Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 36 of 129
Found at i:4894134 original size:899 final size:899
Alignment explanation
Indices: 4890771--4896377 Score: 7422
Period size: 899 Copynumber: 6.3 Consensus size: 899
4890761 GGTCAGGTTC
**
4890771 TCCGGTCCGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCCGTATGCC
1 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
4890836 CAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGCCAGAGGGGTGGGATGCGCAAGCCG
66 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * * * * **
4890901 AGGATCAGCTAGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCGCAA--CTCGGTTTGGTCCAA
131 GGGATCGGCTGGGTCCCCCTCTACGTGCTACTGATCCTGCTGTCGCAACCCTCAGTTTGGTCTGA
* *
4890964 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACTAGCGGGC-GG-GTG-GG
196 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGCGG
* *
4891026 -CACTA---CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTA
261 ACACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
4891087 GGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
326 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
4891152 CGTAAGCCTTCACGTGCAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
391 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
** * * * ** *
4891217 CTTTTTGTGGTTCGAGATTTTTTAAACTTTTTTTGGAAGGAGTTTTGGTGCCAAACTTGGTAGAT
456 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * * * *
4891282 GTGATCATTCTATTTTTCTTGGCATGCACAAAAAAATTCAGCTACAAATTCGAAGTGTACAAGAT
521 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGAT
* * * *
4891347 TTTGTGACCATTTG-AAAAAGTGTCCCCATTCCAGACACTTTAATGGCTAC-AGCAACAAACCTA
586 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * *
4891410 TAAAATCTCAAATGCTCTTTAAGGGAGCGTGTGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
651 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * *
4891475 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACAGCCCCCCTGACCCCCCAGAT
716 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-GGCCCCCCCGAT
* * * * * * *
4891540 CGTCGGAACCCCAACGTCGCCGGCCAGGTTCTCCGGCGATGCTTCAACGATGGTGCCCC-AGCAA
779 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGA-CGA
* *
4891604 AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATTTGCTG-TCGCAA-CC-C--
843 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT-GCAACCCTCGG
4891657 T-C-G---G----T---CT-GG--T----T-CG-AT-CTTAGACTGGGAATGAACTCCGTATGCC
1 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
*
4891700 TAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
66 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * *
4891765 TGGATCGGCCGGGTCCCCCTCTACGTGCTACTGATCCTGCT-ACTGCAACCCTCAGTCTGGTCTG
131 GGGATCGGCTGGGTCCCCCTCTACGTGCTACTGATCCTGCTGTC-GCAACCCTCAGTTTGGTCTG
* * * * * * *
4891829 ATCTTAGACTGGG-ATGAGC-AC-TACGCC--GGCCAGA--AACG-AGCGAGCGGGCCGGCAGG-
195 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA-ACCAACGAAACGAGCGGGCGGGCGGGC
* * * * *
4891885 TGAGCACTACGCCGGCCAGAAAGATGGGAAGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
259 GGA-CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
4891950 TTAGGCACATCTTTATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGGAAATTCATACAATGG
323 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
** * * * *
4892015 TCTGTTAAGCCTTCACATGAAGTTTCATGGCAAGACAACTCGTTTTTTATTTTTCACGATTTTTA
388 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* *
4892080 AAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT-GGAAGGACTTTTGGCCCCAAACTTGGTA
453 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
4892144 GACGTGATCCTTGCATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTC-AAAGTCTACA
518 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAA-TGTACA
*
4892208 AGATTTTGTGACCATTT-AAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTA-TGGCTAGCAA
582 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC-AGCAA
* * *
4892271 ACCTGTAAAATCTTAACTACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
646 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * **
4892336 GCCAATATAAGGGCCAAGCACCAGCACCCATTGCACATCATGTGCGCACACCCCCAAGCCCCCCC
711 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
* *
4892401 GATCGTCGGAACCCCAATGCGGCCGGTCAAGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGAC
776 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGAC
* * * * *
4892466 GAAGAAAAATGTGGCACCAGCACATGCCCGAGCTCAACATGTGCTACCGCAACCCTCGG
841 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGG
* * * *
4892525 TTCGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAGTGAACTCCGTATGCC
1 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* ** *
4892590 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCTAGCCAGAGGGACGGGATGCGCAAGCCG
66 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * **** * **
4892655 GGGATCGACTGGGTGCCCCTCTACGTGCTGCTGATCCTGCTTTTATGACCCTCAATCCGGTCTGA
131 GGGATCGGCTGGGTCCCCCTCTACGTGCTACTGATCCTGCTGTCGCAACCCTCAGTTTGGTCTGA
* *
4892720 TCTGAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGAGCGGGCGGGCGG
196 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGCGG
* * *
4892785 ACCGGCACTACGCCGACCTGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGG
261 A----CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
4892850 TTTAGGCACATCTTCATATTGCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
322 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
**
4892915 GTCCCCAAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
387 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
4892980 GAAACTTTTTAGGGTTCGGGATTTTTTAAAATTTTTTTGGATGGAGTTTTGGCCCCAAACCTGGT
452 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
4893045 AGACGTTATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
517 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACA
* * * * *
4893110 AGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGGCACTTTAGTAGATACTGGCAGCAAA
582 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
4893175 CCTGTAAAATCTCAAATGCTCTTCT-AGGGGGTGTGAGTTCTCGAGGTTTGATGTGGGATAGGGG
647 CCTGTAAAATCTCAAATGCTCTT-TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
4893239 GCCAATATAAGGGCCAAGTACCAGCAGCCATCGCATATCATGTGCGCACACCCCCCGGCCCCCCC
711 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
* *
4893304 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGAC
776 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGAC
* * * *
4893369 GAAGAAAAATACGGCACCAGTACATTCCAGAGCCCAGCATGTGCTGCTGCAACCCTCGG
841 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGG
* * * * *
4893428 TCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAGTGAACTTCGTACGCC
1 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* *
4893493 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGACGGGATGCGCAAGCCA
66 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * *
4893558 GGGATCGGCTGGGTCCCCCTCTGCATGCTACCGATCCTGCTGTCGCAACCCTCGGTTTGGTCTGA
131 GGGATCGGCTGGGTCCCCCTCTACGTGCTACTGATCCTGCTGTCGCAACCCTCAGTTTGGTCTGA
* * *
4893623 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGGAACGAGTGGGCGGGCGGGCGG
196 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGCGG
* * * *
4893688 ATACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTA
261 ACACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
4893753 GGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
326 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
**
4893818 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
391 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * * * *
4893883 CTTTTTACGGTTTGGGATTTTTCAAAATTTTTTCGGATGGAGTTTTAGACCCAAACTTGGCAGAT
456 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA-
* *
4893948 C-TGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAATGTATAAGA
520 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGA
* * * *
4894012 TTTTGTAACCATTTGAAAAAAATGTCCCCATTTAAGACACTTTAATGGCTACTCGCAGCAAACCT
585 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
4894077 ATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA
650 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
4894142 ATATAAGGGCCAAGTACCAGCACCCATCGGACATCATGTGCCCACACCCCCCTCGGCCCCCCCGA
715 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCCCCCCGA
* * * ** * **
4894207 TCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCCGGTGATGGTGCCCTGGTGA
778 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGA
* * * *
4894272 AGAAAAATGCGGCACCAGCACATGCCCGACCCCAGTATGTGCTG-TCGCAACCTTCGA
843 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT-GCAACCCTCGG
* *
4894329 TCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
1 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* ** * * * *
4894394 TAAGTCAACCCATGAAATAAGCGTACGGGAGCTCAGCCAGCCAGAGGGGCGGGATGCACAAGCCG
66 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * ** * *
4894459 GGGATCAG-TCGGGTCCCTCTCTGTGTGCTACTGATCCTGCT-ACTGCAA--CTCAGTTTGGTCC
131 GGGATCGGCT-GGGTCCCCCTCTACGTGCTACTGATCCTGCTGTC-GCAACCCTCAGTTTGGTCT
* *
4894520 GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGAGC
194 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACG-A---GCGGGC--G-
* * *
4894585 GGTCGGGCCGG-CACTACGTCGGCCAAAGAGACGGGATGAGCAAGCCGTGGATCGATAGGGTGGT
252 GG-CGGG-CGGACACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * * *
4894649 AGGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCAATGCCATTTTTCTGGCTTGTTAATTCA
315 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
4894714 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCAC
380 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * *
4894779 GATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTCTTTCAGAAGGAGTTTTGGCCCCAA
445 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
*
4894844 ACTTGGTAGACATGATCCTCT-TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
510 ACTTGGTAGACGTGATCCT-TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
*
4894908 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
574 AATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * *
4894973 GCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTGTTGAGGTTTGATGAGGG
639 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
4895038 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCCACATCATGTGCGCACACCCCCCGA
704 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* ** *
4895103 CCCCCCCGATCGTCGGAAACCCAATTTCG-C-G---GG---TCAGGT--T-CTCCGACGATGGTG
769 CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTG
* * * ** *
4895157 CGCCGGCGAAGAAAAATGTGGCACC-GACACATGCCCGATTCCAGCATGTGCCGCTGCAACCCTC
834 CCCCGACGAAGAAAAATGCGGCACCAG-CACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTC
4895221 GG
898 GG
* * * *
4895223 TCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGAATGCACTCCGTATGCC
1 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * * * *
4895288 TAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGACCACAGGGGTGGGATGTGTATGCCG
66 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * *
4895353 GGGATCAGCTGGGTCCCCCTCTACGTGCT-GTCGATCCTGCTGCCACAACCCTCA-TTCTGGTCT
131 GGGATCGGCTGGGTCCCCCTCTACGTGCTACT-GATCCTGCTGTCGCAACCCTCAGTT-TGGTCT
* * * * * * *
4895416 GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAATCGACGAAACAAGCTGGTGGGC---A
194 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGC
* *
4895478 GG-CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTT
259 GGACACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
4895542 TAGGCACATCTTCATATCTCTGCATGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGT
324 TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
4895607 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTTA
389 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * *
4895672 AACTTTTTACAGTTCGGGATTTTTTTAAATTTTTTCAGAAGGAGTTTCGGCCCCAAACTTGGTAG
454 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
4895737 ACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTC-AAAGCGTACAA
519 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAA-TGTACAA
* * *
4895801 GATTTTGTGACCAATTGAAAAAAGTGTCCCCATTTTAGATACTTTAATGGCTACTGGCAGCAAAC
583 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
4895866 CTGTAAAATCTCAACTACTCTTTAAGGGGGTTTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
648 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
4895931 CAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCTCGAG-CCCCCC
713 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CG-GCCCCCCC
* *
4895995 GATCGTC-GAA-CCCAATGCGGCCGGTCAAGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGAC
776 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGAC
* * * * * * *
4896058 GAAGAAAAATGTGGCACCAGCACATGCCCGAGCTCAACATGTGCTACCGCAGCCCTCAG
841 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGG
* * * *
4896117 TTCGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAGTGAACTCCGTATGCC
1 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* ** *
4896182 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCTAGCCAGAGGGACGGGATGCGCAAGCCG
66 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * **** * **
4896247 GGGATCGACTGGGTGCCCCTCTACGTGCTGCTGATCCTGCTTTTATGACCCTCAATCCGGTCTGA
131 GGGATCGGCTGGGTCCCCCTCTACGTGCTACTGATCCTGCTGTCGCAACCCTCAGTTTGGTCTGA
* *
4896312 TCTGAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGAGCGGGCGGGCGG
196 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGCGG
4896377 A
261 A
4896378 TTTGTGCGCA
Statistics
Matches: 4135, Mismatches: 477, Indels: 206
0.86 0.10 0.04
Matches are distributed among these distances:
859 9 0.00
860 6 0.00
861 6 0.00
862 1 0.00
863 11 0.00
864 233 0.06
865 143 0.03
866 328 0.08
867 1 0.00
868 1 0.00
869 1 0.00
871 1 0.00
873 3 0.00
874 2 0.00
877 2 0.00
880 1 0.00
881 3 0.00
883 11 0.00
884 472 0.11
885 17 0.00
886 1 0.00
887 1 0.00
888 4 0.00
889 4 0.00
890 151 0.04
891 10 0.00
892 5 0.00
893 8 0.00
894 492 0.12
895 14 0.00
896 61 0.01
897 19 0.00
898 3 0.00
899 511 0.12
900 12 0.00
901 475 0.11
902 96 0.02
903 505 0.12
904 6 0.00
905 28 0.01
906 8 0.00
907 465 0.11
908 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (899 bp):
TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
GGGATCGGCTGGGTCCCCCTCTACGTGCTACTGATCCTGCTGTCGCAACCCTCAGTTTGGTCTGA
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGCGG
ACACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGA
AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGG
Found at i:4894376 original size:26 final size:26
Alignment explanation
Indices: 4894340--4894392 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4894330 CCAGTCCGAT
*
4894340 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4894366 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4894392 C
1 C
4894393 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4895263 original size:26 final size:26
Alignment explanation
Indices: 4895234--4895286 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4895224 CTGGTCCGAT
* *
4895234 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
4895260 CTTAGACTAGGAATGCACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4895286 C
1 C
4895287 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4896157 original size:26 final size:26
Alignment explanation
Indices: 4896128--4896180 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4896118 TCGATCCGAT
*
4896128 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4896154 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4896180 C
1 C
4896181 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4896578 original size:26 final size:26
Alignment explanation
Indices: 4896541--4896593 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
4896531 CTGGTCCAAT
*
4896541 CTTAGATGGGGAATGAGCTCCGTATG
1 CTTAGATGGGGAATGAACTCCGTATG
4896567 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGA-TGGGGAATGAACTCCGTATG
4896593 C
1 C
4896594 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGATGGGGAATGAACTCCGTATG
Found at i:4897698 original size:26 final size:26
Alignment explanation
Indices: 4897669--4897745 Score: 136
Period size: 26 Copynumber: 3.0 Consensus size: 26
4897659 CCGGTCCGAT
*
4897669 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4897695 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4897721 CTTAGACTGAGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
4897746 CCCTAAGTCA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4898619 original size:26 final size:26
Alignment explanation
Indices: 4898583--4898635 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4898573 CTGGTCCTAT
4898583 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
4898609 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
4898635 C
1 C
4898636 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:4900393 original size:26 final size:26
Alignment explanation
Indices: 4900364--4900416 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
4900354 CTGGTCTGAT
4900364 CTTAGACTGGGTA-TGAACTCTGTATG
1 CTTAGACTGGG-AGTGAACTCTGTATG
4900390 CTTAGACTGGGAGTGAACTCTGTATG
1 CTTAGACTGGGAGTGAACTCTGTATG
4900416 C
1 C
4900417 CCAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAGTGAACTCTGTATG
Found at i:4900891 original size:899 final size:899
Alignment explanation
Indices: 4897695--4903366 Score: 7495
Period size: 880 Copynumber: 6.4 Consensus size: 899
4897685 ACTCCGTATG
* * *
4897695 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATCCCTAAGTCAGCCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * *
4897760 ATGAAATGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGACGCGTAAGTCGGGGATCGATCG
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * * * *
4897825 GGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAA-CCTCAGCCCGATCTGATCTTAGACTGG
131 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGG
* * * * * * *
4897889 GAATAAACTCCGTATACCTAAGCCAACCGACGAAACGAGCGTGCGGGCGGGCGGGCAGTACGTCG
196 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCAGGCGGGCGGGCACTACGCCG
* *
4897954 GCCAGA-ATGACGGGATGAGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATT
261 GCCAGAGA-GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
*
4898018 CATATTTCTGCGCT-CCAATGCCATTTTTAAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
325 CATATTTCTGCG-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * **
4898082 TCACATTAAGTTTCATGGTGAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCG
389 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCG
* * * *
4898147 GTTCGAGATTTTTTAAAATTCTTTCGGAAGGAGTTTTGGCCCCAAACTAGGTAGACGTGCTCATT
454 GTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* *
4898212 GTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCACAGTGTACAAGATTTTGTGACC
519 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACC
*
4898277 ATTTGAAAAAAGTGTCCCCA-TTCAAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCT
584 ATTTGAAAAAAGTGTCCCCATTTCAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* *
4898341 CAAATGCTCTTTAAGAGGGTGTGA-TATCTTGAGGTTTGATGAGGGATAAGGGGCCAATATAAGG
649 CAAATGCTCTTTAAGGGGGTGTGAGT-TCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGG
* * * *
4898405 GCCTAGTACCAGCACTCATTGCACATCATGTGTGCACACCCCCCTCGGCCCCCCGATCGCCGGAA
713 GCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA-CCCCC-CGGCCCCCCGATCGTCGGAA
* * ** *
4898470 CCCCAATGCTGTCGGTCAGGTTCT-C--C---G----G-CGATGGTGCACCGATAAAGAAAAATA
776 CCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG
*
4898524 CGGCACCAACACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTC-AGTCTGGTCCT-AT
841 CGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGA-TCTGGT-CTGAT
*
4898583 CTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
** * * * * *
4898648 ATAAAACGAGCGTGCGAGTGCTCAGTCGGCCAGAGGGGAGGGATGCGCAAGCCGGGGATCGGTCG
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * * * ** * * *
4898713 GGTCCCCCTCTGCGTGCTGTCGATCTTGTTGCCACAA--CTCAATTTGGTTTGATGTTAGACTGG
131 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGG
* *
4898776 GAATGAACTTCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCCGACGGGCGGGCGGGCACCAC
196 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGG-C-A--GGCGGGCGGGCACTAC
** * *
4898841 GTTGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATAT
257 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
4898906 CTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
322 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
4898971 CTTCACGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTG
387 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTG
* * * * *
4899036 TGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCC
452 CGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
*
4899101 TTGTATTTTTGTTGGCATGCACAAAAAAATTCATCTAAAAACTCAAAGTGTACAAGATTTTGTGA
517 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGA
* *
4899166 CCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATTGCTACTGGCAGCAAACCTATAAAAT
582 CCATTTGAAAAAAGTGTCCCCATTTCAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * * *
4899230 CTCAAATGCTCTCTAAGGGGGTGTGAGTTCTCAAGCTTTGATGAGGGATAGGGGGCCAATATAAG
647 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAG
4899295 GGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCGATCGTCGGAAC
712 GGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCGATCGTCGGAAC
* *
4899360 CCCAATGCCGTCAGTCAGGTTCTCCGGCGATGCT----C-----T-----GACGAACAAAAATGC
777 CCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC
* ** * * *
4899411 GGCACCAGCACATGCTTGAGCCCAGCATGTGCTGCAACAACCCTTGGTCTGGTCCGAT
842 GGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCTGAT
* * * *
4899469 CTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGGAATGAACTCCATATCCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* ***** * * *
4899534 ACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGATAAAAGGGATACGCAAGCTGGGGATCGGTCG
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * * * *
4899599 GGTCCCCCTCTGCGTGCTACCGATCCTACTACCGTAACCCTCGATCTGGTCTGATCTTAGACTGG
131 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGG
* * *
4899664 CAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGC--G--GGCGGGCGGGCACTACGCCG
196 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCAGGCGGGCGGGCACTACGCCG
* * * * *
4899725 ACCAGAAAGACGGAATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATATTC
261 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * * *
4899790 ATATTTCTGCATGCCAATGACATTTTTATGGCTTCTAAATTCATACAATGGTCCTTTAAGCCTTC
326 ATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
4899855 ACATGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGT
391 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGT
* * * ** * * *
4899920 TTGGGATTTTTTAAAATTCTTTCGGAAGGAGTTTTGGTGCCAAACTAGGTAGACGTGCTCATTGT
456 TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * * **
4899985 ATTTTTGTTGGCGTGCACAAAAAAATTTAACTAAAAACTCGTAGTGTACAAGATTTTGTGACCAT
521 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCAT
4900050 TTGAAAAAAGTGTCCCCA-TTCAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
586 TTGAAAAAAGTGTCCCCATTTCAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
*
4900114 AATGCTCTTTAAGGGGGTGTGAGATCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCC
651 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCC
* * * * * * *
4900179 AAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCCCCCCGGTTGCCGTAACCCT
716 AAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCC
* **
4900244 AATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTAGC
780 AATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
4900309 ACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCTGAT
845 ACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCTGAT
* * * * *
4900364 CTTAGACTGGGTATGAACTCTGTATGCTTAGACTGGGAGTGAACTCTGTATGCCCAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * *
4900429 ATGAAACGAGCGTGCGGGTGCTCAGCCAGCCAGAGAGGCGGGATGCGCAAGCCGGGGATCGA-CT
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-
* * * * *
4900493 GGGTCCCCCTCTGTGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGCCCT-ATCTTA-AAT
130 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGG-TCTGATCTTAGACT
* * *
4900556 AGGGAATGAACTCTGTATGCCTAAGGCAACCGATGAAATGAGCGGGCAGGCGGGCGGGCACTACG
194 -GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCAGGCGGGCGGGCACTACG
* *
4900621 CCGGCCAGAGAGACGCGATGCGCAAGCCGTGGATCGATAGGGTTGTAGGTGGGTTTAGGCACATC
258 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* ** * * * * *
4900686 TTCAAATTTCTATGTGTCGATGCCATTTTTATGGCTTGTAAATTCGTACAATGATCCCTTAATCC
323 TTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * *
4900751 TTCACGTGAAGTTTCATGGCAAGTCGACTCGTTTTCTATTTTTCACGATTTTTGACACTTTTTAC
388 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGC
* *
4900816 GGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACTTGATCCT
453 GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * *
4900881 TGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACAACATTTTCTGAC
518 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGAC
4900946 CATTTGAAAAAAGTGTCCCCATTTCAA-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
583 CATTTGAAAAAAGTGTCCCCATTTCAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
4901010 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
648 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGG
* * * *
4901075 GCCAAGTACCGGCACCAATCGCACATCATGAGCGCACACCCACCCTGGCCCCCCCGATCGTCGGA
713 GCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCC-CCC-GG-CCCCCCGATCGTCGGA
* * * * *
4901140 ACCCTAACGCTGTCGGTCAGGTTCTCCGGCAATGCTCCGACGATGGTGCCCCGATGAAGAAAAAT
775 ACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* * * * * ** *
4901205 GTGGCCCCAGCACATGCCCGAGCCCAGCATGTGCGGCCACAACCCTCGATCTAATCTAAT
840 GCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCTGAT
4901265 CTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * *
4901329 CACGAAACAAGCATGCGGGCGCTCAGCCGGTCAGAGGGACGGGATGCGCAAGTCGGGGATCGATC
65 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC
* * * ** * * *
4901394 GGGTCCCCCTCTGCATGCTGCCGATCCTGTTACCATAACCCTTGGTCTGGTCCGATCTTAGATTG
130 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTG
* * * *
4901459 GGAATGAACTTCGTATGCCTAAGCCAACCGATGAAATGAGCGGGCGGGCGGGCAGGCGGGCACTG
195 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCAGGC--G--GGCGGGCACTA
* *
4901524 CTCCAGCCAGAGAGAC-GGATGCGCAAGCCGTGGATCGAT-GGGTGGTAGGTGGGTTTAGGCACA
256 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * * *
4901587 TCTACATGTTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAG
321 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* ** *
4901652 CCTTCACGTGAAGTTTCATGGGAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAATTTTT
386 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
** * * * * *
4901717 GTAGTTTGAGATTTTTTACAATTTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTAAT
451 GCGGTTCGAGATTTTTTA-AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
** *
4901782 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAATATTTTGT
515 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
* *
4901847 GACCATTTGAAAAAAGTGTCCCCATTT-TAGACACTTTAATGGCTACTGGCAGCAAACCTATAAA
580 GACCATTTGAAAAAAGTGTCCCCATTTCAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
4901911 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGCGGCCAATAT
645 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGG-GGCCAATAT
* *
4901975 AAGGGCCAAGTACCAGCACCCATCGTACATCATGTGTGCACACCCCCTGGCCCCCCGGATCGTCG
709 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCC-GATCGTCG
* * *
4902040 GAACCCCAATGTCGCCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGACGAA-AAAA
773 GAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
* *
4902104 ATACGGCACCAGCACATGCCGGAGCCCAGCATGTGCTGCCGCAA-CC-C--TC--G---G--
838 ATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCTGAT
4902155 --T---C------TG-A-TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * *
4902205 ACGAAACGAGCTTGCGAGCACTCAGCCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGATCG
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * * * * * * * *
4902270 GGTCCCGCTATACGTGCTACCGATCCCG-TGTCGCAACCCTCGGTCCGCTCTGATCTTAGACTAG
131 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGG
* * * *
4902334 GAATTAACTCCATATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCAGGCGGGTCGGG-ACTA
196 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGA----GCGGGCAGGCGGG-CGGGCACTA
*
4902398 CACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
256 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * *
4902463 TCTTCATATTTCTGCATGCCAGTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTGAAG
321 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* *
4902528 CCTTCACGTGGAGGTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
386 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
* * *
4902593 GCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAG-TTTGCACCCCAAACTTGGTAGACGTGAT
451 GCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG-GCCCCAAACTTGGTAGACGTGAT
* *
4902657 CCTTATATTTTTTTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
515 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
* *
4902721 GACCTTTTGAAAAAAGTGTCCCCATTTCAA-ACACTTTAATGGCTACTAGCAGCAAACCTGTAAA
580 GACCATTTGAAAAAAGTGTCCCCATTTCAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * * *
4902785 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTTGAGGTTTGATGAGGGATAGGGGGCCAAAATA
645 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATA
*
4902850 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCGCCCCGGCCCCCCTGATCATC
710 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA-CC-CCCCGGCCCCCC-GATCGTC
* * * * * *
4902915 GGAACCCCAATGCTGCCGGTCAGGTTCTCCGACAATGCTCCGGCGATGGTGCCCCGGCGAAGAAA
772 GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAA
* * ** * * *
4902980 AATGCGGTACCAACACATGCCCAAGCCCAGCATGTGCTGCCGTAACCCTAGGTCTGGTCTGAT
837 AATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCTGAT
*
4903043 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * ** * *
4903108 ACGAAACGAACGTGCGAGCGCTCAATCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATC-AGCC
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-TC
* * * * * * * * *
4903172 AGGT-CCCCTCTGTGTGCTACCAATCTTGCTGCCGTAACCTTCGGTTTGGTCCGATCTTAGACTG
130 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTG
* * *
4903236 GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGC-GG-A--CGGGCAGGCACTACACC
195 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCAGGCGGGCGGGCACTACGCC
* * * * *
4903297 GGCCAGAGAGACGGGATGCGCAAGCCGTGGACCGATATGCTGGTAGGTGGGTTTAGTCACATCAT
260 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
4903362 CATAT
325 CATAT
4903367 GTGACCATTT
Statistics
Matches: 4198, Mismatches: 485, Indels: 195
0.86 0.10 0.04
Matches are distributed among these distances:
874 276 0.07
875 205 0.05
876 229 0.05
877 46 0.01
878 12 0.00
879 5 0.00
880 468 0.11
881 48 0.01
883 1 0.00
885 3 0.00
886 205 0.05
887 57 0.01
888 208 0.05
889 41 0.01
890 9 0.00
891 463 0.11
892 6 0.00
893 1 0.00
894 6 0.00
895 336 0.08
896 3 0.00
897 4 0.00
898 2 0.00
899 462 0.11
900 12 0.00
901 385 0.09
902 86 0.02
903 311 0.07
904 284 0.07
905 24 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (899 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGG
GAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCAGGCGGGCGGGCACTACGCCG
GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGT
TCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCAT
TTGAAAAAAGTGTCCCCATTTCAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCC
AAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCA
ATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCA
CCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCTGAT
Found at i:4901303 original size:26 final size:26
Alignment explanation
Indices: 4901265--4901317 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
4901255 CTAATCTAAT
4901265 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4901291 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
4901317 C
1 C
4901318 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4903079 original size:26 final size:26
Alignment explanation
Indices: 4903043--4903095 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4903033 CTGGTCTGAT
4903043 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4903069 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4903095 C
1 C
4903096 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4903721 original size:26 final size:26
Alignment explanation
Indices: 4903690--4903742 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4903680 CTGGTATGAT
4903690 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4903716 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4903742 C
1 C
4903743 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4904111 original size:647 final size:646
Alignment explanation
Indices: 4902718--4904411 Score: 2836
Period size: 648 Copynumber: 2.6 Consensus size: 646
4902708 TACAAGATTT
*
4902718 TGTGACCTTTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTAGCAGCAAACCTGTA
1 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTAGCAGCAAACCTGTA
*
4902783 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTTGAGGTTTGATGAGGGATAGGGGGCCAAAA
66 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAAA
4902848 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCGCCCCGGCCCCCCTGATCA
131 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCC-CCCCGGCCCCCC-GATCA
*
4902913 -TCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGACAATGCTCCGGCGATGGTGCCCCGGCGAAG
194 CT-GGAACCCCAATGCTGCCGGTCAGGTTCTCCGACAATGCTCCGGCGATGGTGCCCCGACGAAG
* *
4902977 AAAAATGCGGTACCAACACATGCCCAAGCCCAGCATGTGCTGCCGTAACCCTAGGTCTGGTCTGA
258 AAAAATGCGGTACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTAGGTCTGGTCTGA
4903042 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
323 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
* *
4903107 CACGAAACGAACGTGCGAGCGCTCAATCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCAGCC
388 CACGAAACGAACGTGCGAGCACTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCAGCC
* *
4903172 AGGTCCCCTCTGTGTGCTACCAATCTTGCTGCCGTAACCTTCGGTTTGGTCCGATCTTAGACTGG
453 AGGTCCCCTCTATGTGCTACCAATCTTGCTGCCGTAACCTTCGGTCTGGTCCGATCTTAGACTGG
*
4903237 GAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGACGGGCAGGCACTACACCGGCCA
518 GAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGACGGGCAGGCACTACACCAGCCA
*
4903302 GAGAGACGGGATGCGCAAGCCGTGGACCGATATGCTGGTAGGTGGGTTTAGTCACATCATCATA
583 GAGAGACGGGATGCACAAGCCGTGGACCGATATGCTGGTAGGTGGGTTTAGTCACATCATCATA
*
4903366 TGTGACCATTTGAAAAAAGTGCCCCCATTTCAAACACTTTAATGGCTACTAGCAGCAAACCTGTA
1 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTAGCAGCAAACCTGTA
*
4903431 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAAAA
66 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAAA
* *
4903496 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCATCCCGACCCCCCGATCAC
131 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCC-CCCCGGCCCCCCGATCAC
* * *
4903561 TGGAACCCCAATACTGCCGGTCAGGTTCTCCGACAATGCTCCGGTGATGGTGCCCCGATGAAGAA
195 TGGAACCCCAATGCTGCCGGTCAGGTTCTCCGACAATGCTCCGGCGATGGTGCCCCGACGAAGAA
* *
4903626 AAATACGGTACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTAGGTCTGGTATGATC
260 AAATGCGGTACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTAGGTCTGGTCTGATC
4903691 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCA
325 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCA
* *
4903756 CGAAACGAACGTGCGAGCACTCAACCGGCCAGAGGGGCGGGATGCACAAGGCGGGGATCAGCCGG
390 CGAAACGAACGTGCGAGCACTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCAGCCAG
* *
4903821 GTCCCCCTCTATGTGCT-GCAGATCTTGCTGCCGTAACTTTCGGTCTGGTCCGATCTTAGACTGG
455 GT-CCCCTCTATGTGCTACCA-ATCTTGCTGCCGTAACCTTCGGTCTGGTCCGATCTTAGACTGG
* *
4903885 GAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGGCTGGCAGGCACTACACCAGCCA
518 GAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGACGGGCAGGCACTACACCAGCCA
* *
4903950 GAGAGACGGGATGCACAAGCCGTGGATCGATATGCTGGTAGGTGGGTTTGGTCACATCATCATA
583 GAGAGACGGGATGCACAAGCCGTGGACCGATATGCTGGTAGGTGGGTTTAGTCACATCATCATA
*
4904014 TGTGACCATTTG-AAAAAGTGTCCCCATTTCAAACACTTTAATGCCTACTAGCAGCAAACCTGTA
1 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTAGCAGCAAACCTGTA
**
4904078 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATG
66 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAAA
* * * *
4904143 TAAGGGCCAAGTACCAGTACCCATCGTACATCATGTGCGCACGCACCCCCCCGGCCCCCCGATCG
131 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCA--CACCCCCCCGGCCCCCCGATCA
* * * * * * *
4904208 CTGTAACCCCAATGCCGCCGGTCAGGTTTTCCGACGATGCTCTGACGATGGTGCCCCAACGAAGA
194 CTGGAACCCCAATGCTGCCGGTCAGGTTCTCCGACAATGCTCCGGCGATGGTGCCCCGACGAAGA
** * * * *
4904273 AAAATGCGACACCAGCACATGCCCGAGCTCAGCATGTGCTGCCACAACCCTCGGTCTGGTCTGAT
259 AAAATGCGGTACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTAGGTCTGGTCTGAT
* *
4904338 CATAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
324 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCC
*
4904403 ATGAAACGA
389 ACGAAACGA
4904412 GCATGCGGGC
Statistics
Matches: 980, Mismatches: 61, Indels: 10
0.93 0.06 0.01
Matches are distributed among these distances:
647 406 0.41
648 569 0.58
649 5 0.01
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (646 bp):
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTAGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAAA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCCCCCGATCACT
GGAACCCCAATGCTGCCGGTCAGGTTCTCCGACAATGCTCCGGCGATGGTGCCCCGACGAAGAAA
AATGCGGTACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTAGGTCTGGTCTGATCT
TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAC
GAAACGAACGTGCGAGCACTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCAGCCAGG
TCCCCTCTATGTGCTACCAATCTTGCTGCCGTAACCTTCGGTCTGGTCCGATCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGACGGGCAGGCACTACACCAGCCAGAG
AGACGGGATGCACAAGCCGTGGACCGATATGCTGGTAGGTGGGTTTAGTCACATCATCATA
Found at i:4904376 original size:26 final size:26
Alignment explanation
Indices: 4904340--4904390 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
4904330 GGTCTGATCA
4904340 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
4904366 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
4904391 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:4905985 original size:26 final size:26
Alignment explanation
Indices: 4905949--4905998 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
4905939 TGGCTCAATG
* *
4905949 TTAGATTGGGAATGATCTCCGTATAC
1 TTAGACTGGGAATGACCTCCGTATAC
4905975 TTAGACTGGGAATGACCTCCGTAT
1 TTAGACTGGGAATGACCTCCGTAT
4905999 GCGGGCCAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (26 bp):
TTAGACTGGGAATGACCTCCGTATAC
Found at i:4907097 original size:26 final size:26
Alignment explanation
Indices: 4907061--4907113 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4907051 CCGGTTCGAT
*
4907061 CTTAGACTGGGAATGAACTGCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4907087 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4907113 C
1 C
4907114 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4908596 original size:25 final size:25
Alignment explanation
Indices: 4908568--4908617 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
4908558 GTCAGGTTCT
4908568 CCGGTGATGCTTCGGCGATGGTGCC
1 CCGGTGATGCTTCGGCGATGGTGCC
*
4908593 CCGGTGGTGCTTCGGCGATGGTGCC
1 CCGGTGATGCTTCGGCGATGGTGCC
4908618 GCGACGAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.06, C:0.28, G:0.42, T:0.24
Consensus pattern (25 bp):
CCGGTGATGCTTCGGCGATGGTGCC
Found at i:4908731 original size:26 final size:26
Alignment explanation
Indices: 4908693--4908745 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4908683 TTGGCCTGAT
4908693 CTTAGACTAGGAATGAACTCCCTATG
1 CTTAGACTAGGAATGAACTCCCTATG
* *
4908719 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCCTATG
4908745 C
1 C
4908746 CTAAGTCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCCTATG
Found at i:4909877 original size:26 final size:26
Alignment explanation
Indices: 4909829--4909878 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
4909819 TTTTCTATTT
* **
4909829 TTCATGATTTTTGAAAACTTTTTTGG
1 TTCAGGATTTTTGAAAAAATTTTTGG
*
4909855 TTCAGGATTTTTTAAAAAATTTTT
1 TTCAGGATTTTTGAAAAAATTTTT
4909879 CGAAAGGAGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.28, C:0.06, G:0.12, T:0.54
Consensus pattern (26 bp):
TTCAGGATTTTTGAAAAAATTTTTGG
Found at i:4910718 original size:720 final size:707
Alignment explanation
Indices: 4908858--4911043 Score: 2961
Period size: 704 Copynumber: 3.1 Consensus size: 707
4908848 CTGTTGTCGT
* * * *
4908858 AACCCTCTGTTCGGTCCGATCTGAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * * * *
4908923 CGAGCAAGCAGGCGGGCAGACGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGTCGTGGAT
66 CAATC--GC-GGCAGGCGGGCGGGCACTACGTCGGCCAAAGAGACGGGATGCGCAAGCCGTGGAT
* * *
4908988 CAATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTGCTGCGAGCCAATGCCATTTTTATGG
128 CAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
*
4909053 CTTGTAAATTCATACAATGGT-CTTTGAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATT
193 CTTGTAAATTCATACAATGGTCCCTT-AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATT
* *
4909117 TTCTATTTTTCATGATTTTTGAAACTTTTTAGGGTTCGAGATTTTGTAAAATTTTTTTGGAAGGA
257 TTCTATTTTTCATGATTTTTGAAACTTTTT-GGGTTCGAGATTTTTTAAAATATTTTTGGAAGGA
4909182 GTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
321 GTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTA-TTTTTTTGGCATGCAC-AAAAAATTCAG
*
4909247 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTT
384 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
4909312 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTCAAGGGTGTGTGAGTTCTCGAG
449 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
4909377 ATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
514 ATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * *
4909442 CACACCCCCC-AGCCCCCTATCATCGGAACCCCAATGCCGTCGGAT-AGGTTCTCCGACGATGCT
579 CACACCCCCCGACCCCCCGATCGTCGGAA-CCCAATG-CGCCGG-TCAGGTTCTCCGACGATGCT
* * * * **
4909505 GCGGCGATGG-GACCTCGGCGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCTTGTGCT
641 CCGACGATGGTG-CCTCGACGAAGAAAAATAC-GCACCAGCACATGCCTGAGCCCAGCAT-ACCT
*
4909569 GCCGT
703 GCCGC
*
4909574 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAGACCGACG--
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA-ACCGACGAA
*
4909637 A-AAT----G-A-GCGGGCGGGCACTACGTC-GCC-AAGAGACGGGATGCGCAAGCCGTGGATCG
65 ACAATCGCGGCAGGCGGGCGGGCACTACGTCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCA
* *
4909693 ATAGGGTGGTAGGTGGGTTTAGGCACATCTCCATATTTCTGCATGCCAATGCCATTTTTATGGCT
130 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
* * * * * *
4909758 TTTAAAATTCATATAATGGTCCCTTAAGCTTTCACGTGACGTTGCATGGCAAGACGACTCGTTTT
195 TGT-AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTT
* * *
4909823 CTATTTTTCATGATTTTTGAAAACTTTTTTGGTTC-AGGATTTTTTAAAAAATTTTTCGAAAGGA
259 CTATTTTTCATGATTTTTG-AAACTTTTTGGGTTCGA-GATTTTTTAAAATATTTTT-GGAAGGA
** * *
4909887 GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTGGCATGCACGAAAAAAATCAGG
321 GTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTGGCATGCAC-AAAAAATTCAGC
*
4909952 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTCAGACACTTT
385 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * *
4910017 AATGGCTACTGGCAGCAAACTTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGT
450 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGA
*
4910082 TTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
515 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* *
4910147 ACACCCCCTCCGACCCCCCCGATCGTCGGAACCCTAACGTCGCCGGTCAGGTTCTCCGGCGATGC
580 ACA-CCCC-CCGA-CCCCCCGATCGTCGGAACCC-AATG-CGCCGGTCAGGTTCTCCGACGATGC
* *
4910212 ACCGACGATGGTGCCTCGACGAAGAAAAATACGACACCAGCACATTTCC-GAGCCCAGCATACAC
640 TCCGACGATGGTGCCTCGACGAAGAAAAATACG-CACCAGCACA-TGCCTGAGCCCAGCATAC-C
4910276 TGCCGC
702 TGCCGC
* * * * * *
4910282 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATTAACTTCGTATGCCTAGGCCAACTGATGAAA
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * *
4910347 CAATCGGGCGGGCAGGCGGGCGGGCACTACGACGGCCAAAGAGACAGGATGCACAAGCCGTGGAT
66 CAATC--GC-GGCAGGCGGGCGGGCACTACGTCGGCCAAAGAGACGGGATGCGCAAGCCGTGGAT
* *
4910412 CAATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATGTTTCTGCGTGCCAATGCCATTTTTATGG
128 CAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
* * *
4910477 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAGGACAACTCATTT
193 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTT
** *
4910542 TCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATCTTTTTGGAAGGAG
258 TCTATTTTTCATGATTTTTGAAACTTTTTG-GGTTCGAGATTTTTTAAAATATTTTTGGAAGGAG
* * * *
4910607 TTTTGGCCCCAAACTAGGTAGATGTGATCCTTGTATTTTGGTTGGCATGCTCAAAAACTTTCAGC
322 TTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTT-TTTGGCATGCACAAAAA-ATTCAGC
*
4910672 TTAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
385 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
4910737 AATGGCTACTGGCAGCAAGCCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCCCGAGG
450 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGA
* * * * * **
4910801 TCTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTCCAGCACCCATCACACATAATATGCAT
515 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * *
4910866 TCACCCCCCG-CCCCCCGATCGTCGGAACCGCAATGCTACCGATCAGGTTCTTCGACGATGCTTC
580 ACACCCCCCGACCCCCCGATCGTCGGAACC-CAATGC-GCCGGTCAGGTTCTCCGACGATGCTCC
* * * ** * *
4910930 GACGATGGTGCCCCGACAAAGATAAATGTTGCACCAGCACATGCCTGAGCCCAGCATGTCCTGTC
643 GACGATGGTGCCTCGACGAAGAAAAAT-ACGCACCAGCACATGCCTGAGCCCAGCAT-ACCTGCC
4910995 GC
706 GC
* *
4910997 AACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGC
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
4911044 TTAGACTGGG
Statistics
Matches: 1297, Mismatches: 134, Indels: 79
0.86 0.09 0.05
Matches are distributed among these distances:
703 89 0.07
704 308 0.24
705 72 0.06
706 2 0.00
707 12 0.01
708 142 0.11
709 5 0.00
710 3 0.00
714 5 0.00
715 137 0.11
716 54 0.04
717 10 0.01
718 5 0.00
719 149 0.11
720 214 0.16
721 90 0.07
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (707 bp):
AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CAATCGCGGCAGGCGGGCGGGCACTACGTCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCAA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCT
ATTTTTCATGATTTTTGAAACTTTTTGGGTTCGAGATTTTTTAAAATATTTTTGGAAGGAGTTTT
GGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTGGCATGCACAAAAAATTCAGCTAAAAA
CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
CCCGACCCCCCGATCGTCGGAACCCAATGCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGG
TGCCTCGACGAAGAAAAATACGCACCAGCACATGCCTGAGCCCAGCATACCTGCCGC
Found at i:4911046 original size:26 final size:26
Alignment explanation
Indices: 4911017--4911069 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4911007 CCGATCCAAT
4911017 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4911043 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4911069 C
1 C
4911070 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4912167 original size:26 final size:26
Alignment explanation
Indices: 4912138--4912188 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
4912128 CCGATTCGAT
4912138 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4912164 CTTAGACTGGGAATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
4912189 CCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4913041 original size:26 final size:26
Alignment explanation
Indices: 4913012--4913064 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4913002 CCGATCCGAT
4913012 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4913038 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4913064 C
1 C
4913065 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4913947 original size:26 final size:26
Alignment explanation
Indices: 4913918--4913970 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4913908 CTGGTTCGAT
* *
4913918 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
4913944 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
4913970 C
1 C
4913971 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:4914848 original size:26 final size:26
Alignment explanation
Indices: 4914812--4914864 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4914802 CGAGTCTGAT
*
4914812 CTTAGACTGGGAATGAACTGCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4914838 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4914864 C
1 C
4914865 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4915763 original size:26 final size:26
Alignment explanation
Indices: 4915713--4915765 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
4915703 CTGGCCCGAT
*
4915713 CTTAGACTAGGAATGAGCTGCGTATG
1 CTTAGACTAGGAATGAACTGCGTATG
*
4915739 CTTAGACTGGGAATGAACT-CAGTATG
1 CTTAGACTAGGAATGAACTGC-GTATG
4915765 C
1 C
4915766 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTGCGTATG
Found at i:4918443 original size:26 final size:26
Alignment explanation
Indices: 4918407--4918459 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4918397 CGGGTCTGAT
*
4918407 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
4918433 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
4918459 C
1 C
4918460 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:4919098 original size:894 final size:895
Alignment explanation
Indices: 4912063--4920204 Score: 10741
Period size: 893 Copynumber: 9.1 Consensus size: 895
4912053 CGACGATGCT
* * * * * * *
4912063 CCGATGAAGAAAAATGTGACACCAGCACACGTCCAAGCCCAGCATGTGCTGCCGCAACCCTTGGT
1 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * * *
4912128 CCGATTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATCCCT
66 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * ** * * *
4912193 AAGTCAGCCCATGAAATGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGTGGGACACGTAAGTCGG
131 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGA
* ** ** * ** *
4912258 GGATC-GATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCAGCCCGGTCTGA
196 GGATCGGCT-GGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTTCGGTCCGA
* * * * *
4912322 TCTTAGATTGGGAATGAACTCTGTATTCCTATGCCAACCGACGAAATGAGCAGGCGGGCGGGCGG
260 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--CG-A-GCGGGCGGGCGG
* *
4912387 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTA
321 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
4912452 GGCACATCTTCATATTTCTGCA-TGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGT-
386 GGCACATCTTCATATTTCTGCAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * **
4912515 CCTTGAAGCCTTCACATGAAGTTTCATGGGAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
451 CCTT-AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAA
*
4912580 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTC-GAAGG-GCTTTTGGCCCCAAACTTGGT
515 AACTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTTTCGGAAGGAG-TTTTGGCCCCAAACTTGGT
* *
4912643 AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
578 AGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
4912708 AGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTATAATGGCTACTGGCAGCAAA
643 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * * *
4912773 CCTATAAAATCTCAAATGCCCTTTAAGGGGGTGTGATTTCTTGAGGTTTGATGAGGGTTAGGGGG
708 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
4912838 CCAATATAAGGGCCAAGAACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCTGCCCCCCG
773 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCCCCCG
*** *
4912903 ATCGTTGGAACCCCAATG-C-C--GTCA-G---T----C-A------G--G-T--T-CT
837 ATCACCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
* * * *
4912937 CCGACGAAGAAAAATGCGACACCAGCACATGCCCAAGCCCAGTATCTG-TGGCCGCAACCCTCGG
1 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-GCCGCAACCCTCGG
* * *
4913001 TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGTAATGAACTCCGTATGCC
65 TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * ** * *
4913066 TAAGTCAACCCACAAAATGAGCATGTAGGCGCTCAACCGGCCAAAAGGGCGGGATGCGCAAGCCG
130 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * ** * * *
4913131 AGGATCGGTTTGGGTCCCCCTCTGCATGCTGTCGATCTTGCTGCCGCAACCCTCGGTTCGGTCTG
195 AGGATCGG-CTGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTTCGGTCCG
* * *
4913196 ATCTTAGACTGGGAATTAACTTCGTATGCCTAAGCCAACCGAAGAAACGAGCGGGCGGGCGGCCG
259 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGC-G--G
* * * * *
4913261 AGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAGGTCGTGGATTGATAGGGTGGTAGGTTG
317 -GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * * *
4913326 GTTTAGGCACATCTTCATGTTTCTGCA-TGCCAATGCCATTTTAATGGCTTGTGAATTCATAGAA
381 GTTTAGGCACATCTTCATATTTCTGCAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * * *
4913390 TGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTCTATATTTTTCACGATTT
446 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TT
* ** * **
4913455 TTGAAAA-TTTTTATGGTTCGGGATTTTTTTAAAATTTTTTCGGAAGGGGTTTTGGCCTGAAACT
510 TTCAAAACTTTTTGCGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * * *
4913519 TGGTAGACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAAA-TCAGCCAAAAACTCGAAAT
574 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAAATTCAGCTAAAAACTCGAAGT
4913583 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
638 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * *
4913648 ACACACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA
703 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
4913713 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGTGCACACCCCCCCGGCC
768 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCC
*** * * * ** * **
4913778 CCCCTGATGGTCGGAACCCCAAT-CCTACCGGCCAGGTTCTCCTACGATGCTCCGGCGATGGCAC
832 CCCC-GATCACCGGAACCCCAATGCC-GCTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGC
4913842 C
895 C
** * * * * * * * * *
4913843 CCGAAAAAGAAAAATGTGGCACTAGCACATGCGCGAGCCGAGCATGTGCTACCGTAAACCTCAGA
1 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * *
4913908 CTGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGCAATGAACTCCGTATGCCT
66 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * *
4913973 AAGTCAACCCAGGAAACGAGGGTGCAGGTGCTCAGCCGGCCAGAGGGGCGAGATGCGCGAGCCGA
131 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGA
* * * * ** *
4914038 GGATCGACTGGGTCCCCTTCTGTGTGCTATCGATCCTGCTGCTGCAACCCTCGG-TCTGGTCCAA
196 GGATCGGCTGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTTC-GGTCCGA
* * * * * *
4914102 TCTAAGACTAGGAATCAACTCCGTACGCCTAAGCCAACCGACGAAATGAGTGGGCGGGCGGGCAC
260 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAC
* * * *
4914167 TACACCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGACATGGTGGTAGGTGGGTTTAGGCA
325 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
4914232 CATCTTCATATTTCTGCA-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATTGTCCCTT
390 CATCTTCATATTTCTGCAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
*
4914296 AAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTCAAAACTT
455 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTT
* *
4914361 TTTGCGTTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
520 TTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
*
4914426 ATCCTTTTATTTTTGTTGGCATG-AAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
585 ATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
4914490 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
650 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
4914555 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
715 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* *
4914620 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCGGCCCCCCGATCGCCT
780 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCCCCCGATCACCG
*
4914685 GAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCAGACGATGGTGCC
844 GAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
** * * * *
4914737 CCGGTGAAGAAAAATGCGGCACCAGGACATGCTCGAGCCTAGCATGTGCTGCCGTAACCCTCGGT
1 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * *
4914802 C-GAGTCTGATCTTAGACTGGGAATGAACTGCGTATGCTTAGACTGGGAATTAACTCCGTATGCC
66 CTG-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
4914866 TAAGTCAACCCATGGAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
130 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCG
** * ** * *
4914931 -GGCATCAACCGGGTCCCCCTCTGCGTGCTACCGATCCTATTGCCACAACCCTC-GATCTGATCC
195 AGG-ATCGGCTGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTTC-GGTCC
* * *
4914994 AATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGAGCGGGC
258 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-G-GCGGGC
* * * *
4915059 GGGAACTACGCCAGCCAGTGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
319 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
4915124 TAGGCACATCTTCATATTTCTTCA-TGCCAATGCCATTTTTATGGGTTGTAAATTCATACAATGG
384 TAGGCACATCTTCATATTTCTGCAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
4915188 TCCCTTAAGCCTACATGTGAAGTTTCATGACAAGACGACTCGTTTTCTATTTTTCATGATTTTCA
449 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCA
* * * **
4915253 AAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGAAAGTAGTTTCAGCCCCAAACTTGGTA
514 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
*
4915318 GACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAAA-TCAGGTAAAAACTCGAAGTGTACA
579 GACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
4915382 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTACAGACACTTTAATTGCTACTGGCAGCAAA
643 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
4915447 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
708 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
4915512 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCTCCGACCCCCC
773 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCC-CCG-GCCCCC
* * * *
4915577 CGATCACCGGAACCCCAATG-CGACCGGTCAGGTTCTCCGACGATGCTTCGGCGATGGTGCC
835 CGATCACCGGAACCCCAATGCCG-CTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
* * ** *
4915638 CCGACGAAGAAAAATGCAGCACTAGCACATGCCCGAGCCGGGCATGTGCTGCTGCAACCCTCGGT
1 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * * *
4915703 CTGGCCCGATCTTAGACTAGGAATGAGCTGCGTATGCTTAGACTGGGAATGAACTCAGTATGCCT
66 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
4915768 AAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCTGGATGCGCAAGCCGA
131 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGA
* * * ** * * * * * *
4915833 GGATCGGTTGGGTTCCCCTCTGCATGCTGTCGATCTTGCTGTCATAACCCTCTGTTCAGTCCAAT
196 GGATCGGCTGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTTCGGTCCGAT
* *
4915898 CTGAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCAAGCGGGCGGGCGGA
261 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G--AGCGGGC--G-GG-
* * * *
4915963 CGGGCACTACGTCGGCCAGAGAGATGGGATGCACAAGCCGTGGATCAATAGGGTGGTAGGTGGGT
318 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
4916028 TTAGGTACATCTTCAT-TTTGCTGC-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
383 TTAGGCACATCTTCATATTT-CTGCAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* **
4916091 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTT
447 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
** * *
4916156 TGAAACTTTTTAG-GGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTG
512 CAAAACTTTTT-GCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * * *
4916220 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAACATTCAGCTAAAAATTCGAAGTGTA
576 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTA
4916285 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
641 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
4916350 AACCTGTAAAATCTCAAATGCTCTTCAAGGGCGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
706 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
4916415 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
771 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCC
** * **
4916480 TCGATCGTCGGAACCCCAATGCCG-TCGGACAGGTTCAACGGCGATGCTCCGACGATGGTGCC
835 -CGATCACCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
* *
4916542 CCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
1 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * * * *
4916607 CCGATCCGATCTTAGACTGGGAATGAACTCTGTACGCTTAGACTAGGAATAAACTCCGTATGCCT
66 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
** ** * * * *
4916672 AAGTCAACCCACGAAATAAGCGTGCGGGCGCTTGACCGACCA-AAGGGTGGGATGCGCATGCCGA
131 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGA
* * * * *
4916736 GGATC-GATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCAGCCACAACCATCGGTTCAGTCTGA
196 GGATCGGCT-GGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTTCGGTCCGA
* *
4916800 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAAGAGCGGGCGGGCGGGCGG
260 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC--
* * * *
4916865 GC-ACGACACAGGCCAGAGAGGCGGGATGCGCAAGCCGTGTATCGATAGGGTGGTTGGTGGGTTT
323 ACTACG-C-C-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * *
4916929 AGGCACATCTTCATATTGCTAC-GTGCCAATGCCCTTTTTATGGCATGTAAATTCATACAATGGT
385 AGGCACATCTTCATATTTCTGCAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
4916993 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCCA
450 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAA
** *
4917058 AACTTTTTGCGGTTCGAAATTTTTTAAAATTTTTTCGGAAGGGGTTTTGGCCCCAAACTTGGTAG
515 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
4917123 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG-TTAAAACTCGAAGTGTACAAG
580 ACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
4917187 ATTTTGTGACCATTTGAAAAAAATGTCTCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACC
645 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
4917252 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
710 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * **
4917317 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGGGTGCACACCCCCCGGCCCTATCGAT
775 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC-CCCGAT
* * * *
4917382 AACCGAAACCTCAATGCCG-TCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCC
839 CACCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
** * * * *
4917439 TTGGCGAGGAAAAATGCGGCACAAGCACATGCCCGAGCCCAGCATGTGC-GACCGCAACCATCGG
1 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CCGCAACCCTCGG
* * * * *
4917503 TCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGATTGGTAATGAACTCCATATGCC
65 TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * *
4917568 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGAGCAGGATGCGCGAG-CT
130 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * * *
4917632 AGGGATCGACCGGGTCCCCCTCTGCATGC-AGCCGATCTTGCTGCCACAA-CCTCGGTCCAGTCC
195 A-GGATCGGCTGGGTCCCCCTCTGCGTGCTA-CCGATCCTGCTGCCACAACCCTCGGTTCGGTCC
* * *
4917695 GATCTTAGACTAGGAATGAACTCCGTATGCCCAAGCCAACTGACGAAACGAGCGGGCGGGCGGGC
258 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* * * * *
4917760 ACTACGTCGGCCAGAGAGACGGGATGCACAAGTCGTGGATCTATAGCGTGGTAGGTGGGTTTAGG
323 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
** *
4917825 CACATCTTCATATTTAAG-TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
388 CACATCTTCATATTTCTGCAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
*
4917889 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCCAAAC
453 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAC
*
4917954 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
518 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
4918019 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG-TTAAAACTTGAAGTGTACAAGATT
583 TGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
4918083 TTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGCCAGCAAACCTGT
648 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * ** *
4918148 AAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGCCCCAAA
713 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
4918213 ATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACGCCCCCGGCCCCCCGATCGC
778 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGGCCCCCCGATCAC
* *
4918278 CGGAACCCCAATGTCGCTGGTCAGGTTCTCCGGCGATGCTCAGACGATGGTGCC
842 CGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
* * * * * * * *
4918332 CCGACGAAGAAAAATGCAGCACCAGGACATGCTCGAGCCTAGCAGGTGCTGCTGTAAACCTCGGT
1 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * *
4918397 CGGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCT
66 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
4918462 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACTGGCTAGAGGGGCGGGATGCGCAAGCCGG
131 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGA
* * ** *
4918527 GGATCGGCTAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTTAGTTTGGTCCGAT
196 GGATCGGCTGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTTCGGTCCGAT
* * * *
4918592 CTTAGACTGGGAATGAACTCCGTATGCGTAAGCCAACCGATGAAATGAGCAGGCGGGCGGGCACT
261 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
** * * * *
4918657 ACGCCACCCAGAAAGACGGGATACGCAAGCCGTTGG-TCGATAGGGTGGTATGTGGGTTTAGGCG
326 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCG-TGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
4918721 CATCTTCATATTTCTGCAG-GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
390 CATCTTCATATTTCTGCAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * **
4918785 AAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACGATTTTTGAAA-TT
455 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTT
* *
4918849 TTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTG
520 TTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
*
4918914 ATCCTTGTATTTTTGTTGGCACGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
585 ATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* *
4918979 GTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAA
650 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
4919044 AATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAGTAT
715 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * * *
4919109 AAGGGCCAAGTACCCGCACCCATCGCACATCATGTGCGCACACGCCCTCTGACCCCCCAATCATC
780 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCC-CCGGCCCCCCGATCACC
*
4919174 GGAACCCCAATGCCGCCGGTCAGGTTCT----C-A-G----G-CGATGGTGCC
843 GGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
* * * * * * * * *
4919216 CCGACGAAAAAAAATACGACACCAACAAATGCCTGAGCCCAGAATGTGCTACCGCAACCCTTGGT
1 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* *
4919281 CCGGTCCGATCTTAGACTGGGAATGAACTCAGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
66 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * ** * *
4919346 GAGTCAACCCACGAAACGATCGTGTGGATGCTCAACCGGCCAGAGGGGCGGGACGCGTAAGCC-A
131 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGA
* * * ** * *
4919410 GGGATC-GATCGGGTCCCCCTCTGCGTGCTACCAATCCTGCTACGGCAACCCTCGATTCGGTTCG
196 -GGATCGGCT-GGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTTCGGTCCG
*
4919474 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCGGGCA
259 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
* * * * *
4919535 TTACGTCGGCCAGAGTGACGGGATGCGCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
324 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
4919600 ACATCTTCATATTTTTAC-GTGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATAGG-CCC
389 ACATCTTCATATTTCTGCAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT-GGTCCC
* * * * *
4919663 TTAGGACTTCTCGTCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCGTGATTTTCAAAAC
453 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAC
* * *
4919728 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGACA
518 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
4919793 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATT
583 TGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
** * *
4919858 TTGTGACCATTCAAAAAAAGTGTCCCCATTTCAAATACTTTAATGGCTACTGGCAGCAAA-CTGT
648 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * *
4919922 -AAATCTCAAATGC-CCTTAAGGGGTTGTGAG-TCTTCGAGGTTTGATGAGAGATAGGAGGCCAA
713 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGGTTTGATGAGGGATAGGGGGCCAA
4919984 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCGCCCGATCA
777 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC-CCCGATCA
* * * * * * * *
4920049 TCGGAACCCTAATGCCGCCGGTCAGGTTTTTCGGCAATGCTCTGGCGATGGTGCC
841 CCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
* * *
4920104 CCGACGAAGAGAATTGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
1 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* *
4920169 CTGATCCGATCTTAGACTGGGAATGAAGTCCGTATG
66 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
4920205 AGTAAGCCAA
Statistics
Matches: 6413, Mismatches: 729, Indels: 238
0.87 0.10 0.03
Matches are distributed among these distances:
872 1 0.00
873 2 0.00
874 171 0.03
875 96 0.01
876 7 0.00
877 40 0.01
878 87 0.01
879 208 0.03
880 447 0.07
881 208 0.03
882 1 0.00
883 4 0.00
884 267 0.04
885 4 0.00
886 1 0.00
887 1 0.00
888 95 0.01
889 2 0.00
890 1 0.00
891 1 0.00
893 815 0.13
894 755 0.12
895 256 0.04
896 86 0.01
897 470 0.07
898 512 0.08
899 472 0.07
900 23 0.00
901 320 0.05
902 10 0.00
903 118 0.02
904 212 0.03
905 550 0.09
906 169 0.03
907 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (895 bp):
CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGA
GGATCGGCTGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTTCGGTCCGAT
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTGCAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTT
TTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCACCGGA
ACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
Found at i:4919327 original size:26 final size:26
Alignment explanation
Indices: 4919291--4919343 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4919281 CCGGTCCGAT
4919291 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
4919317 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
4919343 C
1 C
4919344 CTGAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:4920918 original size:26 final size:26
Alignment explanation
Indices: 4920889--4920941 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4920879 CCGATCCGAT
4920889 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4920915 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4920941 C
1 C
4920942 CTAAGCAAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4923284 original size:26 final size:26
Alignment explanation
Indices: 4923248--4923300 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4923238 TCGGTCTGAT
4923248 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4923274 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4923300 C
1 C
4923301 CTAAGCAAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4923676 original size:12 final size:12
Alignment explanation
Indices: 4923646--4923680 Score: 56
Period size: 11 Copynumber: 3.1 Consensus size: 12
4923636 TCTTTATCAT
4923646 TTTTAT-TTTTA
1 TTTTATATTTTA
4923657 TTTT-TATTTTA
1 TTTTATATTTTA
4923668 TTTTATATTTTA
1 TTTTATATTTTA
4923680 T
1 T
4923681 GTATATCCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 13 0.59
12 8 0.36
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (12 bp):
TTTTATATTTTA
Found at i:4923753 original size:36 final size:39
Alignment explanation
Indices: 4923697--4923770 Score: 109
Period size: 36 Copynumber: 2.0 Consensus size: 39
4923687 CCTATGTATT
4923697 TATTATTTATTTATTATTAATAATATATATTTATTTTTG
1 TATTATTTATTTATTATTAATAATATATATTTATTTTTG
* *
4923736 TATT-TTTATTTA-T-TTAATTATATATTTTTATTTTT
1 TATTATTTATTTATTATTAATAATATATATTTATTTTT
4923771 TTATCCTATA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
36 20 0.61
37 1 0.03
38 8 0.24
39 4 0.12
ACGTcount: A:0.30, C:0.00, G:0.01, T:0.69
Consensus pattern (39 bp):
TATTATTTATTTATTATTAATAATATATATTTATTTTTG
Found at i:4923765 original size:18 final size:17
Alignment explanation
Indices: 4923693--4923841 Score: 56
Period size: 18 Copynumber: 8.3 Consensus size: 17
4923683 ATATCCTATG
*
4923693 TATTTATTATTTATTTAT
1 TATTTATTATATATTT-T
* * *
4923711 TATTAATAATATATATT
1 TATTTATTATATATTTT
* *
4923728 TATTT-TTGTATTTTTATT
1 TATTTATTATA-TATT-TT
4923746 TATTTAATTATATATTTT
1 TATTT-ATTATATATTTT
4923764 TATTTTTTTATCCTATAATATTTT
1 TA----TTTAT--TAT-ATATTTT
* *
4923788 T-TTTATTATCT-TTTC
1 TATTTATTATATATTTT
* *
4923803 TAATTATCTATTATTTTTT
1 TATTTAT-TA-TATATTTT
4923822 TATTTATT-T-TATTTT
1 TATTTATTATATATTTT
4923837 TATTT
1 TATTT
4923842 TGGAGGGCTG
Statistics
Matches: 98, Mismatches: 18, Indels: 33
0.66 0.12 0.22
Matches are distributed among these distances:
15 14 0.14
16 9 0.09
17 12 0.12
18 26 0.27
19 17 0.17
20 4 0.04
21 2 0.02
22 3 0.03
23 3 0.03
24 8 0.08
ACGTcount: A:0.26, C:0.03, G:0.01, T:0.70
Consensus pattern (17 bp):
TATTTATTATATATTTT
Found at i:4923821 original size:20 final size:18
Alignment explanation
Indices: 4923790--4923837 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
4923780 AATATTTTTT
*
4923790 TTATTATCTTTTCTAATTA
1 TTATTAT-TTTTTTAATTA
*
4923809 TCTATTATTTTTTTATTTA
1 T-TATTATTTTTTTAATTA
4923828 TT-TTATTTTT
1 TTATTATTTTT
4923838 ATTTTGGAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
17 8 0.31
18 1 0.04
19 11 0.42
20 6 0.23
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (18 bp):
TTATTATTTTTTTAATTA
Found at i:4924711 original size:12 final size:13
Alignment explanation
Indices: 4924668--4924824 Score: 62
Period size: 12 Copynumber: 11.9 Consensus size: 13
4924658 AAAATTTTTT
*
4924668 TTTTATTTGTTTA
1 TTTTATTTATTTA
*
4924681 -TTTATTTGTTTA
1 TTTTATTTATTTA
4924693 TTTTATTTATTT-
1 TTTTATTTATTTA
*
4924705 TTATATTTA-TTA
1 TTTTATTTATTTA
** **
4924717 GATTAGGT-TTTA
1 TTTTATTTATTTA
4924729 TTTAATATTT-TTTA
1 TTT--TATTTATTTA
4924743 TCTTTATCTTATTT-
1 T-TTTAT-TTATTTA
*
4924757 TTATT-TTTGTTTTA
1 TT-TTATTT-ATTTA
* *
4924771 CTTTTCTTTATTTT
1 -TTTTATTTATTTA
4924785 TTTTATTTATTTCA
1 TTTTATTTATTT-A
4924799 CTTTTATTT-TTT-
1 -TTTTATTTATTTA
4924811 TTATTATTCTATTT
1 TT-TTATT-TATTT
4924825 TCTTTAAATA
Statistics
Matches: 110, Mismatches: 16, Indels: 35
0.68 0.10 0.22
Matches are distributed among these distances:
11 4 0.04
12 34 0.31
13 30 0.27
14 24 0.22
15 18 0.16
ACGTcount: A:0.18, C:0.04, G:0.04, T:0.73
Consensus pattern (13 bp):
TTTTATTTATTTA
Found at i:4924711 original size:17 final size:17
Alignment explanation
Indices: 4924667--4924824 Score: 60
Period size: 17 Copynumber: 8.9 Consensus size: 17
4924657 TAAAATTTTT
*
4924667 TTTTTATTTGTTTATTTA
1 TTTTTATAT-TTTATTTA
4924685 TTTGTT-TATTTTATTTA
1 TTT-TTATATTTTATTTA
4924702 TTTTTATA-TTTA-TTA
1 TTTTTATATTTTATTTA
** **
4924717 -GATTAGGTTTTATTTAA
1 TTTTTATATTTTATTT-A
*
4924734 TATTTTTTATCTTTATCTTA
1 T-TTTTATAT-TTTAT-TTA
*
4924754 TTTTTAT-TTTTGTTTTA
1 TTTTTATATTTT-ATTTA
* *
4924771 CTTTTCTTTATTTTTTTTA
1 -TTTT-TATATTTTATTTA
4924790 TTTATT-TCACTTTTATTT-
1 TTT-TTAT-A-TTTTATTTA
*
4924808 TTTTTATTATTCTATTT
1 TTTTTA-TATTTTATTT
4924825 TCTTTAAATA
Statistics
Matches: 107, Mismatches: 15, Indels: 37
0.67 0.09 0.23
Matches are distributed among these distances:
14 3 0.03
15 7 0.07
16 8 0.07
17 30 0.28
18 20 0.19
19 26 0.24
20 11 0.10
21 2 0.02
ACGTcount: A:0.18, C:0.04, G:0.04, T:0.73
Consensus pattern (17 bp):
TTTTTATATTTTATTTA
Found at i:4924732 original size:4 final size:4
Alignment explanation
Indices: 4924669--4924715 Score: 51
Period size: 4 Copynumber: 11.5 Consensus size: 4
4924659 AAATTTTTTT
* *
4924669 TTTA TTTG TTTA TTTA TTTG TTTA TTTTA TTTA TTT- TTATA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TT-TA TTTA TT
4924716 AGATTAGGTT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
3 2 0.06
4 28 0.78
5 6 0.17
ACGTcount: A:0.19, C:0.00, G:0.04, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:4924774 original size:27 final size:28
Alignment explanation
Indices: 4924738--4924830 Score: 88
Period size: 27 Copynumber: 3.4 Consensus size: 28
4924728 ATTTAATATT
*
4924738 TTTTATCTTTATCTTATTTTTATT-TTTG
1 TTTTA-CTTTATCTTATTTTTATTATTTA
*
4924766 TTTTACTTT-TCTTTATTTTTTTTATTTA
1 TTTTACTTTATC-TTATTTTTATTATTTA
*
4924794 TTTCACTTTTAT-TT-TTTTTATTATTCTA
1 TTTTAC-TTTATCTTATTTTTATTATT-TA
4924822 TTTT-CTTTA
1 TTTTACTTTA
4924831 AATAAAAATC
Statistics
Matches: 55, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
26 6 0.11
27 25 0.45
28 20 0.36
29 3 0.05
30 1 0.02
ACGTcount: A:0.15, C:0.09, G:0.01, T:0.75
Consensus pattern (28 bp):
TTTTACTTTATCTTATTTTTATTATTTA
Found at i:4924823 original size:28 final size:28
Alignment explanation
Indices: 4924745--4924824 Score: 92
Period size: 28 Copynumber: 2.9 Consensus size: 28
4924735 ATTTTTTATC
* *
4924745 TTTATCTTATTTTTATT-TTTGTTTTACT
1 TTTAT-TTATTTTTATTATTTATTTCACT
* *
4924773 TTTCTTTATTTTTTTTATTTATTTCACT
1 TTTATTTATTTTTATTATTTATTTCACT
4924801 TTTATTT-TTTTTATTATTCTATTT
1 TTTATTTATTTTTATTATT-TATTT
4924825 TCTTTAAATA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
27 20 0.45
28 24 0.55
ACGTcount: A:0.15, C:0.07, G:0.01, T:0.76
Consensus pattern (28 bp):
TTTATTTATTTTTATTATTTATTTCACT
Found at i:4925072 original size:119 final size:112
Alignment explanation
Indices: 4924833--4925181 Score: 393
Period size: 111 Copynumber: 3.0 Consensus size: 112
4924823 TTTCTTTAAA
* * *
4924833 TAAAAATCAAAAGTTCCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATCTTCC-TTGA
1 TAAAAATC-AAA-TTTC-AAAAAAAGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTTG-
*
4924897 AAATCAAAATTTCTGAAAAATATTTTTAGGGAAAAGTTGAAAGTATTC-ATTTTCCT
62 -AA--AAAATTTC-AAAAAATATTTTT-GGGAAAAGTTGAAAGTA-TCAATTTTCCT
*
4924953 TAAAAAT-AAATTTTCAAAAAAAAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAA-TTTC----AAAAAAA--GATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
4925017 TTGAAAAAATTTCAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
59 TTGAAAAAATTTC-AAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
* * * **
4925072 TGAAAATCAAATTTCCAAAAAATATTTTTGGGGAAAAGTTG-AAGTATCAATTTT-CTTAAAAAT
1 TAAAAATCAAATTTCAAAAAAAGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTTGAAA-
*
4925135 AAATTTCAAAAAATATTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
65 AAATTTCAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCC
4925182 CTACACAAGA
Statistics
Matches: 206, Mismatches: 14, Indels: 27
0.83 0.06 0.11
Matches are distributed among these distances:
111 45 0.22
112 20 0.10
113 17 0.08
115 6 0.03
118 8 0.04
119 35 0.17
120 30 0.15
121 8 0.04
122 2 0.01
123 32 0.16
124 3 0.01
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (112 bp):
TAAAAATCAAATTTCAAAAAAAGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTTGAAAA
AATTTCAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:4929100 original size:11 final size:11
Alignment explanation
Indices: 4929086--4929162 Score: 54
Period size: 11 Copynumber: 7.2 Consensus size: 11
4929076 ACAATGGATG
4929086 AAAAATGAGAA
1 AAAAATGAGAA
**
4929097 AAAAAAAAG-A
1 AAAAATGAGAA
* *
4929107 GAAGATGATGAA
1 AAAAATGA-GAA
**
4929119 AAGAAAAAAGAA
1 AA-AAATGAGAA
4929131 AAAAATGAG-A
1 AAAAATGAGAA
4929141 AAAAA--AGAA
1 AAAAATGAGAA
4929150 AAAAATGAGAA
1 AAAAATGAGAA
4929161 AA
1 AA
4929163 TGAAAAAAAG
Statistics
Matches: 48, Mismatches: 12, Indels: 12
0.67 0.17 0.17
Matches are distributed among these distances:
8 2 0.04
9 6 0.12
10 11 0.23
11 19 0.40
12 7 0.15
13 3 0.06
ACGTcount: A:0.75, C:0.00, G:0.18, T:0.06
Consensus pattern (11 bp):
AAAAATGAGAA
Found at i:4929120 original size:21 final size:21
Alignment explanation
Indices: 4929096--4929162 Score: 59
Period size: 19 Copynumber: 3.3 Consensus size: 21
4929086 AAAAATGAGA
* **
4929096 AAAAAAAAAGAGAAGATGATG
1 AAAAAAAAAGAGAAAAAAATG
4929117 AAAAGAAAAA-AGAAAAAAATG
1 AAAA-AAAAAGAGAAAAAAATG
*
4929138 -AGAAAAAA-AGAAAAAAATG
1 AAAAAAAAAGAGAAAAAAATG
*
4929157 AGAAAA
1 AAAAAA
4929163 TGAAAAAAAG
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
19 16 0.42
20 5 0.13
21 12 0.32
22 5 0.13
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.06
Consensus pattern (21 bp):
AAAAAAAAAGAGAAAAAAATG
Found at i:4929124 original size:27 final size:25
Alignment explanation
Indices: 4929093--4929170 Score: 72
Period size: 27 Copynumber: 3.0 Consensus size: 25
4929083 ATGAAAAATG
4929093 AGAAAAAAAAAAGAGAAGATGATGAAA
1 AGAAAAAAAAAAGAGAA-ATGA-GAAA
*
4929120 AGAAAAAAGAAA-A-AAATGAGAAA
1 AGAAAAAAAAAAGAGAAATGAGAAA
*
4929143 A-AAAGAAAAAAATGAGAAAATGAAAAA
1 AGAAA-AAAAAAA-GAG-AAATGAGAAA
4929170 A
1 A
4929171 AGAGATTCAA
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
22 3 0.07
23 11 0.26
24 4 0.09
25 3 0.07
26 1 0.02
27 21 0.49
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.06
Consensus pattern (25 bp):
AGAAAAAAAAAAGAGAAATGAGAAA
Found at i:4929135 original size:8 final size:8
Alignment explanation
Indices: 4929117--4929173 Score: 53
Period size: 8 Copynumber: 6.8 Consensus size: 8
4929107 GAAGATGATG
4929117 AAAAG-AA
1 AAAAGAAA
4929124 AAAAGAAAA
1 AAAAG-AAA
4929133 AAATGAGAAA
1 AAA--AGAAA
4929143 AAAAGAAA
1 AAAAGAAA
*
4929151 AAAATGAGA
1 AAAA-GAAA
*
4929160 AAATGAAA
1 AAAAGAAA
4929168 AAAAGA
1 AAAAGA
4929174 GATTCAAATT
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
7 5 0.12
8 17 0.41
9 11 0.27
10 6 0.15
11 2 0.05
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (8 bp):
AAAAGAAA
Found at i:4929141 original size:18 final size:18
Alignment explanation
Indices: 4929120--4929175 Score: 80
Period size: 19 Copynumber: 3.2 Consensus size: 18
4929110 GATGATGAAA
4929120 AGAAAAAAGAAAAAAATG
1 AGAAAAAAGAAAAAAATG
4929138 AGAAAAAAAGAAAAAAATG
1 AG-AAAAAAGAAAAAAATG
*
4929157 AG-AAAATGAAAAAAA-G
1 AGAAAAAAGAAAAAAATG
4929173 AGA
1 AGA
4929176 TTCAAATTGA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
16 3 0.09
17 12 0.34
18 2 0.06
19 18 0.51
ACGTcount: A:0.77, C:0.00, G:0.18, T:0.05
Consensus pattern (18 bp):
AGAAAAAAGAAAAAAATG
Found at i:4929171 original size:19 final size:19
Alignment explanation
Indices: 4929122--4929162 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
4929112 TGATGAAAAG
4929122 AAAAAAGAAAAAAATGAGA
1 AAAAAAGAAAAAAATGAGA
4929141 AAAAAAGAAAAAAATGAGA
1 AAAAAAGAAAAAAATGAGA
4929160 AAA
1 AAA
4929163 TGAAAAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.80, C:0.00, G:0.15, T:0.05
Consensus pattern (19 bp):
AAAAAAGAAAAAAATGAGA
Found at i:4929171 original size:45 final size:45
Alignment explanation
Indices: 4929086--4929170 Score: 124
Period size: 45 Copynumber: 1.9 Consensus size: 45
4929076 ACAATGGATG
4929086 AAAAATGAGAAAAAAAAAAGAGAAGATGATGAAAAGAAAAAAGAA
1 AAAAATGAGAAAAAAAAAAGAGAAGATGATGAAAAGAAAAAAGAA
4929131 AAAAATGAGAAAAAAAGAAA-A-AA-ATGA-GAAAATGAAAAAA
1 AAAAATGAGAAAAAAA-AAAGAGAAGATGATGAAAA-GAAAAAA
4929171 AGAGATTCAA
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
42 5 0.13
43 11 0.29
44 2 0.05
45 17 0.45
46 3 0.08
ACGTcount: A:0.75, C:0.00, G:0.18, T:0.07
Consensus pattern (45 bp):
AAAAATGAGAAAAAAAAAAGAGAAGATGATGAAAAGAAAAAAGAA
Found at i:4930536 original size:43 final size:41
Alignment explanation
Indices: 4930485--4930621 Score: 148
Period size: 43 Copynumber: 3.2 Consensus size: 41
4930475 GCCTTTGAAC
4930485 TCAAATGAAAAGCTTTGAATTTTTGGATGTGAATTTCCAAAAT
1 TCAAATGAAAAGCTTT-AATTTTTGGATGTGAA-TTCCAAAAT
* **
4930528 TCAAATGAAAAGCTTTAGATTTTTGGATATGAATTCCAAGTT
1 TCAAATGAAAAGCTTTA-ATTTTTGGATGTGAATTCCAAAAT
* * * **
4930570 TGCCAAATAAAAACCTTTAACTTTTGGATGTGAGCCTCCAAAAT
1 T--CAAATGAAAAGCTTTAATTTTTGGATGTGA-ATTCCAAAAT
4930614 TCAAATGA
1 TCAAATGA
4930622 GGATCTTTCA
Statistics
Matches: 78, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
42 15 0.19
43 42 0.54
44 21 0.27
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.34
Consensus pattern (41 bp):
TCAAATGAAAAGCTTTAATTTTTGGATGTGAATTCCAAAAT
Found at i:4930895 original size:41 final size:42
Alignment explanation
Indices: 4930820--4930904 Score: 145
Period size: 41 Copynumber: 2.0 Consensus size: 42
4930810 TGATTGTCAG
* *
4930820 GGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGA
1 GGAGCAATTTACTTTCCAAAAGTCATGGTGCCTCTATTTAGA
4930862 GGAGCAATTTACTTTCC-AAAGTCATGGTGCCTCTATTTAGA
1 GGAGCAATTTACTTTCCAAAAGTCATGGTGCCTCTATTTAGA
4930903 GG
1 GG
4930905 GGAAAGTCGT
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
41 24 0.59
42 17 0.41
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.33
Consensus pattern (42 bp):
GGAGCAATTTACTTTCCAAAAGTCATGGTGCCTCTATTTAGA
Found at i:4930910 original size:28 final size:28
Alignment explanation
Indices: 4930879--4930932 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
4930869 TTTACTTTCC
4930879 AAAGTCATGGTGCCTCTATTTAGAGGGG
1 AAAGTCATGGTGCCTCTATTTAGAGGGG
* *
4930907 AAAGTCGTGGTGCCTCTGTTTAGAGG
1 AAAGTCATGGTGCCTCTATTTAGAGG
4930933 AGCAATTTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.22, C:0.15, G:0.33, T:0.30
Consensus pattern (28 bp):
AAAGTCATGGTGCCTCTATTTAGAGGGG
Found at i:4930920 original size:69 final size:69
Alignment explanation
Indices: 4930838--4931043 Score: 349
Period size: 69 Copynumber: 3.0 Consensus size: 69
4930828 TTACTTTCCA
*
4930838 AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCATGGTGCCTCTATTTAGA
1 AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTATTTAGA
4930903 GGGG
66 GGGG
*
4930907 AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTTGTGGTGCCTCTATTTAGA
1 AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTATTTAGA
4930972 GGGG
66 GGGG
* * * *
4930976 AAAGTCGTAGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTAAAAGTCGTGGTGCCTTTGTTTAG
1 AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTC-CAAAGTCGTGGTGCCTCTATTTAG
4931041 AGG
65 AGG
4931044 AGCAATTTAC
Statistics
Matches: 129, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
69 106 0.82
70 23 0.18
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (69 bp):
AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTATTTAGA
GGGG
Found at i:4930979 original size:28 final size:28
Alignment explanation
Indices: 4930948--4931001 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
4930938 TTTACTTTCC
* *
4930948 AAAGTTGTGGTGCCTCTATTTAGAGGGG
1 AAAGTCGTAGTGCCTCTATTTAGAGGGG
*
4930976 AAAGTCGTAGTGCCTCTGTTTAGAGG
1 AAAGTCGTAGTGCCTCTATTTAGAGG
4931002 AGCAATTTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.22, C:0.13, G:0.33, T:0.31
Consensus pattern (28 bp):
AAAGTCGTAGTGCCTCTATTTAGAGGGG
Found at i:4931023 original size:42 final size:42
Alignment explanation
Indices: 4930976--4931255 Score: 449
Period size: 42 Copynumber: 6.7 Consensus size: 42
4930966 TTTAGAGGGG
* *
4930976 AAAGTCGTAGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTA
1 AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTC
*
4931018 AAAGTCGTGGTGCCTTTGTTTAGAGGAGCAATTTACTTTCTC
1 AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTC
4931060 AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTT-TCC
1 AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCT-C
*
4931102 AAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTT-TCC
1 AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCT-C
*
4931144 AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTA
1 AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTC
4931186 AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTC-C
1 AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTC
***
4931227 AAAGTCGTCAAGCCTCTGTTTAGAGGAGC
1 AAAGTCGTGGTGCCTCTGTTTAGAGGAGC
4931256 TTTAAAAAAA
Statistics
Matches: 225, Mismatches: 11, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
41 27 0.12
42 197 0.88
43 1 0.00
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.35
Consensus pattern (42 bp):
AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTC
Found at i:4931277 original size:10 final size:10
Alignment explanation
Indices: 4931259--4931289 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
4931249 GAGGAGCTTT
4931259 AAAAA-AAAA
1 AAAAACAAAA
4931268 AAAAACAAAA
1 AAAAACAAAA
4931278 AAAAACAAAA
1 AAAAACAAAA
4931288 AA
1 AA
4931290 GTTGCCTCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 5 0.24
10 16 0.76
ACGTcount: A:0.94, C:0.06, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAACAAAA
Found at i:4931373 original size:1 final size:1
Alignment explanation
Indices: 4931367--4931408 Score: 57
Period size: 1 Copynumber: 42.0 Consensus size: 1
4931357 TTGATCATTT
* * *
4931367 AAAAAAAAAAAAAACAAAAAAACAAAAAAAAACAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
4931409 TTACCTCTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
1 35 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:4931385 original size:10 final size:10
Alignment explanation
Indices: 4931367--4931408 Score: 63
Period size: 10 Copynumber: 4.5 Consensus size: 10
4931357 TTGATCATTT
4931367 AAAAA-AAAA
1 AAAAACAAAA
4931376 AAAAAC--AA
1 AAAAACAAAA
4931384 AAAAACAAAA
1 AAAAACAAAA
4931394 AAAAACAAAA
1 AAAAACAAAA
4931404 AAAAA
1 AAAAA
4931409 TTACCTCTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
8 8 0.27
9 5 0.17
10 17 0.57
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAACAAAA
Found at i:4931393 original size:18 final size:17
Alignment explanation
Indices: 4931367--4931408 Score: 75
Period size: 18 Copynumber: 2.4 Consensus size: 17
4931357 TTGATCATTT
4931367 AAAAAAAAAAAAAACAA
1 AAAAAAAAAAAAAACAA
4931384 AAAAACAAAAAAAAACAA
1 AAAAA-AAAAAAAAACAA
4931402 AAAAAAA
1 AAAAAAA
4931409 TTACCTCTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 7 0.29
18 17 0.71
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAAAAAACAA
Found at i:4931574 original size:125 final size:117
Alignment explanation
Indices: 4931259--4931625 Score: 474
Period size: 118 Copynumber: 3.1 Consensus size: 117
4931249 GAGGAGCTTT
* * * *
4931259 AAAAAAAAAAAAAACAAAAAAAAACAAAAAAGTTGCCTCTATTTAGAGGAGCTTCATTTATGTTT
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTACCTCTATTTAGAGGAGCTTTATTTATGTTT
* *
4931324 CTCAAAGTCATTGAGCCTCTGCATAGAGGAGCTTTGATCATTTAAAAAAAAA
66 CTCAAAGTCATTGAACCTCTGCTTAGAGGAGCTTTGATCATTTAAAAAAAAA
* * *
4931376 AAAAACAAAAAAACAAAAAAAAACAAAAAAAAA-TTACCTCTATTTAGAAGAGCTTTGTTTATGT
1 AAAAA-AAAAAAA-AAAAAAAAAAAAAAAAAAAGTTACCTCTATTTAGAGGAGCTTTATTTATGT
4931440 TTCTCAAAGTCATTGAACCTCTGCTTAGAGGAGCTTTGATCAATTTAAAAAAAAA
64 TTCTCAAAGTCATTGAACCTCTGCTTAGAGGAGCTTTGATC-ATTTAAAAAAAAA
4931495 AGTAAAAAAAAACAAAAAAAGCAAAAAAATGAAAAAAAGTTACCTCTATTTAGAGGAGCTTTATT
1 A--AAAAAAAAA-AAAAAAA--AAAAAAA--AAAAAAAGTTACCTCTATTTAGAGGAGCTTTATT
* * * * *
4931560 TATGTTTCTTAAAGTCGTTGAACCTCTGTTTAAAGGAGCTTTGGT-A---AAAAAAAAA
59 TATGTTTCTCAAAGTCATTGAACCTCTGCTTAGAGGAGCTTTGATCATTTAAAAAAAAA
*
4931615 ACAAAAAAAAA
1 AAAAAAAAAAA
4931626 TGAAAATGTT
Statistics
Matches: 221, Mismatches: 18, Indels: 22
0.85 0.07 0.08
Matches are distributed among these distances:
117 6 0.03
118 81 0.37
119 30 0.14
120 20 0.09
121 6 0.03
122 6 0.03
123 1 0.00
124 7 0.03
125 64 0.29
ACGTcount: A:0.49, C:0.12, G:0.13, T:0.26
Consensus pattern (117 bp):
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTACCTCTATTTAGAGGAGCTTTATTTATGTTT
CTCAAAGTCATTGAACCTCTGCTTAGAGGAGCTTTGATCATTTAAAAAAAAA
Found at i:4931797 original size:6 final size:6
Alignment explanation
Indices: 4931786--4931820 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
4931776 TATCTTTGTC
4931786 ATTTTT ATTTTT ATTTTT A-TTTT ATTTTAT ATTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTT-T ATTTT
4931821 ATGTATATCC
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.19
6 16 0.59
7 6 0.22
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (6 bp):
ATTTTT
Found at i:4931821 original size:12 final size:12
Alignment explanation
Indices: 4931788--4931822 Score: 56
Period size: 11 Copynumber: 3.1 Consensus size: 12
4931778 TCTTTGTCAT
4931788 TTTTAT-TTTTA
1 TTTTATATTTTA
4931799 TTTT-TATTTTA
1 TTTTATATTTTA
4931810 TTTTATATTTTA
1 TTTTATATTTTA
4931822 T
1 T
4931823 GTATATCCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 13 0.59
12 8 0.36
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (12 bp):
TTTTATATTTTA
Found at i:4931909 original size:18 final size:16
Alignment explanation
Indices: 4931876--4931915 Score: 62
Period size: 18 Copynumber: 2.4 Consensus size: 16
4931866 TATATTGTTA
4931876 TTATTTTTTATTTTAT
1 TTATTTTTTATTTTAT
4931892 TTATTTTTGTATTTTTAT
1 TTATTTTT-TA-TTTTAT
4931910 TTATTT
1 TTATTT
4931916 AATTATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 8 0.36
17 2 0.09
18 12 0.55
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (16 bp):
TTATTTTTTATTTTAT
Found at i:4931926 original size:22 final size:22
Alignment explanation
Indices: 4931880--4931936 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
4931870 TTGTTATTAT
* * *
4931880 TTTTTATTTTATTTATTTTTGTA
1 TTTTTA-TTTATTTAATTATATA
4931903 TTTTTATTTATTTAATTATATA
1 TTTTTATTTATTTAATTATATA
*
4931925 TTATTA-TTATTT
1 TTTTTATTTATTT
4931937 TTTTATCCTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 6 0.20
22 18 0.60
23 6 0.20
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.74
Consensus pattern (22 bp):
TTTTTATTTATTTAATTATATA
Found at i:4931932 original size:55 final size:54
Alignment explanation
Indices: 4931835--4932004 Score: 150
Period size: 55 Copynumber: 3.1 Consensus size: 54
4931825 ATATCCTATG
* *
4931835 TATTTATTATTTATTTATTA-TTA-ATAATATATATATTGTTATTATTTTTTATTT
1 TATTTATTTTTTATTT-TTATTTATATAAT-TATATATTATTATTATTTTTTATTT
* **
4931889 TATTTATTTTTGTATTTTTATTTATTTAATTATATATTATTATTATTTTTTTATCC
1 TATTTATTTTT-TATTTTTATTTATATAATTATATATTATTATTA-TTTTTTATTT
* * * * *
4931945 TATAATATTTTTT-TTATTATCTTCTCTAATTATCTATTATT-TTATTTATTTATTT
1 TAT-TTATTTTTTATTTTTAT-TTATATAATTATATATTATTATTATTT-TTTATTT
*
4932000 GATTT
1 TATTT
4932005 TTATTTTGGA
Statistics
Matches: 95, Mismatches: 14, Indels: 14
0.77 0.11 0.11
Matches are distributed among these distances:
54 17 0.18
55 38 0.40
56 33 0.35
57 7 0.07
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.68
Consensus pattern (54 bp):
TATTTATTTTTTATTTTTATTTATATAATTATATATTATTATTATTTTTTATTT
Found at i:4931953 original size:24 final size:25
Alignment explanation
Indices: 4931921--4931993 Score: 62
Period size: 24 Copynumber: 2.9 Consensus size: 25
4931911 TATTTAATTA
*
4931921 TATATTATTATTATTTTTTTATC-C
1 TATAATATTATTATTTTTTTATCTC
*
4931945 TATAATATT-TT-TTTTATTATCTTC
1 TATAATATTATTATTTTTTTATC-TC
*
4931969 TCTAATTATCTATTATTTTATTTAT
1 TATAA-TAT-TATTATTTT-TTTAT
4931994 TTATTTGATT
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
22 9 0.24
23 2 0.05
24 13 0.34
25 3 0.08
26 1 0.03
27 2 0.05
28 4 0.11
29 4 0.11
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.66
Consensus pattern (25 bp):
TATAATATTATTATTTTTTTATCTC
Found at i:4932906 original size:6 final size:6
Alignment explanation
Indices: 4932883--4932959 Score: 52
Period size: 6 Copynumber: 12.8 Consensus size: 6
4932873 TATTTAATAT
* * * *
4932883 TTTTTA TCTTTA -TCTTA TTTTTA TTTTTG TTTTAGTT TTCTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT--TA TT-TTTA TTTTTA
* *
4932933 TTTTTA --TTTA TTTTCA CTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
4932960 TTATTATTCT
Statistics
Matches: 54, Mismatches: 11, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
4 4 0.07
5 3 0.06
6 39 0.72
7 3 0.06
8 3 0.06
9 2 0.04
ACGTcount: A:0.14, C:0.06, G:0.03, T:0.77
Consensus pattern (6 bp):
TTTTTA
Found at i:4932937 original size:16 final size:16
Alignment explanation
Indices: 4932897--4932967 Score: 70
Period size: 16 Copynumber: 4.3 Consensus size: 16
4932887 TATCTTTATC
*
4932897 TTATTTTTATTTTTGTT
1 TTATTTTTATTTAT-TT
* *
4932914 TTAGTTTTCTTTATTT
1 TTATTTTTATTTATTT
4932930 TTATTTTTATTTATTT
1 TTATTTTTATTTATTT
* * *
4932946 TCACTTTTATTTTTTT
1 TTATTTTTATTTATTT
4932962 ATTATT
1 -TTATT
4932968 CTATTTTCTT
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
16 29 0.67
17 14 0.33
ACGTcount: A:0.15, C:0.04, G:0.03, T:0.77
Consensus pattern (16 bp):
TTATTTTTATTTATTT
Found at i:4932952 original size:27 final size:27
Alignment explanation
Indices: 4932897--4932975 Score: 83
Period size: 27 Copynumber: 2.9 Consensus size: 27
4932887 TATCTTTATC
*
4932897 TTATTTTTATTTTTGTTTTAGTTTT-C-T
1 TTATTTTTATTTTT-ATTTA-TTTTCCTT
4932924 TTATTTTTATTTTTATTTATTTTCACTT
1 TTATTTTTATTTTTATTTATTTTC-CTT
*
4932952 TTATTTTT-TTATTATTCTATTTTC
1 TTATTTTTATTTTTATT-TATTTTC
4932976 TTTAAATAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
25 4 0.09
26 4 0.09
27 22 0.48
28 16 0.35
ACGTcount: A:0.15, C:0.06, G:0.03, T:0.76
Consensus pattern (27 bp):
TTATTTTTATTTTTATTTATTTTCCTT
Found at i:4933084 original size:59 final size:58
Alignment explanation
Indices: 4933000--4933340 Score: 411
Period size: 59 Copynumber: 5.7 Consensus size: 58
4932990 AAAAGTTCCA
* * *
4933000 AAAAAAATACTTTTGGGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAATTTTC
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT--AAATTTTC
* * * *
4933060 -GAAAAATATTTTTAGGAAAAAGTTGAAAGTATCCATTTTCCTTAAAAATAAATTTTC
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTTC
*
4933117 AAAAAAAAAAAGGGATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTTTG-AAATAAATTTT
1 ----AAAAAAA--TATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCC-TTGAAAATAAATTTT
4933180 C
58 C
* *
4933181 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCC
1 -AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT--AAATTTTC
* *
4933242 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTC
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTTC
* *
4933299 CAAAAAATATTTTTAGGGAAAAGTTGAGAGTATCAATTTTCC
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
4933341 CTACACAAAA
Statistics
Matches: 249, Mismatches: 19, Indels: 29
0.84 0.06 0.10
Matches are distributed among these distances:
57 50 0.20
58 6 0.02
59 78 0.31
60 50 0.20
61 15 0.06
62 5 0.02
63 1 0.00
64 42 0.17
65 2 0.01
ACGTcount: A:0.44, C:0.09, G:0.13, T:0.34
Consensus pattern (58 bp):
AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTTC
Found at i:4933150 original size:123 final size:117
Alignment explanation
Indices: 4932982--4933340 Score: 461
Period size: 123 Copynumber: 3.0 Consensus size: 117
4932972 TTTCTTTAAA
* * * *
4932982 TAAAAATCAAAAGTTCCAAAAAAAATACTTTTGGGGAAAAGTTGAAAGTATCAATCTTCCTTGAA
1 TAAAAATCAAAA-TTTCAAAAAAAAGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAA
* * *
4933047 AATCAAAATTTTCGAAAAATATTTTTAGGAAAAAGTTGAAAGTATCCATTTTCCT
65 AAT--AAATTTTCAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
* *
4933102 TAAAAAT-AAATTTTCAAAAAAAAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAAATTTC---AAAAAAAA--GATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC-
*
4933166 TTG-AAATAAATTTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
60 TTGAAAATAAATTTTC--AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
* * * *
4933225 TGAAAATCAAAATTTCCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
1 TAAAAATCAAAATTTCAAAAAAAAGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAA
* *
4933290 ATAAATTTCCAAAAAATATTTTTAGGGAAAAGTTGAGAGTATCAATTTTCC
66 ATAAATTTTCAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
4933341 CTACACAAAA
Statistics
Matches: 210, Mismatches: 19, Indels: 23
0.83 0.08 0.09
Matches are distributed among these distances:
117 39 0.19
118 5 0.02
119 47 0.22
120 7 0.03
121 23 0.11
123 79 0.38
124 10 0.05
ACGTcount: A:0.45, C:0.09, G:0.13, T:0.33
Consensus pattern (117 bp):
TAAAAATCAAAATTTCAAAAAAAAGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAA
ATAAATTTTCAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:4934957 original size:26 final size:26
Alignment explanation
Indices: 4934921--4934973 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4934911 CTGGTTTGAT
4934921 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4934947 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4934973 C
1 C
4934974 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4936894 original size:258 final size:259
Alignment explanation
Indices: 4936434--4936935 Score: 749
Period size: 258 Copynumber: 1.9 Consensus size: 259
4936424 TCAAGGTTTG
*
4936434 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCGCACAC
1 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * **
4936499 CCACCCCCGGCCCACCCGATCGTCGGAACCCCAATGTCGTTGGTCAGGTTCTCCGGCGATGCTCC
66 CCACCCCCGACCCACCCGATCGTCGAAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCC
* * *
4936564 GACGATGGTGCCCCGGCGAAGAAAAATACAGCACCAGCACATGCCCGAGCCTAGTATGTGCTACC
131 GACGATGGTGCCCCGACAAAGAAAAATACAGCACCAGCACATGCCCGAGCCTAGCATGTGCTACC
** *
4936629 ACAACCCTCGGTCTGGAT-CGATTTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATTC
196 ACAACCCTCGGTC-CAATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATTC
*
4936693 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACAC
1 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * *
4936758 CC-CTCCCGACCCCCCCGTTCGTCGAAACCCCAATG-CTGCCGGTCAGGTTCTCCGGCGATGCTC
66 CCACCCCCGACCCACCCGATCGTCGAAACCCCAATGTC-GCCGGTCAGGTTCTCCGGCGATGCTC
** * * * *
4936821 CGGTGATGGTGCCCCGATAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGC
130 CGACGATGGTGCCCCGACAAAGAAAAATACAGCACCAGCACATGCCCGAGCCTAGCATGTGCTAC
* * *
4936886 CGCAACCCTCGGTCCAATCCGATCTTAGATTGGGAATGAACTCCGTATGC
195 CACAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGCATGC
4936936 CTAAGATTAC
Statistics
Matches: 217, Mismatches: 24, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
257 3 0.01
258 149 0.69
259 65 0.30
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (259 bp):
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
CCACCCCCGACCCACCCGATCGTCGAAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCC
GACGATGGTGCCCCGACAAAGAAAAATACAGCACCAGCACATGCCCGAGCCTAGCATGTGCTACC
ACAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATTC
Found at i:4940703 original size:26 final size:26
Alignment explanation
Indices: 4940667--4940719 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4940657 CTGGTCTGAT
*
4940667 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
4940693 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
4940719 C
1 C
4940720 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:4941816 original size:903 final size:903
Alignment explanation
Indices: 4939822--4946083 Score: 8030
Period size: 893 Copynumber: 7.0 Consensus size: 903
4939812 ACTGGTTAAT
* * *
4939822 GAATGAACTCCGTATGCCTAAGTCAACCCAC-AAA-TAGCGTGC--GCGCTCA-CCGACCAG-GG
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * *
4939881 GG-GCGATGCACAAG-C-GGAATC-GC-CGGGTCCCTCTCTG-GTG---CCGATCCTACTACC-C
66 GGCGGGATGCGCAAGCCGGGGATCGGCTCGGGTCCCCCTCTGCGTGCTACCAATCCTGCTACCGC
* * * **
4939936 AACCCTCAGTCCTCGTCCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGATAAA
131 AACCCTCAGT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
4940001 ACAAGAC--GCTGGCAGGC--A-GGCGGC-ACGCC-GCCAGAGAG-CGGGATGCG-AAGCCGTGG
195 ACGAG-CGGGCGGGCGGGCGGAGGGC-ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
4940057 ATCGATA-AGAGGTAGGGTGGGTTTA-GCACATCTTCATATTTCTGGCAATGCTCAATGCCATTT
258 ATCGATAGGGTGGTA-GGTGGGTTTAGGCACATCTTCATATTTCTGG--ATGC-CAATGCCATTT
* * * *
4940120 GTATGG-TTGTAAATTCATACAATGGTCCTTTAAGCCTCCACGTGAACTTTCATGGCAAGACGAC
319 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * *
4940184 TCGTTTTTTATTTTTCACGATTTTTAAAACCTTTT-ACGGTTCAGGATTTTTTAAAATTTTTTTG
384 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGA-GGTTCGGGATTTTTTAAAATTTTTTCG
4940248 AAAGGG-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
448 AAAGGGATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
4940312 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
513 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
4940377 ACTCTTTAATGGCTACTGGCCGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
578 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* ** *
4940442 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAAAGCCAAGTACCAGCACCCATCGCACATCT
643 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
4940507 TGTGCGAACA-CCCCCCGGCCCCTCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTTCGA
708 TGTGCGCACACCCCCCCGGCCCC-CCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGG
* ** * *
4940571 CGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCATC-AGCCAAGC
772 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC-CCGAGCCCAGC
* * * *
4940635 ATGTGCTACCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
836 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
4940700 TGG
901 TGG
* * ** * *
4940703 GAATGAACTCCGCATGCCTAAGTCAACCCATGAAACGATTGTACGGGCACTCAGCCGGCCAGAGG
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGG
** * * * ** **
4940768 GGCGGGATAAGCAAGCTGAGGATCGGC-CGGGTCCCCTTCAACGTGCT-GTAGATCCTGCTACCG
66 GGCGGGATGCGCAAGCCGGGGATCGGCTCGGGTCCCCCTCTGCGTGCTACCA-ATCCTGCTACCG
* * * *
4940831 CAACCGTTAGTCTGGTCTGATCTTTGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
130 CAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* ** * * * * * *
4940896 ATGAGTAGACAGGCGGGCGGGAGGGCGCTACGTCGGCCAGAGAGACAGGATGCGCAAGCTGTGGA
195 ACGAGCGGGCGGGCGGGC-GGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
4940961 TCGATAGGGTGGCAGGTGGGTTTAGACACATCTTCATATTTCTGGATGCCAAGGCCATTTTTATG
259 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGGATGCCAATGCCATTTTTATG
* *
4941026 GCTTGTAAATTCATACAATGGTCCCTTAATCCTTCACATGAAGTTTCATGGCAAGACGACTCGTT
324 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* *
4941091 TTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATGTTTTAAAATTTTTTTGAAAGGG
389 TTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGG
* *
4941156 GTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
454 ATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
*
4941221 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTT
519 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
4941286 TAATGGCTACTGGGAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTGCTCGAG
584 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * * *
4941351 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTAGCAGCACCCATCACACATCATGTGTG
649 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * *
4941416 CACACCCCCCCGACCCCCTCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCTGGCGATGC
714 CACACCCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGC
* * * ** *
4941481 TCAGGCGATGGTTCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGGGCT
778 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * * * * * * * *
4941546 GTCGTAACCTTTGGTCCAGTCTGATCATAGACTAGGAATGAACTCCATAAGCTTAGACTGG
843 GCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * * ** *
4941607 GAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAACATGTGGGTGCTCAACTAGCTAGAGG
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGG
* * ** * *
4941672 GGCGGGATGC-CAAGCCGGGGACCGGCT-GGGTCCCCCTCTGCATGCTGTCAATCCTACTGCCGC
66 GGCGGGATGCGCAAGCCGGGGATCGGCTCGGGTCCCCCTCTGCGTGCTACCAATCCTGCTACCGC
* ** * * * *
4941735 AACCCTCGGTCAAGTCTGATCTAAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA
131 AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* *
4941800 CGA----GCGGGCGGGC---GGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATC
196 CGAGCGGGCGGGCGGGCGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * * *
4941858 AATAAGGTGGTAGGTCGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
261 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGGATGCCAATGCCATTTTTATGGC
*
4941923 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTT
326 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * *
4941988 CTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGCAT
391 CTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGGAT
* *
4942053 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTGTTGGCTTGCACCAAAAAATTCAGCT
456 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
*
4942117 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTA
521 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * *
4942182 ATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGT
586 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
4942247 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACA
651 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * *
4942312 CA-CCCCTCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
716 CACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCC
* * *
4942376 GACGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACC
781 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * * * * * *
4942441 GTAACCCTCGATCCAGTCCGAGCTTAGACTAGGAATGAACTCCGTATGCTTAGATTAG
846 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * *
4942499 GAATGAACTCCGTATGCCTAAGTCAACCCACGAATCGAGCGTCCGGGCGCTCAGCCGACCAGAAG
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * *
4942564 GGCAGGATGCTCAAGCCGGGGATCGG-TCGGGTCCCCATCTGCGTTCTACCAATCCT-CTTATCG
66 GGCGGGATGCGCAAGCCGGGGATCGGCTCGGGTCCCCCTCTGCGTGCTACCAATCCTGC-TACCG
* * * * * *
4942627 TAACCCTCAATCTGGTCTGATCTTTGACTGGAAATGAACTCCGTATGCCTAAGCCAATCGACGAA
130 CAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
4942692 ATGAGC-GGC---CGGGC---GGGCACTATGCCAGCCAGAGAGACGGGATGCGCAAGTCATGGAT
195 ACGAGCGGGCGGGCGGGCGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* ** * *
4942750 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTACATGCCAATGCAATTTTTCTGG
260 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGGATGCCAATGCCATTTTTATGG
* *
4942815 CTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGGCGACTCGTTT
325 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * *
4942880 TCTATTTTTCATGATTTTTGAAACATTTT-ACGGTTTGGGATTTTTTAAAATTTTTTCGGAA-GG
390 TCTATTTTTCACGATTTTTGAAACTTTTTGA-GGTTCGGGATTTTTTAAAATTTTTTCGAAAGGG
* * * *
4942943 ATTTTTGGCCCCAAACTTGGTACAAGTGATCCTTGTATTTTTTTTGGTATGCACAAAAAAATTCA
454 A-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
4943008 GCTAAAAACTCGAAGTGTACAAGA-CTTGTGACCATTTGAAAAAAATGTCCCCATTTTAGACACT
518 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
** *
4943072 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGACGGTGTGAGTTCTCAA
583 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
4943137 GGTTTGATGAGGGGTAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCGCACATCATGTGC
648 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * *
4943202 GCACACCCCCCGGGCCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCTGTCGATGC
713 GCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGC
* * ** *
4943267 TCCCG-CGATGGCGCCCTGACGAAGAAAAATGTTGCACTAGCACATGCCCGAGCCCAGCATGTGC
778 T-CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * *
4943331 AGCTGGAACCCTCAGCCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
842 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
**
4943393 GAATGAACTCCGTATGCGAAAGTCAACCCACGAAACG-A-------GCG-T-A--C-G---GA--
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGG
* * * ** *
4943440 --CGGGATGCGTAAGCTGGGGATCGG-TCGGATCCCCCTCTATGTGCTACCAATCCTGCTACCGT
66 GGCGGGATGCGCAAGCCGGGGATCGGCTCGGGTCCCCCTCTGCGTGCTACCAATCCTGCTACCGC
* * *
4943502 AACCCTC-GATCTGCTCCAATCTTAGATCAGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
131 AACCCTCAG-TCTGGTCCGATCTTAGA-CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
4943566 AACGAGCGAGCGGGCGGGCGGACGGGTACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGG
194 AACGAGCGGGCGGGCGGGCGGA-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
4943631 ATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTACG-TGCCAATGCCATTTTTG
258 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GGATGCCAATGCCATTTTTA
*
4943695 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCA
322 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* ** * *
4943760 TTTTCTATTTTTCATGATTTTTGAAACTTTTTCTGGTTCGAGATTTTTTAAAATTTTTTCGAACG
387 TTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAATTTTTTCGAAAG
** * * *
4943825 AAATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGTATGCAAAAAAAAATTC
452 GGATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
4943890 AGCTAAAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
517 AGCT---AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * ** *
4943955 CACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCAGTTTAAGGGGGTGTGAGGTC
579 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * *
4944020 TTGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCACACATCAT
644 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
** * **
4944085 GTGCGCACACCCCCCCACGGCCCCCCCGATCGTCAAAACCCCAATGCCACCGATCAGGTTCAACG
709 GTGCGCACA-CCCCCC-CGG-CCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCG
* * * * *
4944150 GTGATGCTCCGACGATGGTGCCCCGACAAAGAAAATTACGGCACCAGCACATTCCCGAGCCCAGC
771 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
4944215 ATGTGCTGCCGCAACCCTTGGTTCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAA
836 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
4944280 TGG
901 TGG
* * * **
4944283 GTATGAACTCCGTATGCCTAAGTCAACCCACAAAACGACCGTGCGGGTTCTCAGCCGGCCAGAGG
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * **
4944348 GGCGGGATGCGCAAGCCGGGGATC-GATCGGGTCCCCCTCTGCATGCTACCGATGCTGCTGCTAC
66 GGCGGGATGCGCAAGCCGGGGATCGGCTCGGGTCCCCCTCTGCGTGCTACCAATCCTGCTACCGC
* * * *
4944412 AACCCTCAGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACAAAA
131 AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * *
4944477 AGAGCGGGTGGGCAGGCGG-GCTGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGACGTGGA
196 CGAGCGGGCGGGCGGGCGGAG--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * * *
4944541 TCGATAGGGTGGTAGGCGGGTTTAGGTACATCTTTATATTTTTGTG-TGCCAATGCCATTTTTAT
259 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-GATGCCAATGCCATTTTTAT
* * *
4944605 GGCTTGTAAATTCATACAATGGTCCCTTAAGCGTTCACATGAAGTTTCATGGCAAGACGACTCCT
323 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * ** *
4944670 TTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAAATTTTTTAAAATTTTTTCGGAA-G
388 TTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAATTTTTTCGAAAGG
* *
4944734 GATTTTTGGCCCGAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
453 GA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
4944799 AGCTAAAAACTCGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCCGACAC
517 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
4944864 TTTAATGGCTACTGGCAGGAAACCTGTAAAATCTCAAATGCTGTTTAA-GGGGTGTGAGTTCTCG
582 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
4944928 ATGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGCACATCATGTG
647 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* **
4944993 CGCACACCCCCCCGGCCCCCCGATCGTCGGAGCCCCAATGCCGTCGGTCAGGTTCTCCGGCGATG
712 CGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATG
*
4945058 CTCCGACGATGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
777 CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * *
4945123 TGCCACAACCCTCGGTCTGGTCCGATCCGATCTTAGACTAGGAATGAACTCTGTATGCGTAGACT
842 TGCCGCAA-CC-C--TC-GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
4945188 GG
902 GG
* * * * *
4945190 GAATGAACTCTGTATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAAAGG
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGG
* * ** * * * * *
4945255 GGCGGGATGCGTAAACCGAAGATCGAC-CGGGTCCCCCTCTGCGTGCTACCGATCATGCTGCTGC
66 GGCGGGATGCGCAAGCCGGGGATCGGCTCGGGTCCCCCTCTGCGTGCTACCAATCCTGCTACCGC
* * * *
4945319 AACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
131 AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
** * * * *
4945384 CGAGCGGGCGGGCGGTAGGCGGGCATTACGCCAGCCAGAGAGATGGGATGCGCAAGCCGTGGATC
196 CGAGCGGGCGGGCGGGCGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * *
4945449 GATAGGGTGGTAGGTGGGTTTAAGCATATCTTCATATTT-GGGCATGCCAATGCCATTTTTATGG
261 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGG-ATGCCAATGCCATTTTTATGG
* * * *
4945513 CTTGTAAATTCATGCAGTGGTCCCTTAAGCCTTCACCTGAGGTTTCATGGCAAGACGACTCGTTT
325 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * *
4945578 TCTAATTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAA-GGA
390 TCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGGA
* * * *
4945642 GTTTTGGCTCCAAACTCGGTAGACATGATCATTGTATTATTT-TTGGCATGCACAAAAAAATTCA
455 -TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT-TTTGTTGGCATGCACAAAAAAATTCA
* * * *
4945706 GCTAAAAACTTGAAGTGTACAAAATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTTAGACACT
518 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
4945771 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-CGGGTGTGAGTCCTCGA
583 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
4945835 GATTTGATGAGGGATAAGGGGGCCAATATAAGGGCCAAGTACCCA-CACCCATTGCACATCATGT
648 GGTTTGATGAGGGAT-AGGGGGCCAATATAAGGGCCAAGTA-CCAGCACCCATCGCACATCATGT
* * *
4945899 GCGCACACCCCCCCGGCCCCCCCGATCGTCGGAAGCCCAATGCCATCGGTCAGGTTCTCCGGGGA
711 GCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGA
* * * * * * **
4945964 TGCTTCGACGAAGGTGCCCCGATGAAGAAAAATGTGGCACCAGCCCATGCCCAAGCCTGGCATGT
775 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
*
4946029 GCTGTCC-CAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
840 GCTG-CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
4946084 CTAAGCCAAT
Statistics
Matches: 4705, Mismatches: 568, Indels: 194
0.86 0.10 0.04
Matches are distributed among these distances:
874 70 0.01
875 41 0.01
876 2 0.00
878 2 0.00
879 5 0.00
881 29 0.01
882 4 0.00
883 279 0.06
884 2 0.00
885 7 0.00
886 31 0.01
887 162 0.03
888 14 0.00
889 5 0.00
890 184 0.04
891 12 0.00
892 216 0.05
893 521 0.11
894 453 0.10
895 315 0.07
896 18 0.00
898 1 0.00
899 12 0.00
900 8 0.00
901 24 0.01
902 237 0.05
903 414 0.09
904 255 0.05
905 80 0.02
906 503 0.11
907 287 0.06
908 112 0.02
909 328 0.07
910 71 0.02
911 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (903 bp):
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGG
GGCGGGATGCGCAAGCCGGGGATCGGCTCGGGTCCCCCTCTGCGTGCTACCAATCCTGCTACCGC
AACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CGAGCGGGCGGGCGGGCGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGGATGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGGAT
TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCC
GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
Found at i:4942491 original size:26 final size:26
Alignment explanation
Indices: 4942462--4942515 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
4942452 TCCAGTCCGA
4942462 GCTTAGACTAGGAATGAACTCCGTAT
1 GCTTAGACTAGGAATGAACTCCGTAT
*
4942488 GCTTAGATTAGGAATGAACTCCGTAT
1 GCTTAGACTAGGAATGAACTCCGTAT
4942514 GC
1 GC
4942516 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (26 bp):
GCTTAGACTAGGAATGAACTCCGTAT
Found at i:4943386 original size:26 final size:26
Alignment explanation
Indices: 4943357--4943409 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4943347 CCGGTCCGAT
4943357 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4943383 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4943409 C
1 C
4943410 GAAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4944283 original size:26 final size:26
Alignment explanation
Indices: 4944247--4944299 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4944237 TCGGTTCGAT
*
4944247 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
4944273 CTTAGAATGGGTATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
4944299 C
1 C
4944300 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:4946794 original size:719 final size:718
Alignment explanation
Indices: 4945310--4946802 Score: 2190
Period size: 719 Copynumber: 2.1 Consensus size: 718
4945300 CTACCGATCA
* *
4945310 TGCTGCTGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * *
4945375 CCGACGAAACGAGCGGGCGGGCGGTAGGCGGGCATTACGCCAGCCAGAGAGATGGGATGCGCAAG
66 CCGACGAAACGAGCGGGCGCACGGCAGGCGAGCACTACGCCAGCCAGAGAGACGGGATGCGCAAG
* * * *
4945440 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAAGCATATCTTCATATTTGGGCATGCCAATGCCAT
131 CCGTGGATCAATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCGACATGCCAATGCCAT
* * *
4945505 TTTTATGGCTTGTAAATTCATGCAGTGGTCCCTTAAGCCTTCACCTGAGGTTTCATGGCAAGACG
196 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACG
** * * * *
4945570 ACTCGTTTTCTAATTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTT
261 ACTCGTTTTCTAATTTTCATGATTTTCAAAAATTTTTACGGTTCGAGAGTTTTTAAAATTTTTTC
* *
4945635 GAAAGGAGTTTTGGCTCCAAACTCGGTAGACATGATCATTGTATTATTTTTGGCATGCACAAAAA
326 GAAAGGAGTTTTGGCCCCAAACTCGGTAGACATGATCATTGTATTATTTTTGGAATGCACAAAAA
* * * *
4945700 AATTCAGCTAAAAACTTGAAGTGTACAAAATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTTA
391 AATTCAGCTAAAAACTTGAAGAGTACAAAATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCA
* * *
4945765 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAACGGGTGTGAGTC
456 AACACTTTAATGGCTACTGGCAACAAACCTCTAAAATCTCAAATGCTCTTTAACGGGTGTGAGTC
* * *
4945830 CTCGAGATTTGATGAGGGATAAGGGGGCCAATATAAGGGCCAAGTACCCACACCCATTGCACATC
521 CTCAAGATTTGATGAGGGATAAGGGGGCCAATAGAAGGGCCAAGTACCCACACCCATCGCACATC
* *
4945895 ATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAAGCCCAATGCCATCGGTCAGGTTCTCCG
586 ATGTGCACACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCG
* * * * **
4945960 GGGATGCTTCGACGAAGGTGCCCCGATGAAGAAAAATGTGGCACCAGCCCATGCCCAAGCCTGGC
651 GCGATGCTCCGACGAAGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGC
4946025 ATG
716 ATG
4946028 TGCTGTCC-CAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTG-CCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
4946092 ATCGACGAAACGAGCGGGCGCACGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCA
65 ACCGACGAAACGAGCGGGCGCAC-GGCAGGCGAGCACTACGCCAGCCAGAGAGACGGGATGCGCA
* * *
4946157 AGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTACATGCCAATGCC
129 AGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCGACATGCCAATGCC
** *
4946222 ATTTTTATTTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
194 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGA
* *
4946287 CGACTCGTTTTCTATTTTTCATGATTTTCAAAAATTTTTACGATTTCG-GAGTTTTTAAAATTTT
259 CGACTCGTTTTCTAATTTTCATGATTTTCAAAAATTTTTACG-GTTCGAGAGTTTTTAAAATTTT
* * * *
4946351 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATT-TTTATTGTAATGCACA
323 TTCGAAAGGAGTTTTGGCCCCAAACTCGGTAGACATGATCATTGTATTATTT-TTGGAATGCACA
*
4946415 AAAAAATTCAGCTAAAAAACTTGAAGAGTAC-AAGTTTTGTGACCATTTGAAAAAAGTGCCCCCA
387 AAAAAATTCAGCT-AAAAACTTGAAGAGTACAAAATTTTGTGACCATTTGAAAAAAGTGCCCCCA
*
4946479 TTTCAAACACTTTAATGGCTACTGGCAACAAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGTG
451 TTTCAAACACTTTAATGGCTACTGGCAACAAACCTCTAAAATCTCAAATGCTCTTTAA-CGGGTG
* * * *
4946544 TGAGTTCTCAAGGTTTGATGAGGGAT-AGGGGGCCAATAGAAGGGCTAAGTA-CCAGCACTCATC
515 TGAGTCCTCAAGATTTGATGAGGGATAAGGGGGCCAATAGAAGGGCCAAGTACCCA-CACCCATC
* * *
4946607 GCACATCATGTGCACACAGCCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
579 GCACATCATGTGCACACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGG
* * *
4946672 TTCTCCGGCGATGCTCCGGC-AATGGTGCCTCGACGAAGAAAAATGTGGCACCAGCACATGCCCG
644 TTCTCCGGCGATGCTCCGACGAA-GGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCA
4946736 AGCCCAGCATG
708 AGCCCAGCATG
* * ** * *
4946747 TGCTGCCGTAACCCTCTGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGC
1 TGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
4946803 TTAGACTGGG
Statistics
Matches: 691, Mismatches: 75, Indels: 17
0.88 0.10 0.02
Matches are distributed among these distances:
718 90 0.13
719 553 0.80
720 48 0.07
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (718 bp):
TGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGCACGGCAGGCGAGCACTACGCCAGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCAATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCGACATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTAATTTTCATGATTTTCAAAAATTTTTACGGTTCGAGAGTTTTTAAAATTTTTTC
GAAAGGAGTTTTGGCCCCAAACTCGGTAGACATGATCATTGTATTATTTTTGGAATGCACAAAAA
AATTCAGCTAAAAACTTGAAGAGTACAAAATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCA
AACACTTTAATGGCTACTGGCAACAAACCTCTAAAATCTCAAATGCTCTTTAACGGGTGTGAGTC
CTCAAGATTTGATGAGGGATAAGGGGGCCAATAGAAGGGCCAAGTACCCACACCCATCGCACATC
ATGTGCACACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCG
GCGATGCTCCGACGAAGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGC
ATG
Found at i:4946805 original size:26 final size:26
Alignment explanation
Indices: 4946776--4946828 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4946766 CCGGTCTGAT
*
4946776 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
4946802 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
4946828 C
1 C
4946829 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:4947799 original size:26 final size:26
Alignment explanation
Indices: 4947770--4947822 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4947760 CCGGTTTGAT
*
4947770 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4947796 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4947822 C
1 C
4947823 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4948713 original size:26 final size:26
Alignment explanation
Indices: 4948662--4948714 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4948652 ATGGTCCGAT
*
4948662 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
4948688 CTTAGACTTGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
4948714 C
1 C
4948715 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:4949602 original size:26 final size:26
Alignment explanation
Indices: 4949564--4949616 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
4949554 CCGGTCCGAT
* * *
4949564 CTTAGACTGGGAAAGAACTCCTTATG
1 CTTAGACTAGGAAAGAACCCCGTATG
*
4949590 CTTAGACTAGGAATGAACCCCGTATG
1 CTTAGACTAGGAAAGAACCCCGTATG
4949616 C
1 C
4949617 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACCCCGTATG
Found at i:4950039 original size:901 final size:902
Alignment explanation
Indices: 4947350--4953178 Score: 7246
Period size: 892 Copynumber: 6.5 Consensus size: 902
4947340 ACCATTTGTC
* * *
4947350 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGTCGTGATCCTTGTATTTTTGATGGCATGCAC---
1 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
*
4947412 ---A---A---AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTT
66 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
** * * *
4947468 CAGACACTTTCTTGGCTACTGGCGGCAAACCTGTAAAATCTCAAATGCCCTTTAAAGGGGTGTGA
131 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
4947533 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
196 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*
4947598 TCATGTGCGCACACCCCCCGACCCCCCCGACCCCTCTGATCACCGGAACCCCAATGCCGTCGGTC
261 TCATGTGCGCACACCCCCCGGCCCCCCCGA----TC-G-T---CGGAACCCCAATGCCGTCGGTC
* ** * * *
4947663 AGGTTCTACGATGATGCTCCGATGATGGTACCCTGACAAAGAAAAATGCGGCACCAGCACATAG-
317 AGGTTCTCCGGCGATGCTCCGGTGATGGTGCCC-GACGAAGAAAAATGCGGCACCAGCACAT-GC
* * ** *
4947727 CCGAGCCTAGCATGTGCTACCGCAACCCTCAGTCCGGTTTGATCTTAGACTTGGAATGAACTCCG
380 CCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
* * *
4947792 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGTCGTT
445 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCT
* * ** * ** *
4947857 CAGCCGGCTAGAAGGTTGGGATGTGCAAGTCAAGGATCG-GCCGGGTCCCCCTCTGCGTGCTGCC
510 CAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCCGGGTCCCCCTCTGCGTGCTGCC
* * *
4947921 GATCCTGCTGCCGCAACCCTCGGTCAGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAA
575 GATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
4947986 GCCAACCGATGAAACGAGCGGGC-AGACAGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGAT
640 GCCAACTGACGAAACGAGCGGGCGAG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
* *
4948050 GCACAAGCCGTGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCA
704 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCA
* * * * *
4948115 ATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTGAGCCTTGATGTGAAGTTTCGTGG
769 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* *
4948180 CAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAA
834 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG-TTCGGATTTTTTAAAA
4948245 TTTTT
898 TTTTT
* * * * *
4948250 TCGGAAGGAGTTTTGTCCCCAAACTTGGTAGACGTGATCCTTGTCTTTTTTTTCGCATGCACAAA
1 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAC-AA
*
4948315 AAGAAATTCAGCTAAAAACTCGAAGTGTACAAGA-CTTGTGACCATTTGAAAAAAGTGTCCCCAT
65 AA-AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
4948379 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
129 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
4948444 GAGTTCTCGAGGTTTGATGAGGAATAGGGGGCAAATATAAGGGCCAAGTACCAGTACCCATCGCA
194 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * * *
4948509 CATCATGCGCGCACACCCCCCGGCCCCCCCAATCGTCGAAACCCCAATACTGCCGGTCAGG---T
259 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
** * *
4948571 -------T-CTCCGGTGATGGTGCCCGGTGAAGAAAAATGCGACACCAGCACATTCCCGAGCCCA
324 CCGGCGATGCTCCGGTGATGGTGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * ** *
4948628 GCATGTGCTGTCGCAACCCTCGGTATGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAG
389 GCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* ** * *
4948693 ACTTGGAATGAACTCTATATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCGCTCAGCAGGCC
454 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * *
4948758 AGAGGGGCGGGATGCACAAGTCGGGGATCGA-CTGGGTCCCCCTCTGTGAGCTGCCGAACCTACT
519 AGAGGGGCGGGATGCGCAAGTCGGGGATCGATCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* * * * * * * * * *
4948822 ACCACGACCTTTGGTCTGGTCTGGTCATAGACTGGGAATGAACTCTGTATGACTAAGCCAAAC-G
584 GCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC-AACTG
* * * * ** * **
4948886 ACAAAATGAGCGGGCGAGCGGGTGGACGGGCACTACGCCTCCCAGAGAGGCATGATGCGCAAGCC
648 ACGAAACGAGCGGGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
4948951 GTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTGCTGCGTGCCAGTGCCATTT
713 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
*
4949016 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGAC
778 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
4949081 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAGGGTTCAGGATTTTTTAAAATTTTT
843 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTT
* * *
4949142 TTGGAAGGAGTTTTGGCCCAAAACTTGGTAGACATGATCCTAGTATTTTTGTTGGCATGCACAAA
1 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
4949207 AAAATTCAGCTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTT
66 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
4949272 CAGACACTTTAATGGC-ACTGGCAGCAAACCTGTAAAATCTCAAATGCT-TTTCAAGGGGGTGTG
131 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTG
* *
4949335 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATACAAGGGCCAAGTACCAGCACCCATCGCAC
195 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
4949400 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTAGGAACCCCAATGCTGTC-ATACAGGTTGT
260 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGT-CAGGTTCT
* * * * *
4949464 CCGGCAATGC-CCTGGCGATGGTGCCTCGGCGAAGAAAAATGCGGCACTAGCACATGCCTGAGCC
324 CCGGCGATGCTCC-GGTGATGGTGCC-CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * *
4949528 CAGCATGTGCTGTCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAAAGAACTCCTTATGCTT
387 CAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * *
4949593 AGACTAGGAATGAACCCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACGGG
452 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGG
* * * * * *
4949658 CCAGAGGGGTGAGATGCGTAAGCCGGGGATC-ATCCGGGTCCCCCTATGCGTGCTGCCGATCCAG
517 CCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
*
4949722 CTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT
582 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT
* * *
4949787 GACGAAATGAGC-GGCGAGCGGGCGGGCGGGCACTACGCGGGCCAGAGAGGCGGGATGCGCAAGC
647 GACGAAACGAGCGGGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * * *
4949851 CGTGGATAGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTGCTGCGTGCCAATGCCACT
712 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
* * *
4949916 TTTATGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATAGCAAGACGA
777 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* ** * *
4949981 CTCGTTTTCTATTTTCCATAATTTTTGAAACATTTTACGATTCAGGATTTTTTAAAATTTTT
842 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTAAAATTTTT
* * *
4950043 TCGGAAGGAGTTTCGGCCCCAAACTTGGTAGACATCATCCTTGTATTTTTGTTGGCATGTACAAA
1 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
4950108 AACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGTG-CCCCATTT
66 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
4950172 CAGACACTTTAATTGCTACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
131 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
4950237 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
196 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
4950302 TCATGTGCGCACACCCCCCACCGGCCCCCCCTATCGCCGTAACCCCAATGCCATCAGTCAGGTTC
261 TCATGTGCGCACA--CCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * * * *
4950367 TCCGGTGATGGTCCGGTGATGGTGCCCCGATGAAGAAAAGTACGGCACCAGCACATGCCTGAGCC
323 TCCGGCGATGCTCCGGTGATGGTG-CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * * **
4950432 CAACATGTGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCAAATGCTT
387 CAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
*
4950497 AGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGG
452 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGG
* * * *
4950562 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGT-CGGGTCCCTCTCTGCGTGCTACCGATCCTG
517 CCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* * ** **
4950626 CTTCCGCAACCCTCGATGTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT
582 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT
* * * ** * * * * **
4950691 GACGAAACGAGCGGGCGGGCAAACAGCCGGGCGGAAACTGCACCGGCTAGAGAGACGAGATAAGC
647 GACGAAACGAGCGGGC--G--AGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* *
4950756 AAGCCATGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
708 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
* * * *
4950821 TATTTTTATGGCTTGAAAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAA
773 CATTTTTATGGCTTG-TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
4950886 GACGACTCGTTTTTTATTTTTCACAATTTTTGAAACATTTTACGGTTCGGGATTTTTTTAAATTT
837 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTAAAATTT
4950951 TT
901 TT
* * * * *
4950953 TTGGAAGAATTTTTGGCCCCAAAATTGGTAGA-AGTGATCCTTGTATTTTTGTTGGCATGCATAA
1 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACA-TGATCCTTGTATTTTTGTTGGCATGCACAA
*
4951017 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATT
65 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
4951082 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCGAATGCTCTTTAAGGGGGTGTG
130 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * * * *
4951147 AGTTCTCAAGGTTTGATAAGGCACAGGGGGCCAATATAAGTGCCAAGTACCAGCACCCATCACAC
195 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * **
4951212 ATCATGTGCGAACACCCCAACGGCCCCCCCGATCG-CTGGAACCCCAATGCCACCGGTCAGGTTC
260 ATCATGTGCGCACACCCC-CCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTC
** * *
4951276 AACGGCGATGCTCCGGTGATGGTGCCTCGGCGAAGAAAAATGCGACACCAGCACATGCCCGAGCC
323 TCCGGCGATGCTCCGGTGATGGTGCC-CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * *
4951341 CAGCATGTGCTGCCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTT
387 CAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * * * *
4951406 AGACTGGGTATGAACTCCATATGCCCAAGTCAACCCA-AAAAAGACCATGCGGGCGCTCAGCCGG
452 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGG
* * * * * * *
4951470 CTAGAGAGGCCGGATGCGAAAGTCGGGGATTGA-CCGGGTCCCCCTTTACGTGCTGCCGATCCTG
517 CCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
** * * * * * *
4951534 CTGTGGTAACCCTCGGTCTGGTCTAATTTTAGACTGGGAATAAACTGCGTATGCCTAAGCCAACT
582 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT
* * *
4951599 GACGAAAAC-AGCGGGTGGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
647 GACG-AAACGAGCGGGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
4951663 CCGTGGATCGATAGGGTGGTAGGCGGGTTTAGGCACATCTTCATATTTC-AGTGTGCCAATGCCA
711 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA-CGTGCCAATGCCA
* * *
4951727 TTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCGTTCACGTGAAGTTTCATGGCAAGAT
775 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
4951792 GACTCGTTTTCTA-TTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATCTTT
840 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCG-GATTTTTTAAAATTTTT
* * * * * * ** *
4951855 TCGAAAGGATTTTTAGACCCAAAGTTGGCAGATGTGATCCTTGTATTTTTCTTGGCATGCACAAA
1 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
4951920 AGAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTT
66 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
4951985 CAGACACTTTAATGGCTAGTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAACGGGGTGTGA
131 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
4952050 GTTCTCAAGATTTGATGAGGGATAAGGGGGCCAATAGAAGGGCCAAGTACCAGCATCCATCGCAC
196 GTTCTCGAGGTTTGATGAGGGAT-AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * **
4952115 ATCATGTGCACACACCCCCCCGACCACCCCGAACACCGGAACCCCAATGCCGTCGGTCAGGTTCT
260 ATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* *** * * *
4952180 CCGACGATGCTCCAACGACGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCT
324 CCGGCGATGCTCCGGTGATGGTG-CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* ***
4952245 AACATGTGCCATCGCAA-CC-C--T-C-G---G----T---C------TG-A-TCCG-AT-CTTA
388 AGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * ** ** *
4952284 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGATCGTACGAACATTCAGTCGGC
453 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGC
* * * * * * *
4952349 CAGAGGGGCGGGATGCACAAGTCGGGGATCGGT-CTGGTCCCCTTCTGCATACTGTCGA-CCTTG
518 CAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCCGGGTCCCCCTCTGCGTGCTGCCGATCC-TG
* * * * ** * *
4952412 CTACCACAACCCTC-GACCGATCTGATCTTAGACTGAAAATGAACCCCGTATGCCTAAGCCACCC
582 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA-AC
* * * * ** * *
4952476 T-ATGAAACGAGCGGGTGGGTGGGCGGGCGGGCACTACGTTGACTAGAGAGACGGGATGCGCAAG
646 TGACGAAACGAGCGGGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
4952540 CCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
711 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
* *
4952605 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGATG
776 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
4952670 ACTCGTTTTCTATTTTTCATGACTTTCGAAACTTTTTTCGGTTCGAGATTTTTTAAAATTTTT
841 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCG-GATTTTTTAAAATTTTT
* * *
4952733 TTGGAAGGAGTTTTTGCCCCAAACTTGGTAGACATGATCCTTTTACTTTTT-TTGGCATGCACAA
1 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA-TTTTTGTTGGCATGCACAA
* * * * *
4952797 AAAAATTCAGCTAAAAGCTAGAAATGTATAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATT
65 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
4952862 TCAGACACTTTAATGGCTATTGGCAGCAAACATGTAAAATCTCAAATGCACTTTAA-GGGGTGTG
130 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
4952926 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTACCAGCACCTATCGTAC
195 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * **
4952991 ATCATGTGCGCACACCCCCTGG--CCCCCGATCGTCGGAAGCTAAATGCCG-CGGTCAGGTTCTC
260 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * ** * * * *
4953053 CGACGATGGTCCGACGAAGGTGCCCCAGCAAAGAAAAATGCGACACCAGC-CTATGCCCGAGCCC
325 CGGCGATGCTCCGGTGATGGTGCCCGA-CGAAGAAAAATGCGGCACCAGCAC-ATGCCCGAGCCC
* * * ** * * * ** *
4953117 AGAATGTGCTACCGTAACCCTTGGTTCAGTCTGATCTTAGACCAGGAATGAACTCCATATGC
388 AGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
4953179 CTAAGCCAAC
Statistics
Matches: 4274, Mismatches: 554, Indels: 204
0.85 0.11 0.04
Matches are distributed among these distances:
871 5 0.00
872 74 0.02
873 22 0.01
875 6 0.00
876 54 0.01
877 290 0.07
878 282 0.07
879 8 0.00
880 1 0.00
881 3 0.00
885 1 0.00
887 1 0.00
888 1 0.00
889 4 0.00
890 185 0.04
891 52 0.01
892 519 0.12
893 21 0.00
894 4 0.00
895 1 0.00
896 3 0.00
897 3 0.00
898 1 0.00
899 1 0.00
900 82 0.02
901 472 0.11
902 506 0.12
903 212 0.05
904 455 0.11
905 9 0.00
906 1 0.00
907 2 0.00
908 145 0.03
909 295 0.07
910 211 0.05
911 142 0.03
913 179 0.04
914 21 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (902 bp):
TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
GGCGATGCTCCGGTGATGGTGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
ATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAG
AGGGGCGGGATGCGCAAGTCGGGGATCGATCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGC
CGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACG
AAACGAGCGGGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGATTTTTTAAAATTTTT
Found at i:4951428 original size:26 final size:26
Alignment explanation
Indices: 4951377--4951429 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4951367 CTGGTCCGAT
**
4951377 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4951403 CTTAGACTGGGTATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
4951429 C
1 C
4951430 CCAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4954763 original size:26 final size:26
Alignment explanation
Indices: 4954734--4954789 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
4954724 CCAGTCCGAT
4954734 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4954760 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4954786 CTTA
1 CTTA
4954790 AGTCAACCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4955662 original size:26 final size:26
Alignment explanation
Indices: 4955633--4955685 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4955623 TCGGTCCGAT
* *
4955633 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4955659 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4955685 C
1 C
4955686 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4956043 original size:899 final size:901
Alignment explanation
Indices: 4953145--4957657 Score: 5996
Period size: 899 Copynumber: 5.1 Consensus size: 901
4953135 CCTTGGTTCA
** * *
4953145 GTCTGATCTTAGACCAGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGA---GC--G-G
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGCGGGCG
* * ** *
4953204 G-C-GA---GCACTATGCCAACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAT
66 GACGGACGGGCACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * * *
4953264 GTGGGTTTAGCCACATCTTCATATTTCTGTGTGCGAATTCCCTTTTTATGGCTTGTAAATTCATA
131 GTGGGTTTAGGCACATCTTCATATTTCTGAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
4953329 CAATGGTTCCTTAAGCCTTAACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTATGA
196 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * *
4953394 TTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC-GAAACGATTTTTGGCCCCAAA
261 TTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAA
* * *
4953458 GTTGGTAGACGTGATCCTTGTACTTTTTTTTGTG--TGCACAAAAAAATTCAGGTAAAAACTCGA
325 CTTGGTAGACGTGATCCTTGTA-TTTTTATTG-GCATGCACAAAAAAATTCAGCTAAAAACTCGA
*
4953521 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTG
388 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
4953586 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
453 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGG
* *
4953651 ATAAGGGGCCAATATATGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCG
518 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG
** * * * *
4953715 GCACCCCAAATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGT
583 GC-CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGT
* * * * **
4953780 GCCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCTAGCATGTGCTGCTGCAACCCTC
647 GCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCAGAGCCCAGCATGTGCTGCCACAACCCTC
4953845 GGTCC-G---G-TC-----C---G-AT---CT---TA-G---A-A-TGGGAATGAACTCCGTATG
712 GGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * **
4953884 CCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGGCCAGAGAGATGGGATATGC-AAG
777 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGG--ATGCGAAG
** * * * * * * * ** *
4953948 CCGGGGATCGATCGGGACCCCCTCTGCGTACTGCAGATCCTACTGTCGGAACCCTTAGTTTG
840 CCGGGGATCGGCCGAGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTG
* * * * *
4954010 GTCTGATCTGAGACTGGGAATGAACTCCGTATGCCTAAGCCAACGGACGAAACGGGCGGCAGGCG
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGCGGGCG
* * * *
4954075 GGCGGAAGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
66 GACGGACGGGCACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
4954140 GTTGGTTTAGGCACATCTTCATATTTCTGCA-TGCCAATGCCATTTTTATGGCTTCTAAATTCAT
131 GTGGGTTTAGGCACATCTTCATATTTCTG-AGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
4954204 ACAATGGTCCCTTAAGTCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTATG
195 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* * * *
4954269 ATTTTTGAAACTTTTTGCGGCTT-GGGGTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
260 ATTTTTGAAACTTTTTACAG-TTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
* * * * * *
4954333 ACATCGTAGACATGATCCTTGTATTTTTATTGGCGTGCACAAAAAAAATTCAGCTAAAAAATTGA
324 ACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGA
* *
4954398 AGTGTCCAAGATTTTGTGAGCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
388 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
4954462 GTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG-AGG
453 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGG
* * *
4954526 TATAGCGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCCCT
518 -ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* ** * * *
4954591 GGCCCCCCGATCACCGGAACCCCAATGCCGCTAGTTAAGTTCTCCGACGATGCTCCGATGATGGT
582 GGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGT
* * *
4954656 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
647 GCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCAGAGCCCAGCATGTGCTGCCACAACCCTC
4954721 GGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
712 GGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * *
4954786 CTTAAGTCAACCCAC-AAATCGAGCGTGCGGGCGCTCAGCCGGACAAAGGGGCGGGATGCGCAAG
777 CCTAAGTCAACCCACGAAA-CGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCG-AAG
* * * * * ** *
4954850 -CGGGGATCGGCCGAGTCCCCCTCTGCATGCTGTCAATTCTGCTGCTGCAACTTTCGGTCAG
840 CCGGGGATCGGCCGAGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTG
*
4954911 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAACGGTC-GGC
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGG-CGGGC
* * * * *
4954975 GGGCCGACGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGTATCGATAGGGTGGTA
65 GGACGGACGGGCACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
4955040 GGTAGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
130 GGTGGGTTTAGGCACATCTTCATATTTCTGAGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
4955105 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTCATG
195 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
4955169 ATTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
260 ATTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
* *
4955234 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAG
325 CTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * * * *
4955299 TGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTTAGACATTTTAGTGGCTACTGGT
390 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * * *
4955364 AGCAAACCTGTAAAATCTGAAATGCTCTTTAAGAGGGTGTAAGTTCTCAAGGTTTGATGAAGGAT
455 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGAT
4955429 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGC
520 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
** * * **
4955493 CCCCCGATCGTTGGTACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGCACC
585 CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
* * * * * * ***
4955558 CAGGCAAAGAAAAATGCGGCTCCAGCACATGGCCAG-GCCCAGAATGTTCTACTGGAACCCTCGG
650 CCGGCGAAGAAAAATGCGGCACCAGCACAT-GCCAGAGCCCAGCATGTGCTGCCACAACCCTCGG
* * * *
4955622 TTCGGTCCGATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
714 TCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * ** * **
4955687 TAAGTCAACCCATGAAACTAGCGTACGGGCGCTCATTCGGCCAGAGGTGCGGGATGCGTAAATCG
779 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCG-AAGCCG
* * * *
4955752 GGGATCGGCTGAGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACTCTCGGTCTG
843 GGGATCGGCCGAGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTG
*
4955811 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGGC
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGC-GGCGGGC
* * * *
4955876 GGACGGGCGGGCACTACGACGGCCAG-GAGACGGGATGCGCAAGCC-TCGATAGATAGCGTGGTA
65 GGACGGACGGGCACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
4955939 GGTGGGTTTAGGCACATCTTCATATTTCTAAGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
130 GGTGGGTTTAGGCACATCTTCATATTTCTGAGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
4956004 ACAATGGTCCCTTAAGCCTTCACGTGAAG-TTCAATGGCAAGACGACTCGTTTTCTATTTTTCAT
195 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC-ATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * * * ** * *
4956068 GCTTTTCGAAACTTTTTACAGTTCGGGA-TTTTTCAAATTTTTTTGGAAGGAGTTCTGCCCCCAA
259 GATTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
* * ** *
4956132 CCTTGGTAGACGTGATCATTGTATTTTTGCTGGCATGCACAAAAAAATTCAGCTAAAAAGTCGAA
324 ACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
4956197 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATGTT-AGACGCTTTAATGGCTACTG
389 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT-TTCAGACACTTTAATGGCTACTG
* *
4956261 GCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
453 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGG
*
4956326 ATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG
518 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG
* * * * *
4956391 GCCCCCTCGATCGCCGGAACCCTAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGGCGATGG
583 GCCCCC-CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-GACGATGG
* * * *
4956456 TGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGGATGTGCCGCCACAACCCT
646 TGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCAGAGCCCAGCATGTGCTGCCACAACCCT
* * *
4956521 CGGTCCGGTCCGATCTTAGACTGCGAATGAACTCCATATGCTTAGACTGGGAATGAACTTCCGTA
711 CGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC-TCCGTA
* * *
4956586 TGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAACCGGCCAGAGGGGCGGGATTCGTAA
775 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCG-AA
* ** * * *
4956651 GTCAAGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTG
839 GCCGGGGATCGGCCGAGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTG
* *
4956714 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGA---GCGGGC-
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGCGGGCG
* * *
4956775 GA---ACGGGCACTAC-ACCGACCTGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTA
66 GACGGACGGGCACTACGA-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
4956836 GGTGGGTTTAGTCACATCTTCTTATTTCTGTGTGCCAATGCC-TTTCTTATGGCTTGTAAATTCA
130 GGTGGGTTTAGGCACATCTTCATATTTCTGAGTGCCAATGCCATTT-TTATGGCTTGTAAATTCA
4956900 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTCAT
194 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
4956964 GATTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
259 GATTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
* * *
4957029 ACTTGGTAGACGTGATCCTTGTA-TTTTATAGGCATGCATAAAAAAATTCAGCTACAAACTCGAA
324 ACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
4957093 GTGTACAAGAGTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCAACTGG
389 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
4957158 CAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGA
454 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGA
*** *
4957223 TAGGGGGCCAATATAAGTTTCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGG
519 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG
* * * * * * * ** *
4957288 CCCCCCCGATTGTCGGAACCCTAATGTCGCCGGTTAGGTTCTCCGGCTATGCTCTTACGGTGGTG
584 -CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG
* * * * * *
4957353 CCTCGGTGAAGAAAAATGTGGCACCAGTACTTG-CATGAGCCCAGCATGTCCTGCCACAACCCTC
648 CCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCA-GAGCCCAGCATGTGCTGCCACAACCCTC
* * * * *
4957417 GGTCCAATCCGATCTTCGACTAGGCATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATG
712 GGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* ** *
4957482 CCTAAGTCAACCCATGAAACGAGCGTGCGGGTACTCAACCGGCCAGAGGGGCGGGATGCACAAGC
777 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGC-GAAGC
* * * * ** * * * * * *
4957547 CGGGGAACGACCAAGTCTCGATCTACATGCTGTCGATCCTGCTACCGCAACCTTCAGTCTG
841 CGGGGATCGGCCGAGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTG
4957608 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
4957658 TTTTGTGACC
Statistics
Matches: 3228, Mismatches: 344, Indels: 123
0.87 0.09 0.03
Matches are distributed among these distances:
865 49 0.02
868 2 0.00
870 1 0.00
871 2 0.00
872 1 0.00
873 2 0.00
874 1 0.00
875 10 0.00
876 515 0.16
877 57 0.02
880 1 0.00
881 2 0.00
886 1 0.00
889 1 0.00
890 2 0.00
893 2 0.00
894 163 0.05
895 128 0.04
896 313 0.10
897 182 0.06
898 8 0.00
899 662 0.21
900 431 0.13
901 353 0.11
902 172 0.05
903 167 0.05
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (901 bp):
GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGCGGGCG
GACGGACGGGCACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTGAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
TTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
TTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC
CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
CGGCGAAGAAAAATGCGGCACCAGCACATGCCAGAGCCCAGCATGTGCTGCCACAACCCTCGGTC
CAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGAAGCCGGGG
ATCGGCCGAGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTG
Found at i:4956574 original size:26 final size:27
Alignment explanation
Indices: 4956535--4956588 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
4956525 CCGGTCCGAT
4956535 CTTAGACTGCGAATGAAC-TCCATATG
1 CTTAGACTGCGAATGAACTTCCATATG
* *
4956561 CTTAGACTGGGAATGAACTTCCGTATG
1 CTTAGACTGCGAATGAACTTCCATATG
4956588 C
1 C
4956589 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 17 0.68
27 8 0.32
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (27 bp):
CTTAGACTGCGAATGAACTTCCATATG
Found at i:4958186 original size:556 final size:555
Alignment explanation
Indices: 4957104--4958208 Score: 1508
Period size: 556 Copynumber: 2.0 Consensus size: 555
4957094 TGTACAAGAG
* *
4957104 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCAACTGGCAGCAAACCTG
1 TTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATAGCAACTGGCAGCAAACCTG
* *
4957169 AAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAA
66 AAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTCAGGTTTGATGAGGGATAGAGGGCCAA
*** * *
4957234 TATAAGTTTCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGGCCCCCCCGATT
131 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATC
* * * * * * * * * *
4957299 GTCGGAACCCTAATGTCGCCGGTTAGGTTCTCCGGCTATGCTCTTACGGTGGTGCCTCGGTGAAG
196 ATCGAAAACCTAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCTCACGATGGTGCCGCAGAGAAG
* * * * * *
4957364 AAAAATGTGGCACCAGTACTTGCATGAGCCCAGCATGTCCTGCCACAACCCTCGGTCCAATCCGA
261 AAAAATGGGGCACCAGCACATGCATAAGCCCAGCATGTCCTGCCACAACCCTCGATCCAATCCAA
* * *
4957429 TCTTCGACTAGGCATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACC
326 TCTTAGACTAGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACC
* * *
4957494 CATGAAACGAGCGTGCGGGTACTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGAACGACC
391 CACGAAACGAGCGTGCGGGCACTCAACCGGCCAGAGGGGCGAGATGCACAAGCCGGGGAACGACC
* * * *
4957559 AAGTCTCGATCTACATGCTGTCGATCCTGCTACCGCAACCTTCAGTCTGGTCTGATCTTAGACTG
456 AAGTCCCCATCTACATGCTGTCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTC
*
4957624 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAT
521 GGAATGAACTCCATATGCCTAAGCCAACCGACGAT
*
4957659 TTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTG
1 TTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATAGCAACTGGCAGCAAACCTG
*
4957724 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCACGGTTTGATGAGGGATAGAGGGCCA
66 AAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTCA-GGTTTGATGAGGGATAGAGGGCCA
* *
4957788 ATATAAGGGCCAAGTACCAGGACCCA-CTGCACATCATGTGCGCACACCCCACCTGGCCCCCCCG
130 ATATAAGGGCCAAGTACCAGCACCCATC-GCACATCATGTGCGCACACCCC-CCCGGCCCCCCCG
4957852 ATCATCGAAAACCTAAT-TCTGCCGGTCAGGTTC-CACGGCGATGCTC-CAGCGATGGTGCCGCA
193 ATCATCGAAAACCTAATGTC-GCCGGTCAGGTTCTC-CGGCGATGCTCTCA-CGATGGTGCCGCA
* * ** ** *
4957914 GAGAAGAAAAATGCGGGCACCAGCACATGCCTAAGCCCAGCATGTGCTTTCGTAACCCTCGATCT
255 GAGAAGAAAAATG-GGGCACCAGCACATGCATAAGCCCAGCATGTCCTGCCACAACCCTCGATCC
* * * *
4957979 GATCCAATCTTAGACTGGGAAAGAACTCTGTA-GCTTAGACTGGGAATGAACTCGATATGCCTAA
319 AATCCAATCTTAGACTAGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAA
**
4958043 GTCAACCCACGAAACGAGCGTGC-GGCAGCTCGGCCGGCCAGAGGGGCGAGATGCACAAGCCGGG
384 GTCAACCCACGAAACGAGCGTGCGGGCA-CTCAACCGGCCAGAGGGGCGAGATGCACAAGCCGGG
* ** * * * *
4958107 GATCGACCGGGTCCCCATCTGCGTGCTG-CTGATCCTGCTATCGCAACCCTC-GATCTGGTCTGC
448 GAACGACCAAGTCCCCATCTACATGCTGTC-GATCCTGCTACCGCAACCCTCAG-TCTGGTCTGA
*
4958170 TCTTAGAGTCGGAATGAACTCCATATGCCTAAGCCAACC
511 TCTTAGACTCGGAATGAACTCCATATGCCTAAGCCAACC
4958209 AATGAAACGA
Statistics
Matches: 479, Mismatches: 61, Indels: 19
0.86 0.11 0.03
Matches are distributed among these distances:
554 3 0.01
555 172 0.36
556 240 0.50
557 64 0.13
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.22
Consensus pattern (555 bp):
TTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATAGCAACTGGCAGCAAACCTG
AAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTCAGGTTTGATGAGGGATAGAGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATC
ATCGAAAACCTAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCTCACGATGGTGCCGCAGAGAAG
AAAAATGGGGCACCAGCACATGCATAAGCCCAGCATGTCCTGCCACAACCCTCGATCCAATCCAA
TCTTAGACTAGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACC
CACGAAACGAGCGTGCGGGCACTCAACCGGCCAGAGGGGCGAGATGCACAAGCCGGGGAACGACC
AAGTCCCCATCTACATGCTGTCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTC
GGAATGAACTCCATATGCCTAAGCCAACCGACGAT
Found at i:4960256 original size:903 final size:893
Alignment explanation
Indices: 4957656--4960432 Score: 3674
Period size: 884 Copynumber: 3.1 Consensus size: 893
4957646 GCCAACCGAC
*
4957656 GATTTTGTGACCATTTGAAAAAAA-TGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAA
1 GATTTTGTGACCATTT-AAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
4957720 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCACGGTTTGATGAGGGATAGAGG
65 CCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTTGA-GGTTTGATGAGGGATAGGGG
* *
4957784 GCCAATATAAGGGCCAAGTACCAGGACCCA-CTGCACATCATGTGCGCACACCCCACCTGGCCCC
129 GCCAATATAAGGGCCAAGTACCAGCACCCATC-GCACATCATGTGCGCACACCCC-CCCGGCCCC
* * * *
4957848 CCCGATCATCGAAAACCTAATTCTGCCGGTCAGGTTCCACGGCGATGCTCCAGCGATGGTGCCGC
192 CCCGATCATCG-GAACC-CATTCCGCCGGTCAGGTT-CTCGGCGATGCTCCAGC-ATGGTGCC-C
* * * ** *
4957913 AGAGAAGAAAAATGCGGGCACCAGCACATGCCTAAGCCCAGCATGTGCTTTCGTAACCCTCGATC
252 CGAGAAGAAAAATAC-GGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCGATC
* * * *
4957978 TG-ATCCAATCTTAGACTGGGAAAGAACTCTGTA-GCTTAGACTGGGAATGAACTCGATATGCCT
316 TGTATGC--TCTTAGACTGGGAAA-AACTCCGTATGCTTAGACTAGGAATGAACTCCATATGCCT
* * * *
4958041 AAGTCAACCCACGAAACGAGCGTGC-GGCAGCTCGGCCGGCCAGAGGGGCGAGATGCACAAGCCG
378 AAGTCAA-CCACGAAACGAGCGTGCGGGC-GCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCG
* * * * *
4958105 GGGATCGACCGGGTCCCCATCTGCGTGCTGCTGATCCTGCTATCGCAACCCTCGATCTGGTCTGC
441 GGGATCGACCGGGTCCCC-TCTGTGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGA
* * * * *
4958170 TCTTAGAGTCGGAATGAACTCCATATGCCTAAGCCAACCAATGAAACGAGCAGGCGGGTGGGCGG
505 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAAC-GGC-GGTGGGCGG
* * *
4958235 GCGGGTGGGCACTATGTCGGCTAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGG
568 GC----GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
4958300 TGGGTTTCGGCACATCTTCATATTTCTACCTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
629 TGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
4958365 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAAGAT
694 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* **
4958430 TTTTGAAACTTTTTGTGTTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACT
759 TTTTGAAACTTTTTGTGGTTCAAGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACT
* * *
4958495 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGGTAAAAACTCGAAGTG
824 TGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
4958560 TACAA
889 TACAA
* * *
4958565 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAGAAACTCTAATGGCTACTGGCAGCAAA
1 GATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAA
* *
4958630 CCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTAATGAGGGATA-GGGG
65 CCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
* * * * *
4958694 CCAATATAAGGGCCAAGAACCAGCACCCATTGCACATTATGTGCACACACCCCCTCGGCCCCCCC
130 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
* * *
4958759 GATCGTCGGAACCCAAATGCCGCCGGTCAGGTTCTC--CGA-----C-G-ATGGTGCCCCAGCGA
195 GATCATCGGAACCC--ATTCCGCCGGTCAGGTTCTCGGCGATGCTCCAGCATGGTGCCCC-GAGA
* * * * *
4958815 AGAAAAATGCGGCACCAGCACATTCCCGAGCCCAGCATTTGCTGCCGCAACCCTC-ACTCTG-AT
257 AGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCGA-TCTGTAT
* * * * * *
4958878 CCGATCTTAGATTGGGAATGAACTCCGTATACTTAGAC-AGGGAATGAACTTCGTATGCCTAAGT
321 --GCTCTTAGACTGGGAA-AAACTCCGTATGCTTAGACTA-GGAATGAACTCCATATGCCTAAGT
* * * * * *
4958942 CAAGCCATGAAACGAGCATGTGGGCGCTCAG-CTGACCAAAGGGGCAGGATGCGCAAGCCGGGGA
382 CAA-CCACGAAACGAGCGTGCGGGCGCTCAGCCAG-CCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * * *
4959006 TTGGCCGGGTCCTCCTCTGTGTGCTG-CGATCCTGCTACCGCAACCCTTGGCCCGGTCAGATCTT
445 TCGACCGGGTCC-CCTCTGTGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTT
*
4959070 AGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACG-A--GC---GGGCGGGCGGGC
509 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAACGGCGGTGGGCGGGCGGGC
* * *
4959129 ACTACGTCGGCCAGAGAGACGAGATGCACAACCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
574 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * * *
4959194 CACATCTTCATATTTTTCCATGCCAATGCCATTTTTATGTCTTGTTAATTCATACAATGGTCCCT
639 CACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * * *
4959259 TAAGCCTTGACGTGAAGTTTCATGGCAGGACCAATCGTTTTCTATTTTTGATGA-TTTTGAAAAC
704 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG-AAAC
* * **
4959323 TTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGTGCCAAACTTGGTAGACA
768 TTTTTGTGGTTCAAGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACA
*
4959388 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAA
833 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
4959449 GATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAGTGGCAGCAAAC
1 GATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
4959514 CTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
66 CTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
*
4959579 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCCCCCCG
131 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
* *
4959644 ATCACCGGAATCCCATTACCGTCGGTCAGGTTCTCTGGCGATGCTCCAGCATGGTGCCCCGATGA
196 ATCATCGGAA-CCCATT-CCGCCGGTCAGGTTCTC-GGCGATGCTCCAGCATGGTGCCCCGA-GA
* * * * * *
4959709 AGAGAAATATGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCACAACCCTCGGTCCAGTTT
257 AGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCGAT-CTGTAT
*
4959774 GCTCTTTGACTGGGAACAAACTCCGTATGCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAA
321 GCTCTTAGACTGGGAA-AAACTCCGTATGCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAA
* *
4959839 CACACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGTGCAAG-CGAGGATCGA
385 C-CACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * * *
4959903 TCGGGTTCCCCTCTATGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCTGGTCTGATCTTAGAC
449 CCGGG-TCCCCTCTGTGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGAC
* *
4959968 TGGGAATGAAACTCTGTATGCTTAAGCCAACCGATGAAACGAACGGGCGGATGGGCGGGCGGGCA
513 TGGGAATG-AACTCCGTATGCCTAAGCCAACCGATGAAACGAAC-GGCGG-TGGGCGGGCGGGCA
* *
4960033 CTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
575 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
** *
4960098 ACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGCCCCTT
640 ACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
** * *
4960163 AAGCCTTCACGTGAAGTTTCATTTCAAGACGACTCGTTCTCTATTTTTCATGATTTTTGAACCTT
705 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
* *
4960228 TTCGTGGTTCAAGATTTTTTAAAATTTTTTCGG-AAGAAGTTTTGGCCCCAAACTTGGAAGACAT
770 TTTGTGGTTCAAGATTTTTTAAAATTTTTTCGGAAAG-AGTTTTGGCCCCAAACTTGGTAGACAT
** * *
4960292 GATCCTTGTATTTTTGTTGGCGCGTAC-AAAAAATTCAGCTAAAAACTCAAAGTGTACAA
834 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
4960351 GATTTTGTGACCATTT-GAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
1 GATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
4960415 CTGTAAAATCTCAAATGC
66 CTGTAAAATCTCAAATGC
4960433 CGGAACCCTC
Statistics
Matches: 1629, Mismatches: 189, Indels: 108
0.85 0.10 0.06
Matches are distributed among these distances:
883 90 0.06
884 411 0.25
885 3 0.00
887 3 0.00
888 8 0.00
892 3 0.00
893 26 0.02
894 203 0.12
895 36 0.02
896 140 0.09
897 116 0.07
898 5 0.00
899 3 0.00
900 1 0.00
901 63 0.04
902 49 0.03
903 259 0.16
904 5 0.00
905 3 0.00
907 6 0.00
908 38 0.02
909 78 0.05
910 79 0.05
911 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
ATCATCGGAACCCATTCCGCCGGTCAGGTTCTCGGCGATGCTCCAGCATGGTGCCCCGAGAAGAA
AAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCGATCTGTATGCTCT
TAGACTGGGAAAAACTCCGTATGCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCACGA
AACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTC
CCCTCTGTGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATG
AACTCCGTATGCCTAAGCCAACCGATGAAACGAACGGCGGTGGGCGGGCGGGCACTACGTCGGCC
AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
TTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCA
AGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATT
TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
Found at i:4961291 original size:26 final size:26
Alignment explanation
Indices: 4961255--4961305 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4961245 TGGTCTGAAC
*
4961255 TTAGATTGGGAATGAACTCCATATGT
1 TTAGACTGGGAATGAACTCCATATGT
*
4961281 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCATATG
4961306 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGT
Found at i:4962177 original size:26 final size:26
Alignment explanation
Indices: 4962148--4962200 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4962138 CCGGTCCGAT
*
4962148 CTTAGACTGGGAATGAGCTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
4962174 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
4962200 C
1 C
4962201 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:4962502 original size:894 final size:893
Alignment explanation
Indices: 4960444--4971562 Score: 11412
Period size: 900 Copynumber: 12.3 Consensus size: 893
4960434 GGAACCCTCG
* * * * * **
4960444 GTGCGGGCTCTCAATCGGCCAGAGGGGCAGGATGCACAAGCCAGGGATCGACCGGGTCCCCCTCT
1 GTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT
* * * *
4960509 GCGTGCTGCCAATCCTGCTGCCACAACCCTC-GATCCGG-TCAAATTTTAGACTGGGAATGAACT
66 GCGTGCTGCCGATCCTGCTGCCGCAACCCTCAG-TCCGGTTC-GATCTTAGACTGGGAATGAACT
* *
4960572 CCGTATGCCTAAGCCAACTGATGAAATGAGCGGGCGGGCGGGCTGGCACTACGCCGGCCAGAGAG
129 CCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGC--G--GGCACTACGCCGGCCAGAGAG
* * *
4960637 GCGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAAGTGGGTTTCA-GCACATCTTCATATTTCT
190 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT-AGGCACATCTTCATATTTCT
** ** *
4960701 ACGTGCCAATGCCATTTTTATACCTTGTAAATTTGTACAATGGTACCTTAAGCCTTCACGTGAAG
254 ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * ** *
4960766 TTTCATGGCAAGACGACTTGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGTGGTT-TAGGAT
319 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GAT
* * *
4960830 TTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTG
383 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * **
4960895 TTGGCATGCACAAAAAAATTCAGCTAAAAATTAGAAGTGTACAAGATTTTGTGACCATTCAAAAA
448 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
4960960 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
513 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* *
4961025 TTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTA
578 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * *
4961090 GCACCCATCGCACATCATGTGCGCACACCCCCC-GACCCCCC-ATCGTCGGAACTCCAATG-CGC
643 GCACCCATCACACATCATGTGCGCAC-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGC
* * * **
4961152 CGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCTAGC---G----AT---GCACCAGCAC
707 CGGTCAGGTTCTCTGGCGATGCTC-CGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCAC
** * * * * *
4961207 ATGCTAGAGCGCCA-CATGTGTTGCCGCAACCCTCGGTCTGGTCTGAACTTAGATTGGGAATGAA
771 ATGCCCGAGC-CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
* * * *
4961271 CTCCATATGTTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGC
835 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
* * *
4961330 GTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGAAGCACAAGCCGGGGATCGATCGGGTCCCCCTCT
1 GTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT
* * ** * * *
4961395 ACATGCTATCGATCCTACTGCCACAACCCTCAGTTCGG-TCTGATCTTAGACTGGGAATGAACTC
66 GCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTTC-GATCTTAGACTGGGAATGAACTC
* * * * * * * *
4961459 TGTATGCCTAAGCCAATCGACGAAATGAGCGGACGAGTGGGCACTACGTCAGCCAGAGAGGCGGG
130 CGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* ** * *
4961524 ATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGCCTAGGCACATCTTCATATTTCTACATGG
195 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
*
4961589 CAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
260 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * *
4961654 GGCAAGACGACTCATTTTCTATTTTTCATGATTTGTGAAACTTTTTACGGTTCGGGATTTTTTAA
325 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAA
* **
4961719 AATTTTTTGGGAAGGAGTTTTTTCCCCAAA-TGTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
390 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACT-TGGTAGACGTGATCCTTGTATTTTTGTTGGCA
** *
4961783 TGCACAAAAAAATTCAGCTAAAAACAAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTAT
454 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
4961848 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
519 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
4961913 GGGTGTGAGTTCTCAAGGATTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCC
584 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * *
4961977 ACCTCACATCATGTGCGCAACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTTA
649 ATCACACATCATGTGCGC-ACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCA
* * ** ** *
4962042 AGTTCTCTGGCGATGCTCCAGTGATGGTGCGTCGATGAAGAAAAATGCGGCACCAGCACATGCCT
713 GGTTCTCTGGCGATGCTCC-GCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCC
* * * *
4962107 GAGCCTAGCATGTGCTGCCGCAACCCCCGGTCCGGTCCGATCTTAGACTGGGAATGAGCTCCGCA
777 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
*
4962172 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGC
842 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
* * * *** * *
4962224 ATACGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCAACCGAGTCACCCTCT
1 GTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT
* * * * ** *
4962289 ACATGCTGCCGATCCTACTGCCACAACCCTCAGTTTGGTTCAATCTTAGACTGGGAATGAACTCC
66 GCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCC
* ** * * *
4962354 ATATGCCTAAGCCAATTGACGAAATGAGCGGGCGGCCGGGCACTAGGTCGGCCAGAGAGACGGGA
131 GTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * * * *
4962419 TGCGCAGGTCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCCTGCC
196 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
4962484 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
261 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * ** *
4962549 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAATTTTTGTGGTACGAGATTTTTTAAA
326 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAA
* *
4962614 ATTTTTTCGGAAGGAGTTTTAGG-CCCAAACTTGGTAGATGTGATCCTTGTATATTTGTTGGCAT
391 ATTTTTTCGGAAGGAGTTTT-GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* * * * *
4962678 GCATAAAAAAATTCAGGTAAAAGCTCAAAGTGTACAAGATTTTGTGACCATTTGAAAATAGTGTC
455 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * *
4962743 CCCATTTTAGACATTTTAATGGCTA-TGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGG
520 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * *
4962807 GG-GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGCACCAGCACCCA
585 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * ** * *
4962871 TCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGCCAAAACCCCAATGCCACCGATCA
650 TCACACATCATGTGCG--CACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCA
* * * *
4962935 GGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCACATGCCC
713 GGTTCTCTGGCGATGCTCCG-CGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCC
* * * * * * *
4963000 GAGCCTAGCATGTGCTGCCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATAAACTCCGTG
777 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* *
4963065 TGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACAAGC
842 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
** * * ** *
4963117 GTGCGGATGCTCAG-CTGGCCAGAGGGGCGGGATGCGTAAGTCGGGGATCGGTCAAGTCCCCCTT
1 GTGCGGGCGCTCAGTC-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
* * * * *
4963181 TGCGTGCTGTCGATCCTGCTGCTGCAACCCTCAGACCGG-TCTGATCTTAGAATGGAAATGAACT
65 TGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTTC-GATCTTAGACTGGGAATGAACT
* * ** * * * *
4963245 CCATACGTGTAAGCCAA-CGACGAAACAAGCAGCCGGGCAGACGGGCGGGTACTACACCGGCTAG
129 CCGTATGCCTAAGCCAACCGACG-AA-ATG-AG-C-GG--G-CGGGCGGGCACTACGCCGGCCAG
** * * * *
4963309 AGAGACAAGATACGCAAGCTGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATT
186 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
4963374 TCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
251 TCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
** * *
4963439 AAGTTTCATGGCAAGACGACTTATTTTCTATTTTTCATAATTTTTGAAACTTTTTTCGGTTC-AG
316 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-
* * * *
4963503 GATTTTTTAAAATTTTTTCGGAAGGGGTTTTGGCCCCAAACTTGGTTGATGAGATCCTTGTATTT
380 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* *
4963568 TTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGA
445 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
4963633 AAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
510 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
4963698 TATTTAAGGGGGTGTGAGTTCTCGAGGTTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAATT
575 TCTTTAAGGGGGTGTGAGTTCTCGAGG-TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * *
4963762 ACCAGCA-CCATCCCACATCATGTGCGCACACCCCCGGCCCACCCGATC-ACTGGAACCCCAATG
639 ACCAGCACCCATCACACATCATGTGCGCACCCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATG
* *
4963825 CCGTCGGTCAGGTTCTC---CG--G-T----GATGGTG-CCCGGCGAAGAAAAATGCGGCCCCAG
703 CCGCCGGTCAGGTTCTCTGGCGATGCTCCGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAG
* * ** *
4963879 CACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTTGGTCTAGTCCGATCTTAGACTGGGAATT
768 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATG
*
4963944 AACTCCGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
833 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
* * *
4964005 GTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCGTCT
1 GTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT
* * ** *
4964070 GCGTGCTGTCGATCCTGCTACCATAACCCTC-GATCCGG-TCTGATCTTAGACTGGGAATGGACT
66 GCGTGCTGCCGATCCTGCTGCCGCAACCCTCAG-TCCGGTTC-GATCTTAGACTGGGAATGAACT
* * * * **
4964133 CCATATGCCTAAGCCAACCGATGAAACGAGTGGGCTGGCGGGCGGGCGGGCACTATGTTGGCCAG
129 CCGTATGCCTAAGCCAACCGACG-AA--A-T--G--AGCGGGCGGGCGGGCACTACGCCGGCCAG
*
4964198 AGGGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
186 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* * * *
4964263 TCTATGTGCCAATGCCAATTTTATGGCTTGTAAATTCATACAATGGACACTTAAGCCTTCACGTG
251 TCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * *
4964328 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGG
316 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAG
* * * * * * *
4964393 ATTTTTTTAAATTTTTTAGAAAGGATTTTTGGTCCCAAACTTGGTAGACATGATCCTTGTACTTT
381 ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
4964458 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
446 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* *
4964523 AAAAGTGTCCCCATTTCAGACAGTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
511 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* *
4964588 CTTTAAGGGGGTGTGAGTTCACGAGGTTTGATGAGGGATAGGGGTCCAATATAAGGGCCAAGTAC
576 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
** * **
4964653 CAGCACCCATCGTACATCATGTGCGCACACCCCCCCCGGTCCCCCCGATCACCGGAACCCCAATG
641 CAGCACCCATCACACATCATGTGCG--CA-CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATG
* * * * *
4964718 CCGTCGGTCAGTTTCTCTGGCGATGCTCCGATGATGGTGCCTCGGTGAAGAAAAATGCGGCACCA
703 CCGCCGGTCAGGTTCTCTGGCGATGCTCCG-CGATGGTGCCCCGGCGAAGAAAAATGCGGCACCA
* ** * *
4964783 GCACATGCTCGAGCATAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTTGGAAT
767 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
*
4964848 GAACTCCGTATGCTTAGACTGGGAATGAACT-CGTATGCCTAAGTTAACCCATTG-AACGAGC
832 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-TGAAACGAGC
* * * *
4964909 GTGCGGGCGCTTAGTCGGCCAGAGGGGCTGAATGCGCAAGCCGGGGATCGATCGGGTCTCCCC-C
1 GTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC-CCCCTC
* ** ** * * *
4964973 TACGTGCTGTTGATCCTGCTGCCGCAACCCTCAAACCGGTCCAATCTTAGTCTGGGAATGAACTC
65 TGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTC
* * * * *
4965038 CGTATGGCTAAGCCAACCGACGAAACAAGCGGACGGGCGGGCGGGCACTATGCCAGCCAGAGAGA
130 CGTATGCCTAAGCCAACCGACG-AA-ATG-AG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGA
* * *
4965103 CGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGCCACATCTTCATATGTCTAC
191 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
* * *
4965168 GTGCCAATGCCATTTTTATGGCTTGTAAACTCATACAACGGTCCCTTAAGCCTTCACATGAAGTT
256 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
*
4965233 TCATGGCAAGACGATTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-AGGATTT
321 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTT
* * * *
4965297 TTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGGTCCTTGTATTTTTTTT
385 TTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
*
4965362 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAA
450 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* *
4965427 GTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCTAATGCTCTTT
515 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
*
4965492 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGC
580 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * ** *
4965557 ACCCATCACACATCATGTGCGGACACCTCCCCGGCCCCCCCGATCGCCAAAACCCCAATGCCACC
645 ACCCATCACACATCATGTGC-G-CACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCC
* * * *
4965622 GGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACA
708 GGTCAGGTTCTCTGGCGATGCTCC-GCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACA
* * * * *
4965687 TGCCCCAGCCCAGCATTTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATAAACT
772 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * * *
4965752 CTGTGTGCTTAGACTGGGAATGAACCCCGTATGCCTAAGTCAACCCATGAAACAAGC
837 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
* ** * * *
4965809 ATGCGGATGCTCAGTAGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCTGTCGGGTCCCCCTCT
1 GTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT
* * * * * * * *
4965874 GTGTGCTACCGATCCTGCTACCGCAATCCTCAGACTGGTTTGATCTTAGAATGGGAATGAACTCC
66 GCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCC
* * * * * *
4965939 ATATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGAACGGGCGGGTAGTACACCGGCTAGAG
131 GTATGCCTAAGCCAACCGACGAAA--TG-A-GC-GG-G--CGGGCGGGCACTACGCCGGCCAGAG
** * * * *
4966004 AGACAAGATACCCAAGCTGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
188 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
*
4966069 TACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
253 TACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * *
4966134 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTTCGGTTCAAAAT
318 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGAT
* *
4966199 TTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATTCTTGTATTTTTG
383 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * *
4966264 TTGGCGTGCACAAAAAAATTCAGCTAAACACTCCAAGTGTACAAGATTTTGTGACCATTTGAAAA
448 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
4966329 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
513 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
*
4966394 TTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
578 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * **
4966459 GTATCCATCACACATCATGTGTGCACACCCCCCGG--CCTCTTATCGTCGGAACCCCAATGCCGC
643 GCACCCATCACACATCATGTGCGCAC-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGC
* * * * *
4966522 CGGTCAGGTTCTCTGACGATGCTCTGGCGATGGTGCCTCGGTGAAGAAAAATGTGGCACCAGCAC
707 CGGTCAGGTTCTCTGGCGATGCTC-CGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCAC
* ** * * * * *
4966587 ATGCCTGATTCCAGCATGTGCTACCGCAACCCTCGATCCGATTCGATCTTAGACTGGGAATGGAC
771 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
* *
4966652 TCCGTATGCTTAGACTGGGAATGAACTTCGTATCCCTAAGTCAACCCATGAAACGAGC
836 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
* * * * * ** *
4966710 GTGCGGGCACTTAGCCGGCCAGAGGGGCGGGATGCACAAGTCGGGGATCGACCGTGTCCCCCTCT
1 GTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT
** ** * * *
4966775 GCGTGCTGCCGATCCTGCTATCATAACCCTCAGTCCGGTCCGATCTTAGAATGGGAATGAACCCC
66 GCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCC
** *
4966840 GTATGCCTAAGCCAACCGACGAAATGAGCATGCGGGCGCTCAGTGC-CCATCGCACATCATGTGC
131 GTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCG----G-GCACTA-CG--C--C--G-GC
* **** * * * *** *
4966904 GCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTGTCCAGCG-ATGG
183 -CAGA-GAGACGG------GAT-G-CGCAA-GCC-GTGGATCGA-T-AGG--GT---G-GTA-GG
** ** * ** * * * ** *
4966968 TGCCCCGGTGAAGAAAAATGCAGCACCA--AC-ACATGCTCAA-GCCCA---GCATGTGCTACCG
227 TG----GGTTTAGGCACAT-CTTCA-TATTTCTACGTGC-CAATG-CCATTTTTATG-GCT--TG
* * * ** *** * * **
4967026 TAAACCTTGGTCCGGTTCGATCTTAGATTGGGAATGGAC-TC-CGT-ATGCTTAGACTAGG-AAT
281 TAAA---T--T-C-ATACAATGGTCCCTT---AA--GCCTTCACGTGAAG-TTTCA-T-GGCAA-
* ** **** * ** ** *** ** *** * * * ***
4967087 GA--ACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCCCAGCTGGCCAGA-GGG
330 GACGACT-CGT-TTTCT-A-T-TTTTCATGATTTTTG-AAAC-TTTTTAC-GGT-TCGAGATTTT
* * * *** ** ** * ** * *
4967149 GTGAGATGTACAAGTCAGGGATCG-GTCGTGTCCCC-CTCTGTGTGCT-GCCGATTG-TGCTGTC
386 TTAAAAT-T--TTTTC--GGAAGGAGTTTTGGCCCCAAACT-TG-G-TAGACG--TGATCCT-T-
** ** ** * * ** * * * **
4967210 GTAACCCTCGGTTCGGTC-TG-ATC--TTAGA--CTGGGAATGAACTCCGTA-TG-CCTAAG-CC
439 GT-A-TTTTTGTT-GG-CATGCA-CAAAAAAATTCAGCTAA-AAACT-CGAAGTGTAC-AAGATT
**** * ** * ** ** *** ** * * *** ** *
4967266 AACCGACGAAATGAACGGACGGATGAACGGGTGGGCACTACGCTGGCCA-GAGAGACTGGATACG
496 TTGTGACCATTTGAA--AAAAG-TGTCCCCAT-TTCA-GACACT-TTAATG-GCTACTGG-CA-G
* ** * * ** * * * ** ** * *
4967330 C-AAGCTGT-GGA--TCAATAGGGT-GGT-AGGTAGCTTTAGGCACATCTTC-ATATTT-CTGCG
552 CAAACCTGTAAAATCTCAA-ATGCTCTTTAAGG-GGGTGT--G-AGTTC-TCGAGGTTTGATGAG
* * ** * * * * ** ** * * **
4967387 TGACA--ATGCCATTTTTATGG-CTTGTA--AG--TTCAT-ACA-AT--GGT-CCCTTAAGCCTT
611 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGC---A-CCCC
* ****** * * * * * * *
4967440 CACGTGAAGTTTC-AT-GT-GTGGA-CCCAA---CGCAC-ATCA---TGTGT-GCACAT-CCCCC
672 CCCG-GCCCCCCCGATCGTCG-GAACCCCAATGCCGC-CGGTCAGGTTCTCTGGC-GATGCTCCG
** ** * ** *
4967492 CGA---CCCCCCTTATC-ACAGAAACCCCAATGC--CACCGATCAGGTTCTCCGGCGATGGTGCC
733 CGATGGTGCCCC--GGCGA-AGAAA----AATGCGGCACC-AGCA-CAT-GCC--CGA----GCC
* * *** * * * * * * * ***
4967551 CCGACGAAGAAAAAT-ACG-ACACCAGCACATGCCCGAGCCCAGCAT-GT-G-CTGCCGCAACCC
782 CAG-C-ATG--TGCTGCCGCA-ACC--CTC-GGTCCG-GTCC-G-ATCTTAGACTG--GGAATGA
* * * * *
4967611 TCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTCAGTTAACCCATGAAATGAGC
834 AC--TCCG-TATG--CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
* * ** * ** *
4967676 GTGCAGGCGCTCAGTCGACCAGAGGGGTAGGATGTGCAAGTTGGGGATTGGTCGGGTCCCCCTCT
1 GTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT
* * * * * *
4967741 GCGTGCTGTCGATCCTGGTGCTGCAACCCT-GGTCCGATCCGATCTTAGACTGGGAATGAACTCC
66 GCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCC
* * * * *
4967805 GTATGCCTAAGCCAACCGATGAAACAAGCGGGTGGGTGGGCGGGTGGGCACTACGCCTGCCAGAG
131 GTATGCCTAAGCCAACCGACG--A-AA-----TGAGCGGGCGGGCGGGCACTACGCCGGCCAGAG
* * *
4967870 AGATGGGATGCGCAAGCCATGGATCGATAGGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTC
188 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
*
4967935 TACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTGAAGCCTTCACGTGAA
253 TACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* *
4968000 GTTTCATGGCAAGAC-ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCAAGAT
318 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGAT
* *
4968064 TTTTTAAAATTTTTTCAGCAA-GAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTT
383 TTTTTAAAATTTTTTC-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * * * * *
4968128 GTTGGCTTGTACAAAAAAAATCAGCTAAAAACTCAAAGTGTACAAGATTTTGTTACCAATTGAAA
447 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* *
4968193 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAGTGCTC
512 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* *
4968258 TTTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
577 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * * *
4968323 AGCACCCATCACACATCATGGGTGCACACCCCCCCGGTCCCCTCGATCGTCAGAAGCCCAATGCC
642 AGCACCCATCACACATCAT--GTGCGCACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCC
* ** * *
4968388 ACCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCAACGAAGAAAATTGCAGCACCAGC
705 GCCGGTCAGGTTCTCTGGCGATGCTCCG-CGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGC
4968453 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
769 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
* * * * * *
4968518 TCTCCGTATGCTTAGACTGGGAATGAACCCCATATGCCTAAGTCAACGCACGAAACAAGC
834 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
* * * * * *
4968578 GTGCAGGCGCTCAGCCGGCCAGAGGGGTGGGATACGCAAGCCAGGGATCAG-CTGGGTCCCCCTC
1 GTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTC
* * * * * * *
4968642 TGAGTGCTGCCGATCCTACTACCGCAAGCCTCAATCCGGTCCTATCTTAGACTGGGAATGAACTC
65 TGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTC
* * * *
4968707 CGTATGCCTAAACCAACCGACGAAACGAACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGG
130 CGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* * **
4968772 ATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGTGTGC
195 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
** * *
4968837 CAATGCCATTTTTACAGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCAC
260 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* ** * *
4968902 GCCAAGACGACTTATTTTTTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAA
325 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAA
* *
4968967 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGTAT
390 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* * * * *
4969032 GCACAAAAAAATTCAGCTAGAAACACGAAGTGTATAAGATTTTGTGACCATTTCAAAAAAATGTC
455 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * *
4969097 CCCATTTCAGACACTTTAATAGCTACTGGTAGCAAGCCTGTAAAATCTCAAATGCTCTTTAAGGG
520 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
4969162 GGTGCGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
585 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
** * * * *
4969227 TCGTACATCATGTGCGCACACCCCCGGCCCCCCCAATCG-CTGGAACGCCAATGCCGTCGGTCAG
650 TCACACATCATGTGCGCACCCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAG
* *
4969291 G-T-TCT--C--TG----GCGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGA
714 GTTCTCTGGCGATGCTCCGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * * * **
4969346 GCCCAGCAAGTGCTACCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGCACTTTGTATG
779 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
4969411 CTTAGAATGGAAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGC
844 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
* * * * *
4969461 GTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGTGCAAGCCGGGGATAGG-CTAGGTCCCCCTC
1 GTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTC
* * * *
4969525 TGCGTGCTGCTGATCCTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTC
65 TGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTC
* * ** * * *
4969590 CGTATGCCTAAGCCAACCGACAAAATGAGCGGGCAGAAGGGCACTCCGCCGGCCAGAGATACAGG
130 CGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* * *
4969655 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGTACATCTTCATATTTCTATGTGC
195 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
* *
4969720 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTAGGTGAAGTTTCAT
260 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * *
4969785 GGCAAGACGACCCGTTTTATATTTTTTAGGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAA
325 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAA
* * ** **
4969850 AATATTTTCGGATGGAGTTTTGGCCCCAAACTTGGTAGACAAGATCCTTGTA-TTTTGTAAGCAT
390 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
*
4969914 GCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
455 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
4969979 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
520 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * *
4970044 GGTGTGAGTTCACGAGGTTTGATGAGGGGTAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCA
585 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * *
4970109 TCGCACAACATGTGCGCACACCCCCCAGCCCCCCCGATCGTCGGAACCCCAATACCGCTGGTCAG
650 TCACACATCATGTGCGCAC-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAG
* * *
4970174 GTTCTCTGGCGTTGCTCCGTCGATGGTGCCCCGACGAAGAAAAGTGCGGCACCAGCACATGCCCG
714 GTTCTCTGGCGATGCTCCG-CGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCG
* * *
4970239 AGCCCAGCATGTGCTGCCACAAACCTCGGTCCGG-CCGATCTTAGTCTGGGAATGAACTCCGTAT
778 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
4970303 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAAC
843 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
* * *
4970354 GTGAGGACGCTCAG-CTGGCTAGAGGGGCGGGATGCGCAAGCC-GGGATCGGTCGGGTCCCCCTC
1 GTGCGGGCGCTCAGTC-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC
* * * * * * * *
4970417 TGCGTGCTGCCGGTCCTACTG-TGACAACCCTCGGTCCAGTTTGATCTTAGACTAGGTATGAACT
65 TGCGTGCTGCCGATCCTGCTGCCG-CAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACT
* * * *
4970481 CTGTATGCCTAAGCCAA-CAAAGAAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCA
129 CCGTATGCCTAAGCCAACCGACG-AAATGA--------GCGGGCGGGCGGGCACTACGCCGGCCA
* * * * * **
4970545 GAGAGACGGGATGCGTAAGGCATGGATCGATATGGTGGTAGGTGGGTTTATGCACATGGTCATAT
185 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*
4970610 TTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
250 TTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * *
4970675 GAAGTTTCATTGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA
315 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA
* * * * * *
4970740 GATTTTTTAAAATTTTTTCAGATGCAGTTTTGGTCCCAAACTTTGTAGACGTGATCTTTGTATTT
380 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * *
4970805 TTATTGGCATGCATAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
445 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
4970870 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGC
510 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * ** *
4970935 TCTTTATGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGAAAATATAAGGGCCAAATA
575 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * ** * * *
4971000 CCAGCACCTATCACACATCATGTGCGCACACCCCCGGCCCCCCCGATCCCCGAAAGCCTAATGCC
640 CCAGCACCCATCACACATCATGTGCGCACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCC
* * * *
4971065 GTCGGTCAGGTTCTC---CGA-------CGATGGTGCCCTGGCGAAGAAAAATGAGGCGCCAGCA
705 GCCGGTCAGGTTCTCTGGCGATGCTCCGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCA
* * **
4971120 TATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCAATCCGATCTTAGACTGGGAATGAA
770 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
* *
4971185 CTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGA
835 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
* * * * * ** * *
4971244 GTACGGGCGCTCAGCCGGCCAAAAGGGTGGGATGCTTAAGCCGAGGATCGGTCGGGTCCCCCTGT
1 GTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT
* * * * * * * *
4971309 ACGTACTGCCGATCTTGCTACCGTAACCCTCGGTCC-GATCTGATCTTGGACTGGGAATGAACTC
66 GCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTTC-GATCTTAGACTGGGAATGAACTC
* * * * *
4971373 CATATACCTAAGACAACCGATGAAACGAGCAGGCAGGTTGGCGGGCGGGCACTACGCCGGCCAGA
130 CGTATGCCTAAGCCAACCGACGAAA--TG-A-GC--G--GGCGGGCGGGCACTACGCCGGCCAGA
* *
4971438 GAGACGGGTTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTT
187 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
*
4971503 CTACGTGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCA
252 CTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
4971563 GTCGACCAGA
Statistics
Matches: 8492, Mismatches: 1372, Indels: 733
0.80 0.13 0.07
Matches are distributed among these distances:
881 55 0.01
882 622 0.07
883 590 0.07
884 36 0.00
885 3 0.00
886 142 0.02
887 7 0.00
888 290 0.03
889 496 0.06
890 128 0.02
891 227 0.03
892 135 0.02
893 553 0.07
894 726 0.09
895 169 0.02
896 296 0.03
897 10 0.00
898 5 0.00
899 193 0.02
900 1294 0.15
901 583 0.07
902 146 0.02
903 92 0.01
904 638 0.08
905 136 0.02
906 12 0.00
907 32 0.00
908 19 0.00
909 14 0.00
910 15 0.00
911 17 0.00
912 12 0.00
913 14 0.00
914 17 0.00
915 19 0.00
916 6 0.00
917 13 0.00
918 8 0.00
919 11 0.00
920 6 0.00
921 10 0.00
922 6 0.00
923 9 0.00
924 14 0.00
925 16 0.00
926 18 0.00
927 12 0.00
928 13 0.00
929 20 0.00
930 9 0.00
931 2 0.00
932 2 0.00
934 2 0.00
935 2 0.00
936 10 0.00
937 20 0.00
938 8 0.00
939 14 0.00
940 13 0.00
941 15 0.00
942 8 0.00
943 4 0.00
944 13 0.00
945 10 0.00
946 7 0.00
947 11 0.00
948 12 0.00
949 10 0.00
950 6 0.00
951 27 0.00
952 17 0.00
953 16 0.00
954 18 0.00
955 15 0.00
956 12 0.00
957 16 0.00
958 26 0.00
959 17 0.00
960 20 0.00
961 22 0.00
962 6 0.00
963 4 0.00
964 4 0.00
965 50 0.01
966 120 0.01
967 1 0.00
968 6 0.00
969 3 0.00
973 9 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (893 bp):
GTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT
GCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCC
GTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAA
ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
CACACATCATGTGCGCACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
TCTCTGGCGATGCTCCGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
Found at i:4963958 original size:26 final size:26
Alignment explanation
Indices: 4963929--4963981 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4963919 CTAGTCCGAT
* *
4963929 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
4963955 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
4963981 C
1 C
4963982 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:4964863 original size:26 final size:25
Alignment explanation
Indices: 4964834--4964885 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
4964824 CCAGTCCGAT
*
4964834 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACT-CGTATG
4964860 CTTAGACTGGGAATGAACTCGTATG
1 CTTAGACTGGGAATGAACTCGTATG
4964885 C
1 C
4964886 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCGTATG
Found at i:4966663 original size:26 final size:26
Alignment explanation
Indices: 4966634--4966684 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
4966624 CCGATTCGAT
*
4966634 CTTAGACTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4966660 CTTAGACTGGGAATGAACTTCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
4966685 CCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4967076 original size:26 final size:26
Alignment explanation
Indices: 4967047--4967099 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
4967037 CCGGTTCGAT
* * * *
4967047 CTTAGATTGGGAATGGACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
4967073 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
4967099 C
1 C
4967100 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:4968553 original size:26 final size:26
Alignment explanation
Indices: 4968502--4968554 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4968492 CCGGTCCGAT
* * *
4968502 CTTAGACTGGGAATGATCTCCGTATG
1 CTTAGACTGGGAATGAACCCCATATG
4968528 CTTAGACTGGGAATGAACCCCATATG
1 CTTAGACTGGGAATGAACCCCATATG
4968554 C
1 C
4968555 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCATATG
Found at i:4969678 original size:883 final size:883
Alignment explanation
Indices: 4967626--4971562 Score: 5130
Period size: 883 Copynumber: 4.4 Consensus size: 883
4967616 CCGATCTGAT
* * * * * *
4967626 CTTAGACTGGGAATGAACTCCGTATGCCTCAGTTAACCCATGAAATGAGCGTGCAGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * *
4967691 CGACCAGAGGGGTAGGATGTGCAAGTTGGGGATTGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGTGGGATGTGCAAGCCGGGGATAGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
4967756 TGGTGCTGCAACCCT-GGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
4967820 CCGATGAAACAAGCGGGTGGGTGGGCGGGTGGGCACTACGCCTGCCAGAGAGATGGGATGCGCAA
196 CCGA--CAA-AA-C----GAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
4967885 GCCATGGATCGATAGGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
253 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
*
4967950 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTGAAGCCTTCACGTGAAGTTTCATGGCAAGAC
318 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
4968015 -ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCAAGATTTTTTAAAATTTTTT
383 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * * * *
4968079 CAGCAA-GAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGTACAAA
448 C-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
4968143 AAAAATCAGCTAAAAACTCAAAGTGTACAAGATTTTGTTACCAATTGAAAAAAGTGTCCCCATTT
512 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
4968208 CAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAGTGCTCTTTAAGAGGGTGTGA
577 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
4968273 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
642 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
* * * * * **
4968338 TCATGGGTGCACACCCCCCCGGTCCCCTCGATCGTCAGAA-GCCCAATGCCACCGGTCAGGTTCT
707 TCAT--GTGCGCACACCCCCGGCCCCCCCGATCGTCGGAACG-CCAATGCCGTCGGTCAGG-T-T
** * **
4968402 CTGGCGATGCTCCGACGATGGTGCCCCAACGAAGAAAATTGCAGCACCAGCACATGCCCGAGCCC
767 CT--C--TG----G-CGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
*
4968467 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGATCTCCGTATG
823 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
4968528 CTTAGACTGGGAATGAACCCCATATGCCTAAGTCAACGCACGAAACAAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * *
4968593 CGGCCAGAGGGGTGGGATACGCAAGCCAGGGATCAGCT-GGGTCCCCCTCTGAGTGCTGCCGATC
66 CGGCCAGAGGGGTGGGATGTGCAAGCCGGGGAT-AGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * ** * *
4968657 CTACTACCGCAAGCCTCAATCCGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCA
130 CTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
4968722 ACCGACGAAACGAACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGG
195 ACCGACAAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
4968787 ATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAC
260 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTAT
* * * * **
4968852 AGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCACGCCAAGACGACTTAT
325 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* *
4968917 TTTTTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
390 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
*
4968982 AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCA
455 AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * * *
4969047 GCTAGAAACACGAAGTGTATAAGATTTTGTGACCATTTCAAAAAAATGTCCCCATTTCAGACACT
520 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * *
4969112 TTAATAGCTACTGGTAGCAAGCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCAA
585 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
**
4969177 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGC
650 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
*
4969242 GCACACCCCCGGCCCCCCCAATCG-CTGGAACGCCAATGCCGTCGGTCAGGTTCTCTGGCGATGG
715 GCACACCCCCGGCCCCCCCGATCGTC-GGAACGCCAATGCCGTCGGTCAGGTTCTCTGGCGATGG
* * * *
4969306 TGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAAGTGCTACCGTAACCCT
779 TGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * **
4969371 CGGTCCGGTCTGATCTTAGACTGGGAATGCACTTTGTATG
844 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
4969411 CTTAGAATGGAAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
4969476 CGGCCAGAGGGGTGGGATGTGCAAGCCGGGGATAGG-CTAGGTCCCCCTCTGCGTGCTGCTGATC
66 CGGCCAGAGGGGTGGGATGTGCAAGCCGGGGATAGGTC-GGGTCCCCCTCTGCGTGCTGCCGATC
* *
4969540 CTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** * * *
4969605 ACCGACAAAATGAGCGGGCAGAAGGGCACTCCGCCGGCCAGAGATACAGGATGCGCAAGCCGTGG
195 ACCGACAAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
4969670 ATCGATAGGGTGGTAGGTGGGTTTTGGTACATCTTCATATTTCTATGTGCCAATGCCATTTTTAT
260 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTAT
* * *
4969735 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTAGGTGAAGTTTCATGGCAAGACGACCCGT
325 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * *
4969800 TTTATATTTTTTAGGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATATTTTCGGATGG
390 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
* ** *
4969865 AGTTTTGGCCCCAAACTTGGTAGACAAGATCCTTGTA-TTTTGTAAGCATGCACAAAAACATTCA
455 AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
4969929 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
520 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
4969994 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCACGA
585 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
* * * *
4970059 GGTTTGATGAGGGGTAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACAACATGTGC
650 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
* * *
4970124 GCACACCCCCCAGCCCCCCCGATCGTCGGAACCCCAATACCG-CTGGTCAGGTTCTCTGGCGTTG
715 GCACA-CCCCCGGCCCCCCCGATCGTCGGAACGCCAATGCCGTC-GGTCAGG-T-TCT--C--TG
* * *
4970188 CTCCGTCGATGGTGCCCCGACGAAGAAAAGTGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
772 ----G-CGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * *
4970253 TGCCACAAACCTCGGTCCGG-CCGATCTTAGTCTGGGAATGAACTCCGTATG
832 TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
4970304 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAACGTGAGGACGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
4970369 TGGCTAGAGGGGCGGGATGCGCAAGCC-GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGGTCC
66 CGGCCAGAGGGGTGGGATGTGCAAGCCGGGGATAGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * ** * * *
4970433 TACT-GTGACAACCCTCGGTCCAGTTTGATCTTAGACTAGGTATGAACTCTGTATGCCTAAGCCA
131 TGCTACCG-CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * *
4970497 ACAAAGAAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGTA
195 ACCGACAAAACGA--------GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * **
4970562 AGGCATGGATCGATATGGTGGTAGGTGGGTTTATGCACATGGTCATATTTCTATGTGCCAATGCC
252 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCC
*
4970627 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGA
317 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
4970692 CGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
382 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * * * * * * * *
4970757 TCAGATGCAGTTTTGGTCCCAAACTTTGTAGACGTGATCTTTGTATTTTTATTGGCATGCATAAA
447 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
*
4970822 AACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
512 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
4970887 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTATGGGGGTGTGA
577 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
** ** * *
4970952 GTTCTTGAGGTTTGATGAGGGATAGGGGGAAAATATAAGGGCCAAATACCAGCACCTATCACACA
642 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
* * * *
4971017 TCATGTGCGCACACCCCCGGCCCCCCCGATC-CCCGAAAGCCTAATGCCGTCGGTCAGGTTCTCC
707 TCATGTGCGCACACCCCCGGCCCCCCCGATCGTCGGAACGCC-AATGCCGTCGGTCAGGTTCTCT
* * * * *
4971081 GACGATGGTGCCCTGGCGAAGAAAAATGAGGCGCCAGCATATGCCCGAGCCCAGCATGTGCTGCC
771 GGCGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* ** *
4971146 GCAACCCTTGGTCCAATCCGATCTTAGACTGGGAATGAACTCCATATG
836 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
4971194 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGAGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
4971259 CGGCCAAAAGGGTGGGATGCT-TAAGCCGAGGATCGGTCGGGTCCCCCTGTACGTACTGCCGATC
66 CGGCCAGAGGGGTGGGATG-TGCAAGCCGGGGATAGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * * * *
4971323 TTGCTACCGTAACCCTCGGTCCGATCTGATCTTGGACTGGGAATGAACTCCATATACCTAAGACA
130 CTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** *
4971388 ACCGATGAAACGAGCAGGCAGGTTGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGTTGCGCA
195 ACCGACAAAAC--G-A-GC--G--GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
4971453 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTACGTGCCAATGCC
252 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCC
*
4971518 ATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCA
317 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
4971563 GTCGACCAGA
Statistics
Matches: 2651, Mismatches: 338, Indels: 103
0.86 0.11 0.03
Matches are distributed among these distances:
882 211 0.08
883 570 0.22
884 3 0.00
885 3 0.00
887 4 0.00
888 2 0.00
889 71 0.03
890 107 0.04
891 227 0.09
892 95 0.04
893 112 0.04
894 114 0.04
895 162 0.06
896 294 0.11
898 3 0.00
899 8 0.00
900 285 0.11
901 213 0.08
902 117 0.04
903 50 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (883 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGTGGGATGTGCAAGCCGGGGATAGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACAAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG
CACACCCCCGGCCCCCCCGATCGTCGGAACGCCAATGCCGTCGGTCAGGTTCTCTGGCGATGGTG
CCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:4970307 original size:26 final size:26
Alignment explanation
Indices: 4970278--4970330 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4970268 TCCGGCCGAT
*
4970278 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4970304 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4970330 C
1 C
4970331 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4971197 original size:26 final size:26
Alignment explanation
Indices: 4971168--4971220 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4971158 CCAATCCGAT
4971168 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
4971194 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
4971220 C
1 C
4971221 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4971840 original size:295 final size:295
Alignment explanation
Indices: 4971299--4971857 Score: 825
Period size: 295 Copynumber: 1.9 Consensus size: 295
4971289 GATCGGTCGG
* * * * ** *
4971299 GTCCCCCTGTACGTACTGCCGATCTTGCTACCGTAACCCTCGGTCCGATCTGATCTTGGACTGGG
1 GTCCCCCTCTACGTACTACCGATCCTGCTACCGCAACCCTCGGTCCGATCCAATCTTAGACTGGG
* * * *
4971364 AATGAACTCCATATACCTAAGACAACCGATGAAACGAGCAGGCAGGTTGGCGGGCGGGCACTACG
66 AATGAACTCCATATACCTAAGACAACCAACGAAACGAGCAGGCAGGGTGCCGGGCGGGCACTACG
* * * *
4971429 CCGGCCAGAGAGACGGGTTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATC
131 CCGGCCAGAAAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
4971494 TTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCC
196 TTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCC
4971559 TTCAGTCGACCAGAGGGGCGGGATGCGTAACCTGA
261 TTCAGTCGACCAGAGGGGCGGGATGCGTAACCTGA
* * *
4971594 GTCCCCCTCTGCGTGCTACCGATCCTGCTACCGCCACCCTCGGTCC-AGTCCAATCTTAGACTGG
1 GTCCCCCTCTACGTACTACCGATCCTGCTACCGCAACCCTCGGTCCGA-TCCAATCTTAGACTGG
* * **
4971658 GAATGAACTCCATATGCCTAAGCCAACCAACGAAACGAGC-GGGTGGGTGACCGGGCGGGCACTA
65 GAATGAACTCCATATACCTAAGACAACCAACGAAACGAGCAGGCAGGGTG-CCGGGCGGGCACTA
* *
4971722 CGTCGGCCAGAAAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACA
129 CGCCGGCCAGAAAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * * * *
4971787 TCTTCATATTTCTGCGTGCCAATGCTATTTTTATGGCTTGTAAATTTATACAATGGTCTCTTAAG
194 TCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAG
4971852 CCTTCA
259 CCTTCA
4971858 CGTGAAGTTT
Statistics
Matches: 233, Mismatches: 29, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
294 7 0.03
295 226 0.97
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.25
Consensus pattern (295 bp):
GTCCCCCTCTACGTACTACCGATCCTGCTACCGCAACCCTCGGTCCGATCCAATCTTAGACTGGG
AATGAACTCCATATACCTAAGACAACCAACGAAACGAGCAGGCAGGGTGCCGGGCGGGCACTACG
CCGGCCAGAAAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCC
TTCAGTCGACCAGAGGGGCGGGATGCGTAACCTGA
Found at i:4972400 original size:25 final size:26
Alignment explanation
Indices: 4972365--4972416 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
4972355 CCGGTCCGAT
* *
4972365 CTTAGACTGGGAATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4972391 CTTAG-CTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4972416 C
1 C
4972417 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:4973939 original size:26 final size:26
Alignment explanation
Indices: 4973910--4973962 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4973900 CCGGCCAGAT
* *
4973910 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
4973936 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
4973962 C
1 C
4973963 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:4974838 original size:26 final size:26
Alignment explanation
Indices: 4974802--4974854 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4974792 CCGGTCCGAT
*
4974802 CTTAGACTGGGAATGAGCTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
*
4974828 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
4974854 C
1 C
4974855 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:4975516 original size:903 final size:896
Alignment explanation
Indices: 4973332--4977214 Score: 4517
Period size: 903 Copynumber: 4.4 Consensus size: 896
4973322 CGCCAGAGTA
* * * * *
4973332 GGGATGCACAAG-CGAGGATCGATAGGGT-GTA-GTGGGTTTAGGCACATCATCATATTT-TTTG
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATA
* * *
4973393 TG-CAATGCCA-TTTTATGCCTTG--AATTC--A-AATGGTCGCTTGAGCCTTCACGTGAA--TT
66 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * * * *
4973449 CAAGGCAAG--GACTCGTTCTCTATATTTC--GATTTTCGAAACTTTTGCGGTTCTA-AATTTTT
131 CATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAACTTTTTCGGTTC-AGGATTTTT
4973509 T-AAA----TT-A-AA-GAGTTTT--CACCC-AA-TTGGT-G-CGTGATCCTT-TA--TTTTTTG
195 TAAAATTTTTTCAGAAGGAGTTTTGGC-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
* *
4973557 GCATGCACAAAAAAATTCAGCTAAAAACTCG-ATGTACAAGA-TTTGCGACCATTTGAATAAAGT
259 GCATGCACAAAAAAATTCAGCTAAAAACTCGAATGTACAAGATTTTGTGACCATTTGAAAAAAGT
* *
4973620 -TCCCCATTTTCAGACACTTTAAT-GCTAC-GAC-GCAAACCTGTAAAATCTCAAATTCTC-TTA
324 GTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
4973680 ATGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCA
388 AGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * *
4973745 CCCATCACACATCATGTGCGCACACCCCTC-GA----TCG-T--C-GGAACCCCAATGCCACCGG
453 CCCATCGCACATCATGTGCGCACACCCCCCGGACCCCCCGATCGCTGGAACCCCAATACCGCCGG
* * * * ** *
4973801 TCAGGTTCTCTGGCGATGCTCCAGCGATGGTGCCTCGACAAAGAAAAATGTGGTACCAGCACATG
518 TCAGGTTCTCCGACGATGCT-CAGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATG
* * * * * *
4973866 CCCAAGCCCAACATGTGCTACCGTAACCCTCGGTCCGG-CCAGATCTTAGACTGGGATTGAACTC
582 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCC-GATCTTAGACTGGGAATGAACTC
* * *
4973930 CGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTTCAGG-C
646 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGC-GGAC
* * * * *
4973994 GCTCAGTCAGCCAGAGGGCCGAGATGCGCAAGCCAGGGATCG-GTCGGGTCCCCCTCTGCGTGCT
710 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACTCGGGT-CCCCTCTGCGTGCT
* * * *
4974058 GCCGATCCTGCTGCCACAACCCTCGGTCTGATCTGATCTTAGACTAGGAATGAACTCCGTTTGCC
774 GCCAATCCTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCC
** * * *
4974123 TAAGCCAACCGACGAAAC-A-------AACGGGCGGGCACTATGTCGGCCAAAGAGAC
839 TAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGAC
*
4974173 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGA-
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-AT
4974237 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
65 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * ** *
4974302 TCATGGCAAGACGGCTCATTTTCTATTTTTCATGGTTTTCAAAACTTTTTGCAATTCGGGATTTT
130 TCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAACTTTTT-CGGTTCAGGATTTT
* **
4974367 TTAAAATTTTTTCAGAAGGACTTTTGGCATCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
194 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
*
4974432 GCATGCACAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGCGACCATTTGAAAAAAG
259 GCATGCACAAAAAAATTCAGCTAAAAACTCGAA-TGTACAAGATTTTGTGACCATTTGAAAAAAG
* * * *
4974497 TGTTCCCATTTCAGACACTTTAATGGCTACTAGTAGCAAACCTGTAAAATCTCACATGCTCTTTA
323 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
** * *
4974562 AGGGGGTGTGAGTTCTTGAAATTTGATGAAGGATTGGGGGCCAATATAAGGGCCAAGTACCAGCA
388 AGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * *
4974627 CCCATCGCACATCATTTGCGCACACCCCCCCGGACCCCCTGATCGCTGGAACCCTATTACCGTCG
453 CCCATCGCACATCATGTGCGCACA-CCCCCCGGACCCCCCGATCGCTGGAACCCCAATACCGCCG
* *
4974692 GTCAAGTTCTCCGACGATGCTTCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
517 GTCAGGTTCTCCGACGATGC-TCAGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACAT
* * * *
4974757 GCCTGAGCCCAGCATGTGCTGTCGTAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAGCTC
581 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTC
** * *
4974822 TATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAACGTGCGGACG
646 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGACG
* * *
4974887 CTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACT-GGGTCCCCTCTGAGTGCTGC
711 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACTCGGGTCCCCTCTGCGTGCTGC
* * * * *
4974951 CAATCCTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGATTGGGAATGAACTCCATATGCCTA
776 CAATCCTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTA
* * * * *
4975016 AGCCAACAGATGAAGCGAGCGGGCGGGCGGGCGGGAGGGCACTACGCCGGCCAGAGAGGC
841 AGCCAACCGACGAAACGAGTGGGCGGGCGGGC----GGGCACTACGCCGGCCAGAGAGAC
* * * * *
4975076 GGGATGCGCAAGCTGTGGGTCGAAAGGGTGGTCGGTGCGTTT-GGACACATCTTCATATTTCTAT
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG-CACATCTTCATATTTCTAT
* * *
4975140 GTGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTT
65 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * *
4975205 TCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTT
130 TCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAACTTTTT-CGGTTCAGGATTTT
** * * *
4975270 TTAAAATTTTTTTGGAAGGATTTTTGGCCCCAGACTTGGTAGTCGTGATCCTTGTATTTTTTTTG
194 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
* * *
4975335 GCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAAATTTTGTGACCATTTGAAAAATG
259 GCATGCACAAAAAAATTCAGCTAAAAACTCGAA-TGTACAAGATTTTGTGACCATTTGAAAAAAG
* *
4975400 TGTCCCCATTTCAGACACTTTAATGGGTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTA
323 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
*
4975465 AGTGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
388 AGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * **
4975530 CCCATCGCACATCATGTGCGTACACCCCCCGG-CCCCCCGATCGTTGGAACCTTAATACCGCCGG
453 CCCATCGCACATCATGTGCGCACACCCCCCGGACCCCCCGATCGCTGGAACCCCAATACCGCCGG
* **
4975594 TCAGGTTCT-C--CG--G-T----GATGGTG-CGCGGTGAAGAAAAATACGGCACCAGCACATGC
518 TCAGGTTCTCCGACGATGCTCAGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGC
* * * *
4975648 CCGAGCCCAGCATGTGCTGTCGCAACCCTCGATCAGGTTCGATCTTAGACT-GGAATGAACTCTG
583 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCG
* * *
4975712 TATGCTTAGACTGGCAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GAGCGC
648 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGA-CGC
* * * *
4975776 TTAGCCTGCCAGAGGGTCGGGATGCGCAAGCCAGGGATCGAC-CGGGTCACCCTCTGCGTGCTGT
712 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACTCGGGTC-CCCTCTGCGTGCTGC
* * * * * * * *
4975840 CGATCCTGTTGTCGCAACCCTTGGCCTGGTTCAATCTTAGACTAGGAATGAACTCCGTATGCCTA
776 CAATCCTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTA
** * *
4975905 AGCCAATTGACGAAACAAGTGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGAC
841 AGCCAACCGACGAAACGAGTGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGAC
*
4975961 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATG
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATA
* * * *
4976026 TGCCAAGGCCATTTTTGTGGCCTATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
66 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * *
4976091 CATGGAAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAACGTTTTCCGGTTCATGATTTTT
131 CATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAAC-TTTTTCGGTTCAGGATTTTT
* * * * *
4976156 TAAAATCTTTTCAGAAGGAGTTTTGGCCCCAAACCTGGTAGACGTAATCCATGTATTTTTGTTGG
195 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGG
* *
4976221 CATGCAAAAAAAAAATTCAGCTAAAAACTCGTAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
260 CATGC-ACAAAAAAATTCAGCTAAAAACTCG-AATGTACAAGATTTTGTGACCATTTGAAAAAAG
* * * * *
4976286 TGTCCCCATTTCAGACACTTTAATTGCTACTGGTAGCAATCCTGTAAAATTTCAAATGATCTTTA
323 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
4976351 AGGGGGTGTGAGTTCTCGCGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
388 AGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * * *
4976416 CCCATTGCACATCATGTGCGCACACCCCTCGGCCCCCCCGATCG-TCAGAACCCCAATGCCGTCG
453 CCCATCGCACATCATGTGCGCACACCCCCCGGACCCCCCGATCGCT-GGAACCCCAATACCGCCG
* * ** *
4976480 GTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAATAAAT
517 GTCAGGTTCTCCGACGATGCTCAG-CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACAT
** * * *
4976545 GCCCGAGTGCAGCATGTGCTGCCACAACCCTCGATCCGGTCCAATCTTAGATTGGGAAT-AAGCT
581 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAA-CT
* ** *
4976609 CCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA-AGAGCGTAAGGG
645 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACA-AGCGTGCGGA
* *
4976673 CGCTCAGCCGGCCAGAGAGGCGGGATGCGCAAGCCTA-GGATCGA-TCGGGTCCCTCTCTGTGTG
709 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-AGGGATCGACTCGGGTCCC-CTCTGCGTG
* * *
4976736 CTGCCAATCTTGCTGCCACAACCCTCGGT-TCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
772 CTGCCAATCCTGCTGCCACAACCCTCGGTCT-GGTCCGATCTTAGACTAGGAATGAACTCCGTAT
*
4976800 GCCTAAGCCAACCGACGAAACGAGTGGGTGGGCGGGCGGGCGGGCGACCGAGCACTACGTCGGCC
836 GCCTAAGCCAACCGACGAAACGA----GT----GGGCGGGCGGGCG---G-GCACTACGCCGGCC
4976865 AGAGAGAC
889 AGAGAGAC
* * **
4976873 GTGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
1 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATA
* *
4976938 TGCCAATGCCATTTTTAATGGCCTGGTTAAATTCATACAATAGTCCCTTTAAGCCTTTCACGTGA
66 TGCCAATGCCATTTTT-ATGG-CTTG-TAAATTCATACAATGGTCCC-TTAAGCC-TTCACGTGA
* * *
4977003 AGTTTCATGGCAAGACGGACTCGTTTTTCTATTTTGTCATAATTTTTGGGAAACTTATGTT---T
126 AGTTTCATGGCAAGAC-GACTC-ATTTTCTATTTT-TCATGA-TTTT-CGAAACTT-T-TTCGGT
** ** ** *
4977065 TTTGGATTTTTTAAAAAAAAAAATTTTTTTTGGAAGGAGTTTTGGCTCAAAAAATTGGTAGACGT
184 TCAGGATTTTTT-------AAAA-TTTTTTCAGAAGGAGTTTTGGC-CCCAAACTTGGTAGACGT
4977130 GATCCTTGGTATTTTTTTTTTGGCATGCAC-AAAAAATTCAGGCTAAATAACCTCGAATGTACAA
240 GATCCTT-GTA--TTTTTTTTGGCATGCACAAAAAAATTCA-GCTAAA-AA-CTCGAATGTACAA
* *
4977194 TATTTTATGACCATTTGAAAA
299 GATTTTGTGACCATTTGAAAA
4977215 NNNNNNNNNN
Statistics
Matches: 2590, Mismatches: 311, Indels: 191
0.84 0.10 0.06
Matches are distributed among these distances:
841 11 0.00
842 15 0.01
843 3 0.00
844 24 0.01
845 3 0.00
846 8 0.00
847 11 0.00
849 5 0.00
851 1 0.00
852 24 0.01
854 10 0.00
856 15 0.01
858 14 0.01
859 11 0.00
860 3 0.00
864 2 0.00
865 1 0.00
866 2 0.00
867 6 0.00
868 1 0.00
869 3 0.00
870 5 0.00
871 1 0.00
872 10 0.00
873 2 0.00
875 38 0.01
876 1 0.00
877 9 0.00
878 37 0.01
879 10 0.00
881 24 0.01
882 84 0.03
883 5 0.00
884 2 0.00
885 254 0.10
886 209 0.08
887 37 0.01
888 111 0.04
889 169 0.07
890 9 0.00
891 87 0.03
892 219 0.08
893 5 0.00
894 1 0.00
896 1 0.00
898 9 0.00
899 81 0.03
900 183 0.07
901 37 0.01
902 11 0.00
903 448 0.17
904 2 0.00
908 12 0.00
911 1 0.00
912 96 0.04
913 3 0.00
914 1 0.00
915 19 0.01
916 7 0.00
917 24 0.01
918 5 0.00
919 11 0.00
920 15 0.01
921 6 0.00
922 6 0.00
923 1 0.00
927 4 0.00
928 19 0.01
929 19 0.01
930 13 0.01
931 7 0.00
932 43 0.02
933 4 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (896 bp):
GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATA
TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
CATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAACTTTTTCGGTTCAGGATTTTTT
AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGC
ATGCACAAAAAAATTCAGCTAAAAACTCGAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
GGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
ATCGCACATCATGTGCGCACACCCCCCGGACCCCCCGATCGCTGGAACCCCAATACCGCCGGTCA
GGTTCTCCGACGATGCTCAGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCG
AGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGACGCTCAG
CCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACTCGGGTCCCCTCTGCGTGCTGCCAATC
CTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
ACCGACGAAACGAGTGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGAC
Found at i:4975725 original size:25 final size:26
Alignment explanation
Indices: 4975691--4975742 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4975681 CAGGTTCGAT
*
4975691 CTTAGACTGG-AATGAACTCTGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
4975716 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
4975742 C
1 C
4975743 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:4976619 original size:26 final size:26
Alignment explanation
Indices: 4976590--4976642 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
4976580 CCGGTCCAAT
4976590 CTTAGATTGGGAAT-AAGCTCCGTATG
1 CTTAGATTGGGAATGAA-CTCCGTATG
4976616 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
4976642 C
1 C
4976643 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:4980782 original size:901 final size:892
Alignment explanation
Indices: 4979049--4980793 Score: 2473
Period size: 901 Copynumber: 1.9 Consensus size: 892
4979039 TGTTGGCATG
* *
4979049 TCACGTCTACCAAGTTTGGGGCCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAGCCCTA
1 TCACGTCTACCAAGTTTGGGACCAAAAACTCCTTCCG-AAAAATTTTAAAAAAACCCGAGCCCTA
** *
4979114 AAAAGTTTCAGAAATCGTGAAAAAATAGAAAACGAGTCGTGTTGTCATGAAACTTCACGTGAAGG
65 AAAAGTTTCAGAAATCGTGAAAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAGG
* *
4979179 CTTAAGGCCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGAT
130 CTTAAGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGAT
* * * * * ** *
4979244 GTGCTTAGACCCCACCTACCACCTTATCGATCTATGGCTTGCGCATCCCGCCTCTCTGGCCGACG
195 ATGCCTAGAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGCCTCTCTGGCCGACA
* *
4979309 TAGTACCCAACCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGT
260 TAGTACCCAACCGCCCGCCTGCTCGTTTCATCGGTTGGCTTACGCATACGGAGTTCATTCCCAGT
* * * *** *
4979374 CTAAGATCAGACTGAATCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAAGAGGGGGACCCGAC
325 CTAAGATCAGACCGAACCGAGGGTTGAGGCAGCAGGATCAACAGCAC-CAAGAGGAGGACCCGAC
* * ** * * *
4979439 CGATCCCTGGCTTGCGCATCATGCCCCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGT
389 CGATCCCCGGCTTGCGCAGCACACCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * *
4979504 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTAGATGGAGTTCATTCCCAGTCTAAGATTG
454 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAGATAGAGTTCATTCCCAGTCTAAGATTA
* *** *
4979569 GATCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTT
519 GACCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGCACTGGTGCCACATTTTTCTT
* * * *
4979634 CGCTGGGGCACTACCGCCGGAGCATCGTCGGAGAACCTGACCGACAGCATTAAGGTTGCGGCGAT
584 CGCCGGGGCACCACCGCCGGAGCATCGCCGAAGAACCTGACCGACAGCATTAAGGTTGCGGCGAT
* * *
4979699 CGGGGGGGTGTGCACCCATGATGTGTGATGGATGCTGGTACTTGGACCTTATATTGGCCCCTTAT
649 CGGGGGGGTGTGCACACATGATGTGCGATGGATGCTGGTACTTGGACCTTATATTGGCCCCCTAT
*
4979764 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
714 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
4979829 CAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACT
779 CAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACT
4979894 TTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACGAAAATACAAAGA
844 TTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACGAAAATACAAAGA
* * * *
4979943 TCACGTCTACCAAGTTTGGGATC-AAAACTCCTTCTG-AAAATTTTAAAAAAACCCGAATCTCT-
1 TCACGTCTACCAAGTTTGGGACCAAAAACTCCTTCCGAAAAATTTTAAAAAAACCCG-AGCCCTA
*
4980005 AAAAGTTT-TGAAAATCGTG-AAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAG
65 AAAAGTTTCAG-AAATCGTGAAAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAG
*
4980068 GCTTAAGGGACCATTTTATGAATTTAAAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
129 GCTTAA-GGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
*
4980133 ATATGCCTA-AACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGCCTCTCTGGCCGG
193 ATATGCCTAGAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGCCTCTCTGGCCGA
* ** * * *
4980197 CATAGTGCTCGCCCGCCCGCTCGCCTGCTTGTTTCGTCGGTTGGCTTACGCATACGGAGTTCATT
258 CATA--G-T-ACCCAACCGCCCGCCTGCTCGTTTCATCGGTTGGCTTACGCATACGGAGTTCATT
* *
4980262 CCCAGTCTAAGAGT-GGACCGAACCGAGGGTTGAGGTAGCAGGATCAACAGCA-CATAGAGGAGG
319 CCCAGTCTAAGA-TCAGACCGAACCGAGGGTTGAGGCAGCAGGATCAACAGCACCA-AGAGGAGG
* *
4980325 ACCCGACCGATCCCCGGCTTGCGCAGCCCACCCCTCTAGCCGGCTGAGCGCCCGTACGCTCGTTT
382 ACCCGACCGATCCCCGGCTTGCGCAGCACACCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTT
* ** *
4980390 CGTGGGTTGATTTAGG-ATACGGAGTTCATTCGTAGTCTAAGCATATAGAGTTCATTCCCAGTCT
447 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAGATAGAGTTCATTCCCAGTCT
* ** *
4980454 AAGATTAGACCGGATCAAGGGTTGCGGTAGCATATGCTGGGCTCGGGCATGCACTGGTGCCACAT
512 AAGATTAGACCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGCACTGGTGCCACAT
* * * ** *
4980519 TTTTCTTTGCCGGGGCACCATCGCCGGAGCATCGCCGAAGAACCTGACCGACGGCATTGGGGTTT
577 TTTTCTTCGCCGGGGCACCACCGCCGGAGCATCGCCGAAGAACCTGACCGACAGCATTAAGGTTG
* * * *
4980584 CGGCGATCGGGGGGGCCGGAGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCT
642 CGGCGATC-----GG--GG-GG-GTGTGCACACATGATGTGCGATGGATGCTGGTACTTGGACCT
* *
4980649 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACTCGCTTAAAGAGCATTTGAGAT
698 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
4980714 TTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
763 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCA
4980779 CAAAATCTTGTACAC
828 CAAAATCTTGTACAC
4980794 ATGCCAACAA
Statistics
Matches: 747, Mismatches: 86, Indels: 29
0.87 0.10 0.03
Matches are distributed among these distances:
890 100 0.13
891 96 0.13
892 168 0.22
893 91 0.12
894 110 0.15
895 1 0.00
897 2 0.00
899 2 0.00
900 2 0.00
901 175 0.23
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (892 bp):
TCACGTCTACCAAGTTTGGGACCAAAAACTCCTTCCGAAAAATTTTAAAAAAACCCGAGCCCTAA
AAAGTTTCAGAAATCGTGAAAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGC
TTAAGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATA
TGCCTAGAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGCCTCTCTGGCCGACAT
AGTACCCAACCGCCCGCCTGCTCGTTTCATCGGTTGGCTTACGCATACGGAGTTCATTCCCAGTC
TAAGATCAGACCGAACCGAGGGTTGAGGCAGCAGGATCAACAGCACCAAGAGGAGGACCCGACCG
ATCCCCGGCTTGCGCAGCACACCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAGATAGAGTTCATTCCCAGTCTAAGATTAGA
CCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGCACTGGTGCCACATTTTTCTTCG
CCGGGGCACCACCGCCGGAGCATCGCCGAAGAACCTGACCGACAGCATTAAGGTTGCGGCGATCG
GGGGGGTGTGCACACATGATGTGCGATGGATGCTGGTACTTGGACCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTT
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACGAAAATACAAAGA
Found at i:4981158 original size:26 final size:26
Alignment explanation
Indices: 4981106--4981158 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4981096 GTTGACTTAG
*
4981106 GCATACGGAGTTCATTCCCAATTTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
4981132 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
4981158 G
1 G
4981159 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:4982902 original size:26 final size:26
Alignment explanation
Indices: 4982866--4982918 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4982856 GTTGACTTAG
4982866 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
* *
4982892 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
4982918 G
1 G
4982919 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:4983096 original size:24 final size:24
Alignment explanation
Indices: 4983069--4983119 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
4983059 GGCCGGGGGG
*
4983069 GTGTGCGCATATGATGTGCGATGA
1 GTGTACGCATATGATGTGCGATGA
4983093 GTGTACGCATATGATGTGCGATGA
1 GTGTACGCATATGATGTGCGATGA
4983117 GTG
1 GTG
4983120 CTGGTACTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.22, C:0.12, G:0.37, T:0.29
Consensus pattern (24 bp):
GTGTACGCATATGATGTGCGATGA
Found at i:4983819 original size:26 final size:26
Alignment explanation
Indices: 4983783--4983835 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4983773 GTTGACTTAG
*
4983783 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
4983809 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4983835 G
1 G
4983836 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4984722 original size:26 final size:26
Alignment explanation
Indices: 4984686--4984738 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4984676 GTTGACTTAG
*
4984686 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
4984712 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
4984738 G
1 G
4984739 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:4985118 original size:903 final size:903
Alignment explanation
Indices: 4981991--4985478 Score: 4927
Period size: 903 Copynumber: 3.9 Consensus size: 903
4981981 GTTGACTTAG
* ** *
4981991 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCAAGGGTTACGACAGCACATGCTGGG
* * ** * ****
4982056 CTCGAGCATGTGCTGGTGCCGCATTTTTC-TTCATCGGGGTGCCATCGTCGGAGCATCGGAAGAG
66 CTCGAGCATGTGCTGGTGTCACATTTTTCTTTC-TCGGGGCACCATCGTCGAAGCATCACCGGAG
* * *
4982120 AACTTGACCGACGACATTTGGGTTCCGACGATCGAGGGGG-TCGGGGGG-GTGCGCACATGATGT
130 AACCTGACCGACGGCATTAGGGTTCCGACGATCGAGGGGGCTCGGGGGGTGTGCGCACATGATGT
*
4982183 GCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTAGCCCTCATCAAACCTCGAA-AACTC
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAGCCCTCATCAAACCTC-AAGAACTC
*
4982247 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
4982312 ATTGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
4982377 TGTGCGTGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAA
* *
4982442 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTC
454 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
4982507 TTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
4982572 CATTGGCATGCAGAAATAATAAGATGTGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTG
584 CATTGGCATGCAGAAATAATAAGATGTGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTG
* * * *
4982637 CGTC-TCCAGTCTCTCTGGTCGGTGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCAGTT
649 CG-CATCCAGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * *
4982701 GGCTTATGATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGGCAGCAAGA
713 GGCTTAGGATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGTAGGA
* *
4982766 TTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCGGCT
778 TCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCGGCT
* * *
4982831 GAGCACCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATACCCAGTCTAA
843 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * *
4982892 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCAAGCGTTGCGGTAGCAGATGCTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCAAGGGTTACGACAGCACATGCTGGG
* * * *
4982957 CTCGGGCATGTGCTGGTGTCAC-TTTTTTTTTCCTCGGGGCACCATCGCCGGAGCATCACCGGAG
66 CTCGAGCATGTGCTGGTGTCACATTTTTCTTT-CTCGGGGCACCATCGTCGAAGCATCACCGGAG
* *
4983021 AACCTGATCGACGGCATTAGGGTTCCGACGATCGGGGGGGC-CGGGGGGGTGTGCGCATATGATG
130 AACCTGACCGACGGCATTAGGGTTCCGACGATCGAGGGGGCTC-GGGGGGTGTGCGC-----A--
4983085 TGCGATGAGTGTACGCATATGATGTGCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
187 --C-ATGA-TGT--GC----GA--T--G--G-GTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* **
4983150 GCCCTCATCAAACCTCGAGAACTCACACCCCCTTAGCGAGCATTTGAGATTTTACAGGTTTGCTG
235 GCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
4983215 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
300 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
4983280 TTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAATT
365 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * *
4983345 TTGGGGCCAAAACTCCTTTTGAAAACATTTTAAAAAATCCCGAACCGCATAAAGTTTCAAAAATT
430 TTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
* *
4983410 GTGAAAAAT-GGAAACGAGTCGTCTCGCCATGAAACTTCACGTGAAGGCTTACA-GGACCATTGT
495 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA-AGGGACCATTGT
*
4983473 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAATAAGATGTGCCTAAACCCACG
559 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAATAAGATGTGCCTAAACCCACC
* * *
4983538 AACCACCCGATCGATCCACGGCTTGCGCATCCAGTCTTTCTGGCCGGTGTAGT--------GCCC
624 TACCACCCGATCGATCCACGGCTTGCGCATCCAGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* *
4983595 GCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGATACAGAGTTCATTCCCAGTCTAAGATCGAACC
689 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGATACAGAGTTCATTCCCAGTCTAAGATCGGACC
* *
4983660 AGACTGAGGGTTACGGTAGTAGGATC-GCAGCACGCAGAGGGGGACCCGGTCGATCCCCAGCTTG
754 AGACCGAGGGTTACGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCAGCTTG
* * *
4983724 CGCATCTCACCCCTCTGGCTGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATAC
819 CGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
4983789 GGAGTTCATTCGCAGTCTAA
884 GGAGTTCATTCCCAGTCTAA
* *
4983809 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCAAGGGTTACGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCAAGGGTTACGACAGCACATGCTGGG
* *
4983874 CTCGAGCATGTGCTGGTGTCACTTTTTTC-TTCACCGGGGCACCATCGTC-AGAGCATCACCGGA
66 CTCGAGCATGTGCTGGTGTCACATTTTTCTTTC-TCGGGGCACCATCGTCGA-AGCATCACCGGA
** *
4983937 GAACCTGACCGACGGCATTAGGGTTCCGGTGATCGCGGGGGC-CGGGGGGTGTGCGCACATGATG
129 GAACCTGACCGACGGCATTAGGGTTCCGACGATCGAGGGGGCTCGGGGGGTGTGCGCACATGATG
* *
4984001 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAGCCCTCATCAAACCTCAAGAACTC
* **
4984066 ACACCCCCTAAAATTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
4984131 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTGTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
4984196 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTAT-GGGCCAAAAATCCTTTCGAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT-TGGGGCCAAAAATCCTTTCGAA
* **
4984260 AAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
453 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
4984325 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * *
4984390 GCATTGGCACACAGAAAT-ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCT
583 GCATTGGCATGCAGAAATAAT-AAGATGTGCCTAAACCCACCTACCACCCGATCGATCCACGGCT
* * * *
4984454 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTGTCGTCGGT
647 TGCGCATCCAGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * *
4984519 TGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGATTACGGCAATAG
712 TGGCTTAGG-ATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGTAG
* * * *
4984584 GATCGGCAGCACGCAGAGGGGGACCCGGTCGACCCCCGGCTTGCCCATCCCGCCCCTCTGGCCGG
776 GATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCGG
* * * *
4984649 CTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAA
841 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
4984712 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCAAGGGTTACGACAGCACATGCTGGG
* * * * *
4984777 CTCGGGCATGTGCTGGTG-CAGCAGTTTTCTTTGCT-GGGGCACCAACGTCGAAACATCCCCGGA
66 CTCGAGCATGTGCTGGTGTCA-CATTTTTCTTT-CTCGGGGCACCATCGTCGAAGCATCACCGGA
* * * * * *
4984840 GAACCTTACTGGCGGCATTGGGGTTCCGACGATCG-GGGGAGCTGGGGGGGGTGTGTGCACATGA
129 GAACCTGACCGACGGCATTAGGGTTCCGACGATCGAGGGG-GCT-CGGGGGGTGTGCGCACATGA
* * *
4984904 TGTGTGATGGGTGCTGGTA-TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAAC
192 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAGCCCTCATCAAACCTCAAGAAC
*
4984968 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTG
257 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
4985033 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTT
322 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * * *
4985098 TTAGAGCAAG-CAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCC-TACTG
387 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTC-G
*** * * * *
4985161 AAAAAATTTTAAAAAATTTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAGTAGAAAATGAGTC
451 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * *
4985226 GTCTTGCCATTAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAA-CAGATAAAA
516 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC-CATAAAA
* *
4985290 ATGGCATTGGCATGCAGAAAT-ATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
580 ATGGCATTGGCATGCAGAAATAAT-AAGATGTGCCTAAACCCACCTACCACCCGATCGATCCACG
* * **
4985354 GCTTGCGCATCCCA-TCTCTCTGGCAGGCGTACTGCCCATCCG-CCGCCCGCCCGCTCGTTTCGT
644 GCTTGCGCAT-CCAGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGT
*
4985417 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACG
708 CGGTTGGCTTAGG-ATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACG
4985479 ATAGCTCATG
Statistics
Matches: 2321, Mismatches: 206, Indels: 119
0.88 0.08 0.04
Matches are distributed among these distances:
892 284 0.12
893 156 0.07
895 1 0.00
897 1 0.00
899 2 0.00
900 5 0.00
901 168 0.07
902 147 0.06
903 506 0.22
904 178 0.08
905 40 0.02
906 4 0.00
907 1 0.00
908 1 0.00
911 1 0.00
912 1 0.00
913 4 0.00
914 3 0.00
916 16 0.01
917 262 0.11
918 91 0.04
920 2 0.00
922 1 0.00
924 1 0.00
925 1 0.00
926 162 0.07
927 282 0.12
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCAAGGGTTACGACAGCACATGCTGGG
CTCGAGCATGTGCTGGTGTCACATTTTTCTTTCTCGGGGCACCATCGTCGAAGCATCACCGGAGA
ACCTGACCGACGGCATTAGGGTTCCGACGATCGAGGGGGCTCGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAGCCCTCATCAAACCTCAAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAA
ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATAATAAGATGTGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTGCG
CATCCAGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
TTAGGATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGTAGGATCG
GCAGCACGCAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:4986333 original size:26 final size:26
Alignment explanation
Indices: 4986304--4986358 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
4986294 GTGGGTTGAC
*
4986304 CTAGGCATACGGAGTTCATTCCCAGT
1 CTAGGCATACAGAGTTCATTCCCAGT
4986330 CTAGGCATACAGAGTTCATTCCCAGT
1 CTAGGCATACAGAGTTCATTCCCAGT
4986356 CTA
1 CTA
4986359 AGATCAGACC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
CTAGGCATACAGAGTTCATTCCCAGT
Found at i:4989387 original size:886 final size:885
Alignment explanation
Indices: 4987050--4991276 Score: 5097
Period size: 900 Copynumber: 4.7 Consensus size: 885
4987040 GTTGGCTTAG
* * * * *
4987050 GCATACGGAGTTCATTCCCAGTCTAACATCGGACCAGACCGAGGGTTGCGACAGCTCATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA-GGTTGCGGCAGCACATGCTAGG
** *
4987115 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGAAGCATTGCCGGAGA
65 CTCGGGCATGTGCTGGTGCTACATTTTTCTTCATCGGGGCACCA----T----C---GCCGGAGA
* * * * *
4987180 ACCTGACCGACGGTATTGGGGTTCTAGCGATTGGGTGGGCCGGCGGGGGTGTGCGCACATGATGT
119 ACCCGACCGACGGCATTGGGGTTCCA-CGATCGGGGGGGCCGG-GGGGGTGTGCGCACATGATGT
* * * *
4987245 GCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCAAGAACACA
182 GCGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
4987310 CCCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTATAAAA
246 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
4987375 TGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
311 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
* * *
4987440 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAA
376 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAA
* * *
4987505 AATTTTAAAAAATCCCAAACCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCT
441 AATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * *
4987570 TGCCACGACACTTCACTTGAAGGCTTAAGGGACCATTGTCTGAATTTACAAGCCATAAAAATGGC
506 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
4987635 ATTGGCACACAGAAATAAT-ATGATGTGCCTAAACCCACCTACCATCCGATCGATCCACGGCTTG
571 ATTGGCACACAGAAAT-ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
4987699 CAC-TCCAGTCTCTCTGGCCAGTGTAGTGCCCGCCCGCCCGTCCGCCCGCCCGCTCGTTTCGTCA
635 CGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCG-CC-T------GCCCGCTCGTTTCGTCA
* *
4987763 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGGCCGAGGGTTGCAGTAGC
692 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGTAGC
* * * ** ** * *
4987828 AGGATTGGCACCACATAGAGGGGGACCCGGTCGATCCCTAGCTTGCGCATCTCGCCCCTCTGGCC
757 AGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCGA-CTTGCGCATCCCGCCCCTCTGGCC
* ** * * *
4987893 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGATTTCATTCCTAGTTTAA
821 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAA
* * * * **
4987958 ACATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGTGATAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA-GGTTGCGGCAGCACATGCTAGG
* * *** *
4988023 CTCGAGCATGTGCTGGTG-TCACTTTTTTCTTTGCCAGGGCACCATCGTCGGAGCATCATCGGAG
65 CTCGGGCATGTGCTGGTGCT-ACATTTTTCTTCATCGGGGCACCA---TC---G---C--CGGAG
* *
4988087 AACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
118 AACCCGACCGACGGCATTGGGGTTCC-ACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
4988151 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
182 GCGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
4988216 CACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCGGTAGCCAATAAAGTGTCTCGAA
246 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAA
* *
4988281 ATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTTTT
310 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
* ** * ** **
4988346 TATGCATGTGAACAAAAATACAAGTATCATGTCTACCAAGTTTGGGGTGAAAACTCCTTTTGAAA
375 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAA
* * **
4988411 AAATTTTCAAAAATCTCGAACCGCAAAATA-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
440 AAATTTTAAAAAATCCCGAACCATAAAA-AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
4988475 CTTGCCATGAAACTTCACATGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
504 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
4988540 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACGCACCTACCACCTTATCGATCCACGGCTT
569 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
4988605 GCGCATCCCGTCTCTCTTGCCGGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCAGTTGGCT
634 GCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCAGTTGGCT
* * ** *
4988670 TAGGCATAGGGAGTTCATTCCCAGTCTAAGA-CTGGACCGGACCGAGGGTTGTGGCAGCAGGATC
699 TAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCAGACCGAGGGTTGCAGTAGCAGGATC
* *
4988734 GACAGCACGCAGAGGGGGACCCGACCGATCCTCGACTTACGCATCCCGCCCCTCTGGCCGACTGA
763 GACAGCACGCAGAGGGGGACCCGACCGATCC-CGACTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
4988799 GCGCCCGCACGCTCGTTTTGTGGGTTGACTTATGCATACAAAGTTCATTCCCAGTCTAA
827 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAA
* * **
4988858 GCATACGGAGTTCATTCCCAAT-TAAGATCAGACCGGACCGAGTGTTGCGGTGGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG-GTTGCGGCAGCACATGCTAGG
* * * * *
4988922 CTCGGGCATGTGCTGGTGCTGCATTTTTCCTCGTTGGGGCACCATCGCCGAAGAACCCGACCGAC
65 CTCGGGCATGTGCTGGTGCTACATTTTTCTTCATCGGGGCACCATCGCCGGAGAACCCGACCGAC
* *
4988987 AGAATTGGGGTTCCACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
130 GGCATTGGGGTTCCACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* ** *
4989052 GTACTTGGCCCTTATATAT-TCCCCTATCCCTCATCAAAAATCGAGAACTCACACCCCCTTAAAA
195 GTACTTGGCCCTTATAT-TGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
4989116 AGTATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGACACTTTT
259 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
4989181 TTCAAATGGTCACAAAGTCTTGTACACTTTGAGCTTTTAGCTGATTTTTTTTGTGCATGCCAACA
324 TTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * *
4989246 AAAACACAAGGATCACGTCTACCATGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAAT
389 AAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAAT
4989311 CCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
454 CCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
*
4989376 CACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATC-CAG
519 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-CACAG
*** * * * * *
4989440 AAATATGAAGATGTGGAAAAATCCACCTATCACCCTATCGATCCACGGGTTGCGCATCTCATCTC
583 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* *
4989505 TCTGGCC-GACGTAGTGCCCGCCAGCCTGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATAC
648 TCTGGCCAG-CGTAGTGCCCGCCCGCCTGCCCG--C--TCGTTTCGTCAGTTGGCTTAGGCATAC
* * * * * *
4989569 GGAGTTCATTCCCTGTCTAAGATCGGATCAAACTGAGGGTTGCAGTAGTAGGATTC-ACAGTACG
708 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGTAGCAGGA-TCGACAGCACG
* * * ** * * * *
4989633 CAGAGGGGGACCTGACCAATCCCCGACCTGCGCATCCCATCGCTTTGGACGGCTGAGCGCCTGCA
772 CAGAGGGGGACCCGACCGAT-CCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
*** *
4989698 CGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCAAA
836 CGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAA
* * *
4989748 GCATACGGAGTTCATTCCCAGTCTAAGATCTGACTAGACCGAGGTTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG-TTGCGGCAGCACATGCTAGG
* * * * *
4989813 CTCGGGCATGTG-TTGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCAGAGA
65 CTCGGGCATGTGCTGGTGCTACATTTTTCTTCATCGGGGCACCATCGCCGGAG-AAC--C--CG-
* * *
4989877 ACCTGACCGGGGCATTGGGGTTCCGACGATCTGGGGGGTC-GGGGGGTGTGCGCACATGATGTGT
124 ACC-GA-C--GGCATTGGGGTTCC-ACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* *
4989941 GATGGGTGCTGGTACTTGG-CCTTATATTGGGCCCCTATCCCTCATCAAGCCTCGAGAACTCACA
184 GATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
4990005 CCCCCTTAAGGAGGATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
248 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
4990070 GGGACACTTTTTTCAAATGGTCACAAAATATCGTACACTTTGAGTTTTGAGCTGATTTTTTTTTT
313 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGA--ATTTTTTT
* * *
4990135 GTGCATGCCAGCAAAAACACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACTCCTTCTGAAAA
376 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAA
* * *
4990200 AATTTTAAAAAATCCTGAACC-TCAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTC
441 AATTTTAAAAAATCCCGAACCAT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
4990264 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCACAAAAATGG
505 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
4990329 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA-CACCCTATTGATCCACGGCTTG
570 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
4990393 CGCATCCCGTCGCTCTAGCCAGCGTAGTGCCTG--C-CC-GCCCGCTCGTTTCATC-GATTGGCT
635 CGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCAG-TTGGCT
* * * * * * * *
4990453 TAGGCATATGAAGTTCATTCCCAGTCTAAGATTGGACCAGATCAAGGGTTGCGGTATCAAGATCG
699 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGTAGCAGGATCG
* * * * * * *
4990518 GCAGCATGCAGAAGGGGACCCGATCGAT-CCGTAGTTGTGCATCCTGCCCCTCTGGCCGGCTGAG
764 ACAGCACGCAGAGGGGGACCCGACCGATCCCG-ACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
*
4990582 CTCCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
828 CGCCCGCACGCTCGTTTCGTGG---G---T-----T---GA---C-TT---AG-----GCATACA
4990647 AAGTTCATTCCCAGTCTAA
867 AAGTTCATTCCCAGTCTAA
* ** * *
4990666 GCATA-GAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAAGGTTACGGCAGCACATACTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG-AGGTTGCGGCAGCACATGCTAGG
* * *
4990730 CTCAGACATGTGTTGGTG-TCACATTTTTCTTCATCGGGGCACCATCGTCGAAGCATCGCCGGAG
65 CTCGGGCATGTGCTGGTGCT-ACATTTTTCTTCATCGGGG---CA----C----CATCGCCGGAG
* * * *
4990794 AACCTGACCGGCGGCATTGGGGTTCCATTGATC-GGGGGGTCGAGGGGGGTGTGCGCACATGATG
118 AACCCGACCGACGGCATTGGGGTTCCA-CGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATG
*
4990858 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
181 TGCGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
4990923 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGACTAAA
245 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
4990988 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTT
310 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
* * *
4991052 TGTGCATGCCAACAAAAATACAAGGATCATGTCCACCAACTTTGGGGCCAAAACTCCTTCCGAAA
375 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAA
* * * * *
4991117 AAATTTTAAAAAATCACGAACCGCA-AAAAATTTTCAAAAATCGTGAAAAATAAAAAATGAGTCG
440 AAATTTTAAAAAATCCCGAA-C-CATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * *
4991181 TCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTATGAATTTATAGGCCATAAAAAT
503 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
4991246 GGCATTGGCACGCAGAAATATGAAGATGTGC
568 GGCATTGGCACACAGAAATATGAAGATGTGC
4991277 TAGTGCCGCA
Statistics
Matches: 2888, Mismatches: 334, Indels: 183
0.85 0.10 0.05
Matches are distributed among these distances:
885 2 0.00
886 331 0.11
887 100 0.03
888 79 0.03
889 1 0.00
890 224 0.08
891 56 0.02
892 46 0.02
893 87 0.03
895 3 0.00
896 5 0.00
897 7 0.00
898 6 0.00
899 77 0.03
900 398 0.14
901 63 0.02
902 227 0.08
903 3 0.00
906 142 0.05
907 297 0.10
908 162 0.06
909 2 0.00
910 2 0.00
913 2 0.00
917 59 0.02
918 144 0.05
919 145 0.05
920 43 0.01
921 155 0.05
922 1 0.00
923 3 0.00
924 1 0.00
925 1 0.00
926 1 0.00
928 2 0.00
929 11 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (885 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGTTGCGGCAGCACATGCTAGGC
TCGGGCATGTGCTGGTGCTACATTTTTCTTCATCGGGGCACCATCGCCGGAGAACCCGACCGACG
GCATTGGGGTTCCACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
CGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCAGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGAGGGGG
ACCCGACCGATCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
GTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAA
Found at i:4990681 original size:25 final size:26
Alignment explanation
Indices: 4990622--4990691 Score: 124
Period size: 26 Copynumber: 2.7 Consensus size: 26
4990612 AGGCATACGG
4990622 AGTTCATTCCCAGTCTAAGCATACAA
1 AGTTCATTCCCAGTCTAAGCATACAA
*
4990648 AGTTCATTCCCAGTCTAAGCATA-GA
1 AGTTCATTCCCAGTCTAAGCATACAA
4990673 AGTTCATTCCCAGTCTAAG
1 AGTTCATTCCCAGTCTAAG
4990692 ATCAGACTGG
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
25 20 0.47
26 23 0.53
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (26 bp):
AGTTCATTCCCAGTCTAAGCATACAA
Found at i:4992730 original size:4 final size:4
Alignment explanation
Indices: 4992721--4992773 Score: 63
Period size: 4 Copynumber: 13.5 Consensus size: 4
4992711 CCGACGTAGT
* * * *
4992721 GCCC GCCC G-CC GCCC ACCC GCCC GCCC GCCT GCCC ACCC GCCT GCCC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GCCC GCCC GCCC GCCC GCCC
4992768 GCCC GC
1 GCCC GC
4992774 TTGTTTTTTC
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
3 3 0.08
4 37 0.93
ACGTcount: A:0.04, C:0.70, G:0.23, T:0.04
Consensus pattern (4 bp):
GCCC
Found at i:4994806 original size:26 final size:26
Alignment explanation
Indices: 4994755--4994807 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4994745 GTTGACTTAG
*
4994755 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAACCTAA
* *
4994781 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGAAGTTCATTCCCAACCTAA
4994807 G
1 G
4994808 ATTGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAACCTAA
Done.