Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 37 of 129
Found at i:4995143 original size:900 final size:900
Alignment explanation
Indices: 4992054--4995539 Score: 4599
Period size: 899 Copynumber: 3.8 Consensus size: 900
4992044 GTTAACTTAG
* * * * **
4992054 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGATGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGAACCGAGGGTTACGGCAGCACATGCTGGG
* * *
4992119 ATCGGGCATGTGCTAGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 ATCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* *
4992184 ACCTGACCGGCGGCATTGGGGTTCCAGCGATC----GG--GGGGGTTGTGCGCACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCG
* * *
4992243 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
* * *
4992308 CCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * * *
4992373 ATACA-CTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTTA
326 AGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
* * * * *
4992437 CGTGCCAACAAAAATACTAGGATCACGTCTACCAAGTTTGGGTCCAAAAAGCCTTCCGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAAT
** * * *
4992502 TTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTATTGC
456 TTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCATGAAAAAAAGAAAACGAGTCGTCTTGC
* * * *
4992567 CACGAAACTTCATGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAAAGACATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATT
* * **
4992632 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTTATGCA
586 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
*
4992697 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCGCCCACCCGCCCGCCCGCCTGCCCACCCGC
651 TCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-CCG----CTCGCCCGCCCG-CT---CA-----
** * * * * * * *
4992762 CTGCCCGCCCGCTTGTTTTTTCGGTTGGCATAGGATTACGGAGTTCATTCCCAGTATAAGATCAG
700 -T-TTCGTCAG-TTG-----GC-CTAGGCAT---A-TA--GAGTTCATTCCCAGTCTAAGATCGG
* * * *
4992827 ACTAGACCAAAGG-GATGCGGCAGCAGGAT-AGGCAGCACGCAGAGGGGGACTCGGCCTATCCCC
750 ACTAGACCGAAGGTTAT--GGCAGCAGGATCA-GCAGCACGCAGAGGGGGACCCGGCCGATCCCC
* * * *
4992890 CGCTTGCGCATCC-CGTCCCTCTGGCCGGTTGAGCACCCGCACACTCGTTTCATGGGTTGACTTA
812 GGCTTGCGCATCCAC--CCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGT-GGTTGACTTA
* *
4992954 GGCATACGGAGTTCATTCCCAGTCAAA
874 GGCATACGAAGTTCATTCCCAGTCTAA
* * *
4992981 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGAACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
4993046 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCCCCGGAGA
66 ATCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * * *
4993111 ACATGAACGGCGGCATTGGGGTTCTGACGATCGGGGGGCCGGGGGGTGTGCTCACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCG
*
4993176 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
196 ATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
* *
4993241 CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
4993306 GGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
326 AGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
*
4993371 CATGCCAACAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAAT
* *
4993436 TTTAAAAAAT-CTCGAACCGCAAAAAGTTTCCAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
456 TTTAAAAAATCCT-GAACCGCAAAAAGTTTCGAAAATCATGAAAAAAAGAAAACGAGTCGTCTTG
* **
4993500 CCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAAAGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCAT
* * *
4993565 TAGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
4993630 ATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCTCGCCGGCCCGCTC-TTTTGTCGGTTGGCC
650 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGCCCGCCCGCTCATTTCGTCAGTTGGCC
* * * **
4993694 TAGGCATA-CGAAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGATAGCAGGATC
715 TAGGCATATAG-AGTTCATTCCCAGTCTAAGATCGGACTAGACCGAAGGTTATGGCAGCAGGATC
** * * *
4993758 AGTGGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCAGCCCCTCTAGCC-GTTGA
779 AGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCA-CCCCTCTGGCCGGTTGA
* *
4993822 GCGCCCACACGCTCGTTTCGTGGCTTGACTTAGGCATACTAAGTTCATTCCCAGTCTAA
843 GCGCCCGCACGCTCGTTTCGTGG-TTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * *
4993881 GCATACGGAGTTCATTCCCAGCCTAAGATCAGACTGAACCGAGGGTTACGGTAGCATATGCTTGG
1 GCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGAACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
4993946 CT-GGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCGGAGA
66 ATCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* ** * *
4994010 ACTTGACCGGCGGCATTGCTGCTCCGGCGATCGGGGGGTCGGGGGGTGTGCGCATATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCG
* *
4994075 ATGGCTGCCAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
196 ATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
* * *
4994140 CCCCTTAAAGAGCATTTAAGATTTTACATGTTTGCTACCAGTAGCCATTAAATTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
4994205 AGACATTTTTTTCAAATGGTAACAAAATCTTTTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
326 AGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
* *
4994270 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTCCAAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAAT
** *
4994335 TTTAAAAAATCCTGAACCATAAAAAGTTTCGAAAATCATTAAAAAAAGAAAACGAGTCGTCTTGC
456 TTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCATGAAAAAAAGAAAACGAGTCGTCTTGC
* *
4994400 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCA-T
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATT
* * * * *
4994464 GGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACAACCTTATCGATCCACGACTTGCGCA
586 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
4994529 TCCCGTCTTTCTGGCCGACATAGTGCCCGCTCGCTCGCCCGCCCGCTCATTTCGTCAGTTGGCCT
651 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGCCCGCCCGCTCATTTCGTCAGTTGGCCT
* * *
4994594 AGGCATATAGAGTTCATTCCCAATCTAAGATCGGACCAGACTGAAGGTTATGGCAGCAGGATCAG
716 AGGCATATAGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAAGGTTATGGCAGCAGGATCAG
* * * *
4994659 CAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATGCCACCCCTCTGGCCGGCTGAGC
781 CAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT-CCACCCCTCTGGCCGGTTGAGC
* *
4994724 GCCCGCACGCTCGTTTTGTAGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAA
845 GCCCGCACGCTCGTTTCGT-GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
** * *
4994781 GCATACGGAGTTCATTCCCAGCCTAAGATTGGACCGAACCGAGGGTTACGGTAGCACATGCTTGG
1 GCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGAACCGAGGGTTACGGCAGCACATGCTGGG
* ** *
4994846 -TTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGCCGAAGCATCGCCGGAGA
66 ATCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
4994910 ACCTGACCGACGGCATTGGGGTTCCGGCGATAGAGGGGGTCGGGGGGTGTGCGCACATGATGTAC
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCG-GGGGGTCGGGGGGTGTGCGCACATGATGTGC
*
4994975 GATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * *
4995040 -CCCCTTAAAGAGCATCTAAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
260 CCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
4995104 GGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAATTTTTTAT
325 GAGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
* *
4995169 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAA
*
4995234 GTTTAAAAAATCCTGAACC-CAAAAAGTTTCGAAAATCATGAAAAATAA-AAAACGAGTCGTCTT
455 TTTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCATGAAAAA-AAGAAAACGAGTCGTCTT
* * * * * * *
4995297 GCCATTAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGAGTTCACGAGGCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCA
* * * * *
4995362 TTGGCACGTAGAAATCTAAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCCTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * * * * *
4995427 CAT-CC--CTCTCTAGCCGACGCAGTTCGCACCCGC-CTGCCCGCACGTTCGTCTCATCAGTTGG
649 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTC-GCCCGCCCGCTCATTTCGTCAGTTGG
* ** * * * * *
4995488 CTTAGGCATACGGAGTTCATTCCCAGTGTAACATCAGACCAGACCGAGGGTT
713 CCTAGGCATATAGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAAGGTT
4995540 GCGACAGCAC
Statistics
Matches: 2291, Mismatches: 243, Indels: 80
0.88 0.09 0.03
Matches are distributed among these distances:
896 1 0.00
897 84 0.04
898 100 0.04
899 687 0.30
900 578 0.25
901 150 0.07
902 34 0.01
903 2 0.00
905 1 0.00
908 6 0.00
909 1 0.00
914 3 0.00
915 3 0.00
916 1 0.00
923 1 0.00
926 2 0.00
927 160 0.07
931 5 0.00
932 1 0.00
933 152 0.07
934 319 0.14
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGAACCGAGGGTTACGGCAGCACATGCTGGG
ATCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
AGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAAT
TTTAAAAAATCCTGAACCGCAAAAAGTTTCGAAAATCATGAAAAAAAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGCCCGCCCGCTCATTTCGTCAGTTGGCCT
AGGCATATAGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAAGGTTATGGCAGCAGGATCAG
CAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCACCCCTCTGGCCGGTTGAGCG
CCCGCACGCTCGTTTCGTGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:4997273 original size:26 final size:26
Alignment explanation
Indices: 4997243--4997293 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
4997233 GTTGACTTAG
*
4997243 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4997269 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
4997294 TGATCGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4998169 original size:909 final size:893
Alignment explanation
Indices: 4996366--4998917 Score: 3452
Period size: 883 Copynumber: 2.8 Consensus size: 893
4996356 TTTGACTTAG
* * ** * * * **
4996366 GCATACGGAGTTCATTCCCAGTCCAAGATCAGACCAGACCGAGGGTTGTGGCAGCTCATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGATTGCGACAGCAAATGCTGGG
* *
4996431 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGACA
66 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC--CGAAGA
* * * *
4996496 ACCTGAACGGCGGCATTGGGGTTCCGGCAATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTG
129 ACCTGAACGACGGCATTGGGGTTTC-G-TATCGAGGGGGCCGGGGGGGTGTGCGAACATGATGTG
*
4996561 CAATGGGTACTGGTACTTGCCCCTTTTATTGGCCCCTTATCCCTCATCAAACCTAGAGAACTCAC
192 CAATGGGTACTGGTACTTG-CCCTTATATTGGCCCC-TATCCCTCATCAAACCTAGAGAACTCAC
4996626 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
255 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
4996691 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
320 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
* * * *
4996756 TGCATGCCAACAAAAATAC-AGAGATCACGTCTACCAAGCTT-GGGGCCAAAACTCCTTCCAAAA
385 TGCATGCCAA-AAAAATACAAG-GATCATGTCTACCAAGCTTCGGGG-AAAAACTCCTTTC-GAA
*
4996819 AAATTTTAAAAAAT-TCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
446 AAATTTTAAAAAATCT-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
4996883 CCTGCCATGAAACTTCACATGAAGGCTTAAGGTACCATTGTATGAATTTACAAGCCATAAAAATG
510 CCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
4996948 GCATTGGCATGCAGAAATATGAAGCTATGCCGAAACCCACCTACCACCCTATCGATCCATGGCTT
575 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * * * *
4997013 GCGCATCCCGTCTCTCTGGCCGGTGTGGTGCCCGCCCGCACGCCTGCCCCTCGTTTCGTTGGCTG
640 GCGCATCCCGTCTCTCTGGCCGACGTGGTGCCCGCCC-CCCGCCCG-CCCTCGTTTCGTCGGTTG
* ** *
4997078 GCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGGTCAGATCGAGGGTTGCGGTAGCAGGA
703 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGATAGCAGGA
* * * * *
4997143 TTGGTAGCACGGAGACAATGATCCGACCAATCCTCGACTTACGCATCCCACCCCTCTAGCCGGCT
768 TCGGCAGCACGCAGACAAGGACCCGACCAATCCTCGACTTACGCATCCCACCCCTCTAGCCGGCT
* * * *
4997208 GAGCGCTCGCACACTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
833 GAGCGCCCGCACACTCGTTTCATGGGTTAACTTAGGCATACGGAGCTCATTCCCAGTCTAA
*
4997269 GCATACGGAGTTCATTCCCAGTCTATGATCGGATTGGACTGGACCGAGGATTGC-AGCAGCAAAT
1 GCATACGGAGTTCATTCCCAGTCTA--A---GATCGGACTGGACCGAGGATTGCGA-CAGCAAAT
* * * * *
4997333 GCTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTTTTTGTCGGGGCACCATCGTCGGAGCATCCC
60 GCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT--C
* * * *
4997398 CGAAGAACCTGATCGATGACATTGGGGTTTCGATGATCGAGGGGGCCGGGGGGGGTGTGCGTACA
123 CGAAGAACCTGAACGACGGCATTGGGGTTTCG-T-ATCGAGGGGGCC-GGGGGGGTGTGCGAACA
*
4997463 TGATGTGCAATGGGTACTGGTACTTAGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTAGAC
185 TGATGTGCAATGGGTACTGGTACTT-GCCCTTATATTGG-CCCCTATCCCTCATCAAACCTAGAG
* *
4997528 AACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
248 AACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
4997593 CTGAAATGGGGACACTGTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAT
313 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAT
* **
4997658 TTTTTTGTGCATGCCAAAGAAAATACAAGGATCATGTCTACC-AGGTTCGGGGGGAAACTCCTTT
378 TTTTTTGTGCATGCCAAA-AAAATACAAGGATCATGTCTACCAAGCTTCGGGGAAAAACTCCTTT
* * *
4997722 CGAGAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAATGAG
442 CGA-AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
*
4997787 TCGTCCTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
506 TCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* ** * *
4997852 AATGGGATTGGCACACAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACG
571 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
4997917 GCTTGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCTACTCGTTTCGCC
636 GCTTGCGCATCCCGTCTCTCTGGCCGACGTGGTGCCCGCCC-CCCGCCCGCC--CTCGTTTCGTC
*
4997982 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGA-CTGAGGGTTGCGATA
698 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATC-GAGGGTTGCGATA
* *** *** * *
4998046 GCAGGATCGGCAGCACTCAGAGGGGGACCCGATTGATCCTCGGA-TTGCGCATCCCACCCCTCTG
762 GCAGGATCGGCAGCACGCAGACAAGGACCCGACCAATCCTC-GACTTACGCATCCCACCCCTCTA
* * *
4998110 GCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGCTCATTCCCAGTC
826 GCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTAACTTAGGCATACGGAGCTCATTCCCAGTC
4998175 TAA
891 TAA
* * * *
4998178 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGATTGCGACAGCAAATGCTGGG
*
4998243 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGGCACCAT--T----G--T-CGAAGAAC
66 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCGAAGAAC
* * * * * * *
4998299 TTGACCGACGGCATTGGGG-TTC-TAACGA-----TCGGGGGGGTGTGGGAACATGATATGTAAT
131 CTGAACGACGGCATTGGGGTTTCGTATCGAGGGGGCCGGGGGGGTGTGCGAACATGATGTGCAAT
* * * *
4998357 GGGTGCTGGTGCTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
196 GGGTACTGGTACTT-GCCCTTATATTGG-CCCCTATCCCTCATCAAACCTAGAGAACTCACACCC
* *
4998422 CCTTAAAAAGCATTTGAGAATTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGG
259 CCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
4998487 ACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCA
324 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * *
4998552 CGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTCGGGCAAAAACTCC-CTCTGAAAAAATT
389 TGCC-AAAAAAATACAAGGATCATGTCTACCAAGCTTCGGGGAAAAACTCCTTTC-GAAAAATTT
* *
4998616 TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
452 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCCTGCCA
* *
4998681 TGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTACCAGCCATAAAAATGGCATTGG
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
4998746 CATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
582 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * *
4998811 CTGTCTCTCTGGCCGACGTGGTGCCCG---CCCGCACG--CTCGTTTCATGGGTTGACTTAGGCA
647 CCGTCTCTCTGGCCGACGTGGTGCCCGCCCCCCGCCCGCCCTCGTTTCGTCGGTTGGCTTAGGCA
*
4998871 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCG
712 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCG
4998918 GCAACACATG
Statistics
Matches: 1469, Mismatches: 154, Indels: 80
0.86 0.09 0.05
Matches are distributed among these distances:
875 64 0.04
876 1 0.00
879 7 0.00
883 445 0.30
884 21 0.01
889 4 0.00
890 1 0.00
892 3 0.00
893 23 0.02
896 1 0.00
898 1 0.00
902 1 0.00
903 24 0.02
904 72 0.05
905 2 0.00
907 5 0.00
908 348 0.24
909 436 0.30
910 10 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGATTGCGACAGCAAATGCTGGG
CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCGAAGAAC
CTGAACGACGGCATTGGGGTTTCGTATCGAGGGGGCCGGGGGGGTGTGCGAACATGATGTGCAAT
GGGTACTGGTACTTGCCCTTATATTGGCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCC
TTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAAAAAAATACAAGGATCATGTCTACCAAGCTTCGGGGAAAAACTCCTTTCGAAAAATTTTAAA
AAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCCTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGACGTGGTGCCCGCCCCCCGCCCGCCCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGATAGCAGGATCGGCAGCACGCA
GACAAGGACCCGACCAATCCTCGACTTACGCATCCCACCCCTCTAGCCGGCTGAGCGCCCGCACA
CTCGTTTCATGGGTTAACTTAGGCATACGGAGCTCATTCCCAGTCTAA
Found at i:4998192 original size:26 final size:26
Alignment explanation
Indices: 4998152--4998204 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4998142 GTTAACTTAG
4998152 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
* *
4998178 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
4998204 G
1 G
4998205 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:4999989 original size:714 final size:709
Alignment explanation
Indices: 4998178--5000126 Score: 2663
Period size: 710 Copynumber: 2.8 Consensus size: 709
4998168 CCCAGTCTAA
* * * * * * *
4998178 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAACACATGCTGGG
* * * * * * *
4998243 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGGCACCAT------TG--T---CGAAGA
66 CTCAGGCATGTGCTGGAGCCACATTTTTCTTCACCGAGGCACCATCACCGAAGCATCACCGAAGA
* * ** * * *
4998297 ACTTGACCGACGGCATTGGGGTTCTAACGAT--------CGGGGGGGTGTGGGAACATGATATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGT
* *
4998354 AATGGGTGCTGGTGCTTGGGCC-TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 GATGGGTGCTGGTACTT-GGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
4998418 ACCCCCTTAAAAAGCATTTGAGAATTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
4998483 GGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
* * ** * *
4998548 TGCACGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTCGGGCAAAAACTCCCTCTGAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGTGAAAACTCCTTCCGAAAAA
* * *
4998613 A-TTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
4998677 GCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTACCAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*** *
4998742 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCACACAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
4998807 CATCCTGTCTCTCTGGCCGACGTGGTGCCCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
649 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCACACTCGTTTCATCGGTTGACTTAG
* * *
4998868 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAACACATGCTGGG
* * * *
4998933 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCACCGAAGA
66 CTCAGGCATGTGCTGGAGCCACATTTTTCTTCACCGAGGCACCATCACCGAAGCATCACCGAAGA
* *
4998998 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGAGGGGGTGTGCACACATAATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGG-GGGGGTGTGCGCACATGATGTG
* * * * *
4999063 GGATGGGTGCTGGTACCTGG-CTCCTCTGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 TGATGGGTGCTGGTACTTGGCCT-TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
4999127 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * **
4999192 TGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGTAGGTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
4999257 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAACTCCTTCCGAAAA
389 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGTGAAAACTCCTTCCGAAAA
* ** * * *
4999322 AATTTTAAAAAATCCCGAACCGTGAAAAGTTTTAAAAATCACGAAAAATAAAAAATGGGTCGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
4999387 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGG
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
4999452 ATTGGCACACAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGC
583 ATTGGCACACAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
4999517 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCTCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTA
648 GCATCCCGTCTCTCTGGCCGACGTAGTG----CCCGCCCGCACACTCGTTTCATCGGTTGACTTA
4999582 G
709 G
* * * * * * *
4999583 GCATATGGAGTTCATTCCCAGTCTAGGATCAGACTGGACCTAGGGTTACGGTAGCAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAACACATGCTGGG
* ** * *
4999648 CTC-GAGCATGTGCTGGAGCCACATTTTTCTTCATCGAGGCACCATTGCCGAAGCATCGCCGGAG
66 CTCAG-GCATGTGCTGGAGCCACATTTTTCTTCACCGAGGCACCATCACCGAAGCATCACCGAAG
* * * * *
4999712 AACCTGACTGGTGGTATTGGTGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
4999776 GTGATGGGAGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GTGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
4999841 CACCCCCTTAAAGAGCATTTGCGATTTTACAGGTTTGCTGCCAGTAGACATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
4999906 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
* * *
4999971 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTT-GGTGCCAAACTCCTT-CGAAAA
389 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGTG-AAAACTCCTTCCGAAAA
* * *
5000034 CAATTTTAAAAAATCCTGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
453 -AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
5000099 TTGCCATGAAACTTCACGTGAAGGCTTA
517 TTGCCATGAAACTTCACGTGAAGGCTTA
5000127 TGGAGTTCCC
Statistics
Matches: 1107, Mismatches: 120, Indels: 41
0.87 0.09 0.03
Matches are distributed among these distances:
690 101 0.09
696 1 0.00
698 1 0.00
701 33 0.03
708 1 0.00
709 5 0.00
710 249 0.22
711 200 0.18
712 10 0.01
713 92 0.08
714 238 0.21
715 168 0.15
716 8 0.01
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (709 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAACACATGCTGGG
CTCAGGCATGTGCTGGAGCCACATTTTTCTTCACCGAGGCACCATCACCGAAGCATCACCGAAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGT
GATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGTGAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACACAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCACACTCGTTTCATCGGTTGACTTAG
Found at i:5002116 original size:906 final size:899
Alignment explanation
Indices: 5000132--5002489 Score: 3410
Period size: 906 Copynumber: 2.6 Consensus size: 899
5000122 GCTTATGGAG
** * *
5000132 TTCCCAGTCTAAGCATATGGAGTTCATTTCTGGTCTAAGATCGGATCAGAGCGAGGGTTGCGGCA
1 TTCCCAGTCTAAGCATATGGAGTTCATTTCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCA
* *
5000197 GCACATGCTGGGCTTGGGCATGTGCTGATGCCGCATTTTTCTTTATCGGGG-----CA-C----C
65 GCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGACCATCATCGGAGC
* * *
5000252 ATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTATGCGC
130 ATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCG-CGATCGAGGGGGTCGGGGGGTGTGCGC
5000317 ACATGAT-TAGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
194 ACATGATGT-GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
5000381 CGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
258 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
5000446 GTGT-TTGAAATTGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
323 GTGTCTT-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
5000510 TGAATTTTTTTGTGCATGCCAACAAAAAGACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
387 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACT
** * *
5000575 CCTTCGAAAACAATTTTAAAAAATCCTAAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
452 CCTTCGAAAA-AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTCAAAATCGTGAAAAATAGAAA
*
5000640 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
516 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCC
5000705 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
581 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * *
5000770 CCACGGCTTGCGCATCCCGCCTCTCTGGCAGGCGTAGTGGCCGCCTACCCGCCCGCCTGTTCGTT
646 CCACAGCTTGCGCATCCCGCCTCTCTGGCAGGCGTAGTGGCCGCCCACCCGCCCACCTGCTCGTT
*
5000835 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCTATCTAAGATCAGATCAGACTAAGGGTTGT
711 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCTATCTAAGATCAGATCAGACCAAGGGTTGT
* * * *
5000900 GGCAGCAGGATCGACAGCACCCAGAGGGGGACCCAGCTGATCCTCGGCTTGCGCATCCTGCCCTT
776 GGCAGCAAGATCGACAACACCCAGAGGGGGACCCAGCTGATCCCCGGCTTGCGCATCCCGCCCTT
* *
5000965 CTGGCCGGTTGAGCGGCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCA
841 CTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCA
* * *
5001024 TTCCCTA-TCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGTGGGTTGCGGC
1 TTCCC-AGTCTAAGCATATGGAGTTCATTTCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGC
* * * * ** * *
5001088 AGCACATGTTGGGCTCGTGCATGTGCTGGTGCCACATTTTTCTTCGCCGGTGTACCATCGTCGGA
64 AGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGG-GGACCATCATCGGA
* * * ** * * *
5001153 GCTTCGCCGGAGAACCTGACCGACGGCATCAGGGTTCCGGTGATTGAGGGGGTCGGGGGGTGTGG
128 GCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC-GCGATCGAGGGGGTCGGGGGGTGTGC
* * ** *
5001218 GCACATGATGTGCAATGGGTGCTGGTACTTGACCCTTATATTGGCAACCTATCCCTAATCAAACC
192 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
5001283 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAA
257 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
5001348 AGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
322 AGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * * *
5001413 TGAATTGTTTTGTGCATGACAACAAAAATACAAGGATCATGTCTAACAAGTTTGGGACC-AAACC
387 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACT
5001477 CCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTCAAAATCGTGAAAAATAGAAA
452 CC-TTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTCAAAATCGTGAAAAATAGAAA
* *
5001542 ACGAGTCGTCCTGCCATGAAACTTCACGTAAAGGCTTAAGAGACCATTGTATGAATTTACAAGCC
516 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCC
* *
5001607 ATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGAT
581 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * *
5001672 CCACAGCTTGCGCATCCCGTCTCTCTGGTC-GGCGTAGT-TCCTGCCCGCCCGTCCGCCTACCTG
646 CCACAGCTTGCGCATCCCGCCTCTCTGG-CAGGCGTAGTGGCC-GCCCACCCG--C-CC-ACCTG
* ** ** *
5001735 CTCGTTTCGTCGGTTGGCTTAGGCGTACGGAGTTCATTCCC-AGTCTAAGATTGGATTGGACCGA
705 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCTA-TCTAAGATCAGATCAGACCAA
* * ** * *
5001799 GGGTTGTGGCAGCAAGATTGGCAACATGCAGTGGGGGACCC-GGTCGATCCCCGGCTTGCGCATC
769 GGGTTGTGGCAGCAAGATCGACAACACCCAGAGGGGGACCCAGCT-GATCCCCGGCTTGCGCATC
* * **
5001863 CCGTCCC-TCTGGCCGGCTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATATGGAGT
833 CCG-CCCTTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGT
5001927 TCA
897 TCA
* * *
5001930 TTCCCAGTCTAAGCATACGAAGTTCATTTCCAGTCTAAGATCAGACCAGACTGAGGGTTGGGGCA
1 TTCCCAGTCTAAGCATATGGAGTTCATTTCCAGTCTAAGATCAGACCAGAC-GAGGGTTGCGGCA
* * **
5001995 GCACATGCTGGTCTTGGGCATGTACTGGCACCGCATTTTTCTTCATCGGGGCACCATCATCGGAG
65 GCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGG-ACCATCATCGGAG
*
5002060 CATCGTCGGAGAACCTGACCGGCGTCATTGGGGTTCCAGCGATCGAGGGGGTCGGGGGGGTGTGC
129 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC-GCGATCGAGGGGGTC-GGGGGGTGTGC
*
5002125 GCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
192 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
5002190 TCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAA
257 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * *
5002254 AGTGTCTGAATTGGTGACACTTTTTTCAAATGGTCACAAAAT-TTGTACGCTTCGAGTTTTTAGC
322 AGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
*
5002318 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAAAAAGTTTGGGGCCAAAACT
387 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACT
* * *
5002383 CCTTCCAAAAATATTTTAAAAAATCCCGAACCGCTAGAAAG-CTTCAAAAATCGTGAAAAATAGA
452 CCTTCGAAAAA-ATTTTAAAAAATCCCGAACCG-TAAAAAGTTTTC-AAAATCGTGAAAAATAGA
5002447 AAACGAGTCGTCTTGGCCATGAAACTTCACGTGAAGGCTTAAG
514 AAACGAGTCGTCTT-GCCATGAAACTTCACGTGAAGGCTTAAG
5002490 GGNNNNNNNN
Statistics
Matches: 1297, Mismatches: 135, Indels: 52
0.87 0.09 0.04
Matches are distributed among these distances:
892 96 0.07
893 2 0.00
898 1 0.00
899 1 0.00
901 2 0.00
902 222 0.17
903 294 0.23
904 5 0.00
905 91 0.07
906 397 0.31
907 159 0.12
908 27 0.02
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (899 bp):
TTCCCAGTCTAAGCATATGGAGTTCATTTCCAGTCTAAGATCAGACCAGACGAGGGTTGCGGCAG
CACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGACCATCATCGGAGCA
TCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGCGATCGAGGGGGTCGGGGGGTGTGCGCAC
ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
TCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTT
CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTCAAAATCGTGAAAAATAGAAAACGAG
TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAA
AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACA
GCTTGCGCATCCCGCCTCTCTGGCAGGCGTAGTGGCCGCCCACCCGCCCACCTGCTCGTTTCGTC
GGTTGGCTTAGGCATACGGAGTTCATTCCCTATCTAAGATCAGATCAGACCAAGGGTTGTGGCAG
CAAGATCGACAACACCCAGAGGGGGACCCAGCTGATCCCCGGCTTGCGCATCCCGCCCTTCTGGC
CGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCA
Found at i:5003867 original size:26 final size:26
Alignment explanation
Indices: 5003830--5003882 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5003820 GTTGACTTAG
* *
5003830 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5003856 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5003882 G
1 G
5003883 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5005654 original size:26 final size:26
Alignment explanation
Indices: 5005625--5005677 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5005615 GTTGACTTAG
*
5005625 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5005651 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5005677 G
1 G
5005678 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5006097 original size:905 final size:899
Alignment explanation
Indices: 5003492--5006353 Score: 4144
Period size: 905 Copynumber: 3.2 Consensus size: 899
5003482 NNNNNNNNNN
* *
5003492 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATAAGAAGATGTGCCTA
1 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * *
5003557 AACCCACCTACCACCCTATCGATCCACGGCTTGCGTAGCCCGTCTCTTTGGCCGACGTAGTTCAC
66 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCG--G-CG-T-A-
* * *
5003622 GTCCGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTTAGGCATACGGAGCTCATTC
125 G--CGCCCGCCCACCCGCCCG---G-TCGTTTCGTCAGTTGGC-TTAGGCATACGGAGTTCATTC
** * * * *
5003687 CCAGTCTAAGATCAGACTAGACCGATGGTTGTCGCAGCAGGATCAGCAGCATGCCAGAGGGGACC
183 CCAGTCTAAGATCAGACCGGACCGA-GGTTGTGGCAGCAGGATCGGCAGCACG-AAGAGGGGACC
* * *
5003752 CGATCGATCCCCAGCTTGTTGCATTCTTGCCCCTCTGGCCGACTGAGCGGGCCCGCACGCTCG-T
246 CG-TCGATCCCCAGCTTG-CGCA-TCCTGCCCCTCTGGCCGGCTGAGC--GCCCGCACGCTCGTT
* *
5003816 T-GTGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATACGAAGTTCATTCCCAGTCT
306 TCGTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
*
5003880 AAGATTGGACCAGATCAAGGGTTGCGACAGCACATGCTGAGCTCGAGCATGTGCTGGTGCTGCAT
371 AAGATTGGACCAGATCGAGGGTTGCGACAGCACATGCTGAGCTCGAGCATGTGCTGGTGCTGCAT
* ***
5003945 TTTTCTTCACCGAGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGTTTTTC
436 TTTTCTTCATCGAGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTC
* * *
5004010 CAGTAATTGGGGGGCCGGGT-GGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCC
501 CGGTAATCGGGGGGCCGGGTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
5004074 CTTATATTGGCCCCCTATCCCTCTTCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
566 CTTATATTGGCCCCCTATCCCTCTTCAAACCTCGAGAACTCACTCCCCCTTAAAGAGCATTTGAG
* *
5004139 ATTTTACAGGTTTGCTGCCAGTCGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCT
631 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* ** *
5004204 CACAAAATGTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGGGAAAAAAAAAATACA
696 CACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT--GCCAAGAAAAATACA
* * * * **
5004269 AGGATCACGTCTACCTA-GTTTGGGGCCAAAAATCCTTCC-GAAAAATTTTTAAAAAAACCCGAA
759 AGGATCACCTCTACC-AGGTTTGGGGCCAAAACTCCTTCCAAAAAAAGTTTTAAAAAAACTTGAA
** * * * *
5004332 CCATAAAACGTTTTGAAAATCGTGAAAAATAGAAAACGATTCGTCTTGCCATGAAACTTCACGTG
823 CCGCAAAAAGTTTTGAAAATCATGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
*
5004397 AAGGCTTAAGGG
888 AAGGCTTAAGAG
*
5004409 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC--GCATAGAAATATGAAGATGTGGC
1 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC--AGAAATATGAAGATGTGCC
* * * * * *
5004472 TAAACCCACCAACCACCCTATCGATCCACGGCTTTCGCATCCCGTCCCTTTGGCCGTCGTTGTGC
64 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGCGC
* *
5004537 CCG----CCCG--C--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGA
129 CCGCCCACCCGCCCGGTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
** * * *
5004594 TCAGACCGGATTGAGGGTTGCGGCAGCAGGATTGACAGCACGAAGAGGGGGACCCGGTCGATCCC
194 TCAGACCGGACCGA-GGTTGTGGCAGCAGGATCGGCAGCACGAAGA-GGGGACCC-GTCGATCCC
** * * *
5004659 TGGCTTGCGCAACCCGCCCCTCAGGCCGGCTGAGC-CCCTGCACGCTCGTTTCGTGGGTTGACTT
256 CAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC-GCACGCTCGTTTCGT-GGTTGACTT
* * * * *
5004723 AGGCATATGAAGTTCATTGCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
319 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAG
* * * * * * ** *
5004788 ACCGAGGGTTGCGATAGCACATACTGGGCACGAGCATTTGCTGGTGCCACATTTTTCTTCATCGG
384 ATCGAGGGTTGCGACAGCACATGCTGAGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCATCGA
* * ** * * *
5004853 GGCACCATCGCCAGAGCATCGTCAGAGAACCTAACCGGCGACATTGGGGTTCCGGTCAA-C-GGG
449 GGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGT-AATCGGGG
* * * *
5004916 GG--GGCTGGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTTGCCCCTATATTGGCC
513 GGCCGGGTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
5004979 CCCTATCCCTCATCAAACCTTGAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
578 CCCTATCCCTCTTCAAACCTCGAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
5005044 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
643 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTG
5005109 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACCTCTAC
708 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACCTCTAC
*
5005174 CAGGTTTGGGGCCAAAACTCCTTCCAAAAAAAGTTTTAAAAAATCTTGAACCGCAAAAAGTTTTG
773 CAGGTTTGGGGCCAAAACTCCTTCCAAAAAAAGTTTTAAAAAAACTTGAACCGCAAAAAGTTTTG
5005239 AAAATCATGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAG
838 AAAATCATGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAG
* * *
5005301 ACCATTGTATGAATTTACTAGCCAAAAAAATGGCATTGGCATGCAGAACTATGAAGATGTGCCTA
1 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
*
5005366 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTTTGGCCGGCGTAGCGCCC
66 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGCGCCC
* *
5005431 GCCCACCCGCCCGGTCGTTTCGTCAGTTGGCTTAGGAATACGGAGTTCTTTCCCAGTCTAAGATC
131 GCCCACCCGCCCGGTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* *
5005496 AGACCGGACCGAGGTTTATGGCAGCAGGATCGGCAGCACGTAGAGGGTGACCCAGTCGATCCCCA
196 AGACCGGACCGAGG-TTGTGGCAGCAGGATCGGCAGCACGAAGAGGG-GACCC-GTCGATCCCCA
* *
5005561 GCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCGTCAGTTGACTTAGG
258 GCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT-GGTTGACTTAGG
* *
5005626 CATACGGATTTCATTCCCAGTCTAAGCATAGGGAGTTCATTCCCAGTCTAAGATTGGACCAGATC
322 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATC
* *
5005691 GAGGGTTGCGGCAGCACATGCTGAGCTCGAGCATGTGCTGTTGCTGCATTTTTCTTCATCGAGGC
387 GAGGGTTGCGACAGCACATGCTGAGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCATCGAGGC
* * * *
5005756 ACCATCATTGGAGCATCACCGGAGAACCTGACCGACGGGATTGGGGTTCCGGTAATCGGAGGGGC
452 ACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTAATCGG-GGGGC
5005821 CGGGTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
516 CGGGT-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
5005886 CTATCCCTCTTCAAACCTCGAGAACTCACTCCCACTTAAAGAGCATTTGAGATTTTACAGGTTTG
580 CTATCCCTCTTCAAACCTCGAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
5005951 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTA
645 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTA
5006016 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACCTCTACCA
710 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACCTCTACCA
*
5006081 GGTTTGGGGCCAAAACTCCTTCCAAAAAAAGTTTTAAAAAACCTTGAACCGCAAAAAGTTTTGAA
775 GGTTTGGGGCCAAAACTCCTTCCAAAAAAAGTTTTAAAAAAACTTGAACCGCAAAAAGTTTTGAA
5006146 AATCATGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAG
840 AATCATGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAG
* *
5006206 ACCATTGTATGAATTTACTAGCCATAAAAATGGCATTGGCATGCAGAACTATGAAGATGTGCCTA
1 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * * *
5006271 AACCCACCTACCACCCTATCGATCCACGACTTGCGCATCTCGTCTCTTTGGCCGACGTAACGCCC
66 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGCGCCC
* *
5006336 ACCCACCCGTCCGGTCGT
131 GCCCACCCGCCCGGTCGT
5006354 GATTTTTTAA
Statistics
Matches: 1744, Mismatches: 170, Indels: 74
0.88 0.09 0.04
Matches are distributed among these distances:
890 1 0.00
891 50 0.03
892 217 0.12
893 213 0.12
894 28 0.02
895 172 0.10
896 88 0.05
897 16 0.01
898 1 0.00
899 7 0.00
900 305 0.17
901 4 0.00
902 4 0.00
903 1 0.00
904 3 0.00
905 517 0.30
909 5 0.00
911 1 0.00
913 1 0.00
914 1 0.00
915 1 0.00
917 108 0.06
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGCGCCC
GCCCACCCGCCCGGTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
AGACCGGACCGAGGTTGTGGCAGCAGGATCGGCAGCACGAAGAGGGGACCCGTCGATCCCCAGCT
TGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGTTGACTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGG
GTTGCGACAGCACATGCTGAGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCATCGAGGCACCA
TCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTAATCGGGGGGCCGGGT
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCTTCAAACCTCGAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACCTCTACCAGGTTTG
GGGCCAAAACTCCTTCCAAAAAAAGTTTTAAAAAAACTTGAACCGCAAAAAGTTTTGAAAATCAT
GAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAG
Found at i:5006563 original size:238 final size:237
Alignment explanation
Indices: 5006133--5006584 Score: 656
Period size: 238 Copynumber: 1.9 Consensus size: 237
5006123 CTTGAACCGC
** *
5006133 AAAAAGTTTTGAAAATCATGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
1 AAAAAGTTTCAAAAATCATGAAAAAAAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGG
* ** ** * *
5006198 CTTAAGAGACCATTGTATGAATTTACTAGCCATAAAAATGGCATTGGCATGCAGAACTATGAAGA
66 CTTAAGAGACCAGTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGA
* *
5006263 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCTCGTCTCTTTGGCCGACG
131 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGAATCTCGTCTCTCTGGCCGACG
5006328 TAACGCCCACCCACCCGTCCGGTCGTGATTTTTTAAAATTTTT
196 TAACGCCC-CCCACCCGTCCGGTCGTGATTTTTTAAAATTTTT
* * *
5006371 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCATGTGAAGG
1 AAAAAGTTTCAAAAATCATGAAAAAAAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGG
* *
5006436 CTTAA-AGGACCAGTGTGTGAATTTAAAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAT
66 CTTAAGA-GACCAGTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAG
** *
5006500 ATGTGCCTAAACCCACCTATGACCCTATCGATCCACGGCTTGCGAATC-CAGTCTCTCTGGCCGA
130 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGAATCTC-GTCTCTCTGGCCGA
** *
5006564 CGTAGTGCCCCCCACCTGTCC
194 CGTAACGCCCCCCACCCGTCC
5006585 ACTCATTTCA
Statistics
Matches: 189, Mismatches: 23, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
237 12 0.06
238 177 0.94
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (237 bp):
AAAAAGTTTCAAAAATCATGAAAAAAAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGG
CTTAAGAGACCAGTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGAATCTCGTCTCTCTGGCCGACG
TAACGCCCCCCACCCGTCCGGTCGTGATTTTTTAAAATTTTT
Found at i:5006797 original size:26 final size:26
Alignment explanation
Indices: 5006767--5006819 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
5006757 GTTGACTTAG
*
5006767 GCATACGGAGTTTC-TTCCCAGTCTAA
1 GCATACAGAG-TTCATTCCCAGTCTAA
5006793 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5006819 G
1 G
5006820 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5008262 original size:26 final size:26
Alignment explanation
Indices: 5008233--5008285 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
5008223 TTTGACTTAG
5008233 GCATACAG-AGTTCATTCCCAGTCTAA
1 GCATA-AGAAGTTCATTCCCAGTCTAA
*
5008259 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATTCCCAGTCTAA
5008285 G
1 G
5008286 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATAAGAAGTTCATTCCCAGTCTAA
Found at i:5010952 original size:26 final size:26
Alignment explanation
Indices: 5010923--5010975 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5010913 GTTGACTTAG
5010923 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
* *
5010949 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
5010975 G
1 G
5010976 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:5011071 original size:893 final size:896
Alignment explanation
Indices: 5008111--5011332 Score: 4290
Period size: 892 Copynumber: 3.6 Consensus size: 896
5008101 GCCTAAACCG
*
5008111 GACTGAGGGTTG-AGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGC
1 GACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGC
* * * * ** * *
5008175 GCATCCCACCCATCTGG-CCAGCTGAGCACCCGTACAATCGTTTCGTGGTTTGACTTAGGCATAC
66 GCATCCCACCCCTCTGGTCGA-CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
* * *
5008239 AGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGGACCGGTCTGAGGG
130 GGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* * * * * *
5008304 TTGCGACAGAACATGCTGGGCTCGGGCATGTGCTGGTGTCGAATTTTTCTTCGTCGAGGCACCAT
195 TTACGACAGCACATGCTAGGCTCAGGCATGTGCTGGTG-CCAATTTTTCTTCGTCGGGGCACCAT
* * * * * *
5008369 CACTGGAGCATCATCGGTGAACCTGACCGACGGCGTTAGAGTTCCGACGATCGGGGGGGCCGAGG
259 CACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GG
** * *
5008434 GGGGTGTGCGCACAAAATGTGTGAGGGGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
323 GGGGTGTGCGCACATGATGTGCGA--TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
5008499 CTCATCAAACCTCGAGCACTCACACCCCCTTAAAGAGCATTT-AAGATTTTACAGGTTTGCTACC
386 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAA-ATTTTACAGGTTTGCTGCC
* *
5008563 A-TAGCCATTAAAGTGCCTAAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTT
450 AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * *
5008627 CGAGTTTTTGGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAGGTTC
515 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* *
5008692 GGGGCCAAAACTCCATCTGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTAGAAAATCAT
580 GGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTA-AAAATCGT
* * * * **
5008757 GAAAAATAAAAAACGAGTTGTCTTGCCTTGAACCTTCACGTGAATCCTTAAGGGA-CATTGTATG
644 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
** * *
5008821 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGCAATATGAAGATGTGCCTAAGCCCACCTAC
709 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
5008886 CACCCTATCGATCCACGACTTGCACATCCTGCCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCC
774 CACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGT----GCCCGCCCG--
*
5008951 CACCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCA
833 CACCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* ** * ** * * * **
5009015 GA-TCGAGGGTCGTGGCAGTAGGATCGATAGCACGCAGAGAGGGACCCGGCCGATCTCTGGCTTG
1 GACT-GAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTG
* * ** * * * * *
5009079 CGCTTTCTGCCCCTCTGGCCGACTGAGCGTCTGCAAGCTCGTTTCGTGGGTTGACTTAGGCATAC
65 CGCATCCCACCCCTCTGGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
* * *
5009144 GGAGTTCATTTCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTATGATCGGATCGGACCGAGGG
130 GGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* *
5009209 TTACGACAGCACATGCTAGACTCAGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGG------
195 TTACGACAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCA-ATTTTTCTTCGTCGGGGCACCAT
* * *
5009268 CA-C----CATCGTCAGAGAACCTGACCGGCGGTATTGGGGTTCCGACGATCGGGGGGGCCGGGG
259 CACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
* * * *
5009328 GTGGTGTGCGCACATGATGTGTGATGCGTGCTGGTACTTGGCCTTTATATT-GACCCCTATCCCT
324 G-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
5009392 CATCAAACCTCGAGAACTCAAACCCCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
388 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGT
* * * * *
5009457 AGCCATTAAAGTGTCTGAAATGGAGACATTTTTTTCAAATGGTTACAAAATCTTGTACAATTCGA
453 AGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * *
5009522 GTTCTTAGTTGAATTTTTTTATGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGG
518 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * * * * *
5009587 GCCAAAACTTCATCCG-AAAAATTTTTAAAAATCCTAAACCGTAAAAGGTTTGGATAATAGTAAA
583 GCCAAAACTCCATCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTT-AAAAATCGTGAA
5009651 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
647 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * *
5009716 TTACAAGACATAAAAATGGTATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCGACCAC
712 TTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * *
5009781 CCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGAACCCCCGC
777 CCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCG------CAC
* *** * *
5009846 CCGCTCGTTTCT-TCGGTTGGCTTAGGAATACGGAGTTTGCTCCCAGTCTAAGATCGGATCA
836 CCGCTCGTTT-TGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * *
5009907 GACTGAGGGTTACCA-CAGTAGGATCGGCACCATGCAGAGGGGGACCTGACCGATCCCCAGCTTG
1 GACTGAGGGTT-GCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTG
* * **
5009971 CGCATCCCACCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATCGGTTGACTTAGGCATTT
65 CGCATCCCACCCCTCTGGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
* * * *
5010036 GGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCGGACCGAGGG
130 GGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* * * *
5010101 TTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGAATTTTTCTTCGTCAGGGCACCAT
195 TTACGACAGCACATGCTAGGCTCAGGCATGTGCTGGTGCC-AATTTTTCTTCGTCGGGGCACCAT
* * * * * *
5010166 CGCCGGAGCATCGCCGGAGAACCTGATCGGCGGCATTTGGGTTCC-ATCGATC-AGGGGGCC-GG
259 CACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGG
*
5010228 GGGGTGTGCGCACATGATGTGCGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
323 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
5010293 CATCAAACCTCGAGAACTCA-ACCCCCTTAAAGAGCATTTGAAATTTTATAGGTTTGCTGCCAGT
388 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGT
*
5010357 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
453 AGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
5010422 GTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATGACGTCTACCAAGTTTGGG
518 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * *
5010487 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAA
583 GCCAAAACTCCATCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTT-AAAAATCGTGAA
* * * *
5010552 AAATAGAAAACGAGTCATCTCGCCATGAAACTTTACGTGAAGGCTTATGGGACCATTGTATGAAT
647 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *
5010617 TTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTACCTAAACCCACCTACCAC
712 TTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* *
5010682 CCTATCGATCCACGGCTTGCGCATCCTATCTCACTGGCCGGCGTAGTGCCCGCCCG-A-CCGCTC
777 CCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCACCCGCTC
* * *
5010745 GTTTTGTCGATTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCG
842 GTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * *
5010800 GACTGAGGGTTGCAGCAGCAGGATTGGCAGCACGCAGAGGGGGACGCGATCGATCCTCGGCTTGC
1 GACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGC
* * *
5010865 GCATCCCGCCCCTCTGGTCGACGGAGCGCCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACG
66 GCATCCCACCCCTCTGGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
* * *
5010930 GAGTTCATTCCAAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGT
131 GAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* ** * *
5010995 TATGGTAGCACATGCTAGGCTCAGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACTATC
196 TACGACAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCA-ATTTTTCTTCGTCGGGGCACCATC
* * ** *
5011060 ACCGAAGCATCGTCGGAGAACCTGACCGACAGCATTGGGGTTCCGGTGATC-GGGGGGTC-GGGG
260 ACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
5011123 GGTGTGCGCACATGATGTGCGATGGGTGCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
325 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * * *
5011187 TCAAACCTTGAGAACTCACACCCCCTTAACGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
390 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAG
*
5011252 CCATTAAAGTATCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
455 CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
5011317 TTTTAGCTGAATTTTT
520 TTTTAGCTGAATTTTT
5011333 CAAATGCCCG
Statistics
Matches: 2021, Mismatches: 261, Indels: 83
0.85 0.11 0.04
Matches are distributed among these distances:
888 9 0.00
891 153 0.08
892 583 0.29
893 484 0.24
894 66 0.03
898 1 0.00
899 3 0.00
900 221 0.11
901 246 0.12
902 8 0.00
903 38 0.02
904 11 0.01
905 196 0.10
906 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (896 bp):
GACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGC
GCATCCCACCCCTCTGGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
TACGACAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCAATTTTTCTTCGTCGGGGCACCATCA
CCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG
GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGC
CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
AAAACTCCATCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTAAAAATCGTGAAAAAT
AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
TCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCACCCGCTCGTTT
TGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
Found at i:5012440 original size:26 final size:25
Alignment explanation
Indices: 5012402--5012453 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
5012392 GTTGACTTAG
5012402 GCATACGAGTTCATTC-CTAGTCTAA
1 GCATACGAGTTCATTCGC-AGTCTAA
5012427 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATAC-GAGTTCATTCGCAGTCTAA
5012453 G
1 G
5012454 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 6 0.24
26 18 0.72
27 1 0.04
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGAGTTCATTCGCAGTCTAA
Found at i:5013326 original size:26 final size:26
Alignment explanation
Indices: 5013290--5013341 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
5013280 GTTGACTTAG
*
5013290 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5013316 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5013342 AATCGGACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5013674 original size:902 final size:896
Alignment explanation
Indices: 5011532--5014188 Score: 3761
Period size: 902 Copynumber: 3.0 Consensus size: 896
5011522 GTTGGCTTAG
* **
5011532 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * **
5011597 CTCAGGCATGTGTTGGTGCCGCGTTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTTAGTGGGGCACCAT--CCAGAGCATC-TCGGAGA
* * *
5011662 ACCTGACCGGCGGCATTGGGGTTCCGATGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
128 ACCTGACCGGCGGCATTGGGGTTTCGACGATC-GGGGGGCGGGGGGTGTGCGCACATGATGTGCG
*
5011727 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACAC
192 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * * * *
5011792 CCCCTTAAATAGCATTTGGGATTTTACAGATTTGCTGCTAGTAGCTATTAAAGTGTTTGAAATGG
257 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
5011857 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTG
322 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
5011922 CATGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAAT
387 CATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAAT
* * * * *
5011987 TTTAAAAAAT-TCCAAAC-TAAAAGGTTTCGAAAATCATAAAAAATAGAAAACGAGTCGTCTTGC
452 TTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
5012050 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATT
517 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
5012115 GGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
582 GGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * *
5012180 TCCCGTCTCTCTGACCGACGTAGT---TCCCGTCCGCCCGTCCGATCGTTTCATCGGTTGGCTTA
647 TCCCGTCTCTCTGGCCGACGTAGTGCCACCCGCCCGCCCGCCCGATCGTTTCGTCGGTTGGCTTA
** * * * *
5012242 GGTGTACGGAGTTCATTCCCAGTCTAAGA-CTGGACCAGACTGAGGGTTGCGGCAGTAGGATCGA
712 GGCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCGGACTGAGGGTTGCAGCAGCAAGATCGA
** * * *
5012306 CAGCACGCAGAGGGGGACCCAGTCGATCCCTGGCTTGCGCATCCCGCCCCTTTGGCCGGCTGAGT
776 CAGCACGCAGAGGGGGACCCAGTCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGG
5012371 GCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAGTTCATTCCTAGTCTAA
841 GCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAGTTCATTCCTAGTCTAA
* *
5012427 GCATACGGAGTTCATTCGCAGTCTAAGATCGGACCGGACGGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
5012492 CTCGAGCATGTGCTGGTGCCTCATTTTTC-TTCGTCGGGGCACCAT-C---G---C-CGGAGAAC
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTTAGT-GGGGCACCATCCAGAGCATCTCGGAGAAC
* * * * *
5012548 CTAACCGGTGGCATTGGGG-TTCCAGCGATCGGGGGGCCGGGGGTGTGCGCACATGATGTACGAT
130 CTGACCGGCGGCATTGGGGTTTCGA-CGATCGGGGGGCGGGGGGTGTGCGCACATGATGTGCGAT
* * *
5012612 GGGTGCTGGTACTTGGCCTTTATATTCGCCCCCTATCCCTCATCGAACCTCGAGAACTCACACCC
194 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
5012677 CCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAAATGGTG
259 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
5012742 ACACTTTTTTCATATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTATGCA
324 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
** * * *
5012807 TGCCAAAAAAAATACAAGGATCATGTCTAAAAAGTTTGGGGCCAAAACTCCTTCCGAAAATATTT
389 TGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTT
** **
5012872 T-AAAAATCTCGAACCGCAAAAAAATTCGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCA
454 TAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
5012936 TGAAACTTCACGTGAAGGCTTCAGGGACGATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
519 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* ** * * *
5013001 CATGAAGAAATATGAAGATGTGCCTAAACCCACCTACTGCCCTATCGATCCATGACTTGTGCATC
584 CATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
5013066 CCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCAGCCCGTTCGTTTCGTCGGTTGGCTTAG
649 CCGTCTCTCTGGCCGACGTAGTG-CCACCCGCCCGCCCGCCCGATCGTTTCGTCGGTTGGCTTAG
* *
5013131 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTGCAGCAGCAAGATCGACA
713 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAGCAAGATCGACA
* * ** ** *
5013196 GCATGTAGAGGGGGACCTGGTCGATCCCCAGCTTACTTATCCCGCCCCTCTGGTCGGCTGAGGGC
778 GCACGCAGAGGGGGACCCAGTCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGGGC
*
5013261 CCGCACGCTCGTTTTGTGTGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
843 CCGCACGCTCGTTTTGTGGGTTGACTTAGGCATAC-GAGTTCATTCCTAGTCTAA
* * * * *
5013316 GCATACGGAGTTCATTCCCAGTCTAAAATCGGACCAGACCGAGGGTTGCAGCAGCCCATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* *
5013381 CTCGGGCATGTGCTGGTGTCACATTTTTCTTTGGTGGGGCACCATCACTAGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTTAGTGGGGCACCATC-C-AGAGCATC-TCGGAGA
*
5013446 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGC
128 ACCTGACCGGCGGCATTGGGGTTTCGACGATC-GGGGGG-CGGGGGGTGTGCGCACATGATGTGC
* *
5013511 GATGTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAACTCACA
191 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
5013576 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
256 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
5013641 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
321 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*** *
5013706 GCATGCC-AAAAAAATACAAGGATCATGTCTACCAAGTTTGTCTCCAAAAGTCCTTCTGAAAAAA
386 GCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAA
* *
5013770 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
451 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
5013835 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATCACTTTACAAGCCA-AAAAATGGCAT
516 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
5013899 TGGCACGTAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCAATCCACGGCTTGCGC
581 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
5013964 ATCCCGTCTCTCTCGG-CGACATAGTGGCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
646 ATCCCGTCTCTCT-GGCCGACGTAGT-GCCACCCGCCCGCCCGCCCGATCGTTTCGTCGGTTGGC
* ** ** * * * *
5014028 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGTAGTAGGATT
709 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAGCAAGATC
* * * * * ** * *
5014093 GATAGCACGCAGAGGGGCACCCGGCCGATACCTGGCTTGCGCATCCCGCCCCTCCGGCCGGCTGA
774 GACAGCACGCAGAGGGGGACCCAGTCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCGGCTGA
* **
5014158 GCGCCCGCACGCTCGTTCCGTGGGTTGACTT
839 GGGCCCGCACGCTCGTTTTGTGGGTTGACTT
5014189 CGAGTTTGTA
Statistics
Matches: 1550, Mismatches: 184, Indels: 50
0.87 0.10 0.03
Matches are distributed among these distances:
882 6 0.00
883 276 0.18
884 211 0.14
886 1 0.00
888 175 0.11
889 115 0.07
890 4 0.00
891 1 0.00
892 1 0.00
894 1 0.00
895 95 0.06
898 1 0.00
900 29 0.02
901 316 0.20
902 318 0.21
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTTAGTGGGGCACCATCCAGAGCATCTCGGAGAACC
TGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTA
AAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGACGTAGTGCCACCCGCCCGCCCGCCCGATCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAGCAAGATCGACAGCA
CGCAGAGGGGGACCCAGTCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGGGCCCG
CACGCTCGTTTTGTGGGTTGACTTAGGCATACGAGTTCATTCCTAGTCTAA
Found at i:5014672 original size:509 final size:508
Alignment explanation
Indices: 5013677--5014697 Score: 1546
Period size: 509 Copynumber: 2.0 Consensus size: 508
5013667 AATCTTGTAC
* *
5013677 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCATGTCTACCAAG
1 ACTTCGAGTTTGTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAG
* * *
5013742 TTTGTCTCCAAAAGTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
66 TTTGGCGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
* * *
5013807 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGT
131 CATGAAAAATAGAAAAAGAGTCGTCCTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATCGT
* *
5013872 ATCACTTTACAAGCCAAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAGCCCACCT
196 ATCAATTTACAAGCCAAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAGCCCACCT
*
5013937 ACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTCGGCGACATAGTGGCCGCCCGCCCG
261 ACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTCGGCGACATAGTGGCCACCCGCCCG
* *
5014002 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
326 CCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * *
5014067 GGACCAAGGGTTGTGGTAGTAGGATTGATAGCACGCAGAGGGGCACCCGGCCGATACCTGGCTTG
391 GGACCAAGGGTTGTGGCAGCAGGATCGATAGCACGCAGAGGGGCACCCGACCGATACCCGGCTTG
* *
5014132 CGCATCCCGCCCCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTCCGTGGGTTG
456 CGCATCCCGCCCCTCCGGCCGACTGAGCGCCCGAACGCTCGTTCCGTGGGTTG
*
5014185 ACTTCGAGTTTGTAGCTGAATTTTTTTGTGCATGCCTACAAAAATACAAGGATCACGTCTACCAA
1 ACTTCGAGTTTGTAGCTGAATTTTTTTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAA
* * * *
5014250 TTTTGGGGCCAAAACTCCTT-TCGAGAAAATTTTAAAAAATCCCGAACCGCAAAAGGTTTCAAAA
65 GTTTGGCGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
* *
5014314 ATCATGAAAAATAGAAAAAGAGTCGTCCTGCCATGAAACTTCACATGAAGGCTTAAGGGACTATT
129 ATCATGAAAAATAGAAAAAGAGTCGTCCTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATC
* * *
5014379 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTTCCTAATCCCA
194 GTATCAATTTACAAGCCA-AAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAGCCCA
* * * * * *
5014444 CCTACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGGCGGCATGGT-GCCTATCCG
258 CCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTCGGCGACATAGTGGCC-ACCCG
*
5014508 CCCGCCCG-CCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
322 CCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * * *
5014572 GACCGGATCGAGGGTT-TCGGCAGCAGGATCGGTAGCACGTAGTGGGGGACCCGACCGATCCCCG
387 GACCGGACCAAGGGTTGT-GGCAGCAGGATCGATAGCACGCAGAGGGGCACCCGACCGATACCCG
** *
5014636 GCTTGCGCATCCCGCCCCTTTGGCCGACTGAGCGCCCGAACGCTCGTTTCGTGGGTTG
451 GCTTGCGCATCCCGCCCCTCCGGCCGACTGAGCGCCCGAACGCTCGTTCCGTGGGTTG
5014694 ACTT
1 ACTT
5014698 AGGCATACGG
Statistics
Matches: 461, Mismatches: 47, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
508 37 0.08
509 320 0.69
510 104 0.23
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (508 bp):
ACTTCGAGTTTGTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAG
TTTGGCGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
CATGAAAAATAGAAAAAGAGTCGTCCTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATCGT
ATCAATTTACAAGCCAAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAGCCCACCT
ACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTCGGCGACATAGTGGCCACCCGCCCG
CCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
GGACCAAGGGTTGTGGCAGCAGGATCGATAGCACGCAGAGGGGCACCCGACCGATACCCGGCTTG
CGCATCCCGCCCCTCCGGCCGACTGAGCGCCCGAACGCTCGTTCCGTGGGTTG
Found at i:5014739 original size:26 final size:26
Alignment explanation
Indices: 5014700--5014752 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5014690 GTTGACTTAG
5014700 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
* *
5014726 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
5014752 G
1 G
5014753 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:5015926 original size:897 final size:895
Alignment explanation
Indices: 5014185--5017449 Score: 4631
Period size: 897 Copynumber: 3.7 Consensus size: 895
5014175 CCGTGGGTTG
* *
5014185 ACTTCGAGTTTGTAGCTGAATTTTTTTGTGCATGCCTACAAAAATACAAGGATCACGTCTACCAA
1 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * *
5014250 TTTTGGGGCCAAAACTCCTT-TCGAGAAAATTTTAAAAAATCCCGAACCGCAAAAGGTTTCAAAA
66 GTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
* * * *
5014314 ATCATGAAAAATAGAAAAAGAGTCGTCCTGCCATGAAACTTCACATGAAGGCTTAAGGGACTATT
130 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
5014379 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTTCCTAATCCCA
195 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCA
* * * * * ***
5014444 CCTACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGGCGGCATGGTGCCTATCCGC
260 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
* * *
5014509 CCGCCCGCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
325 CCGCGC-CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * *
5014574 CCGGA-TCGAGGGTTTCGGCAGCAGGATCGGTAGCACGTAGTGGGGGACCCGACCGATCCCCGGC
389 CCGAACT-GAGGGTTACGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* * *
5014638 TTGCGCATCCCGCCCCTTTGGCCGACTGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCA
453 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCA
* * *
5014703 TACGGAGTTCATTCCCAGCCTAAGCATACGGATTTCATTCCCAGTCTAAGATCGGACCGGACCGA
518 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
* * * * * * * **
5014768 GGGATGCGACAGCACATGCTGGGCTCGAGCTTATGCTGATACCGTATTTTTCTTCACCGGGGAGC
583 GGGTTGCG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAATTTTCTTCGTC-GGG-GC
* * * *
5014833 CATCTCCGGAGCATCGCCGGAGAACCTGACTGACGGCATTGGGGTTCCGACGAT---CGGT-GGG
645 CA---CC---GCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATGGGGGGTCGGG
*** *
5014894 GCCAGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
704 GGTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
5014959 TCCCT-TATCAAACCTCGAGAACTCACAGCCCCTTAAAGAGC-----AGATTTTACAGGTTTGCT
769 TCCCTCT-TCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
5015018 ACCAGTAGCCATTAAAGTGTCTGAAATGGGGACGCTTTTTTCAAATGGTCACAAAATCTTGTAC
832 GCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
5015082 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC-AGTGATCACGTCTACCA
1 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG-GATCACGTCTACCA
* * *
5015146 AGTTTGGAGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAA
65 AGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
* *
5015211 ATCATGAAAAATAGAAAACGAGTCGTCTAGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATT
130 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* **
5015276 GTATGAATTTACAAGCCATAAAAATGGTATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCA
195 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCA
** * * *
5015341 CCTATAACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTTGTGACCGCCCGC
260 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
*
5015406 CCGCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGA
325 CCGC-GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * *
5015471 CCAAACTGAGGGTTACGGTAGTAGGATCGGCAGCACGCAGAGGGGGACCCAACTGATCCCCGGCT
389 CCGAACTGAGGGTTACGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
* * * * * *
5015536 TGCACAACCCGCCCGTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCGT
454 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * *
5015601 ACGGAGTTCATTCCAAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAG
519 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
* * * * *
5015666 GGTTGCAGCAACACATGCTGGGCTTGGGCATGTGTTGGTGCCGCAATTTACTTCGTCGGGG-CA-
584 GGTTGC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAATTTTCTTCGTCGGGGCCAC
* *
5015729 C-CATCACCGGAGAACCTGACCGGCGGCATTGGGTTTCCGGCGATTGGGGGGGTCGGGGGTGGGG
648 CGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA-T-GGGGGGTCGGGGGTGGGG
5015793 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCT
711 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCT
5015858 TCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAG
776 TCAAACCTCGAGAACTCACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAG
5015923 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
840 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
5015979 ACTTTGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAC-AAAATACAAGGATC-CTGTCTACCA
1 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC-GTCTACCA
** *
5016042 AGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
65 AGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
* *
5016107 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAACGCTTAAGGGACCATC
130 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
*
5016172 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCA
195 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCA
* * **
5016237 CCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTAGATGACGTAGTGCCCGCCCG-
260 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
*
5016301 CC-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
325 CCGCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * *
5016365 CGGACTGAGGGTTACGGCAGCAAGAACGGCAGC-CTGCAGAGGGGGACCCTG-CCGATCCCTGGC
390 CGAACTGAGGGTTACGGCAGCAAGATCGGCAGCAC-GCAGAGGGGGACCC-GACCGATCCCCGGC
*
5016428 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTAACTTAGGCA
453 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCA
* *
5016493 TACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGA
518 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
* * *
5016558 GGGTTGTGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCGGTAATTTTCTTCGTCGGGGCAC
583 GGGTTG-CGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAATTTTCTTCGTCGGGG--C
* *
5016623 CATCGCCGGAGCATCACCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGG-CCG
645 CA---CC---GCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT-GGGGGGTCGG
5016687 GGGTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCT
703 GGGTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
5016751 ATCCCTCTTCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
768 ATCCCTCTTCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
5016816 GCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
832 GCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
5016880 ACTTTGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCCCGTCTACCAA
1 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* *
5016945 GTTTGGGGCCAAAACTCCTTC-G----------AAAAAA-CTCGAACCGTAAAAAGTTTCAAAAA
66 GTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
* * *
5016998 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTGACGTGAGGGCTTAAGGGACCATTG
131 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
5017063 TATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAC
196 TATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCAC
5017128 CTACCACCCTATCGATCCA---C--G-G---CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
261 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * * * * **
5017184 CGCCCACCCGTTCGTTTCGTCGGTTGGCTTCGGCATACGGAGTTCATTCCCAATCTAAGATTGGA
326 CG--CGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * *
5017249 CCGAACCGAGGGTTGCGGCAGCAAGATCGACAGCACGTAGAGGGGGACCTGATCGATCCCCGTCT
389 CCGAACTGAGGGTTACGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
*
5017314 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGACAT
454 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCAT
*
5017379 ACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
519 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
5017444 GGTTGC
584 GGTTGC
5017450 TGTAGTAGGA
Statistics
Matches: 2149, Mismatches: 176, Indels: 99
0.89 0.07 0.04
Matches are distributed among these distances:
881 29 0.01
882 2 0.00
884 2 0.00
885 236 0.11
886 38 0.02
887 2 0.00
890 167 0.08
891 12 0.01
892 100 0.05
893 283 0.13
894 3 0.00
895 4 0.00
896 264 0.12
897 678 0.32
898 4 0.00
900 1 0.00
901 169 0.08
902 108 0.05
903 8 0.00
904 39 0.02
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (895 bp):
ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
GTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
CGCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
GAACTGAGGGTTACGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG
TTGCGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAATTTTCTTCGTCGGGGCCACCGC
ATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATGGGGGGTCGGGGGTGGGGGGTGT
GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAA
CCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
Found at i:5016519 original size:26 final size:26
Alignment explanation
Indices: 5016490--5016542 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5016480 GTTAACTTAG
5016490 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5016516 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5016542 G
1 G
5016543 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5017412 original size:26 final size:26
Alignment explanation
Indices: 5017376--5017427 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
5017366 TTGACTTAGA
5017376 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
*
5017402 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
5017428 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:5017609 original size:184 final size:185
Alignment explanation
Indices: 5017216--5017614 Score: 575
Period size: 184 Copynumber: 2.2 Consensus size: 185
5017206 GTTGGCTTCG
* **
5017216 GCATACGGAGTTCATTCCCAATCTAAGATTGGACCGAACCGAGGGTTGCGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAAGATCGACA
* * * * * *
5017281 GCACGTAGAGGGGGACCTGATCGATCCCCGTCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
66 GCACGTAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCACCCCTCTAGCCGACTGAGCGC
*
5017346 CCGTACGCTCGTTTCGTGGGTTGACTTAGACATACAGAGTTCATTCCCAGTCTAA
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGACATACAGAGTTCATTCCCAGTCTAA
* * * * *
5017401 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCTGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAAGATCGACA
* * * * *
5017466 GCATGTAGAGGGGGACCCGGTCGATCCCTGGCTTACGCAT-CCATCCCTCTAGTCGACTGAGCGC
66 GCACGTAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCACCCCTCTAGCCGACTGAGCGC
* * *
5017530 CCGCACGTTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAA
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGACATACAGAGTTCATTCCCAGTCTAA
*
5017585 GCATACGGAGTTCATTCTCAGTCTAAGATC
1 GCATACGGAGTTCATTCCCAGTCTAAGATC
5017615 GGATCAGACT
Statistics
Matches: 190, Mismatches: 24, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
184 99 0.52
185 91 0.48
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.24
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAAGATCGACA
GCACGTAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCACCCCTCTAGCCGACTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGACATACAGAGTTCATTCCCAGTCTAA
Found at i:5019206 original size:26 final size:26
Alignment explanation
Indices: 5019176--5019228 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5019166 GTTGACTTAG
5019176 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5019202 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5019228 G
1 G
5019229 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5022842 original size:157 final size:158
Alignment explanation
Indices: 5022550--5022925 Score: 442
Period size: 157 Copynumber: 2.4 Consensus size: 158
5022540 CCGCCCGCCT
* ** *
5022550 GCCCGC-CTGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTATATTCGTAGTCTAATATCAGA
1 GCCCGCAC-GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT-TATTCCAAGTCTAAGATCAGA
* * * *
5022614 TGGGACCGAGGGTTACGACAGTAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCCCAGCT
64 TGAGACCAAGGGTTACGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCAGCT
* *
5022679 TGCGCATCTCGCCACTCTGGCCGGCTGAGC
129 TGCGCATCCCGCCACTCTGGCCGACTGAGC
* **
5022709 GCCCGCACGCTCGTTTCGTCCATTGGCTTAGGCATACGGAGTTATTCCAAGTCTAAGATCAGACT
1 GCCCGCACGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTATTCCAAGTCTAAGATCAGA-T
* *
5022774 -AGACCAAGGGTT--GTAGCAGCA-GATCGACAGCACGCAGAGGGGGACCCGGCCGATCCACTA-
65 GAGACCAAGGGTTACG-A-CAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCC-CCAG
* * *
5022834 CTTTCGCATCCCGCCCCTCTGGTCGACTGAGC
127 CTTGCGCATCCCGCCACTCTGGCCGACTGAGC
* ** *
5022866 ACCCGCACGCTCGTTTCAT-GGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
1 GCCCGCACGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT-ATTCCAAGTCTAAGATC
5022926 GGACCGGACT
Statistics
Matches: 186, Mismatches: 25, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
156 20 0.11
157 94 0.51
158 34 0.18
159 37 0.20
160 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.22
Consensus pattern (158 bp):
GCCCGCACGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTATTCCAAGTCTAAGATCAGATG
AGACCAAGGGTTACGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTG
CGCATCCCGCCACTCTGGCCGACTGAGC
Found at i:5023813 original size:25 final size:26
Alignment explanation
Indices: 5023762--5023813 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
5023752 GTTGACTTAG
5023762 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
5023788 GCATATGGAGTTC-TTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5023813 G
1 G
5023814 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5024615 original size:26 final size:26
Alignment explanation
Indices: 5024579--5024631 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5024569 GTTGACTTAG
5024579 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5024605 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5024631 G
1 G
5024632 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5025568 original size:26 final size:26
Alignment explanation
Indices: 5025532--5025587 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
5025522 TGGGTTGACT
*
5025532 TAAGCTTATGGAGTTCATTCCTAGTC
1 TAAGCATATGGAGTTCATTCCTAGTC
5025558 TAAGCATATGGAGTTCATTCCTAGTC
1 TAAGCATATGGAGTTCATTCCTAGTC
5025584 TAAG
1 TAAG
5025588 ATCGAATCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.36
Consensus pattern (26 bp):
TAAGCATATGGAGTTCATTCCTAGTC
Found at i:5027801 original size:717 final size:716
Alignment explanation
Indices: 5026422--5028656 Score: 3038
Period size: 717 Copynumber: 3.1 Consensus size: 716
5026412 CGTGGGTTGA
* * *
5026422 CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATG
* *
5026487 ATGGGCTCGGGCATGTCCTGGTGCCAG-ATTTTTCTTCGTCGGGGCACCATCGTCGGAGAATCAT
66 ATGGGCTCGGGCATGTGCTGGTG-CAGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAT
* * ** **
5026551 CGGAGAACCTGATCGGTGACATTGGGGTTTTGACGATCGGGGGGGCCGGGGGGGGTTGTGTGCAC
130 CGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGG-TGTAAGCAC
* * *
5026616 ATGATGTGCGATGGGTACCGATACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCT-TG
192 ATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCT-
* *
5026680 AGAACTCACACCCCCTTAAAGAGCGTTTGAGATTTTACAAGTTTGTTGTCAGTAGCCATTAAAGT
256 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA-AAGTTTGCTGTCAGTAGCCATTAAAGT
*
5026745 GTCTGAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
320 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * *
5026810 A-TGTTTTTGTGCATGGCTACAAAAATACAAGGATCATGTCTACCAAGTATGGGGCCAAAACTCC
385 ATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC
* * *
5026874 TTTCGAAAAAATTTTAAAAAATCCCGAACCCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
450 TTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* *
5026939 GAGTCGTCTTACCATGAAACTTCACGAT-AAGCCTTAAGGGACCATTATATGAATTTACAAGCCA
515 GAGTCGTCTTGCCATGAAACTTCACG-TGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCA
*
5027003 TAAAAATGGCATTGGCACT-CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
579 TAAAAATGGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGAT
*
5027067 CCACGGCTTGCGCATCCCGTCTCTCTGGACGGCGTAGTGCCCGCCTACCCGCCTGTCTACTCATT
642 CCACGGCTTGCGCATCCCGTCTCTCTGGACGGC-TAGTGCCCGCCAACCCGCCTGTCTACTCATT
*
5027132 TTGTCGATTGG
706 TAGTCGATTGG
* *
5027143 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTCCGATAGCACATG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATG
* * ** * * *
5027208 TTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCACCACC
66 ATGGGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATC
*
5027273 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGCC-GGGGGGTGTAAGCACATGA
131 GGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTAAGCACATGA
* *
5027336 TGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAAC
196 TGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAAC
* * *
5027401 TCACACCCCCTTAAAGAGCATTTGAGATTTTATAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTA
261 TCACACCCCCTTAAAGAGCATTTGAGATTTTAAAG-TTTGCTGTCAGTAGCCATTAAAGTGTCTG
*
5027466 AAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
325 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* ** * *
5027531 TTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAATTCCTTTCA
390 TTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
*
5027596 AAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
455 AAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * *
5027661 GTCTTGCCATGAAACTTCACGTGAAGGCTCAATGGATCATTATATGAATTTACAAGCCATAAAAA
520 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAA
*
5027726 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCATGGC
585 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC-CACCTACCACCCTATCGATCCACGGC
* ** * * *
5027791 TTGGGCATCCCGTCTCTCTGTTCGACTA-TGCGTCCG-CAAGCTCGTTTCATGGGT-TGACTTAG
649 TTGCGCATCCCGTCTCTCTGGACGGCTAGTGC--CCGCCAA-CCCG---CCT--GTCT-AC-T--
** *
5027853 GCATACGGAGTTC-ATT-C
702 -CAT--TTAG-TCGATTGG
* ** * * * *
5027870 CAAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGCGTTACGGCAGCA
1 C---T-TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCA
* * * *
5027935 CATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTCTTCTTCGTCGGGGCACCATCGTCGGAGCAT
62 CATGATGGGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT
* * * * *
5028000 CGTCGGAGAACCTGACCGATGGCATTGGGGTTCCAACGATCGGGGGGGCCGAGGGGGGGGTATGC
127 CATCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATC-GGGGGGCCG-GGGGGGTGTA--A
5028065 GCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
188 GCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * * *
5028130 TCAAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGGTGTCAGTAGCCATTAA
253 TCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA-AAGTTTGCTGTCAGTAGCCATTAA
*
5028195 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTGTTTAGC
317 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
*
5028260 TG-ATTTTTTTTGTGCATGCCAACAAAAATACAAGGATTATGTCTACCAAGTTTGGGGCCAAAAC
382 TGAATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAC
* * *
5028324 TCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAAAA
447 TCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* *
5028389 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGC
512 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGC
* *
5028454 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCTA
577 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGA
* * * * *** * * * *
5028519 TCCACAGCTTGCGTATCCCGTCTCTCTGGCCGGCATAGTGCCCACCCGTCCGCCCGGCCACTCGT
641 TCCACGGCTTGCGCATCCCGTCTCTCTGGACGGC-TAGTGCCCGCCAACCCGCCTGTCTACTCAT
* *
5028584 TTCGTCGGTTGG
705 TTAGTCGATTGG
* * * *
5028596 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGGCCGAGGGTTACGACAGCA
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCA
5028657 GGATCGACAT
Statistics
Matches: 1327, Mismatches: 146, Indels: 81
0.85 0.09 0.05
Matches are distributed among these distances:
715 5 0.00
716 192 0.14
717 272 0.20
719 7 0.01
720 4 0.00
721 147 0.11
722 54 0.04
723 2 0.00
724 2 0.00
725 3 0.00
726 4 0.00
727 3 0.00
728 4 0.00
729 2 0.00
730 2 0.00
731 146 0.11
733 8 0.01
735 9 0.01
736 269 0.20
737 188 0.14
738 4 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (716 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATG
ATGGGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATC
GGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTAAGCACATGA
TGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGTTTGCTGTCAGTAGCCATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
AAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAAT
GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCACCTACCACCCTATCGATCCACGGCTT
GCGCATCCCGTCTCTCTGGACGGCTAGTGCCCGCCAACCCGCCTGTCTACTCATTTAGTCGATTG
G
Found at i:5029220 original size:26 final size:26
Alignment explanation
Indices: 5029184--5029235 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
5029174 GTTGACTTAG
*
5029184 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
*
5029210 GCATAGGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
5029236 AATTGAATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:5032705 original size:872 final size:870
Alignment explanation
Indices: 5029765--5033128 Score: 4496
Period size: 872 Copynumber: 3.8 Consensus size: 870
5029755 CCGACGGATT
* * *
5029765 CGGGGGGTGTGCGCACGTGATGTCCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
1 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATC
* * *
5029830 CCTTATCAAACCTCGTGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
65 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
5029895 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTTCACTT
130 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
5029960 CGAGTTTTTAGCTGAATTTTTTGGTGCACGCCAACAAAAATAAAAGGATCACG-CGTACCAAGTT
195 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTC-TACCAAGTT
* * * * *
5030024 TGGGGCAAAAACTCCTTCTGAAAAAATTTAAAAAAATCTCAAACCGCAAAAAGTATCAAAAATCG
259 TGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCG
* * *
5030089 TAAAAAATAG-AAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGCCTTAAGGGACCATTGTAT
324 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * *
5030153 GAATTTATAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACTCACCTA
389 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTA
* **
5030218 CCACCC-ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCGTGC
454 CCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* * * * *
5030282 CCGCTCGTTTCTTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGAAT-GGAT
519 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGGAC
* * * * *
5030346 TGAGGGTTGTGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCC-GACCGATCCTCGGCTTGCAC
584 TGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCAG-CCGATCCCCGGCTTGCGC
* * ** ** * *
5030410 ATCCTGCCTCTCTGGCCGACTGATTGCCCAAACGCTCGTTTCGTGGGTTGACTTAGGCATACGAA
648 ATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
* * * *
5030475 GTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGCGGTAGCACATGAC-GGGCTCGGGCA
713 GTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGTAGCACATG-CTGGGCTCGGGCA
* *
5030539 TGTGCTGGTGCCAG-ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAT
777 TGTGCTGGTG-CAGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG-ATCGTC--AGAACCTGAC
*
5030603 CGGCGACATTGGGGTTCCGATGATCGGGGGGGC
838 CGGCGGCATTGGGGTTCCGATGATCGGGGGGGC
* *
5030636 CGGAGGGGTGAGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCTCTAT
1 CGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTAT
* *
5030701 CCCTCAGCTAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
64 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
5030766 CAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
129 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * *
5030830 TGGACTGTTCAGCTGAATTTTTTTGTGCATGCCAA-AAAAATAAAAGAATCACGTCTACCAAG-T
194 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTT
*** *
5030893 TGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCTTGAACCGGAAAAAGTTTCAAAAATCG
259 TGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCG
5030958 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
324 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
** * *
5031023 GAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTTCCTAAACCCACCTA
389 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTA
* * ** * * *
5031088 CCGCCCTATCGATCCACAGCTTGCGTATCTCGTCTCTCTGGCCGGTGTAGTACCCGCCTGTCCGC
454 CCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-C---CCGC
* * * *
5031153 CCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCATTCTAAGATCAGACCA
515 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTA
* * * * *
5031218 -GTCTGAGGGTTGCAGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTA
580 GGACTGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTG
* ** *
5031282 CGCATCCCGCCCCTCTGGCCGGCTGAGCATCCGCACGCTCGTTTCATGTGTTGACTTAGGCATAC
645 CGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
*
5031347 GGAGTTCATTCCCAGTCTAAGCACACGGAGTTTATTCCTAGTCTAAGATCGGACCGGACCGAGGG
710 GGAGTTCATTCCCAGTCT------A---AG---A-T-C--G-----GATC--A---GACCAAGGG
* * **
5031412 TTGCGATAGCAGATGCTGGGCTCGGGCATGTGCTGGTGCCA-CATTTTTCTTCACCGGGGCACCA
749 TTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CAGCATTTTTCTTCGTCGGGGCACCA
* * ** **
5031476 TCGTC---G---G--AGAACCTGACCGGTGGGATTGGGGTTTTGGCGATCGGGGGGGC
813 TCGTCGGAGATCGTCAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGC
** * * *
5031526 CGGGGGGTGTGCAAACATGATGTACGATGGGTTCTGGTACTTGGCCCTTATGTTGGCCCCTATCC
1 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCC
5031591 CTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
5031655 GTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
5031720 GAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGACCATGTCTACCAAGTTTG
196 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTG
* *
5031785 GGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
261 GGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTG
* *
5031850 AAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGA
326 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * *
5031915 ATTTACAAGCCATAAAAGTGGCATTCGCATGCAAAAATATGAAGATGTACCTAAACCCACCTACC
391 ATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
5031980 ACCCTATCGATCCACGGCTTGCACATCCCGTTTCTCTGGTCGGCATAGTGCCCGCCCGCCCGTCC
456 ACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC
* **
5032045 GCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGG-CTG
521 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGGACTG
* * * ** * *
5032109 AAGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGAAACCCAGTCGATCCCAGGCTTGCGCATC
586 AGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATC
* * *
5032174 CCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTAACATAGGCATACGGAGTT
651 CCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
* * * *
5032239 CATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGTGGCAGCACATGCTGTGCTCGAGCATGTG
716 CATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTG
* * *
5032304 CTGGTGCTGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGAATCGTCAAAGAACCTGACCGACG
781 CTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG-ATCGTC--AGAACCTGACCGGCG
* *
5032369 GCATTGGGGTTCCGATAAT-TGGGGGGC
843 GCATTGGGGTTCCGATGATCGGGGGGGC
* * *
5032396 CAGGGGGCGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAATGGACCCCTATC
1 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATC
* *
5032461 CCTCATCAAACCTCGTGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCC
65 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
5032526 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
130 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
5032591 CGAGTTTTTAGCTGAATTGTTTTT-TCCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTT
195 CGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTT
* *
5032655 TGGGGCCAAAACTCCGTT-CGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGCTTCAAAAATC
259 TGGGGCCAAAACTCC-TTCCGAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATC
* * * *
5032719 GTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGTGTCCATTGTA
323 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
5032784 TGAATTTATAAGCCATAAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCT
388 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCT
* * *
5032849 ACCACCCTATCGATCCACGGCTTGTAAATCCCGTCCCTCTGGCCGGCGTAGTGCCGCCTGCCCGC
453 ACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTG-C-CC-GCCCGC
* * * * *
5032914 CAGCCCGCTTGTTTCATCGGTTGGCTTAGGCATATGGAGTCCATTCCCAGTCTAAGAT-AGGAC-
515 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACT
* * * * * *
5032977 CGGACCGAGGGTTACGACAACAAGATCGGCAGCACGCAGAGGGGGACCCAGTCGATCCCCGGCTT
579 AGGACTGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTT
* *
5033042 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
644 GCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
5033107 CGGAGTTCATTCCCAGTCTAAG
709 CGGAGTTCATTCCCAGTCTAAG
5033129 CATACGAAGT
Statistics
Matches: 2193, Mismatches: 236, Indels: 124
0.86 0.09 0.05
Matches are distributed among these distances:
859 1 0.00
860 65 0.03
863 2 0.00
865 4 0.00
867 1 0.00
869 69 0.03
870 198 0.09
871 175 0.08
872 516 0.24
873 9 0.00
874 5 0.00
875 374 0.17
876 1 0.00
877 2 0.00
880 1 0.00
881 1 0.00
884 2 0.00
886 188 0.09
887 64 0.03
888 98 0.04
889 75 0.03
890 267 0.12
894 1 0.00
896 3 0.00
898 1 0.00
900 1 0.00
901 69 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (870 bp):
CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTG
GGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTG
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC
GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGGACTG
AGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATC
CCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTG
CTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGATCGTCAGAACCTGACCGGCGGCA
TTGGGGTTCCGATGATCGGGGGGGC
Found at i:5033139 original size:26 final size:26
Alignment explanation
Indices: 5033102--5033154 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5033092 GTTGACTTAG
*
5033102 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5033128 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5033154 G
1 G
5033155 ATCGGACCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5035672 original size:26 final size:26
Alignment explanation
Indices: 5035624--5035674 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
5035614 TAACTTAGGC
* *
5035624 ATACGGAGTTCATTCTCAGTCTAAGG
1 ATACGGAGATCATTCTCAATCTAAGG
5035650 ATACGGAGATCATTC-CGAATCTAAG
1 ATACGGAGATCATTCTC-AATCTAAG
5035675 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGATCATTCTCAATCTAAGG
Found at i:5037447 original size:26 final size:26
Alignment explanation
Indices: 5037411--5037463 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5037401 GTTGACTTAG
5037411 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5037437 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5037463 G
1 G
5037464 ATCGGATTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5038217 original size:896 final size:894
Alignment explanation
Indices: 5035019--5039096 Score: 5783
Period size: 895 Copynumber: 4.6 Consensus size: 894
5035009 TGGTACTTGG
5035019 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
1 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
5035084 AACACTTTTTTCATATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
66 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGC
* *
5035149 ATGCCATCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCAAAAAAATT
130 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* ** * *
5035214 TTCAAAAAA-CCCGAATCGTAAAAAGTTTGGAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGC
195 TT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
5035278 CATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAAATTACAAGCCATAAAAATGGCATT
259 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
5035343 GGCATGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGTA
324 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
5035408 TCCTGTCTCTCTGGCCGGAGTAGTGCCCGCCCG----CTCGTTTTGTCGGTTGGCTTAGGCATAC
389 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATAC
* * ** *
5035469 GGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGC-GACAGCAGGATCGGCAGCACG
454 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAG-CAGCAAGATCGGCAGCACG
** * * * * **
5035533 CAGAATGGGACCTGGTCGATCCCCGACTTGCGCTTCCCGCCCCTCTGGCCGGTTGAGCTA-CCGT
518 CAGAGGGGGACCCGATCGATCCCCAACTTGCGCATCCCGCCCCTCTGGCCGACTGAGC-ACCCGT
* * * * *
5035597 ACGCTTGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCTCAGTCTAAGGATACGGAGATCA
582 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * * * * *
5035662 TTCCGAATCTAAGATCAGACCGGACTGAGGGTTGTGGCCGCACATGCTGGGCTCGGGCATGTGCT
647 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
* *
5035727 GGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C---G---C-CGGAGAACCTGATCGACGGCA
712 GGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCGGAGAACCTGACCGACGGCA
* * * * * *
5035782 CTAGGGTTTCGGTGATCGGGGGGGCCG-GGTGGTGTGCGCACATGATGTGTGATGGGTGCTGGTA
777 TTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
5035846 CTTGGCCCCTATATTGGCACCCTATCCCTCATCAAACCTCGAGAACTCACACC
842 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
5035899 CCCTTAAAGAGCATTTGAGATTTTATAGGCTTGCATGCTAGTAGCCATTAAAGTGTTTGAAATGG
1 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC-TGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
5035964 GGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTATTTTGTG
65 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTG
* *
5036029 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAATT
129 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
*
5036094 TTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
194 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
5036159 CATGAAACTTCACGTGAAGGCCTTAAGGGACCATTGTATGGATTTACAAACCATAAAAATGGCAT
259 CATGAAACTTCACGTGAAGG-CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** *
5036224 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACGGCTTGCGC
323 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
5036289 ATGCCGTCTCTCTGGTCGACGTAGTGCCCACCTGCCTGCCCGCCCAATCGTTTCGTCGGTTGGCT
388 ATCCCGTCTCTCTGGCCGGCGTAGTG-----C--CC-GCCCGCCCACTCGTTTCGTCGGTTGGCT
* * * *
5036354 CAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCAAGGCTTGCGAG-AG-AAGGAT
445 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGC-AGCAGCAA-GAT
* * * * *
5036417 CGGCATCATGTAGAGGGGGACCCGGTCGATCCCCAACTTGCGCATCCCGCCCCTCTGGCCGGCTG
508 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCAACTTGCGCATCCCGCCCCTCTGGCCGACTG
* * * * * *
5036482 AGCGCTCGTACGCTCGTTTCATGGGTTGACTTAGGCATGCAGAGTTCATTCCCAGTCTAAGCGTA
573 AGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * * * *
5036547 CGAAGTTCATTCCAAGTCTAAGATCGGACCAGATCAAGGGTTTC-AGCAGCACATGTTGGGCTCG
638 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCG
* *
5036611 GGCATGTGCAGGTGCC-CTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACC
702 GGCATGTGCTGGTGCCGC-ATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCG-CGGAGAACC
* * * *
5036675 TGACCGACAGCATTGGGGTTCCGGTGATTGGGGGGGCC-AGGGGGTCTGC-CACATGATGTGCGA
765 TGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGA
5036738 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
830 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
5036803 CCCTTAAAGAGCATTTGAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
1 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
5036868 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGC
66 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGC
* * * *
5036933 ATGCAAAAAAAAACACAAGGATCACGTCTACCAAGTTTGGGGCTC-AAACTCTTTCCAAAAAAAT
130 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAAAACTCCTTCCAAAAAAAT
* * * *
5036997 TTTAAAAAATCCCAAATCAC-AAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
194 TTTAAAAAATCCCGAA-C-CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
5037061 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
257 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
5037126 TTGGCATGCAGAAATATGAAGAGGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
322 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
5037191 CATCCCGTCTCTTTGGCCGACATAGTACCCGCCCGCCCACTCGTTTCGACAGTTGGCTTAGGCAT
387 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * *
5037256 ACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAA-GGTAGCGGCAGCAGGATTGGCAGCA
452 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC-AAGGGTTGCAGCAGCAAGATCGGCAGCA
* **
5037320 CGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCG
516 CGCAGAGGGGGACCCGATCGATCCCCAACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCG
*
5037385 TACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
581 TACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
*** * *
5037450 ATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGATAGTACATGCTGGGCTCGGGCATGTGC
646 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGC
* * * * *
5037515 TGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCGGAGTATCGACGAAAAACCTGACCGACGG
711 TGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCG-CGGAGAACCTGACCGACGG
* **
5037580 CATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAT
775 CATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
5037645 TACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCAAGAACTCACACC
840 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
5037700 CCCTTAAAGAGCATTTGCGATTGTACAGGTTTGTTGCCAGTAGCCATTTAAGTGTCTGAAATGGG
1 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
5037765 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGC
66 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGC
* * * *
5037830 ATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAGATT
130 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
*
5037895 TTAAAAAATCCCGAACCAG-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
195 TTAAAAAATCCCGAACC-GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
5037959 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATT
259 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
5038024 GGCATGGAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGGATCCACGGGTTGCGCA
324 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
5038089 TCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCACTTGTTTCGTCAGTTGGCTTAAGCATAC
389 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATAC
* * ** *
5038154 AGAGTTCATTCCCAGTCTGAGATTGGACCAGACCAAGGGTTGCAGCAGCAAGATCGACAGCACGC
454 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAAGATCGGCAGCACGC
* * * *
5038219 AGAGGGGGACCCGACCTG-TCCCCAACTTGCGCATCCCGCCCCTCTGGGCGACTGAGCGCCCGCA
519 AGAGGGGGACCCGATC-GATCCCCAACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGTA
* *
5038283 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
583 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
*
5038348 TCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
648 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
* * * *
5038413 GTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATAGTCGGAGAACCTGACAGGCGACA
713 GTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCG-CGGAGAACCTGACCGACGGCA
* * * *
5038478 TTGGGGTTCTGGCGATC-GAGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCA
777 TTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
5038542 CTTGGCCCTTATATTAGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACC
842 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
5038595 CCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGA
1 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
5038660 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTCAGCTGAACTTTTTTATGC
66 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGC
*
5038725 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATT
130 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
** *
5038790 TTAAAAAAT-CCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCC
195 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
5038854 ATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTG
260 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
5038919 GCATGCAAAAATATGAAGATGTGCCT-AACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
325 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * ** * *
5038983 CCCATCTCTGTGGTCGGCGTAGTGCCCACCCGCCTGCTCGTTTCGTTGGTTGGCTTAGGCGTACG
390 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * *
5039048 GAGTTCATTCCCAGTCTAAGATCGGATCAG-CCTGAGGGTTGCGGCAGCA
455 GAGTTCATTCCCAGTCTAAGATCAGACCAGACC-AAGGGTTGCAGCAGCA
5039097 CATGCTGGGC
Statistics
Matches: 2856, Mismatches: 288, Indels: 95
0.88 0.09 0.03
Matches are distributed among these distances:
880 40 0.01
881 219 0.08
882 121 0.04
887 1 0.00
889 2 0.00
890 5 0.00
892 2 0.00
893 132 0.05
894 400 0.14
895 610 0.21
896 544 0.19
897 269 0.09
898 1 0.00
900 1 0.00
903 285 0.10
904 174 0.06
905 50 0.02
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAAGATCGGCAGCACGCAG
AGGGGGACCCGATCGATCCCCAACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGTACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
CAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG
CCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCGGAGAACCTGACCGACGGCATTGG
GGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
Found at i:5038343 original size:26 final size:26
Alignment explanation
Indices: 5038307--5038359 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5038297 GTTGACTTAG
5038307 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5038333 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5038359 G
1 G
5038360 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5039940 original size:26 final size:26
Alignment explanation
Indices: 5039910--5039962 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5039900 GTTGACTTAG
5039910 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5039936 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5039962 G
1 G
5039963 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5041331 original size:8 final size:8
Alignment explanation
Indices: 5041318--5041343 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
5041308 AGTGCGCTTC
5041318 CGCCCGCT
1 CGCCCGCT
5041326 CGCCCGCT
1 CGCCCGCT
5041334 CGCCCGCT
1 CGCCCGCT
5041342 CG
1 CG
5041344 TTTCGTTGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.00, C:0.62, G:0.27, T:0.12
Consensus pattern (8 bp):
CGCCCGCT
Found at i:5041946 original size:849 final size:840
Alignment explanation
Indices: 5040785--5043695 Score: 2732
Period size: 849 Copynumber: 3.4 Consensus size: 840
5040775 CGGTATTGGC
* *
5040785 GTTCTGACGATCGGGGCCGCCA-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
1 GTTCCGACGATCGGGGGCGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
5040849 CCCTTATATTGGCCCCCTATCCCCCATCAAACCTCGA-AACTCACA-CCCCTTGAAAGAGCATTT
66 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTG-AAGAGCATTT
* *
5040912 GAGATTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGTTTGAAATAGGGACACTTTTTTCAAAT
130 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAA-
* * * * * *
5040977 TGGTCACAAAATCTTGTACATTTTGAGTTTTAACCTGAAGTTTTTTGTGCATGCCGAAAAAAATA
193 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
* *
5041042 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTAAAAAAAATCCCGA
258 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCCAAAAAAATTT-AAAAAAATCCCGA
* * * * *
5041107 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTTGGCTTGCCACGAAACTTCACGT
322 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* *
5041172 GAAGCCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
387 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
* * * **
5041237 GAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCGCGACTTGCGCATCCCATCTCTCTGGC
452 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGC
* * * *
5041302 CGGAGTAGTGCGCTTCCGCCCGCTCGCCCGCTCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATA
517 CGGAGTAGT--G---CC-CAC-C-CGCCCGCTCGCCCGCTCATTTCGTCGGTTGGCTTAGGCAGA
* * *
5041367 CGGAGTTAATTCCC-GATCTAAGATTGAAAC-ACACCGAGGGTTGCGACAGCAGGATCCACAGCA
574 CGGAGTTAATTCCCAG-TCTAAGA-TCAAACTACACCGAGCGTTACGACAGCAGGAT---CAGCA
* * * *
5041430 TGCAGAGGGGGTC-CCGGCTGATCCCCGGCT-TG-CGTAT-CCCGCCCCTC-TGGCCTG-CTGA-
634 TG--G-GGAGCTCGCC-CCT-ATCCCCAGCTATGCCGTATGCCCG--CCTCGTGGCCTGACT-AC
* ** * ** * * *
5041488 GCGCCTGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAAGATCGG
691 G-GCAT--ACG-GAG-TTCATTCCTAGAC-TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* *
5041553 A-TCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTT
750 ACT-GGACCGAGGGTTGCGGCAGCACATGCTAGGCTCAGGCATGAGCTGGTGCCGCATTTTTCTT
5041617 CA-C-A-A-G-G-G-C-A-T-T-G-GG
814 CATCGACACGAGTGCCAACTGTCGAGG
* * *
5041632 GTTCCGGCGATCGGGGGTGCCAGGGCGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTG
1 GTTCCGACGATCGGGGGCGCCAGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
5041697 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAAGAGCATTT
65 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAAGAGCATTT
*
5041762 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGCGGATACTTTTTTCAAAT
130 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG-GGACACTTTTTTCAAAT
*
5041827 GGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA-
194 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
* *
5041891 AAGGGATCACGTCTACCAAGTTTGGGGCCAAAAAC-CCTTCCAAAAAAAATTAAAAAAATCCCAA
259 AA-GGATCACGTCTACCAAGTTTGGGGCC-AAAACGCCTTCCAAAAAAATTTAAAAAAATCCCGA
5041955 ACCGTAAAAAGTTTCAAAAATCGTGAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
322 ACCGTAAAAAGTTTCAAAAATCGTG-AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
5042020 TGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
386 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* *
5042085 TGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCACATCCCGCCTCTCTGG
451 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
* * * *
5042150 CTGGCGTAGTGCCCACCCGCCCGCTCGCCTGTTCATTTCGTCGGTTGGCTTAGGCAGACGGAGTT
516 CCGGAGTAGTGCCCACCCGCCCGCTCGCCCGCTCATTTCGTCGGTTGGCTTAGGCAGACGGAGTT
* * ** * * * * * * *
5042215 CATTCCCAGTCTAAGATCAGACTGGACTGAGCGTTATGGCAGCAGGATCGGCTTGGGTATCTCGC
581 AATTCCCAGTCTAAGATCAAACTACACCGAGCGTTACGACAGCAGGATCAGCATGGGGAGCTCGC
* ** * ** **
5042280 CCCTCTGGCCAGCTAAGTGCCCGTATGCTCGTTTCGTGGGTTGACTACGGCATACGGAGTTCATT
646 CCCTATCCCCAGCT-A-TG-CCGTATGCCCGCCTCGTGGCCTGACTACGGCATACGGAGTTCATT
* *
5042345 CCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGCAGC
708 CCTAGACTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGC
* * *
5042410 ACATGCTGGGTTCGGGCATGAGCTGGTGCCGCATTTTTCTTCATCGGGGTACCATCGCCGGAGCA
773 ACATGCTAGGCTCAGGCATGAGCTGGTGCCGCATTTTTCTTCATC---G-A-CA----C-GAG--
5042475 TTGCCGGAAAACCTGTCCGGCGGCATTAGG
826 -TGCC----AA-CTGT----C-G----AGG
* * *
5042505 GTTCCGACGATCGGGGGGGCCGGGGGGAGGTGTGCGCACATGATGTGCGATGGATGCTGGTACTT
1 GTTCCGACGATCGGGGGCGCC-AGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
5042570 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAAGAGCATT
64 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAAGAGCATT
5042635 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
129 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAA
* * *
5042700 TGGTCACAAAATCTTGGACACTTCAAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATA
193 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
* *
5042765 CAAGGATCACGTCTACCAAGTTTTGGGCCAAAACGCCTTCCAAAAAAATTTTAAAAAAATCCTGA
258 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCCAAAAAAA-TTTAAAAAAATCCCG-
* *
5042830 AACC-TAAAAAGTTTTAAAAGTCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
321 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * * * *
5042894 TGAAGGCTTAAGGGACCACTGTATGAATTTATAAG-CACAAAAATGGCATTGGCACGCAGCAATA
386 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
*
5042958 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGCCTCTCTGG
451 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
* * ** * * * ** * * * *
5043023 -CTGACATAGTGCCCGTCCGCCCG-TCCGCCTGCTCGTTTCATCATTTGGCTTAGTCATACAGAA
516 CCGGA-GTAGTGCCCACCCGCCCGCT-CGCCCGCTCATTTCGTCGGTTGGCTTAGGCAGACGGAG
** * * *** * * * ** *
5043086 TTCGTTCCCAGTCTATGATCGAACCGGACCGAGGGTCATGGTAGTAGGATCGTCAGCACGTAGAG
579 TTAATTCCCAGTCTAAGATCAAACTACACCGAGCGTTACGACAGCAGGA---TCAGCA--T---G
* * *
5043151 AGGGACCCAATCGATTCCCGACTTACGCATCTCGCC-CCTCTGGCCGGTTGAGTGCCCACACGCT
636 -GGGA-GC--TCG---CCC--C-T----ATC-C-CCAGCTAT-GCC-G-T-A-TG--C-C-CGC-
* ** * * * * *
5043215 CGTTTCATGGGTTGTCTTA-GGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTTATTCC
675 C---TCGTGGCCTGAC-TACGGCATACGGAGTTCATTCCTAGACTAAGCATACGGAGTTCATTCC
* * * ** * * ***
5043279 CAGTCTAAGATTGGACCGGATCGAGGGTTATGGCAGCACATGCT-GCACTCGGGCAT-TTTTGGT
736 CAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTAG-GCTCAGGCATGAGCTGGT
* * * *
5043342 GCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCAACGGCATT
800 GCCGCATTTTTCTTCATC---G-A-CA----C-GAG--T-G-C---CAA-CTG----TC-G-A--
5043407 GGG
839 -GG
* * * *
5043410 GTTCTGACGATCGGGGGGGCC-GAGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGG
1 GTTCCGACGATCGGGGGCGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
5043474 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGATCATTTG
66 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAAGAGCATTTG
* * *
5043539 AAATTTTACAGGATTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
131 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATG
* *
5043604 GTCACAAAATCTTGTACACTTCGAGTTTTT---TG---------GTGTATGCCAACAAAAATACA
195 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* *
5043657 AGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTTCC
260 AGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCC
5043696 GAGGCAAATG
Statistics
Matches: 1758, Mismatches: 186, Indels: 197
0.82 0.09 0.09
Matches are distributed among these distances:
834 97 0.06
835 15 0.01
836 4 0.00
837 5 0.00
838 7 0.00
839 14 0.01
840 11 0.01
841 74 0.04
842 3 0.00
843 2 0.00
844 2 0.00
847 19 0.01
848 41 0.02
849 338 0.19
850 82 0.05
851 7 0.00
853 1 0.00
854 1 0.00
859 1 0.00
861 1 0.00
862 1 0.00
868 1 0.00
872 2 0.00
873 198 0.11
874 335 0.19
875 34 0.02
876 8 0.00
878 1 0.00
881 1 0.00
882 3 0.00
883 1 0.00
885 3 0.00
888 3 0.00
890 55 0.03
891 1 0.00
894 3 0.00
895 3 0.00
896 3 0.00
897 3 0.00
898 2 0.00
899 2 0.00
900 1 0.00
902 193 0.11
903 3 0.00
904 1 0.00
905 69 0.04
906 101 0.06
907 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (840 bp):
GTTCCGACGATCGGGGGCGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAAGAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGACACTTTTTTCAAATGG
TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
GGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCCAAAAAAATTTAAAAAAATCCCGAACCG
TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGA
GTAGTGCCCACCCGCCCGCTCGCCCGCTCATTTCGTCGGTTGGCTTAGGCAGACGGAGTTAATTC
CCAGTCTAAGATCAAACTACACCGAGCGTTACGACAGCAGGATCAGCATGGGGAGCTCGCCCCTA
TCCCCAGCTATGCCGTATGCCCGCCTCGTGGCCTGACTACGGCATACGGAGTTCATTCCTAGACT
AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTA
GGCTCAGGCATGAGCTGGTGCCGCATTTTTCTTCATCGACACGAGTGCCAACTGTCGAGG
Found at i:5042365 original size:26 final size:26
Alignment explanation
Indices: 5042329--5042381 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5042319 GTTGACTACG
*
5042329 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5042355 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5042381 G
1 G
5042382 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5042810 original size:874 final size:884
Alignment explanation
Indices: 5041623--5043633 Score: 2815
Period size: 874 Copynumber: 2.3 Consensus size: 884
5041613 TCTTCACAAG
* * * *
5041623 GGCATTGGGGTTCCGGCGATCGGGGGTGCCAGGGCGGGTGTGCGCACATGATGTGCGATGGGTAC
1 GGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
5041688 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGA
65 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGA
* *
5041753 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGCGGATACTT
130 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
5041818 TTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAA
195 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA
5041883 AAAAAATAAAGGGATCACGTCTACCAAGTTTGGGGCCAAAAACCCTTCCAAAAAAA-ATTAAAAA
260 AAAAAATAAAGGGATCACGTCTACCAAGTTTGGGGCCAAAAACCCTTCCAAAAAAATATTAAAAA
5041947 AATCC-CAAACCGTAAAAAGTTTCAAAAATCGTGAAAAAATAGAAAACGAGTCGTCTTGCCATGA
325 AATCCTCAAACC-TAAAAAGTTTCAAAAATCGTG-AAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
5042011 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCAT
388 AACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTCACAAG-CACAAAAATGGCATTGGCAC
*
5042076 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCACATCCCG
452 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCG
* * * * *
5042141 CCTCTCTGGCTGGCGTAGTGCCCACCCGCCCG-CTCGCCTGTTCATTTCGTCGGTTGGCTTAGGC
517 CCTCTCTGGCTGACATAGTGCCCACCCGCCCGTC-CGCCTGCTCATTTCATCAGTTGGCTTAGGC
* * * *
5042205 AGACGGAGTTCATTCCCAGTCTAAGATC-AGACTGGACTGA-G-C-GT-T-AT-G-G-C-AG-CA
581 AGACAGAATTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGTCAGTATGATCGAGACGAGACA
** * ** * *
5042259 -GG-ATCG-G-CTTGGGTATCTCGCCCCTCTGGCCAGCTAAGTGCCCGTATGCTCGTTTCGTGGG
645 GGGCATCGCGACTTACGCATCTCGCCCCTCTGGCCAGCTAAGTGCCCACACGCTCGTTTCATGGG
* *
5042320 TTGAC-TACGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
710 TTGACTTA-GGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * ***
5042384 CGGACTGGATCGAGGGTTGCGGCAGCACATGCTGGGTTCGGGCATGAGCTGGTGCCGCATTTTTC
774 CGGACCGGATCGAGGGTTACGGCAGCACATGCTGCACTCGGGCAT-AGCTGGTGCCGCATTTTTC
* * * * **
5042449 TTCATCGGGGTACCATCGCCGGAGCATTGCCGGAAAACCTGTCCGGC
838 TTCACCGGGGCACCATCGCCGGAGCATCGCCGGAAAACCTGACCAAC
* *
5042496 GGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGAGGTGTGCGCACATGATGTGCGATGGATG
1 GGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGG-GGTGTGCGCACATGATGTGCGATGGGTG
5042561 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTG
64 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTG
5042626 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
129 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
5042691 TTTTTCAAATGGTCACAAAATCTTGGACACTTCAAGTTTTTAGCTGAATTTTTTTATGCATGCCA
194 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCA
* *
5042756 AAAAAAATACAA-GGATCACGTCTACCAAGTTTTGGGCC-AAAACGCCTTCCAAAAAAATTTTAA
259 AAAAAAATA-AAGGGATCACGTCTACCAAGTTTGGGGCCAAAAAC-CCTTCCAAAAAAATATTAA
* * *
5042819 AAAAATCCTGAAACCTAAAAAGTTTTAAAAGTCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
322 AAAAATCCTCAAACCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
5042884 AAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTATAAGCACAAAAATGGCATTGGCAC
387 AAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTCACAAGCACAAAAATGGCATTGGCAC
* **
5042949 GCAGCAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCG
452 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCG
** * * *
5043014 CCTCTCTGGCTGACATAGTGCCCGTCCGCCCGTCCGCCTGCTCGTTTCATCATTTGGCTTAGTCA
517 CCTCTCTGGCTGACATAGTGCCCACCCGCCCGTCCGCCTGCTCATTTCATCAGTTGGCTTAGGCA
* * *
5043079 TACAGAATTCGTTCCCAGTCTATGATCGAACCGGACCGAGGGTCATGGTAGTAGGATCGTCAGCA
582 GACAGAATTCATTCCCAGTCTAAGATCGAACCGGACCGA-GGTCA--GTA-T--GATCG--AG-A
* * * *
5043144 CGTAGAGAGGGACCCAATCGATTCCCGACTTACGCATCTCGCCCCTCTGGCCGGTTGAGTGCCCA
638 CG-AGACAGGG---C-ATCG-----CGACTTACGCATCTCGCCCCTCTGGCCAGCTAAGTGCCCA
* *
5043209 CACGCTCGTTTCATGGGTTGTCTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTT
693 CACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * ***
5043274 ATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTATGGCAGCACATGCTGCACTCGGGCATTTTT
758 ATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCACATGCTGCACTCGGGCATAGCT
* * * *
5043339 GGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCAAC
823 GGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAAAACCTGACCAAC
* * *
5043401 GGCATTGGGGTTCTGACGATCGGGGGGGCC-GAGGGGTGTGCGCACATGATGTGCAATGGGTGCT
1 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
5043465 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
66 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAA
* * * *
5043530 GATCATTTGAAATTTTACAGGATTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
131 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
5043595 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
196 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
5043634 TGGTGTATGC
Statistics
Matches: 1006, Mismatches: 91, Indels: 53
0.87 0.08 0.05
Matches are distributed among these distances:
873 198 0.20
874 335 0.33
875 34 0.03
876 6 0.01
879 2 0.00
881 1 0.00
884 2 0.00
885 1 0.00
888 1 0.00
890 1 0.00
892 2 0.00
893 1 0.00
894 2 0.00
899 4 0.00
902 190 0.19
903 3 0.00
905 82 0.08
906 139 0.14
907 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (884 bp):
GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAA
AAAAATAAAGGGATCACGTCTACCAAGTTTGGGGCCAAAAACCCTTCCAAAAAAATATTAAAAAA
ATCCTCAAACCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCACTGTATGAATTCACAAGCACAAAAATGGCATTGGCACGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGCCTC
TCTGGCTGACATAGTGCCCACCCGCCCGTCCGCCTGCTCATTTCATCAGTTGGCTTAGGCAGACA
GAATTCATTCCCAGTCTAAGATCGAACCGGACCGAGGTCAGTATGATCGAGACGAGACAGGGCAT
CGCGACTTACGCATCTCGCCCCTCTGGCCAGCTAAGTGCCCACACGCTCGTTTCATGGGTTGACT
TAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
GATCGAGGGTTACGGCAGCACATGCTGCACTCGGGCATAGCTGGTGCCGCATTTTTCTTCACCGG
GGCACCATCGCCGGAGCATCGCCGGAAAACCTGACCAAC
Found at i:5043258 original size:27 final size:27
Alignment explanation
Indices: 5043228--5043284 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 27
5043218 TTCATGGGTT
*
5043228 GTCTTAGGCATACAGAGTTCATTCCCA
1 GTCTTAAGCATACAGAGTTCATTCCCA
* *
5043255 GTC-TAAGCATACGGAGTTTATTCCCA
1 GTCTTAAGCATACAGAGTTCATTCCCA
5043281 GTCT
1 GTCT
5043285 AAGATTGGAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (27 bp):
GTCTTAAGCATACAGAGTTCATTCCCA
Found at i:5043271 original size:26 final size:26
Alignment explanation
Indices: 5043235--5043287 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5043225 GTTGTCTTAG
5043235 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
5043261 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5043287 G
1 G
5043288 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5045189 original size:25 final size:26
Alignment explanation
Indices: 5045138--5045189 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5045128 GTTGACTTAG
*
5045138 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
*
5045164 GCATATAGAGCTCATT-CCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
5045189 G
1 G
5045190 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:5046058 original size:25 final size:26
Alignment explanation
Indices: 5046029--5046080 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
5046019 GTTGACTTAG
5046029 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5046054 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5046080 G
1 G
5046081 ATCAAACAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 16 0.62
26 10 0.38
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5048332 original size:888 final size:886
Alignment explanation
Indices: 5046495--5051360 Score: 6376
Period size: 887 Copynumber: 5.5 Consensus size: 886
5046485 CCTTCCGAGG
*
5046495 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAA
1 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
*
5046560 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATC-
66 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCT
* * * *
5046624 CTGAACCAGAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTC
131 CTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
5046689 ACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCATGA-AGA
196 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-CACAGA
* * * * *
5046753 AATATGAAGATGTGCCTAAACCCACATACCACCTTA-CTGATTCAC-AGTTTGCGCATCCCGTCC
260 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATC-GATCCACGA-CTTGCGCATCCCGTCT
* * * *
5046816 CTCTGGCCGGCGTAATGCCCGCCCACCCGCCCGAACGCTCGTTTTGTCGGTTGGCTTAGGCATGC
323 CTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CC---CGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * **
5046881 GGAGTTCATTCCCAGTCTAACATCAGACCAGACCAAGGGTTGCGACAGTAGGATCGACAGCACGT
384 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGTAGGATCGACAGCACAC
* ** *
5046946 AGAAGGGGA-CCGATCGATCCTTGGCTTGCGCATCCTAC-CCCTCTGGCCGGCTGAGCGCCCGTA
449 AGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC--CGCCCTCTGGCCGGCTGAGCGCCCGCA
* * * *
5047009 CGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAAACGGAGTTCAT
512 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
* * * * *
5047074 TCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCT-GCACATGCTGGGCTCGAGCAAGTGCT
577 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGG-TAGCACATGTTGGGCTCGGGCATGTGCT
* * * *
5047138 GGTGCCGCATTTTTCTTCACCGAGGCACCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCC
641 GGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCTGGAGAACCTGACCGACGACA-TGGGGTTCC
*
5047203 AGCGATCGGGGCGGCCGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
705 AGCGATCGGGG-GG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * *
5047268 ATATTGGCCCCCTATCCCTCATCAAACATCGAGAACTCACACCCCCTTAACGAGCATTTGAGATT
768 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * * *
5047333 TTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTCAAAAGGGGACACTTTTTT
833 TTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
5047387 CAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
1 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
5047452 AATACAAGGATCACGTCTACCAATTTTGGGACCAAAACTCCTTTCGGAAAAAATTTTAAAAAATC
66 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAAAAATTTTAAAAAATC
* * *
5047517 TC-GAACCATAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
130 TCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
5047581 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
195 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
5047646 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCT
260 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCT
* * *
5047711 CTGGCCGGCATAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTT
325 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * ** *
5047776 CGTTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCAACAGTAGGATCGATAGCACACAGAGGG
390 CATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGTAGGATCGACAGCACACAGAGGG
* * * * *
5047841 GGACCCGA-CTGATCCTCCGACTTTCGCATCCTGCCCTTCTGGCCGGCTGAGTGCTCGCACGCTC
455 GGACCCGATC-GATCC-CCGGCTTGCGCATCCCGCCC-TCTGGCCGGCTGAGCGCCCGCACGCTC
*
5047905 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAAGTTCATTCCC
517 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG-AGTTCATTCCC
* *
5047969 AGTCAAAGATCGGACCGGACCTAGGGTTGCGGTAGCACATGTTGGGCTCGGGCATGTGCTGGTGC
581 AGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGTTGGGCTCGGGCATGTGCTGGTGC
*
5048034 CGCATTTTTCTTCGCCGGGGCACCATCGCTGGAGAACCTGACCGACGACATGGGGTTCTAGCGAT
646 CGCATTTTTCTTCGCCGGGGCACCATCGCTGGAGAACCTGACCGACGACATGGGGTTCCAGCGAT
* * *
5048099 TGGGGGGCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCGGGTACTTGGCCCTTATATTGGC
711 CGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * * * *
5048164 CCCCTATCCCACATCAAACCTCTAGAACTCACACCCCCCTAAAGAGCTTTTGAGATTTTACAAGT
776 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
5048229 TTGCTGCTAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTT
841 TTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
5048275 CAAATGGTCACAAAATCTTGTACACTACGAATTTTTAGCTGAATTTTTTTTTGCATGCCAACAAA
1 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
5048340 AATACAAGGATTACGTCTACCAGGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATC-
66 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCT
* * * *
5048404 CTGAACCAGAAAATA-TTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCTTTCCATGAAACTT
131 CTGAACCACAAAA-AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
5048468 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
195 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
*
5048533 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
260 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCT
* * * **
5048598 CTGGCCGGTGTAGTGCCCGCCCGCCCGCCCACTTGTTTCGTCAATTGGCTTAGGCATACGGAGTT
325 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * * ** * *
5048663 CATTCCTAGTCTAAGATTGAACCAGGCCAAGGGTTGCAGTAACAAGATCGACAGCACGCAGAGGG
390 CATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGTAGGATCGACAGCACACAGAGGG
* * *
5048728 TGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCAGGCTAAGCGCCCGCACGCTCGT
455 GGACCCGATCGATCCCCGGCTTGCGCATCCCG-CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
*
5048793 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAAGCATACAGAGTTCATT-CCAGT
519 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGT
* ** *
5048857 CTAAGATCGGACCTGACCGAGGGTTGCGACAGCACATGCTGGGGCTCGGGCATGTGCTGGTGCCG
584 CTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATG-TTGGGCTCGGGCATGTGCTGGTGCCG
* * * * ** ** *
5048922 TATTTTTCTTCGCC-GCGCACCATCACTGGAGCATCATCGGAGAAACTGATCGGTGGTATTGAGG
648 CATTTTTCTTCGCCGGGGCACCAT--C----G---C-T-GGAGAACCTGACCGACGACA-TGGGG
* * * * ** *
5048986 TTCCAACAATAGGGGGGCCGGGGGGTGTATGCACATGATGTGTGATGGGTGCTGGTACTTGGCCC
701 TTCCAGCGATCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * ** *
5049051 TTATATTGGCCCCCTATCTCTCATCAAAGCTCAAGAACTCACACCCATTTAAAGAGCATTTAAGA
766 TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
5049116 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
831 TTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
5049172 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTATGCATGCCAACAAA
1 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * *
5049237 AATACAAGGATCACGACTACCAAGTCTGGGGCCAAAAATCCTTCCAAAAATAATTTTAAAAAATC
66 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-AATTTTAAAAAATC
** * *
5049302 T-TGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
130 TCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
5049366 CACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCACATAGA
195 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
* * * * * * *
5049431 AATATGAAGATGTGTCC-AAACGCACCGACCACGCTTTCGACCCAC-AGGTTGCGCATCCCGCCT
260 AATATGAAGATGTG-CCTAAACCCACCTACCACCCTATCGATCCACGA-CTTGCGCATCCCGTCT
* *
5049494 CTCTGGCCGGCGTAGTGCCCTCCCGCCCGCCCGCCCGCTCGCTTCGTCTGTTGGCTTAGGCATAC
323 CTCTGGCCGGCGTAGTG----CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * *
5049559 GGAGTTCATTCCCAATCTAAGATCGGACCAGATCGAGGGTTGCGGCAGTAGGATTGGCAGCACTC
384 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGTAGGATCGACAGCACAC
* * * *
5049624 AGA-GGGGACCC-AGTCGATCCCCGGCTTGTGCATCCCGCCCTCTGGCTGGCCGAGCGTCCGCAC
449 AGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * * *
5049687 GTTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATAGAGCTCATT
513 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
* ** ** * *
5049752 CCCAGTCTAAGATCAGACCGGACCGAGGGTTATGACAGCACATGCTGGGCTCAGGCATGTGCTGG
578 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGTTGGGCTCGGGCATGTGCTGG
* *
5049817 TG-CGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCGGAGAACTTGACCGACGACAA
643 TGCCGCATTTTTCTTCGCCGGGGCACCAT--C----G---C-T-GGAGAACCTGACCGACGAC-A
* * *
5049881 TAGGGTTCCAGCGATCGGGGGTCCGGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACT
696 TGGGGTTCCAGCGATCGGGGG-GCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * ** *
5049946 TGGCCCTTATATTGGCCCCCAATCCCTAATCAAATTTCAATAACTCACA-CCCCTTAAAGAGCAT
760 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
* *
5050010 GTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTT
825 TTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
5050072 CAAATGGTCGCAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
1 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
** * *
5050137 AATACAAGGATCACGTCTACCAAGTTTGATGCCAAAA-ACCTTCTGAAAAAATTTTAAAAAATC-
66 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCT
* * ** *
5050200 CCGAACTACAAAAAGTTT-TGAAATCATGAAAAATAGAAAATGAGTC-TCTTGCCATGAAACTTC
131 CTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
**
5050263 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATTCAGAA
196 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
* *
5050328 ATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCATCTCTC
261 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTC
* * *
5050393 TGGCCGACATAGT----GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAAACGGAGTTC
326 TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * *
5050454 ATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGG
391 ATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGTAGGATCGACAGCACACAGAGGGG
* * * * * *
5050519 GACCC-AACTGATCCCTGGCTTGCGCATCCCGGCCCTCTGGCTGACTGAGTGCCCGGACGCTCGT
456 GACCCGATC-GATCCCCGGCTTGCGCATCCC-GCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* * * *
5050583 TTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAAGCATACAGAGTTCAATCCCAGT
519 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGT
* * * * * *
5050648 CTAAGATCTGG-CCAGACCGGGGGTTACGGTAGCACATGTTGGGCTTGGGCATGTGCTGGTACCA
584 CTAAGATC-GGACCGGACCGAGGGTTGCGGTAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCG
* * * * * *
5050712 CATTTTTCTTTGTCGAGGCACCATCGCTGGAGCATCGCCAGAGAACCTGATCGGTGGCATTGGGG
648 CATTTTTCTTCGCCGGGGCACCATCGCTGGAG-A--ACC--TG-ACC-GA-C---GACA-TGGGG
*
5050777 TTCC-GACGAT-------CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCC
701 TTCCAG-CGATCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
5050834 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCATTAAAGAGAATTTGAG
765 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
5050899 ATTTTACAGGTTTGCTG-TCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTATT
830 ATTTTACAGGTTTGCTGCT-AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
*
5050956 GAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
1 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
** ***
5051021 AATATGAGGATCACGTCTACCAAGTTTGGGATGAAAACTCCTTCCGAAAAAATTTTAAAAAA-CT
66 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCT
* * * * *
5051085 CAGAACCGCAAAAAGTTTCAAAAATCATGAAATATAGAGAACGAGTCGTCTTGCCTTGAAACTTC
131 CTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * * *
5051150 ACATGAAGGCTCAAGGGACCATTGTATGAATTTACAAGGCATAAAAATTGCATTGGCACACAAAA
196 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
* * * * *
5051215 ATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCTCGGCTTGTGCATCCCGTCACTC
261 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTC
** * * *
5051280 TGGCCGGCGTTTTGCCCGCCCACCTGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTC
326 TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
*
5051345 ATTCCCAGTCTTAGAT
391 ATTCCCAGTCTAAGAT
5051361 TAGATGGGGC
Statistics
Matches: 3494, Mismatches: 405, Indels: 151
0.86 0.10 0.04
Matches are distributed among these distances:
880 4 0.00
881 2 0.00
882 1 0.00
883 86 0.02
884 163 0.05
885 85 0.02
886 159 0.05
887 474 0.14
888 353 0.10
889 123 0.04
890 167 0.05
891 292 0.08
892 103 0.03
893 217 0.06
894 4 0.00
895 3 0.00
896 153 0.04
897 298 0.09
898 224 0.06
899 25 0.01
900 316 0.09
901 150 0.04
902 92 0.03
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (886 bp):
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCT
CTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTC
TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGTAGGATCGACAGCACACAGAGGGG
GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCT
AAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCAT
TTTTCTTCGCCGGGGCACCATCGCTGGAGAACCTGACCGACGACATGGGGTTCCAGCGATCGGGG
GGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
Found at i:5048861 original size:25 final size:26
Alignment explanation
Indices: 5048810--5048861 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5048800 GTTGACTTAG
*
5048810 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTGCCAGTCTAA
5048836 GCATACAGAGTTCATT-CCAGTCTAA
1 GCATACAGAGTTCATTGCCAGTCTAA
5048861 G
1 G
5048862 ATCGGACCTG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTGCCAGTCTAA
Found at i:5049750 original size:26 final size:26
Alignment explanation
Indices: 5049710--5049762 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5049700 GTTGACTTAG
*
5049710 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
*
5049736 GCATATAGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
5049762 G
1 G
5049763 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:5051652 original size:716 final size:704
Alignment explanation
Indices: 5050677--5052001 Score: 1969
Period size: 716 Copynumber: 1.9 Consensus size: 704
5050667 GGGGTTACGG
* * **
5050677 TAGCACATGTTGGGCTTGGGCATGTGCTGGTACCACATTTTTCTTTGTCGAGGCACCATCGCTGG
1 TAGCACATGCTGGGCTGGGGCATGTGCTGGTACCACATTTTTCTTTACCGAGGCACCATCGCTGG
* * *
5050742 AGCATCGCCAGAGAACCTGATCGGTGGCATTGGGGTTCCGACGATCGGGGGGGTGTGCGCACATG
66 AGCATCGCCAGAGAACCTGACCGGCGGCATTGGAGTTCCGACGATCGGGGGGGTGTGCGCACATG
*
5050807 ATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
131 ATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAA
*
5050872 CTCACACCCCATTAAAGAGAATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCT
196 CTCACACCCCATTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
5050937 GAAATGGGGACACTTTATTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
261 GAAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * ** *
5051002 TTTTGTGCATGCCAACAAAAATATGAGGATCACGTCTACCAAG-TTTGGGATGAAAACTCCTTCC
326 TTTTGTGCATGCCAACAAAAATACGAAGATCACGTCTACCAAGTTTTAGG-CCAAAACTCCTTCA
* * * * *
5051066 GAAAAAATTTTAAAAAA-CTCAGAACCGCAAAAAGTTTCAAAAATCATG-AAATATAGAGAACGA
390 AAAAAAATTTTAAAAAATC-CAGAACCGCAAAAAGTTTCAAAAA--ATGAAAAAATAAAAAACAA
* * *
5051129 GTCGTCTTGCCTTGAAACTTCACATGAAGGCTCAAGGGACCATTGTATGAATTTACAAGGCATAA
452 GTCGTCTTGCCATGAAACTTCACATGAAGGCTCAAGGGACCATTGCATGAATTTACAAGCCAT-A
* * *
5051194 AAATTGCATTGGCACACAAAAATATGATGATGTGC-CTAAACCCACCTACCACCCTATCGATCC-
516 AAATGGCATTGGCACACAAAAACATGAAGATGT-CTCTAAACCCACCTACCACCCTATCGATCCA
* *
5051257 TCGGCTTGTGCATCCCGTCACTCTGGCCGGCGTTTTGCCCGCCCACCTGCCCGCTCATTTCGTCG
580 T-AGCTTGCGCATCCCGTCACTCTGGCCGGCGTTTTGCCCGCCCACCTGCCCGCTCATTTCGTCG
5051322 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTTAGATTAGATGGGGCCGAGGGTTGCAA
644 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTTAGATTAGATGGGGCCGAGGGTTGCAA
* * *
5051383 TAGCACATGCTGGGCTGGGGCATGTGCTGGTGCCACATTTTTCTTTACCGGGGCACCATCGTTGG
1 TAGCACATGCTGGGCTGGGGCATGTGCTGGTACCACATTTTTCTTTACCGAGGCACCATCGCTGG
* * *
5051448 AGCATCGTCGGAGAAGCTGACCGGCGGCATTGGAGTTCCGACGATCGGGGGGGCCGGTGGGGGTG
66 AGCATCGCCAGAGAACCTGACCGGCGGCATTGGAGTTCCGACGAT---------CGG-GGGGGTG
*
5051513 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAA
121 TGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCACCCTATCCCTCATCAA
* *
5051578 ACCTCGAGAACTCACACACCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
186 ACCTCAAGAACTCACAC-CCCATTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
5051642 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
250 TTAAAGTGTCTGAAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
5051707 TAGTTGAATTTTTTTGTGCATGCCATCAAAAATACGAAGATCATGTCTACCAAGTTTTAGGCCAA
315 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACGAAGATCACGTCTACCAAGTTTTAGGCCAA
* * *
5051772 AACTCCTTCAAAAAAAATTTTGAAAAATCCCGAACCGCAAAATGTTTCAAAAAATGTAAAAAATA
380 AACTCCTTCAAAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAAATG-AAAAAATA
* *
5051837 AAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACA
444 AAAAACAAGTCGTCTTGCCATGAAACTTCACATGAAGGCTCAAGGGACCATTGCATGAATTTACA
** * *
5051902 AGCCATAAAATGGCATTGGCATGCAGAAACATGAAGATGTCTCTAAACCCACCTAGCACCCTATC
509 AGCCATAAAATGGCATTGGCACACAAAAACATGAAGATGTCTCTAAACCCACCTACCACCCTATC
*
5051967 GATCCATAGCTTGCGCATCCCGTCTCTCTGGCCGG
574 GATCCATAGCTTGCGCATCCCGTCACTCTGGCCGG
5052002 TGTAGTACCC
Statistics
Matches: 550, Mismatches: 52, Indels: 25
0.88 0.08 0.04
Matches are distributed among these distances:
706 97 0.18
714 4 0.01
715 83 0.15
716 357 0.65
717 9 0.02
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (704 bp):
TAGCACATGCTGGGCTGGGGCATGTGCTGGTACCACATTTTTCTTTACCGAGGCACCATCGCTGG
AGCATCGCCAGAGAACCTGACCGGCGGCATTGGAGTTCCGACGATCGGGGGGGTGTGCGCACATG
ATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAA
CTCACACCCCATTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
TTTTGTGCATGCCAACAAAAATACGAAGATCACGTCTACCAAGTTTTAGGCCAAAACTCCTTCAA
AAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTCAAAAAATGAAAAAATAAAAAACAAGTCG
TCTTGCCATGAAACTTCACATGAAGGCTCAAGGGACCATTGCATGAATTTACAAGCCATAAAATG
GCATTGGCACACAAAAACATGAAGATGTCTCTAAACCCACCTACCACCCTATCGATCCATAGCTT
GCGCATCCCGTCACTCTGGCCGGCGTTTTGCCCGCCCACCTGCCCGCTCATTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTTAGATTAGATGGGGCCGAGGGTTGCAA
Found at i:5052573 original size:874 final size:878
Alignment explanation
Indices: 5051308--5052972 Score: 2415
Period size: 874 Copynumber: 1.9 Consensus size: 878
5051298 CCCACCTGCC
* * * * ** *
5051308 CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTTAGATTAGATGGGGCCG
1 CGCTCATTTCGTCGGTAGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
**
5051373 AGGGTTGCAATAGCACATGCTGGGCTGGGGCATGTGCTGGTGCCACATTTTTCTTTACCGGGGCA
66 AGGGTTGCAATAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTTACCGGGGCA
* * * * * * *
5051438 CCATCGTTGGAGCATCGTCGGAGAAGCTGACCGGCGGCATTGGAGTTCCGACGATCGGGGGGGCC
131 CCATCATCGGAGCATCATCGAAGAACCTGACCGACGGCATTGGAGTTCCGACGATCGGGGGAGCC
* *
5051503 GGTGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTAT
196 GGTGGGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCACCCTAT
*
5051568 CCCTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
261 CCCGCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
5051633 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
326 CAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACT
* * * * *
5051698 TCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCATCAAAA-ATAC-GAAGATCATGTCTACCAAG
391 TCGAGTTTTTAGCTAAATTTTTTGGTGCATGCCA-AAAAATATACAG-AGATCACGTCTACCAA-
* * * * * *
5051761 TTTTAGGCCAAAACTCCTTCAAAAAAAATTTTGAAAAATCCCGAACCGCAAAATG-TTTCAAAA-
453 TTTGAGGCCAAAACTCCTTCAAAAAAAATTCTAAAAAATCCCAAACCACAAAAAGTTTTCAAAAT
5051824 AATGTAAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
518 AATG--AAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
5051889 GCATGAATTTACAAGCCAT-AAAATGGCATTGGCATGCAGAAACATGAAGATGT-CTCTAAACCC
581 GCATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAACATGAAGATGTGC-CTAAACCC
* * * *
5051952 ACCTAGCACCCTATCGATCCATAGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTACCCGCCCG
645 ACCTACCACCCTATCGATCCACAGCTTGCGCATCCAGTCTCTCTGGCCGGCGTAGTACCCGCCCG
* * ** * * * *
5052017 CCCGCCCGCTCTTTCATTCCACCGGTTGGCTTAGGCATAGGGGGTTGATGCCCAGTCTAAGATCA
710 CCAGCCCGCCCGCTCATTCCACCGATTGGCTTAGGCATACGGAGTTCATGCCCAGTCTAAGATCA
5052082 GACCAGA-CTGAGGGTTGTGGCAGTAGGATCGGTAGCACGTAGAAGAGGACCCGGCTGATCCTCG
775 GACCAGATC-GAGGGTTGTGGCAGTAGGATCGGTAGCACGTAGAAGAGGACCCGGCTGATCCTCG
5052146 GCTTGCGCATCCCACCCTTCTGGCTGGCTGAGCACCCGCA
839 GCTTGCGCATCCCACCCTTCTGGCTGGCTGAGCACCCGCA
* * *
5052186 CGCTCATTTTGTGGGTAGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCGGACTG
1 CGCTCATTTCGTCGGTAGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
** *
5052250 AGGGTTGCGGCT-GCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCA-TTTTCTTT-CGTCGGG
66 AGGGTTGC-AATAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTTAC--CGGG
* *
5052312 GTACCATCATCGGAGCATCATTGAAGAACCTGACCGACGGCATTAGG-GTTCCGACGATCGGGGG
128 GCACCATCATCGGAGCATCATCGAAGAACCTGACCGACGGCATT-GGAGTTCCGACGATCGGGGG
*
5052376 AGCC-G-GGGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCC
192 AGCCGGTGGGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCACC
*
5052439 CTATCCCGCATCAAACCTCGAGAACTCACAC-CTCTTAAAGAGCATTTGAGATTTTACAGGTTTG
257 CTATCCCGCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
5052503 CTGCCAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGCTCACTAAATCTTGTA
322 CTGCCAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTA
* *
5052568 CACTTCGAGTTTTTAGCTAAATTTTTTGGTGCATTCCAAAAAATATACAGGGATCACGTCTACCA
387 CACTTCGAGTTTTTAGCTAAATTTTTTGGTGCATGCCAAAAAATATACAGAGATCACGTCTACCA
* ** * *
5052633 ATTTGGGGCCAAAACTCCTTCCGAAAAAATTCTAAAAAATCCCAAACCATAAAAAGTTTTGAAAA
452 ATTTGAGGCCAAAACTCCTTCAAAAAAAATTCTAAAAAATCCCAAACCACAAAAAGTTTTCAAAA
* * **
5052698 TCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
517 TAATGAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
5052763 TATGAATTTGCAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
582 CATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAACATGAAGATGTGCCTAAACCCAC
* * *
5052828 CTACCACCCTATCGATCCACGGCTTGCGCATCCAGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCC
647 CTACCACCCTATCGATCCACAGCTTGCGCATCCAGTCTCTCTGGCCGGCGTAGTACCCGCCCGCC
* * ** *
5052893 AGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
712 AGCCCGCCCGCTCATTCCACCGATTGGCTTAGGCATACGGAGTTCATGCCCAGTCTAAGATCAGA
*
5052958 CCGGATCGAGGGTTG
777 CCAGATCGAGGGTTG
5052973 CGACAGCACA
Statistics
Matches: 697, Mismatches: 79, Indels: 26
0.87 0.10 0.03
Matches are distributed among these distances:
873 122 0.18
874 317 0.45
875 92 0.13
876 9 0.01
877 105 0.15
878 52 0.07
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (878 bp):
CGCTCATTTCGTCGGTAGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
AGGGTTGCAATAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTTACCGGGGCA
CCATCATCGGAGCATCATCGAAGAACCTGACCGACGGCATTGGAGTTCCGACGATCGGGGGAGCC
GGTGGGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCACCCTAT
CCCGCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTAAATTTTTTGGTGCATGCCAAAAAATATACAGAGATCACGTCTACCAATTT
GAGGCCAAAACTCCTTCAAAAAAAATTCTAAAAAATCCCAAACCACAAAAAGTTTTCAAAATAAT
GAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATG
AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAACATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACAGCTTGCGCATCCAGTCTCTCTGGCCGGCGTAGTACCCGCCCGCCAGCC
CGCCCGCTCATTCCACCGATTGGCTTAGGCATACGGAGTTCATGCCCAGTCTAAGATCAGACCAG
ATCGAGGGTTGTGGCAGTAGGATCGGTAGCACGTAGAAGAGGACCCGGCTGATCCTCGGCTTGCG
CATCCCACCCTTCTGGCTGGCTGAGCACCCGCA
Found at i:5053627 original size:719 final size:714
Alignment explanation
Indices: 5052205--5053699 Score: 2187
Period size: 719 Copynumber: 2.1 Consensus size: 714
5052195 TGTGGGTAGA
* *
5052205 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAACCGGACTGAGGGTTGCGGCTGCACATGC
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAACCGGAC-GAGGGTTGCGACAGCACATGC
* * * **
5052270 TGGGCTCAGGCATGTGCTGGTGCCGCATTTTCTTTCGTCGGGGTACCATCATCGGAGCATCATTG
65 TGGGCTCAGGCATATGCTGGTGCCGCATTTTCTTTCGTCGGGGCACCATCACCGGAGCATCACCG
5052335 AAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGAGCCGGGGGCTGTGCGCACATGAT
130 AAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGAGCCGGGGGCTGTGCGCACATGAT
5052400 GTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCGCATCAAACCTCGAGAACT
195 GTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCGCATCAAACCTCGAGAACT
*
5052465 CACACCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAA
260 CACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAA
* *
5052530 ATGGGGACACTTTTTTCAAATGCTCACTAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTT
325 ATGGGGACACTTTTTTAAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTT
** * ** *
5052595 GGTGCATTCCAAAAAATATACAGGGATCACGTCTACCAATTTGGGGCCAAAACTCCTTCCGAAAA
390 GGTGCACGCCAAAAAAAATACAGGGATCACGTCTACCAATTTGGGGCCAAAAAACCTTCCAAAAA
** * *
5052660 AATTCTAAAAAATCCCAAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCT
455 AATTCTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
* * * * * * *
5052725 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTCAAGGCTTAAGAGACAATTCTATGAATTTACAAGACATAAAAATGAC
5052790 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** *
5052855 GCATCCAGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCAGCCCGCCCGCTCGTTTCGTC-GATTG
650 GCATCCAGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCAGCCCACCCGCTCGTTTCGTCAG-TTG
5052919 G
714 G
5052920 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCACATG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCGGA-CGAGGGTTGCGACAGCACATG
* *
5052985 CTGGGCTC-GGCCATATGCTGGTGTCGCATTTTTCTTT-GTCGGGGCACCATCACCGGAGCATCG
64 CTGGGCTCAGG-CATATGCTGGTGCCGCA-TTTTCTTTCGTCGGGGCACCATCACCGGAGCATCA
* ** ** * *
5053048 CCGGAGAACCTGATTGGTGGCATT-GGCGTTCCGACGATCGGGGGGGCCGGGAGGGGTGTGCGCA
127 CCGAAGAACCTGACCGACGGCATTAGG-GTTCCGACGATCGGGGGAGCC-GG-GGGCTGTGCGCA
* *
5053112 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
189 CATGATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCGCATCAAACCTCG
*
5053177 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-CCAGTAGCCATTAAAGT
254 AGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGT
* *
5053241 GTCTGAAATGGGGACACTTTTTTAAAATGGC-CACAAAATCTTGTACACTTCGAGTTTTTAGCTG
318 GTCTAAAATGGGGACACTTTTTTAAAAT-GCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTA
* * *
5053305 AATTTTTTTGTGCACGCCAAAAAAAATACTA-GGATCACGTTTACGAAGTTTGGGGCCAAAAAAC
382 AATTTTTTGGTGCACGCCAAAAAAAATAC-AGGGATCACGTCTACCAA-TTTGGGGCCAAAAAAC
* *** *
5053369 CTTCCAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
445 CTTCCAAAAAAATTCTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* * * *
5053434 CGAGTCATCTTGGCGTGAAATTTCGCGTCAAGGCTTAAGAGACAATTCTATGAATTTACAAGACA
510 CGAGTCATCTTGCCATGAAACTTCACGTCAAGGCTTAAGAGACAATTCTATGAATTTACAAGACA
* * *
5053499 TAAAAATGACATTGGCATGCAGATATTTGAAGATGTGCCTAATCCCACCTACCACCCTATCGATC
575 TAAAAATGACATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * *
5053564 CACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTCGTGCCCGCCCACCCGCCCACCTGCTCGTTT
640 CACGGCTTGCGCATCCAGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCAGCCCACCCGCTCGTTT
5053629 CGTCAGTTGG
705 CGTCAGTTGG
* * *
5053639 CTTAGGCATA-GTGAGTTCATTCCCAGTCTAAGAATGAACCAGACCGAGGGTTGCGATAGCA
1 CTTAGGCATACG-GAGTTCATTCCCAGTCTAAG-ATCAACCGGA-CGAGGGTTGCGACAGCA
5053700 GGATCGGTAG
Statistics
Matches: 698, Mismatches: 68, Indels: 24
0.88 0.09 0.03
Matches are distributed among these distances:
715 40 0.06
716 107 0.15
717 11 0.02
718 197 0.28
719 339 0.49
720 4 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (714 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAACCGGACGAGGGTTGCGACAGCACATGCT
GGGCTCAGGCATATGCTGGTGCCGCATTTTCTTTCGTCGGGGCACCATCACCGGAGCATCACCGA
AGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGAGCCGGGGGCTGTGCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCGCATCAAACCTCGAGAACTC
ACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAA
TGGGGACACTTTTTTAAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTG
GTGCACGCCAAAAAAAATACAGGGATCACGTCTACCAATTTGGGGCCAAAAAACCTTCCAAAAAA
ATTCTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
GCCATGAAACTTCACGTCAAGGCTTAAGAGACAATTCTATGAATTTACAAGACATAAAAATGACA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCAGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCAGCCCACCCGCTCGTTTCGTCAGTTGG
Found at i:5054228 original size:865 final size:865
Alignment explanation
Indices: 5052901--5054532 Score: 2393
Period size: 865 Copynumber: 1.9 Consensus size: 865
5052891 CCAGCCCGCC
* *
5052901 CGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCG
1 CGCTCGTTTCGTCGATTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCG
* * * * *
5052966 AGGGTTGCGACAGCACATGCTGGGCTCGGCCATATGCTGGTGTCGCATTTTTCTTTGTCGGGGCA
66 AGGGTTACGACAACACATGCTGGGCTCGGCCATATGCTGGTGTCACATTTTTCTTCGTCGAGGCA
** *
5053031 CCATCACCGGAGCATCGCCGGAGAACCTGATTGGTGGCATTGGCGTTCCGACGATCGGGGGGGCC
131 CCAT---C----CA-C-CCGGAGAACCTGACCGGCGGCATTGGCGTTCCGACGATCGGGGGGGCC
* * **
5053096 GGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
187 GAGAGGGGTGTGCACACATGATGTGCGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTAT
* * *
5053161 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTCC
252 CCCTCATCAAACCTCCAGAACTCACACCCACTTAAAGAGCATTTGAAATTTTACAGGTTTGCTCC
*
5053226 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTAAAATGGCCACAAAATCTTGTACACTT
317 AGTAGCCATTAAAGTGTCTGAAAAGGGGACACTTTTTTAAAATGGCCACAAAATCTTGTACACTT
* * * * *
5053291 CGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAAAAAAAATACTAGGATCACGTTTACGAAGTTT
382 CGACTTTTTAGCTGAATTGTTTTGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* **
5053356 GGGGCCAAAAAACCTTCCAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCAT
447 AGGGCCAAAAAACCTTCCAAAAAAATTTTAAAAAATCTTGAACCACAAAAAGTTTCAAAAATCAT
* * * * *
5053421 GAAAAATAGAAAACGAGTCATCTTGGCGTGAAATTTCGCGTCAAGGCTTAAGAGACAATTCTATG
512 AAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTCAAGGCTTAAGAGACAATTCTATG
* ** *
5053486 AATTTACAAGACATAAAAATGACATTGGCATGCAGATATTTGAAGATGTGCCTAATCCCACCTAC
577 AATTTACAAGACATAAAAATGACATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTAC
* *
5053551 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC-TGGCTGGCGTCGTGCCCGCCCACCCGC
642 CACCCTATCGATCCACAGCTTACGCATCCCGTCTCTCTTGGC-GGCGTCGTGCCCGCCCACCCG-
*
5053615 CCACCTGCTCGTTTCGTC-AGTTGGCTTAGGCATA-GTGAGTTCATTCCCAGTCTAAGAATGAAC
705 -C-CCT-CTCGTTTCGTCGA-TTGGCTTAGGCATACG-GAGTTCATTCCCAATCTAAGAATGAAC
5053678 CAGACCGAGGGTTGCGATAGCAGGATCGGTAGCACGTAGAAGGGGACTCGACGGATCCCCGACTT
765 CAGACCGAGGGTTGCGATAGCAGGATCGGTAGCACGTAGAAGGGGACTCGACGGATCCCCGACTT
5053743 GCGCATCCCGCCCTTCTGGCCGGCTGAGCGCCTGCA
830 GCGCATCCCGCCCTTCTGGCCGGCTGAGCGCCTGCA
* *
5053779 CGCTTGTTTCGT-GAGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCGGATC
1 CGCTCGTTTCGTCGA-TTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATC
* * * *
5053843 GAGGGTTACGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGTCACTTTTTTCTTCGTCGAGGC
65 GAGGGTTACGACAACACATGCTGGGCTCGGCCATATGCTGGTGTCACATTTTTCTTCGTCGAGGC
*
5053908 ACCAT-CA-CCGGAGAACCTGACCGGCGGCATTAGG-GTTCCGGCGATCGGGGGGGCC-AG-GGG
130 ACCATCCACCCGGAGAACCTGACCGGCGGCATT-GGCGTTCCGACGATCGGGGGGGCCGAGAGGG
5053968 GTGTGCACACATGATGTGCGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
194 GTGTGCACACATGATGTGCGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
5054033 CAAACCTCCAGAACTCACACCCACTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGC
259 CAAACCTCCAGAACTCACACCCACTTAAAGAGCATTTGAAATTTTACAGGTTTGCT-CCAGTAGC
* * * *
5054098 CATTAAAGTGTCTGAAAAGGGGACTCTTTTTTCAAATGGTCACAAAAT-TTGTACACTTGGACTT
323 CATTAAAGTGTCTGAAAAGGGGACACTTTTTTAAAATGGCCACAAAATCTTGTACACTTCGACTT
* *
5054162 TTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCC
388 TTTAGCTGAATTGTTTTGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCC
** ** * ** *
5054227 AAAACGCCTTCTGAAAAAATTTTAAAAAATCTTGAACCACAAAATGTTTTGAAAATCGTAAAAAA
453 AAAAAACCTTCCAAAAAAATTTTAAAAAATCTTGAACCACAAAAAGTTTCAAAAATCATAAAAAA
* * * *
5054292 TAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
518 TAGAAAACGAGTCATCTTGCCATGAAACTTCACGTCAAGGCTTAAGAGACAATTCTATGAATTTA
* * * *
5054357 GAAGCCATAAAAATGGCATTGGCATGCAGAAATAAGAATATGTGCCTAAACCCACCTACCACCCT
583 CAAGACATAAAAATGACATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCT
* * *
5054422 ATCGATCCACAGCTTACGCATCCTGTCTCTCTTGGCGGCGTTGTGCCCGCCCACCTGCCCTCTCG
648 ATCGATCCACAGCTTACGCATCCCGTCTCTCTTGGCGGCGTCGTGCCCGCCCACCCGCCCTCTCG
5054487 TTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGA
713 TTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGA
5054533 TCAGACCGGA
Statistics
Matches: 678, Mismatches: 70, Indels: 29
0.87 0.09 0.04
Matches are distributed among these distances:
861 45 0.07
862 5 0.01
863 1 0.00
865 405 0.60
866 57 0.08
867 41 0.06
868 2 0.00
870 2 0.00
877 2 0.00
878 118 0.17
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (865 bp):
CGCTCGTTTCGTCGATTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCG
AGGGTTACGACAACACATGCTGGGCTCGGCCATATGCTGGTGTCACATTTTTCTTCGTCGAGGCA
CCATCCACCCGGAGAACCTGACCGGCGGCATTGGCGTTCCGACGATCGGGGGGGCCGAGAGGGGT
GTGCACACATGATGTGCGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCCAGAACTCACACCCACTTAAAGAGCATTTGAAATTTTACAGGTTTGCTCCAGTAGCCAT
TAAAGTGTCTGAAAAGGGGACACTTTTTTAAAATGGCCACAAAATCTTGTACACTTCGACTTTTT
AGCTGAATTGTTTTGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAA
AAACCTTCCAAAAAAATTTTAAAAAATCTTGAACCACAAAAAGTTTCAAAAATCATAAAAAATAG
AAAACGAGTCATCTTGCCATGAAACTTCACGTCAAGGCTTAAGAGACAATTCTATGAATTTACAA
GACATAAAAATGACATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATC
GATCCACAGCTTACGCATCCCGTCTCTCTTGGCGGCGTCGTGCCCGCCCACCCGCCCTCTCGTTT
CGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGAATGAACCAGACCGAGGGTTGCG
ATAGCAGGATCGGTAGCACGTAGAAGGGGACTCGACGGATCCCCGACTTGCGCATCCCGCCCTTC
TGGCCGGCTGAGCGCCTGCA
Found at i:5055157 original size:713 final size:702
Alignment explanation
Indices: 5053784--5055271 Score: 2072
Period size: 713 Copynumber: 2.1 Consensus size: 702
5053774 CTGCACGCTT
* * *
5053784 GTTTCGTGAGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCGGATCGAGGGT
1 GTTTCGTGA-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGT
* * *
5053849 TACGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGTCACTTTTTTCTTCGTCGAGGCACCATC
65 TACGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATC
* *
5053914 ACCGGAGAACCTGACCGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCAGGGGGTGTGCACACA
130 ACCGGAGAACCTGACCGGCAGCATTAGGGTTCCGGCGATCGGGGGGGCCAGGGAGTGTGCACACA
* * * * *
5053979 TGATGTGCGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAG
195 AGATGTGCAATGGGTGCTCATACTTGCCCCTTATATCGGCCCCCTATCCCTAATCAAACCTCCAG
5054044 AACTCACACCCACTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
260 AACTCACACCCACTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * **
5054109 CTGAAAAGGGGACTCTTTTTTCAAATGGTCACAAAATTTGTACACTTGGACTTTTTAGCTGAATT
325 CTGAAAAGGGGACACTTTTTTCAAATGGTCACAAAATTTGCACACTCCGACTTTTTAGCTGAATT
*
5054174 GTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACGCCTTCT
390 GTTTTGTGCAGGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACGCCTTCT
* * *
5054239 GAAAAAATTTTAAAAAATCTTGAACCACAAAATGTTTTGAAAATCGTAAAAAATAGAAAACGAGT
455 GAAAAAATTTTAAAAAATCCTGAACCACAAAATGTTTTAAAAATCATAAAAAATAGAAAACGAGT
* *
5054304 CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAA
520 CATCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* ** *
5054369 ATGGCATTGGCATGCAGAAATAAGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACAG
585 ATGGCATTGGAACACAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAG
** * * * *
5054434 CTTACGCATCCTGTCTCTCTTGG-CGGCGTTGTGCCCGC-CCACCT-GCCCTCTC
650 CTTACGCATCCCATCTCTC-TGGCCGACATAGTGCCCGCGCC-CCTCGCCCACTC
*
5054486 GTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGT
1 GTTTCGT-GATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGT
** ** *
5054551 TGTGGCAGTACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCGTCATC
65 TACGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGA-G-G-CA--
* * * *
5054616 GTCGGAGCATCACCGGAGAACCTGACCTGCAGCGTTGGGGTTCCGGCGATC-TGGGGGCCGGAGG
125 --C----CATCACCGGAGAACCTGACCGGCAGCATTAGGGTTCCGGCGATCGGGGGGGCC--AGG
* **
5054680 GAGTGTGCGCACAAGATGTGCAATGGGTGCTGGTACTTGCCCCTTATATCGGCCCCCTATCCCTA
182 GAGTGTGCACACAAGATGTGCAATGGGTGCTCATACTTGCCCCTTATATCGGCCCCCTATCCCTA
* * * * *
5054745 ATTAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTG
247 ATCAAACCTCCAGAACTCACACCCACTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTA
* * *
5054810 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGCACACTCCGAG
312 GCCATTAAAGTGTCTGAAAAGGGGACACTTTTTTCAAATGGTCACAAAAT-TTGCACACTCCGAC
** * *
5054875 TTTTTAGCTGTTTTTTTTTGTGCAGGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
376 TTTTTAGCTGAATTGTTTTGTGCAGGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGG
* * *
5054940 CCAAAACTCCTTCTG-AAAAATTTTAAAAAATCCTGAACCATAAAAT-TTTTAAAAATCATGAAA
441 CCAAAACGCCTTCTGAAAAAATTTTAAAAAATCCTGAACCACAAAATGTTTTAAAAATCATAAAA
*
5055003 AATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
506 AATAGAAAACGAGTCATCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
5055068 TACAAGCCATAAAAATGGCATTGGAACACAGAAGTATGAAGATGTGCCTAAACCCACCTACCACC
571 TACAAGCCATAAAAATGGCATTGGAACACAGAAATAAGAAGATGTGCCTAAACCCACCTACCACC
* * *
5055133 CTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACATAGTGCCCGCGAGCCCGTGCGCC
636 CTATCGATCCACAGCTTACGCATCCCATCTCTCTGGCCGACATAGTGCCCGC--GCCCCT-CGCC
*
5055198 CACTT
698 CACTC
* * * *
5055203 ATTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA-CTGAGGG
1 GTTTC-GTGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGG
5055267 TTACG
64 TTACG
5055272 CCAATAAGAT
Statistics
Matches: 688, Mismatches: 75, Indels: 31
0.87 0.09 0.04
Matches are distributed among these distances:
702 106 0.15
703 3 0.00
704 1 0.00
705 2 0.00
709 1 0.00
712 10 0.01
713 216 0.31
714 195 0.28
715 86 0.12
716 3 0.00
717 64 0.09
718 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (702 bp):
GTTTCGTGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTT
ACGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCA
CCGGAGAACCTGACCGGCAGCATTAGGGTTCCGGCGATCGGGGGGGCCAGGGAGTGTGCACACAA
GATGTGCAATGGGTGCTCATACTTGCCCCTTATATCGGCCCCCTATCCCTAATCAAACCTCCAGA
ACTCACACCCACTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAAAGGGGACACTTTTTTCAAATGGTCACAAAATTTGCACACTCCGACTTTTTAGCTGAATTG
TTTTGTGCAGGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACGCCTTCTG
AAAAAATTTTAAAAAATCCTGAACCACAAAATGTTTTAAAAATCATAAAAAATAGAAAACGAGTC
ATCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGAACACAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGC
TTACGCATCCCATCTCTCTGGCCGACATAGTGCCCGCGCCCCTCGCCCACTC
Found at i:5055418 original size:26 final size:26
Alignment explanation
Indices: 5055380--5055432 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5055370 AGTTGACTAG
5055380 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* * *
5055406 GCATACGGTGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5055432 G
1 G
5055433 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5055911 original size:26 final size:27
Alignment explanation
Indices: 5055855--5055913 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
5055845 ACTCCTTCCA
* **
5055855 AAAAAATTTTAAAAAATCTTGAACCGC
1 AAAAAATTTTAAAAAATCGTGAACAAC
* *
5055882 AAAAAGTTTT-AAAAATCGTGAACAAT
1 AAAAAATTTTAAAAAATCGTGAACAAC
5055908 AAAAAA
1 AAAAAA
5055914 CGAGTCGTCT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.58, C:0.10, G:0.08, T:0.24
Consensus pattern (27 bp):
AAAAAATTTTAAAAAATCGTGAACAAC
Found at i:5056269 original size:902 final size:895
Alignment explanation
Indices: 5054505--5058841 Score: 4963
Period size: 893 Copynumber: 4.9 Consensus size: 895
5054495 ATTGGCTTAG
* * * ** *
5054505 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGTGGCAGTACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG-CACAGCACATGCTGGG
** **
5054570 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCGTCATCGTCGGAGCATCACCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCGTC-GAGA
* * * * *
5054635 ACCTGACCTG-CAGCGTTGGGGTTCCGGCGATC-TGGGGGCCGGAGGGAGTGTGCGCACAAGATG
129 ACCTGACC-GACGGCATTGGGGTTCCGACGATCGTAGGGGCCGG-GGG-GTGTGCGCACATGATG
* * * * *
5054698 TGCAATGGGTGCTGGTACTTGCCCCTTATATCGGCCCCCTATCCCTAATTAAACCTCGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
5054763 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
5054828 ATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGCACACTCCGAGTTTTTAGCTG-TTTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* **
5054892 TTGTGCAGGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CTGA
386 TT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
* * * *
5054956 AAAATTTTAAAAAATCCTGAACCAT-AAAATTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
450 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
5055020 CTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* ** *
5055085 GCATTGGAACACAGAAGTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
580 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* ** ** * * *
5055150 GCGCATCCCATCTCTCTGGCCGACATAGTGCCCGCGAGCCCGTGCGCCCACTT-ATTTCATTGGT
645 GCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCC-GTTCGTTTCATCGGT
** * ** *
5055214 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTACGCCAATAA
709 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACG-CAGCAG
* * * * * * * * *
5055279 GATCGGTAGCATGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGACCGG
773 GATCAGCAGCACGCAGAGGGGTACCCGACCGATCCCAGACTTGCGTATCCTGCCCCTTTGGCCGG
* * * * * *
5055344 CTAAGCGCCCGCACACTCGTTTCGTGAGTTGACTAGGCATACAGAGTTCATTCCCAGTCTAA
838 CTGAGCACCTGCACGCACG-TTCGTG-GTTGACTAGG-AT-CGGAGTTCATTCCCAGTCTAA
* * * * *
5055406 GCATACGGTGTTCATTCCTAGTCTAAGATTGGACCGGACCGAGGGTTGCACTAGCACGTGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAC-AGCACATGCTGGG
* *
5055471 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGTCAGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCGTC-GAGA
* *
5055536 ACCTGACCGACGGCATTGGGGTTCCGGCAATCGTAGGGGCCGGGGGGTGTGCGCACATGATGTGC
129 ACCTGACCGACGGCATTGGGGTTCCGACGATCGTAGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
5055601 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
5055666 CCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
5055731 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGTTGAATTTTTTTTT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTT
* * * **
5055796 GCATGCCAACAAAAATGCAAGGCTCATGTCTACCAAGTTTGGGGTGAAAACTCCTTCCAAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
** * * *
5055861 TTTTAAAAAATCTTGAACCGCAAAAAGTTTTAAAAATCGTGAACAATAAAAAACGAGTCGTCTTG
454 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * *
5055926 CCATGAAATTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAACGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*** *
5055991 TGGCATGCAGAAATATGAAGGCATACCTAAACCCACC-ATCCACCCTATCGATCCACGGCTTGCG
584 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA-CCACCCTATCGATCCACGGCTTGCG
* * *
5056055 CATCCTATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACCCGTTCGTTTCGTCGGTTGGC
648 CATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCATCGGTTGGC
* * *
5056120 TTAGGTATACGGAGTTCATTCCCAGTATAAGATCAGACCAGACCGAGGGTTATGACAGCAGGATC
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACG-CAGCAGGATC
* * * * * * *
5056185 AGCAGCACACAGAGGGGTAGCTGGCCAATCCCAGACTTGCATATCCTGCCCCTTTGGTCGGCTGA
777 AGCAGCACGCAGAGGGGTACCCGACCGATCCCAGACTTGCGTATCCTGCCCCTTTGGCCGGCTGA
*
5056250 GCACCTGCACGCACGTTTCGTGGGTTGAATTAGGCATACGGAGTTCATTCCCAGTCTAA
842 GCACCTGCACGCACG-TTCGT-GGTTG-ACTAGG-AT-CGGAGTTCATTCCCAGTCTAA
* ** *
5056309 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACAGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-ACAGCACATGCTGGG
* * * * *
5056374 CTCGGGCATGTGCTGGCGCCGAATTTTTCTTCGTCGGGGTACCA---TC---GC--CG--GAGAA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCGTCGAGAA
* * * * ** ** *
5056429 CTTGATCGACAGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCATAAATGATGTGC
130 CCTGACCGACGGCATTGGGGTTCCGACGATCGTAGGGGCC-GGGGGGTGTGCGCACATGATGTGC
*
5056494 GATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
5056559 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
5056624 GTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTT
* * * ** * ***
5056689 GCATGCCAAGAAAAATACAAGGATCACATCTACCAAGTTTGGAGTGAAAAATCCTTTTGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * *
5056754 TTTTAAAAAATCTCGAACCGTAAAAAGTTTGT-AAAATCGTGAAAAATAGAAAATGAGTCATCTT
454 TTTTAAAAAATCCCGAACCGTAAAAAGTTT-TAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
5056818 GCCATGAAACTGCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAGTGGC
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-TGGC
* *
5056883 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATCCACGGCTTGC
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
5056948 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCTGCCCGCTCGCTCGTTTTATCGGTTGG
647 GCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCATCGGTTGG
* * * *
5057013 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTT--GCAGCAGCA-C
712 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGCAGCAGGATC
** * * * * ** * ** *
5057075 ATGTTGGGCTCG-GGCATGGG---CTG-GTG-TCGCA-TTTTTC-T-TCGCTGAGGCACCTTCAT
777 A-G--CAGCACGCAG-AGGGGTACCCGACCGATCCCAGACTTGCGTATC-CT---GC-CC--C-T
* * * * * * * * * *
5057131 TGGAGCATCGTCGGAGAACCTG-ACCGAAGACGTT-G-GGCTT-CCGACGATCGGGGGTTTATTC
830 TTG-GC--CGGCTGAGCACCTGCA-CG--CACGTTCGTGG-TTGACTAGGATC-GGAGTTCATTC
*
5057192 ACAGTCTAA
887 CCAGTCTAA
* * ** *
5057201 GCATAC-GA----A-----AGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-ACAGCACATGCTGGG
* * * * * * *
5057256 CTCAGGCATGTGGTGGTGCTGCATTTTTCTTCGTCGGGGTACCATCGTCGGAGCATCGACGAAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCGTCG-AGA
* * *
5057321 ACCTGATCGATGGCATTGGGGTTCCGACGATC--AGGGGTGCCGAGGGGGGTGTGCGCATATGAT
129 ACCTGACCGACGGCATTGGGGTTCCGACGATCGTA-GGG-GCC--GGGGGGTGTGCGCACATGAT
** *
5057384 GTGCGATGGGTGCTGGTACTTCCCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACA
190 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
5057448 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGA
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
5057513 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTTGCTGAAATTTT
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
5057578 TTCTGCATGCCAACAAAAGTACAAGAATCTCGTCTACCAAGTTTGGGGCCAAAACTCCTCCCAAA
385 TTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
* * * *
5057643 AAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACAAGTCGT
450 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
5057708 CTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTAAAAGCCATAAAAATA
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
5057773 TCATTGGCATGCATAAAATATGAAGATGTGGCTAAACCCACCTACCACTCTATCGATCCACGGCT
580 GCATTGGCATGCA-GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * * *
5057838 TGCACATCCTATCTTTCTGGCCGGCGTAGTGCCCGTCTGCCTGCCCGCTCC-CTCGTTTCATCGG
644 TGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGC-CCGTTCGTTTCATCGG
* ** * ** * * ** *
5057902 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTTTGATCAAACTGGGCTGAGGGTCGCGGCAGTA
708 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAC-GCAGCA
* * *
5057967 GGATCAGCAGCACGCAGTAGGGG-ACCCAACCGATCCCTGACTTGCGTAT-CT-CGCCTTCTGGC
772 GGATCAGCAGCACGCAG-AGGGGTACCCGACCGATCCCAGACTTGCGTATCCTGCCCCTT-TGGC
* * ** *
5058029 CGGCTGAG----TGCCCGCACGCTCGT--TT--C----AT-GG-G----TTGGC--T-TAG
835 CGGCTGAGCACCTGCACGCACGTTCGTGGTTGACTAGGATCGGAGTTCATTCCCAGTCTAA
* * * *
5058069 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACTGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-ACAGCACATGCTGGG
** * * * *
5058134 CTCGGGCATGTGCTGGTGTTGCATTTTTCTTC-ACTAGGGCACCATCGTCGGAGCATCATCGGAA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGA-GGCACCATCGTCGGAGCATCGTC-GAG
* * * *
5058198 AACCTGACTGGCGGCATTGGGGTTCC-A-G-T-G-A---TCGGGGGGGTGTGCGCACATGATGTG
128 AACCTGACCGACGGCATTGGGGTTCCGACGATCGTAGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
5058255 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCCAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
5058320 ACCCCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
5058385 GGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
323 GGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
5058449 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-CCTTCCGAAAA
387 TTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * *
5058513 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATTGTGAAAAATGGAAAACGAGTCGTCT
452 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
5058578 TGCCATGCAACTTCACGTGAAGGCTTAAGGGACCATTGTCTGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
5058643 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
5058708 GCATCCCGTCTCTCTGGCCCG-CGTAGTGCCCGCCCGCCTGCCCGCCCCCTCGCCCTCTCTTTTC
647 GCATCCCATCTCTCTGG-CCGACGTAGTGCCCGCCCGCCCGCCCG---CC-CG---T-TCGTTTC
* * *
5058772 GTCGGTTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGG
703 ATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAC-G
5058837 CAGCA
767 CAGCA
5058842 CTTGCTGGGC
Statistics
Matches: 2946, Mismatches: 397, Indels: 212
0.83 0.11 0.06
Matches are distributed among these distances:
867 85 0.03
868 198 0.07
869 158 0.05
870 50 0.02
871 3 0.00
873 1 0.00
875 65 0.02
876 3 0.00
877 2 0.00
878 113 0.04
879 1 0.00
882 78 0.03
883 2 0.00
884 4 0.00
885 5 0.00
886 7 0.00
887 4 0.00
888 6 0.00
889 2 0.00
890 15 0.01
891 11 0.00
892 86 0.03
893 890 0.30
894 221 0.08
895 12 0.00
896 23 0.01
897 7 0.00
898 4 0.00
899 3 0.00
900 250 0.08
901 176 0.06
902 339 0.12
903 120 0.04
904 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (895 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCACAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCGTCGAGAAC
CTGACCGACGGCATTGGGGTTCCGACGATCGTAGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
TTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCATCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGCAGCAGGATCAGCA
GCACGCAGAGGGGTACCCGACCGATCCCAGACTTGCGTATCCTGCCCCTTTGGCCGGCTGAGCAC
CTGCACGCACGTTCGTGGTTGACTAGGATCGGAGTTCATTCCCAGTCTAA
Found at i:5056319 original size:26 final size:26
Alignment explanation
Indices: 5056283--5056335 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5056273 GTTGAATTAG
*
5056283 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5056309 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5056335 G
1 G
5056336 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5057326 original size:173 final size:173
Alignment explanation
Indices: 5057037--5057358 Score: 416
Period size: 173 Copynumber: 1.9 Consensus size: 173
5057027 GTTCATTCCC
* * *
5057037 AGTCTAAGATCGGACCAGATCGAGGGTTGCAGCAGCACATGTTGGGCTCGGGCATGGGCTGGTGT
1 AGTCTAAGATCGGACCAGATCGAGGGTTGCAGCAGCACATGCTAGGCTCAGGCATGGGCTGGTGT
* * * * *
5057102 CGCATTTTTCTTCGCTGAGGCACCTTCATTGGAGCATCGTCGGAGAACCTGACCGAAGACGTTGG
66 CGCATTTTTCTTCGCTGAGGCACCATCATCGGAGCATCGACGAAGAACCTGACCGAAGACATTGG
*
5057167 GCTTCCGACGATCGGGGGTTTATTCACAGTCTAAGCATACGAA
131 GCTTCCGACGATCAGGGGTTTATTCACAGTCTAAGCATACGAA
* * * *
5057210 AGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCACATGCTAGGCTCAGGCATGTGG-TGGTG
1 AGTCTAAGATCGGACCAGATCGAGGGTTGCAGCAGCACATGCTAGGCTCAGGCATG-GGCTGGTG
* * * * * *
5057274 -CTGCATTTTTCTTCG-TCGGGGTACCATCGTCGGAGCATCGACGAAGAACCTGATCGATGGCAT
65 TC-GCATTTTTCTTCGCT-GAGGCACCATCATCGGAGCATCGACGAAGAACCTGACCGAAGACAT
*
5057337 TGGGGTTCCGACGATCAGGGGT
128 TGGGCTTCCGACGATCAGGGGT
5057359 GCCGAGGGGG
Statistics
Matches: 126, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
172 2 0.02
173 122 0.97
174 2 0.02
ACGTcount: A:0.20, C:0.22, G:0.33, T:0.25
Consensus pattern (173 bp):
AGTCTAAGATCGGACCAGATCGAGGGTTGCAGCAGCACATGCTAGGCTCAGGCATGGGCTGGTGT
CGCATTTTTCTTCGCTGAGGCACCATCATCGGAGCATCGACGAAGAACCTGACCGAAGACATTGG
GCTTCCGACGATCAGGGGTTTATTCACAGTCTAAGCATACGAA
Found at i:5059097 original size:723 final size:718
Alignment explanation
Indices: 5058058--5059483 Score: 2246
Period size: 724 Copynumber: 2.0 Consensus size: 718
5058048 TCGTTTCATG
* * * * *
5058058 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACTGAGGGTTGCGACAG
1 GGTTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAG
* ** * *
5058123 CACATGCTGGGCTCGGGCATGTGCTGGTGTTGCATTTTTCTTCACTAGGGCACCATCGTCGGAGC
66 CACATGCTGGGCTCGGGCATGGGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCGGAGC
* * * * *
5058188 ATCATCGGAAAACCTGACTGGCGGCATTGGGGTTCCAGTGATCGGGGGGGTGTGCGCACATGATG
131 ATCATCGGAAAACCTGACCGACGGCATTAGGCTTCCAGCGATCGGGGGGGTGTGCGCACATGATG
* *
5058253 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCCAGAACTC
196 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTC
* *
5058318 ACACCCCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
261 ACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
5058383 ATGGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTT
326 ATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* ** * *
5058447 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACCCTTCCGAA
390 TTGTGCATACCAACAAAAATACAAGGATCAAATCTACCAAGTTTGGGGCCAAAAAACCTTCCAAA
* ** ** *
5058511 AAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATTGTGAAAAATGGAAAACGAGTCGT
455 AAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCGAAAATCATGAAAAATAAAAAACGAGTCAT
* *
5058576 CTTGCCATGCAACTTCACGTGAAGGCTTAAGGGACCATTGTCTGAATTTACAAGCCATAAAAATG
520 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
5058641 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
585 GCATTGGCATGCAAAAATATGAAGATATGCCTAAACCCACCTACCACACTATCGATACACGGCTT
*
5058706 GCGCATCCCGTCTCTCTGGCCCGCGTAGTGCCCGCCCGCCTGCCCGCCCCCTCGCCCTCTCTTTT
650 GCGCATCCCATCTCTCTGGCCCGCGTAGTGCCCGCCCGCCTGCCCGCCCCCTCGCCCTCTCTTTT
5058771 CGTC
715 CGTC
*
5058775 GGTTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAG
1 GGTTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAG
* ** * *
5058840 CACTTGCTGGGCTCGGGCATGGGCTTTTGCCGCATTTTTCTTCACCGGGGCACCTTCGCCGGAGC
66 CACATGCTGGGCTCGGGCATGGGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCGGAGC
* * *
5058905 ATCGTCGGAGAACCTGACCGACGGCGTTAGGCTTCC-GACGATCGGGGGCCGGGGGGTGTGCGCA
131 ATCATCGGAAAACCTGACCGACGGCATTAGGCTTCCAG-CGATC----G--GGGGGGTGTGCGCA
*
5058969 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
189 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCC
* * *
5059034 AGAACTCACACCCCCTTAAACTGCATTTTAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGT
254 AGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
5059099 GTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
319 GTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* *
5059164 ATTTTTTTGTGCATACCAACAAAAATATAAGGATCAAATGTACCAAGTTTGGGGCCAAAAAACCT
384 ATTTTTTTGTGCATACCAACAAAAATACAAGGATCAAATCTACCAAGTTTGGGGCCAAAAAACCT
5059229 TCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCGAAAATCATGAAAAATAAAAAACG
449 TCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCGAAAATCATGAAAAATAAAAAACG
5059294 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
514 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
5059359 AAAATGGCATTGGCATGCAAAAATATGAAGATATGCCTAAACCCACCTACCACACTATCGATACA
579 AAAATGGCATTGGCATGCAAAAATATGAAGATATGCCTAAACCCACCTACCACACTATCGATACA
* * * * *
5059424 CGGCTTGCGCATCCTATCTTTCTGGCCGGCGTAGTGCCCGTCCGCCTGCCCGCTCCCTCG
644 CGGCTTGCGCATCCCATCTCTCTGGCCCGCGTAGTGCCCGCCCGCCTGCCCGCCCCCTCG
5059484 TTTCATCGGT
Statistics
Matches: 643, Mismatches: 57, Indels: 11
0.90 0.08 0.02
Matches are distributed among these distances:
716 1 0.00
717 147 0.23
721 1 0.00
722 49 0.08
723 202 0.31
724 243 0.38
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (718 bp):
GGTTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAG
CACATGCTGGGCTCGGGCATGGGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCGGAGC
ATCATCGGAAAACCTGACCGACGGCATTAGGCTTCCAGCGATCGGGGGGGTGTGCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTC
ACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
TGTGCATACCAACAAAAATACAAGGATCAAATCTACCAAGTTTGGGGCCAAAAAACCTTCCAAAA
AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCGAAAATCATGAAAAATAAAAAACGAGTCATC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCATGCAAAAATATGAAGATATGCCTAAACCCACCTACCACACTATCGATACACGGCTTG
CGCATCCCATCTCTCTGGCCCGCGTAGTGCCCGCCCGCCTGCCCGCCCCCTCGCCCTCTCTTTTC
GTC
Found at i:5060563 original size:26 final size:26
Alignment explanation
Indices: 5060533--5060585 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5060523 GTTGACTTAG
* *
5060533 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5060559 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5060585 G
1 G
5060586 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5060938 original size:885 final size:878
Alignment explanation
Indices: 5059661--5065687 Score: 6872
Period size: 885 Copynumber: 6.8 Consensus size: 878
5059651 GTTGGCTTAG
* * *
5059661 GCATACGGAGTTCATTCCCAGTCTAAGATTGGA-TCAGACTGAGGGTTGC-GACAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCAG-CAGCACATGCTG
** * *
5059724 GGCTCGGGCATGTGCTGGTGTTGCATTTTTCTTCACTGGGGCACCATCGTCGGAGCATCATCGAA
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA-T-GGGCACCATCGTCGGAG-AACCT-G--
*
5059789 AACCTGACTGGCGGCATTGGGGTTCCAGCGATCGGGGGGGTGTGCGCACATGATGTGTGATGGGT
123 -ACC-GA-T---GGCATTGGGGTTCCAGCGATCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
5059854 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCCAGAACTCACACCCCCTT
182 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
5059919 CAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACAC
247 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
5059984 TTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGC
312 -TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
*
5060048 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACCCTTCCGAAAAAATTTTAA
376 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAA
* * * *
5060112 AAAATCCCGAACCGTAAAAAGTTTTGAAAATTATGAAAAATGGAAAACGAGTCGTCTTGCCATGC
441 AAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
5060177 AACTTCACGTGAAGGCTTAAGGGACCATTGTCTGAATTTACAAGCCATAAAAATGGCATTGGCAT
506 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
*
5060242 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CGT
571 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCGT
* * *
5060306 CTCTCTGGCCCGCGTAGTGCCCGCCCGCCTGCCCGCCCCCTCGCCCTTTCTTTTCGTCGGTTGCC
636 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCG----CTCG--C-TT-GTTTCGTCGGTTGGC
* * * * *
5060371 TTAGGCATACGGAGTTCATTCTCAGTCTAGGATTGGACCAAACTGATGGTTACGATAGCAAGATC
693 TTAGGCATACGGAGTTCATTC-CAGTCTAAGATCGGACCAAACTGAGGGTTGCGATAGCAGGATC
* *
5060436 AGCAACACGCAGAGGGGGACCCGACGATCCCCGGCTTGCGCATCACGCCCCTCTGGCCAGCTGAG
757 AGCAGCACGCAGAGGGGGACCCGACGATCCCCGGCTTGCGCATC-CGCCCCTCTGGCCGGCTGAG
* * * * *
5060501 CGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
821 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* *
5060559 GCATACGGAGTTCATTCCCAATCTAAGATCGGACTGGATCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGG
* * * *
5060624 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCATCGG-AGCATCG-CTGGAGAACCTGACCGATG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATGGGCACCATCGTC-GGAGAACCTGACCGATG
* * *
5060687 GCATTGGGGTTCCAGGGATCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGC
130 GCATTGGGGTTCCAGCGATCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
** *
5060752 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAACTGCATTTTA
195 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
5060817 GATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGG
260 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
5060882 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAAAATATAA
325 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
** * * * * * *
5060947 GGATCAAATGTACCAAGTTTGGGGCCAAAAAACATTCCAAAAAAATTTTAAAAAATCCCAAATCG
390 GGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
* * * *
5061012 TAAAAAGTTTCGAAAATCATGAAAAATAAAAAACGGGTCATCTTGCCATGAAACTTCAGGTGAAG
455 TAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
5061077 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAG
520 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAG
* * * * * *
5061142 ATATGCCTAAACCCACCTACCACACTATCGATACACGGCTTGCGCATCCTATCTTTCTGGCCGGT
585 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC-GTCTCTCTGGCCGGC
* * * * * *
5061207 GTAGTGCCCGTCCACCTGCCCGCTCCCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTC
649 GTAGTGCCCGCCCGCCTGCCCGCTCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
** ** **** * * * ** * * *
5061272 CTAGTCTTTGATCAAACTGGGCCGAGGGTCGTGGCAGTAGGATCAACAGCACGCAGTGGGGGACC
714 C-AGTCTAAGATCGGACCAAACTGAGGGTTGCGATAGCAGGATCAGCAGCACGCAGAGGGGGACC
* * * * * * * *
5061337 CAACCGATCCCTGACTTACGTATCTCGCCCTTCTGGTCGGCTGAGTGCCCGCACGCTCGTTTCGT
778 CGA-CGATCCCCGGCTTGCGCATC-CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
* * *
5061402 AGGTTGGCTTAGGCATACGGAGTTCATTCCCAG--T--
841 GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* *
5061436 -C-TA---AG---ATT----G-----GATC--A---GACTGAGGGTTAGGA-CAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTT-GCAGCAGCACATGCTGG
** * * *
5061478 GCTCGGGCATGTGCTGGTGTTGTATTTTTCTTCACTGGGGCACCATCGTCGGAGCATCATCGAAA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA-T-GGGCACCATCGTCGGAG-AACCT-G---
* *
5061543 AACCTGACTGGCGGCATTGGGGTTCCAGCGATCGGGGGGGTGTGTGCACATGATGTGTGATGGGT
123 -ACC-GA-T---GGCATTGGGGTTCCAGCGATCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
5061608 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
182 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
5061673 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACAT
247 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
5061738 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTATTTT-TGCGTGCC
312 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
5061802 AAGAAAAATACAAGGATCACGTCTACCAAGTTCGGTGCCAAAAATCCTTCCGAAAAAATTTTAAA
377 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAA
* * * ** *
5061867 AAATCCCGAGCTGTAAAAAGTTTCAAAAATTGTCAAAAATAGAAAACGAGTCGTCTTGCCATGAA
442 AAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
5061932 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTCCAAGCCATAAAAATGGCATTGGCATG
507 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * * *
5061997 CAAAAATATGAAGATGTGCTTAAACCCACCTACCACCATATCGATCAACGGCTTCCGCATCCCGC
572 CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CCGT
* * * * * *** * *
5062062 CTCTCTGGCCGGCATAATACCCGCCTG-CTCGTCCG-T-AAAT-TTT-GTTGGTTGTCTTAGGCA
636 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCT-GCCCGCTCGCTTGTTTCGTCGGTTGGCTTAGGCA
* * *** * * * * *
5062122 GACGGAGTTCATTCCTAGTCTAAGATCAGAGTGAACCGAGGGTTGCAACAGTAGGATCGGCAGCA
700 TACGGAGTTCATTCC-AGTCTAAGATCGGACCAAACTGAGGGTTGCGATAGCAGGATCAGCAGCA
* * * *
5062187 CGTAGAGAGGGACCCGGCCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
764 CGCAGAGGGGGACCC-GACGATCCCCGGCTTGCGCATCC-GCCCCTCTGGCCGGCTGAGCGCCCG
* * * *
5062252 CACGCTCGTATCGTGAGTTGACTTAGGCATACGAAATTCATTCCCAGTCTGA
827 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * * *
5062304 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TCGAACCGAAGGTTGCGGCACCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCAGCAGCACATGCTGG
* * * * *
5062368 GCTCGGGCATTTGCTGGTGCCACATTTTTCTTCGCTGGGGGCACTATCGCCGGAACATTGTCGAA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-AT--GGG--C-A----C----CATCGTCGGA
* * * * * *
5062433 GAACTTGACCAACGGCATTGGGGTTCC-GACGATTGGGGGGCCGGGGAGGTGCGCGCAAATGATG
116 GAACCTGACCGATGGCATTGGGGTTCCAG-CGA-T-------CGGGGGGGTGTGCGCACATGATG
* * * *
5062497 TGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCTTATCACTCATCAAACCTCAAGAACTC
172 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
5062562 ACACCCCTTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAA
237 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
5062627 ATGGGGACACCTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTT
302 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
5062692 TATGCATGCCAAAAAAAATACAAGGATCGCGTCTACCACGTTTGGGGCCAAAAATCCTTCCAAAA
367 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* * * *
5062757 AAATTTTAAGAAATCCCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
432 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC
*
5062822 TTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGG
497 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
5062887 CACTGGCA--CATAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTACCGATCCACGACT
562 CATTGGCATGCA-A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * ** * * * *
5062950 TGTGCATCCCGTTTCTCTGGTTGGCGTAATGCCCGCCCGCCCGTCCACTCGCTTGTTTCGTCGGT
625 TGCGCAT-CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCTCGCTTGTTTCGTCGGT
* * * * * * * *
5063015 TGGCTTAGGCATATGAAGTTCATTCCCAGTCTAAGATTGAACCAGACAGAGGGGTGCGGTAGCAG
689 TGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCGGACCAAACTGAGGGTTGCGATAGCAG
* * * * * ** * *
5063080 GATCGGTAGCACACAGAGGGGGACTCGGCCCGATCGTCGGCTTGCGCATCCTGCCCCTCTAGCCA
753 GATCAGCAGCACGCAGAGGGGGAC-CCG-ACGATCCCCGGCTTGCGCATCC-GCCCCTCTGGCCG
* *
5063145 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAATCTAA
815 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * * *
5063209 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGG
* * * *
5063274 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGAACCTGACCGAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA--TGGGCACCATCGTCGGAGAACCTGACCGAT
*
5063339 GGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCT
129 GGCATTGGGGTTCCAGCGAT---------CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * * *
5063404 AGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAGACATTGAGAACTCACACCCCCTTAAA
185 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
5063469 GGGCATTTGAGATTTTACAGGTTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACATTT
250 GAGCATTTGAGATTTTACAGG-TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
5063534 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATCTTTTTATGCATGCCAA
314 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
5063599 CAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAATAAATTTTAAAAA
379 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAA
* ** * *
5063664 ATCTCGAACCACAAAAAGTTTTGAAAGTCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
444 ATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
5063729 TTCATGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
509 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * *
5063794 AAAAGATGAAGATGTGCCTAAACCC-CCTACCACCCTATCGATCCACAGCTTGCGCATCCCGCCT
574 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CCGTCT
* * *
5063858 CTCTGGCCGGCGTAGTGCCCGTCCGCCTGCCCGCT--C--GTTTAGTCGGTTGGCCTAGGCATAC
638 CTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCTCGCTTGTTTCGTCGGTTGGCTTAGGCATAC
** * * * ** * *
5063919 AAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCACCAGGATCAGCAGCACGT
703 GGAGTTCATT-CCAGTCTAAGATCGGACCAAACTGAGGGTTGCGATAGCAGGATCAGCAGCACGC
* **
5063984 AGAGGGGGACCCGACCGATCCTCGGCTTATGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
767 AGAGGGGGACCCGA-CGATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
*
5064049 GCTCGTTTCGTGGGTTGACTTAGGC--ACAAAGTTCATTCCCAGTC-AA
830 GCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
*
5064095 G-AT-C--AG---------A--C----A----A---GACCGAGGGTTGCAGCAGCACATGCTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGG
* ** * *
5064134 CTCGGGTATGTGCTGGTGTTGCAATTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAT--GGG------CA-C----CATCGTCGGAGA
** * * * * *
5064199 ACCTGACCGGCGGCATTAGGGTT-CTGATGATCGGGGGGCCGGGGGGTGTGCGTACATGATGTGT
118 ACCTGACCGATGGCATTGGGGTTCCAG-CGATC-----G--GGGGGGTGTGCGCACATGATGTGC
*
5064263 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
175 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
5064328 -CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGTCATTAAAGTGTCTGAAATG
240 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
5064392 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGT
305 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
5064457 GCATGCCAA-AAACAATACAAGGATCACGTCTACCAAATTTGGGGCCAAAACTCCATCCGAAAAA
370 GCATGCCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* * * * *
5064521 ATTTTAAAAAATCTCGAGCTGCAAAAAGCTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
434 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
5064586 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
499 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
5064651 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
564 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
5064716 CATCCCGTCTCTCTGGCCGGCGTAGT----GCCCG-CT---CGCCCGCTTGTTTCGTCGGTTGGC
629 CAT-CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCTCGCTTGTTTCGTCGGTTGGC
* * ***** **
5064773 TTAGGCATACGGAGTTCATTCTATTCTAAGATCGGTTTGGACTGAGGGTT-ATAGTAGCAGGATC
693 TTAGGCATACGGAGTTCATTCCAGTCTAAGATCGGACCAAACTGAGGGTTGCGA-TAGCAGGATC
* * * * * *
5064837 GGTAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCTGCTGA
757 AGCAGCACGCAGAGGGGGACCC-GACGATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGA
*
5064902 GCGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGAAGTTCATTCCCAGTCTAA
820 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* ** * * * * * *
5064961 CCATACAAAGTTCATTCCCAGTCTAAGATCGGCCAGAACCAAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGG
* * *
5065026 CTCGGGCATGTGCTGGTGCCGCATTTTTCCTCGTAGGGGCACCATCGTCGGAGAACCTGACCGGT
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC--ATGGGCACCATCGTCGGAGAACCTGACCGAT
* * * * *
5065091 GGCATTAGGGTTCCGACGATCGAGGGGGCCGGGGGGGGTTGTGCGCATATGATGTGCAATGGCTG
129 GGCATTGGGGTTCC-A-G--CGA-----TC-GGGGGGG-TGTGCGCACATGATGTGCGATGGGTG
* * * * *
5065156 CTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCAACAAACTTTGAAAACTCACACCCCCTTA
183 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
5065221 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
248 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
5065286 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATG-ATTTTTTTGTGCAAGCCA
313 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
** *
5065350 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATTATTCCGAAAAAATTTTGAAA
378 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAA
*** * * * * * *
5065415 AATTTTGAACTGTAAAAAGTATCCAAAATCGTGAAAAATAGAAAACAAGTCGTCTTACCATGAAA
443 AATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
5065480 GTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGC
508 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
5065545 AAAAATAGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTC
573 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CCGTC
* *
5065610 TCTCAGGCCGACGCT-GTGCCCG---GCC-GCCCGCT--C--GTTTCGTCGGTTGGCTTAGGCAT
637 TCTCTGGCCGGCG-TAGTGCCCGCCCGCCTGCCCGCTCGCTTGTTTCGTCGGTTGGCTTAGGCAT
5065666 ACGGAGTTCATTCCCAGTCTAA
701 ACGGAGTTCATT-CCAGTCTAA
5065688 AATAGCCACA
Statistics
Matches: 4407, Mismatches: 540, Indels: 376
0.83 0.10 0.07
Matches are distributed among these distances:
855 53 0.01
856 3 0.00
857 2 0.00
858 11 0.00
859 4 0.00
860 61 0.01
862 2 0.00
863 124 0.03
864 194 0.04
865 23 0.01
866 9 0.00
867 311 0.07
868 338 0.08
869 313 0.07
870 6 0.00
871 37 0.01
872 2 0.00
873 3 0.00
875 2 0.00
876 4 0.00
879 3 0.00
880 77 0.02
881 115 0.03
882 4 0.00
884 60 0.01
885 607 0.14
886 330 0.07
887 22 0.00
888 32 0.01
889 76 0.02
890 140 0.03
891 21 0.00
892 57 0.01
893 38 0.01
894 179 0.04
895 311 0.07
896 6 0.00
897 4 0.00
898 88 0.02
899 203 0.05
900 262 0.06
901 6 0.00
902 11 0.00
903 3 0.00
904 74 0.02
905 176 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (878 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATGGGCACCATCGTCGGAGAACCTGACCGATGG
CATTGGGGTTCCAGCGATCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
GATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
AAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCGTCTCTCTGGCCGGCGT
AGTGCCCGCCCGCCTGCCCGCTCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCA
GTCTAAGATCGGACCAAACTGAGGGTTGCGATAGCAGGATCAGCAGCACGCAGAGGGGGACCCGA
CGATCCCCGGCTTGCGCATCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:5062317 original size:26 final size:26
Alignment explanation
Indices: 5062278--5062327 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
5062268 GTTGACTTAG
5062278 GCATACGAAATTCATTCCCAGTCTGA
1 GCATACGAAATTCATTCCCAGTCTGA
* *
5062304 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGAAATTCATTCCCAGTCT
5062328 AAGATCAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTGA
Found at i:5064972 original size:26 final size:26
Alignment explanation
Indices: 5064936--5064986 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5064926 TTCACTTAGG
*
5064936 CATACGAAGTTCATTCCCAGTCTAAC
1 CATACAAAGTTCATTCCCAGTCTAAC
5064962 CATACAAAGTTCATTCCCAGTCTAA
1 CATACAAAGTTCATTCCCAGTCTAA
5064987 GATCGGCCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.29, G:0.10, T:0.27
Consensus pattern (26 bp):
CATACAAAGTTCATTCCCAGTCTAAC
Found at i:5066536 original size:25 final size:26
Alignment explanation
Indices: 5066485--5066536 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5066475 GTTGGCTTAG
*
5066485 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5066511 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5066536 G
1 G
5066537 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5068126 original size:26 final size:26
Alignment explanation
Indices: 5068090--5068142 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5068080 GTTAATTTAG
5068090 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5068116 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5068142 G
1 G
5068143 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5069010 original size:26 final size:26
Alignment explanation
Indices: 5068980--5069032 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5068970 CTTGACTTAG
*
5068980 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
*
5069006 GCATACGGAATTCATTCCTAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
5069032 G
1 G
5069033 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:5071463 original size:26 final size:26
Alignment explanation
Indices: 5071427--5071479 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5071417 GTTGACTTAG
5071427 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* * *
5071453 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5071479 G
1 G
5071480 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5072343 original size:26 final size:26
Alignment explanation
Indices: 5072314--5072366 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5072304 GTTAACTTAG
*
5072314 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5072340 GCATGCAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5072366 G
1 G
5072367 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5072888 original size:900 final size:896
Alignment explanation
Indices: 5070998--5089828 Score: 12360
Period size: 901 Copynumber: 20.7 Consensus size: 896
5070988 AAATTTTTTC
* * * *
5070998 CGAAAAAATTTTAAAAACTCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAG
1 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAG
**
5071063 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAAGACCATTGTATGAATTTACAAGCCATAAA
66 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * **
5071128 AATGGCATTGGCACGTAGAAATTTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATA
131 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * * * * *
5071193 GCTTGTGCATCTCATCTCTCTAGCTGGCGTAGCGCCCGTCCTCCAACCCACCCGCTCGTTTCATC
196 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CC-GCCCGCCCGCTCGTTTCGTC
* * * * * *
5071258 GGTTGCCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATCAGGCCGGATTGAGGGTTGTGGCAA
257 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAG
* * ** * *
5071323 CA-GATCGGCGGCACGCAGAGGGGGACCCAACCGATCCCTGGCTTGTGCATCCCGCCCCTCTGGC
322 CAGGATCAGCAGCACGCAGAGGGGGACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
*
5071387 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTA
386 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * **
5071452 AGCATATGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCAAGGGTTCCAACAGCACA---T--
451 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
5071512 GCT-GGGC---T-C-GGTGCCACATTTTTCTTCGTCGGGGTA-CATCGCCGGAGCATCACCAGAG
516 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAG
* ** * * *
5071570 AACCTGACTGGTGGCATTGGTGTTCCGGCGAGCAGGTGGGCCGTGGGGGTGTGCGCACATGATGT
581 AACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGT
* *
5071635 GCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCA
644 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* *
5071700 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCAATTAAAGTGTCTGAAA
709 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
5071765 TGAGGACACTTTTTTCAAATAGTCAC-AAATCTTGTACACTTAGAGTTTTCAGCTGAATTTTTTT
774 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
5071829 GTGCATACCAAGAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTT
839 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* *
5071887 CTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATATAAAACGA
1 C-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGA
* * *
5071952 GTCATCTTGCCATGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAA
65 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
** ** * *
5072017 AAATATCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGAACCAC
130 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * *
5072082 AGCTTGCGCATCTCGTCTCTTTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGT
195 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
** * **
5072147 TGGCTTAGGCATACTCAGTTCATTCCCAGTCGAAGATCAGACCGGACTGAGGGTTGCT-ACAGCA
260 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTG-TGGTAGCA
* * *
5072211 GGATCAGCAGCACGTAGAGGGGGACCCAGTCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCG
324 GGATCAGCAGCACGCAGAGGGGGACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
5072276 GTTGAGCGCCCGTACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
388 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * *
5072341 CATGCAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTACGGTAGCACATGCTGGGC
453 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * * * *
5072406 TTGGGCATATGCTGGGGCCACATTTTTCTTCGCCGGGCCACCATCGTCAGAGCTTCATCGGAGAA
518 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAA
* * * *
5072471 CCTAACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGTGGGGTGTGTGCACACGATGTGCG
583 CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCG
*
5072536 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTTGAGAACTCACAC
647 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
*
5072601 CCCCTTAAAGAGCATTTCGAGATTTTACAGGTTTGCTGCCAGTA-CCAATTAAAGTGTCTTAAAT
712 CCCCTTAAAGAGCATTT-GAGATTTTACAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTGAAAT
*
5072665 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
775 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
5072730 TGCATGCCAACAAAAATACATGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTT
840 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TT
* * *
5072788 CGAAAAAATTTTAAAAAATCCCGAACCTTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAG
1 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAG
*
5072853 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAA
66 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * *
5072918 AATGGCATTGCCATGCAGAAATATGAAGATGTGCCTAAACCCGCCTACCA-CCTTTCGATCGACG
131 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* *
5072982 GCTTGCGCATACCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCACTCGCTCGCCTGCTCGTTT
196 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-C-CG--C-CC-GCTCGTTT
* * * * * **
5073047 CGTCAGTTGGCTTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCA
253 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTG
* * * * ** * ** * *
5073112 GTAGCCGGATCTGTAACACATAGAGGGGAACCCGATCGATCCATGGCTTGTGCATCCCACCCCTC
318 GTAGCAGGATCAGCAGCACGCAGAGGGGGACCCG-TCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * *
5073177 TGGCCGGCTGAGCGCCCGTACAG-TTGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTA
382 TGGCCGGCTGAGCGCCCGCAC-GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* *
5073241 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAACACAC
446 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACAT
* * * * * * *
5073306 ACTGGGGTAGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CTAGGGCACCATCGCCGGAGCTTCA
511 GCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCA
* * * * * * *
5073370 CCGGAGAACCTAACTGACAGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGAGGGTGTGCGCAT
575 TCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCC-GGG-GGGTGTGCGCAC
* * * *
5073435 ATGATATGCAATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
637 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
* *
5073500 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTA
702 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * *
5073565 TTTGAAATGGGGACACTTTTTCCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTTGCTGAA
767 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* **
5073630 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTATGGCCAAAACTCCTT
832 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * *
5073695 CCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGA
1 -CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGA
* * * * *
5073760 GTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCACTATATCAATTTACAAGCCATGA
65 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
*
5073825 AAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
130 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
** *
5073890 AACTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGT
195 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CC-GCCCGCTCGTTTCGT
* * * *
5073955 CGGTTGGCTTAGCCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTA
256 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTA
* *
5074020 GCAGGATCAGCAGCACAG-AGAGGGGGACCCGGTCGATCCCCAGCTTGTGCATCCCGCCCCTCTG
321 GCAGGATCAGCAGCAC-GCAGAGGGGGACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* *
5074084 GCCGACTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATAC--A----A-----AG--
384 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* *
5074136 T-----T-C--A-TT-A---CCAGT-TAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCT
449 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * **
5074187 GGGCTCGGGCATGTACTGGTGCCGCA-TTTTCTTCGTCGGGGCACCATCACCGGAGCATCATCGG
514 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGG
* * * *
5074251 AGAACCTGACCAACGGCATTGGGGTTCCGGTGATCGTAGGGGCCGAGGGGGTGTGCACACATGAT
579 AGAACCTGACCGACGGCATTGGGGTTCCGGCGATCG-GGGGGCCG-GGGGGTGTGCGCACATGAT
* *
5074316 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACT
642 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
* * *
5074381 CACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCGGCCAGTAGCCATTAAAGTATCTGA
707 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
5074446 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
772 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
5074511 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
837 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * * *
5074571 CAGAAAAAATTTT-AAAAATTCTGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
1 C-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGA
*
5074635 GTCGTCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
65 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * *
5074700 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCGAGCACCCTAGCGATCCAC
130 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
*
5074765 GGCTTGCGCGTCCCGTCTCTCTGGCCGGCGTAGTGCCCACTCGCCCGCCCG-CCGCTCGTTTCGT
195 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-C-CGCCCGCCCGCCCGCTCGTTTCGT
* * * * ** * *
5074829 CGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCGAAGATCGGGCAAGACCGAGGGTTGTGGCA
256 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTA
* * * * * * * *
5074894 ACAGCATCAGCAGCATGCAGATGGGGACCCGGTCGATCCTCGGCTTGTGCATCCCACCCATCTGG
321 GCAGGATCAGCAGCACGCAGAGGGGGACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * * *
5074959 TCGGCTGAGTGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATGCGGTGTTCATTCCCAGTCT
385 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *
5075024 AAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACACGCTG
450 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTG
* ** *
5075089 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCCCAGA
515 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGA
* * * * *
5075154 GAACCTGACCGACGGCATTGGGGTTTCGACGATCATGGGGGCCAGGGGGTGTGCGCAGATGATGT
580 GAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
5075219 GTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
644 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* * * *
5075284 CACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAAGTAAAGTGTCTAAAA
709 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
5075349 TAGCGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTT
774 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
5075414 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
839 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * * *
5075472 CAGAAAAAATTTT-AAAAATTCTGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
1 C-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGA
*
5075536 GTCGTCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
65 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * *
5075601 AAATGGCATTGGCATGCAGGAATATGAAGATGTGCCTAAACCCACCTAGCACCCTAGCGATCCAC
130 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
5075666 GGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAATGCCCACCCGCCCGCCCGCCCGCTCGTTTCGT
195 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGCCCGCCCGCCCGCTCGTTTCGT
* * * * **
5075731 CGGTTGGCTGAGGCATACGGAGTTCATTCCCAGTCGAAGATCGGGCAAGACTGAGGGTTGTGGTA
256 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTA
* * *
5075796 GCAGGATCAGCAACACGCAGAGGGGGACCCGACTGATCCTCGGCTTGCGCATCCCGCCCCTCAT-
321 GCAGGATCAGCAGCACGCAGAGGGGGACCCGTC-GATCCCCGGCTTGCGCATCCCGCCCCTC-TG
* * * * *
5075860 GCCGACTAAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATATGGAGTTCATTCCCAGTC
384 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * * *
5075925 TGAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAAGGTTGCAGTAGCACATGCT
449 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * * * *
5075990 GGGCTCTGGCATGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATCATTGGAGCATCGTCGG
514 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGG
* * * *
5076055 AGAACCTGACCGGCGTCATTAGGGTTCCGGCGATC---GGG--GGGAGGTGTGCGCACATGATGT
579 AGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGT
5076115 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
644 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* * * * *
5076180 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTGGCAAGTAAAGTGTCTAAAA
709 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
5076245 TAGCGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
774 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
5076310 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCTAGTTTGGGGCCAAAACTCCATT
839 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TT
* * *
5076369 C-AAAAAATTTTACAAAATCCTGAACCGTAAAAAGTTTCT-AAAATCGTGAAAAATAAAAAACGA
1 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT-TAAAAATCGTGAAAAATAGAAAACGA
* * **
5076432 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTCTATGAATTTACAATTCATAA
65 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
5076497 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
130 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
** * ** *
5076562 GGCTTGCATATCCCATCTCTCTGGCCAACGTAGTGCCCACCCGCCCACCTGCCCGCTCGTTTCG-
195 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CC-GCCCGCTCGTTTCGT
** * **
5076626 CTATTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGAACTGAGGGTTG-CAT
256 C-GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGT
* * * * * * * * * * *
5076689 AGTAGGATCAGCAGCACACAAAGGGGGACCTCGACCGATCCCTGGCCTACGTATCACACCCTTCT
320 AGCAGGATCAGCAGCACGCAGAGGGGGACC-CG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * * *
5076754 GGCTGACTGAGCACCCGTACGCTCGTTTCGTGGGTTGCCTTAGGCATACGGAGTTCATTCCTAGT
383 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * *
5076819 CTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCTCATGC
448 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
* ** * * * *
5076884 TGGGCTCGGGCATATGCTGGTGCTGCA-TTTTCTTTG-CGGGGGCACCATCGTCAGAGCATCGTT
513 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCATC
* * *
5076947 GGAGAACCTGACCGATGGAATTGGGGTTCCGACGATCGGGAGGGCCGGGGGGTGTGCGCACATGA
577 GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGG-GGGCCGGGGGGTGTGCGCACATGA
* * * **
5077012 TGTGCAATAGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
641 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
* *
5077077 TCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTG
706 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
5077142 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTCGTACACTTCAACTTTTTAGCTGAATTTT
771 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * * *
5077207 TTTATGCATGGCAAAAAAAATACAGGGATCACATCTACCAAGTTTTGGACCAAAACTCCTT
836 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * *
5077268 CTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAAATAAAAAACG
1 C-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTG-AAAAATAGAAAACG
5077333 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGG-CCATTGTATGAATTTACAAGCCAT
64 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG-GGACCATTGTATGAATTTACAAGCCAT
* *
5077397 AAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
128 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* *
5077462 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCTTTTCGTCG
193 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* ** * ** *
5077527 GTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCAAGGGTTGTGGCAGC
258 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGC
* * * * * * *
5077592 AGGATCGGTAGCATGCAGAGGGGGACCCGACTGATCCCCAGCTTGCGCATTCTGCCCCTCTGGCC
323 AGGATCAGCAGCACGCAGAGGGGGACCCGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
5077657 GGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
387 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
5077722 GCATACGGAGTACATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGTAGCACATGCTGGG
452 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
5077787 CTCGGGCATATGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTTGGAGA
517 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGA
* * * *
5077852 ACCTGATCGACTGCATTGGGGTTTCGGTGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTG
582 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGG-GGGGCC-GGGGGGTGTGCGCACATGATGTG
* ** * ** *
5077917 CGATGGGTGGTGGTACTTGGCCCTTATATTTTCCCCCTATTCCTCATCAAACCTCAAGAACTCAA
645 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* *
5077982 ACGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG-ATGCCATTAAAGCGTCTGAAA
710 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA-GCCATTAAAGTGTCTGAAA
* *
5078046 TGGGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
774 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
5078111 GTGCATGCCAACAAAAATACAAGG---A----T--C-A---T---GCC--AA------
839 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * *
5078145 C--AAAAA---TACAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACAA
1 CGAAAAAATTTTA-AAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGA
* * * *
5078205 GTCGTCTTGCCATGAAACTTCATGTGAAGGATTAAGGGACCATTGTATGTATTTATAAGCCATAA
65 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
*
5078270 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCC--T--AT-CA-
130 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * ** * *
5078329 -GCTTGTGCATCCCGTCTCTCTCGCCTCCGTAGT----GCCCGCCCGCCTGCTCGTTTCGTCAGT
195 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * *
5078389 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-TAGAGGGTTGCGGTAGTA
260 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGTGGTAGCA
* * * * *
5078453 GGATCAGCAGCATGCAAAGGGGGACCCGGTCGATCCCCGACTTACGCATCTCGCCCCTCTGGCCG
324 GGATCAGCAGCACGCAGAGGGGGACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
5078518 GCTGAGTGCCCTCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-T-----TC----
388 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
5078573 C-T-----G----------GTCTAAGATCGGACCAGACGGAGGGTTGCAGCAGCACATGCTGGGC
453 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
*
5078622 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC---G---C--CGGAGAA
518 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAA
* * * ** * *
5078676 CCTAATCGGCGGCATTGGGGTTCCTACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGTG
583 CCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
5078741 ATGGGTGCTGGTAGTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
647 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
5078806 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
712 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
5078871 GGACA-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGTG
777 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * ** *
5078935 CATGCCAACAAAAATACGAGGATCATGTCTAACAAGCTTTGGGGGTAAATCTCCTT
842 CATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTT
* *
5078991 CAGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
1 C-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGA
**
5079056 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAA
65 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * *
5079121 AAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCAC
130 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
5079186 GACTTGCGCATCCCGTCTCTCTGGCCGCCGTAGT----GCTCGCCCGCCTGCTCGTTTCGTCGGT
195 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * * *
5079247 TGGCTTAGGCATACCGAATTCATTCCCATTCTAAGATCGGACCGGA-TAGAGGGTTGCGGTAGTA
260 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGTGGTAGCA
* *
5079311 GGATC-GACAGCACACAGAAGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
324 GGATCAG-CAGCACGCAGAGGGGGACCCG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
** * * *
5079375 GATTGAGCGCCCTCACGCTCGTTTTGTGGGTTGACTTAGGCACACGGAG----TT--CA-T-T--
387 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
5079430 -C-T-C---G----------GTCTAAGATCGGACCAGACGGAGGGTTGCGGCAGCACATGCTGGG
452 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
5079479 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGCCGGAGA
517 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGA
** *
5079544 ACCTGACCGGTGGCATTGGGGTTCCGGTGATCGGGGGTGCCGGGGGGTGTGCGCACATGATGTGC
582 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGG-GCCGGGGGGTGTGCGCACATGATGTGC
* *
5079609 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCT-AGAACTCAT
646 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-TGAGAACTCAC
* **
5079673 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGT-AAGTGTCAAAAAT
710 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
5079737 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
775 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * **
5079802 TGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAGCACCACC
840 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TT
* * * *
5079859 CGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAG
1 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAG
*
5079924 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAA
66 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
5079989 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCCTCATCA
131 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT--C-GATC-
* ** * * ** ** * ** * * ****** **
5080054 AACCTCTAGAACTCA-CACCCCCT-TAAAGAGCATTTGAGATTTTAAAGTGTCTG-AAATTGGGA
192 CACGGCTTG--CGCATC-CCGTCTCT-CTG-GC---CG-G--CGT--AGTGCCCGCCCGCCCGCC
* * ** *** * * * ** * * * * * * ****
5080116 C-AT-TTTTTTTCAAAT-GATCA--CAAAATC-TTGTACACTT-CGAGTTTTTAGCTGA-ATTTT
244 CGCTCGTTTCGTCGGTTGGCTTAGGC-ATA-CGGAGTTCA-TTCCCAG-TCTAAGATCAGACCGG
** * ** ** * *
5080173 TTTG-TGCAT-TAATA-CAAGGATCA-C-GTCTAC-CA-AGTTTGGGTCCAAAACTCCTTCCGAA
305 ACTGAGGGTTGTGGTAGC-AGGATCAGCAG-C-ACGCAGAG---GGG-----GAC-CCGT-CG--
****** ** ** * ** ** * * * *
5080231 AAAATTTTAAAAAATCTTGAACCGCAAAAAAGTTTCGAAAATCATCTTACC-ATTAAACTTCACG
355 ---A---T-CCCCGGCTTG---CGC-----A-TCCCG---CCCCTCTGGCCGGCTGAGC-GCCCG
* * * ** * * ** ** * * **
5080295 TAAAGGCTTAAGGGACTATT-GTATGAATTTAC-AAGAAATA-AAAATGGCATTGGCA-TGC-AA
400 --CACGC-T---CG--T-TTCG--TGGGTTGACTTAGGCATACGGAGT-TCATTCCCAGT-CTAA
** * * ** * ** * ** * ** * * * *
5080355 AAATATGAAGATGTGCCTAAACCCA-CCTACCACCATATC-GATCC-ACGACTTGC-ACATCCCG
452 GCATACG--GA-GT-TC-ATTCCCAGTCTAAGATCGGACCGGA-CCGA-GGGTTGCGGCAGCACA
* * * * * * * * *** * *
5080416 TCTCTCTGGCT--GCCGTAGTGCTCGCCTGCC-CACTCATTTCATCGATTGGCTTAGGCAT--AC
510 T-GCT-GGGCTCGGGCAT-GTGCT-G-GTGCCACA-T-TTTTCTTCG-TCGGGGCA-CCATCGTC
* * * ** * * **** ***
5080476 AGAGTTCATTCCCAGTCTAAGATTGGA-CTAGATAGA-GG-GTTGTGGTAGTAG-GATC-GCCAG
566 GGAG--CA-T--CA-TC--GGA--GAACCT-GACCGACGGCATTGGGGTTCCGGCGATCGGGGGG
* * * * * * *** *
5080536 CACGTAGAGGGG-G-ACCCA-ATCGATCCCTG-GCT-TGCGCATCCCACCCCTCTGGCCGGCTGA
620 C-CG--G-GGGGTGTGCGCACAT-GAT--GTGCGATGGGTGC-TGGTA---CT-TGGCC--CTTA
* **** * * ** * * ** * * ** ** *** *
5080596 GCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACG-GAGTTCATTCCTAGTCT-AAGATC
671 -TATTGGC-C-C-CCTATC----CCTCA-TCAAACCT-TGAGAACTCACACCCCCT-TAAAGAGC
**** * * * * * ** * * ** *
5080659 AGACCAGA--TGA-AGGGTTGC-GGCAGCA--C-GTACTGGGCTCGGGCATGTGCTGGTGC-CGT
725 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-TCTGAAATG-G--GG-ACAC-T
* * * ** * * *** * * *
5080716 ATTTTTC--TTCGTCGGGGCACCATCGTCAG-AGCATCATCGGAGAACCTGACCGACGGCATTGG
784 -TTTTTCAAATGGTC---ACAAAATC-T-TGTA-CA-CTTC-GAG-TTTTTA--G-CTGAATT--
* * * ** * * **
5080778 GGTTCCGGTGATCGGGGGTGCCGGGGGGTGTGCGC-ACATGATGTGCAATGGGTGCTGGTACTTG
834 --TT----T--T----TGTG-C-------ATGC-CAACA-AAAATACAA-GGAT-CACGT-C-T-
* * * *** *
5080842 GCCCTTA-TATT-GGCCCCCTA-TCCCT
872 -ACC-AAGT-TTGGGGCCAAAACTCCTT
* ** * * * * * * *** *
5080867 C-ATCAAACCTCT-AGAACTCAC-ACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCC
1 CGA-AAAAATTTTAAAAAATCCCGA-ACC-GT-AA-A--A----AG-TTTTA-AAAATCG-TG--
* ** * * * * *
5080929 AGTAGCCATTAAGT-GTCAAATATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
50 A--A---A--AA-TAG--AAA-A---CGAGTCGTCTTGC-CAT-G-----AAA-C-T-T-CACGT
** * * * * * * * * * *
5080993 CG-AGTTTTTAGCTGA-AATT-T-T---TTGTGCATGCCAACAAAAAT-ACA-AGG-AT-CACAT
90 -GAAGGCTTAAG-GGACCATTGTATGAATT-TACAAGCC-ATAAAAATGGCATTGGCATGCAGAA
* ** * * * * ** *** *** * * * *
5081047 CTACCAAGTTTGGGGCCAAAACACCATCCGAAAAAAGTTTAAAAAATCC-TGAAC-TGAGAAAAG
151 ATATGAAG-AT-GTGCCTAAAC-CCA-CC--TACCACCCT-ATCGATCCACG-GCTTGCG--CA-
*** **** ***** **** ** ** ** ** * **
5081110 TTTTGAAAATCAT-G-AAAAATAGAAAACGAGTCGTCTTGGCATGAAAC--TTC-ACGTGAAGGC
205 TCCCGTCTCTC-TGGCCGGCGTAGTGCCCG-CCCG-C-CCGCCCG-CTCGTTTCGTCG-GTTGGC
* * ** * * * * ** ** *** *
5081170 TTAATGGACCAT-TGTA-TAAATTTACAAGCCATAAAAAT-AGCATTGGCACACAGAAATAT-G-
264 TT-A-GG--CATACGGAGTTCA-TTCCCAGTC-T-AAGATCAG-ACCGG-ACTGAGGGTTGTGGT
** * ***** * * * *
5081230 A--A-GATGTGCCTA-AAC-CA-ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
320 AGCAGGATCAG-C-AGCACGCAGA-GGGGGACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * * * *
5081289 CTAGCCGACGTAGTGCCCGCCCGATCACCGGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATATGG
381 CTGGCCGGC-T-GAG--CGCCCG--CA------CGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * ** *
5081354 AGTTCATTCCCAGTCTAAG-AT-TGGACTGGA--CCGAGGGTGGCGGTAGCAGGATCGGTAGCAC
434 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA--GT--C--TA--A-GATCGG-A-C-C
* ** * * * * * * ** * * *** * *
5081415 GTAGAGGGGGACT-CAGGTTA-CGCATCCCGCCCCTTTGGTCGACTAAAC--G-CCCACATGCTG
487 GGACCGAGGG-TTGC-GG-CAGCACATGCTG-GGC-TCGGGC-A-TGTGCTGGTGCCACAT--TT
* * * * * * ** * * **
5081475 GT-TTGGT-GGGTTGC-CCTAGGCATACGAAG-TTCATTCCCAG--TCTAAGCATACGG-AGTT-
543 TTCTTCGTCGGG--GCACC-A-TCGT-CGGAGCATCA-TCGGAGAACCTGA-CCGACGGCA-TTG
** * ** * * * * ** * *
5081532 -CATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTGCGGCAGCACATTCTGGGCTCGA-GCATG
600 GGGTT-CC-GGC---GATCG--GGGGGCCGGGGGGTG-TGC-GCACATGATGTG--CGATG--GG
* * ** * * * **** * * * * ** *
5081595 TGCTGGTGC--CGCATTTTTCTT--CGCCGGGGCAC-CATC--GCC-GGAGAATCTGAC-CGGCG
652 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA-CTCACACCCCC
** * ** * * *** * * * * *
5081651 GCAATG-GGGTTCCAGCGATTGGGGGGGCCGGGAGGTTTGC--ACACTTG--ATGTGCAATGGGT
716 TTAAAGAGCATT--TGAGATT-----TTAC---AGGTTTGCTGCCAGTAGCCAT-T--AAAGTGT
* * * * * ** ** * * * ** ***
5081711 GCTGGTACT-TGG-CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCC
768 -CT-GAAATGGGGACACTT-T-TT----TCAAAT-GGTCA-CAAA-ATCTTGTA--CACTTCGAG
*** ** * *
5081774 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTGAAATTGGGA
820 TT-TTTAGC---TGA-ATTTT-----TTTG-TG-CA-T-GCCAACAAAAAT-AC---AA---GGA
* * ** ** * **
5081838 -CACTTTTTTCAAATGATCACGAAATCTT-GTACACTTCAAGTTTTT
864 TCAC----GTC---T-A-C-C-AAGT-TTGGGGC-C-AAAACTCCTT
**** * ** ** * ** * *
5081883 AGCTGAATTTTTTTGTGCATTAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAACTCCTTC
1 --C-GAAAAAATTT-T-AAAAAAT-C-CCGAAC-CG--TAAAAAGTTT---T--AAAAAT-CGT-
* *
5081948 CGAAAAAATTTCAAAAAATCCTGAACCGCAAAAAAGTTTCGAAAATCATCTTGCAATGAAACTTC
49 -G-AAAAA--T---AGAA-----AA-CG------AG--TCG-------TCTTGCCATGAAACTTC
* * *
5082013 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCACGTAGAA
86 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* * *
5082078 ATATGAAGATGTACCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAACCCGTCTCTC
151 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * *
5082143 TGGCCGGCGTAGTGCCCGCCCGCCAACCTGCCTGCTCGTTTCATCGGTTGTCTTAGGTATATGGA
216 TGGCCGGCGTAGTGCCCGCCCG-C--CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * ** ** *
5082208 GTTCATTCCCAGTCCAAGATCAGATCAGACCGAGGGTTACGGTAGCAGGATC-GACAATACGTAG
277 GTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGATCAG-CAGCACGCAG
* ** * * * **
5082272 AGGGGGACCCGGCCGATCCCCGGCTTAAGCATCCCACCCTTCTGGCCGGCTGAGCGCCAGCACTT
341 AGGGGGACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
*
5082337 TCGTTT-GATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTC
405 TCGTTTCG-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* ** * * *
5082401 CCAATCTAAGATCGGATTGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATATGCTGGC
469 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * *
5082466 GCCTCATTTTTCTTTGCCAGGGCACCA---TC---G--TCA---GAGAACTTGACCGACGGCATT
534 GCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATT
* * * * * * *
5082520 AGGCTTTCGGGGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATAGGTGCTGGTATTT
599 GGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
** ** *
5082585 GGCCCTTATATTTTCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCATAAAGAGCATT
663 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
*
5082650 TGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
728 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
5082715 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATA
793 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * *
5082780 CAAAGATCACGTCTACCAAGTTTGGGACCAAAACTGCAT
858 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * *
5082819 CTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAA
1 C-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGA
5082884 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
65 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
*** ** * * *
5082949 AAATGGCATTGGCACATAGAAATATGACCATGTGCATAAACCCACCTACCACCATATCGATCCAT
130 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
*
5083014 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCACCCGCCCGCTCGTTTTC-T
195 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT---GCCCGCCCGCCCGCCCGCTCG-TTTCGT
** ** * * * ** * ***
5083078 TTGTTGGCTTAGGCATACAAAGTTCATACCTAGTCTAAGATCAAACTAGACCGAGGGTTGTCACA
256 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTA
* * * * * *
5083143 GCAGGACCGGCAGCACGCAGAGGGGGACTCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTAG
321 GCAGGATCAGCAGCACGCAGAGGGGGACCCG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * *
5083208 CCGGCTGAGCGTCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
385 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * *
5083273 AAGCATACGGAGTTCATTCCCAGACTAAGATCGG-TCGGACCGAGGTTTGTGGCAGCACATGCTG
450 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTG
* * * * ** *
5083337 GGCTCGGGCATGTGCTGGTGCCGCACTTTTCTTCGTCGGGGCACCATCGACGGAGCAACGCCAGA
515 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGA
* *
5083402 GAACCTGACCGACGGTATTGGGGTTCCGGCGATCGGGGGGGCCGGTGGGGTGTGCGCACATGTTG
580 GAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGG-GGGGTGTGCGCACATGATG
* * * * *
5083467 TACGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTACCCCTCATCAAACCTCGTGAACTC
643 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
*
5083532 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTACAGTGTCTGAA
708 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
5083597 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTT
773 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** ** * *
5083662 TGTGCATGCTTAC-AAAATACAAGGATCTTGTCTACCAAGTTTAGGGCCAAAACTCCATC
838 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TT
* * * * *
5083721 CGAAAATATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCCTAAAAAATATAAAACGAG
1 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAG
*
5083786 TCGTCTTGCCATGAAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
66 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * * *
5083851 AATGGCATTGGCACGTAGAAATATGAAGACGTACCAAAACCCACCTACCACCCTATCGATCCACG
131 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
5083916 GCTTGCGCATCCTGTATCTCTGGCCGGCGTAGT----GCCCGCCTGCCCGCTCATTTCGTCGGTT
196 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * **
5083977 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAGTAGCAGG
261 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGG
* * * * *
5084042 ATCAGCAGCACGCAGAGGGGGACCTAGCCTATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGAC
326 ATCAGCAGCACGCAGAGGGGGACC-CGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
5084107 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGATCATTTCCATTCTAAGCA
390 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
** ** * * * *
5084172 TACAAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGTAGAACTTGCTGGGCCC
455 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
**
5084237 GGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCA---TC---GC--CA---GAGAACC
520 GGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACC
* * * * * *
5084291 TGACCGGCGGCATTGGCGTTCCAGCGATTGGGGGGGCC-AGGGGTGTGCGCACATGATGTACGAT
585 TGACCGACGGCATTGGGGTTCCGGCGA-TCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
*
5084355 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCGCACCC
649 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
* * * * * *
5084420 CCTTAAAGAGCATTTGAGATTTTACAGGCTTGTTACTAGTAGCTATTAAAGTGTCTAAAATGGGG
714 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * * *
5084485 ACATTTTTTTGAAATGGTCACAAAATCTTATACACTTCGTGTTTCTAGCTGAATTTTTTTGTGCA
779 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
5084550 TGCCAACAAAAATACAAGGATCATGTGTACCAAGTTTGGGGCCAAAACTCCTT
844 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * * *
5084603 CCAAAAAAATTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAG
1 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAG
* *
5084668 TCGTCTTGGCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
66 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
** * *
5084733 AATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACT
131 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
5084798 GCTTGTGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCGTTCGTTTCGTCGGTT
196 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * *
5084859 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACCGGATTGAGGCTTGCGGCAGTAG
261 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCGGACTGAGGGTTGTGGTAGCAG
* * * * * *
5084923 GATCGGCAGCACTCAAAGGGGGACCCGGCTGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGG
325 GATCAGCAGCACGCAGAGGGGGACCCGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
5084988 CTGAGCGCCCGCACGCTTGTTTCGTGCGTTGACTTAGGCATACGGGGTTCATTCCCAGTCTAAGC
389 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* *
5085053 ATACGGAGATCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCT
454 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
** * * * *
5085118 CGGGCATGTGCTGGTGCTGCAATTTTCTTCGTTGGGGCACCATCGTCGGAGCATC-GCTAGAGAA
519 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATC-GGAGAA
** * * * * * *
5085182 CCTGACCGGTGGCATTGGGCTTCCGACGATCGAGGGGACCGGGGGGGTGTGCACCCATGATGTGT
583 CCTGACCGACGGCATTGGGGTTCCGGCGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTGC
5085247 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
646 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* *
5085312 CCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATG
711 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
5085377 GGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTGT
776 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *** *
5085442 ACAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAACGCCAAAACTCCTG
841 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * *
5085498 CTGAAAAAATTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
1 C-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGA
*
5085563 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCCATAA
65 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
5085628 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCTACCTACCGCCCTATCGATCCAT
130 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
5085693 GGCTTACGCATCCCATCTCTCTGGCCGGCGTAGTGCCCACCCGCCCACCCGCCCGCTTGTTTCGT
195 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGCCCGCCCGCCCGCTCGTTTCGT
* * * * * * *
5085758 CGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGAC-CAGGGTTGCGGCA
256 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTA
* ** * * * * **
5085822 CCAGGATC-GACAGCACATAGAGGGGGACCCGATCAATCCTCGACTTGCACATCCTACCCCTCTG
321 GCAGGATCAG-CAGCACGCAGAGGGGGACCCG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * * * * *
5085886 GTCGACTGAGCGCCTGCACGCTCATTTCATGGGTTAACTGAGGCATACGGAGTTCATTCCCAGTC
384 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * *
5085951 TAAGCA-ATTGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGACAGCACATGC
449 TAAGCATA-CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
** *
5086015 TGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCA---TC---G---C--CG
513 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCG
** * * * * *
5086069 GAGAACCTGACCGGTGGCATTGGGGTTTCGGTGATAAGGGGGGTCGGGGGGGTGTGCACACATGA
578 GAGAACCTGACCGACGGCATTGGGGTTCCGGCGAT-CGGGGGG-CCGGGGGGTGTGCGCACATGA
* * ** ** * *** ** *
5086134 TGTGCGTTGGGTCCACACATGAAACTTCACGTGAAGGCTTA-A-GGGACCATTGTATGAACTTA-
641 TGTGCGATGGGT----GC-TGGTACTT---G-G--CCCTTATATTGG-CC-CCCTAT-CCCTCAT
* * * * **** * ** * * * * ** *
5086196 CAAGCCAT-AAAAATGGCATTGTCACGCAAA-A--ATATGAAGATGTGCCTA-AAGCTACCTACC
692 CAAACCTTGAGAACT--CACACCCCCTTAAAGAGCATTTG-AGAT-T--TTACAGGTTTGCTGCC
* * * * * * *** * * *** ** * * **
5086256 ACCCTATCGATCCACAGCT-TGC-G-TAT-CCAATCTCTCTGGCCAGCGTAGTGC-C-CACCCGT
751 A--GTAGCCAT-TAAAG-TGT-CTGAAATGGGGA-CACTTTTTTCA-AATGGT-CACAAAATC-T
* * * * * ** * * * * ** *
5086315 TCGT-C-CGTCCG-CTCATTTCATC-G-GTTGGCTTAG-GCATACGGAGTTCATTCCCAGT-CTA
807 T-GTACAC-TTCGAGT--TTTTAGCTGAATT-TTTTTGTGCATGC-CA--ACA---AAAATAC-A
* * * * ** * ** **
5086373 A-GATCA-GACTGAACTGAGGGTTACGACAGCAGGA-T-CGG
860 AGGATCACGTCT--AC-CAAGTTTGGGGC--CAAAACTCCTT
* ***** *** * * * * * **** ** **
5086411 CAGCACACAGAGGGGGACGCGACCGATCCCTG-A-CTTATACA-TCTCACCCCTC-TGGCCAGCT
1 C-G-A-A-AAAATTTTA----AAAAATCCC-GAACCGTAAAAAGTTTTAAAAATCGT-GAAAAAT
* * ** * ** * * * * ** *
5086472 GGGCACCCGCACGCTCGT-TT--CGTG--GGTTGAC-T-TAGGCATACGGAGTTCATTCCTA-G-
56 -AGAAAACG-A-G-TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG-GACCATT-GTATGA
* * * * * ** * ** ** * **
5086528 -TCT--AAG-CAT----ACGG-AGT-CCATTC-CCAATCT-AAGATCGAACC-GGACCAAGGTTT
115 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT-GTGCCTAAACCCA--CCT
* * ** * * * * * *
5086580 ACGGCA-GC-A-C-ATGCTGGGCTCGAGCAT---G--T-TCTGG--TGCTGTATTTTTCTTCGCC
177 AC--CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC-GTA--GTGC-CCGCC
* ** * * *** * *** * * *
5086633 GGGGCACCATCGCTGGAGAACCT-GACCGGC---GGCAT-TGG-G---GTT-CC-GGC---GATC
236 CGCCCGCC--CGCTCG-TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
** * * * * * * ** * ** * *
5086684 -G-GGGGGCCGGGGGGTGTGCGCA-CATGATGTGCGATGGGCACTG-AGCGCCCGCACGCTCATT
298 AGACCGGACTGAGGGTTGTG-GTAGCAGGATCAGC-A---GCAC-GCAGAG-GGGGAC-C-C--G
*** * * **** ** ** * * ***
5086745 TCG-TCGGTTGGCTTAG-GAAT-ACGGGGTTCATTCCCATTCTAAGATTG-GACCGGACTGAGGG
352 TCGATC-CCCGGCTT-GCGCATCCCGCCCCTC-TGGCC-GGCT--GA--GCGCCCGCAC-GCTCG
* * *** * * * * * * ** *
5086806 TTACGATAGCAGGATCGGTAGCACGCAGAGGGGGACACGGTCGA-TCCCCGACTTGTGCATCCCG
408 TTTCG-TGGGTTGA-C-TTAG---GCATA--CGG--A-GTTC-ATTCCCAGTC-TAAGCAT-ACG
**** ** * * * ** ** * * * *
5086870 CCCCTC-TGGCC-GGCTAACGCTCGTTTCATGGGTTGACTTAGGGATACGAAGTTCATTCCCA-G
459 GAGTTCATTCCCAGTCTAA-GATCG---GA-CCG--GACCGAGGGTTGCG--G--CA-GCACATG
** * * ** * * *
5086932 TCTAAGCATACGGAGTCCAT-TCCCAGTCTAAGATCGAATCGGACCGAGGGTTGCGGTAGCACAT
512 -CTGGGC-T-CGG-G--CATGT----G-CT--GGT-G---C-CA-C-A-TTTTTC--T---TCGT
** * * * *
5086996 GCTGGAATCAGGCAT-GTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCG-CC-A-GAGCA
551 -C-GG-GGCA-CCATCGT-C-GGAG---CA----TCATCG--GA-GAACC-T-GACCGACG-GCA
* ** * * * ***
5087057 TCGTCGGAGAACC--TGA-CCGGCGGCATTGGGGT-T-C-CAACGATAGGAGGCCGGGGGGTGTG
597 T--T-GGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGC-AC-AT--GA----------TGTG
* **** ** ****
5087116 CGCCCATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
645 CG---ATG-GGTGC--TGGTACTTGGCCCTTATAT-------TGGCCCCCTATCCCTCATCAAAC
* * *
5087181 CTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCACTAGCCATTA
697 CTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
5087246 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTGTTTAG
762 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * *
5087311 CTGAATTTTTTTGTGCACGCCAAAAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAAC
827 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
5087376 TCCTTT
892 TCC-TT
* ** *** * *
5087382 CAAAAAAATTTTAAAAAATTTC-AA-AAAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
1 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAG
5087445 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
66 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * * * *
5087510 AATGGCACTGGCATGTAGAAATATGAAGATGGGCCTAAACCCACCTACCACCCTATCAATCAACA
131 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* ** * * * * *
5087575 GCTTGCGTATCTTGTCTCTCTAGCCGGTGTACTACCCGTCCGTTCGCCCGCCTGCTCGTTTCGTC
196 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC---CGCCCGCCCGCTCGTTTCGTC
* * * * * * * * *
5087640 GATTGGCTGAGGCATATGGAGTTCATTCCCATTCTAAGATCAGATCGGTCTGAGGATTGCGGCAG
257 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAG
** * * *
5087705 CAGGATTGGCAGCATGCAGAGGGGGACCCGGCAGATCCCCGGCTTGCGCATCCCGCCCTTCTGGC
322 CAGGATCAGCAGCACGCAGAGGGGGACCCGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
** * * **
5087770 CGGCTGAGCATCCGCATGCTAGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
386 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * * *
5087835 AGCACATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGACAGCAAATACTGG
451 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* ** * * **
5087900 GCTGGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAG
516 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAG
* ** ** *
5087965 AACTTGACCGGTGGCATTGGGGTTTTGGCGATCGAGAGGGGCCAGGGGGGTGTCCGCACATGATG
581 AACCTGACCGACGGCATTGGGGTTCCGGCGATCG-G-GGGGCC-GGGGGGTGTGCGCACATGATG
* * * *
5088030 TGCGATGGGTGCTGGTACTTGGCCCTTATGTTGTCCCCCTATCCCTTATCAAACCTCGAGAACTC
643 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
* *
5088095 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAA
708 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
5088160 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
773 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
5088225 TGTGCATGCCAAAAAAAATACAAGGACCATGTCTACCAAGTTTGGGGCTAAAACTCCTTT
838 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TT
* * * ** * * *
5088285 CGAAAAAATTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCACGAAAAATAAAAAATGAA
1 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAG
* *
5088350 TCGTCTTGCCATGAAACTTCACCTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAA
66 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * * * *
5088415 AACGGCATTGGCATGTAAAAATATGAAGATATGCCTAAACTCACCTACCACTCTATCGATCCACG
131 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
5088480 GCTTGCGCATCCCGTCTCTCTGGCTGGCATAGTGCCCGCCCGCCCGTCCGCTCATTTCGTCGGTT
196 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* ** ** *
5088545 GGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATTGGACCGGTTTGAGGGTTGTGGCAGCAGG
261 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGG
* * * * * *
5088610 ATGAACAGCACGCAGAGGGAGACCCGATCGATCCCCGGCTTGCGCATTCTGCCCCTCTGGCCGAC
326 ATCAGCAGCACGCAGAGGGGGACCCG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
5088675 TAAACGCCCGCACGCTCGTTCCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
390 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* **
5088740 TACGGAGTTCACTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTATGCTC
455 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* ** * * ** *
5088805 GGGCATGTGCTGGTGTCACATTTTTCTTCACCGAGGCACCATCATCGGAGCATCGCCAGAGAACC
520 GGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACC
* * * *
5088870 TGACCGACGGCATTGGGGTTTCGGTGATTGGGGGGACCGGGGGGGGTGTGCGCACATGATGTACG
585 TGACCGACGGCATTGGGGTTCCGGCGATCGGGGGG-CC--GGGGGGTGTGCGCACATGATGTGCG
* * * * * *
5088935 TTGGGTGATGGTACTTGGCCCTTATATTGGACCCCTATCCCTTATCAAACCTCGTGAACTCACAC
647 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
* * * *
5089000 CCCCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAACTGTTTGAAATGG
712 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
5089065 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
777 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
5089130 CATGCCAACAAAAGTACAAGGATCATGTCTACCACGTTTGGGGCCAAAAATCCTTT
842 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TT
* * *
5089186 CTAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
1 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAG
* * *
5089251 TCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGTGTCCATTGTATGAATTTACAAGCCATAAA
66 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
5089316 AATGGCATTGGAACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATG
131 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* ** *
5089381 GCTTGCGCATCCCGTCCCTCTGGCCAACATAGTGCCCGCCCGCCCGCCAACCCGCTCGTTTCGTC
196 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG----CCCGCTCGTTTCGTC
* *
5089446 GGTTGGCTTAGGCATACGGAGTCCATTCCCAGTCTAAGATCAGACCGGA-TCGAGGGTTATGGTA
257 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGTGGTA
* * * * * * *
5089510 GCAGGATC-GACAGCACGCAGACGAGGACCCGACCGATCCCCGGCTTGTGGATCCCACCCTTCTG
321 GCAGGATCAG-CAGCACGCAGAGGGGGACCCG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* *
5089574 GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTC
384 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* ** * * *
5089639 TAAGCATACGGAGTTAATTCCCAGTCTAAGATCGGACTAGACCAAGGGTTGCAGTAGCACATGCT
449 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* *
5089704 GGGCTCGGGCATGTGCTGGGGCCGCATTTTTCTTCGTC-GGGCACCA---T-----CA-C--CGG
514 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGG
* *
5089757 AGAACCTGACCGACGGCATTGGGGTTCCAGTGATCGGGTGGGCC-GGGGGTGTGCGCACATGATG
579 AGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGG-GGGCCGGGGGGTGTGCGCACATGATG
*
5089821 TGGGATGG
643 TGCGATGG
5089829 TGTAGCCGGT
Statistics
Matches: 14108, Mismatches: 2720, Indels: 2227
0.74 0.14 0.12
Matches are distributed among these distances:
821 77 0.01
822 145 0.01
823 36 0.00
824 3 0.00
825 1 0.00
828 2 0.00
830 1 0.00
831 3 0.00
834 81 0.01
835 1 0.00
838 1 0.00
840 1 0.00
844 1 0.00
846 1 0.00
849 6 0.00
850 1 0.00
851 156 0.01
852 2 0.00
853 1 0.00
854 2 0.00
855 3 0.00
856 2 0.00
857 5 0.00
858 297 0.02
859 1 0.00
860 177 0.01
861 4 0.00
864 30 0.00
866 2 0.00
867 191 0.01
868 48 0.00
869 233 0.02
870 6 0.00
871 129 0.01
872 35 0.00
873 9 0.00
874 173 0.01
875 196 0.01
876 269 0.02
877 74 0.01
878 63 0.00
879 21 0.00
880 8 0.00
881 11 0.00
882 716 0.05
883 63 0.00
884 49 0.00
885 11 0.00
886 78 0.01
887 178 0.01
888 8 0.00
889 6 0.00
890 304 0.02
891 209 0.01
892 240 0.02
893 90 0.01
894 315 0.02
895 536 0.04
896 716 0.05
897 31 0.00
898 185 0.01
899 358 0.03
900 601 0.04
901 1914 0.14
902 795 0.06
903 484 0.03
904 109 0.01
905 619 0.04
906 38 0.00
907 362 0.03
908 349 0.02
909 162 0.01
910 13 0.00
911 10 0.00
912 14 0.00
913 17 0.00
914 15 0.00
915 14 0.00
916 23 0.00
917 13 0.00
918 17 0.00
919 19 0.00
920 11 0.00
921 12 0.00
922 15 0.00
923 6 0.00
924 11 0.00
925 4 0.00
926 6 0.00
927 19 0.00
928 5 0.00
929 5 0.00
930 6 0.00
931 4 0.00
932 4 0.00
933 1 0.00
934 13 0.00
935 4 0.00
936 7 0.00
937 6 0.00
938 10 0.00
939 2 0.00
940 2 0.00
941 1 0.00
942 2 0.00
943 3 0.00
944 15 0.00
945 25 0.00
946 10 0.00
947 7 0.00
948 14 0.00
949 7 0.00
950 6 0.00
951 4 0.00
952 2 0.00
953 3 0.00
954 13 0.00
955 20 0.00
956 17 0.00
957 12 0.00
958 12 0.00
959 7 0.00
960 9 0.00
961 3 0.00
962 15 0.00
963 25 0.00
964 17 0.00
965 14 0.00
966 22 0.00
967 20 0.00
968 36 0.00
969 22 0.00
970 26 0.00
971 41 0.00
972 18 0.00
973 14 0.00
974 20 0.00
975 30 0.00
976 31 0.00
977 39 0.00
978 43 0.00
979 39 0.00
980 25 0.00
981 21 0.00
982 21 0.00
983 17 0.00
984 30 0.00
985 11 0.00
986 22 0.00
987 20 0.00
988 17 0.00
989 5 0.00
990 7 0.00
991 15 0.00
992 11 0.00
993 3 0.00
994 8 0.00
995 8 0.00
996 1 0.00
997 4 0.00
998 5 0.00
999 19 0.00
1000 7 0.00
1001 16 0.00
1002 22 0.00
1003 15 0.00
1004 14 0.00
1005 4 0.00
1006 8 0.00
1007 15 0.00
1008 15 0.00
1009 10 0.00
1010 18 0.00
1011 10 0.00
1012 56 0.00
1013 33 0.00
1014 18 0.00
1015 16 0.00
1016 41 0.00
1017 33 0.00
1018 26 0.00
1019 22 0.00
1020 22 0.00
1021 22 0.00
1022 42 0.00
1023 33 0.00
1024 350 0.02
1025 310 0.02
1026 242 0.02
1027 243 0.02
1028 234 0.02
1029 204 0.01
1030 286 0.02
1031 271 0.02
1032 239 0.02
1033 309 0.02
1034 190 0.01
1035 166 0.01
1036 205 0.01
1037 340 0.02
1038 240 0.02
1039 190 0.01
1040 677 0.05
1041 261 0.02
1042 204 0.01
1043 285 0.02
1044 139 0.01
1045 432 0.03
1046 238 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAG
TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGG
ATCAGCAGCACGCAGAGGGGGACCCGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
GGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCT
GACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
Found at i:5073258 original size:26 final size:26
Alignment explanation
Indices: 5073221--5073273 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5073211 GTTGACTTAG
*
5073221 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5073247 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5073273 G
1 G
5073274 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5075038 original size:26 final size:26
Alignment explanation
Indices: 5075000--5075052 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5074990 GTTGACTTAG
* *
5075000 GCATGCGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5075026 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5075052 G
1 G
5075053 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5075938 original size:26 final size:26
Alignment explanation
Indices: 5075902--5075951 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
5075892 GTTAACTTAG
5075902 GCATATGGAGTTCATTCCCAGTCTGA
1 GCATATGGAGTTCATTCCCAGTCTGA
5075928 GCATATGGAGTTCATTCCCAGTCT
1 GCATATGGAGTTCATTCCCAGTCT
5075952 AAGATCGGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTGA
Found at i:5076826 original size:26 final size:26
Alignment explanation
Indices: 5076797--5076849 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5076787 GTTGCCTTAG
*
5076797 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
5076823 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
5076849 G
1 G
5076850 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:5077732 original size:26 final size:26
Alignment explanation
Indices: 5077696--5077748 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5077686 GTTGACTTAG
* *
5077696 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
5077722 GCATACGGAGTACATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
5077748 G
1 G
5077749 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAGTCTAA
Found at i:5081531 original size:26 final size:26
Alignment explanation
Indices: 5081494--5081546 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5081484 GTTGCCCTAG
5081494 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5081520 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5081546 G
1 G
5081547 ATCGAACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5082394 original size:26 final size:26
Alignment explanation
Indices: 5082358--5082410 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5082348 GTTGACTTAG
*
5082358 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
5082384 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5082410 G
1 G
5082411 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5083285 original size:26 final size:26
Alignment explanation
Indices: 5083249--5083301 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5083239 GTTGACTTAG
*
5083249 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
5083275 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACGGAGTTCATTCCCAGACTAA
5083301 G
1 G
5083302 ATCGGTCGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:5084183 original size:26 final size:26
Alignment explanation
Indices: 5084140--5084195 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
5084130 TGGGTTGACT
** * *
5084140 TAAGCATACGGAGATCATTTCCATTC
1 TAAGCATACAAAGATCATTCCCAGTC
*
5084166 TAAGCATACAAAGTTCATTCCCAGTC
1 TAAGCATACAAAGATCATTCCCAGTC
5084192 TAAG
1 TAAG
5084196 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (26 bp):
TAAGCATACAAAGATCATTCCCAGTC
Found at i:5085065 original size:26 final size:26
Alignment explanation
Indices: 5085025--5085077 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5085015 GTTGACTTAG
* *
5085025 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
5085051 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
5085077 G
1 G
5085078 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:5086543 original size:26 final size:26
Alignment explanation
Indices: 5086507--5086559 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5086497 GTTGACTTAG
* * *
5086507 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTCCATTCCCAATCTAA
5086533 GCATACGGAGTCCATTCCCAATCTAA
1 GCATACGGAGTCCATTCCCAATCTAA
5086559 G
1 G
5086560 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAATCTAA
Found at i:5086697 original size:578 final size:577
Alignment explanation
Indices: 5085573--5086721 Score: 1601
Period size: 579 Copynumber: 2.0 Consensus size: 577
5085563 GTCGTCTTGC
* *
5085573 CATGAAACTTCACGTGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
1 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATGGCATT
* * **
5085638 GGCACGCAGAAATATGAAGATGTGCCTAAACCTACCTACCGCCCTATCGATCCATGGCTTACGCA
66 GGCACGCAAAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACAGCTTACGCA
* * ** *
5085703 TCCCATCTCTCTGGCCGGCGTAGTGCCCACCCGCCCACCCGCCCGCTTGTTTCGTCGATTGGCTT
131 TCCAATCTCTCTGGCCAGCGTAGTGCCCACCCGCCCACCCGCCCGCTCATTTCATCGATTGGCTT
* * * * *
5085768 AGGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCAGGGTTGCGGCACCAGGATCGAC
196 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCAGGGTTACGACACCAGGATCGAC
* * * * *
5085833 AGCACATAGAGGGGGACCCGATCAATCCTCGACTTGCACATCCTACCCCTCTGGTCGACTGAGCG
261 AGCACACAGAGGGGGACCCGACCAATCCTCGACTTACACATCCTACCCCTCTGGCCGACTGAGCA
* *
5085898 CCTGCACGCTCATTTCATGGGTTAACTGAGGCATACGGAGTTCATTCCCAGTCTAAGCAATTGGA
326 CCCGCACGCTCATTTCATGGGTTAACTGAGGCATACGGAGTTCATTCCCAGTCTAAGCAATCGGA
* * * * *
5085963 GTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCAT
391 GTCCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTACGACAGCACATGCTGGGCTCGAGCAT
* *
5086028 GTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGCCGGAGAACCTGACCGGTGGCATTGGG
456 GTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCGGAGAACCTGACCGGCGGCATTGGG
* * * *
5086093 GTTTCGGTGATAAGGGGGGTCGGGGGGGTGTGCACACATGATGTGCGTTGGGTCCACA
521 GTTCCGGCGATAAGGGGGG-CCGGGGGGTGTGCACACATGATGTGCGATGGGTCCACA
5086151 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATGGCATT
1 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATGGCATT
* * * *
5086216 GTCACGCAAAAATATGAAGATGTGCCTAAAGCTACCTACCACCCTATCGATCCACAGCTTGCGTA
66 GGCACGCAAAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACAGCTTACGCA
** ** * *
5086281 TCCAATCTCTCTGGCCAGCGTAGTGCCCACCCGTTCGTCCGTCCGCTCATTTCATCGGTTGGCTT
131 TCCAATCTCTCTGGCCAGCGTAGTGCCCACCCGCCCACCCGCCCGCTCATTTCATCGATTGGCTT
* *
5086346 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGAACTGAGGGTTACGACAGCAGGATCG
196 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GAAC-CAGGGTTACGACACCAGGATCG
* * * *
5086410 GCAGCACACAGAGGGGGACGCGACCGATCC-CTGACTTATACAT-CTCACCCCTCTGGCC-AGCT
259 ACAGCACACAGAGGGGGACCCGACCAATCCTC-GACTTACACATCCT-ACCCCTCTGGCCGA-CT
* * * * * *
5086472 GGGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGC-A
321 GAGCACCCGCACGCTCATTTCATGGGTTAACTGAGGCATACGGAGTTCATTCCCAGTCTAAGCAA
* *
5086536 TACGGAGTCCATTCCCAATCTAAGATC-GAACCGGACCAAGGTTTACGGCAGCACATGCTGGGCT
386 T-CGGAGTCCATTCCCAATCTAAGATCAG-ACCGGACCAAGGGTTACGACAGCACATGCTGGGCT
* * * *
5086600 CGAGCATGTTCTGGTGCTGTATTTTTCTTCGCCGGGGCACCATCGCTGGAGAACCTGACCGGCGG
449 CGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCGGAGAACCTGACCGGCGG
* *
5086665 CATTGGGGTTCCGGCGAT-CGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
514 CATTGGGGTTCCGGCGATAAGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGG
5086722 CACTGAGCGC
Statistics
Matches: 500, Mismatches: 64, Indels: 15
0.86 0.11 0.03
Matches are distributed among these distances:
577 30 0.06
578 223 0.45
579 247 0.49
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.23
Consensus pattern (577 bp):
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATGGCATT
GGCACGCAAAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACAGCTTACGCA
TCCAATCTCTCTGGCCAGCGTAGTGCCCACCCGCCCACCCGCCCGCTCATTTCATCGATTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCAGGGTTACGACACCAGGATCGAC
AGCACACAGAGGGGGACCCGACCAATCCTCGACTTACACATCCTACCCCTCTGGCCGACTGAGCA
CCCGCACGCTCATTTCATGGGTTAACTGAGGCATACGGAGTTCATTCCCAGTCTAAGCAATCGGA
GTCCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTACGACAGCACATGCTGGGCTCGAGCAT
GTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCGGAGAACCTGACCGGCGGCATTGGG
GTTCCGGCGATAAGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTCCACA
Found at i:5086943 original size:26 final size:26
Alignment explanation
Indices: 5086913--5086963 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5086903 TGACTTAGGG
*
5086913 ATACGAAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTCCATTCCCAGTCTAAGC
*
5086939 ATACGGAGTCCATTCCCAGTCTAAG
1 ATACGAAGTCCATTCCCAGTCTAAG
5086964 ATCGAATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACGAAGTCCATTCCCAGTCTAAGC
Found at i:5087413 original size:14 final size:15
Alignment explanation
Indices: 5087394--5087423 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
5087384 AAAAAATTTT
5087394 AAAAAA-TTTCAAAA
1 AAAAAAGTTTCAAAA
5087408 AAAAAAGTTTCAAAA
1 AAAAAAGTTTCAAAA
5087423 A
1 A
5087424 TCATGAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.70, C:0.07, G:0.03, T:0.20
Consensus pattern (15 bp):
AAAAAAGTTTCAAAA
Found at i:5088740 original size:26 final size:26
Alignment explanation
Indices: 5088711--5088763 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5088701 GTTAACTTAG
*
5088711 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
5088737 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
5088763 G
1 G
5088764 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:5089645 original size:26 final size:26
Alignment explanation
Indices: 5089616--5089668 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5089606 GTTGACTTAG
*
5089616 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTAATTCCCAGTCTAA
*
5089642 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGCTAATTCCCAGTCTAA
5089668 G
1 G
5089669 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTAATTCCCAGTCTAA
Found at i:5090549 original size:26 final size:26
Alignment explanation
Indices: 5090518--5090569 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
5090508 AAAACCCCTT
*
5090518 CCGAAAAAATTTTAAAAAATCCTGAA
1 CCGAAAAAAGTTTAAAAAATCCTGAA
* *
5090544 CCGAAAAAAGTTTCAAAAATCGTGAA
1 CCGAAAAAAGTTTAAAAAATCCTGAA
5090570 AAATAGAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.52, C:0.15, G:0.12, T:0.21
Consensus pattern (26 bp):
CCGAAAAAAGTTTAAAAAATCCTGAA
Found at i:5090975 original size:26 final size:26
Alignment explanation
Indices: 5090941--5090993 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5090931 GTTGACTTAG
*
5090941 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
5090967 GCATGCGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
5090993 G
1 G
5090994 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:5091598 original size:894 final size:892
Alignment explanation
Indices: 5089864--5092708 Score: 3917
Period size: 894 Copynumber: 3.2 Consensus size: 892
5089854 CCGCTCGGCT
* ** * * * **
5089864 GCTCATTTCGTCGGTTGGCTTACACGTATGGAGTTCATTCCCATTCTAAGATCAGACCGGTCTGA
1 GCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGA
** * * *
5089929 GGGTTGCAGCAGCAGGATCGGCAGCATGCAAAGGGGGACTCGATCGATCTCC-GGCTTGCGCATC
66 GGGTTGTGGCAGCAGGATCGGCAGCACGCAAAGGGGGACCCGATCGATC-CCTGGCTTGTGCATC
* * * * *
5089993 CCGCCCCTCTGGTCGGCTGAGCATCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTT
130 CCACCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
* * * *
5090058 CATTCCCAGTCTAAGCACACGGAGTTTATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGG
195 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
* * * * * *
5090123 TAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCACCGGGGCACCATCGTCGG
260 CAGCACATGCTAGGCTCAGGCATGTGCTGGTGCTGCATTTTTCTTC-GCGAGGCACCATCCT-GG
* * ** * *
5090188 AGCATCGCCGGAGAACCTGATCGGTGGCATTGGGGTTTTGGCGATC-GGGGGCCCGGGGGGGTGT
323 AGCATCGTCGGAGAACCTGACCGG-GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGT
* *
5090252 GCGCACATGATGTGTGATGGGTGCTGGTGCTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAA
387 GCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
5090317 CCTCGAGAACTCACACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATT
452 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
5090382 AAAGTGTTTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTA
517 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * *
5090447 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCTCATCAACCAAATTTGGGGCCAAAA
582 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC-AATTTGGGGCCAAAA
* *
5090512 CC-CCTTCCGAAAAAATTTTAAAAAATC-CTGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATA
646 CCTCCTTCCAAAAAAATTTTAAAAAATCTC-GAACCGAAAAAAGTTTCAAAAATCATGAAAAATA
5090575 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
710 GAAAA-GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
5090640 AGCCATAAAAGTGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTAT
774 AGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * *
5090705 CGATCCACGGCCTGCGCATCCCGTCTCTCTGGCCAACCTAGTGCCCGCCCGCCC
839 CGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACATAGTGCCCGCCCGCCC
* * * *
5090759 GCTCGTTTCGTCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGAT-TGAACCAAACTG
1 GCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGAACTG
* * * * * *
5090823 AGGGTTGTGGCAGTAGGATCGGCAGCACGTAGAGGGTGACTC-AGTTGATCCCTGGCTTGTGCAT
65 AGGGTTGTGGCAGCAGGATCGGCAGCACGCAAAGGGGGACCCGA-TCGATCCCTGGCTTGTGCAT
* * * * *
5090887 CCCGCCCCTCTGGCCGACTGAGCGCCCGTATGCTCATTTCATGGGTTGACTTAGGCATACGGAGT
129 CCCACCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
* * * *
5090952 TCATTCCCAGTCTAAGCATGCGGAGCTCATTCCCAGTCTAAGATCGGACCAGACCGGGGGTTGCG
194 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG
* * **
5091017 GCAGCACATGCTAGGCTCAGGTATGTGCTGATGCTGCATTTTTCTTCGTCGACACACCATCACTG
259 GCAGCACATGCTAGGCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCG-CGAGGCACCATC-CTG
* * * *
5091082 GAGCATCGTCAGAGAACTTAACCGGCGGCGTTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGT-
322 GAGCATCGTCGGAGAACCTGACCGG-GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTG
*
5091146 TGCGCACATGATGTGTGGTGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAA
386 TGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
5091210 ACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
451 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
5091275 TAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
516 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * *
5091340 AGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCACATTCGGGG-AAAA
581 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA-ATTTGGGGCCAAA
* * * *
5091404 ACCTCCTTCCCAAAAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTCACAAATCATGAAAAATA
645 ACCTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATA
*
5091469 GAAAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
710 GAAAA-GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* **
5091534 AGCCATAAAAATGGCTTTGGCATGTAGAAATATGAAGATGTGCCTAGGCCCACCTACCACCCTAT
774 AGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * ** *
5091599 CGATCCATGGCTTGCGCATCCCGCCTCTCTGGCTGACGTAGTGCCCGTTCGTCC
839 CGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACATAGTGCCCGCCCGCCC
*
5091653 GCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGA
1 GCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGA
* * * * * * *
5091718 GGGTTGTGGTAGTAGGATCGACAGCACGTAAAGGGGGACCCGATCGATCCCCGACTTGTGC-TTC
66 GGGTTGTGGCAGCAGGATCGGCAGCACGCAAAGGGGGACCCGATCGATCCCTGGCTTGTGCATCC
* * * * * *
5091782 CATCCCTCTGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTGGACTTAGGCATACGGAATTC
131 CACCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
* * *
5091847 ATTCCCAGTCTAAACATACGGAGTTCATTCCCAATCTAAGTTCAGACCAGACCGAGGGTTGCGGC
196 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGC
* * * *
5091912 AGCACATG-T-GGCACTCTA-GCATTTGCTGGTGCCGCATTTTTCTTCGCTAGGGCACCATCGCC
261 AGCACATGCTAGG--CTC-AGGCATGTGCTGGTGCTGCATTTTTCTTCGCGA-GGCACCATC-CT
* *
5091974 AGAGCATCGTCGGAGAACCTGACCGGTGCATTGGGGTTCCGACGAT-GGGGGGGCC-GGGGGGTG
321 GGAGCATCGTCGGAGAACCTGACCGGGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTG
* * *
5092037 TGCGCGCATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
386 TGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
5092102 ACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
451 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
5092167 TAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCTAGTTTTT
516 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* *
5092232 AGCTGAATTTTTTTGTCCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAA
581 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-TTTGGGGCCAAA
* *
5092297 A-CTCCTTTCAAAAAAATTTTAAAAAATCTTGAACC-ACAAAAAGTTTCAAAAATCATGAAAAAT
645 ACCTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGA-AAAAAGTTTCAAAAATCATGAAAAAT
* **
5092360 AGAAAAGAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGTACCATTGTACAAATTTAC
709 AGAAAAG-AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
** * *
5092425 AAGGTATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTG-CTGAAACCCACTTACCACCCT
773 AAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCT
* * * *
5092489 ATTGATCCACGACTTGCGCATCTCGCCTCTCTGGCCGGCATAGTGCCCGCCCGCCTGCCC
837 ATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACATAGTGCCCG--C-CC-GCCC
* * * * *
5092549 GCTCATTTCAATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCTGACCGGACCG
1 GCTCATTTC-GTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTG
* * *
5092614 AGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCTCTGGCTTGTGCATC
65 AGGGTTGTGGCAGCAGGATCGGCAGCACGCAAAGGGGGACCCGATCGATCCCTGGCTTGTGCATC
* * *
5092679 CTACCCCTCTGACCGATTGAGCACCCGCAC
130 CCACCCCTCTGGCCGACTGAGCACCCGCAC
5092709 CGAGGGTTCC
Statistics
Matches: 1720, Mismatches: 202, Indels: 53
0.87 0.10 0.03
Matches are distributed among these distances:
890 7 0.00
891 58 0.03
892 427 0.25
893 192 0.11
894 528 0.31
895 353 0.21
896 28 0.02
897 102 0.06
898 25 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (892 bp):
GCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGA
GGGTTGTGGCAGCAGGATCGGCAGCACGCAAAGGGGGACCCGATCGATCCCTGGCTTGTGCATCC
CACCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGC
AGCACATGCTAGGCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGCGAGGCACCATCCTGGAGC
ATCGTCGGAGAACCTGACCGGGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGC
ACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAATTTGGGGCCAAAACCTCC
TTCCAAAAAAATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAAG
AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
CGGCTTGCGCATCCCGCCTCTCTGGCCGACATAGTGCCCGCCCGCCC
Found at i:5091873 original size:26 final size:26
Alignment explanation
Indices: 5091835--5091885 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5091825 TGGACTTAGG
*
5091835 CATACGGAATTCATTCCCAGTCTAAA
1 CATACGGAATTCATTCCCAATCTAAA
*
5091861 CATACGGAGTTCATTCCCAATCTAA
1 CATACGGAATTCATTCCCAATCTAA
5091886 GTTCAGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.27
Consensus pattern (26 bp):
CATACGGAATTCATTCCCAATCTAAA
Found at i:5094569 original size:884 final size:881
Alignment explanation
Indices: 5092720--5095562 Score: 3636
Period size: 884 Copynumber: 3.2 Consensus size: 881
5092710 GAGGGTTCCG
* *
5092720 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATCGAGACAC-TTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
**
5092784 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCCCGCCAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * *
5092849 AAATACAAGGATCATGTCTTCCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAAATTTAAAAAATC
131 AAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCTTTCCGAAAAAAATTTAAAAAATC
* * * * * **
5092913 TTGAACCGCGAAAAGGTTCAAAAATCATGAAAAATAGAGAACAAGTCGTCTTGAAATGAAACTTC
196 TCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* **
5092978 ACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAA
261 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-GGTAGAA
5093043 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
325 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * *
5093108 TGGCTGGCGTAGTGCCCGCCCGCCCATCCGCCCGTTCGTTTCATCGGTTGGCTTAAGCATA-TAG
390 TGGCCGACGTAGTGCCCGCCCG--C-TCCG--C--TCGTTTCATCGGTTGGCTTAGGCATACGA-
* * *
5093172 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGTAGGATCGGCAGCACATAG
447 AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGTAGGATCGGCAGCACATAG
* * * * *
5093237 AGGGGAACCCGATCGATCCTCGGCTTGCACATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGC
512 AGGGG-ACCCGGTCGATCCCCGGCTTGCACATCCTGCCCCTTTGGC-GGCTGAGCACCCGCACGC
* * * *
5093302 TCGTTTCGTGTGTTGACTTAGGCATATGGAGTTCATT-CCTAGTCTAAGCATACATAGTTCGTTC
575 TCGTTTCGTG-GTTGACTTAGGCATA-CGAGTTCATTCCCT-GTCTAAG--TATAGAGTTCATTC
* * * * *
5093366 CTAGTCAAAGATC-AAACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGG
635 CCAGTCTAAGATCGAATC-AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGG
* * *
5093430 TGCCATATTTTTCTTCATCGGGGCACCATGCTGGAGCATCGCCAGAGAACCTGACCGACGGCATT
699 TGCCACATTTTTCTTCCT-GGGGCACCATAC--G-G-ATCG-C-GAGAACCTGACCGACGGCATT
*
5093495 GGGATTCCGACGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACT
757 GGGATTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACT
*
5093560 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCTCTTAAAGA
822 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TGAGAACTCACACCCCCTTAAAGA
* *
5093621 GCATTTGAGATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
5093686 TTAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
** * *
5093751 AAATACAAGGATCATGTCTACCAAGTTTGACATCAAAAATCTTTCCGAAAAAAATTTAAAAAATC
131 AAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCTTTCCGAAAAAAATTTAAAAAATC
* * * *
5093816 TCGAACCGCAAAAAGTTTTC-AAAATCATCAAAAATAGAAAATGATTCGTCCTGCCATGAAACTT
196 TCGAACCGCAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * * *
5093880 CACGTCAAGGCTTAAGGGACCATTGTATGAATTAACAAGACATAAAAATGGCATTGGCGTGGAAA
260 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCG-GTAGA
* * *
5093945 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGGTTGTGCATCTCGTCTCT
324 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* *
5094010 CTGGCCGACGTAGTGCCCGTCCG-TCCGCTCGTTTCATCGGTTAGCTTAGGCATACGAAGTTCAT
389 CTGGCCGACGTAGTGCCCGCCCGCTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCAT
* * * * *
5094074 TCCCAGTCTAAGATCTGACCGGGCCAAGGGTTGCGGTAGTAGGATC-GCAACACACAGAGGAGGA
454 TCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGTAGGATCGGCAGCACATAGAGG-GGA
* * * *
5094138 CCCGGCCAATCCCCGGCTTGCACATCCTGCCCCTTTGGTCAGCTGAGCACCCACATC-CTCGTTT
518 CCCGGTCGATCCCCGGCTTGCACATCCTGCCCCTTTGG-CGGCTGAGCACCCGCA-CGCTCGTTT
*
5094202 CATGGCTTGACTTAGGCATACGAAGTTCATTCCCTGTCTAAGTATATGGAGTTCATTCCCAGTCT
581 CGTGG-TTGACTTAGGCATACG-AGTTCATTCCCTGTCTAAGTATA--GAGTTCATTCCCAGTCT
* * * *
5094267 AAGATCGAATCAGAGCGAGGGTTGTGGCAGCAAATGCTGGGCTCGGGCATGTGCTGGTGCCACAT
642 AAGATCGAATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACAT
* *
5094332 TTTTCTTCGCTGGGGCACCAT-C-G-TCG-GAGAACCTGACCGGCGGCATTTGGG-TTCCGGCGA
707 TTTTCTTC-CTGGGGCACCATACGGATCGCGAGAACCTGACCGACGGCA-TTGGGATTCCGACGA
* *
5094392 TCGGGGGGGCCGAGGGGGTGTGCGCACATAATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT
770 TCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT
*
5094457 GGCCCCCTATCCCTCATTAAACCTCGAGAACTCACACCCCCTTAAAGA
835 GGCCCCCTATCCCTCATCAAACCT-GAGAACTCACACCCCCTTAAAGA
* *
5094505 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAGAGTTTCTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
5094570 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGCCAAAAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * *
5094635 AAATACAAAGATCATGTCTTCCAAGTTTGGGACCAAAACTCTTTCCGAAAAAATTTTAAAAAATC
131 AAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCTTTCCGAAAAAAATTTAAAAAATC
* * * *
5094700 CCGAAACACAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
196 TCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
5094765 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGTAGAA
261 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-GGTAGAA
* *
5094830 ATATGAAGATGTGCCGAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTC
325 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * *
5094895 TAGCCGACATAGTGCCCACCCGCCCGCCCGCCTGCTCGTTTCATTGGTTGGCTTAGGCATACGGA
390 TGGCCGACGTAGTG----CCCGCCCG--CTCC-GCTCGTTTCATCGGTTGGCTTAGGCATACGAA
** * * * * * * *
5094960 GTTCATTCTGACTCTAAGAGCAGACCAGATCAAGGGTTGCGATAGCAGGATCGGTAGCACGTAGA
448 GTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGTAGGATCGGCAGCACATAGA
** * * **
5095025 TGGGGACCCGGTCGAT-CCCGGCTTGTGCATCTTG-CCCTTCTGGCCGGCCGAGCTTCCGCACGC
513 -GGGGACCCGGTCGATCCCCGGCTTGCACATCCTGCCCCTT-TGG-CGGCTGAGCACCCGCACGC
* * * *
5095088 TCGTTTTGCG-GGTTGAGTTAGGCATATCGAGTTCATTCCCAGTCTAAGCTACAGAGTTCTTTCC
575 TCG-TTT-CGTGGTTGACTTAGGCATA-CGAGTTCATTCCCTGTCTAAG-TATAGAGTTCATTCC
* * * * ** *
5095152 CAGTCTAGGATTGGATCAGATCGAGGGTTGCGAAAGCACATGCTGGGCTTAGGCATGTGCTGGTG
636 CAGTCTAAGATCGAATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTG
* * * * *
5095217 TCGCATTTTTCTTCTCTGCGGCACCATCACTGGAGCATCGCCGTGGAACCTGACCGACGGAATTG
701 CCACATTTTTCTTC-CTGGGGCACCAT-AC--G-G-ATCG-CG-AGAACCTGACCGACGGCATTG
* * * * * * *
5095282 GGTTTTCGATGATCGGGGGGGTCGGGTGGGGTGTGTGCACATGATGTG-CAGTGGGT-CTTAGTA
758 GGATTCCGACGATCGGGGGGGCCGGG-GGGGTGTGCGCACATGATGTGTGA-TGGGTGC-TGGTA
* *
5095345 CTTGGCCCTTATATTAGCCCTCTATCCCTCATCAAACCGTGAGAACTCACACCCCCTTAAAGA
820 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TGAGAACTCACACCCCCTTAAAGA
* * *
5095408 GCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACATTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
5095473 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTCGCTGAATTTTTATATGCATGCCAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
*
5095538 AAATACAAGGATCACGTCTACCAAG
131 AAATACAAGGATCATGTCTACCAAG
5095563 GCTTAAGGGA
Statistics
Matches: 1696, Mismatches: 195, Indels: 100
0.85 0.10 0.05
Matches are distributed among these distances:
883 5 0.00
884 494 0.29
885 6 0.00
887 3 0.00
888 7 0.00
889 1 0.00
891 96 0.06
892 138 0.08
893 33 0.02
894 183 0.11
895 82 0.05
896 1 0.00
897 2 0.00
899 7 0.00
901 62 0.04
902 140 0.08
903 432 0.25
904 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (881 bp):
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCTTTCCGAAAAAAATTTAAAAAATC
TCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCGGTAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGACGTAGTGCCCGCCCGCTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTC
CCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGTAGGATCGGCAGCACATAGAGGGGACCC
GGTCGATCCCCGGCTTGCACATCCTGCCCCTTTGGCGGCTGAGCACCCGCACGCTCGTTTCGTGG
TTGACTTAGGCATACGAGTTCATTCCCTGTCTAAGTATAGAGTTCATTCCCAGTCTAAGATCGAA
TCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCC
TGGGGCACCATACGGATCGCGAGAACCTGACCGACGGCATTGGGATTCCGACGATCGGGGGGGCC
GGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTGAGAACTCACACCCCCTTAAAGA
Found at i:5095929 original size:26 final size:26
Alignment explanation
Indices: 5095900--5095951 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
5095890 GTTGACTTAG
* **
5095900 GCATACGGAGTTTATTTGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5095926 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5095952 TATCAGACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5096341 original size:789 final size:790
Alignment explanation
Indices: 5094770--5096351 Score: 2146
Period size: 790 Copynumber: 2.0 Consensus size: 790
5094760 ACTTCACGTG
* * * * *
5094770 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGTAGAAATATG
1 AAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGCCATTGGCACGCAAAAATATG
5094835 AAGATGTGCCGAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTAGCC
66 AAGATGTGCCGAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTAGCC
* * * *
5094900 GACATAGTGCCCACCCGCCCGCCCGCCTGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCA
131 GACATACTGCCCACCCGCCCACCCGCCTACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * * *
5094965 TTCTGACTCTAAGAGCAGACCAGATCAAGGGTTGCGATAGCAGGATCGGTAGCACGTAGATGGGG
196 TCCTCACTCTAAGAGCAGACCAGATCAAGGGTTACGATAGCAGGATCGATAGCACGCAAAGGGGG
* ** ** * * *
5095030 ACCCGGTCGATCCCGGCTTGTGCATCTTGCCCTTCTGGCCGGCCGAGCTTCCGCACGCTCGTTTT
261 ACCCGGTCGATCCCGACTTACGCATCCCGCCCCTCTGGCCGGCCGAGCTACCGCACGCTCGTTTC
* * * *
5095095 GCGGGTTGAGTTAGGCATATCGAGTTCATTCCCAGTCTAAGCTACAGAGTTCTTTCCCAGTCTAG
326 ACGGGTTGACTTAGGCATATCGAGTTCATTCCCAGTCTAAGCTACAGAGTTCATTCCCAGTCTAA
** * * *
5095160 GATTGGATCAGATCGAGGGTTGCGAAAGCACATGCTGGGCTTAGGCATGTGCTGGTGTCGCATTT
391 GATCAGACCAGACCGAGGGTTGCGAAAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGCATTT
* * * * *
5095225 TTCTTCTCTGCGGCACCATCACTGGAGCATCGCCGTGGAACCTGACCGACGGAATTGGGTTTTCG
456 TTCTTCCCTGCGGCACCATCACTGGAGCATCGCCGTGGAACCTAACCGACAGAATTGGGGTTCCG
* * * *
5095290 ATGATCGGGGGGGTCGGGTGGGGTGTGTGCACATGATGTGCAGTGGGTCTTAGTACTTGGCCCTT
521 ACGATCGGGGGGGTCCGGTGGGGTGTGCGCACATAATGTGCAGTGGGTCTTAGTACTTGGCCCTT
*
5095355 ATATTAGCCCTCTATCCCTCATCAAACCGTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
586 ATATTAGCCCCCTATCCCTCATCAAACCGTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
5095420 TTACAAGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCAC
651 TTACAAGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTGTTTCAAATGGTCAC
*
5095485 AAAATCTTGTACACTTCGAGTTTTTCGCTGAATTTTTATATGCATGCCAACAAAAATACAAGGAT
716 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTATATGCATGCCAACAAAAATACAAGGAT
5095550 CACGTCTACC
781 CACGTCTACC
5095560 AAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGCCATTGGCACGCAAAAATATG
1 AAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGCCATTGGCACGCAAAAATATG
* * * * *
5095625 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCTCGTCTCTCTGGCC
66 AAGATGTGCCGAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTAGCC
* * * * * *
5095690 GACGTACTGCCCGCCCGCCCACCCGCCTACTTGTTTCGTCGGTTGGCTTAGGCATATGGTGTTCA
131 GACATACTGCCCACCCGCCCACCCGCCTACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
* * ** * *
5095755 TCCTCAGTCTAAGATC-GAATTAGA-CTGAGGGTTACGGTAGCAGGATCGATAGCACGCAAAGGG
196 TCCTCACTCTAAGAGCAG-ACCAGATC-AAGGGTTACGATAGCAGGATCGATAGCACGCAAAGGG
* * *
5095818 GGACCCGGTCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGC-ACGTGCACGGTCG
259 GGACCCGGTCGAT-CCCGACTTACGCATCCCGCCCCTCTGGCCGGCCGAGCTAC-CGCACGCTCG
* * ** *
5095882 TTTCATGGGTTGACTTAGGCATA-CGGAGTTTATTTGCAGTCTAAGCATACGGAGTTCATTCCCA
322 TTTCACGGGTTGACTTAGGCATATC-GAGTTCATTCCCAGTCTAAGC-TACAGAGTTCATTCCCA
* * * * *
5095946 GTCTAATATCAGACCGGACCGAGGGTTGCGACAGCACATGCTTGG-TCGGGCATGTGCTGGTGTC
385 GTCTAAGATCAGACCAGACCGAGGGTTGCGAAAGCACATGCTGGGCTCAGGCATGTGCTGGTGTC
* * * * * *
5096010 GTATTTTTCTTCGCCTG-GGCACCATC-GTCGGAGCATTGTCG-GAGAACCTAACCGGCAGCATT
450 GCATTTTTCTTC-CCTGCGGCACCATCACT-GGAGCATCGCCGTG-GAACCTAACCGACAGAATT
*
5096072 GGGGTTCCGACGATCGGGGGGG-CCGG-GGGGTGTGCGCACATAATGTGC-GATGGGTGC-TGGT
512 GGGGTTCCGACGATCGGGGGGGTCCGGTGGGGTGTGCGCACATAATGTGCAG-TGGGT-CTTAGT
*
5096133 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGA
575 ACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCGT-GAGAACTCACACCCCCTTAAAGA
*
5096197 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTGTT
639 GCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTGTT
* * * * *
5096262 TCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAGAA
704 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTATATGCATGCCAACAA
*
5096327 AAGTACAAGGATCACGTCTACC
769 AAATACAAGGATCACGTCTACC
5096349 AAG
1 AAG
5096352 TTTGGGCCCA
Statistics
Matches: 689, Mismatches: 91, Indels: 25
0.86 0.11 0.03
Matches are distributed among these distances:
788 2 0.00
789 235 0.34
790 242 0.35
791 156 0.23
792 54 0.08
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.26
Consensus pattern (790 bp):
AAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGCCATTGGCACGCAAAAATATG
AAGATGTGCCGAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTAGCC
GACATACTGCCCACCCGCCCACCCGCCTACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
TCCTCACTCTAAGAGCAGACCAGATCAAGGGTTACGATAGCAGGATCGATAGCACGCAAAGGGGG
ACCCGGTCGATCCCGACTTACGCATCCCGCCCCTCTGGCCGGCCGAGCTACCGCACGCTCGTTTC
ACGGGTTGACTTAGGCATATCGAGTTCATTCCCAGTCTAAGCTACAGAGTTCATTCCCAGTCTAA
GATCAGACCAGACCGAGGGTTGCGAAAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGCATTT
TTCTTCCCTGCGGCACCATCACTGGAGCATCGCCGTGGAACCTAACCGACAGAATTGGGGTTCCG
ACGATCGGGGGGGTCCGGTGGGGTGTGCGCACATAATGTGCAGTGGGTCTTAGTACTTGGCCCTT
ATATTAGCCCCCTATCCCTCATCAAACCGTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
TTACAAGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTGTTTCAAATGGTCAC
AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTATATGCATGCCAACAAAAATACAAGGAT
CACGTCTACC
Found at i:5096839 original size:26 final size:26
Alignment explanation
Indices: 5096803--5096855 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5096793 GTTGACTTAG
* *
5096803 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
*
5096829 GCATACGGAGTTCATGCCTAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
5096855 G
1 G
5096856 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATGCCCAGTCTAA
Found at i:5097817 original size:894 final size:893
Alignment explanation
Indices: 5095560--5102823 Score: 8602
Period size: 891 Copynumber: 8.2 Consensus size: 893
5095550 CACGTCTACC
* * *
5095560 AAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGCCATTGGCACGCAAAAATATG
1 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* *
5095625 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCTCGTCTCTCTGGCC
66 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * *
5095690 GACGTACTGCCCGCCCGCCCACCCGCCTACTTGTTTCGTCGGTTGGCTTAGGCATATGGTGTTCA
131 GGCGTAGTGCCCGCCCG----CCCG-CT-C--GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
** * * ** * *
5095755 -TCCTCAGTCTAAGATC-GAATTAGACTGAGGGTTACGGTAGCAGGATCGATAGCACGCAAAGGG
188 TTCC-CAGTCTAAGATCAG-ACCAGACCGAAGGTTACGACAGCAGGATCGACAGCACGCAGAGGG
* * * * ** *
5095818 GGACCCGGTCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCACGTGCACGGTCGT
251 GGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* * **
5095883 TTCATGGGTTGACTTAGGCATACGGAGTTTATTTGCAGTCTAAGCATACGGAGTTCATTCCCAGT
316 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * ** * * *
5095948 CTAATATCAGACCGGACCGAGGGTTGCGACAGCACATGCTTGG-TCGGGCATGTGCTGGTGTCGT
381 CTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * * *
5096012 ATTTTTCTTCGCCTGGGCACCATCGTCGGAGCATTGTCGGAGAACCTAACCGGCAGCATTGGGGT
446 ATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGT
*
5096077 TCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCC
511 TCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
5096142 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
576 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
5096207 TTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTGTTTCAAATGGTC
641 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
5096272 ACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAGAAAAGTACAAGG
706 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGG
* * * **
5096337 ATCACGTCTACCAAGTTTGGGCCCAAAACTCCTT-TCAAAGAAGTTTTAAAAAATCCCGAACCCC
770 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA-AAATTTTAAAAAATCCCGAACCGT
**
5096401 AAAAAGTTTCAAAAATCTTAAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
834 AAAAAGTTTCAAAAATC--ATGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * * * * *
5096463 ATGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAAGGGCATTGGCAAGTAGAACTATG
1 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* * * * *
5096528 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACACATCCCGTCTCTCTTGTC
66 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
*
5096593 GGCATAGTGCACGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
131 GGCGTAGT----GCCCGCCCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * ** * * **
5096658 TTCGCAGTCTAAGATCAGACCAGACTGAAGGTTACGGTAGCAGGATCGACAACATGCAGATCGGG
188 TTCCCAGTCTAAGATCAGACCAGACCGAAGGTTACGACAGCAGGATCGACAGCACGCAGAGGGGG
** * * * ** *
5096723 ACCTGGTCGTTCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGTTGAGTACCCGCACGCTCATTT
253 ACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
** * * *
5096788 AATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATGCCTAGTCT
318 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
** * * ** * * *
5096853 AAGATCGGATTGGACCGAGGGTTGCGGCAGGACATGCTGGGCTCATGCAAGTACTGGTGCCACAT
383 AAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* ** * * * * *
5096918 TTTTCTTCACCGGGGCACCATCGTAAGAGCATAGCCGGAGAACCTAATCGGCGACATTAGGGTTC
448 TTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTC
* *
5096983 CGACAATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCACT
513 CGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
*
5097048 TATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
577 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
5097113 TTTTCAGGTTTGCTGCCAGTTGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
642 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
5097178 CAAACTCTTGTACACTTCGAGTTTGTAGCTGAATTTTTTTGTGCATGCCAATAAAATACAAGGAT
707 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGAT
**
5097243 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACTATAAA
772 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAA
* *
5097308 AAGTTTCGAAAATCATGAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACGTG
837 AAGTTTCAAAAATCATGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
5097365 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAGAAA-GGCATTGGCACACAGAAATAA
1 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA-AAATGGCATTGGCACGCAGAAATAT
* * *
5097429 GAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCAGGT
65 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * *
5097494 CGGCGTAGTGCCCGCTCGCCCGCTCATTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAG
130 CGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * ** ** *
5097559 TCTAAGATTAGACCAGACCGAGGGTTGTGACAGCAGGATCGGTAGCACGTAGAGGGGGACCCAGT
195 TCTAAGATCAGACCAGACCGAAGGTTACGACAGCAGGATCGACAGCACGCAGAGGGGGACCCAGT
* * * * * *
5097624 CGATCCTCGACTTACGAATCCCGCCCCTCTGGCCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGT
260 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
5097689 TGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCG
325 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * *
5097754 GACCAGACCGAGGGTTGTGGTGGCACATCCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT
390 GACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * *
5097819 CACCGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
455 CGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
*
5097884 CGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
520 CGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * * *
5097949 CTCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCGTTTCAGATTTTACAGG
585 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* ** *
5098014 TTTGCTGCTAGTAGCCATTAAAGCATCT-AACATGGGGACATTTTTTTCAAATGGTCACAAAATC
650 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAA-ATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
5098078 TTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAGCAAAAATACAATGATCACGTC
714 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-AAAAAATACAAGGATCACGTC
* * ** * *
5098143 TACCAAGGTTGGGGCCAGAACTCCTTCCAAAAAAATTTTGAAAAATCCCGAACTGTAAAAAGTTT
778 TACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
** ** *
5098208 TGAAAGGCATGAAAAATAGAAAACGAGTCGTCTTGCCATGGAACTTCACGTG
843 CAAAAATCATG-AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
5098260 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATAT
1 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-CGCAGAAATAT
* * * * *
5098325 GAAGATGTGCCTAAACTCACCTACCACCTTATTGATCCACGGCATGCGCATCCCGCCTCTCTGGC
65 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * * * * * **
5098390 CAACGCAGTGGCCGCCCGCCCGCCCGCCCATTTCGTCAGTTGGCTTAGTCATATAGAGTTCATTC
130 C--GGC-GTAG-TGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * * * * *
5098455 CCAGCCTAAGATCAGATCAGATCGAGGGTTATGGCAGTAGGATCGGCAGCACACAGAGGGGGACT
191 CCAGTCTAAGATCAGACCAGACCGAAGGTTACGACAGCAGGATCGACAGCACGCAGAGGGGGACC
* * * * * * * * *
5098520 CAGTCGATCCCCGGTTTACGCATCCCGCACCACTGGCCAGATGAGCGCCCGTACGCTAGTTTCAT
256 CAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
* *
5098585 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAG
321 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * * * *
5098650 ATCGGACCGAACCGAGGGTTCCAGTAGAACATTCTGGGCCCGGCCATGTGCTGGAGCCACATTTT
386 ATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * ** * * *
5098715 TCTTTGCCTGGGTGCCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATT-GGATTACCA
451 TCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTT-CCG
* * * *
5098779 ACGATC-GGGGCGCCGAGGGGTGAGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTAT
515 ACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * * *
5098843 ATTGGCCCCCTATCCTTCATCAAACCTTGAGAACTTACACCCTCTTAAAGAGCATTTGAGATTTT
580 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * * * *
5098908 ACAGGTTTGCTACCAGTAGCCACTAAAATGTCTAAAATGGGGACATTTTTTTCAAATGGTCACAA
645 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
5098973 AATCTTGTACACTTTGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
710 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAATACAAGGATCA
* * * *
5099038 CGTCTACCAAGTTTGGGGCCAAAACTGCTTCCGAAAAAAGTTTAAAAAATCCCGAACCGTAAACA
774 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
** * * *
5099103 GTTTTGAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTG
839 GTTTCAAAAATCATG-AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * *
5099159 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATCGCATTGGCATGTAGAAATATG
1 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* * *
5099224 AAGATGTGCCTAAACCTACCTACCATCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCC
66 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* *
5099289 GACGTAGTGCCCGTCGGCTTGCCCGACCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
131 GGCGTAGTG--C--C--C--GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * *
5099354 TTCCTAGTCTAAGATCAGACCAGACTGAAAGTTGC-AGCAGCAGAATCGACAGCATGCAGAGGGG
188 TTCCCAGTCTAAGATCAGACCAGACCGAAGGTTACGA-CAGCAGGATCGACAGCACGCAGAGGGG
* * * *
5099418 GACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGTCCGGCTGAGCGCCCGCAGGCTCGAT
252 GACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG-T
* *
5099483 TT-GTGGGTTGACTTAAGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
316 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
*
5099547 CTAAGATC-GACTGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
381 CTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * **
5099611 ATTTTTCTTCGTCGGGGCACCATCGTCGGAG-A---AC--TTAA-CT-A---GCGGCATTGGGGT
446 ATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGT
** * *
5099665 TCCGGTGATCGGGGGGGTCGGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGG-C
511 TCCGACGATCGGGGGGGCCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * *
5099729 CTTATATTGGCCCGCTATACCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAG
575 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * * *
5099794 ATTTTACAGGTTTGCTACAAGTAGCCATCAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGCT
640 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * * * *
5099858 CACAAAATCTTGGACACTTCAATTTTTTAGCT-AAGTTTTTTTTGTGCACGCTAATAAAAATACA
705 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA--TTTTTTTGTGCATGCCAA-AAAAATACA
* * * * *
5099922 AGGATCATGTCTACGAAGTTTGGGGTCAAAACTCCTTCTGAAAATATTTTAAAAAATCCCAAACC
767 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACC
*
5099987 GTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
832 GTAAAAAGTTTCAAAAATCAT-GAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * *
5100050 AAGACTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCACGTAGAAATATG
1 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* * * *
5100115 AAGATGTGACTAAGCCCACCTACCACTCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCC
66 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * *
5100180 GGCGTAGTGCCCGTCCGCCTGCCCGTTCGCTCGTTTCATCAGTTGGCCTAGGCATACGTAGTTCA
131 GGCGTAGTGCCCG--C-CC-G-CC---CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
** * * *
5100245 TTCCCAGTCTAAGATTGGATCAGACCGAGGGTTACGACAGCAAGATCGACAGCACGCAGAGGGGG
188 TTCCCAGTCTAAGATCAGACCAGACCGAAGGTTACGACAGCAGGATCGACAGCACGCAGAGGGGG
* * * * *
5100310 ACCC-GACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCACCCGCATGCTCGTT
253 ACCCAG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
**
5100374 TCGTGGGTTGACTTAGGCATACGGAGTTTGTTCCCAG--T---CA-A---AG---------A-TC
317 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * * *
5100420 --AGAT-----CGGATCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTA
382 TAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * ** *
5100478 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACTTGACCGATGGCAATGGGGTT
447 TTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTT
* *
5100543 CTGGCGATCGGGGGGGCCGGGTGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
512 CCGACGATCGGGGGGGCCGGG-G-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
5100608 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAATAGCATTTGAG
575 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
** * * *
5100673 ATTTTACAGGTTTGCAACTAGTAGCCATTAAAGTGTCTGAAAAGGGGACATTTTTTTCAAATGGT
640 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
*
5100738 CACAAAATCTTGTACACTTCGAGATTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
705 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAATACAAG
* * * * *
5100803 GATCACATCTGCCAAGTTTGGGGCCAAAAATCGTT-TCGAAAAAATTTTAAAAAATCTCGAACCG
769 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCCCGAACCG
* * *
5100867 CAAAAATTTTCAAAAATCGTGACAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
833 TAAAAAGTTTCAAAAATCATGA-AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * * * *
5100929 AAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAAAGGGCATTAGCATGCAAAAATAT
1 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCACGCAGAAATAT
* * * * *
5100994 TAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTCGTGCATCCCGTCTCTCTGGC
65 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * * *
5101059 TGGCATAGTGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGTATACGGAGTTCATTCCCAG
130 CGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* ** * * ** *
5101124 TCTAAGATCAGACTAGACTAAAGGTTGC-AGCAGCAGGATCGGCAGCACGCAGAAAGGGACCCAA
195 TCTAAGATCAGACCAGACCGAAGGTTACGA-CAGCAGGATCGACAGCACGCAGAGGGGGACCCAG
* * * * * *
5101188 CCGATCCTCAGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
259 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * * *
5101253 TTGACTTAGGCATACGGAGTTTATTCCCAGTCTAGGCACACGGAGTTCATTCCTAGTCTAAGATT
324 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * *
5101318 GGACTGGACCGAGGGTTGTGGCAGCACATG-T--GCT---G---GTGC---T---GCATTTTTCT
389 GGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * * * *
5101368 TCGCCGGGGCACCATCGTCGGAGTATCGCCGTAGAACTTGATCAGCGACATTGGGGTTCCGGCGA
454 TCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
* *
5101433 TCGGGGGGGTCGGGCGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATAT
519 TCGGGGGGG-CCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
5101498 TAGCCCGCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTAC
582 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
5101563 AGGTTTGGTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAA
647 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* *
5101628 TCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACG
712 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAATACAAGGATCACG
* * * *
5101693 TCTACCAAGTTTGGGACCAAAACCCCTTCTGAAAAAATTTTAAAAAATCCTGAATC--ACAAAAG
776 TCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTA-AAAAG
* *
5101756 TTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGACACTTCACGTG
840 TTTCAAAAATCATG-AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
5101811 AAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
1 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
*
5101876 AAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-C
66 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* ** * * *
5101940 -G-ATAGTGCCCTTCCGCCCGCCTGCCGCCGTTCGTCCGTT-GCTTA-GCTTACGGAGTTCATTC
131 GGCGTAGTGCCCGCCCGCCCG-CT--CG--TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * * * * *
5102001 CCAGTCTCAGATCAGACCA-AACTAAGGTTGCCATAGTA-GATCTG-CAGTACGCAGA--AGGTC
191 CCAGTCTAAGATCAGACCAGACCGAAGGTTACGACAGCAGGATC-GACAGCACGCAGAGGGGGAC
* ** * * * * *
5102061 CGA-TCGATCCCCGGCTTGCATATCCCGTCTCTCTGGCC-GTTGAGCGCCTGCACGCTTGTTTCG
255 CCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
5102124 T-GGTTGACTTA-GCA-ACGGAG----TT--CA---T-----T-C------CA-T-----TCTAA
320 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
5102159 -ATC-GACCAGACCGAGGG-TGCAGCAGCACATGCTAGGCTCAGGCATTTGCTGGTGCCGTATTT
385 GATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * * *
5102221 TTCTTCGTC-GGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGACGGCATT-GGGTTCCA
450 TTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
**
5102284 ACGAT--TTGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT-GTAC-TGGCCCTTAT
515 ACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
5102345 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA-TTGAGATTTT
580 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
5102409 ACAGTTTTGCTGCCGAGTAAGCCATTAAAGTGTCTAAAAT-GGGACACTTTTTTTCAAATGGTCA
645 ACAGGTTTGCTGCC-AGT-AGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCA
**
5102473 CAAAATC-TGTTACACTTCGA--TTTTAGCTGAA-TTTTTTGTGCACACCAAAAAAAGTTACAAG
707 CAAAATCTTG-TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA--TACAAG
* * * * * *
5102534 GATCACGTCTACCAAGTTTGGGGCCAAAAATCGTTCCGAAAAAATTTTAAAAACTCTCAAACCGT
769 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGT
* * * *
5102599 AAAAAGGTTCGAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
834 AAAAAGTTTCAAAAATCAT-GAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * * * *
5102660 AAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAAGGGAATTCGCA-ACAGAAATATG
1 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* * *
5102724 AAGATGTGGCTAAACCCACATACCACCCTATCGATCCAC-GCTTGCGCATCCCGTCTCCTCTGGT
66 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT-CTCTGGC
*
5102788 TGGCGTAGTGCCCG--C-CCCGCTCGTTTCGTCGGTTGG
130 CGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
5102824 TAGCATATTG
Statistics
Matches: 5513, Mismatches: 710, Indels: 335
0.84 0.11 0.05
Matches are distributed among these distances:
842 12 0.00
843 22 0.00
844 3 0.00
845 10 0.00
846 7 0.00
847 31 0.01
848 147 0.03
849 176 0.03
850 60 0.01
851 44 0.01
852 3 0.00
853 4 0.00
854 1 0.00
855 11 0.00
856 36 0.01
857 14 0.00
863 1 0.00
866 80 0.01
867 1 0.00
868 2 0.00
870 5 0.00
871 1 0.00
872 183 0.03
873 5 0.00
874 12 0.00
875 25 0.00
876 28 0.01
877 38 0.01
878 59 0.01
879 291 0.05
880 145 0.03
881 121 0.02
882 96 0.02
883 354 0.06
884 5 0.00
885 4 0.00
886 5 0.00
887 2 0.00
888 1 0.00
889 8 0.00
890 60 0.01
891 551 0.10
892 40 0.01
893 214 0.04
894 415 0.08
895 95 0.02
896 67 0.01
897 2 0.00
898 103 0.02
899 390 0.07
900 328 0.06
901 72 0.01
902 361 0.07
903 352 0.06
904 169 0.03
905 222 0.04
906 2 0.00
907 17 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
GGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
CTAAGATCAGACCAGACCGAAGGTTACGACAGCAGGATCGACAGCACGCAGAGGGGGACCCAGTC
GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
ACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
GCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTAC
CAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
AAATCATGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
Found at i:5098627 original size:26 final size:26
Alignment explanation
Indices: 5098597--5098649 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5098587 GTTGACTTAG
* *
5098597 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
5098623 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
5098649 G
1 G
5098650 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:5099536 original size:26 final size:26
Alignment explanation
Indices: 5099496--5099551 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
5099486 TGGGTTGACT
5099496 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
*
5099522 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
5099548 TAAG
1 TAAG
5099552 ATCGACTGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:5101288 original size:26 final size:26
Alignment explanation
Indices: 5101259--5101312 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
5101249 TGGGTTGACT
* *
5101259 TAGGCATACGGAGTTTATTCCCAGTC
1 TAGGCACACGGAGTTCATTCCCAGTC
*
5101285 TAGGCACACGGAGTTCATTCCTAGTC
1 TAGGCACACGGAGTTCATTCCCAGTC
5101311 TA
1 TA
5101313 AGATTGGACT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TAGGCACACGGAGTTCATTCCCAGTC
Found at i:5104578 original size:26 final size:26
Alignment explanation
Indices: 5104549--5104601 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5104539 GTTGACTTGG
5104549 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
*
5104575 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
5104601 G
1 G
5104602 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:5105494 original size:26 final size:26
Alignment explanation
Indices: 5105458--5105510 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5105448 GTTGACTTAG
5105458 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
5105484 GCATTCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5105510 G
1 G
5105511 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5105547 original size:909 final size:899
Alignment explanation
Indices: 5103680--5108593 Score: 6328
Period size: 877 Copynumber: 5.5 Consensus size: 899
5103670 GTTGACTTAG
* **
5103680 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGATGGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAGG
* ** * ** *
5103745 CTCAGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCG-CCGAGA
* * * * *
5103810 ACCTGACCGACGGCATTGGGGTTCCGGTGTTCGGGGGGGTCGGGGGGGTGTGTGCACATGATGTG
130 ACCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGG-CCGGGGGGTGTGCGCACATGATGTG
* * * *
5103875 TGATGGATGCTGGTACTTGGCCCTTCTATTGGCCCCCTTATCCCTCATCAAATCTTGAGAACTCA
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC-TATCCCTCATCAAACCTTGAGAACTCA
* * *
5103940 CACCCCGTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
5104005 TGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTCTTTT
323 TGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *** * *
5104070 GTGCATGCCAAGAAAAATACAAGGATCACATCTACCAACTTTGGGTATAAAAATCCTTTCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
5104135 GATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTCAAAAATCGTG-AAAATAGAAAACGAGTCATC
453 AATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTC
* *
5104198 TTGCCATGAAACTTCACGTGAACGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-G
* *
5104263 CATTGGCACATAG-AATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCACGGCTTG
581 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
5104327 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-C-CCACCCG-CTG-T--TTTCGTCAGTTGGC
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGACGCCGCCCGCCCGCTCATTTCGTCGGTTGGC
* ** * ** *
5104386 TTAGGCATACGGAGTTCATTCCCAGTCTAAAATTGGACCAGACCGAGGGTTACCACAGCAGGATT
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
* * * * * * * *
5104451 GGCAGCACGTAAAGGGGGACCCGGTCAATCCCCGACTTTCGCATCCGGCCCCTCTAGTCGGCTGA
776 GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * * * *
5104516 ACGCCCGCATGGTCTTTTTGTGGGTTGACTTGGGCATACGGAGTTCATACCCAGTCTAA
841 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
5104575 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAGG
* * *
5104640 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGTTGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCG-AGA
* * * *
5104705 ACCTGACCGGTGGCATTGGGGTTCCAGCGATCGGGGGGGCCGTTGGGGTGTTCGCACATGATGTG
130 ACCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTG
* * * *
5104770 CGATGGGTGTTGGTACTTGGCACTTATATTGGCCCCCTGTCCCTTATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
*
5104835 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5104900 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
324 GGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
5104965 TGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAAATTCTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
5105030 ATTTAAAAAAATCCCGAACCGCATAATGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTT
* *
5105095 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTTTCAAGCCATAAAAATAGC
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA-TTTACAAGCCATAAAAAT-GC
* *
5105160 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCATGGCTTGC
582 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * * * *
5105225 TTATCCCGTCTCTCTGGCCGGTGCAGTTTCCGCCCGACTGTCCGCCCGCCCGCTCGTTCCGTCGG
647 GCATCCCGTCTCTCTGGCCGGCGTAG--T--GCCCGAC-G-CCGCCCGCCCGCTCATTTCGTCGG
** * *
5105290 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCACACCGAGGGTTGGGGCAGCA
706 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
* * * *
5105355 GGATCGGTAGCACGCAGAGAGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCA
771 GGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCG
* *
5105420 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
836 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
5105484 GCATTCGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAGG
* *
5105549 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCACCGGACCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCC-GAGA
* * * *
5105614 ACCTGACCGATGGCGTTGGGGTTACGGCGATCGGGGGGCCCGGTGGGGGTGTGTGCACATGATGT
130 ACCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCC-G-GGGGGTGTGCGCACATGATGT
5105679 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* *
5105744 CACCCCCTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
5105809 TGGGG-CACTTTTTCCAAATGATCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTT
323 TGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
5105873 GTGCATGCCAACAACAATACAAGGATGA-TGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
388 GTGCATGCCAACAAAAATACAAGGATCACT-TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
5105937 AAATTTTAAAAAATCCTGAACCATAAAATGTTTCAAAAATTGTGGAAAATAAAAAATGAGTCGTC
452 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTC
5106002 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGC
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGC
* * * * *
5106067 ATTGGCACGCAGCAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCTATCCACGGCATGC
582 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
5106132 GCATCCCGCCTCTCTGGCCAGCGTAGTGCCCGCCCGTCCGCTCGCCTGCTCATTTCGTCAGTTGG
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-ACG-CCGCCCGCCCGCTCATTTCGTCGGTTGG
* * *
5106197 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCTGGAT
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT
* * * * * *
5106262 CGGCAGCACGCATAGGGGGACCCGAAT-GATCCCCGGCTTACGCATCTCACCCCTCTGGCCCGCT
775 CGGCAGCACGCAGAGGGGGACCCG-ATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCT
* * ** * *
5106326 GAGTGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACGGGGTTCATTCCTAGTCTAA
839 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
5106387 GCATAAGGAGTTCTTTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAGG
* * *
5106452 CTCAGGCATGTGCTAGTGCCGCATTTTTCTTCATCGAGGCACC-T-------G--T--------A
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGAGAA
* **
5106499 --TGA-C-A--GCATTGGGGCTCCTACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
131 CCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGC
5106558 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
*
5106623 CCCCCTTGAAA-AGCATTTGAGATTTTACAGGTTTGCTGCCAAT-GCCATTAAAGTGTCTGAAAT
260 CCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
5106686 GGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
5106751 TGCATGCCACCAAAAATACTAGGATCA-TGTCTACCAAGTTTTGGGCCAAAACTCCTTCCAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACT-TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* ** *
5106815 AATTTTAAAAAATCCTGAACCCTAAAAAGTTTCAAAAATAATGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCT
*
5106880 TGCGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCA
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCA
* * * * *
5106945 CTGGCACGCAGCAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCAATCCACGGCTTGCG
583 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * * * *
5107010 CATCATGCCTCTCTGGGCGGCGTAGTGCCCGTCCAC-CCGCCCGCCCGCTCATTTTGTCGTTTGG
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCG---ACGCCGCCCGCCCGCTCATTTCGTCGGTTGG
* * * * * * * * * * *
5107074 CTTAGTCATACAGAGTTCATTCCCAGTCTATGACCAGACCAGACCAAAGGTCGTGGTAGTAGGTT
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT
* * *
5107139 CGGCAGCTCACAGAGGGGTACCC-AGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCT
775 CGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCT
* * **
5107203 GAGCGCCCGCACGTTAATTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAA
839 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
5107264 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAAACCGAAGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAGG
* * ** * *
5107329 CTCGGGAATGTGCTGGTGTCATATTTTTCTTCACCTGGGCACCAT---C--A-C--CG--GAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGAGAA
* *** * * * * *
5107384 CCTGATCGGCAGTATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCACGCATGATGTGCG
131 CCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * * *
5107449 ATGGGTACTGGTACTTGGCCCTTATATTGG-CTCCTATTCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
5107513 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
5107578 GGACACTTTTTTCAAATGATCAC-AAGTCTTGTACACTTCAAGTTTTTAGCTGAATTTCTTTTTG
326 GGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TT-TTTTTG
* * * *
5107642 TGCATGCAAAAAAAAAGACAAGGATCACTTCTACCAAGTTTGGGGACAAAACTCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
5107707 ATTTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTT
* * * * *
5107772 GCCACGAAACTTCACGTCAAGGCTCAAGGGACTATTGTATGAATTTACAAGCCAAAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-GCA
* * *
5107837 TTGGCACATAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTG
583 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * * * * *
5107902 CATCCCGTCTCTCTGGCCGATGTAATGCCCGCCTGCCTGTCTGCCCGCTCATTTCATCGGTTGGC
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGAC-GCC-GCCCGCCCGCTCATTTCGTCGGTTGGC
* *
5107967 TTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCCGACCGAGGGTTGCGGCAGCAAGG-T
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGC-AGGAT
* * ** * ** * * *
5108031 CGGTAGCACGCAGAGGGGGACCCGGTCGATCCTTGACTTGCACATCCCAACCTTCTAGCCGGTTG
775 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
5108096 AACGGCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** ** * **
5108156 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACTGAGGGTTGCGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAGG
* * * * * **
5108221 CTC-GGCTATGTGCTGGTGTCGCATTTTTCTTTA-CTGAGGTACCATCATCGGAGCATCATCGTA
66 CTCGGGC-ATGTGCTGGTGCCGCATTTTTCTTCATC-GGGGCACCATCACCGGAGCATCGCCG-A
* * * *
5108284 GAACCTGACTGATGGCATTGGGGTTCCGGTGATCAGGGGGGTCGGGGGGTGTGCGCACATGATGT
128 GAACCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
*
5108349 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* * * **
5108414 CACCCCTTTAAAGGGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCAAGAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
5108479 TGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC--G-----A---G--TTTTTTT
323 TGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* **
5108532 GTGCATGCCATCAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTTCCGA
388 GTGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
5108594 GGCAAATGGT
Statistics
Matches: 3521, Mismatches: 427, Indels: 146
0.86 0.10 0.04
Matches are distributed among these distances:
875 1 0.00
876 24 0.01
877 714 0.20
878 29 0.01
879 2 0.00
880 1 0.00
881 1 0.00
882 3 0.00
884 1 0.00
885 1 0.00
887 3 0.00
888 4 0.00
889 97 0.03
890 97 0.03
891 266 0.08
892 348 0.10
893 4 0.00
894 241 0.07
895 260 0.07
896 30 0.01
897 72 0.02
898 2 0.00
899 1 0.00
900 1 0.00
901 5 0.00
902 3 0.00
903 380 0.11
904 116 0.03
905 22 0.01
906 2 0.00
907 81 0.02
908 18 0.01
909 542 0.15
910 149 0.04
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGAGAA
CCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCATTG
GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGACGCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
CACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5106390 original size:26 final size:26
Alignment explanation
Indices: 5106361--5106413 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5106351 GTTGACTTAG
* * *
5106361 GCATACGGGGTTCATTCCTAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
*
5106387 GCATAAGGAGTTCTTTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
5106413 G
1 G
5106414 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:5108166 original size:26 final size:26
Alignment explanation
Indices: 5108130--5108182 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5108120 GTTGACTTAG
5108130 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5108156 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5108182 G
1 G
5108183 ATCAAACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5109158 original size:26 final size:26
Alignment explanation
Indices: 5109122--5109174 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5109112 GTTGACTTAG
*
5109122 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5109148 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5109174 G
1 G
5109175 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5110531 original size:720 final size:718
Alignment explanation
Indices: 5109148--5110641 Score: 2208
Period size: 720 Copynumber: 2.1 Consensus size: 718
5109138 CCCAGTCTAA
* * ** * * **
5109148 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAGCAGCACATGCCAGG
* *
5109213 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATTGACGGAGCATCACCGGAGA
66 CTCGGGCATGGGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATTGACGAAGCATCACCGGAGA
* * *
5109278 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGCTGTGTGCACATGATGTG
131 ACCTGACCGACGGCATTGGGCTTCCGACGATCGGGGGGGCCAGGGGGCTGTGCGCACATGATGTG
* * * *
5109343 CGATGAGTGCTGGTACTTAGCACTTCTATTGTCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
196 CAATGAGTGCTGGTACTTAGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
5109408 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCAGTAAAGTGTTTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCTAAAAT
* * * *
5109473 GGGGGCACTTTTTTCAAATGGTCACAAAACTTGTACTCTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGGACACTTTTTTCAAAAGGTCACAAAACTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
* *
5109538 GCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTCCGAAAAAA
* * * *
5109603 TTTTAAAAACTCCGGAATCGTAAAAATTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAATCCGGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
5109668 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCAT
521 CCATGAAACCTCACGTGAAGGCGTAAGGGACCACTGTATGAATTTACAAGAAATAAAAATGGCAT
** * *
5109733 TGGCACGTAGAAATATAAAGATATGCCTAAACCCACTTACCACCCTATTGATCCACGGCTTGCGC
586 TGGCACACAGAAATATAAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
5109798 ATCCCGTCTCTCTGGCCGACGT-AGTGCTCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGATTGGC
651 ATCCCATCTCTCTGGCCGACGTCA-TGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGC
5109862 TTAG
715 TTAG
5109866 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGC-GACAGCACATGCCAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAG-CAGCACATGCCAG
* * * *
5109930 GCTTGGGCATGGGCTGGTGCCACATTTTTCTTCGTCGGGGCACC-TTCGTCGAAGCATCCCCGGA
65 GCTCGGGCATGGGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATT-GACGAAGCATCACCGGA
5109994 GAACCTGACCGACGGCATTGGGCTTCCGACGATCGGGGGGGCCGAGGGGG-TGTGCGCACATGAT
129 GAACCTGACCGACGGCATTGGGCTTCCGACGATCGGGGGGGCC-AGGGGGCTGTGCGCACATGAT
* * * * *
5110058 GTGCAATGGGTG-TGGGTACTTGGCCCTTATATTGGCCCCCTTATCCCTCATCAAATCTCGAGGA
193 GTGCAATGAGTGCT-GGTACTTAGCACTTATATTGGCCCCC-TATCCCTCATCAAACCTCGAGAA
* *
5110122 CTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
256 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCT
*
5110187 AAAATGGGGACACTTTTTTCAAAAGGTCACAAAATTTTGTACACTTCAAGTTTTTAGCTGAATTT
321 AAAATGGGGACACTTTTTTCAAAAGGTCACAAAA-CTTGTACACTTCAAGTTTTTAGCTGAATTT
* * * * *
5110252 TTTTGTGCATGCCAACAATAATACAATGATCATGTCTACCGAGTTTGGAGCCAAAACTCCTTTCG
385 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTCCG
* *
5110317 AAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAATTAGAAAATGAGT
450 AAAAAATTTTAAAAAATC-CGGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* **
5110381 CGTCTTGCCATGAAACCTCAGGTGAAGGCGTAAGGGACCACTGTATGAATTTACAAGCCATAAAA
514 CGTCTTGCCATGAAACCTCACGTGAAGGCGTAAGGGACCACTGTATGAATTTACAAGAAATAAAA
* * * *
5110446 ATGGCATTGGCACACCGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATCCACGG
579 ATGGCATTGGCACACAGAAATATAAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
5110511 CTTGCGCATCCCATCTCTCTGGCTGGCGTCATGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCG
644 CTTGCGCATCCCATCTCTCTGGCCGACGTCATGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
*
5110576 GTTGGCTTAG
709 ATTGGCTTAG
* * * *
5110586 GCATATGTAGTTCATTCCCAGTCAAAGATTGGATCAGACCGAGGGTTGCAGCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAGCAGCA
5110642 TGATCGGCAG
Statistics
Matches: 693, Mismatches: 74, Indels: 16
0.89 0.09 0.02
Matches are distributed among these distances:
717 4 0.01
718 195 0.28
719 118 0.17
720 373 0.54
721 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (718 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAGCAGCACATGCCAGG
CTCGGGCATGGGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATTGACGAAGCATCACCGGAGA
ACCTGACCGACGGCATTGGGCTTCCGACGATCGGGGGGGCCAGGGGGCTGTGCGCACATGATGTG
CAATGAGTGCTGGTACTTAGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCTAAAAT
GGGGACACTTTTTTCAAAAGGTCACAAAACTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCGGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACCTCACGTGAAGGCGTAAGGGACCACTGTATGAATTTACAAGAAATAAAAATGGCAT
TGGCACACAGAAATATAAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCATCTCTCTGGCCGACGTCATGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCT
TAG
Found at i:5110774 original size:26 final size:26
Alignment explanation
Indices: 5110745--5110795 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5110735 GTTGACTTAG
5110745 GCATACGGAGTTCATTCCCAGTCTAC
1 GCATACGGAGTTCATTCCCAGTCTAC
*
5110771 GCATACGGAGTTCATTCCTAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
5110796 AGATCGGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAC
Found at i:5111680 original size:26 final size:26
Alignment explanation
Indices: 5111651--5111703 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5111641 GTTAACTTAG
5111651 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
*
5111677 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
5111703 G
1 G
5111704 ATCGAACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:5111947 original size:906 final size:899
Alignment explanation
Indices: 5109866--5123676 Score: 14608
Period size: 906 Copynumber: 15.2 Consensus size: 899
5109856 ATTGGCTTAG
* * * **
5109866 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACC-AGACCGAGGGTTGCGACAGCACATGCCAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGA-ACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * *
5109930 GCTTGGGCATGGGCTGGTGCCACATTTTTCTTCGTCGGGGCACCTTCGTCGAAGCATCCCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
*
5109995 AACCTGACCGACGGCATTGGGCTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGT
* * *
5110060 GCAATGGGTG-TGGGTACTTGGCCCTTATATTGGCCCCCTTATCCCTCATCAAATCTCGAGGACT
194 GCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCC-TATCCCTCATCAAACCTCGAGAACT
* *
5110124 CACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
5110189 AATGGGGACACTTTTTTCAAAAGGTCACAAAATTTTGTACACTTCAAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * *
5110254 TTGTGCATGCCAACAATAATACAATGATCATGTCTACCGAGTTTGGAGCCAAAACTCCTTTCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
5110319 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAATTAGAAAATGAGTCGT
452 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * * *
5110384 CTTGCCATGAAACCTCAGGTGAAGGCGTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
5110449 GCATTGGCACACCGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
5110514 GCGCATCCCATCTCTCTGGCTGGCGTCA-TGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGT
647 GCGCATCCCGTCTCTCTGGCCGGCGT-AGTG--C-CC-GCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * * * *
5110578 TGGCTTAGGCATATGTAGTTCATTCCCAGTCAAAGATTGGATCAGACCGAGGGTTGCAGCAGCAT
707 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTAGCAGCAG
* * ** * * * *
5110643 GATCGGCAGCACGCAGAGGGGGACCCGGTCGATCTTCGGTTTGCGGATCCCACCCCTTTGGCCGG
772 GATCGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
5110708 CTAAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAC
837 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
5110771 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGGACCGAGGGTTGTGGCAGCACATG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GA----ACCGAACCGAGGGTTGCGGCAGCACATG
* *
5110836 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGTCAGAGCATCACC
61 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACC
* *
5110901 GGAGAACCTGACCGACGGCACTAGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGA
126 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
* * * *
5110965 TGTGCGATGGGTGCTGGTACATGGTCCTTATATTGGCCCCTTATCCCTCATCAAACATCGAGAAC
191 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
5111030 TCACA-CCCCTTAAACAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTG
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
5111094 AAATGGGGACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * *
5111159 TTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTCGGGCCAAAAATCCTTTCGA
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* *
5111224 AAAAATTTAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCG
451 AAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
** *
5111289 TCTTGCCATGAAACTTCTTGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
5111354 GGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCGCCTACCACCCTATCGATCCACGTCT
581 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * * * *
5111419 TGCACATCCCGTCTCTCTGGCTGGTGTAGTGCCAGCCCGGCTGCCCACCCACTCTTTTTGTCAGT
646 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC--C-GCCCGCCCGCTCGTTTCGTCGGT
* * *
5111484 TGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACTGAGGGTTGTAGCAGCAG
707 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTAGCAGCAG
* * * ** *
5111549 CATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGG
772 GATCGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
** * ** * *
5111614 CTGAGAACCCGCACGGTCGTTTTATGGGTTAACTTAGGCATACGGAGTTCATACCCAGTCTAA
837 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
5111677 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
5111742 CTCGGGAATGTGCTGGTGCCGCAATTTTCTTTGTCGGGGCACCATCGTCGGAGCATCACCGTTGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * ***
5111807 ACCTGATCGATGGCATTGGGGTTTTAACGATCGGGGGGGCCGTGGGGGGGTGTGCGCACATGATG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC---GGGGGGTGTGCGCACATGATG
* * * *
5111872 TGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCAAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
** * *
5111937 ACACCCCCTTAAACTGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
5112002 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
5112067 TGTGCGA-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TGCCTTCCGA
388 TGTGC-ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGA
5112130 AAAAATTTTAAAAAATC-CTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
451 AAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
*
5112194 GTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
515 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
5112259 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGC
580 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
5112324 TTGCGCATCCCATCTCTCTGGCCGGCGTAGTACCCGCCCGTCCGCCCGCTCGCTCGTTTCGTCGG
645 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * * * * * * *
5112389 TTGGCTTAGGCATACGGAGTACATTCCC-GATATAAGATTGGAGCGGACTGAGGGTTATGGTAGC
706 TTGGCTTAGGCATACGGAGTTCATTCCCAG-TCTAAGATCGGACCAGACCGAGGGTTGTAGCAGC
** * * * * *
5112453 AGGATCGGTAGCACATAGAGGGGGATCCGACCAATCCCCAGCTTACGCATCCCG------T--CC
770 AGGATCGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
**
5112510 -G-T----------ACGCTCGTTTCGTGGGTTGACTTTCGCATACGGAGTTCATTCCCAGTCTAA
835 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * ** *
5112563 GCATACGGAGTTCATTCCCAGTCTAAGATC-AGATCGGGCTGAGGGTT-CAAACTGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGAACCGAGGGTTGC-GGCAGCACATGCTG
* * * ** * *
5112626 GACTCGTGCATGTGCTAGTGCAACATTTTTCTTCGTCAGGGCACCATCG-CGGGAGCATCGA-CA
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATC-ACCG
* * * *
5112689 GAGAACCTGACCGGCGGCATTGGGGTTCCGACAATCGGGGGGCCCGGGGGGTGTGTGCACATGAT
127 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
* * *
5112754 GTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTACCCCTCATCAAACCTTGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
5112819 CACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
5112884 AATGGGGACACTTTTTTCAAATGGTCTC-AAGTCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
5112948 TTGTGCATACCAAAAAAAATACAAGGATCACTTGTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * **
5113013 AAAATTTTAAAAAATCCCAAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCAC
452 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
5113078 CTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTAAAAGCCAGAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
5113143 GCATTGGTATGTAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
5113208 GCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCG---G-CCGCTCATTTCGTCGATTGGCT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * *
5113269 TAGGCATACGGAGTTCATTCCCAGTTTTAGATCAGACCAGACCGAGGGTTACGATAG--G-AGGA
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT--G-TAGCAGCAGGA
* * * * * *
5113331 TTGGTAGCACGTAGAGGGGGACCTGACCGATCCCCGGCTTGAGCATCCC-CCCCTTCTGGTCGGC
774 TCGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCC-TCTGGCCGGC
* * * * *
5113395 TGAGCGCCCGGACGCTCGATTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAATCTAA
838 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
5113457 GCATAAGGAGTTCATTCCCAGTCTAAGCTC-AGACCGGATCGAGGGTTACGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGAACCGAGGGTTGCGGCAGCACATGCTGG
* * *
5113521 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCATCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* *
5113586 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGTGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
5113650 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
5113715 ACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
5113780 GGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
5113845 TGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TGCCTTCCGAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAA
*
5113909 AATTTTAAAAAATC-CTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
454 AATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
5113973 TTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
5114038 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCGACCTACCACCTTATTGATCCACGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
*
5114103 CGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * ** ** ** * *
5114164 AGGCATACGAAGTTCATT-CCATGTCTTAGATCAGACTTGATTGAGGGTTGCGGTAGTAGGATCG
713 AGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCGAGGGTTGTAGCAGCAGGATCG
** * ** * * * * ** *
5114228 ACAGCATGCAGAGGGGGACCCAACTGGTCCCCGACTTG-GCATCCCGCCCCTCTAGCTAGTTGAG
777 GTAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
5114292 CGCCCGCACGTTCGTTCCGT--G--GA-TTAGGCATTCGGAGTTCATTCCCTGTCTAA
842 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * * * * *
5114345 GATCAGACTGAACTGAGGGTTGCAGCAG-C-AGGATCG--CCCACACATGGAGGG--G-GAC-TC
1 G--CATACGGAGTTCA---TT-C-CCAGTCTAAGATCGAACCGA-AC--CGAGGGTTGCGGCAGC
* ** * * *** * * *** *
5114402 GACCGATCCCCGGCTTGCGCATCCCACCCCT-CTGGCCG-ACTGAGC--CGT-GGGTTG-ACTTA
56 -A-C-ATGCTGGGCTCGGGCAT----GTGCTGGT-GCCGCATTTTTCTTCGTCGGG--GCAC-CA
* * *** * ** * *** * *
5114461 GGCATACGGAGTTCATTC-CCAGTCTAAGCAT-ATGGA-GTTCATTCCTAG-T-CTATGATCGGA
110 -TCGT-CGGAG--CA-TCACC-GGAGAA-CCTGACCGACG-GCATT-GGGGTTCCGACGATCGG-
*** * ** * ** * * * *** * * ** * *
5114521 CTAGACCGAAGGTTACGACAGCCCATGCTGGGCTCGGGCATGTGCTGGT--GTCGCATTTTTCTT
165 GGGGGCCGGGGGGTGTG-C-GCACATGATGTGCGATGG---GTGCTGGTACTTGGCCCTTATATT
*** * * * **** **
5114584 CACCGGGGAACC-ATCGCCTGAGCATCGCCAGAGAACCTGACCGGTGGCATTGGGGTTCCGGCGA
225 -----GGCCCCCTATC-CCT---CAT---C--A-AACCT---C-G-AGAACT--CACACC--CCC
* ** * **** * * ** ** * * *** * * * *
5114648 TCGAGGGGGCCGGGGGGGTGTGCACACATGATG-TGCGATGGGT-GCTGCTACA-TGGCCCTTAT
266 T-TAAAGAGCATTTGAGAT-TTTACAGGT-TTGCTGCCA---GTAGCCATTAAAGT-G-TCTGAA
* ** * ** **** ** * *
5114710 ATTGGCCCCCTATCCCTCATCAAACCTTGAGCACTCACACCCCCTTAAAGAGCATTTGAGATTTT
323 ATGGGGACACT-T---TTTTCAAA---TG-G---TCACAAAATCTTGTACA-C-TTCGAG--TTT
* * ***** **
5114775 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAA
373 -----TTAGCT----G-A---ATT----T-TTT----T-GTG-CA-TGCCAACAAA-AAT-ACAA
* ** * *** * *** ** * * **
5114840 -AATCTTGTAC-ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
411 GGATCACGT-CTAC--CAAGTTTGGGGC-CAAAACTCCT-T-C---CGAA-AAAATTTTAA--A-
** * ** * * * *
5114903 CATGTCTACCAAGTTTGGGGCAAAAACCCCTTTCAAAAAAAT-TTTAAAACATCCCGAACCTCAA
463 -AAATCT-CGAA-----CCGCAAAAA---GTTTC--AAAAATCATGAAAA-AT--AGAA----AA
** * * ** *
5114967 AAAGT-TTCAAAAAT-CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGG
509 CGAGTCGTC----TTGC-CA---------------------------TGAAACTTCACGTGAAGG
* *
5115030 CTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
542 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* * * *
5115095 TGTGCCTAAACCCACCTGCCACCCTATCGATCCACAGCTTGCGCATCCTGTCTCTCTGGCCGACG
607 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* *
5115160 -AGTGCCCTCCCGCCCGCCTGTCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
672 TAGTGCCCGCCCGCCCGCC---C-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * ** * ** * * ** *
5115224 CAGTCAAAGATCAGACCAAACTAACGGTTGCGGTAGCAGGATCGGCAGCACGTTGAGGGTGACCC
733 CAGTCTAAGATCGGACCAGACCGAGGGTTGTAGCAGCAGGATCGGTAGCACGCAGAGGGGGACCC
* * ** * * *
5115289 GGCCGATCCTCAGCTTGCTTATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACGTTCGTTTCATG
798 GGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
*
5115354 TGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
863 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
5115391 GCATACGGAGTTCATTCCCAGTCTAAGATC-AGACC-AGA-CGAGGGTTACAGTAGCATATGCTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGA-ACCGAGGGTTGCGGCAGCACATGCTG
* * ** *** *
5115453 GGCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATTGTCGAA
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGA
** * * * *
5115518 GAACCTGACCGGTGGCATTGGGGTTTCGGCGATCGGAGGGGCC-GGGGGTGTTCGCACATGATGT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
**
5115582 GCGATGGGTGCTGGTACTTGGCTTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
5115647 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCGGCCAGTAGCCATTAAAGAGTTTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
5115712 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
5115777 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTTCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * ** * * *
5115842 AATTTTAAAAAATCCCGAACCGTAAAAGGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCATCT
454 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * * *
5115907 TGCCGTGAAAGTTCATGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATACAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
5115972 ATTGGCAGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *** * *
5116037 ACATCCCGTCTCTCTGGCCGGTACAGTGCCCGCCTGCTTGCCCGCCCGCTTGTTTCATCGGTTGG
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC--C--GCCCGCCCGCTCGTTTCGTCGGTTGG
* * * **
5116102 CTTATGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACAGGACCAAGGGTTGCGGCAGCAGGA
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA-GACCGAGGGTTGTAGCAGCAGGA
* * * * * *
5116166 TCGGCACCATGCAGAGGGGGACCCAGCCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCT
774 TCGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
*
5116231 GAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
5116292 G-AT-C---G---A-----A--C------C--A--G-ACCGAGGGTTGCTACTGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
5116331 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATTGCTGGAGCATCGTCGGAGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG---CA---C-----CATCGTCGGAGC
* *
5116396 ATCGCCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGC
120 ATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGC
* *
5116461 ACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTA
185 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
5116526 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAG
250 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
5116591 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTG
315 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * *
5116656 AAGTTTTTTGTGCATGCCAAAAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
380 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * * * *
5116721 TTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAATTTTCCAAAACCGTGAAAAATAGAAAAC
445 TTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* *
5116786 GAGTCGTCTTGCCATGAAAATTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCAT
510 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* ** *
5116851 AAAAATGGCATTGGTACATAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCC
575 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* ** *
5116916 ACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGT----GCCCGCCCGCCCTTTCGTTTCGTCA
640 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * * * *
5116977 ATTGGCTTAGGCATACGGAGTTCATTACCAGTCTAAGATCAGATCAGACCGAGGGTTGCAGCTGC
705 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTAGCAGC
* * * * * * * * * * *
5117042 AAGATCGATAGCATGTAGAGAGGGACTCGGTCGATCCTCGGCTTGTGCATCCGGCCACTCTGGCC
770 AGGATCGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
5117107 GACTGAACACCCGCACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
5117172 GCATACCGAGTTCATTCCCAGTCTAAGATC-AGACCGGACTGAAGGTTGCGACAGCACATTCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGAACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
5117236 GCTCGAGCATGTGCTGGTGCCACATTTTT-TTCGTCGAGGCACCATCGTCGGAGCATCGA-CAGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-ACCGGA
* * * * * * *
5117299 GAACCTGACCGGCGGCATTAGGGTTTCGGCGATTGGGGGGGCCGGGGGGTGTTCTCACATGATGT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
5117364 GCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCGTCATCAAACCTCAAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
5117429 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
5117494 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
5117559 GTCCATGACAACAAAAATAGAAGGATCACGTCTACTAAGTTTCGGGCCAAAACTCCTTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
5117624 AATTTTAAAAAATCCCGAACCGGAAAAAGTTTCGAAAGTCATGAAAAATAGAAAACGAGTCATCT
454 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
5117689 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** *
5117754 ATTGGCATACAGAAATATGAAGATGTGCCGAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
5117819 GCATCTCGTCTCTCTGGCCGACGTAGT----GCCCGCCCG--C-C-CGTTTCGTCAGATGGCTTA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * * *
5117876 GGCATACGGTGTTCATTCGCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAACAAGATCGGT
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTAGCAGCAGGATCGGT
* * * ** * * * *
5117941 AGAACTCAGAGGGGGACTCGATCGGTCCCCGGCTTGCGCATCTCGCCACTCTGACCGGCTGAGCG
779 AGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * *
5118006 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTGCCAGTCTAA
844 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
5118062 GCATACGTAGGTCATTCCCAATCTAAGATC-AGATCGGACCGAGGGTTTCAGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGAACCGAGGGTTGCGGCAGCACATGCTGG
* * ** * * *
5118126 GCTCGGGCATGTGCTGGTGTCACATTTTTCTTCACCGGGGCACCATCGTTGGAGCATCGCCGAAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* * * * ** * *
5118191 AACCTAACCGGCGGTATTGGTGTTCCGGTGATC-GGGGGGTCGGGGGGTTGTGCG-ACATGATGC
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-TGTGCGCACATGATGT
* *
5118254 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
5118319 CACCCCCTTAAAGAGCATTTGACATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
5118384 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
5118449 CTACATGCCAAGAAAAATACAAGGATCATGTCTACCAAGTTCGGGGCCAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * ** *
5118514 AATTTTACAAAATCTCGAGCCGTAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTCGACT
454 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
5118579 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
5118644 ATTGGCATGCAGAAATATGAAGATGTGCTTAAACCCACCTACCACCTTATCGATCCACGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
5118709 GCATCCCGCCTCTCTGGCCGGCGTAGTACCCGCCTGCCCGTCCGCTCGTTTTGTCGGTTGGTTTA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * *
5118774 GGCATACAGAGTTCATTCCTAGTCTAAGATTGGACC-GAACTGAGGGTTGTGGTAGTAGGATCGG
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGTAGCAGCAGGATCGG
* * * *
5118838 TAGCACGTAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATGCCGCCCCTCTGGTCGGCTGAGC
778 TAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * *
5118903 GCTCGCGCGCTCATTTCGTGAGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
5118960 CCATATGGAGTTCATTCCCAGTCTAAGATCGGACC-AGACCGAGGGTTGCGGCAGCACATCCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGA-ACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
5119024 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAACACCGAAA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
5119089 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * * * *
5119154 CGATGGCTGCTGGTACTTGACCGTAATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAT
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
5119219 GCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGT-TCGAAA
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAA
* *
5119283 TGGGGACACTTTTTTCAAATGGTCAC-AAATTTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
5119347 GTGCATCCCAACAAAAATACAAGGATCACGTCTACCAAGTTGGGGGCCAAAAATCCTTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
5119412 AATTTTAAAATATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTGT
454 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
5119477 TGCCATGAAACTTCACTTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
5119542 ATTGGCACACATAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
5119607 GCATCCCGTCACTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * *
5119672 GGCATATGAAGTTCATTCCCAGTCTAAGATCAGG-CCAGACCGAGGGTTGTAGCAGTAGGATCGA
714 GGCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCAGACCGAGGGTTGTAGCAGCAGGATCGG
* * * * *
5119736 CAGCACGCAGAGGGGGACCCGGTCGATCCCTGACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGC
778 TAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
5119801 GCCCGCACGCTCGTTTCGTGGGCTGACTTAGGCATACAGAGTTCATTCCCAATCTAA
843 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
5119858 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAAAGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** *
5119923 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCAT-GTCGGAGCATCGTCTGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * *
5119987 ACCTGACCGACGGCATT-GGGTTCC-AGCGATTGGGAGGGCCGGGGGGTGTGCACACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
5120050 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
5120115 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5120180 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
5120245 AGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAAATCCTTCTGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** *
5120310 ATTTTAAAAAATC-CTGAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
455 ATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * *
5120374 TGCCATGGAACTTCACGTGAAGGCTTAAGGGACCATTGGATAAATTTACAAGCAATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** *
5120439 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
5120504 GCATCCCGTCTCTCTGGCCGGTGTAGTGCCCACCCGCCCGCCCGCCCGCTTGTTTCGTTGGTTGG
649 GCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * *
5120569 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG-CGATAGTAGGA
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTAG-CAGCAGGA
* * * * * *
5120633 TCGGTAGCACGTAGAGGGGGACCCGGCCGATCCTCAGCTTACGCATCCCACCCCTCTGGTCGGCT
774 TCGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
5120698 GAGCGCCCGCACGCTAGATTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
839 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
5120759 GCATGCGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-CG-A----A---CC-G---AA-C---CG-AGGGT
* * * * *
5120824 ATTC-CCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGTAGCACATGCTGGGCTCAAGCATGTG
47 -TGCGGCAG-C----A-C--AT--G--C-TGGGCT-CGG--G--CATG-T--GCT---G-GT---
* * * * * *
5120888 CTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGTTGGAGCATCGCCGGAGAACCTGACCGGCA
83 -----GCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACG
** ** * *
5120953 GCATTGGGGTTCCGGTGATCGGAAGGGCCGGGGGGAGGGGTGTGAGCACATGATGTGCGAAGGGT
143 GCATTGGGGTTCCGACGATCGG--GGG--GGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGT
* * **
5121018 GCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACTGCCTT
203 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
5121083 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
268 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * *
5121148 TTTTTTTAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTTGCTGAATTTTTTTTTGCATGCC
333 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
5121213 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
398 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * ** * * *
5121278 TAATCTCAAATTGCAAAACGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAA
463 AAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * ** *
5121343 ACTTCGCGTGAAGGCTTAAGGGACCATTTTATGAATTTACAGGTAATAAAAATGGCATTGGCATG
528 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* *
5121408 CAGAAATATGAAGATGTGCATAAACCCACCTACTACCCTATCGATCCACGGCTTGCGCATCCCGT
593 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * *
5121473 CTCTCTGGCCGACGTA----CTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAG
658 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * *** *
5121534 AGTTCATTCCCAGTCTAAGATCGGA-CTGAACTGAAGGTTACGGCTGCAGGAT-GGATAGCACGC
723 AGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGTAGCAGCAGGATCGG-TAGCACGC
* * * *
5121597 AGAGAGGGACCCGGTCGATCCCCGGCTTGCGCATCCCTCCCCTCTGGCCGGCTGGGCGCCCGCAC
786 AGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
5121662 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
851 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** * *
5121711 GCATATGGAGTTCATTCCCAGTCTAAGATCAAACTGGATTGAGGGCTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
5121776 CTCGGGCATGTGCTGGTGCCGCGTTTTTCTTCGCCGGGG---CA-C-T------ATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
**
5121830 ACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGAGAGGGTGTGCGCACATGAT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC--GG-G-GGGTGTGCGCACATGAT
* * * * *
5121895 GTGCGATGGGTACTAGTACATGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTTGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
5121960 CACACCCCCTTAAAGAGCATTTGTGATTTTACAGGTTTGCTGCCAGTAGCTATTAGAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
5122025 AATGGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * *
5122090 TTGTGCATGCCAAAAAAAATATAGGGATCACTTCTACTAAGTTTGGGGCCAAAACTCCTTCCCAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* ** * *
5122155 AAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGT
452 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
5122220 CTTGCCATG-------A----AA--CTT----GA--ATT-TA-G-------AAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
5122257 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTC
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * *
5122322 GCTTATCCCGTCTCTATGGCCGGCGTAGT----GCCCGCCCGCCCGCTCGTTTCGTTGGTTGGCT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * ** *
5122383 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTAGACTGAGGGTTACAGCAGCAAGATCG
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTAGCAGCAGGATCG
** ** *
5122448 GTAGCATACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCATCCCTCTGGCTGGCTGAG
777 GTAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
5122513 CGCTCGCTCGCTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ***
5122571 GCATATGGAGTTCATTCCCAATCTAAGATCGGACC-AGACCGAGGGCCACGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGA-ACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
5122635 GCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATTGCCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* * *
5122700 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
*
5122765 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
5122830 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
5122895 TGGGGACACTTTTTTCAAATGGTCACAAAATTTTGTACACTTCGAGATTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
5122960 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTGGGGGCCAAAAATCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
5123025 AATTTT-AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
5123089 TGCCATGAAACTTCACAG-GAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TGCCATGAAACTTCAC-GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * * * * *
5123153 CATTACCATGCAGAAATATAAAGATGTGCCTAAGCCCACCTGCCACGCTATCGATCCACAGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
5123218 TGCATCCCGACACTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTTGTTTCATCGGTTGGCTT
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
** * * *
5123283 -GTTATACGGAGTTCATTCCCAGTCTAAGAGCGGACCGGACCGAGGGTTCG--GCAGTAGGATCG
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT-GTAGCAGCAGGATCG
** * * *
5123345 ACAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGTCCCTCTGGCTGGCTGAG
777 GTAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
5123410 CGCTCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAA
842 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * *
5123468 GCATATGGAGTTCATTCCCATTCTAAGATCGGACC-AGACCGAGGGCCGCAGCAGTACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGA-ACCGAGGGTTGCGGCAGCACATGCTGG
* *
5123532 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATTGTCGGAGCATC-CCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* * * *
5123596 AACCTGA-CTAGCGGTATTGGGGTTCTGACGATC-GGGGGGCCGGGGGGGTGTGCACACATGATG
130 AACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATG
5123659 TGCGATGGGTGCTGGTAC
193 TGCGATGGGTGCTGGTAC
5123677 GGAGTTCATT
Statistics
Matches: 10873, Mismatches: 1540, Indels: 996
0.81 0.11 0.07
Matches are distributed among these distances:
860 378 0.03
861 3 0.00
863 2 0.00
867 61 0.01
868 266 0.02
869 4 0.00
870 3 0.00
871 52 0.00
874 105 0.01
875 7 0.00
876 53 0.00
877 4 0.00
878 11 0.00
879 2 0.00
880 187 0.02
881 7 0.00
882 302 0.03
883 166 0.02
884 5 0.00
885 6 0.00
886 183 0.02
887 65 0.01
888 804 0.07
889 43 0.00
890 731 0.07
891 63 0.01
892 4 0.00
893 237 0.02
894 1126 0.10
895 151 0.01
896 229 0.02
897 581 0.05
898 934 0.09
899 209 0.02
900 175 0.02
901 529 0.05
902 14 0.00
903 19 0.00
904 9 0.00
905 131 0.01
906 1146 0.11
907 28 0.00
908 58 0.01
909 19 0.00
910 117 0.01
911 2 0.00
912 7 0.00
914 1 0.00
915 6 0.00
916 1 0.00
917 2 0.00
918 4 0.00
919 4 0.00
920 9 0.00
921 5 0.00
922 1 0.00
923 4 0.00
925 5 0.00
926 1 0.00
927 5 0.00
928 11 0.00
929 8 0.00
930 9 0.00
931 8 0.00
932 16 0.00
933 10 0.00
934 5 0.00
936 14 0.00
937 5 0.00
938 8 0.00
939 3 0.00
940 1 0.00
941 9 0.00
942 1 0.00
943 10 0.00
944 2 0.00
945 7 0.00
946 3 0.00
947 6 0.00
949 2 0.00
950 1 0.00
951 13 0.00
952 220 0.02
953 26 0.00
954 31 0.00
955 12 0.00
956 2 0.00
957 6 0.00
958 8 0.00
959 9 0.00
960 466 0.04
961 6 0.00
962 2 0.00
963 2 0.00
964 2 0.00
965 3 0.00
968 3 0.00
969 2 0.00
970 2 0.00
971 2 0.00
972 3 0.00
973 11 0.00
974 5 0.00
975 8 0.00
976 4 0.00
977 3 0.00
978 1 0.00
981 8 0.00
982 7 0.00
984 1 0.00
986 6 0.00
987 2 0.00
988 5 0.00
989 1 0.00
990 10 0.00
992 7 0.00
993 1 0.00
994 2 0.00
995 4 0.00
996 5 0.00
997 14 0.00
999 3 0.00
1000 1 0.00
1001 11 0.00
1002 8 0.00
1003 7 0.00
1004 7 0.00
1005 8 0.00
1006 3 0.00
1008 2 0.00
1010 3 0.00
1011 1 0.00
1012 1 0.00
1015 5 0.00
1016 1 0.00
1018 1 0.00
1021 3 0.00
1024 524 0.05
1025 373 0.03
1026 270 0.02
1027 292 0.03
1028 286 0.03
1029 249 0.02
1030 322 0.03
1031 296 0.03
1032 253 0.02
1033 480 0.04
1034 226 0.02
1035 191 0.02
1036 244 0.02
1037 359 0.03
1038 262 0.02
1039 210 0.02
1040 825 0.08
1041 363 0.03
1042 241 0.02
1043 307 0.03
1044 161 0.01
1045 463 0.04
1046 281 0.03
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTAGCAGCAGGATCGGTAG
CACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5112566 original size:26 final size:26
Alignment explanation
Indices: 5112537--5112589 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5112527 GTTGACTTTC
5112537 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5112563 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5112589 G
1 G
5112590 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5113868 original size:894 final size:894
Alignment explanation
Indices: 5109866--5123676 Score: 14759
Period size: 894 Copynumber: 15.2 Consensus size: 894
5109856 ATTGGCTTAG
** * * **
5109866 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGACAGCACATGCCAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
5109931 CTTGGGCATGGGCTGGTGCCACATTTTTCTTCGTCGGGGCACCTTCGTCGAAGCATCCCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* *
5109996 ACCTGACCGACGGCATTGGGCTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGTG
* * *
5110061 CAATGGGTG-TGGGTACTTGGCCCTTATATTGGCCCCCTTATCCCTCATCAAATCTCGAGGACTC
194 CGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCC-TATCCCTCATCAAACCTCGAGAACTC
* *
5110125 ACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
5110190 ATGGGGACACTTTTTTCAAAAGGTCACAAAATTTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
5110255 TGTGCATGCCAACAATAATACAATGATCATGTCTACCGAGTTTGGAGCCAAAACTCCTTTCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
5110320 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAATTAGAAAATGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * *
5110385 TTGCCATGAAACCTCAGGTGAAGGCGTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
5110450 CATTGGCACACCGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
5110515 CGCATCCCATCTCTCTGGCTGGCGTCATGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGT-A-----G--TGCCCGCCCGGCCGCTCGTTTCGTCGGTTG
* * * ** * * * *
5110580 GCTTAGGCATATGTAGTTCATTCCCAGTCAAAGATTGGATCAGACCGAGGGTTGCAGCAGCATGA
704 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGA
* * * ** * * * *
5110645 TCGGCAGCACGCAGAGGGGGACCCGGTCGATCTTCGGTTTGCGGATCCCACCCCTTTGGCCGGCT
769 TCGGTAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
5110710 AAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAC
834 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
5110771 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGGACCGAGGGTTGTGGCAGCACATG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC--A---GACCGGACCGAGGGTTGCGGCAGCACATG
* *
5110836 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGTCAGAGCATCACC
61 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACC
* * *
5110901 GGAGAACCTGACCGACGGCACTAGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGAT
126 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGAT
* * * *
5110966 GTGCGATGGGTGCTGGTACATGGTCCTTATATTGGCCCCTTATCCCTCATCAAACATCGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
5111031 CACA-CCCCTTAAACAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
5111095 AATGGGGACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
5111160 TTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTCGGGCCAAAAATCCTTTCGAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * *
5111225 AAAATTTAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGT
451 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
** *
5111290 CTTGCCATGAAACTTCTTGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
5111355 GCATTGGCACACAGAAATATGAAGATGTACCTAAACCCGCCTACCACCCTATCGATCCACGTCTT
581 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * * *
5111420 GCACATCCCGTCTCTCTGGCTGGTGTAGTGCCAGCCCGGCTGCCCACCCACTCTTTTTGTCAGTT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-G--G-----CCGCTCGTTTCGTCGGTT
* ** * ** * *
5111485 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACTGAGGGTTGTAGCAGCAGC
703 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGG
* * * ** *
5111550 ATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGC
768 ATCGGTAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
** * ** * *
5111615 TGAGAACCCGCACGGTCGTTTTATGGGTTAACTTAGGCATACGGAGTTCATACCCAGTCTAA
833 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
5111677 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGAACCAAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * **
5111741 GCTCGGGAATGTGCTGGTGCCGCAATTTTCTTTGTCGGGGCACCATCGTCGGAGCATCACCGTTG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
* ** ***
5111806 AACCTGATCGATGGCATTGGGGTTTTAACGATCGGGGGGGCCGTGGGGGGGTGTGCGCACATGAT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC---GGGGGGTGTGCGCACATGAT
* * * *
5111871 GTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCAAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
** * *
5111936 CACACCCCCTTAAACTGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
5112001 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
5112066 TTGTGCGA-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TGCCTTCCG
386 TTGTGC-ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCG
* *
5112129 AAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
449 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
*
5112194 GTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
5112259 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGC
579 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
5112324 TTGCGCATCCCATCTCTCTGGCCGGCGTAGTACCCGCCCGTCCGCCCGCTCGCTCGTTTCGTCGG
644 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCG--C-CCGGC-CGCTCGTTTCGTCGG
* * ** * * * **
5112389 TTGGCTTAGGCATACGGAGTACATTCCC-GATATAAGATTGGAGCGGACTGAGGGTTATGGTAGC
701 TTGGCTTAGGCATACGGAGTTCATTCCCAG-TCTAAGATCAGACCAGACCGAGGGTTGCGGTAGC
* * * * * *
5112453 AGGATCGGTAGCACATAGAGGGGGATCCGACCAATCCCCAGCTTACGCATCCCG------T--CC
765 AGGATCGGTAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
**
5112510 -G-T----------ACGCTCGTTTCGTGGGTTGACTTTCGCATACGGAGTTCATTCCCAGTCTAA
830 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
5112563 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGGCTGAGGGTT-CAAACTGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-GGCAGCACATGCTGG
* * * ** * *
5112627 ACTCGTGCATGTGCTAGTGCAACATTTTTCTTCGTCAGGGCACCATCG-CGGGAGCATCGA-CAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATC-ACCGG
* *
5112690 AGAACCTGACCGGCGGCATTGGGGTTCCGACAATCGGGGGGCCCGGGGGGTGTGTGCACATGATG
128 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATG
* * *
5112755 TGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTACCCCTCATCAAACCTTGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
5112820 ACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
5112885 ATGGGGACACTTTTTTCAAATGGTCTC-AAGTCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
5112949 TGTGCATACCAAAAAAAATACAAGGATCACTTGTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * **
5113014 AAATTTTAAAAAATCCCAAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCACC
452 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
5113079 TTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTAAAAGCCAGAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
5113144 CATTGGTATGTAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
5113209 CGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGGCCGCTCATTTCGTCGATTGGCTTAGGC
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGGCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * *
5113274 ATACGGAGTTCATTCCCAGTTTTAGATCAGACCAGACCGAGGGTTACGATAGGAGGATTGGTAGC
712 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGTAGC
* * * *
5113339 ACGTAGAGGGGGACCTGACCGATCCCCGGCTTGAGCATCCC-CCCCTTCTGGTCGGCTGAGCGCC
777 ACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCC-TCTGGCCGGCTGAGCGCC
* * * * *
5113403 CGGACGCTCGATTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAATCTAA
841 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
5113457 GCATAAGGAGTTCATTCCCAGTCTAAGCTCAGACCGGATCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
5113522 CTCGGGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
*
5113587 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGTGCACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
5113652 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
5113717 CCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
5113782 GGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
5113847 CAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TGCCTTCCGAAAAAA
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAA
* * *
5113911 TTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
5113976 CCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
5114041 TGGCATGCAGAAATATGAAGATGTGCCTAAACCGACCTACCACCTTATTGATCCACGGCTTGCGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
5114106 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGGCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * ** ** * ** *
5114171 CGAAGTTCATT-CCATGTCTTAGATCAGACTTGATTGAGGGTTGCGGTAGTAGGATCGACAGCAT
715 CGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGTAGCAC
* ** * * * * ** *
5114235 GCAGAGGGGGACCCAACTGGTCCCCGACTTG-GCATCCCGCCCCTCTAGCTAGTTGAGCGCCCGC
779 GTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * * *
5114299 ACGTTCGTTCCGT--G--GA-TTAGGCATTCGGAGTTCATTCCCTGTCTAA
844 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * * * * * * *
5114345 GATCAGACTGAACTGAGGGTTGCAGCAG-C-AGGATC-G-CC-CACAC-ATGG-AGGGGGACTCG
1 G--CATACGGAGTTCA---TT-C-CCAGTCTAAGATCAGACCGGAC-CGAGGGTTGCGGCA-GC-
* ** * * *** * * *** *
5114403 ACCGATCCCCGGCTTGCGCATCCCACCCCT-CTGGCCG-ACTGAGC--CGT-GGGTTG-ACTTAG
56 A-C-ATGCTGGGCTCGGGCAT----GTGCTGGT-GCCGCATTTTTCTTCGTCGGG--GCAC-CA-
* * *** * * * * *** * *
5114462 GCATACGGAGTTCATTC-CCAGTCTAAGCAT-A-TGGAGTTCATTCCTAG-T-CTATGATCGGAC
110 TCGT-CGGAG--CA-TCACC-GGAGAA-CCTGACCGGCG-GCATT-GGGGTTCCGACGATCGG--
** * ** * ** * * * *** * * ** * *
5114522 TAGACCGAAGGTTACGACAGCCCATGCTGGGCTCGGGCATGTGCTGGT--GTCGCATTTTTCTTC
165 GGGGCCGGGGGGTGTG-C-GCACATGATGTGCGATGG---GTGCTGGTACTTGGCCCTTATATT-
*** * * * **** **
5114585 ACCGGGGAACC-ATCGCCTGAGCATCGCCAGAGAACCTGACCGGTGGCATTGGGGTTCCGGCGAT
224 ----GGCCCCCTATC-CCT---CAT---C--A-AACCT---C-G-AGAACT--CACACC--CCCT
* ** * **** * * ** ** * * *** * * * *
5114649 CGAGGGGGCCGGGGGGGTGTGCACACATGATG-TGCGATGGGT-GCTGCTACA-TGGCCCTTATA
266 -TAAAGAGCATTTGAGAT-TTTACAGGT-TTGCTGCCA---GTAGCCATTAAAGT-G-TCTGAAA
* ** * ** **** ** * *
5114711 TTGGCCCCCTATCCCTCATCAAACCTTGAGCACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
323 TGGGGACACT-T---TTTTCAAA---TG-G---TCACAAAATCTTGTACA-C-TTCGAG--TTT-
* * ***** **
5114776 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAA-
372 ----TTAGCT----G-A---ATT----T-TTT----T-GTG-CA-TGCCAACAAA-AAT-ACAAG
* ** * *** * *** ** * * **
5114840 AATCTTGTAC-ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA--ATACAAGGA
411 GATCACGT-CTAC--CAAGTTTGGGGC-CAAAACTCCT-T-C---CGAA-AAAATTTTA-AAAAA
** * *
5114902 TCATGTCTACCAAGTTTGGGGCAAAAACCCCTTTCAAAAAAATTTTAAAACATCCCGAACCTCAA
465 TCCCG--AACC--G--T-----AAAAA---GTTTC------A----AAAA--T--C--A--T---
*
5114967 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCT
495 ---G------AAA--------AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* *
5115032 TAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
543 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATG
* * * *
5115097 TGCCTAAACCCACCTGCCACCCTATCGATCCACAGCTTGCGCATCCTGTCTCTCTGGCCGACG-A
608 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* *
5115161 GTGCCCTCCCGCCCGCCTGTCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
673 GTG----CCCGCCCG---G-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * ** * * * *
5115226 GTCAAAGATCAGACCAAACTAACGGTTGCGGTAGCAGGATCGGCAGCACGTTGAGGGTGACCCGG
730 GTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGTAGAGGGGGACCCGG
* * ** * * * *
5115291 CCGATCCTCAGCTTGCTTATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACGTTCGTTTCATGTG
795 CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
5115356 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
860 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
5115391 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTACAGTAGCATATGCTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** *** *
5115455 CTCAGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATTGTCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * *
5115520 ACCTGACCGGTGGCATTGGGGTTTCGGCGATCGGAGGGGCC-GGGGGTGTTCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTGC
**
5115584 GATGGGTGCTGGTACTTGGCTTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
5115649 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCGGCCAGTAGCCATTAAAGAGTTTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
5115714 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
5115779 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTTCAAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* ** * * *
5115844 TTTTAAAAAATCCCGAACCGTAAAAGGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCATCTTG
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * * * *
5115909 CCGTGAAAGTTCATGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATACAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
5115974 TGGCAGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
*** * *
5116039 ATCCCGTCTCTCTGGCCGGTACAGTGCCCGCCTGCTTGCCCGCCCGCTTGTTTCATCGGTTGGCT
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC--C--G---G-CCGCTCGTTTCGTCGGTTGGCT
* * * *
5116104 TATGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACAGGACCAAGGGTTGCGGCAGCAGGATC
707 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACCGAGGGTTGCGGTAGCAGGATC
* * * * * * *
5116168 GGCACCATGCAGAGGGGGACCCAGCCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGA
771 GGTAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
*
5116233 ACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
5116292 G-AT-C---G---A-----A--C------C--A---GACCGAGGGTTGCTACTGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
5116331 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATTGCTGGAGCATCGTCGGAGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG---CA---C-----CATCGTCGGAGC
* * *
5116396 ATCGCCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGC
120 ATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGC
* *
5116461 ACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTA
184 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
5116526 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAG
249 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
5116591 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTG
314 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * *
5116656 AAGTTTTTTGTGCATGCCAAAAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
379 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * * * *
5116721 TTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAATTTTCCAAAACCGTGAAAAATAGAAAAC
444 TTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* *
5116786 GAGTCGTCTTGCCATGAAAATTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCAT
509 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* ** *
5116851 AAAAATGGCATTGGTACATAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCC
574 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * ** **
5116916 ACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCTTTCGTTTCGTCAATTG
639 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGGCCGCTCGTTTCGTCGGTTG
* * * *
5116981 GCTTAGGCATACGGAGTTCATTACCAGTCTAAGATCAGATCAGACCGAGGGTTGCAGCT-GCAAG
704 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GGTAGCAGG
* * * * * * * * * *
5117045 ATCGATAGCATGTAGAGAGGGACTCGGTCGATCCTCGGCTTGTGCATCCGGCCACTCTGGCCGAC
768 ATCGGTAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
5117110 TGAACACCCGCACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
833 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
5117172 GCATACCGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAAGGTTGCGACAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
5117237 CTCGAGCATGTGCTGGTGCCACATTTTT-TTCGTCGAGGCACCATCGTCGGAGCATCGA-CAGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-ACCGGAG
* * * * * *
5117300 AACCTGACCGGCGGCATTAGGGTTTCGGCGATTGGGGGGGCCGGGGGGTGTTCTCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGA-TCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
5117365 CGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCGTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
5117430 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
5117495 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
5117560 TCCATGACAACAAAAATAGAAGGATCACGTCTACTAAGTTTCGGGCCAAAACTCCTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
5117625 ATTTTAAAAAATCCCGAACCGGAAAAAGTTTCGAAAGTCATGAAAAATAGAAAACGAGTCATCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
5117690 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** *
5117755 TTGGCATACAGAAATATGAAGATGTGCCGAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
5117820 CATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCC-G-C-C-CGTTTCGTCAGATGGCTTAGGCAT
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGGCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * * * * *
5117881 ACGGTGTTCATTCGCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAACAAGATCGGTAGAAC
714 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGTAGCAC
* ** * * * *
5117946 -TCAGAGGGGGACTCGATCGGTCCCCGGCTTGCGCATCTCGCCACTCTGACCGGCTGAGCGCCCG
779 GT-AGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * *
5118010 CACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTGCCAGTCTAA
843 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
5118062 GCATACGTAGGTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTTCAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * *
5118127 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCACCGGGGCACCATCGTTGGAGCATCGCCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * ** * **
5118192 ACCTAACCGGCGGTATTGGTGTTCCGGTGATCGGGGGGTCGGGGGGTTGTGCG-ACATGATGCAC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG-TGTGCGCACATGATGTGC
*
5118256 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
5118321 CCCCCTTAAAGAGCATTTGACATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
5118386 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTCT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
5118451 ACATGCCAAGAAAAATACAAGGATCATGTCTACCAAGTTCGGGGCCAAAACTCCTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * ** *
5118516 TTTTACAAAATCTCGAGCCGTAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTCGACTTG
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
5118581 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
5118646 TGGCATGCAGAAATATGAAGATGTGCTTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
5118711 ATCCCGCCTCTCTGGCCGGCGTAGTACCCGCCTGCCCGTCCGCTCGTTTTGTCGGTTGGTTTAGG
650 ATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGGCCGCTCGTTTCGTCGGTTGGCTTAGG
* * ** * * *
5118776 CATACAGAGTTCATTCCTAGTCTAAGATTGGACC-GAACTGAGGGTTGTGGTAGTAGGATCGGTA
711 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGTAGCAGGATCGGTA
* * *
5118840 GCACGTAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATGCCGCCCCTCTGGTCGGCTGAGCGC
775 GCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * * *
5118905 TCGCGCGCTCATTTCGTGAGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
5118960 CCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATCCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
5119025 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAACACCGAAAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
*
5119090 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * * * **
5119155 GATGGCTGCTGGTACTTGACCGTAATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCATG
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
5119220 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGT-TCGAAAT
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAAT
* *
5119284 GGGGACACTTTTTTCAAATGGTCAC-AAATTTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
5119348 TGCATCCCAACAAAAATACAAGGATCACGTCTACCAAGTTGGGGGCCAAAAATCCTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** * *
5119413 ATTTTAAAATATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTGTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
5119478 GCCATGAAACTTCACTTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
5119543 TTGGCACACATAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
5119608 CATCCCGTCACTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAG
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG---G-CCGCTCGTTTCGTCGGTTGGCTTAG
* * * ** * * **
5119673 GCATATGAAGTTCATTCCCAGTCTAAGATCAGGCCAGACCGAGGGTTGTAGCAGTAGGATCGACA
710 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGTA
* * * * *
5119738 GCACGCAGAGGGGGACCCGGTCGATCCCTGACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGC
775 GCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
5119803 CCGCACGCTCGTTTCGTGGGCTGACTTAGGCATACAGAGTTCATTCCCAATCTAA
840 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *
5119858 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAAAGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** *
5119923 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCAT-GTCGGAGCATCGTCTGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * *
5119987 ACCTGACCGACGGCATT-GGGTTCC-AGCGATTGGGAGGGCCGGGGGGTGTGCACACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGG-GGGCCGGGGGGTGTGCGCACATGATGTG
*
5120050 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
5120115 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5120180 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
5120245 AGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAAATCCTTCTGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
5120310 ATTTTAAAAAATCCTGAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
5120375 GCCATGGAACTTCACGTGAAGGCTTAAGGGACCATTGGATAAATTTACAAGCAATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** *
5120440 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
5120505 CATCCCGTCTCTCTGGCCGGTGTAGTGCCCACCCGCCCGCCCGCCCGCTTGTTTCGTTGGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGCCCG---G-CCGCTCGTTTCGTCGGTTGGC
* * *
5120570 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGTAGGATC
706 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATC
* * * * *
5120635 GGTAGCACGTAGAGGGGGACCCGGCCGATCCTCAGCTTACGCATCCCACCCCTCTGGTCGGCTGA
771 GGTAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
5120700 GCGCCCGCACGCTAGATTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
836 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
5120759 GCATGCGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A---CC-G-----G-A-CCG-AGGGT
* * * * **
5120824 ATTC-CCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGTAGCACATGCTGGGCTCAAGCATGTG
47 -TGCGGCAG-C----A-C--AT--G--C-TGGGCT-CGG--GCATGTGCT-GG-T---GC-----
* * * * *
5120888 CTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGTTGGAGCATCGCCGGAGAACCTGACCGGCA
85 -------CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCG
** * * *
5120953 GCATTGGGGTTCCGGTGATCGGAAGGGCCGGGGGGAGGGGTGTGAGCACATGATGTGCGAAGGGT
143 GCATTGGGGTTCCGACGATCGG-GGGGCC----GG-GGGGTGTGCGCACATGATGTGCGATGGGT
* * **
5121018 GCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACTGCCTT
202 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
5121083 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
267 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * *
5121148 TTTTTTTAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTTGCTGAATTTTTTTTTGCATGCC
332 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
5121213 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
397 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * * ** * * * *
5121278 TAATCTCAAATTGCAAAACGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAA
462 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * ** *
5121343 ACTTCGCGTGAAGGCTTAAGGGACCATTTTATGAATTTACAGGTAATAAAAATGGCATTGGCATG
527 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* *
5121408 CAGAAATATGAAGATGTGCATAAACCCACCTACTACCCTATCGATCCACGGCTTGCGCATCCCGT
592 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
5121473 CTCTCTGGCCGACGTACTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTT
657 CTCTCTGGCCGGCGTAGTGCCCGCCCGGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * *
5121538 CATTCCCAGTCTAAGATCGGA-CTGAACTGAAGGTTACGGCT-GCAGGAT-GGATAGCACGCAGA
722 CATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGG-TAGCAGGATCGG-TAGCACGTAGA
* * * *
5121600 GAGGGACCCGGTCGATCCCCGGCTTGCGCATCCCTCCCCTCTGGCCGGCTGGGCGCCCGCACGCT
784 GGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
5121665 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
849 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * *
5121711 GCATATGGAGTTCATTCCCAGTCTAAGATCAAACTGGATTGAGGGCTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
5121776 CTCGGGCATGTGCTGGTGCCGCGTTTTTCTTCGCCGGGG---CA-C-T------ATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
*
5121830 ACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGAGAGGGTGTGCGCACATGAT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC--GG-G-GGGTGTGCGCACATGAT
* * * * *
5121895 GTGCGATGGGTACTAGTACATGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTTGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
5121960 CACACCCCCTTAAAGAGCATTTGTGATTTTACAGGTTTGCTGCCAGTAGCTATTAGAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
5122025 AATGGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * *
5122090 TTGTGCATGCCAAAAAAAATATAGGGATCACTTCTACTAAGTTTGGGGCCAAAACTCCTTCCCAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * ** * *
5122155 AAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGT
451 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
5122220 CTTGCCATG-------A----AA--CTT----GA--ATT-TA-G-------AAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
5122257 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTC
581 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * * *
5122322 GCTTATCCCGTCTCTATGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGG
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGGCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * *
5122387 CATACGGAGTTCATTCCCAGTCTAAGATC-GAACTAGACTGAGGGTTACAGCAGCAAGATCGGTA
711 CATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGTAGCAGGATCGGTA
*** ** *
5122451 GCATACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCATCCCTCTGGCTGGCTGAGCGC
775 GCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
5122516 TCGCTCGCTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ***
5122571 GCATATGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGCCACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
5122636 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATTGCCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* *
5122701 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTG
*
5122766 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
5122831 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5122896 GGGGACACTTTTTTCAAATGGTCACAAAATTTTGTACACTTCGAGATTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
5122961 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTGGGGGCCAAAAATCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
5123026 ATTTT-AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
5123090 GCCATGAAACTTCACAG-GAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 GCCATGAAACTTCAC-GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * * * * * *
5123154 ATTACCATGCAGAAATATAAAGATGTGCCTAAGCCCACCTGCCACGCTATCGATCCACAGCTTGT
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
5123219 GCATCCCGACACTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTTGTTTCATCGGTTGGCTT-
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG---GCC-GCTCGTTTCGTCGGTTGGCTTA
** * * * * * **
5123283 GTTATACGGAGTTCATTCCCAGTCTAAGAGCGGACCGGACCGAGGGTT-CGGCAGTAGGATCGAC
709 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGT
* *
5123347 AGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGTCCCTCTGGCTGGCTGAGCG
774 AGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * *
5123412 CTCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAA
839 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** * *
5123468 GCATATGGAGTTCATTCCCATTCTAAGATCGGACCAGACCGAGGGCCGCAGCAGTACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
5123533 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATTGTCGGAGCATC-CCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
** * * *
5123597 ACCTGACTAGCGGTATTGGGGTTCTGACGATCGGGGGGCCGGGGGGGTGTGCACACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGC
5123662 GATGGGTGCTGGTAC
195 GATGGGTGCTGGTAC
5123677 GGAGTTCATT
Statistics
Matches: 10901, Mismatches: 1524, Indels: 972
0.81 0.11 0.07
Matches are distributed among these distances:
859 1 0.00
860 378 0.03
861 3 0.00
863 2 0.00
867 61 0.01
868 266 0.02
869 4 0.00
870 3 0.00
871 52 0.00
874 110 0.01
875 10 0.00
876 54 0.00
877 2 0.00
878 8 0.00
879 2 0.00
880 179 0.02
881 8 0.00
882 302 0.03
883 165 0.02
884 3 0.00
885 9 0.00
886 178 0.02
887 63 0.01
888 813 0.07
889 51 0.00
890 731 0.07
891 61 0.01
892 3 0.00
893 229 0.02
894 1146 0.11
895 163 0.01
896 227 0.02
897 589 0.05
898 935 0.09
899 204 0.02
900 192 0.02
901 531 0.05
902 12 0.00
903 14 0.00
904 8 0.00
905 121 0.01
906 1134 0.10
907 27 0.00
908 60 0.01
909 17 0.00
910 120 0.01
911 2 0.00
912 7 0.00
913 2 0.00
914 1 0.00
915 2 0.00
916 2 0.00
917 9 0.00
918 5 0.00
919 4 0.00
920 10 0.00
921 5 0.00
922 1 0.00
923 4 0.00
924 1 0.00
925 5 0.00
926 2 0.00
927 3 0.00
928 14 0.00
929 8 0.00
930 4 0.00
931 6 0.00
932 16 0.00
933 10 0.00
934 3 0.00
935 1 0.00
936 14 0.00
937 2 0.00
938 4 0.00
939 2 0.00
940 1 0.00
941 7 0.00
942 1 0.00
943 10 0.00
944 1 0.00
945 6 0.00
946 1 0.00
947 3 0.00
948 2 0.00
950 4 0.00
951 10 0.00
952 217 0.02
953 26 0.00
954 31 0.00
955 17 0.00
956 10 0.00
957 4 0.00
958 8 0.00
959 7 0.00
960 468 0.04
961 5 0.00
962 2 0.00
963 2 0.00
964 2 0.00
965 3 0.00
968 3 0.00
969 2 0.00
970 2 0.00
971 2 0.00
972 3 0.00
973 11 0.00
974 5 0.00
975 8 0.00
976 4 0.00
977 3 0.00
978 1 0.00
980 2 0.00
981 15 0.00
982 4 0.00
983 3 0.00
985 1 0.00
986 3 0.00
988 4 0.00
989 1 0.00
990 10 0.00
992 5 0.00
993 1 0.00
994 2 0.00
995 4 0.00
997 6 0.00
1000 1 0.00
1001 12 0.00
1002 6 0.00
1003 2 0.00
1004 7 0.00
1005 11 0.00
1006 2 0.00
1007 1 0.00
1008 2 0.00
1009 1 0.00
1010 3 0.00
1011 1 0.00
1012 1 0.00
1013 1 0.00
1015 5 0.00
1016 1 0.00
1018 1 0.00
1019 1 0.00
1021 3 0.00
1024 531 0.05
1025 379 0.03
1026 270 0.02
1027 300 0.03
1028 286 0.03
1029 258 0.02
1030 334 0.03
1031 297 0.03
1032 263 0.02
1033 656 0.06
1034 239 0.02
1035 191 0.02
1036 262 0.02
1037 365 0.03
1038 264 0.02
1039 216 0.02
1040 938 0.09
1041 410 0.04
1042 244 0.02
1043 314 0.03
1044 172 0.02
1045 465 0.04
1046 310 0.03
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGGCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGT
AGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5114498 original size:26 final size:26
Alignment explanation
Indices: 5114462--5114512 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5114452 GTTGACTTAG
5114462 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
5114488 GCATATGGAGTTCATTCCTAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
5114513 TGATCGGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5115395 original size:26 final size:26
Alignment explanation
Indices: 5115365--5115417 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5115355 GTTGACTTAG
5115365 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5115391 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5115417 G
1 G
5115418 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5117182 original size:26 final size:26
Alignment explanation
Indices: 5117146--5117198 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5117136 GTTGACTTAG
*
5117146 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
5117172 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
5117198 G
1 G
5117199 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:5118971 original size:26 final size:26
Alignment explanation
Indices: 5118935--5118985 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5118925 TTAACTTAGG
5118935 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
*
5118961 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
5118986 GATCGGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:5119331 original size:898 final size:900
Alignment explanation
Indices: 5114315--5123676 Score: 11644
Period size: 898 Copynumber: 10.4 Consensus size: 900
5114305 GTTCCGTGGA
* * * * * *
5114315 TTAGGCATTCGGAGTTCATTCCCTGTCTAAGATCAGACTGAACTGAGGGTTGCAGCAGCAGGATC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATC
** * * * * *
5114380 GCCCA-CACATGGAGGGGGACTCGAC-CGATCCCCGGCTTGCGCATCCCACCCCTCTGG-C--C-
66 G-GTAGCACGTAGAGGGGGACCCGGCTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
*
5114439 GA----CTG-A-G--C----CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
130 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * * * * *
5114492 ATGGAGTTCATTCCTAGTCTATGATCGGACTAGACCGAAGGTTACGACAGCCCATGCTGGGCTCG
195 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* ** * * * *
5114557 GGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGAACCATCGCCTGAGCATCGCCAGAGAACCT
260 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCT
* * * *
5114622 GACCGGTGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGGTGTGCACACATGATGTGCGAT
325 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGAT
* * *
5114687 GGGTGCTGCTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGCACTCACACCC
389 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
*
5114752 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGG
454 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
5114817 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
519 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * *
5114882 TGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACCCCTTTCAAAAAAATTT
584 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * *
5114947 TAAAACATCCCGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
649 TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
5115012 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGG
714 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
5115077 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACAGCTTGCGCATC
779 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * *
5115142 CTGTCTCTCTGGCCGACG-AGTGCCCTCCCGCCCGCCTGTCTGCTCATTTCGTCGGTTGGC
844 CCGTCTCTCTGGCCGGCGTAGTACCCGCCCGCCCGCC---C-GCTCGTTTCGTCGGTTGGC
* * * ** * *
5115202 TTAGGCATACGGAGTTCATTCCCAGTCAAAGATCAGACCAAACTAACGGTTGCGGTAGCAGGATC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATC
* * * * * **
5115267 GGCAGCACGTTGAGGGTGACCCGGC-CGATCCTCAGCTTGCTTATCCCGCCCCTCTGGCCGGCTG
66 GGTAGCACGTAGAGGGGGACCCGGCTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * *
5115331 AGTGCCCGCACGTTCGTTTCATGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
131 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * * * * *
5115396 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTACAGTAGCATATGCTTGGCTCAG
196 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* ** * * *
5115460 GCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATTGTCGAAGAACCTG
261 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
* * * * *
5115525 ACCGGTGGCATTGGGGTTTCGGCGATCGGAGGGGCC-GGGGGTGTTCGCACATGATGTGCGATGG
326 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
** *
5115589 GTGCTGGTACTTGGCTTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
391 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
* * * *
5115654 TTAAAGAGCATTTGAGATTTTATAGGTTTGCGGCCAGTAGCCATTAAAGAGTTTGAAATGGGGAC
456 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
5115719 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATG
521 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
5115784 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTTCAAAAAAATTTTA
586 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * ** * * *
5115849 AAAAATCCCGAACCGTAAAAGGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCATCTTGCCGTG
651 AAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * * *
5115914 AAAGTTCATGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATACAAATGGCATTGGCA
716 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
5115979 GGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCC
781 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
*** * * *
5116044 GTCTCTCTGGCCGGTACAGTGCCCGCCTGCTTGCCCGCCCGCTTGTTTCATCGGTTGGC
846 GTCTCTCTGGCCGGCGTAGTACCCGCC--C--GCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * *
5116103 TTATGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACCAAGGGTTGCGGCAGCAGGATC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATC
* * * * * * *
5116168 GGCACCATGCAGAGGGGGACCCAGC-CGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTG
66 GGTAGCACGTAGAGGGGGACCCGGCTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
5116232 AACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA
131 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
** * * *
5116291 ---AG---------A-TC---GA----ACCAGACCGAGGGTTGCTACTGCACATGTTGGGCTTGG
196 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* **
5116336 GCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATTGCTGGAGCATCGTCGGAGCATCGC
261 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG---CA---C-----CATCGTCGGAGCATCGC
* *
5116401 CGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATG
315 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATG
* *
5116466 ATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAA
380 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
*
5116531 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCT
445 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
5116596 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAAGTT
510 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
5116661 TTTTGTGCATGCCAAAAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
575 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * * *
5116726 AAAAAATTTTAAAAAATCCCAAACCGCAAAAATTTTCCAAAACCGTGAAAAATAGAAAACGAGTC
640 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
5116791 GTCTTGCCATGAAAATTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAA
705 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
5116856 TGGCATTGGTACAT--AGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACG
770 TGGCATTGG--CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* ** **
5116919 GCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGT----GCCCGCCCGCCCTTTCGTTTCGTCAATT
833 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
5116980 GGC
898 GGC
* * * * * *
5116983 TTAGGCATACGGAGTTCATTACCAGTCTAAGATCAGATC-AGACCGAGGGTTGCAGCTGCAAGAT
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCAGGAT
* * * * * * * * *
5117047 CGATAGCATGTAGAGAGGGACTCGG-TCGATCCTCGGCTTGTGCATCCGGCCACTCTGGCCGACT
65 CGGTAGCACGTAGAGGGGGACCCGGCTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
5117111 GAACACCCGCACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
130 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * * * *
5117176 ACCGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAAGGTTGCGACAGCACATTCTGGGCTCG
195 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * * * *
5117241 AGCATGTGCTGGTGCCACATTTTT-TTCGTCGAGGCACCATCGTCGGAGCATCGACAGAGAACCT
260 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCT
* * * * * *
5117305 GACCGGCGGCATTAGGGTTTCGGCGATTGGGGGGGCCGGGGGGTGTTCTCACATGATGTGCGATG
325 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* * **
5117370 GGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCGTCATCAAACCTCAAGAACTCACACCCC
390 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
*
5117435 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGA
455 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
5117500 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTGTCCAT
520 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * *
5117565 GACAACAAAAATAGAAGGATCACGTCTACTAAGTTTCGGGCCAAAACTCCTTCCAAAAAAATTTT
585 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * * * *
5117630 AAAAAATCCCGAACCGGAAAAAGTTTCGAAAGTCATGAAAAATAGAAAACGAGTCATCTTGCCAT
650 AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
5117695 GAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGC
715 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
5117760 ATACAGAAATATGAAGATGTGCCGAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCT
780 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
5117825 CGTCTCTCTGGCCGACGTAGT----GCCCGCCCG--C-C-CGTTTCGTCAGATGGC
845 CGTCTCTCTGGCCGGCGTAGTACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * * * *
5117873 TTAGGCATACGGTGTTCATTCGCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAACAAGATC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATC
* * * * * * *
5117938 GGTAGAAC-TCAGAGGGGGACTC-GATCGGTCCCCGGCTTGCGCATCTCGCCACTCTGACCGGCT
66 GGTAGCACGT-AGAGGGGGACCCGGCTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
5118001 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTGCCAGTCTAAGCAT
130 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * * * * * *
5118066 ACGTAGGTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTTCAGTAGCACATGCTGGGCTCG
195 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * ** * *
5118131 GGCATGTGCTGGTGTCACATTTTTCTTCACCGGGGCACCATCGTTGGAGCATCGCCGAAGAACCT
260 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCT
* * * ** * **
5118196 AACCGGCGGTATTGGTGTTCCGGTGATC-GGGGGGTCGGGGGGTTGTGCG-ACATGATGCACGAT
325 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGAT
5118259 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
389 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
* *
5118324 CCTTAAAGAGCATTTGACATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
454 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
5118389 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTCTACA
519 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
5118454 TGCCAAGAAAAATACAAGGATCATGTCTACCAAGTTCGGGGCCAAAACTCCTTCCGAAAAAATTT
584 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * * * *
5118519 TACAAAATCTCGAGCCGTAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTCGACTTGCCA
649 TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
5118584 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
714 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
5118649 CATGCAGAAATATGAAGATGTGCTTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATC
779 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * *
5118714 CCGCCTCTCTGGCCGGCGTAGTACCCGCCTGCCCGTCCGCTCGTTTTGTCGGTTGGT
844 CCGTCTCTCTGGCCGGCGTAGTACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * * *
5118771 TTAGGCATACAGAGTTCATTCCTAGTCTAAGATTGGACCGAACTGAGGGTTGTGGTAGTAGGATC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATC
* *
5118836 GGTAGCACGTAGAGGGGGACCCGGCT-GATCCCCGGCTTGCGCATGCCGCCCCTCTGGTCGGCTG
66 GGTAGCACGTAGAGGGGGACCCGGCTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * *
5118900 AGCGCTCGCGCGCTCATTTCGTGAGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATA
131 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * *
5118965 TGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATCCTAGGCTCGG
196 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* * * * *
5119030 GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAACACCGAAAAACCTG
261 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
*
5119095 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
326 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* * * * **
5119160 CTGCTGGTACTTGACCGTAATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCATGCCCCC
391 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
*
5119225 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGT-TCGAAATGGGGA
456 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGA
* *
5119289 CACTTTTTTCAAATGGTCAC-AAATTTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCAT
520 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
5119353 CCCAACAAAAATACAAGGATCACGTCTACCAAGTTGGGGGCCAAAAATCCTTCCAAAAAAATTTT
585 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * *
5119418 AAAATATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTGTTGCCAT
650 AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
5119483 GAAACTTCACTTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
715 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** * *
5119548 ACACATAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGCATCC
780 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
5119613 CGTCACTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCATCGGTTGGC
845 CGTCTCTCTGGCCGGCGTAGTACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * ** *
5119669 TTAGGCATATGAAGTTCATTCCCAGTCTAAGATCAGG-CC-AGACCGAGGGTTGTAGCAGTAGGA
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCGA-ACCGAGGGTTGCGGCAGCAGGA
** * * * *
5119732 TCGACAGCACGCAGAGGGGGACCCGG-TCGATCCCTGACTTGCGCATCCCGCCCCTCTGGTCGGC
64 TCGGTAGCACGTAGAGGGGGACCCGGCTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
5119796 TGAGCGCCCGCACGCTCGTTTCGTGGGCTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCA
129 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * ** *
5119861 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAAAGTTGCGACAGCACATGCTGGGCTC
194 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * *
5119926 AGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCAT-GTCGGAGCATCGTCTGAGAACC
259 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* * * *
5119990 TGACCGACGGCATT-GGGTTCC-AGCGATTGGGAGGGCCGGGGGGTGTGCACACATGATGTGCGA
324 TGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
5120053 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACC
388 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
*
5120118 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGG
453 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* **
5120183 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTAAGC
518 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
5120248 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAAATCCTTCTGAAAAAATT
583 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
** * *
5120313 TTAAAAAATC-CTGAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
648 TTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * * *
5120377 CATGGAACTTCACGTGAAGGCTTAAGGGACCATTGGATAAATTTACAAGCAATAAAAATGGCATT
712 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*** *
5120442 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCA
777 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
5120507 TCCCGTCTCTCTGGCCGGTGTAGTGCCCACCCGCCCGCCCGCCCGCTTGTTTCGTTGGTTGGC
842 TCCCGTCTCTCTGGCCGGCGTAGT----ACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * ** *
5120570 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGTAGGATC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATC
* * * * *
5120635 GGTAGCACGTAGAGGGGGACCCGGC-CGATCCTCAGCTTACGCATCCCACCCCTCTGGTCGGCTG
66 GGTAGCACGTAGAGGGGGACCCGGCTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
5120699 AGCGCCCGCACGCT-AGATTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCAT
131 AGCGCCCGCACGCTCA-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * ** *
5120763 GCGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTTATTC
195 ACGGAGTTCATTCCCAGTCTAAG-AT-CG--G---A---CCAG----A-C---CG-AGGGT-TGC
* * * **
5120828 -CCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGTAGCACATGCTGGGCTCAAGCATGTGCTGG
240 GGCAG-C----A-C--AT--G--C-TGGGCT-CGG--GCATGTGCT-GG-T---GC---------
* * * *
5120892 TGCCGCATTTTTCTTCGCCAGGGCACCATCGTTGGAGCATCGCCGGAGAACCTGACCGGCAGCAT
275 ---CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCAT
** ** * *
5120957 TGGGGTTCCGGTGATCGGAAGGGCCGGGGGGAGGGGTGTGAGCACATGATGTGCGAAGGGTGCTG
337 TGGGGTTCCGACGATCGG--GGG--GGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* **
5121022 GTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACTGCCTTAAAG
397 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG
*
5121087 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTT
462 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
5121152 TTTAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTTGCTGAATTTTTTTTTGCATGCCAACA
527 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
*
5121217 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAATAAT
592 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* ** * * * *
5121282 CTCAAATTGCAAAACGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTT
657 CTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * **
5121347 CGCGTGAAGGCTTAAGGGACCATTTTATGAATTTACAGGTAATAAAAATGGCATTGGCATGCAGA
722 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* *
5121412 AATATGAAGATGTGCATAAACCCACCTACTACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
787 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * *
5121477 CTGGCCGAC---GTA-CTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGC
852 CTGGCCGGCGTAGTACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * *
5121522 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGAACTGAAGGTTACGGCTGCAGGAT-
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATC
* * *
5121586 GGATAGCACGCAGAGAGGGACCCGG-TCGATCCCCGGCTTGCGCATCCCTCCCCTCTGGCCGGCT
66 GG-TAGCACGTAGAGGGGGACCCGGCTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
5121650 GGGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
130 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* ** ** ** * *
5121715 ATGGAGTTCATTCCCAGTCTAAGATCAAACTGGATTGAGGGCTACGGCAGCACATGCTGGGCTCG
195 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* *
5121780 GGCATGTGCTGGTGCCGCGTTTTTCTTCGCCGGGG---CA-C-T------ATCGCCGGAGAACCT
260 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCT
*
5121834 GACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGAGAGGGTGTGCGCACATGATGTGC
325 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC--GG-G-GGGTGTGCGCACATGATGTGC
* * * *
5121899 GATGGGTACTAGTACATGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTTGAGAACTCACA
386 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* * *
5121964 CCCCCTTAAAGAGCATTTGTGATTTTACAGGTTTGCTGCCAGTAGCTATTAGAGTGTCTGAAATG
451 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
5122029 GGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
516 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * *
5122094 GCATGCCAAAAAAAATATAGGGATCACTTCTACTAAGTTTGGGGCCAAAACTCCTTCCCAAAAAA
581 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* ** *
5122159 TTTTAAAAAATCTCGAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTG
646 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
5122224 CCATG-------A----AA--CTT----GA--ATT-TA-G-------AAGCCATAAAAATGGCAT
711 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * **
5122261 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTCGCTT
776 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
5122326 ATCCCGTCTCTATGGCCGGCGTAGT----GCCCGCCCGCCCGCTCGTTTCGTTGGTTGGC
841 ATCCCGTCTCTCTGGCCGGCGTAGTACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * *
5122382 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACTAGACTGAGGGTTACAGCAGCAAGAT
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCAGGAT
*** ** *
5122446 CGGTAGCATACAGAGGGGGACCCGGC-CGATCCCCGGCTTGCGCATCCCATCCCTCTGGCTGGCT
65 CGGTAGCACGTAGAGGGGGACCCGGCTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
5122510 GAGCGCTCGCTCGCTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
130 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * *** *
5122575 ATGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGCCACGGCAGCACATGCTGGGCTTG
195 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * *
5122640 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATTGCCGGAGCATCGCCGGAGAACCT
260 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCT
* *
5122705 GACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGAT
325 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGAT
* *
5122770 GGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCC
389 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
*
5122835 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGG
454 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
5122900 ACACTTTTTTCAAATGGTCACAAAATTTTGTACACTTCGAGATTTTAGCTGAATTTTTTTGTGCA
519 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
5122965 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTGGGGGCCAAAAATCCTTCCGAAAAAATTT
584 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
*
5123030 T-AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
649 TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
5123094 TGAAACTTCACAG-GAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTA
714 TGAAACTTCAC-GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * * * *
5123158 CCATGCAGAAATATAAAGATGTGCCTAAGCCCACCTGCCACGCTATCGATCCACAGCTTGTGCAT
778 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * *
5123223 CCCGACACTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTTGTTTCATCGGTTGGC
843 CCCGTCTCTCTGGCCGGCGTAGTACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
** * * *
5123281 TT-GTTATACGGAGTTCATTCCCAGTCTAAGAGCGGACCGGACCGAGGGTT-CGGCAGTAGGATC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATC
** * *
5123344 GACAGCACGTAGAGGGGGACCCGGC-CGATCCCCGGCTTGCGCATCCCGTCCCTCTGGCTGGCTG
66 GGTAGCACGTAGAGGGGGACCCGGCTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
5123408 AGCGCTCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATA
131 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * ** * *
5123473 TGGAGTTCATTCCCATTCTAAGATCGGACCAGACCGAGGGCCGCAGCAGTACATGCTGGGCTCGG
196 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* *
5123538 GCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATTGTCGGAGCATC-CCGGAGAACCTG
261 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
** * * *
5123602 ACTAGCGGTATTGGGGTTCTGACGATC-GGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATG
326 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATG
5123666 GGTGCTGGTAC
390 GGTGCTGGTAC
5123677 GGAGTTCATT
Statistics
Matches: 7391, Mismatches: 865, Indels: 430
0.85 0.10 0.05
Matches are distributed among these distances:
859 3 0.00
860 374 0.05
861 2 0.00
863 4 0.00
867 61 0.01
868 266 0.04
869 4 0.00
870 3 0.00
871 52 0.01
874 1 0.00
875 9 0.00
876 53 0.01
877 2 0.00
878 2 0.00
879 4 0.00
880 179 0.02
882 5 0.00
883 1 0.00
884 4 0.00
885 3 0.00
886 7 0.00
887 163 0.02
888 776 0.10
889 45 0.01
890 719 0.10
891 60 0.01
892 6 0.00
894 535 0.07
895 146 0.02
896 225 0.03
897 572 0.08
898 932 0.13
899 207 0.03
900 480 0.06
901 398 0.05
902 121 0.02
903 75 0.01
905 15 0.00
906 52 0.01
908 1 0.00
911 3 0.00
912 2 0.00
915 2 0.00
916 3 0.00
917 7 0.00
919 4 0.00
920 9 0.00
921 4 0.00
923 1 0.00
925 3 0.00
926 1 0.00
927 1 0.00
928 3 0.00
930 1 0.00
932 4 0.00
933 9 0.00
934 3 0.00
936 7 0.00
937 2 0.00
938 2 0.00
941 2 0.00
942 2 0.00
945 1 0.00
950 1 0.00
951 4 0.00
952 215 0.03
953 24 0.00
954 31 0.00
955 12 0.00
957 4 0.00
959 4 0.00
960 452 0.06
961 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (900 bp):
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATC
GGTAGCACGTAGAGGGGGACCCGGCTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
AAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGGCGTAGTACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
Found at i:5119868 original size:26 final size:26
Alignment explanation
Indices: 5119832--5119884 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5119822 GCTGACTTAG
5119832 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
5119858 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
5119884 G
1 G
5119885 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:5120770 original size:26 final size:26
Alignment explanation
Indices: 5120733--5120837 Score: 174
Period size: 26 Copynumber: 4.0 Consensus size: 26
5120723 GTTGACTTAG
* *
5120733 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5120759 GCATGCGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5120785 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5120811 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5120837 G
1 G
5120838 ATCGGATCAG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5121721 original size:26 final size:26
Alignment explanation
Indices: 5121685--5121737 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5121675 GTTGACTTAG
5121685 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5121711 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5121737 G
1 G
5121738 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5122581 original size:26 final size:26
Alignment explanation
Indices: 5122545--5122597 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5122535 GTTGACTTAG
*
5122545 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
5122571 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5122597 G
1 G
5122598 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5123478 original size:26 final size:26
Alignment explanation
Indices: 5123442--5123494 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5123432 GTTGACTTAG
*
5123442 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
5123468 GCATATGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5123494 G
1 G
5123495 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5123850 original size:26 final size:26
Alignment explanation
Indices: 5123820--5123898 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 26
5123810 GTTGACTTAG
*
5123820 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
5123846 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* * * *
5123872 GCATACGAAGTTTATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5123898 G
1 G
5123899 ATCGGATAGG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Done.