCAGCACATGCCTGAGCC
708 TCCGACGATGCTCCGACGATGGTGCCCCAG--AAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * *
4887248 CAGTATTTGCTGCCGCAACCC-CAGGTCTGGTCCGATCTTTGACTGGGAATGAACTCCGTATGCT
771 CAGCATGTGCTGCCGCAACCCTC-GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
4887312 TAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGAGCTCAGCC-
835 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAACCG
* * *
4887376 AGCCAGAGGGGCGGGATGCGCAAGCCGTGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCCT
1 A-CCAGAGGGGCGGGATGCGCAAG-CGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* ** * *
4887441 ACTGTTGCAACCCTCAGTCCAGT-TCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
64 GCTGCCGCAACCCTCAGTCCTGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
4887505 CCGTCGAAACGAGCGGG-TGGACGGCGGGTGGGCACTATGTCGGCCAGAGAGACGGGATGCGTAA
128 CCGTCGAAACGAGCGGGCGGGCCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAA
*
4887569 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTCGGCACATCTTCATATTTCTGCATGCCAATGCCA
193 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TGCATGCCAATGCCA
* *
4887634 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCCAGAA
257 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
4887699 GACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTT-TGGGATTTTTT-AACTTTTT
322 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGAGATTTTTTAAAATTTTT
* * ** *
4887762 TTGGAAGGAGTTTTGGTGCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAG
387 TCGAAAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
4887827 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTC
451 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
4887892 CAAACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAAGCGTGA
516 CAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGA
* *
4887957 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAACACCCATCGCACA
581 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
4888022 TCATGTGTGCACACGCCCCCCGGCCCCCCAGATCGTCGGAACCCAAATGCCGTCGGCCAAGTTCT
646 TCATGTGCGCACA--CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * *
4888087 CCGGCGATGCTCTGATGATGGTGCCCCAGCAAAGAAAAATGCAGCACCAGCACATTCCCGAGCCC
709 CCGACGATGCTCCGACGATGGTGCCCCAG--AAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * * * *
4888152 -GACATGTCCTGCTGCAACCCTTGGT-TCCGTCCGATGTTAGACTGGGAATGAACTCTGTATGCT
772 AG-CATGTGCTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * * * ** *
4888215 TAGACTGGAAATGAACTCCGTATGCCTAAGTCCACCCATGAAACAAGCGTACGAACGCTCAGCC-
835 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAACCG
* * ***
4888279 AGCCAGAGGGGCGGGATGTGCAAGTCGGGGATCGGCCGGGTCTCCCTCTGCGTGCTATTGATCCT
1 A-CCAGAGGGGCGGGATGCGCAAG-CGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * * *
4888344 GCTGCCGCAACCCTCGGTCTTGTCTGATCTTAGACTGAGAATGAACTCTGTATGCCTAAGCCAAC
64 GCTGCCGCAACCCTCAGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * * *
4888409 CGACGAAACCAGCAGGCGGACGGGCAGGCAGGCACTACACCGGCCAGAGAGACGGGATGCGCAAG
129 CGTCGAAACGAGCGGGCGGGCCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAG
* *
4888474 CCGTGGATCGAGAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTG-GTGTCCAATGCCAT
194 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTGCATG-CCAATGCCAT
4888538 TTTTATGGCTTGTAAATTCATACAATGGTCCC-TAAGCCTTCACGTGAAGTTTCATGGCAAGACG
258 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * ** * *
4888602 ACTCGTTTTCTTTTTTTCACGATTTTCAAAACTTTTTACGGTTCA-AAATTTTTTTAAATTTTTT
323 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGAGATTTTTTAAAATTTTTT
* * * * * *
4888666 CGGAAA-GAGTTTCGGTCCGAAACTTGGTAGACCTGATCATTATATTTTTGTTGGCATGCACAAA
388 C-GAAAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
4888730 AACATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
451 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
** *
4888795 TGAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
516 CAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGA
* * *
4888860 GTTTTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCGCACA
581 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
4888925 TCATGTGCGCACACTCCCCC-GACCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTC
646 TCATGTGCGCACAC-CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * *
4888989 CGATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCCCATGCCCGAGCCCA
710 CGACGATGCTCCGACGATGGTGCCCC-A-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * * *
4889054 GCTTGTGCTGTCGAAACCCTCGGTCTGGTTTGATCTTAAATTGGGAATGAACTCCGTATGCTTAG
773 GCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
4889119 ACTGGGAATGAACTCCGTATGCCTAAGTCAACTC-ACGAAACGAGCGTGCGGGCGCTCAACCG
838 ACTGGGAATGAACTCCGTATGCCTAAGTCAAC-CAACGAAACGAGCGTGCGGGCGCTCAACCG
* ** * * *
4889181 ACCAGAGGGGCGGGATGGGCAAGCCGGGGATCAACCAGGTCCCACTCTGCGTGCTCCCGATCCTG
1 ACCAGAGGGGCGGGATGCGCAAG-CGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* * *
4889246 CTACTGCAACCCTC-GATCC-GATCTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAA
65 CTGCCGCAACCCTCAG-TCCTG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * * *
4889309 CCGACGAAATGAGTGGGCGGGCGGGCGGGTGAGCACTACGTCGGCCAGAGAGACGGGATGTGCAA
128 CCGTCGAAACGAGCGGGCGGGCCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAA
* * * *
4889374 GCTGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATATTCATATTTCTGCATGCCCATGCCA
193 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TGCATGCCAATGCCA
* * *
4889439 TTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGCGAAGTTTCATGGCAAGAA
257 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
4889504 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCA-AGATTTTTTAAAATTTTT
322 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGAGATTTTTTAAAATTTTT
* *
4889568 TCAGAAA-AATTTTTGGCTCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
387 TC-GAAAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
4889632 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATT
450 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
4889697 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTGTTTATGGGGGTGTG
515 TCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTG
*
4889762 AGTTCTCGAGG-TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCGCAC
580 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
** ** *
4889826 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAAAACCGTTGGTCAGGTTCTT
645 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* *
4889891 CGACGATGGTGCC--C--T-G-G---CA-AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAA
710 CGACGATGCT-CCGACGATGGTGCCCCAGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
4889946 CATGTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGA
774 CATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * **
4890011 TTGGGAATGAACTCCGTTTGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
839 CTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAACCG
* *
4890072 GCCAGAGGGGCGGGATGCGCAA-----G-T----CGGGTCCCCCTCTTCGTGCTGCCGATCCTGC
1 ACCAGAGGGGCGGGATGCGCAAGCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* ** * * * * *
4890127 TGCCG-TACCCTTGGT-CTGGTCTGATCTCAGATTGGGAATGAACTCCATATGCGTAGGCCAACC
66 TGCCGCAACCCTCAGTCCT-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *
4890190 GACGGAACGAGCGAGCGAGCAGGTGGGCGGGTGGGCGGGCACTACACCAGCCAGAGAGACGGGAT
130 GTC-GAA--A-CGAGC--G--GGCGGGCCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
*
4890255 GCGCAAGCCGTGGAT-GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCA
187 GCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTTGCATGCCA
* * *
4890319 ATGCCA----TATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACATGAAGTTTCCTGG
251 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * **
4890380 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACATTTTACGGTT-TGAGATTTTTTTTA
316 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGAGATTTTTTAAA
* *
4890444 ATTTTTTCGAAAGGTGTTTTGG-CCCAAACTGGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
381 ATTTTTTCGAAAGG-ATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * *
4890508 CACAAAAAAATTCAGCTAAAAACTCGAAGTATACAAGATATTGTGATCATTTGAAAAAAGTGTCC
445 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * *
4890573 CCATTTCAAACAATTTAATGGCTACTAGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGG
510 CCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGA
* * ** *
4890638 GTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATGAGGGCCAACCACCAGCAGCCAT
575 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * *
4890703 CGCATATCATGTGCGGACACCCCCTCGGCCCCCCCGATCGTCGGAACCCTAATG-CGCCGGTCAG
640 CGCACATCATGTGCGCACACCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAG
4890767 GTTCTCCG
704 GTTCTCCG
4890775 GTCCGATCTT
Statistics
Matches: 6253, Mismatches: 621, Indels: 241
0.88 0.09 0.03
Matches are distributed among these distances:
871 52 0.01
872 382 0.06
873 35 0.01
874 56 0.01
875 95 0.02
876 65 0.01
878 2 0.00
879 48 0.01
880 37 0.01
881 179 0.03
882 203 0.03
883 30 0.00
884 85 0.01
885 5 0.00
886 49 0.01
887 53 0.01
890 1 0.00
891 164 0.03
892 2 0.00
893 87 0.01
894 1 0.00
897 3 0.00
898 1 0.00
899 2 0.00
900 2 0.00
901 470 0.08
902 1490 0.24
903 983 0.16
904 353 0.06
905 542 0.09
906 765 0.12
907 11 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
ACCAGAGGGGCGGGATGCGCAAGCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
TGCCGCAACCCTCAGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
TCGAAACGAGCGGGCGGGCCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTGCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGAGATTTTTTAAAATTTTTTCGA
AAGGATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
TGCTCCGACGATGGTGCCCCAGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAACCG
Found at i:4885512 original size:26 final size:26
Alignment explanation
Indices: 4885476--4885528 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4885466 CTGGTCTGAT
*
4885476 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4885502 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4885528 C
1 C
4885529 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4886414 original size:26 final size:26
Alignment explanation
Indices: 4886378--4886430 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4886368 CTGGTCTGAT
*
4886378 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4886404 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4886430 C
1 C
4886431 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4888227 original size:26 final size:26
Alignment explanation
Indices: 4888181--4888239 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
4888171 CTTGGTTCCG
*
4888181 TCCG-ATG-TTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTGGAAATGAAC
*
4888205 TCTGTATGCTTAGACTGGAAATGAAC
1 TCCGTATGCTTAGACTGGAAATGAAC
4888231 TCCGTATGC
1 TCCGTATGC
4888240 CTAAGTCCAC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
24 3 0.10
25 3 0.10
26 24 0.80
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
TCCGTATGCTTAGACTGGAAATGAAC
Found at i:4890833 original size:26 final size:26
Alignment explanation
Indices: 4890782--4890834 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4890772 CCGGTCCGAT
*
4890782 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4890808 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
4890834 C
1 C
4890835 CCAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4891543 original size:799 final size:793
Alignment explanation
Indices: 4889968--4891575 Score: 2137
Period size: 799 Copynumber: 2.0 Consensus size: 793
4889958 CAACCCTCAG
* * * *
4889968 TCCGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTTTGCC
1 TCCGGTCCGATCTTAGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCC
* *
4890033 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCG
66 CAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCG
* * * * * * ** *
4890098 GGTCCCCCTCTTCGTGCTGCCGATCCTGCTGCCGTACCCTTGGTCTGGTCTGATCTCAGATTGGG
131 GGTCCCCCTCTGCGTGCTACCGATCCTACTGCCGCACACTCGGTCTGGTCCAATCTCAGACTGGG
* * *
4890163 AATGAACTCCATATGCGTAGGCCAACCGACGGAACGAGCGAGCGAGCAGGTGGGCGGGTGGGCGG
196 AATGAACTCCATATGCCTAAGCCAACC-AC-GAACGA--GAACGAGC--G-GGGCGGGT--G-GG
4890228 GCACTACACCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATGATAGGGTGGTAGGTGGGTTTAG
251 GCACTA-ACCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATGATAGGGTGGTAGGTGGGTTTAG
* * *
4890293 GCACATCTTCATATTTTTGCATGCCAATGCCATATGGCTTGTAAATTCATACAATGGTCCCTTAA
315 GCACATCTTCATATTTCTACATGCCAATGCCATATGGCTTGTAAATTCATACAATGGTCCCGTAA
* *
4890358 GACTTCACATGAAGTTTCCTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACATTT
380 GACTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACATTT
* * *
4890423 TACGGTTTGAGATTTTTTTTAATTTTTTCGAAAGGTGTTTTGGCCCAAACTGGGTAGACGTGATC
445 TACGGTTCGAGATTTTTTTAAATTTTTTCGAAAGGAGTTTTGGCCCAAACTGGGTAGACGTGATC
* * *
4890488 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTATACAAGATATTGTG
510 ATTCTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTATACAAGATATTGTG
* * * * *
4890553 ATCATTTGAAAAAAGTGTCCCCATTTCAAACAATTTAATGGCTACTAGCAGCAAACTTGTAAAAT
575 ACCATTTGAAAAAAGTGTCCCCATTCCAAACAATTTAATGGCTACTAGCAACAAACCTATAAAAT
* * * *
4890618 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATGAG
640 CTCAAATGCTCTTTAAGGGAGCGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * ** * *
4890683 GGCCAACCACCAGCAGCCATCGCATATCATGTGCGGACACCCCCTCGGCCCCCCCGATCGTCGGA
705 GGCCAACCACCAGCACCCATCGCACATCATGTGCACACACCCCCTCGACCCCCCAGATCGTCGGA
* * *
4890748 ACCCTAATG-CGCCGGTCAGGTTC
770 ACCCCAACGTCGCCGGCCAGGTTC
* *
4890771 TCCGGTCCGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCCGTATGCC
1 TCCGGTCCGATCTTAGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCC
*
4890836 CAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGCCAGAGGGGTGGGATGCGCAAGCCG
66 CAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGCCAGAGGGGCGGGATGCGC-A----
*
4890901 AGGATCAGCTAGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCGCA-ACTCGGTTTGGTCCAAT
126 A-G-TC-G---GGTCCCCCTCTGCGTGCTACCGATCCTACTGCCGCACACTCGGTCTGGTCCAAT
* * *
4890965 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-C-C-AACGA-AACTAGC-GGGCGGGT-G
185 CTCAGACTGGGAATGAACTCCATATGCCTAAGCCAACCACGAACGAGAACGAGCGGGGCGGGTGG
* * *
4891024 GGCACT-A-CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTA
250 GGCACTAACCAGCCAGAGAGACGGGATGCGCAAGCCGTGGAT-GATAGGGTGGTAGGTGGGTTTA
*
4891087 GGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
314 GGCACATCTTCATATTTCTACATGCCAATGCCA----TATGGCTTGTAAATTCATACAATGGTCC
* * *
4891152 CGTAAGCCTTCACGTGCAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
375 CGTAAGACTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* ** * * * *
4891217 CTTTTTGTGGTTCGAGA-TTTTTTAAACTTTTTTTGGAAGGAGTTTTGGTGCCAAACTTGGTAGA
440 CATTTTACGGTTCGAGATTTTTTTAAA-TTTTTTCGAAAGGAGTTTTGG-CCCAAACTGGGTAGA
* * * *
4891281 TGTGATCATTCTATTTTTCTTGGCATGCACAAAAAAATTCAGCTACAAATTCGAAGTGTACAAGA
503 CGTGATCATTCTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTATACAAGA
* * *
4891346 TTTTGTGACCATTTG-AAAAAGTGTCCCCATTCCAGACACTTTAATGGCTAC-AGCAACAAACCT
568 TATTGTGACCATTTGAAAAAAGTGTCCCCATTCCAAACAATTTAATGGCTACTAGCAACAAACCT
*
4891409 ATAAAATCTCAAATGCTCTTTAAGGGAGCGTGTGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
633 ATAAAATCTCAAATGCTCTTTAAGGGAGCGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
**
4891474 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACAGCCCCC-CTGACCCCCCAG
698 ATATAAGGGCCAACCACCAGCACCCATCGCACATCATGTGCACACA-CCCCCTC-GACCCCCCAG
4891538 ATCGTCGGAACCCCAACGTCGCCGGCCAGGTTC
761 ATCGTCGGAACCCCAACGTCGCCGGCCAGGTTC
4891571 TCCGG
1 TCCGG
4891576 CGATGCTTCA
Statistics
Matches: 706, Mismatches: 78, Indels: 45
0.85 0.09 0.05
Matches are distributed among these distances:
794 31 0.04
795 52 0.07
797 7 0.01
798 118 0.17
799 180 0.25
800 102 0.14
801 8 0.01
803 115 0.16
804 1 0.00
805 5 0.01
808 6 0.01
809 1 0.00
810 3 0.00
811 1 0.00
812 1 0.00
813 43 0.06
814 32 0.05
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (793 bp):
TCCGGTCCGATCTTAGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCC
CAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCG
GGTCCCCCTCTGCGTGCTACCGATCCTACTGCCGCACACTCGGTCTGGTCCAATCTCAGACTGGG
AATGAACTCCATATGCCTAAGCCAACCACGAACGAGAACGAGCGGGGCGGGTGGGGCACTAACCA
GCCAGAGAGACGGGATGCGCAAGCCGTGGATGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
TATTTCTACATGCCAATGCCATATGGCTTGTAAATTCATACAATGGTCCCGTAAGACTTCACATG
AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACATTTTACGGTTCGAG
ATTTTTTTAAATTTTTTCGAAAGGAGTTTTGGCCCAAACTGGGTAGACGTGATCATTCTATTTTT
CTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTATACAAGATATTGTGACCATTTGAAA
AAAGTGTCCCCATTCCAAACAATTTAATGGCTACTAGCAACAAACCTATAAAATCTCAAATGCTC
TTTAAGGGAGCGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACCACC
AGCACCCATCGCACATCATGTGCACACACCCCCTCGACCCCCCAGATCGTCGGAACCCCAACGTC
GCCGGCCAGGTTC
Found at i:4892565 original size:26 final size:26
Alignment explanation
Indices: 4892536--4892588 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4892526 TCGATCCGAT
*
4892536 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4892562 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4892588 C
1 C
4892589 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4893468 original size:26 final size:26
Alignment explanation
Indices: 4893439--4893488 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
4893429 CCGGTCTGAT
*
4893439 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
4893465 CTTAGACTGGGAGTGAACTTCGTA
1 CTTAGACTGGGAATGAACTCCGTA
4893489 CGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.