Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 38 of 129
Found at i:5127156 original size:26 final size:26
Alignment explanation
Indices: 5127120--5127172 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5127110 GTTGACTTTG
5127120 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5127146 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5127172 G
1 G
5127173 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5128203 original size:706 final size:711
Alignment explanation
Indices: 5127146--5128472 Score: 1995
Period size: 706 Copynumber: 1.9 Consensus size: 711
5127136 CCCAGTCTAA
* * *
5127146 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTACGGTAGCACGTGCTAGG
1 GCATACGGAGTTCATTCCCACTCTAAGATCAAACCAGACCGAGGGTTACGGTAGCACATGCTAGG
* *
5127211 CTCTGGCATGTGCTGGTACCAAATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGA
66 CTCAGGCATGTGCTGGTACCAAATTTTTCTTCGCCGGGGCACCAT--CC-G-GCA-CA-C-GAGA
* * * * *
5127276 ACCTGACCAGCGGCATTGGGATTCTGACGATCGGGGGGGTCGGGGGGTGTGCGCACATCATGGGT
124 ACATGACCAGCGGCATTGGGATTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATCATGGGC
* * *
5127341 GATGGGTGCTGGTACCTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAACTCACA
189 AATGGGTGCTGGTACCTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACA
* *
5127406 CCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATG
254 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATG
5127471 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTG
319 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TTTTTTTG
*
5127536 TGCATG-CAACAAAAAT-CAGGGATCACGTCTACCAAGTTTAGAGCCAAAACTCCATCCAAAAAA
383 TGCATGCCAACAAAAATGCAAGGATCACGTCTACCAAGTTTAGAGCCAAAACTCCATCCAAAAAA
*
5127599 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAAAAAACGAGTCGTCTT
448 ATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAAAAAACGAGTCGTCTT
* *
5127664 G-GCATGAAAGTTCACGTGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGC
513 GTG-ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGC
5127728 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
577 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
5127793 GCATCCCGTCTCTCTGGCCAGCGTAGTGCCCACCCGCCCGCCCGCCCACTCGTTTCATCGGTTGG
642 GCATCCCGTCTCTCTGGCCAGCGTAGTGCCCACCCGCCCGCCCGCCCACTCGTTTCATCGGTTGG
5127858 CTTAG
707 CTTAG
*** * *
5127863 GCATACGGAGTTCATTCCCACTCTAAGATTGGACC-GAACCGAGGGTTGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCACTCTAAGATCAAACCAG-ACCGAGGGTTACGGTAGCACATGCTAG
* **
5127927 GCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCAT-C-GC-CA-GAGAACATGA
65 GCTCAGGCATGTGCTGGTACCAAATTTTTCTTCGCCGGGGCACCATCCGGCACACGAGAACATGA
* * * * * *
5127988 CCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCAATTGG
130 CCAGCGGCATTGGGATTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATCATGGGCAATGGG
* * * *
5128053 TGCTGGTACTTGGCACTTATATTGGCCCCCTATCCTTCATCCAACCTCGAGAACTCACACCCCCT
195 TGCTGGTACCTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCCCT
*
5128118 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
*
5128183 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTTGTGCATGC
325 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * * * **
5128248 CAACAGAAATGCAAGGATCATGTCTACTAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA
390 CAACAAAAATGCAAGGATCACGTCTACCAAGTTTAGAGCCAAAACTCCATCCAAAAAAATTTTAA
* * * * *
5128313 AAAATCCCAAACCGCCAAGAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGTGATGA
455 AAAATCCCAAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAAAAAACGAGTCGTCTTGTGATGA
* * *
5128378 AACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
520 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCAC
**
5128443 GTAGAAATATGAAGATGTGCCTAAACCCAC
585 ACAGAAATATGAAGATGTGCCTAAACCCAC
5128473 TGTCATAACG
Statistics
Matches: 549, Mismatches: 57, Indels: 18
0.88 0.09 0.03
Matches are distributed among these distances:
705 14 0.03
706 242 0.44
707 191 0.35
708 1 0.00
709 2 0.00
711 2 0.00
714 1 0.00
716 1 0.00
717 95 0.17
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (711 bp):
GCATACGGAGTTCATTCCCACTCTAAGATCAAACCAGACCGAGGGTTACGGTAGCACATGCTAGG
CTCAGGCATGTGCTGGTACCAAATTTTTCTTCGCCGGGGCACCATCCGGCACACGAGAACATGAC
CAGCGGCATTGGGATTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATCATGGGCAATGGGT
GCTGGTACCTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AACAAAAATGCAAGGATCACGTCTACCAAGTTTAGAGCCAAAACTCCATCCAAAAAAATTTTAAA
AAATCCCAAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAAAAAACGAGTCGTCTTGTGATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCACA
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCAGCGTAGTGCCCACCCGCCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAG
Found at i:5128813 original size:57 final size:58
Alignment explanation
Indices: 5128751--5129148 Score: 518
Period size: 57 Copynumber: 6.7 Consensus size: 58
5128741 TCTTGTGTAG
*
5128751 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTG-AAATTTATTTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTTATTTTTAA
*
5128808 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTTATTTTTAA
* *
5128865 GGAAAATTGATACTTTCAACTTTTCCAC-AAAAATATTTTTTTGGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTT-GAAAATTT-ATTTTTAA
* **
5128925 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCAAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTTGAAAATTTATTTTTAA
*
5128984 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAATCCCTTTTTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAA------TATTTTTTTGAAAATTTATTTTTAA
* * * *
5129048 GGAAAATGGATACTTTCAACTTTTTCCTAAAAATA-TTTTTCGAAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAA-TTT-ATTTTTAA
* *
5129107 GGAAGATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT
5129149 TGGAACTTTT
Statistics
Matches: 303, Mismatches: 20, Indels: 33
0.85 0.06 0.09
Matches are distributed among these distances:
56 7 0.02
57 91 0.30
58 13 0.04
59 80 0.26
60 52 0.17
61 7 0.02
64 49 0.16
65 4 0.01
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTTATTTTTAA
Found at i:5129109 original size:123 final size:117
Alignment explanation
Indices: 5128751--5129150 Score: 526
Period size: 123 Copynumber: 3.4 Consensus size: 117
5128741 TCTTGTGTAG
*
5128751 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAA-TA-TTTTTTTG-AAATTTATTTTTTAGGAA
1 GGAAAATTGATACTTTCAACTTTTCCAC-AAAAATTATTTTTTTTGAAAATTTATTTTTAAGGAA
* *
5128812 AATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
65 AATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAATTTATTTTCAA
* * *
5128865 GGAAAATTGATACTTTCAACTTTTCCACAAAAA-TATTTTTTTGGAAATTTTGATTTTCAAGGAA
1 GGAAAATTGATACTTTCAACTTTTCCACAAAAATTATTTTTTTTGAAAATTT-ATTTTTAAGGAA
*
5128929 AATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTA-TTTCAAA
65 AATTGATACTTTCAACTTTTCCCTAAAAATA--TTTTTTGAAAATTTATTTTC-AA
* *
5128984 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTTTTTTGAAAATTTATTTTTAAG
1 GGAAAATTGATACTTTCAACTTTTCCACAAAAA----TTATTTTTTTTGAAAATTTATTTTTAAG
* * *
5129049 GAAAATGGATACTTTCAACTTTTTCCTAAAAATATTTTTCGAAAATTTTGATTTTCAA
62 GAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAA-TTT-ATTTTCAA
* *
5129107 GGAAGATTGATACTTTCAACTTTTCCCCAAAAA-TATTTTTTTTG
1 GGAAAATTGATACTTTCAACTTTTCCACAAAAATTATTTTTTTTG
5129151 GAACTTTTGA
Statistics
Matches: 252, Mismatches: 19, Indels: 26
0.85 0.06 0.09
Matches are distributed among these distances:
114 33 0.13
115 8 0.03
116 5 0.02
117 40 0.16
118 13 0.05
119 48 0.19
121 10 0.04
122 3 0.01
123 73 0.29
124 19 0.08
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.45
Consensus pattern (117 bp):
GGAAAATTGATACTTTCAACTTTTCCACAAAAATTATTTTTTTTGAAAATTTATTTTTAAGGAAA
ATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAATTTATTTTCAA
Found at i:5129210 original size:16 final size:16
Alignment explanation
Indices: 5129187--5129247 Score: 70
Period size: 16 Copynumber: 3.8 Consensus size: 16
5129177 ATAGAATAAT
*
5129187 AAAA-AAATAAAAGTG
1 AAAATAAATAAAAGTA
*
5129202 AAAATAAATAAAAATA
1 AAAATAAATAAAAGTA
*
5129218 AAAATAAAGAAAAGTA
1 AAAATAAATAAAAGTA
*
5129234 AAACAAAAATAAAA
1 AAA-ATAAATAAAA
5129248 ATAAGATAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
15 4 0.11
16 26 0.68
17 8 0.21
ACGTcount: A:0.79, C:0.02, G:0.07, T:0.13
Consensus pattern (16 bp):
AAAATAAATAAAAGTA
Found at i:5129216 original size:6 final size:6
Alignment explanation
Indices: 5129189--5129265 Score: 52
Period size: 6 Copynumber: 12.8 Consensus size: 6
5129179 AGAATAATAA
* * * *
5129189 AAAAAT AAAAGT GAAAAT --AAAT AAAAAT AAAAAT AAAGAAA AGTAAAAC
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAA-AAT A--AAAAT
* *
5129238 AAAAAT AAAAAT -AAGAT AAAGAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
5129266 ATATTAAATA
Statistics
Matches: 57, Mismatches: 8, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
4 4 0.07
5 4 0.07
6 41 0.72
7 3 0.05
8 3 0.05
9 2 0.04
ACGTcount: A:0.77, C:0.01, G:0.08, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:5129226 original size:27 final size:25
Alignment explanation
Indices: 5129170--5129251 Score: 85
Period size: 27 Copynumber: 3.1 Consensus size: 25
5129160 ATTTTTATTC
*
5129170 AAAGAAAATAGAATAATAA-AAAAAT
1 AAAGAAAATA-AATAAAAATAAAAAT
5129195 AAAAGTGAAAATAAATAAAAATAAAAAT
1 -AAA--GAAAATAAATAAAAATAAAAAT
*
5129223 AAAGAAAAGTAAAACAAAAATAAAAAT
1 AAAGAAAA-T-AAATAAAAATAAAAAT
5129250 AA
1 AA
5129252 GATAAAGATA
Statistics
Matches: 49, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
25 5 0.10
26 4 0.08
27 27 0.55
28 13 0.27
ACGTcount: A:0.77, C:0.01, G:0.07, T:0.15
Consensus pattern (25 bp):
AAAGAAAATAAATAAAAATAAAAAT
Found at i:5129256 original size:11 final size:11
Alignment explanation
Indices: 5129189--5129264 Score: 59
Period size: 11 Copynumber: 6.9 Consensus size: 11
5129179 AGAATAATAA
5129189 AAAAATAAAAGT
1 AAAAATAAAA-T
*
5129201 GAAAAT-AAAT
1 AAAAATAAAAT
5129211 AAAAATAAAAAT
1 AAAAAT-AAAAT
* *
5129223 AAAGA-AAAGT
1 AAAAATAAAAT
5129233 AAAACA-AAAAT
1 AAAA-ATAAAAT
*
5129244 AAAAATAAGAT
1 AAAAATAAAAT
*
5129255 AAAGATAAAA
1 AAAAATAAAA
5129265 AATATTAAAT
Statistics
Matches: 51, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
10 14 0.27
11 24 0.47
12 13 0.25
ACGTcount: A:0.76, C:0.01, G:0.08, T:0.14
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:5129258 original size:27 final size:28
Alignment explanation
Indices: 5129211--5129264 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
5129201 GAAAATAAAT
5129211 AAAAATAAAAATAAAGAAAAG-TAAAAC
1 AAAAATAAAAATAAAGAAAAGATAAAAC
5129238 AAAAATAAAAAT-AAGATAAAGATAAAA
1 AAAAATAAAAATAAAGA-AAAGATAAAA
5129265 AATATTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 4 0.16
27 16 0.64
28 5 0.20
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.13
Consensus pattern (28 bp):
AAAAATAAAAATAAAGAAAAGATAAAAC
Found at i:5129294 original size:4 final size:4
Alignment explanation
Indices: 5129287--5129344 Score: 66
Period size: 4 Copynumber: 14.8 Consensus size: 4
5129277 AACCTAATCT
* * *
5129287 AATA AATA TAA-A AACA AATA AATA AACA AATA AATA AACA AATA AATA
1 AATA AATA -AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA
5129335 AATA AA-A AAT
1 AATA AATA AAT
5129345 CTGGAGCGGC
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
3 5 0.11
4 39 0.85
5 2 0.04
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.19
Consensus pattern (4 bp):
AATA
Found at i:5129313 original size:12 final size:12
Alignment explanation
Indices: 5129298--5129336 Score: 78
Period size: 12 Copynumber: 3.2 Consensus size: 12
5129288 ATAAATATAA
5129298 AAACAAATAAAT
1 AAACAAATAAAT
5129310 AAACAAATAAAT
1 AAACAAATAAAT
5129322 AAACAAATAAAT
1 AAACAAATAAAT
5129334 AAA
1 AAA
5129337 TAAAAAATCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (12 bp):
AAACAAATAAAT
Found at i:5130230 original size:21 final size:22
Alignment explanation
Indices: 5130194--5130235 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
5130184 AATTAGAGAA
*
5130194 GATAATAAAAAAAATATTATAG
1 GATAATAAAAAAAATAATATAG
*
5130216 GATAA-AAAAATAATAATATA
1 GATAATAAAAAAAATAATATA
5130236 TAATTAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (22 bp):
GATAATAAAAAAAATAATATAG
Found at i:5130238 original size:18 final size:17
Alignment explanation
Indices: 5130217--5130285 Score: 63
Period size: 18 Copynumber: 4.1 Consensus size: 17
5130207 ATATTATAGG
5130217 ATAAAAAAAT-AATAATA
1 ATAAAAAAATAAATAA-A
**
5130234 TATAATTAAATAAATAAAA
1 -ATAAAAAAATAAAT-AAA
*
5130253 ATACAAAAATAAATAAA
1 ATAAAAAAATAAATAAA
5130270 AT-AAAAAAT-AATAAA
1 ATAAAAAAATAAATAAA
5130285 A
1 A
5130286 AATATATATT
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
15 7 0.16
16 6 0.14
17 5 0.12
18 19 0.44
19 4 0.09
20 2 0.05
ACGTcount: A:0.75, C:0.01, G:0.00, T:0.23
Consensus pattern (17 bp):
ATAAAAAAATAAATAAA
Found at i:5130246 original size:8 final size:8
Alignment explanation
Indices: 5130217--5130320 Score: 57
Period size: 7 Copynumber: 13.9 Consensus size: 8
5130207 ATATTATAGG
*
5130217 ATAAAAAA
1 ATAAATAA
5130225 AT-AAT-A
1 ATAAATAA
*
5130231 ATATATAA
1 ATAAATAA
*
5130239 TTAAATAA
1 ATAAATAA
5130247 AT-AA-AA
1 ATAAATAA
5130253 ATACAA-AA
1 ATA-AATAA
5130261 ATAAATAAA
1 ATAAAT-AA
5130270 ATAAA-AA
1 ATAAATAA
5130277 AT-AATAA
1 ATAAATAA
*
5130284 A-AAATAT
1 ATAAATAA
* *
5130291 ATATTATTA
1 ATA-AATAA
5130300 AT-AATAA
1 ATAAATAA
5130307 ATAAAT-A
1 ATAAATAA
5130314 ATAAATA
1 ATAAATA
5130321 CATAGGATAT
Statistics
Matches: 73, Mismatches: 11, Indels: 24
0.68 0.10 0.22
Matches are distributed among these distances:
6 9 0.12
7 32 0.44
8 21 0.29
9 11 0.15
ACGTcount: A:0.71, C:0.01, G:0.00, T:0.28
Consensus pattern (8 bp):
ATAAATAA
Found at i:5130249 original size:4 final size:4
Alignment explanation
Indices: 5130217--5130320 Score: 57
Period size: 4 Copynumber: 27.8 Consensus size: 4
5130207 ATATTATAGG
* * *
5130217 ATAA AAAA AT-A AT-A ATAT ATAA TTAA ATAA AT-A A-AA ATACA A-AA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATA-A ATAA
* * *
5130261 ATAA ATAAA ATAA A-AA AT-A ATAA A-AA ATAT ATATT ATTA AT-A ATAA
1 ATAA AT-AA ATAA ATAA ATAA ATAA ATAA ATAA ATA-A ATAA ATAA ATAA
5130307 ATAA AT-A ATAA ATA
1 ATAA ATAA ATAA ATA
5130321 CATAGGATAT
Statistics
Matches: 79, Mismatches: 9, Indels: 24
0.71 0.08 0.21
Matches are distributed among these distances:
3 27 0.34
4 43 0.54
5 9 0.11
ACGTcount: A:0.71, C:0.01, G:0.00, T:0.28
Consensus pattern (4 bp):
ATAA
Found at i:5130251 original size:30 final size:30
Alignment explanation
Indices: 5130217--5130317 Score: 86
Period size: 30 Copynumber: 3.5 Consensus size: 30
5130207 ATATTATAGG
5130217 ATAAAAAAATAATAATATATAATTAAATAA
1 ATAAAAAAATAATAATATATAATTAAATAA
* * * * *
5130247 ATAAAAATACAAAAATAAATAAAATAAA-AA
1 ATAAAAAAATAATAATATAT-AATTAAATAA
* *
5130277 ATAATAAAA-AAT-ATATATTATT-AAT-A
1 ATAAAAAAATAATAATATATAATTAAATAA
*
5130303 ATAAATAAATAATAA
1 ATAAAAAAATAATAA
5130318 ATACATAGGA
Statistics
Matches: 54, Mismatches: 13, Indels: 10
0.70 0.17 0.13
Matches are distributed among these distances:
26 10 0.19
27 5 0.09
28 6 0.11
29 2 0.04
30 25 0.46
31 6 0.11
ACGTcount: A:0.71, C:0.01, G:0.00, T:0.28
Consensus pattern (30 bp):
ATAAAAAAATAATAATATATAATTAAATAA
Found at i:5130252 original size:27 final size:27
Alignment explanation
Indices: 5130217--5130317 Score: 66
Period size: 28 Copynumber: 3.6 Consensus size: 27
5130207 ATATTATAGG
5130217 ATAAA-AAAATAATAATATATAATTAA
1 ATAAATAAAATAATAATATATAATTAA
* *
5130243 ATAAATAAAAATACA-AAAATA-AATAAA
1 ATAAAT-AAAATA-ATAATATATAATTAA
* *
5130270 ATAAAAAATAATAAAAAATATATATTATTAATA
1 ATAAATAA-AAT-AATAATATATA--ATT-A-A
5130303 ATAAAT-AAATAATAA
1 ATAAATAAAATAATAA
5130318 ATACATAGGA
Statistics
Matches: 57, Mismatches: 7, Indels: 18
0.70 0.09 0.22
Matches are distributed among these distances:
26 7 0.12
27 14 0.25
28 17 0.30
29 2 0.04
30 4 0.07
31 5 0.09
32 2 0.04
33 6 0.11
ACGTcount: A:0.71, C:0.01, G:0.00, T:0.28
Consensus pattern (27 bp):
ATAAATAAAATAATAATATATAATTAA
Found at i:5130358 original size:6 final size:6
Alignment explanation
Indices: 5130335--5130369 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
5130325 GGATATACAT
5130335 AAAATA TAAAAT- AAAATA AAAATA AAAATA AAAAT
1 AAAATA -AAAATA AAAATA AAAATA AAAATA AAAAT
5130370 GACAAAGATA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.19
6 17 0.63
7 5 0.19
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
AAAATA
Found at i:5130688 original size:123 final size:122
Alignment explanation
Indices: 5130558--5130893 Score: 466
Period size: 123 Copynumber: 2.7 Consensus size: 122
5130548 TTTTTTTACC
* * * *
5130558 CAAAGCTCCTTTAAACAGAGGTTCAACGACTTTAAGAAACATAAATAAAGCTCCTCTAAATAGAG
1 CAAAGCTCCTCTAAGCAGAGGTTCAATGACTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAG
*
5130623 GTAACTTTTTTCATTT-TTTTGCTTTTT-TTGTTTTTT-TTTACTT-TTTTTTTAAATTGAT
66 GCAACTTTTTT--TTTGTTTT--TTTTTGTTGTTTTTTGTTTACTTGTTTTTTTAAA-TGAT
* *
5130681 CAAAGCTCCTCTAAGCAGAGGTTCAATGACTTTGAGAAACATAAACAAAGCTCTTCTAAATAGAG
1 CAAAGCTCCTCTAAGCAGAGGTTCAATGACTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAG
* **
5130746 GCAA-TTTTTTTTTGTTTTTTTTTGTTTTTTTTTGTTTTTTTGTTTTTTTAAATGAT
66 GCAACTTTTTTTTTGTTTTTTTTTGTTGTTTTTTGTTTACTTGTTTTTTTAAATGAT
*
5130802 CAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAGAAACATAAATGAAAGCTCCTCTCAAATAG
1 CAAAGCTCCTCTAAGCAGAGGTTCAATGACTTTGAGAAACATAAAT-AAAGCTCCTCT-AAATAG
5130867 AGGCAACTTTTTTTTTTGTTTTTTTTT
64 AGGCAAC-TTTTTTTTTGTTTTTTTTT
5130894 TTTTTAAAGC
Statistics
Matches: 192, Mismatches: 13, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
119 5 0.03
120 11 0.06
121 57 0.30
122 26 0.14
123 74 0.39
125 19 0.10
ACGTcount: A:0.29, C:0.14, G:0.13, T:0.44
Consensus pattern (122 bp):
CAAAGCTCCTCTAAGCAGAGGTTCAATGACTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAG
GCAACTTTTTTTTTGTTTTTTTTTGTTGTTTTTTGTTTACTTGTTTTTTTAAATGAT
Found at i:5130756 original size:1 final size:1
Alignment explanation
Indices: 5130750--5130794 Score: 54
Period size: 1 Copynumber: 45.0 Consensus size: 1
5130740 ATAGAGGCAA
* * * *
5130750 TTTTTTTTTGTTTTTTTTTGTTTTTTTTTGTTTTTTTGTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
5130795 AAATGATCAA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
1 36 1.00
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (1 bp):
T
Found at i:5130765 original size:10 final size:10
Alignment explanation
Indices: 5130750--5130794 Score: 76
Period size: 10 Copynumber: 4.7 Consensus size: 10
5130740 ATAGAGGCAA
5130750 TTTTTTTTTG
1 TTTTTTTTTG
5130760 TTTTTTTTTG
1 TTTTTTTTTG
5130770 TTTTTTTTTG
1 TTTTTTTTTG
5130780 --TTTTTTTG
1 TTTTTTTTTG
5130788 TTTTTTT
1 TTTTTTT
5130795 AAATGATCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
8 8 0.24
10 25 0.76
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:5130775 original size:20 final size:18
Alignment explanation
Indices: 5130750--5130794 Score: 72
Period size: 18 Copynumber: 2.4 Consensus size: 18
5130740 ATAGAGGCAA
5130750 TTTTTTTTTGTTTTTTTTTG
1 TTTTTTTTTG--TTTTTTTG
5130770 TTTTTTTTTGTTTTTTTG
1 TTTTTTTTTGTTTTTTTG
5130788 TTTTTTT
1 TTTTTTT
5130795 AAATGATCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 15 0.60
20 10 0.40
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (18 bp):
TTTTTTTTTGTTTTTTTG
Found at i:5131082 original size:42 final size:42
Alignment explanation
Indices: 5130902--5131368 Score: 325
Period size: 42 Copynumber: 10.7 Consensus size: 42
5130892 TTTTTTTAAA
***
5130902 GCTCCTCTAGAACAGAGGCTTGACGACTTTG-GAAAAGTAGAATT
1 GCTCCTCTA-AACAGAGGCACCACGACTTTGAG-AAAGTA-AATT
* *
5130946 GCTCCTCTAAACAGAGGGCAGCCACGGCGACTTTTCAG-AAGTAATTT
1 GCTCCTCTAAACAGA-GGCA-CCA---CGAC-TTTGAGAAAGTAAATT
* *
5130993 GCTCCTTTAAACAGAGGCACCATGACTTTG-GAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATT
5131034 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATT
* *
5131076 GCTCCTCTAAACAAAGGCACCACGACTTTTAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATT
* *** * *
5131118 GCTCCTCTAAACAGAGGCACTACGACTTTCCCCTCTAAA-TAGA-G
1 GCTCCTCTAAACAGAGGCACCACGACTTT----GAGAAAGTAAATT
* * * * * * * * **** ** ** *
5131162 GCACCACAACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTT
1 G---CTC--CTCT--AAA-CAGA-GGCACCACGACTTTGAGAAAGTA--AATT
* * * *
5131215 TCCCCTCTAAATAGAGGCACCATGACTTTG-GAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATT
5131256 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATT
* *
5131298 GCTCCTCTAAACAAAGGCACCACGACTTTTAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATT
*
5131340 GCTCCTCTAAACAGAGGCACTACGACTTT
1 GCTCCTCTAAACAGAGGCACCACGACTTT
5131369 CCCCTCTAAA
Statistics
Matches: 329, Mismatches: 67, Indels: 56
0.73 0.15 0.12
Matches are distributed among these distances:
40 1 0.00
41 68 0.21
42 159 0.48
43 9 0.03
44 19 0.06
45 10 0.03
46 11 0.03
47 19 0.06
48 12 0.04
49 7 0.02
50 4 0.01
51 3 0.01
52 2 0.01
53 5 0.02
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATT
Found at i:5131161 original size:28 final size:28
Alignment explanation
Indices: 5131121--5131174 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
5131111 GTAAATTGCT
* *
5131121 CCTCTAAACAGAGGCACTACGACTTTCC
1 CCTCTAAACAGAGGCACCACAACTTTCC
*
5131149 CCTCTAAATAGAGGCACCACAACTTT
1 CCTCTAAACAGAGGCACCACAACTTT
5131175 GGAAAGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.31, C:0.33, G:0.13, T:0.22
Consensus pattern (28 bp):
CCTCTAAACAGAGGCACCACAACTTTCC
Found at i:5131197 original size:69 final size:69
Alignment explanation
Indices: 5131079--5131284 Score: 349
Period size: 69 Copynumber: 3.0 Consensus size: 69
5131069 GTAAATTGCT
* * * *
5131079 CCTCTAAACAAAGGCACCACGACTTTTAGAAAGTAAATTGCTCCTCTAAACAGAGGCACTACGAC
1 CCTCTAAATAGAGGCACCACGAC-TTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
5131144 TTTCC
65 TTTCC
*
5131149 CCTCTAAATAGAGGCACCACAACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
1 CCTCTAAATAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
5131214 TTCC
66 TTCC
*
5131218 CCTCTAAATAGAGGCACCATGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
1 CCTCTAAATAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
5131283 TT
66 TT
5131285 GAGAAAGTAA
Statistics
Matches: 129, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
69 109 0.84
70 20 0.16
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (69 bp):
CCTCTAAATAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
TTCC
Found at i:5131230 original size:28 final size:28
Alignment explanation
Indices: 5131190--5131243 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
5131180 GTAAATTGCT
5131190 CCTCTAAACAGAGGCACCACGACTTTCC
1 CCTCTAAACAGAGGCACCACGACTTTCC
* *
5131218 CCTCTAAATAGAGGCACCATGACTTT
1 CCTCTAAACAGAGGCACCACGACTTT
5131244 GGAAAGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.30, C:0.33, G:0.15, T:0.22
Consensus pattern (28 bp):
CCTCTAAACAGAGGCACCACGACTTTCC
Found at i:5131255 original size:222 final size:222
Alignment explanation
Indices: 5131000--5131423 Score: 830
Period size: 222 Copynumber: 1.9 Consensus size: 222
5130990 TTTGCTCCTT
5131000 TAAACAGAGGCACCATGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGA
1 TAAACAGAGGCACCATGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGA
5131065 GAAAGTAAATTGCTCCTCTAAACAAAGGCACCACGACTTTTAGAAAGTAAATTGCTCCTCTAAAC
66 GAAAGTAAATTGCTCCTCTAAACAAAGGCACCACGACTTTTAGAAAGTAAATTGCTCCTCTAAAC
5131130 AGAGGCACTACGACTTTCCCCTCTAAATAGAGGCACCACAACTTTGGAAAGTAAATTGCTCCTCT
131 AGAGGCACTACGACTTTCCCCTCTAAATAGAGGCACCACAACTTTGGAAAGTAAATTGCTCCTCT
5131195 AAACAGAGGCACCACGACTTTCCCCTC
196 AAACAGAGGCACCACGACTTTCCCCTC
*
5131222 TAAATAGAGGCACCATGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGA
1 TAAACAGAGGCACCATGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGA
5131287 GAAAGTAAATTGCTCCTCTAAACAAAGGCACCACGACTTTTAGAAAGTAAATTGCTCCTCTAAAC
66 GAAAGTAAATTGCTCCTCTAAACAAAGGCACCACGACTTTTAGAAAGTAAATTGCTCCTCTAAAC
*
5131352 AGAGGCACTACGACTTTCCCCTCTAAATAGAGGCACCACAACTTTGGAAAGTAAATTGCTCCTTT
131 AGAGGCACTACGACTTTCCCCTCTAAATAGAGGCACCACAACTTTGGAAAGTAAATTGCTCCTCT
5131417 AAACAGA
196 AAACAGA
5131424 CCCCTAAAGG
Statistics
Matches: 200, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
222 200 1.00
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (222 bp):
TAAACAGAGGCACCATGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGA
GAAAGTAAATTGCTCCTCTAAACAAAGGCACCACGACTTTTAGAAAGTAAATTGCTCCTCTAAAC
AGAGGCACTACGACTTTCCCCTCTAAATAGAGGCACCACAACTTTGGAAAGTAAATTGCTCCTCT
AAACAGAGGCACCACGACTTTCCCCTC
Found at i:5131333 original size:153 final size:153
Alignment explanation
Indices: 5131149--5131504 Score: 545
Period size: 153 Copynumber: 2.3 Consensus size: 153
5131139 ACGACTTTCC
* *
5131149 CCTCTAAATAGAGGCACCACAAC-TTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
1 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
**
5131213 TTTCCCCTCTAAATAGAGGCACCATGACTTTGGAAAGTAAATTGCTCCTCTAAACAG-AGGCACC
66 TTTCCCCTCTAAATAGAGGCACCACAACTTTGGAAAGTAAATTGCTCCTCTAAACAGCAGGCACC
5131277 ACGACTTTGAGAAAGTAAATTGCT
131 ACGACTTTG-GAAAGTAAATTGCT
* * *
5131301 CCTCTAAACAAAGGCACCACGACTTTTAGAAAGTAAATTGCTCCTCTAAACAGAGGCACTACGAC
1 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
*
5131366 TTTCCCCTCTAAATAGAGGCACCACAACTTTGGAAAGTAAATTGCTCCTTTAAACAGACCCCTAA
66 TTTCCCCTCTAAATAGAGGCACCACAACTTTGGAAAGTAAATTGCTCCTCTAAACAG----C---
*
5131431 AGGCACCATGACTTTGGAAAGTAAATTGCT
124 AGGCACCACGACTTTGGAAAGTAAATTGCT
5131461 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCTCC
1 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCTCC
5131505 CTGACAATCA
Statistics
Matches: 184, Mismatches: 11, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
152 20 0.11
153 93 0.51
160 56 0.30
161 15 0.08
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (153 bp):
CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
TTTCCCCTCTAAATAGAGGCACCACAACTTTGGAAAGTAAATTGCTCCTCTAAACAGCAGGCACC
ACGACTTTGGAAAGTAAATTGCT
Found at i:5131383 original size:28 final size:28
Alignment explanation
Indices: 5131343--5131396 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
5131333 GTAAATTGCT
* *
5131343 CCTCTAAACAGAGGCACTACGACTTTCC
1 CCTCTAAACAGAGGCACCACAACTTTCC
*
5131371 CCTCTAAATAGAGGCACCACAACTTT
1 CCTCTAAACAGAGGCACCACAACTTT
5131397 GGAAAGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.31, C:0.33, G:0.13, T:0.22
Consensus pattern (28 bp):
CCTCTAAACAGAGGCACCACAACTTTCC
Found at i:5131810 original size:43 final size:42
Alignment explanation
Indices: 5131759--5131840 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 42
5131749 TTTGGCAAAC
*
5131759 TTGGAATTCATATCCAAAAA-TCTAAAGCTTTTCACTTGAATT
1 TTGGAATTCACATCCAAAAATTC-AAAGCTTTTCACTTGAATT
*
5131801 TTGGAAATTCACATCCAAAAATTCAAAGCTTTTCATTTGA
1 TTGG-AATTCACATCCAAAAATTCAAAGCTTTTCACTTGA
5131841 GTTCAAAGGC
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
42 4 0.11
43 30 0.83
44 2 0.06
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.37
Consensus pattern (42 bp):
TTGGAATTCACATCCAAAAATTCAAAGCTTTTCACTTGAATT
Found at i:5133176 original size:10 final size:9
Alignment explanation
Indices: 5133161--5133203 Score: 52
Period size: 10 Copynumber: 4.7 Consensus size: 9
5133151 TCTTTTTTCA
5133161 TTTTCTCATT
1 TTTTCTC-TT
5133171 TTTTCT-TT
1 TTTTCTCTT
5133179 TTTTCTCATT
1 TTTTCTC-TT
*
5133189 TTTTTTCTT
1 TTTTCTCTT
5133198 TTTTCT
1 TTTTCT
5133204 TTTCATCATC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
8 8 0.28
9 7 0.24
10 14 0.48
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTCTCTT
Found at i:5133198 original size:43 final size:46
Alignment explanation
Indices: 5133151--5133237 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
5133141 AATTTGAATC
5133151 TCTTTTTTCATTTTC-TCAT-TT-T-TTCTTTTTTTCTCATTTTTTT
1 TCTTTTTTC-TTTTCATCATCTTCTCTTCTTTTTTTCTCATTTTTTT
*
5133194 TCTTTTTTCTTTTCATCATCTTCTCTTTTTTTTTTCTCATTTTT
1 TCTTTTTTCTTTTCATCATCTTCTCTTCTTTTTTTCTCATTTTT
5133238 CATCCATTGT
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
42 5 0.13
43 13 0.33
44 2 0.05
45 1 0.03
46 18 0.46
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (46 bp):
TCTTTTTTCTTTTCATCATCTTCTCTTCTTTTTTTCTCATTTTTTT
Found at i:5133200 original size:18 final size:18
Alignment explanation
Indices: 5133153--5133200 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
5133143 TTTGAATCTC
*
5133153 TTTTTTCATTTTCTCATT
1 TTTTTTCTTTTTCTCATT
5133171 TTTTCTT-TTTTTCTCATT
1 TTTT-TTCTTTTTCTCATT
5133189 TTTTTTCTTTTT
1 TTTTTTCTTTTT
5133201 TCTTTTCATC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 2 0.07
18 23 0.85
19 2 0.07
ACGTcount: A:0.06, C:0.15, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTTTCTTTTTCTCATT
Found at i:5133226 original size:27 final size:25
Alignment explanation
Indices: 5133151--5133230 Score: 76
Period size: 27 Copynumber: 3.1 Consensus size: 25
5133141 AATTTGAATC
* *
5133151 TCTTTTTTCATTTTCTCATTTTTTCTT
1 TCTTTTCTCA-TTTCTC-TTTTTTTTT
5133178 T-TTTTCTCATTT-T-TTTTCTTTTT
1 TCTTTTCTCATTTCTCTTTT-TTTTT
5133201 TCTTTTCATCATCTTCTCTTTTTTTTT
1 TCTTTTC-TCAT-TTCTCTTTTTTTTT
5133228 TCT
1 TCT
5133231 CATTTTTCAT
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
22 4 0.09
23 5 0.11
24 6 0.13
25 7 0.16
26 9 0.20
27 10 0.22
28 4 0.09
ACGTcount: A:0.06, C:0.19, G:0.00, T:0.75
Consensus pattern (25 bp):
TCTTTTCTCATTTCTCTTTTTTTTT
Found at i:5133238 original size:43 final size:41
Alignment explanation
Indices: 5133151--5133237 Score: 104
Period size: 43 Copynumber: 2.0 Consensus size: 41
5133141 AATTTGAATC
5133151 TCTTTTTTCATTTTCTCATTTTTTCTTTTTTTCTCATTTTTTT
1 TCTTTTTTCATTTTCTCATTTTTTCTTTTTTTCTCA--TTTTT
*
5133194 TCTTTTTTC-TTTTCATCATCTTCTCTTTTTTTTTTCTCATTTTT
1 TCTTTTTTCATTTTC-TCAT-TT-T-TTCTTTTTTTCTCATTTTT
5133238 CATCCATTGT
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
42 5 0.13
43 13 0.33
44 7 0.18
45 1 0.03
46 13 0.33
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (41 bp):
TCTTTTTTCATTTTCTCATTTTTTCTTTTTTTCTCATTTTT
Found at i:5137957 original size:26 final size:26
Alignment explanation
Indices: 5137928--5137977 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
5137918 CCGGTCCGAT
*
5137928 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACAGGGAATGAACTCCGTAAG
5137954 CTTAGACAGGGAATGAACTCCGTA
1 CTTAGACAGGGAATGAACTCCGTA
5137978 TGTGTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTAAG
Found at i:5138882 original size:26 final size:26
Alignment explanation
Indices: 5138846--5138898 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5138836 CCGTTCCGAT
5138846 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
*
5138872 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
5138898 C
1 C
5138899 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:5139779 original size:26 final size:26
Alignment explanation
Indices: 5139750--5139802 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5139740 CTGGTCCGAT
5139750 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
5139776 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
5139802 C
1 C
5139803 GGGCCAAGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:5139992 original size:244 final size:244
Alignment explanation
Indices: 5139559--5140020 Score: 599
Period size: 244 Copynumber: 1.9 Consensus size: 244
5139549 GCCAATATAA
* * * *
5139559 GGGCCAAGTACCAGCGCCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCTCGATCGTCGG
1 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCACTAGATCGTCGG
* * * ** *
5139624 AACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAA
66 AACCACAACGCCGGCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTACCCCGGTGAAGAAAAA
* * * *
5139689 TACGGCACCAGCACATGCCTGAGAAAGGCAGGTGCTGCCGCAACCCTTGGTCTGGTCCGATCTTA
131 TACGGCACCAACACATGCCTGAGAAAGGCAGGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTA
*
5139754 GATTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGC
196 GACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGC
*
5139803 GGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCAC-AGATCGTCGG
1 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCACTAGATCGTCGG
** ** **
5139867 AACCATGACGCCGGCGGTCAGGTTCT-CTTTCCGATGCTCCGACGATGGTACCTTGGTGAAGAAA
66 AACCACAACGCCGGCGGTCAGGTTCTCCGGT--GATGCTCCGACGATGGTACCCCGGTGAAGAAA
** ** ** *
5139931 AATGTGGTGCCAACACATGCGC-GAGCCCA-GCATGTGCTACCGCAACCCTCGGTCCGGTCCGAT
129 AATACGGCACCAACACATGC-CTGAG-AAAGGCAGGTGCTACCGCAACCCTCGGTCCGGTCCGAT
5139994 CTTAGACTGGGAATGAACTCCGTATGC
192 CTTAGACTGGGAATGAACTCCGTATGC
5140021 CTAAGTCAAC
Statistics
Matches: 185, Mismatches: 29, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
242 2 0.01
243 30 0.16
244 151 0.82
245 2 0.01
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19
Consensus pattern (244 bp):
GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCACTAGATCGTCGG
AACCACAACGCCGGCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTACCCCGGTGAAGAAAAA
TACGGCACCAACACATGCCTGAGAAAGGCAGGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTA
GACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGC
Found at i:5142670 original size:26 final size:26
Alignment explanation
Indices: 5142634--5142686 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5142624 CTGGTCCGAT
5142634 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
5142660 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
5142686 C
1 C
5142687 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:5143145 original size:892 final size:889
Alignment explanation
Indices: 5139994--5145501 Score: 7297
Period size: 892 Copynumber: 6.2 Consensus size: 889
5139984 CCGGTCCGAT
* * *
5139994 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGTGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGTTCAGC
* * * * * **
5140059 CGGCCAGAGGGGCGGGACGTGCAA-TCGAGGATCGACCGGGTCCCCCTCTGCATGCTACCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTACC-ATCC
* * * * *
5140123 TACTGCTGCAA-CTCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 TACTACCGCAACCT-TCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * ** * **
5140187 ACCGATG-AAA-TG--ATCGGGCGGGGGGGCAGGCACTACGTTGGCCAGAAAGATGGGATGCGCA
194 ACCGATGAAAAGAGCAAGCGGGCGGGAGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCA
* * *
5140248 AGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGCCACATCTTCTTATTTCTGTGTGCCAATGCC
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCC
** *
5140313 ATTTTTATGGCTTGTAAATTCATACAATGGT-CTTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
324 AACTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
5140377 CGACTCTTTTTCTATTTTTCACAAGTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTT
389 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
** * * * * * ** * *
5140442 TTGAATGAAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTTTATTTTTTTTGGTATGCACAAA
454 TCAAAAGGAGTTTTGGACCCAAACATGGTAGACGTGATCGATGTATTTTTTTTGGCATGCACAAA
* *
5140507 AAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTAGAAAAAAGTGTCCCCATTT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA-TGTCCCCATTT
*** *
5140572 CAGACACTTTAATGGGTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
583 CAGACACTTTAATAACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGA
* * *
5140637 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACA
647 GTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* ** * * *
5140702 TCATGTGCGCACACCCCCCCGGCCCTCCGATCGTCGGAACCCCAATGCCGCTTGTAAGGCTCTTC
712 TCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCC
* ** * * *
5140767 GGCAATGGTGCCCCGACGAAGAAAAATGCAACATCCA-CACATGCCTG-GTTCCAGCATGTGCTG
777 GGTAATGGTGCCCCGGTGAAGAAAAATACGACA-CCAGCACATGCCTGAG-CCCAGCATGTGCTG
* * * *
5140830 CCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATTTG
840 CCGCAACCTTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * *
5140880 CTTAGACTGGGAATGAACTTCATATGCCTAAGTAAACCCACGAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGTTCAGC
* * * * * * *** * * ***
5140945 TGGCCAGAGAGGCGGAATGTGTAAGCTGGGGATCAATCGGGTCTCCCTCTGCGTGCTGTGGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCT-ACCATCC
* ** * *
5141010 TGCT-GTGACAACCCTC-GTCTGGTCCGATCTTAGAGTGGGAATGAACTCCGTATGCCTAAGCCA
130 TACTACCG-CAACCTTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * ** *
5141073 ACCGTTG--AA-A-CAAGCGGGCGGGCGGACGGGCACTATGCCGACCAAAGAGATGGGATACGCA
194 ACCGATGAAAAGAGCAAGCGGGCGGGAGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCA
* *
5141134 TGCCGAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCC
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCC
** * * * *
5141199 ATTTTTATGGGTTTTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGA
324 AACTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
5141264 CGACTCGTTTTCTATTTTTCATGATTTTTAAAACCTTTTGCGGTTCAGGATTTTTTAAAATTTTT
389 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * ** *
5141329 T-GAAAGGAGTTTTGGCCCCAAATGTGGTAGACGTGAT-GCTTGTATTTTTTTTGGCATGCACAA
454 TCAAAAGGAGTTTTGGACCCAAACATGGTAGACGTGATCG-ATGTATTTTTTTTGGCATGCACAA
* * * *
5141392 AAAAATTCAGCTAAAAACTTGATGTGTACAGGATTTTGTGACCATTCGAAAAAA-GTGCCCTCAT
518 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATGT-CCC-CAT
*
5141456 TTCAGACACTTTAATAACTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
581 TTCAGACACTTTAATAACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGT
* *
5141521 GAGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATGAGGGCCAAGTACCAGCACCAATCGCA
645 GAGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
** * * * *
5141586 TTTCATGTACGCACACCCACCCGGCCCTCCCGATCATCGGAACCCCAATGTCGCCAGTCAGGTTC
710 CATCATGTGCGCACACCCCCCCGGCCC-CCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTC
* *
5141651 TCCGGTGATGGTGCCCCGGTGAAGAAAAATACGACACCAGCACATGCTTGAGCCCAGCATGTGCT
774 TCCGGTAATGGTGCCCCGGTGAAGAAAAATACGACACCAGCACATGCCTGAGCCCAGCATGTGCT
* *
5141716 GTCGCAACCTTCGATCTAGTCCGATCTTAGACTGGGAATGAACTCCATATG
839 GCCGCAACCTTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * *
5141767 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGTTCAGC
* * *
5141832 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTTCCCCTCTGTGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTACC-ATCC
* * * **
5141897 TACTGCCGCAACCTTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGGTAA
130 TACTACCGCAACCTTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
5141962 CCGATGAAAGGAGCGAGCGGGCGGGAAGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAA
195 CCGATGAAAAGAGCAAGCGGGCGGGAGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAA
* * *
5142027 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTTTGTGTGCCAGTGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
* *
5142092 ACTTTATGGCATGTGAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
325 ACTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** *
5142157 GGTTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGAATTTTTTAAAATTTTTT
390 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *
5142222 CAAAAGGAGTTTTGGAGCCAAACATGGTATACGTGATTGATGTATTTTTTTTTTGCATGCACAAA
455 CAAAAGGAGTTTTGGACCCAAACATGGTAGACGTGATCGATGTA-TTTTTTTTGGCATGCACAAA
* *
5142287 AAAATTCAGGTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAATGTCCCCATTTC
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATGTCCCCATTTC
* *
5142352 AAACACTTTAATAACTACTCGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAG
584 AGACACTTTAATAACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG-GTGTGAG
* *
5142417 TTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATGAGGGCCAAGTACCAGCACCCATCGCATAT
648 TTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
5142482 CATGTGCGAACACCCCCCCGGCCCCCCTGATCGTCGGAACCCCAAAGTCGCCAGTCAGGTTCTCC
713 CATGTGCGCACACCCCCCCGGCCCCCC-GATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCC
*
5142547 GGTAATGGTGCCTCGGTGAAGAAAAATACGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCC
777 GGTAATGGTGCCCCGGTGAAGAAAAATACGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCC
5142612 GCAACCTTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATG
842 GCAACCTTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * *
5142660 CTTAGACTGGGAGTGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGTGTGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGTTCAGC
5142725 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTACCATCCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTACCATCCT
* *
5142790 ACTACCGCAACCTTCAGTCTGGTCCGATCTTATACTGGGAATGAACTCCGTATGCCTAAGGCAAC
131 ACTACCGCAACCTTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
*
5142855 CGATGAAAAGAGCAAGCGGGCGGGAGGGCAGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAG
196 CGATGAAAAGAGCAAGCGGGCGGGAGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
* *
5142920 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACTTCTTCATATTTCTGTGTGCCAATGCCAA
261 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCAA
* *
5142985 CTTTATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACG
326 CTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
**
5143050 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTTTGGTTCGGGATTTTTTAAAATTTTTTC
391 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * * *
5143115 AAAAGGAGTTTTGGAGCCAAACATGGTATACGTGATTGATGTATTTTTTTTTTGCATGCACAAAA
456 AAAAGGAGTTTTGGACCCAAACATGGTAGACGTGATCGATGTA-TTTTTTTTGGCATGCACAAAA
* *
5143180 AAATTCAGGTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAATGTCCCCATTTCA
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATGTCCCCATTTCA
* *
5143245 AACACTTTAATAACTACTCGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGT
585 GACACTTTAATAACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG-GTGTGAGT
* *
5143310 TCTCAAGGTTTGATGAGGGATAGAGGGCCAATATGAGGGCCAAGTACCAGCACCCATCGCATATC
649 TCTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
5143375 ATGTGCGAACACCCCCCCGGCCCCCCTGATCGTCGGAACCCCAAAGTCGCCAGTCAGGTTCTCCG
714 ATGTGCGCACACCCCCCCGGCCCCCC-GATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCG
*
5143440 GTAATGGTGCCTCGGTGAAGAAAAATACGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCG
778 GTAATGGTGCCCCGGTGAAGAAAAATACGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCG
5143505 CAACCTTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATG
843 CAACCTTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * *
5143552 CTTAGACTGGGAGTGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGTGTGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGTTCAGC
5143617 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTACCATCCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTACCATCCT
* *
5143682 ACTACCGCAACCTTCAGTCTGGTCCGATCTTATACTGGGAATGAACTCCGTATGCCTAAGGCAAC
131 ACTACCGCAACCTTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
*
5143747 CGATGAAAGGAGCAAGCGGGCGGGAGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
196 CGATGAAAAGAGCAAGCGGGCGGGAGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
*
5143812 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGTGTGCCAATGCCAA
261 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCAA
* *
5143877 CTTTATGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGACG
326 CTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
*
5143942 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTC
391 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* *
5144007 AAAAGGAGTTTTGGAGCCAAACATGGTATACGTGATCGATGTATTTTTTTTTGGCATGCACAAAA
456 AAAAGGAGTTTTGGACCCAAACATGGTAGACGTGATCGATGTA-TTTTTTTTGGCATGCACAAAA
*
5144072 AAATTCAGGTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATGTCCCCATTTCA
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATGTCCCCATTTCA
5144137 GACACTTTAATAACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTT
585 GACACTTTAATAACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTT
* * * * **
5144202 CTCGAGGTTTGATGTGGGATAGGGGGCCCATATAAGGGCCAAGTACTTGCACCCATCGCACATCA
650 CTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
5144267 TGTGCGTACA-CCCCTCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCAGTCAGGTTCTCCGG
715 TGTGCGCACACCCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGG
* * * * * *
5144331 TGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGGGCCCAGCATGTGCTGCCAC
779 TAATGGTGCCCCGGTGAAGAAAAATACGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGC
*
5144396 AACC--C--TC-GGTCTGATC-----C-------G-A-T-C---T-
844 AACCTTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * **
5144418 C--AGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAA-CGTGCGGGCACTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-AAGCGTGCGGGCGTTCAG
* * * * ** * *
5144480 CCTGCCAGAGAGGCAGGATGCACAAGCCGGGGATCGGTTGGGT-CCCC-C--TATG----CATGC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTACCATCC
* * * * *
5144537 T-GT--CGCAACCCT-AGGTCTAGTCCGATCTTAGACTGGGAATCAACTCTGTATGCCTAAGCCA
130 TACTACCGCAACCTTCA-GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** ** * * * * * * *
5144598 ACCAACGAAACTAGCGGGCGGGCGGGCGGGCGGGCTCTATGCCGGCCAGAAAGGCGAGATGTGCA
194 ACCGATGAAAAGAGCAAGCGGGCGGGAGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCA
* * * **
5144663 AGCCGTGTATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTGTACGTGCCAAT-CT
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGC-
** *
5144727 CATTTTTATGGCTTGTAAATTCATA-AATGGTCCCTTAAGCCTTCACGTGTAGTTTCATGGCAAG
323 CAACTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
5144791 ACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTT
388 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
** * * * ** * *
5144856 TTCGGAAGGCGTTTTGG-CCCAAAACTTGGTAGACGTCATCCTTGTATTTTTGTTGGCATGCATA
453 TTCAAAAGGAGTTTTGGACCC-AAACATGGTAGACGTGATCGATGTATTTTTTTTGGCATGCACA
* *
5144920 AAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
517 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA-TGTCCCCAT
** * *
5144985 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATGTCAAATGCTCTTTAACGGGGTGT
581 TTCAGACACTTTAATAACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGT
* * * *
5145050 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCACCACCCATCACA
645 GAGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
5145115 CATCATGTGCGCACACCCCCCAGCCCCCCCGATCGCCGGAACCCCAATGCCGTCAGTCAGGTTCT
710 CATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTC-
* * * * * *
5145180 TCGACGATGCTCTGGCGATGATGCCCCAAG-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
774 TC--CG--G---T---AATGGTGCCCC-GGTGAAGAAAAATACGACACCAGCACATGCCTGAGCC
* * * **
5145244 CAGCATGTGCTGCTGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
828 CAGCATGTGCTGCCGCAACCTTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * * * * * *
5145306 CTTAGACTTGGAATGAACTCCATATGCCTAAGTCAACCTACGAAACGAGCGTACGAGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGTTCAGC
** * * ** *
5145371 CGGCCAGAGGGGTAGGATGCGTAAGCCGGGGATCGACCGGGTCTTCCTCTGTGTGCTACCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTACC-ATCC
* * * * *
5145436 TGCTACCGCAACCTTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAA
130 TACTACCGCAACCTTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
5145501 C
195 C
5145502 TGACGAAATG
Statistics
Matches: 4164, Mismatches: 372, Indels: 156
0.89 0.08 0.03
Matches are distributed among these distances:
851 70 0.02
852 196 0.05
853 300 0.07
854 7 0.00
855 1 0.00
856 7 0.00
858 1 0.00
860 3 0.00
861 1 0.00
862 1 0.00
863 4 0.00
864 149 0.04
865 3 0.00
866 2 0.00
867 1 0.00
868 2 0.00
869 9 0.00
870 1 0.00
871 1 0.00
872 1 0.00
873 1 0.00
874 1 0.00
880 1 0.00
881 1 0.00
882 1 0.00
883 1 0.00
884 2 0.00
885 13 0.00
886 507 0.12
887 368 0.09
888 53 0.01
889 1 0.00
890 190 0.05
891 84 0.02
892 1602 0.38
893 443 0.11
894 75 0.02
895 2 0.00
898 1 0.00
899 3 0.00
900 1 0.00
902 53 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGTTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTACCATCCT
ACTACCGCAACCTTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGATGAAAAGAGCAAGCGGGCGGGAGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCAA
CTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
AAAAGGAGTTTTGGACCCAAACATGGTAGACGTGATCGATGTATTTTTTTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATGTCCCCATTTCAG
ACACTTTAATAACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTC
TCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGTA
ATGGTGCCCCGGTGAAGAAAAATACGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAA
CCTTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATG
Found at i:5143562 original size:26 final size:26
Alignment explanation
Indices: 5143526--5143578 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5143516 CTGGTCCGAT
5143526 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
5143552 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
5143578 C
1 C
5143579 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:5145331 original size:26 final size:26
Alignment explanation
Indices: 5145280--5145332 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5145270 CTGGTCTGAT
**
5145280 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
5145306 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
5145332 C
1 C
5145333 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:5147440 original size:26 final size:26
Alignment explanation
Indices: 5147401--5147453 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5147391 CTGATTCGAT
* *
5147401 CTTAGACTGGGAATGGACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
5147427 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
5147453 C
1 C
5147454 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:5149146 original size:33 final size:33
Alignment explanation
Indices: 5149104--5149204 Score: 193
Period size: 33 Copynumber: 3.1 Consensus size: 33
5149094 CGATAGTGCT
5149104 CGGGTGAAGAAAAATGTGGCACCAGCACATGCC
1 CGGGTGAAGAAAAATGTGGCACCAGCACATGCC
5149137 CGGGTGAAGAAAAATGTGGCACCAGCACATGCC
1 CGGGTGAAGAAAAATGTGGCACCAGCACATGCC
*
5149170 CGGGCGAAGAAAAATGTGGCACCAGCACATGCC
1 CGGGTGAAGAAAAATGTGGCACCAGCACATGCC
5149203 CG
1 CG
5149205 AACCCAGCAT
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
33 67 1.00
ACGTcount: A:0.33, C:0.26, G:0.31, T:0.11
Consensus pattern (33 bp):
CGGGTGAAGAAAAATGTGGCACCAGCACATGCC
Found at i:5149283 original size:26 final size:26
Alignment explanation
Indices: 5149245--5149297 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5149235 CCGATCCGAT
* * *
5149245 CTTAGTCTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
5149271 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
5149297 C
1 C
5149298 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:5151019 original size:25 final size:25
Alignment explanation
Indices: 5150984--5151033 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
5150974 AATCTAATCT
* * *
5150984 TAGACTGGGAATGAACTCTGTATGC
1 TAGACTAGGAAAGAACTCTATATGC
5151009 TAGACTAGGAAAGAACTCTATATGC
1 TAGACTAGGAAAGAACTCTATATGC
5151034 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (25 bp):
TAGACTAGGAAAGAACTCTATATGC
Found at i:5153453 original size:176 final size:177
Alignment explanation
Indices: 5153154--5153509 Score: 563
Period size: 176 Copynumber: 2.0 Consensus size: 177
5153144 AAAACTCGAA
* **
5153154 GTGTACAAGATTTTGTGATCATTAGAAAAAAGTGACCCTGTTTCAGACACTTTAATCGCTACTGG
1 GTGTACAAGATTTTGTGACCATTAGAAAAAAGTGACCCCATTTCAGACACTTTAATCGCTACTGG
* * *
5153219 TAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGTGTTCTAGAGGTTTGATGAGGG-
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTAGAAGTTTGATGAGGGA
5153283 T-AGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCAT
131 TAAGGG-GCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCAT
* * * *
5153330 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATTGCTACTGG
1 GTGTACAAGATTTTGTGACCATTAGAAAAAAGTGACCCCATTTCAGACACTTTAATCGCTACTGG
* * *
5153395 CAGCAAACCTGTACAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGTTTGATGAGGGA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTAGAAGTTTGATGAGGGA
*
5153460 TAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
131 TAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCAT
5153507 GTG
1 GTG
5153510 CGCACACCTC
Statistics
Matches: 164, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
176 116 0.71
177 44 0.27
178 4 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (177 bp):
GTGTACAAGATTTTGTGACCATTAGAAAAAAGTGACCCCATTTCAGACACTTTAATCGCTACTGG
CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTAGAAGTTTGATGAGGGA
TAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCAT
Found at i:5153634 original size:17 final size:17
Alignment explanation
Indices: 5153612--5153651 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
5153602 AAATGTGGCA
5153612 CCAACACATGCCCGAGC
1 CCAACACATGCCCGAGC
**
5153629 CCAACATGTGCCCGAGC
1 CCAACACATGCCCGAGC
5153646 CCAACA
1 CCAACA
5153652 TGTGCTACGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.30, C:0.45, G:0.17, T:0.07
Consensus pattern (17 bp):
CCAACACATGCCCGAGC
Found at i:5153652 original size:17 final size:17
Alignment explanation
Indices: 5153620--5153656 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
5153610 CACCAACACA
5153620 TGCCCGAGCCCAACATG
1 TGCCCGAGCCCAACATG
5153637 TGCCCGAGCCCAACATG
1 TGCCCGAGCCCAACATG
5153654 TGC
1 TGC
5153657 TACGGCAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.22, C:0.41, G:0.24, T:0.14
Consensus pattern (17 bp):
TGCCCGAGCCCAACATG
Found at i:5153727 original size:26 final size:26
Alignment explanation
Indices: 5153683--5153735 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5153673 CTGGTCCGAT
* *
5153683 CTTAGACTGGGAATTAACTCCATATG
1 CTTAGACTAGGAATAAACTCCATATG
* *
5153709 CTTAGACTAGTAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCATATG
5153735 C
1 C
5153736 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCATATG
Found at i:5154777 original size:177 final size:177
Alignment explanation
Indices: 5154246--5154778 Score: 917
Period size: 177 Copynumber: 3.0 Consensus size: 177
5154236 AAAACTCGTA
* * * *
5154246 GTGTACAAGAATTTGTGATCATTAGAAAAAAGT-TACCCCATTTCAGACACTTTAATGGCTACTG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCCATTTCAGACTCTTTAATGGCTACTG
* * * *
5154310 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTAGAGGTTTTATAAGGG
65 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
5154375 -TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTAAATCAT
130 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTAAATCAT
5154422 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGG
* *
5154487 CAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
5154552 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCAT
131 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTAAATCAT
5154599 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGG
1 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGG
*
5154664 CAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
66 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
5154729 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGTACATCAT
131 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTAAATCAT
5154776 GTG
1 GTG
5154779 CACACACCCC
Statistics
Matches: 338, Mismatches: 17, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
176 117 0.35
177 221 0.65
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (177 bp):
GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGG
CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTAAATCAT
Found at i:5155024 original size:345 final size:344
Alignment explanation
Indices: 5154610--5155292 Score: 1019
Period size: 345 Copynumber: 2.0 Consensus size: 344
5154600 TGTACAAGAT
* * * *
5154610 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGGCAGTAAACCTG
1 TTTGTGACCATTGGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTG
*
5154675 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
66 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAA
***
5154740 TATAAGGGCCAAGTACCAGCACCCATTGTACATCATGTGCAC-ACACCCCACTGGCCCCCCCGAT
131 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACGAC-CCCCA-TGGCCCCCCCGAT
* * * * * *
5154804 CGCCGGAACCCCAATGCCGTCGGTGAGGTTCT-CTGGCGATGCTCCGACGATGGTGCCCCGACGA
194 CGCCGGAACCCCAATGACGCCGATCAGGTTCTAC-GACGATGCTCCGACAATGGTGCCCCGACGA
*
5154868 AGAAAAATACGGGACCAACACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTAGTCC
258 AGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTAGTCC
5154933 GATCTTAGACTGGGATGTGAAC
323 GATCTTAGACTGGGATGTGAAC
* * * *
5154955 TTTGTGACCCTTGGAAAAAAGTGTCCCTATTTCAGACACTTTAATAGCTACTGGTAGCAAACTTG
1 TTTGTGACCATTGGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTG
* *
5155020 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGCGGGATAGGGGACCAA
66 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAA
* * * *
5155085 TATAAGGGCCAAGTACTAGCACCCATCACACATTATGTGCGCGGACCCCCATGGTCCCCCCGATC
131 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCAC-GACCCCCATGGCCCCCCCGATC
** * * * *
5155150 GTTGGAACCCTAATGACGCCGATCAGGTTCTACGACGATGCTGCGACAATGGTGCCCTGACGAGG
195 GCCGGAACCCCAATGACGCCGATCAGGTTCTACGACGATGCTCCGACAATGGTGCCCCGACGAAG
* *
5155215 AAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGA
260 AAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTAGTCCGA
5155280 TCTTAGACTGGGA
325 TCTTAGACTGGGA
5155293 ATCAACTCCG
Statistics
Matches: 302, Mismatches: 33, Indels: 6
0.89 0.10 0.02
Matches are distributed among these distances:
345 294 0.97
346 6 0.02
347 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (344 bp):
TTTGTGACCATTGGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAA
TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACGACCCCCATGGCCCCCCCGATCG
CCGGAACCCCAATGACGCCGATCAGGTTCTACGACGATGCTCCGACAATGGTGCCCCGACGAAGA
AAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTAGTCCGAT
CTTAGACTGGGATGTGAAC
Found at i:5155310 original size:26 final size:26
Alignment explanation
Indices: 5155281--5155331 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5155271 CTGGTCCGAT
5155281 CTTAGACTGGGAATCAACTCCGTATA
1 CTTAGACTGGGAATCAACTCCGTATA
* *
5155307 CTTAGATTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATCAACTCCGTAT
5155332 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATA
Found at i:5156237 original size:25 final size:26
Alignment explanation
Indices: 5156194--5156245 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
5156184 CTGATCTGAT
5156194 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5156220 CTTAGACT-GGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5156245 C
1 C
5156246 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5157867 original size:901 final size:892
Alignment explanation
Indices: 5154955--5160720 Score: 6725
Period size: 892 Copynumber: 6.5 Consensus size: 892
5154945 GGATGTGAAC
* * * * * *
5154955 TTTGTGACCCTTGGAAAAAAGTGTCCCTATTTCAGACACTTTAATAGCTACTGGTAGCAAACTTG
1 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * *
5155020 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGCGGGATAGGGGACCAA
66 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * ** **
5155085 TATAAGGGCCAAGTACTAGCACCCATCACACATTATGTGCGCGGACCCCCATGGTCCCCCCGATC
131 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATC
** * * * * * * * *
5155150 GTTGGAACCCTAATGACGCCGATCAGGTTCTACGACGATGCTGCGACAATGGTGCCCTGACGAGG
195 GCAGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC-GACGAAG
*
5155215 AAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGA
259 AAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTGGTCCGA
* * * * *
5155280 TCTTAGACTGGGAATCAACTCCGTATACTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAATC
324 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACC
* * * * *
5155345 CACGAAATGAGTGTGCGGGTGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGACC
389 CACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-T
*** * * ** * ** *
5155410 CGA-TCCCCCTCTGTGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCAATCTGATCTGAGACT
453 CGAGTCCCCCTCCACGTGCTACCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGACT
* ** * * * *
5155474 AGGAATGAACTCTATATGCCTAAGCCAATCGATGAAACGAGTGGGCGGGCGGGCAGGCGGGCGCT
518 GGGAATGAACTCCGTATGCCTAAGCCAACCGA-CAAA--A-----C--GAGGG-AGGCGGGCACT
* *
5155539 ACGTCGGCC-GAAGAGATGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
572 ACGTCGGCCAG-AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
5155603 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTA
636 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* **
5155668 AGCCTTCACGTCAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTT
701 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTT
* * *
5155733 TTACAGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGCTAGACGTGA
766 TTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * *
5155798 TCCTTGTATATTTGTTGGCATGCATAAAAAAAATT-AGCTAAAAACTTTAACGCCTAGAAGTGTA
831 TCCTTTTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAAC--T-----C-A-AAGTGTA
*
5155862 CAATAT
887 CAAGAT
* *
5155868 TTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTAGCAGCAAACCTG
1 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
5155933 TAAAATCTCAAATGCGCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAA
66 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
5155998 TATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCGCGCACACCCCCCGGCCCCCCGATC
131 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCGGCCCCCCGATC
* * * * *
5156063 TCCGAAACCCCAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACAAAG
195 GCAGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG-CCCGACGAAG
* * * * * * *
5156128 AAAAATACGACACCAACACATACCCGAGCCTAGCATGTGCTGTAGCAACCCTCGGTCTGATCTGA
259 AAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTGGTCCGA
5156193 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAACTTCGTATGCCTAAGTCAACC
324 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACC
* * * * * *
5156257 CATGAAACGAACATGCGGGTGCTCA-ACTGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCAAT
389 CACGAAACGAGCGTGCGGGTGCTCAGTC-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAT
* * * * * *
5156321 CGAGTCCCCCCCTGCAC--GCTATCGATCCAGCTGCCAAAACCCTCACTCCGGTCCGATCTTAGA
453 CGAGT--CCCCCTCCACGTGCTACCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGA
* * * * *
5156384 TTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGA-GCGGGCACTACGTCGGCT
516 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGGGAGGCGGGCACTACGTCGGCC
*
5156448 AGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
581 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*
5156513 TTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
646 TTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * ** *
5156578 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTATTTACGAG-TC
711 TGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACG-GTTC
* * * * * * *
5156642 -GAGATTTTTTAAAATTTTGTCAGACGGATTTTTGGTCCCAAGCTTGGTAGACGTGATCCTTGTA
775 AG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTA
* *
5156706 TTTTTTGTTGGCATGCA-TAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
839 -TTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
* *
5156760 TTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGAAAACCTG
1 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
5156825 TAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
66 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
5156890 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAAACCGCCCCCGGCCCCCCGATC
131 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCCGGCCCCCCGATC
* * **
5156955 GTCA-GAACCCCAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCGACGAAG
195 G-CAGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCGACGAAG
* *
5157019 AAAAATACGACACCAACACATGCCCGAGCCCAACATGTGCTGTCGTAACCCTCGGTCTGGTCCGA
259 AAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTGGTCCGA
*
5157084 TCTTAGACTGGGAATGAACTCCGTATGCTTCGACTGGGAATGAACTTCGTATGCCTAAGTCAACC
324 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACC
* * * * * * *
5157149 CACGAAACGAGCGTGCTGGTCCTCAGTCGACCAAAGGGGTGGGATGCGCAAGTCGGGGATCGGTC
389 CACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC
* ** * *
5157214 GGGTCCCCCTCCACGTGCTACCGATCCTGCTGCCGTAACTCTCAGTCTGGTCTGATCTTAGACTG
454 GAGTCCCCCTCCACGTGCTACCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTG
*
5157279 GGAATGAACTCCGTATGCCT-AGACCAACCGACAAAATGAGCGGATGGGAGGGCGGGCACTACGC
519 GGAATGAACTCCGTATGCCTAAG-CCAACCGAC-AAA--A-C-GA-GGGA-GGCGGGCACTACGT
*
5157343 CGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
576 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
5157408 TCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCTTGAAGCC
641 TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT-AAGCC
* **
5157472 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGT
705 TTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTAC
** **
5157537 GGTTCAGGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGTTCCCAAACTTGGTAGAAATGATCCT
770 GGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC-
* * **
5157601 TTTTTTTTTTTTTTGTAATGCACAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
834 -TTTTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
* * * **
5157661 TTTGTGACCATTTGAATAAAGTGTCCCCATTTTAGACACTTTAATGGCCACTGGCAGCAAACCCA
1 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * *
5157726 TAAAATCTCAAATTCTCTTTAAGGGGGTGTAAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
66 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * *
5157791 TATAAGGGCCCAGTTCCAGCACCCATCGCACATCAAGTGCGCACACCCCCCCGGTCCCCCCGATC
131 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATC
* * * *
5157856 GCAGGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCTGACGAAGGTGCCCCGATGAAG
195 GCAGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG-CCCGACGAAG
** * * ** * * **
5157921 AAAAATGTGGCACCAGCACATGCCCGAGCCCAACATGTGC-CACTGTAACCCTTGATCTGGTTTG
259 AAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTC-GTAACCCTCGGTCTGGTCCG
* *
5157985 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAC
323 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAAC
** * * * *
5158050 CCACGAAACGAGCGTGCGGGTTTTCAGTCAGCCAGAGAGG-GGGATGCGCATGCCGGGGATCGGT
388 CCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAT
* **** * * * * * *
5158114 CGAGACCCCCTCTGTATGCTGCTGATCCTACTGCCACAACCCTCGGTCTGGTCTGATCTTAGAAT
453 CGAGTCCCCCTCCACGTGCTACCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGACT
* * * **
5158179 -TGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAACG-GGCGGGCACTACGTCGGCCAG
518 GGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGGGAGGCGGGCACTACGTCGGCCAG
* * *
5158242 AGAAACGGGACGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATACT
583 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* *
5158307 TCTGCATGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
648 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* *
5158372 AAGTTTAATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACTGTTTCA-
713 AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTAC-GGTTCAG
* * * *
5158436 GATTTTTTAAAATTTTTTTGGAAGGCGTTTTGGCCCCAAACTTGGCAGACGTGATCCTTTTATTG
777 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTT
* * **
5158501 TTATTGGCATGCAC-AAAAAAATTCAGCTAAAAACGCGGAGTGTACAAGAT
842 TTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
* * *
5158551 TTTGTGACCATTTGAATAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTA
1 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
5158616 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
66 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
5158681 TATATGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACA------C--CCCCCCGATCG
131 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCG
* * * ** * * *
5158738 CCGGAACCCCAATGCTGTCGGCCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCTAGTGAAGA
196 CAGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCGA-CGAAGA
** ** * * **
5158803 AAAATGTGGCACCAGGAAATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTCCGAT
260 AAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTGGTCCGAT
5158868 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC-TCTGTATGCCTAAGTCAACC
325 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTC-GTATGCCTAAGTCAACC
* * * ** * *
5158932 CATGAAACGAGCGTGCGGGTGCTCA-TCCGGCCAGAGGGGCGGGATGCGTAACCCTCGGTTTGAT
389 CACGAAACGAGCGTGCGGGTGCTCAGT-CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAT
* * * * * *
5158996 CTGA-T----CT-TA-G-ACTA-TGA-----ATG----AA---T---TCC-GTATG--CCTA-A-
453 C-GAGTCCCCCTCCACGTGCTACCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGAC
** ** * * * ** * *
5159032 --GCCA--AACAACG-A-----AATG--AGCGGGC-AGGCGAGCG-GGTGGGCACTACGTCGGCC
517 TGGGAATGAACTCCGTATGCCTAA-GCCAACCGACAAAACGAGGGAGGCGGGCACTACGTCGGCC
* * *
5159083 AAATAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
581 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* *
5159148 TTTCTACGTGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
646 TTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * * * * *
5159213 TGAACTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCG
711 TGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCA
* * * **
5159278 GGATTTCTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTCATATT
776 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATT
*
5159343 TTT-TTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
841 TTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
*
5159393 TTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
1 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * *
5159458 TAAAATCGCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGCTTTGATGAGGGATAGGGGGCCAA
66 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
5159523 TATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCG
131 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCG
* ** * * **
5159588 TC-GGAACCCCCATGCCACCGATCAGGTTCTCCGGCGATGCTCCGACGATGGCACCCCGACGAAG
196 -CAGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGG-TGCCCGACGAAG
* ** **
5159652 AAAAATATGGCACCAACACATGCTGGAGCCCAGCATGTGCTACCGTAA-CC-C--TC-GGTCCGA
259 AAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTGGTCCGA
*
5159712 TC-----C---------A------ATG-TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
324 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACC
* * *
5159756 CACGAAACGAGCGTGCGGGTGCTCAG-CTGGGCAGAGGGACGGGATGCGCAAGCCGAGGATCGAT
389 CACGAAACGAGCGTGCGGGTGCTCAGTC-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAT
* * * *** *
5159820 CG-GCTCCCCC-CCTGCGTGCTATCGATCCTGTTGCTGTAACCCTCAGTCTGGT-TCGATCTTAG
453 CGAG-TCCCCCTCC-ACGTGCTACCGATCCTGCTGCCACAACCCTCAGTCCGGTCT-GATCTTAG
* * * *
5159882 ACTGGGAATGAACTCTGTATGCCTAAGCCAATCGGTGAAACAAACAGGCAGGTGGGCGGGCGGGC
515 ACTGGGAATGAACTCCGTATGCCTAAGCCAA-C--CG--ACAAA-A--C--GAGGG-AGGCGGGC
**
5159947 ACTACACCGGCCAGAGAGATC-GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
569 ACTACGTCGGCCAGAGAGA-CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
5160011 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
633 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
** * * * **
5160076 TTAAGTGTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
698 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAAC
* * **
5160141 TTTTTACGGTTCGGGTTTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAG-CG
763 TTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * ** *
5160205 TGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAGATTCAGCTAAAAATTGGAAGTGTACAGGAT
828 TGATCCTTTTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
* *
5160269 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGACAGCAAACCTG
1 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
5160334 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAA
66 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * * *
5160399 TATAAGGGTCGAGTAGCAGCACCCATCGCACATCATGTGCGCACACCCCTTCCGGCCCCCCCAAT
131 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCCGG-CCCCCCGAT
* * * * * * * **
5160464 CATC-GAAAACCCAATGCCATCGATAAGGTTCTCCGACGATGCCCCGGTGATGGTGCCCCGACGA
194 C-GCAGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG-CCCGACGA
* * * * * * ** *
5160528 AGTAAAATAAGGCACCAGCACAT-CCCGAGCCCAGGATGTGCTGCCGTAACCCTCAGTCCAGTCT
257 AGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTGGTCC
* *
5160592 GATCTTAGACTGGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
322 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
** * * * * * *
5160657 CCCACGAAACGAGCGTATGGGTGTTCAGCCGACCAAAGGGGCGGGATACGTAAGCCGGGGATCG
387 CCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
5160721 GTGGTTCCCC
Statistics
Matches: 4196, Mismatches: 506, Indels: 312
0.84 0.10 0.06
Matches are distributed among these distances:
823 2 0.00
824 88 0.02
825 4 0.00
828 1 0.00
830 1 0.00
831 4 0.00
832 2 0.00
837 2 0.00
840 1 0.00
841 2 0.00
842 214 0.05
843 255 0.06
844 5 0.00
845 10 0.00
846 3 0.00
847 3 0.00
848 5 0.00
849 2 0.00
850 99 0.02
851 10 0.00
853 1 0.00
854 2 0.00
855 1 0.00
856 7 0.00
857 1 0.00
858 4 0.00
859 2 0.00
861 1 0.00
862 3 0.00
863 1 0.00
864 1 0.00
865 2 0.00
866 1 0.00
868 1 0.00
869 3 0.00
872 1 0.00
874 6 0.00
875 18 0.00
876 456 0.11
877 28 0.01
878 82 0.02
879 1 0.00
880 6 0.00
881 206 0.05
882 25 0.01
883 2 0.00
884 1 0.00
887 1 0.00
890 205 0.05
891 121 0.03
892 591 0.14
893 50 0.01
894 2 0.00
895 3 0.00
896 3 0.00
897 3 0.00
898 3 0.00
899 45 0.01
900 515 0.12
901 358 0.09
902 162 0.04
903 87 0.02
904 2 0.00
909 1 0.00
911 6 0.00
912 143 0.03
913 304 0.07
914 15 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (892 bp):
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCG
CAGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCGACGAAGAA
AAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTGGTCCGATC
TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCA
CGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGA
GTCCCCCTCCACGTGCTACCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTGGG
AATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGGGAGGCGGGCACTACGTCGGCCAGAGA
GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
GCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
TTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGGATT
TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGT
TGGCATGCACAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
Found at i:5158025 original size:26 final size:26
Alignment explanation
Indices: 5157987--5158039 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5157977 CTGGTTTGAT
*
5157987 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
5158013 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
5158039 C
1 C
5158040 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:5158897 original size:26 final size:26
Alignment explanation
Indices: 5158868--5158920 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5158858 CCAGTCCGAT
5158868 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5158894 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5158920 C
1 C
5158921 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5160635 original size:26 final size:26
Alignment explanation
Indices: 5160595--5160647 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5160585 CCAGTCTGAT
5160595 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
5160621 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
5160647 C
1 C
5160648 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:5162058 original size:14 final size:14
Alignment explanation
Indices: 5162039--5162068 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
5162029 ATGCTCCGGT
5162039 GATGGTGCCCCAAC
1 GATGGTGCCCCAAC
*
5162053 GATGGTGCCCCTAC
1 GATGGTGCCCCAAC
5162067 GA
1 GA
5162069 AGATAAATAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.33, G:0.30, T:0.17
Consensus pattern (14 bp):
GATGGTGCCCCAAC
Found at i:5163896 original size:26 final size:26
Alignment explanation
Indices: 5163860--5163912 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5163850 CTGGTCCGAT
*
5163860 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5163886 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5163912 C
1 C
5163913 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5164770 original size:26 final size:26
Alignment explanation
Indices: 5164741--5164791 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5164731 GGTCCGATCC
*
5164741 TAGACTAGGAATGAACTCCGTATGCT
1 TAGACTAGGAATGAACTCCATATGCT
*
5164767 TAGACTGGGAATGAACTCCATATGC
1 TAGACTAGGAATGAACTCCATATGC
5164792 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCATATGCT
Found at i:5166556 original size:26 final size:26
Alignment explanation
Indices: 5166527--5166577 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5166517 GGTCCGATCC
*
5166527 TAGACTAGGAATGAACTCCGTATGCT
1 TAGACTAGGAATGAACTCCATATGCT
*
5166553 TAGACTGGGAATGAACTCCATATGC
1 TAGACTAGGAATGAACTCCATATGC
5166578 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCATATGCT
Found at i:5167458 original size:25 final size:26
Alignment explanation
Indices: 5167424--5167475 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5167414 CTGATCTGAT
5167424 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5167449 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5167475 C
1 C
5167476 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5168367 original size:26 final size:26
Alignment explanation
Indices: 5168329--5168381 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5168319 CCAGTCTGAT
* *
5168329 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
5168355 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
5168381 C
1 C
5168382 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:5169261 original size:26 final size:26
Alignment explanation
Indices: 5169232--5169284 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5169222 CTGGTCCGAT
5169232 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5169258 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5169284 C
1 C
5169285 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5170051 original size:11 final size:11
Alignment explanation
Indices: 5170035--5170067 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
5170025 CGGTCAGGTT
5170035 CTCCGACGATG
1 CTCCGACGATG
5170046 CTCCGACGATG
1 CTCCGACGATG
*
5170057 CTCCGATGATG
1 CTCCGACGATG
5170068 GTGCCCCGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.33, G:0.27, T:0.21
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:5170177 original size:26 final size:26
Alignment explanation
Indices: 5170148--5170200 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5170138 CCAATCCGAT
5170148 CTTAGACTCGGAATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCGTATG
*
5170174 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCGTATG
5170200 C
1 C
5170201 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCGTATG
Found at i:5171077 original size:26 final size:26
Alignment explanation
Indices: 5171048--5171103 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
5171038 TCAGTCTGAT
*
5171048 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTACG
5171074 CTTAGACTGGGAATGAACTCTGTACG
1 CTTAGACTGGGAATGAACTCTGTACG
5171100 CTTA
1 CTTA
5171104 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTACG
Found at i:5171991 original size:26 final size:26
Alignment explanation
Indices: 5171950--5171999 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
5171940 CCAGTTTGAT
*
5171950 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACAGGGAATGAACTCCGTACG
*
5171976 CTTAGACAGGGTATGAACTCCGTA
1 CTTAGACAGGGAATGAACTCCGTA
5172000 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTACG
Found at i:5172914 original size:26 final size:26
Alignment explanation
Indices: 5172862--5172914 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5172852 CCGATCTTAG
*
5172862 ACTGGGAATGAACTCCGTATGCTTAT
1 ACTGGGAATGAACTCCGTATGCCTAT
5172888 ACTGGGAATGAACTCCGTATGCCTAT
1 ACTGGGAATGAACTCCGTATGCCTAT
5172914 A
1 A
5172915 TCAACCCATG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
ACTGGGAATGAACTCCGTATGCCTAT
Found at i:5173402 original size:903 final size:902
Alignment explanation
Indices: 5161385--5182196 Score: 23549
Period size: 904 Copynumber: 23.3 Consensus size: 902
5161375 GCCCAGCATG
* * * * ** *
5161385 TGCTGCCTCAACACTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
5161450 CCGACG-AA--A--TGA---GCGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAA
66 CCGACGAAACGAGCCGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
5161507 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACA-TGCCAGTGCC
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-CAGTGCCAATGCC
* *
5161571 ATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGA
195 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** *
5161636 CGACTCGTTTTCTATTTTTCATGATTTTC-AAACTTTTTGTGGTTCAGGATTTTTTTAAAATTTT
260 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTT
* * *
5161700 TTCAGAAGGATTTTTGGCCCCAAA-TTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAA
324 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
5161764 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
389 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
5161829 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
454 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
5161894 AGTTCTTGAGGTTTGAAGAGGGTTAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCCAC
519 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
5161959 ATCATGTGCGCACACTCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCAGGTCAGGTTCT
584 ATCATGTGCGCACAC-CCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCT
* * *
5162023 CCGACGATGCTCCGGTGATGGTGCCCCAACGATGGTGCCCCTACGAAGATAAATACGGCACCAAC
648 CCGACGATGCTCC---------G------CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAAC
* * *
5162088 GCATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTGGACTAGGAATGA
698 ACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
*
5162153 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-A-CCATGAAACGAGCGTACG
763 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCG
* * * * * * * * * *
5162216 GGCGCTCAGTCAGCCAGAGGGGCAGGATGCGCAAGCTGCGGATCGGCTGGGTGCCCCGCTGCGTG
828 GGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTG
* *
5162281 CTACCAATCC
893 CTGCCGATCC
* * * * ** * *
5162291 TGCTACTGCCACCCTCACT-TCGGTCCAATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCG
1 TGCTGCCGCAACCCTCAGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
5162355 ACAGACGAAACGA---G-CGGGCAGACGGGCAGGCACTATGCCGGCCAGAGAGGCGGGATACGCA
65 ACCGACGAAACGAGCCGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
5162416 AGCCGTGGATC---------G-A--------T----ACATATTCATATTTCT-ATGTACCAATGC
130 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCA-GTGCCAATGC
* * * *
5162458 CATTTCTACGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAG
194 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
5162523 ACGACTCGTTTTCTATTTTTCACCATTTTCGAAACTTTTTACGGTTCGGGATTTTTCAAAATTTT
259 ACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * *
5162588 TTCGGAAGGAGTTTCGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTGGGCATGCAAAA
324 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACA
*
5162653 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACAT
388 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
5162718 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCCCTTTAAGGGGGTGT
453 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
5162783 GAGTTCTTGAGGTTTGATGATGGATAGGGGGCCAATATAGGGGCCAAGGACCAGCACCCATCGCA
518 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
5162848 CATCATGTGCGCACACCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
583 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCT
** * * * * *
5162913 -C--C---G----GCGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCATATTCTCGAGCCCA
648 CCGACGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCA
* * *
5162968 GCATGTGCTG-TCGCAACCCTTGGTCCGGT-TGATCTTGGACTGGGAATGAACTCCGTATGCTTA
713 GCATGTGCTGCT-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * *
5163031 GACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGAC
777 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGC
* *
5163096 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGT--CCCTCT-C-TGC-G--TATCC
842 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * **
5163150 TGCTACTGTAACCCTC-GATTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
5163214 ACCGATG-AA--A--CGA---GCGGGCTGGCGGGCACTACGCCGGCCAGAGATA--GGATGCACA
65 ACCGACGAAACGAGCCGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
5163269 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACA-TGCCAATGC
130 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-CAGTGCCAATGC
* *
5163333 CATATTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
194 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
5163398 ACGACTCGATTTCTATTTGTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
259 ACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* *
5163463 TTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACTTGATCCTTGTATTTTT-TTGGCATGCACAA
324 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
** **
5163527 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATTATTTTCAAAAAGTGTCCCCATT
389 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
5163592 TCAGACACTTTAGTGGCTACTGGCAACAAA-CTGTAAAATCTCAAATGCTCATTAA-GGGGTGTG
454 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
5163655 AGTTCTCCAGGTTTCATGAGGGATAGGGTGCCAATATAAGGGTCAAGTACCAGCACCCATCGCAC
519 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * ** *
5163720 ATCATGTGCGCACA---------CCCCTCGATCGCCGAAACCCCAATGTCATCGGTTAGGTTCT-
584 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTC
* * ** * **
5163775 C--CG--G-T----GATGCT--CCAG-CGAA-AAAAATGCATCACCGACAGTTGCCCGAGCCCAG
649 CGACGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAG
* * *
5163827 CATGTGCTGTTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGA
714 CATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * *
5163892 TTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGATGCTTAGCCGGCTA
779 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCA
* * ** * * * *
5163957 GAGGGGCGGGATGTGCAAGCCGGGGATCGACCGAGTTTCGCTCTGCATGCTACAGATCC
844 GAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
5164016 TGCTGCTGCAACCCTCAGTCTGCTCTGATCTTAGACTGGGAATGAACTCCGTATGCCCAAGCCAA
1 TGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
5164081 CCGACG-AA--A--TGA---GCGGGCGGGAGGGCACTA-GCCGGTCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCCGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
5164137 GCCGTGAATCGATAGGGCGGTAGGTGGGTTTAGGCACAACTTCATATTTTTGCA-TGCCAATGCC
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-CAGTGCCAATGCC
5164201 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
195 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
5164266 CGACTTGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCTGGATTTTTTAAAATTTTT
260 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * * * *
5164331 TTGGAAGGATTTTTGGCCCCACACTTGGTGGACATGATCCCTGTATTTTTTTTGGCATGCACAAA
325 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
5164396 AAAATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
390 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
5164461 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
455 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
5164526 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
520 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
5164591 TCATGTGCGCACACCCCCCAGCCCCCCCGATCGTCGGAAA-CCCAATGTCGCCGGTCAGGTTCT-
585 TCATGTGCGCACACCCCCCGGCCCCCCCGATCG-CCGAAACCCCAATGCCGCCGGTCAGGTTCTC
* *
5164654 C--C---G----GCGA---TG-CTCGACGAAGAAAAATGCGACACCAACACATGCCCGAGCCCAG
649 CGACGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAG
* * * *
5164706 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCCTAGACTAGGAATGAACTCCGTATGCTTAGA
714 CATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* *
5164771 CTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTGCTCAGCCGGCCA
779 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCA
* * * ** *
5164836 GAGGGGCGGGATACGCAAGCCGGGGATCGACCAGGTCCCCCT-TACGTGCTATCGATAC
844 GAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
5164894 TGCTGCCACAACCCTCAG-CTTGGTCTGATCTTACACTGGAAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTCAGTC-TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* **
5164958 ACTGACGAAACGA---G-CGGGCGGGTAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
65 ACCGACGAAACGAGCCGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * *
5165019 AGCCGCGGATCGATAGGGTGGTTGGCGGGTTTAGGCACATCTTCATATTTTTGC-TTGCCAATGC
130 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-CAGTGCCAATGC
*
5165083 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGCGACA-TTTCATGGCAA
194 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA-AGTTTCATGGCAA
* * * * **
5165147 GACGACTCGTTTTCTATTTTTTATGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTT
258 GACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* *
5165212 TTTTGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
323 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * *
5165277 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTTACCAATTGAAAAAACTGTCCCCAT
388 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
5165342 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTGAAATCTCAAATGCTCTTTAAGGCGGTGT
453 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
5165407 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCACA
518 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
5165472 CATCTTGTGCGCACACCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCT
583 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCT
* * * * *
5165537 CTGGCGATGCTCCGACGATGGTGCCCC-AGCGAAGAAAAATGCGGCACCAACACATGCCCAAACG
648 CCGACGATGCTCCG-CGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAACACATGCCCGAGCC
* * *
5165601 CACCATGTGCTG-TCGCAACCCTCGGTTCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCT
711 CAGCATGTGCTGCT-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* *** * *
5165665 TACACTAAAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCG
775 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCG
* * * * * ** *
5165730 GCCAGAGGGGTGGGATGCGCTAGCCGGGGATCGGCCGGGTCCCCCTCTGCATGCAGTTGATCT
840 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
5165793 TGCTGCCGTAAACCTCAGTCTAGTCTGATGTTACACTAGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** *
5165858 CCGACGAAACGAGCGGACAGGCGGGCGGGCGAGCACTACATCGGCCAGAGAGACGGGATACGCAA
66 CCGACGAAACGAGCCGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
5165923 GCCGTGGATCGATAGGGT-GTTGGTGGGTTTAGGCACATCTTGATTTTTCTGCA-TGCCAATGCC
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-CAGTGCCAATGCC
* *
5165986 ATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGA
195 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
5166051 CGACTCGTTTTCTATTTTTAACGATTTTCAAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTT
260 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* *
5166116 TCGGAATGAGTTTTGGCCCCAAACTTGGTAGACGTCATCCTTGTATTTTTGTTGGCATGCACAAA
325 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
5166181 AAAATTCAGCTAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
390 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
5166246 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGA
455 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
5166311 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
520 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
5166376 TCATGTGCACACACCCCCCAGCCCCCCCGATCGCAGGAAA-CCCAATGTCGCCGGTCAGG-T-T-
585 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGC-CGAAACCCCAATGCCGCCGGTCAGGTTCTC
* * * *
5166437 ---C--T--TCGGCGA---TGCTCCGACGAAGAAAAATGCGACACCAACACATGCTCGAGCCCAG
649 CGACGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAG
* * * *
5166492 CATGTGCTACCGCAACCCTCGGTCCGGTCCGATCCTAGACTAGGAATGAACTCCGTATGCTTAGA
714 CATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * *
5166557 CTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGTCGACCA
779 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCA
* * * *
5166622 GAGGGGCGGGATGCGCAAGCTGGGGATCGACCAGGTCCCCCT-TACGTGCTACCGATCC
844 GAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * * * *
5166680 TGCTGCCACAACCCTTGGTCTGGTTTGATCTTACACTAGAAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
5166745 CTGACGAAACGA---G-CGGGCGGGCAGGCGGACACTACGCCTGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCCGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * * *
5166806 GTCGTGGATTGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTTTGC-TTGCAAATGCC
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-CAGTGCCAATGCC
* *
5166870 ATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGACGTTTCATGGCAAGA
195 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
5166935 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTT
260 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * *
5167000 TTGAAAGGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
325 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
5167065 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
390 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
5167130 CAGACACTTTAATGGCTTCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
455 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
5167195 GTTCTCGAGGTTTGATTAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCACACA
520 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
5167260 TCATGTGTGCACACCCCACCCGACCCCCCCGATC-ACGAAATCCCAATGCCGCCGGTCAGGTTCT
585 TCATGTGCGCACA-CCC-CCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCT
* * * *
5167324 CCGACGATGCTCCGACGTTGGTGGCCCGGCGAAGAAAAATGTGGCACCAACACATGCCCGAGCCC
648 CCGACGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCC
* * * *
5167389 AGCATGTGCTGCTGCAACCCTTGGTCTGATCTGATCTTAGACT-GGAATGAACTCCGTATGCTTA
712 AGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* *
5167453 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCAGCCGGC
777 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGC
* * *
5167518 CAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCTGGGTCCCCCTCTGCGTG-TGCCGATCC
842 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
5167578 TGCTG-CGCAACCCTTAGTCCGGTCTGATCATAGACT-GGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
5167641 CCGACGAAACGAGCAGGAGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCCGAGAGACGGGATGC
66 CCGACGAAACGAGC-CGA---CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
*
5167706 GCAAGCCGTGGATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC-CACGTGCCAA
127 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCA-GTGCCAA
*
5167770 TGCCATTTTTATGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
191 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
*
5167835 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
256 AAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* * * *
5167900 TTTTTTGAAAGAAGTTTTGGCCCCAAACTTGGTATACGTGATCCTTGTATTTTTGTTGGCATGCA
321 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * * *
5167965 CAAAAACATTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCC
386 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
5168030 ATTTTAGACACTTTAATGGCTAATGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGT
451 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
5168095 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA
516 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
5168160 CACATCATGTGCGTACACCCCCCCAGCCCCCCCGATCACCGAAACCCACAATGCCGCCGGTCAGG
581 CACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGAAACCC-CAATGCCGCCGGTCAGG
* * ** *
5168225 TTCTCCGGCGATGCTCCGACGATGGTGCCCCGACAAAGAAAAAAACAGCACCAACACATGCCCGA
644 TTCTCCGACGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGA
* * * *
5168290 GCCCAGCATGTGCTG-TCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAATTCCGTAT
708 GCCCAGCATGTGCTGCT-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
5168354 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAG
772 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * ** *
5168419 TCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGATCCCCCTCTGCGTGCTGCCGATC
837 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATC
5168484 C
902 C
* * ** * *
5168485 TACTACCATAACCCTCACT-TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCGA
1 TGCTGCCGCAACCCTCAGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** *
5168549 ACCGACGAAACAAGCAGGTGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGATGGGATGCGCA
65 ACCGACGAAACGAGCCGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
5168614 AGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATTTCT-ATGTGCCAATGC
130 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCA-GTGCCAATGC
*
5168678 CATTTTTATGGCTTGTAAATTCATACAGT-GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
194 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
5168742 ACGACTCGTTTTCTATTTTTAACGATTTTCAAAACTTTTTATGGTTCGGGATTTTTTAAAATTTT
259 ACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * *
5168807 TTCGGAATGAGTTTTGGCCCCAAACTTGGTAGACATCATCCTTGTATTTTTGTTGGCATGCACAA
324 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
5168872 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
389 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
5168937 TCAGACACTTTAATGGCTTCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
454 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
**
5169002 AGTTCTCGAGGTTTGATGAGGGATAGGATGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
519 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * ** * *
5169067 ATCATGTGCGCAGACCACCCCTGGCTCCTCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTC
584 ATCATGTGCGCACACC-CCCC-GGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTC
* ** * *
5169132 TCTGGTGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACC-ACACATGCCCGAGCC
647 TCCGACGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCC
* * *
5169196 CAGCATGTGCT-ATCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
711 CAGCATGTGCTGCT-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
5169260 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGGTGCTCAGTCG
775 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCG
* * * *
5169325 GCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCC
840 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
5169388 TACTACCACAACCCTC-G-CTTCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCC
1 TGCTGCCGCAACCCTCAGTC-T-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * * *
5169451 AACTGATGAAACAAGCAGGCGGGCAGGCGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
64 AACCGACGAAACGAGCCGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* ** **
5169516 AAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGTGCATCTTCATATTTCTGTGTGCCAATGC
129 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCAGTGCCAATGC
* ** *
5169581 CATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTCAGTTTCATGGTAAG
194 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * * * *
5169646 ATGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTGCAGTTCGAGATTTTTTAAATTTTT
259 ACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * * * *
5169711 TTCGGAAGGATTTTTGGTCCCAAACTTGGTAGCCATGATCCTTTTATTTTTATTGGCATGCACAA
324 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
5169776 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATT
389 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
5169841 TTAGACACTTTAATGGCTACTGGCGGCAAACCTGTAAAATCTCAAATTCTCTTTAAAGGGGTGTG
454 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
5169906 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATCTAAGGGCCAAGTACCAGCACCCATCACAC
519 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
5169971 ATCATGTGCGTACACCCCCCTCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTC
584 ATCATGTGCGCACA-CCCCC-CGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTC
* *
5170036 TCCGACGATGCTCCGACGATGCTCCGATGATGGTGCCCCGACGATGAAAAATGCAGCACCAACAC
647 TCCGACGATGCT-C--C---G---C---GATGGTGCCCCGACGAAGAAAAATGCGGCACCAACAC
* * * ** *
5170101 ATGCCCGAGCCTAGCATGTGTTGCCAG-AACCCTCGGTCCAATCCGATCTTAGACTCGGAATGAA
700 ATGCCCGAGCCCAGCATGTGCTG-CTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
* * * *
5170165 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACTG
764 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGG
** * * * * * * **
5170230 GTGCTCAATCAGTCAGAGGGCCGGGATGCACAAGTCGGGGATC-AGTCGGGTCCCCCTCTGCACG
829 GTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CCGGGTCCCCCTCTGCGTG
5170294 CTGCCGATCC
893 CTGCCGATCC
* * * * *
5170304 AGCTGCCACAACTCTCAATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* **
5170369 CCGACGAAACGA---G-CGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATAAGCAA
66 CCGACGAAACGAGCCGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
5170430 GCCGTGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-TGCCAATACC
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-CAGTGCCAATGCC
* *
5170494 ATTTTTATGGCTTGTAAATTCATACAATGCTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
195 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
** ** * *
5170559 CGACTCGTTTTCTATTTTTCATAATTTTTTAAACTTTTTACTGTTTGGGATTTTTTAAAATTTTT
260 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * *
5170624 TCGAAAGGATTTTTGGCCCTAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
325 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
5170689 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTT
390 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
5170754 TAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
455 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* **
5170819 GTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCATAACCCATCGCACA
520 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
** * *
5170884 TCATGTGCGCACAACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCTGCCGGTCAGGTTCTC
585 TCATGTGCGCAC-ACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTC
** * *
5170949 CGGTGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCA
649 CGACGATGCTC-CGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCA
* * * * * * * *
5171014 ACATGTGCTGCCGTAACCCTTGGTTCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAG
713 GCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * *
5171079 ACTGGGAATGAACTCTGTACGCTTAAGTCAACCCACGAACCGAGCGTGCGGGTGCTCAGCCGGCC
778 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCC
** * * * *
5171144 AGAGGGGCAAGATGCACAAGCCGGGG-TCGATCGGGTCCCACTCTGTGTGCTGCCGATCC
843 AGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
5171203 TACTACTGCAACCCTC-GTTCTGGTCCGATCTTAGACTGGGAATGAACTACGTATGCCTAACCCA
1 TGCTGCCGCAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
5171267 ATCGATG-AA--A--CGA---GTGGGCAGACGGGCACTACGCCGGCCAGAGAGATGGGATGCGCA
65 ACCGACGAAACGAGCCGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
5171324 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCCTGAGTGCCAATGCC
130 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCAGTGCCAATGCC
5171389 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
195 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
5171454 CAACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGATTCGGGATTTTTTAAAATTTTT
260 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * * *
5171519 TTGGAAGGAGCTTTT-GCCCCAAACTTGGTAAACATGATTCTTGTATTTTTATTGGCATGCATAA
325 TCGGAAGGAG-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
5171583 AAAAATTCAGCTAAAAACTTTAATGGCTAGAAGTGTACAAGATTTTGTGACCATTAGAAAAAAGT
389 AAAAATTCAGCTAAAAAC-----T--C--GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* *
5171648 GTCCCCATTTCAAACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
445 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
5171713 GGGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGGACAATATAAGGGCCAAGTACCAGCAC
510 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * *
5171778 CCATCGCATATCATGTGTGCACACCCTCCC-GACCCCCCGATCGTC-AGAACCCCAATGCTGCCG
575 CCATCGCACATCATGTGCGCACACCC-CCCGGCCCCCCCGATCGCCGA-AACCCCAATGCCGCCG
* * *
5171841 GTCAGGTTCTCCGACGATGCTCCGACGATGGTG-CCCGATGATGAAAAATGCGGCAGCAACACAT
638 GTCAGGTTCTCCGACGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACAT
* * *** * **
5171905 GCTCGAGCCCTGCATGTGCTGCCATAACCCTCGGTCCAGTTTGATCTTAGACTGGGAATGAACTC
702 GCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * *
5171970 CGTACGCTTAGACAGGGTATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTG
767 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTG
* * * * * * *
5172035 CTAAGTCGGCCAGAGGGGCGAGATGCGCAAGCCGAGGATCGACCGAGTCCCCCTCTGTGTGCTGT
832 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGC
*
5172100 CGATTC
897 CGATCC
*** ** *
5172106 TGCTGTTACAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* **
5172171 CCGACGAAACG-GGCGAGCGGGCGAGCGGACGGGCGGGCACTACATCGGCCAGAGAGACGGGATG
66 CCGACGAAACGAGCCGA-CGGGC--G-GG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* *
5172235 CGCAAGCCGTGGATTGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTGC-GTGCCA
126 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-CAGTGCCA
*
5172299 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACGTGAAGTTTCATGG
190 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * * *
5172364 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTCGAGATTTTTGAAAA
255 CAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAA
* * * * *
5172429 TTTTCTCGGAAGGAGTTTTAGTCCCAAACTTGTTAGACGTTATCCTTGTATTTTTGTTGGCATGC
320 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * *
5172494 ATAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCT
385 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * * *
5172559 CATTTCATACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCCCTTTAAGGGGA
450 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
5172624 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
515 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * *
5172689 ACACAT-ATTGTGTGCACACCCCCTGGCCCCCCCGATCACCGAAACCCTAATGCCACCGGTCAGG
580 GCACATCA-TGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGG
** * *
5172753 TTCTTAGACGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCAGCACGAACACATGCCCGA
644 TTCTCCGACGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGA
* *
5172818 GCCCAGCATGTGCTGCTGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
708 GCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
5172883 CTTATACTGGGAATGAACTCCGTATGCCTATA-TCAACCCATGAAACGAGCGTGTGGGTGCTCAG
773 CTTAGACTGGGAATGAACTCCGTATGCCTA-AGTCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * ** **
5172947 CCGACAAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTATGCTGTTGATC
837 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATC
5173012 C
902 C
* * ** * *
5173013 TGCTGCCGTAACCCTCAGTTTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTCAGCCAA
1 TGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * ** * *
5173078 TCGACGAAATGAGCCGACGGGTGGACGGGCGGTAACTACGTCGGCCAGAGAGATGGGATGCGCAA
66 CCGACGAAACGAGCCGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
5173143 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TGGAGTGCCAGTGCC
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-CAGTGCCAATGCC
**
5173207 ATTTTTATTTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
195 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
5173272 CGACTCATTTTCTATTTTTCATGATTTTCAAAACATTTTACGGTTCGGGATTTTTTAAAATTTTT
260 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
** * * ** * * * *
5173337 TCAAAAGGAATTTTGGTCTGAAACTTGGTGGACGTGATCCTTGTATTTTTTTTGGCATTCATAAA
325 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * * *
5173402 AAATTTCAGCTAAAAAATCGAAGTATACAAGATTTTGTGACCATTTG-GAAAAGTGTCACCATTT
390 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
5173466 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATTCTCTTTAAGGGGGTGTGA
455 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
5173531 GTTCTCAAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCACACA
520 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
5173596 TCATGTGCACACACCCCCCCGGCCCCCTCGATCGTCGGAAA-CCCAATGCCGCCGGTTAGGTTCT
585 TCATGTGCGCACA-CCCCCCGGCCCCCCCGATCG-CCGAAACCCCAATGCCGCCGGTCAGGTTCT
** * * * **
5173660 CCGGTGATGCTCTGACGATGGTGCCCCGATGGAA-AAAAATGCGGCACCAGCACATGCCCTTGCC
648 CCGACGATGCTCCG-CGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAACACATGCCCGAGCC
5173724 CAGCATGTGCTG-TCGCAACCCTCGTTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCT
711 CAGCATGTGCTGCT-GCAA-CC-C--T-CG----G-TC-----C---G---G---TCCG-AT-CT
* * * *
5173788 TAGACTTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTAAACCAAC
749 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAT
* * * * *
5173853 GAAATGAGCGTGCGAGCT-CTCAGCCGGCCAGAGGAGCGGGATGCAG-AAGACGAGGATCGACCG
814 GAAACGAGCGTGCG-GGTGCTCAGCCGGCCAGAGGGGCGGGATGC-GCAAGCCGGGGATCGACCG
* *
5173916 GGTCCCCCTCTGCGTGCTGTCTATCC
877 GGTCCCCCTCTGCGTGCTGCCGATCC
* * * **
5173942 TACTGTCGTAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
5174007 CCGACGGAATGAGCGGGTGGGCGGGCGGGCGGGCGGGCGAGCACTACGTCGGCCTGAGAGACGGG
66 CCGAC-GAA--A-C----GAGCCGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
5174072 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ATGTG
123 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCA-GTG
* * *
5174136 CCAATGCCATTTTTATTGCTTGTAAATTCATACAATGGTCCCGTAAGCCTTCACGTGAAGTTGCA
187 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
** * * * * * *
5174201 TGGCAAGGTGACTCGTTTTCTATTTTTTATGATTTT-TAAATATTTTTGCGGTTCGGGATTTTTC
252 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAA-CTTTTTACGGTTCGGGATTTTTT
* *
5174265 AAAA-TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTT-G-
316 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
5174327 --G--C-------TT--G---------C-------AC---A-TTTGTGACCATTTGAAAAAAGTG
381 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
5174359 TCCCCATTTC-GAACACTTTAATGGCTACCGGCAGCAAACCTGTAAATTCTCAAATGCTCTTTAA
446 TCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
5174423 GGGGGTGTGAGTTCTTGAGGTTTGACGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
510 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * *
5174488 CCATCGCACGTCATGTGTGTACACCTCCCCCGGCCCCCCCGATCGTC-AGAACCCCAATGCCACC
575 CCATCGCACATCATGTGCGCACA-C-CCCCCGGCCCCCCCGATCGCCGA-AACCCCAATGCCGCC
** * * * * * *
5174552 GGTCATATTCTCCGACGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGTGCCAACAGCAGA
637 GGTCAGGTTCTCCGACGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACA
** * * *
5174617 TGCATGAGCCCAGCATGTGCTACGGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACT
701 TGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
* * * ** * ** ** * **** ** * *
5174682 CCGGATACCTA-A---GCCAT--CCGACG-A-AAC-AAG-CGGACGGGCG-GGCGAGTGAGCGGG
766 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCATGAAACGAGCGTGCGGG
** * * * * ** ****** * *
5174736 CACT-ACGCCGGCAAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT-GGTAGGTGGGT-T
830 TGCTCA-GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGC
* *
5174798 TAGGC-A-CA
894 T-GCCGATCC
* ** *** * * * * * ** ** * *
5174806 T-CT-TCATATTTCTACATGCCAATGATAT--TTTTATGGCTTGTAAATTCA-TAC-AATGGTCC
1 TGCTGCCGCAACCCT-CA-GTC--TGGTCTGATCTTA-GAC-TGGGAATGAACTCCGTAT-G--C
** * *** * * * ** **** *****
5174865 CTTAAGCC-TTC-ACGTGAA-GTTTCG--TGGCAAGACGACTCGTTTTCTA--TTTTTCATGATT
57 C-TAAGCCAACCGACG-AAACGAGCCGACGGGC-GGGCG-GGCGGGCACTACGCCGGCCA-GA--
* **** * * ** *** ** **** * * * * * * *
5174923 TTTGAAACTTTTTACGGTTCGAG-ATTTTTTAAAATTTTTTCGAAAG-GAGTTTTGGCCCCAAAC
115 ---GAGACGGGATGC-G--CAAGCCGTGGAT-CGATAGGGTGGTAGGTGGGTTTAGG-CAC-ATC
* * ** * * * * * * * *
5174986 CTCTTA-GACATGA-T-CC-TTG-TATTTTTATTGGCATGCACAA---A-AAAAT--TCAGCTAA
171 TTCATATTTC-TCAGTGCCAATGCCATTTTTA-TGGCTTGTA-AATTCATACAATGGTC-CCTTA
** * * * **** ** * * *
5175040 AAAC-TCGAAGTGTACAAGATTT--T-G--TGACCA-T--TTGAAAAAAATGTCCCCA-TTTCAG
232 AGCCTTC-ACGTG---AAG-TTTCATGGCAAGACGACTCGTT-TTCTATTTTTCACGATTTTC-G
* * * * *** * * * * * * ***
5175095 ACAC-TTTAATGGCTACTGGCAGCAAACCTGTAAGA---TCTC-AAATG-CTCTTTAAGGGGGCA
290 AAACTTTTTACGG-TTC-GG--G--ATTTTTTAAAATTTTTTCGGAAGGAGT-TTT--GGCCCCA
* * * * **** ** * * * ** *
5175154 TGAGTT-CTCGA-G-G-T--TTG-ATGAGGGTTAGG-GGGC-C-AATATA-TCAGCCAAGTACTA
346 -AACTTGGTAGACGTGATCCTTGTATTTTTGTT-GGCATGCACAAAAAAATTCAGCTAAAAACTC
*** * * * * **** *** ** * * * *
5175208 GAACCCTTCGCACATCTTATGCGCACACCCCCCGGCCCCCCCGATCGCTGCAACCCCAATGCCG-
409 GAAGTGTAC-AAGAT-TT-TGTG---A-CCATTTG-----AAAAAAG-TG--TCCCCATTTCAGA
** * * **** * *** *** ****
5175272 C-CGGTCA-GGTTCTAC-GACGATGGTGCCCCG-ACAAA-GGAAAATGCATC-ACCAGCACAT-T
459 CACTTTAATGG--CTACTGGC-A-GCAAACCTGTA-AAATCTCAAATGC-TCTTTAAGGGGGTGT
** * * * * ** * ** * *
5175330 -CCTTAGC-CCAGCATGTGCTGCCGCA-A---CCCTCAATCT--GGTACC-AGTACCCATCGCAC
518 GAGTT--CTCGAG-GTTTGATGAGGGATAGGGGGC-CAATATAAGG-GCCAAGTA-CCA--GCAC
* * * ** * * * *
5175386 CCATCGCACATCATGTGCGCATACCCCTCCGG-CCCCCCGATCACTGGTACGCTAATGTTCGTCG
575 CCATCGCACATCATGTGCGCACACCCC-CCGGCCCCCCCGATCGCCGAAACCCCAATG-CCGCCG
* *
5175450 GTCAGGTTCT-C--C---G----GCGATGGTGCCTCGACGAAGAAAAATACGGCACCAACACATG
638 GTCAGGTTCTCCGACGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATG
** * * **
5175505 CCTAAGCCCAGCATGTGCTGCTGCAACCCTCAGTCTGGTCCGATCTTAGACTACGAATGAACTCC
703 CCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
* * *
5175570 GGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCATGAAACGAGCGTGCGGGCGC
768 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGC
* * * * * ** * *
5175635 TCAGTCGGCC-GAGGGGCGAGAGGCGCAAGCTGGGGATTGGTCGGGTCCCTCTCTACGTGCTGCC
833 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCC
5175699 GATCC
898 GATCC
* * * * * *
5175704 TGCTGCCTCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATAAACTCCGTATGCTTGAGCCAA
1 TGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
5175769 CCGACGAAACGAGCGGAC-GGCAGGCGGGCAGGCACTACGCCAGCCAGAGAGATGGGATGCGCAA
66 CCGACGAAACGAGCCGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
5175833 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCT-ATGTGCCAATGAC
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCA-GTGCCAATGCC
5175897 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
195 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
5175962 TGACTCGTTTTCTACTTTTCACGA-TTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
260 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * *
5176026 TTGAAAGGCGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAA
325 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
5176091 AAAATTCAGCTAAATACTCGAAGTGTACAAGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
390 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
5176156 CAGACACTTTAATGGCTACTGGCAGCAAACCTTTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
455 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
5176221 GTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACA
520 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
5176286 TCATGTGTGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGATCTCC
585 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCC
** * * * **
5176351 GGTGATGTTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGTACCAACACATGCCCTTGCCCAG
650 GACGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAG
* * * *
5176416 TATGTGCTGCTGCAACCCTTGGTCCGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGA
714 CATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* *
5176481 CTGGGAATAAAC-CCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGGCC
779 CTGGGAATGAACTCC-GTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCC
* * * *
5176545 AGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCACCTCTACGTGCTGCCAATCC
843 AGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * ** * *
5176605 TACTGCCACAACCCTCGGTTTGGTCCAATCTTATATTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * ** ** * *
5176670 CCGACGAAACAAGCAGGCGGGCGGGTGGATGGGCACTACGCTAGCCAAAGAGACGGGATGCGAAA
66 CCGACGAAACGAGCCGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
5176735 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATTTTCATATTTCTAAGTGCCAATGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCAGTGCCAATGCCA
5176800 TTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
196 -TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
**
5176865 CGACTCGTTTTCTATTTTTCACGAATTTT-GAAACTTTTTACGGTTCAAGA-TTTTTACAAATTT
260 CGACTCGTTTTCTATTTTTCACG-ATTTTCGAAACTTTTTACGGTTCGGGATTTTTTA-AAATTT
* * * * *
5176928 CTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGTCGTGATCCTTGTATTGTTGTTGACATGCACA
323 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
5176993 AAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
388 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
5177058 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
453 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
5177123 GAGTTCAT-GAGGTTTGATGAGGGGTAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
518 GAGTTC-TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * *
5177187 ACATCATGTGTGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAAGTTC
582 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTC
*
5177252 T-C--C-A------GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCTGAGCCC
647 TCCGACGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCC
* * * ** *
5177307 AGCATGTGCTG-TCGCAACCCTCGTTCTGCT-CGATCTTAGACTATGATTGAACTCCGTATGCTT
712 AGCATGTGCTGCT-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * *
5177370 AGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAACCGG
776 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGG
* * * * * * *
5177435 CCAGAGTGGCAGGATG-GCAAACCGAGGATCGACCGGGTCCCCCTCTGCATCCTGTCGATCC
841 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
5177496 TACTACTGCAACCCTC-GATCTGGTCTAATCTTAGACTGCGAATGAACTCCATATGCCTAAGCCA
1 TGCTGCCGCAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * ** * * * * * *
5177560 ATCGATGAAACGTGTGGGCAGGCGGGCAGGCAGGCACTACGGCAGCCAGAGAGACGGGATGCGCA
65 ACCGACGAAACGAGCCGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
5177625 AGCCATGGATCGATAGGGTGGTAGCTAGGTTTAGGCACATCTTCATATTTCT-ATGTGCCAACGC
130 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCA-GTGCCAATGC
5177689 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
194 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * * * *
5177754 ATGACTCGTTTTCTATTTTTCATGATTTTGGAAACTTTTTGCGGTTTGGGATTTTTAAAAATTCT
259 ACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * **
5177819 TTC-GAATAGAATTTTGGCCCCAAACTTGGTAGACATGATCCTTGTGCTTTTGTTGGCATGCA-A
324 TTCGGAA-GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
5177882 AATAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
388 AA-AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
5177947 TTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAAGGCTCTTTAAGGGGGTG
452 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * * *
5178012 TGAGTTCTCAAGGTTTTATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGAACCCATCAC
517 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* ** * * * *
5178077 ACATCATGTGCGTATTCCCCCCAGCCCCCCCGATCGCTGGAATCCCAATGCCGCCGGTCAGGTTC
582 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTC
* * **
5178142 TCCGGCGATGCT-C-C------G----G-CGAAGAATAATGCGGCACCAACACATGTTCGAGCCC
647 TCCGACGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCC
*** ** * * * *
5178194 AGCATGTGCTGCCATAACCCTCTATTCGGTCCAATCCTAGATTGGGAATGAACTCCGTATGCTTA
712 AGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * *
5178259 GACTGGGAATGAACTCCGTATGCCTGAGTCAACCCATGAAACGAGTGTGCGGGTGCTCAGTCGGT
777 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGC
* * ** * *
5178324 CGGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTG-TGATCC
842 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
5178384 TGCTGTCGCAACCCT-TGATCTGGTCCT-ATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCC
1 TGCTGCCGCAACCCTCAG-TCTGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * **
5178447 AACCGACGAGACGAACGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACTCGATGCGC
64 AACCGACGAAACGAGCCGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
5178512 AAGCCGTGGATCGATAGGGTGGCA-GTGGGTTTAGGCACATCTTCATATTTTTGCA-TGCCAGTG
129 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-CAGTGCCAATG
5178575 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
193 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * ** *
5178640 GACGACTTGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGATTCGGGATTTTTTAAAATTT
258 GACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* *
5178705 TTTCGGAAGGTGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
323 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * * * *
5178770 AAAAAATTTAGTTAAAAACTCGAAGTGTACAAGGTTTTGTGACCTTTTGAAAAAAGTGTCGCCAT
388 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
5178835 TTTAGACACTTTATTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGT
453 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
5178900 GAGTTCTCGAGGTTTGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCA
518 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
5178965 CATCATGTGCGCACACCCCCCCGGCCCTCTCGATCGCC-AGAACCCCAATGCTGCCGGTCAGGTT
583 CATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGA-AACCCCAATGCCGCCGGTCAGGTT
*
5179029 CT-C--C---G----GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCTCGAGCC
646 CTCCGACGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCC
* ** * *
5179084 CAGCATGTGCTACCACAACCCTCGGATTC-GTCCGATCTTAGACTGGGAATGAACTTCGTATGCT
711 CAGCATGTGCTGCTGCAACCCTCGG-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
*
5179148 TAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCG
775 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCG
* * * * * *
5179213 GCCAAAGGGAG-GGGATGTGCAAGACGGGGATCGACCGGGTCCCCCTCTGCATGCTACCTATCC
840 GCCAGAGGG-GCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
5179276 TGCTGCCGCAAGCTTCGGTCCGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTCAGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * **** * *
5179340 ACCGACGAAACGAGCAGGCGGGCAAATGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGTGCA
65 ACCGACGAAACGAGCCGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
5179405 AGCCGTGGATAGATAGGGTTGTAGGTGGGTTTAGGCACAACTTCATATTTCTGCA-TGCCAATGC
130 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-CAGTGCCAATGC
*
5179469 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAG
194 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
*
5179534 ACGACTCGTTTTCTA-TTTTCTACGATTTTGGAAACTTTTTACGGTTCGGGATTTTTTAAAAATT
259 ACGACTCGTTTTCTATTTTTC-ACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTT-AAAATT
*
5179598 TTTT-GGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
322 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * *
5179662 AAAAAAATTCAGCTAAAAACTCGATGTGTACTAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCA
387 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
5179727 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTG
452 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
5179792 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
517 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
*** * *
5179857 ACATCATGAATGCACA-CCCCCAGCCCCCCCGATTGCCG-AACCCCAATGCCGCCGGTCAGGTTC
582 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTC
** *
5179920 TCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAACATGCGGCACCAACACATGCCCGAGCC
647 TCCGACGATGCTCCG-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCC
** * *
5179985 CAGCATGTGCTGCCCCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGC--
711 CAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* *
5180048 ---CT---AA-G---T-C--A-ACC----T--A--CA--AAACGAGCGTGCGGGTGTTCAGCCGG
776 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGG
* * ** ** * * **
5180089 CCAAAGGGGCAGGATGCGCAAGCCGACGATCGGTCGGGTCTCCCTCTGCGTACTGTGGATCC
841 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * *
5180151 TGCTGCTGCAACCCTC-GTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGACAA
1 TGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
5180215 --G-CG--ACGA---AACGGGTGGGCGGGCGGGCACTACGTC-GCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCCGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
5180271 -CTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACGTGCCAATGC
131 GC-CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCA-GTGCCAATGC
* * * *
5180334 CATTTTTATGGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCACTTGAAGTTTCACGGCATG
194 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
** * *
5180399 ACGACTCGTTTTCTATTTTTCACGATTTTC-AAAAGTTTTACGGTTTGGGATTTTTTAAAACTTT
259 ACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * * *
5180463 TTCGAAAGTAGTTTTGGCCCCAAACTTAGTAGACATGATCCTTGTATTTTTGTTGGCATGGACAA
324 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
5180528 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTCACCATTTGAAAAAGGTGTCCCCATT
389 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
5180593 CCAGACAGTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTG
454 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
5180657 AGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
519 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
5180722 ATCATGTGCGCACAACCCCCCGG-CCCCCCGATCGTCGAAACCTCAATGTCGCTGGTCAGGTTCT
584 ATCATGTGCGCAC-ACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCT
* * *
5180786 CCGACGATGCTCCGGTGATGGCGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCC
648 CCGACGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCC
** * * * * *
5180851 AGCATGTGCTGCCACAACCCTCGGTCTGGTCTGATCTTGGACTAGGAATGAACTTCGTATGCTTA
712 AGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
5180916 GATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCTTGCGGGTGCTCAGCCAGC
777 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGC
* * ** * * * * * * *
5180981 CAAAGGGGCGGGATGCGAAAGTTGAGGTTAGGCCTGGTCCCCCTCTACGTGCTGCCAATCC
842 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
5181042 TACTACCGCAACCCTC-GATCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCATAAGCCA
1 TGCTGCCGCAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
5181106 ACCGACGAAACGAG-CAAGCGGGCAGGCGGGCGGGCACTACGCCGACCAGAGATACGGGATGCGC
65 ACCGACGAAACGAGCCGA-CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
**
5181170 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTCCGGCACATCTTCATATTTCTGC-GTGCCAATG
129 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-CAGTGCCAATG
*
5181234 CCATTTTTATGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
193 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* ** *
5181299 GACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGGTTCGAGATTTTTTAAAATTT
258 GACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
*
5181364 TTTCGGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
323 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
5181429 AAAAACTTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
388 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
5181494 TTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
453 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
5181559 GAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTATCAGCACCCATCGCA
518 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
5181624 CATCATGTAG-GCACACCTCCCCGGCCCCCCCAATCGTCGGAACCCCAATACCGCCGGTCAAGTT
583 CATCATGT-GCGCACACC-CCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTT
** * * * * * * * **
5181688 CTTTGGCGATGCTCCGGTGATGTTGCCCTGATGAAAAAAAATGCAGCACCAACACATGCCTAAGC
646 CTCCGACGATGCTCC-GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGC
* * **
5181753 CCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCT
710 CCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * ** * *
5181818 TAGATTGGGAATGAACTCCGTATGCCTAATTCAACCCGCGAAACGAGCGTGCGGGTGCTCAACCA
775 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCG
* ** ** * *
5181883 GCCAGAGGGGCGGGATGCACAAGCCGACGATCGGTCGGGTCCCCCTTTGCGTGCTGCCAATCC
840 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
5181946 TGCTACCACAA-CC-C--TC-GGTCTGATCTTAGACTGGGAAGGAGCTCCGTATGCCTCAGCCAA
1 TGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
5182006 CCGAGGAAACGAG-CGAGCAGGCGGGCGGGAGGGCACTACGTCGACCAGAGAGACGGGATGCGCA
66 CCGACGAAACGAGCCGA-CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*
5182070 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-TGCCAATGC
130 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-CAGTGCCAATGC
* * *
5182134 CTTTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCCTCACGTGAAGTTTCATGGCA
194 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
5182197 TGCACAAAAA
Statistics
Matches: 17057, Mismatches: 2224, Indels: 1257
0.83 0.11 0.06
Matches are distributed among these distances:
853 18 0.00
854 5 0.00
855 39 0.00
856 13 0.00
857 13 0.00
858 72 0.00
859 204 0.01
860 16 0.00
861 15 0.00
862 69 0.00
863 113 0.01
864 297 0.02
865 403 0.02
866 197 0.01
867 282 0.02
868 114 0.01
869 29 0.00
870 85 0.00
871 86 0.01
872 23 0.00
873 96 0.01
874 52 0.00
875 273 0.02
876 2 0.00
877 33 0.00
878 81 0.00
879 224 0.01
880 8 0.00
881 4 0.00
882 22 0.00
883 555 0.03
884 426 0.02
885 26 0.00
886 120 0.01
887 550 0.03
888 651 0.04
889 151 0.01
890 736 0.04
891 525 0.03
892 307 0.02
893 497 0.03
894 38 0.00
895 357 0.02
896 129 0.01
897 83 0.00
898 372 0.02
899 488 0.03
900 397 0.02
901 430 0.03
902 1246 0.07
903 1313 0.08
904 2087 0.12
905 274 0.02
906 419 0.02
907 289 0.02
908 33 0.00
909 40 0.00
910 50 0.00
911 53 0.00
912 472 0.03
913 5 0.00
914 6 0.00
915 317 0.02
916 246 0.01
917 2 0.00
918 2 0.00
921 1 0.00
923 2 0.00
924 1 0.00
927 4 0.00
928 3 0.00
929 191 0.01
930 6 0.00
932 1 0.00
935 1 0.00
936 53 0.00
937 213 0.01
938 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
TGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCCGACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCAGTGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCG
ACGATGCTCCGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCA
TGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGA
GGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
Found at i:5173789 original size:26 final size:26
Alignment explanation
Indices: 5173760--5173838 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
5173750 CCGATCCGAT
5173760 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5173786 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5173812 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5173838 C
1 C
5173839 CTAAGTAAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5175515 original size:175 final size:174
Alignment explanation
Indices: 5175210--5175543 Score: 427
Period size: 175 Copynumber: 1.9 Consensus size: 174
5175200 AAGTACTAGA
* * *
5175210 ACCCTTCGCACATCTTATGCGCACACCCCCCGGCCCCCCCGATCGCTGCAACCCCAATGCCGCCG
1 ACCCATCGCACATCATATGCGCACACCCCCCGGCCCCCCCGATCACTGCAACCCCAATGCCGCCG
* * * * * *
5175275 GTCAGGTTCTACGACGATGGTGCCCCGACAAAGGAAAATGCATCACCAGCACATTCCTTAGCCCA
66 GTCAGGTTCTACGACGATGGTGCCCCGACAAAGAAAAATACAGCACCAACACATGCCTAAGCCCA
5175340 GCATGTGCTGCCGCAACCCTCAATCTGGTACCAGTACCCATCGC
131 GCATGTGCTGCCGCAACCCTCAATCTGGTACCAGTACCCATCGC
* * ** * * * *
5175384 ACCCATCGCACATCATGTGCGCATACCCCTCCGG-CCCCCCGATCACTGGTACGCTAATGTTCGT
1 ACCCATCGCACATCATATGCGCACACCCC-CCGGCCCCCCCGATCACTGCAACCCCAATG-CCGC
* * * * *
5175448 CGGTCAGGTTCTCCGGCGATGGTGCCTCGACGAAGAAAAATACGGCACCAACACATGCCTAAGCC
64 CGGTCAGGTTCTACGACGATGGTGCCCCGACAAAGAAAAATACAGCACCAACACATGCCTAAGCC
* *
5175513 CAGCATGTGCTGCTGCAACCCTCAGTCTGGT
129 CAGCATGTGCTGCCGCAACCCTCAATCTGGT
5175544 CCGATCTTAG
Statistics
Matches: 134, Mismatches: 24, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
174 45 0.34
175 89 0.66
ACGTcount: A:0.22, C:0.38, G:0.21, T:0.19
Consensus pattern (174 bp):
ACCCATCGCACATCATATGCGCACACCCCCCGGCCCCCCCGATCACTGCAACCCCAATGCCGCCG
GTCAGGTTCTACGACGATGGTGCCCCGACAAAGAAAAATACAGCACCAACACATGCCTAAGCCCA
GCATGTGCTGCCGCAACCCTCAATCTGGTACCAGTACCCATCGC
Found at i:5175578 original size:26 final size:26
Alignment explanation
Indices: 5175549--5175601 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5175539 CTGGTCCGAT
5175549 CTTAGACTACGAATGAACTCCGGATG
1 CTTAGACTACGAATGAACTCCGGATG
** *
5175575 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGGATG
5175601 C
1 C
5175602 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTACGAATGAACTCCGGATG
Found at i:5176478 original size:26 final size:26
Alignment explanation
Indices: 5176449--5176501 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
5176439 CCGATCCGAT
* *
5176449 CTTAGATTGGGAATGAACTCC-GTATG
1 CTTAGACTGGGAATAAAC-CCTGTATG
5176475 CTTAGACTGGGAATAAACCCTGTATG
1 CTTAGACTGGGAATAAACCCTGTATG
5176501 C
1 C
5176502 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACCCTGTATG
Found at i:5178267 original size:26 final size:26
Alignment explanation
Indices: 5178231--5178281 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5178221 GGTCCAATCC
*
5178231 TAGATTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
5178257 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
5178282 CTGAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:5179150 original size:26 final size:26
Alignment explanation
Indices: 5179120--5179172 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5179110 TTCGTCCGAT
*
5179120 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5179146 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5179172 C
1 C
5179173 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5181819 original size:26 final size:26
Alignment explanation
Indices: 5181790--5181842 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5181780 CCGGTCTAAT
5181790 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5181816 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5181842 C
1 C
5181843 CTAATTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5184349 original size:869 final size:869
Alignment explanation
Indices: 5182623--5184440 Score: 2623
Period size: 869 Copynumber: 2.1 Consensus size: 869
5182613 GTGTGGAGGT
*
5182623 GGTGTGAGTTCTCGACGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
1 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* *
5182688 TCGCACATCATGTGCGTACACCCCCCGGGCCCCCCGATCCCCGGAACCCCAATACCGCCGGTCAA
66 TCGCACATCATGTGCGCACACCCCCCAGGCCCCCCGATCCCCGGAACCCCAATACCGCCGGTCAA
* * * * * *
5182753 GTTCTTCGACGATGCTCCGGCGATGGTCCATGGCGAAGAAAAATGTAGCACCAGCAAATGCTCGA
131 GTTCTTAGACGATGCTCCGACGATAGTCCACGGCGAAGAAAAATGTAGCACCAGCAAATGCCCAA
* * ** *
5182818 GCCCAGCATGTGCTGCCGTAACCCTTGGTCCGGTCCGACCATTGACTGGGAATGAACTCCGTATG
196 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGACCATTGACTGGGAATGAACTCCATATG
* * * ** *
5182883 CCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGTCGGCCAGAGGGGTGAGATGCGTAAGT
261 CCTAAGTCAACCCATGAAACGAGCGTACGGGCACTCAGCCGGCCAGAGGGGCGAGATGCACAAGC
* * * * *
5182948 CGGGGATCGACAGGGTCCCTCTCTGCGTGCTGTCGATCCTGCTACCACAACCCTCAGTCTGGTCT
326 CGAGGATCGACAGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCACAACCCTCAATCCGGTCT
* * *
5183013 GATCTTAGACTAGGAATTAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCAGGCGAGCGGGC
391 GATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCA-G-GA----GC
* *
5183078 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAACCATGGATCGATAAGGTGGTAGGTG
450 GGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAACCATGGATCGATAAGGTGGTAGGTG
* * * *
5183143 GGTTTAGGCACATCTTTATATTTCTGTGTGCCAATGCCATTTTTATGGCTTTTGAATTCATATAA
515 GGTTTAGGCACATCTTGATATTTCTGTGTGCCAATGCCATTTTTATGGCTTATAAATTCATACAA
* *
5183208 TAGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
580 CAGTCCCTTAAGCCTTCACGTAAAGTTCCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * **
5183273 CCAAACTTTTTGCAGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
645 CCAAACTTTTTACAGTTTGGGATTTTTTAAAATTATTTCAGAAGGAGTTTTCACCCCAAACTTGG
* * * *
5183338 TAGACGTGATCCTGTCATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
710 TAAACGTGATCCTGTCATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
* *
5183403 AAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAAACACTTTAGTAGCTACTGGCAGCAA
775 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATAGCTACTGGCAGCAA
* * * *
5183468 ACCTATAAAATCTCAAATGCTCTTTAGGGG
840 ACCGATAAAATCTCAAACGCTCTTCAAGGG
*
5183498 GGTGTGAGTTCTCGAGGTTTGATTAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
1 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
** *
5183563 TCGCACATCATGTGCGCACA-CCCCCAGGCCCCCCAGATCGTCGGAACCCCAATGCCGCCGGTC-
66 TCGCACATCATGTGCGCACACCCCCCAGGCCCCCC-GATCCCCGGAACCCCAATACCGCCGGTCA
* * *
5183626 AGTTTCTCTAG-CGATGCTCCGACGATAGTGCCCCGGTGAAG-AAAAT-TACGGCACCAGCACAT
130 AG-TTCT-TAGACGATGCTCCGACGATAGT-CCACGGCGAAGAAAAATGTA--GCACCAGCAAAT
* *
5183688 GCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATC-TTAGATTGGGAATGAACT
190 GCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGACCATT-GACTGGGAATGAACT
* * *
5183752 CCATATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
254 CCATATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTCAGCCGGCCAGAGGGGCGAGATG
* **
5183817 CACAAGCCGAGGATCGACTA-GGTCCCCCTCTACGTGCTAG-CGATCCTTCTACTGCAACCCTCA
319 CACAAGCCGAGGATCGAC-AGGGTCCCCCTCTACGTGCT-GTCGATCCTGCTACCACAACCCTCA
*
5183880 ATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCA-G
382 ATCCGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCAGG
* * * * *
5183944 A-CGGGTAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
447 AGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAACCATGGATCGATAAGGTGGTAG
*
5184008 GTGGGTTTAGGCACATCTTGATATTTCTGTGTGCCAGTGCCATTTTTATGGCTTATAAATTCATA
512 GTGGGTTTAGGCACATCTTGATATTTCTGTGTGCCAATGCCATTTTTATGGCTTATAAATTCATA
* * * *
5184073 CAACGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGACGACTGGTTTTTTATTTTTCACGA
577 CAACAGTCCCTTAAGCCTTCACGTAAAGTTCCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
** * * *
5184138 TTTTTGAAACTTTTTACGGTTTTGGATTTTTTAAAATTATTTCAGAAGGATTTTTCACCCCAAAC
642 -TTTCCAAACTTTTTACAGTTTGGGATTTTTTAAAATTATTTCAGAAGGAGTTTTCACCCCAAAC
*
5184203 TTGGTAAACGTGATCATTGT-ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
706 TTGGTAAACGTGATC-CTGTCATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
* *
5184267 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
770 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATAGCTACTGGC
* *
5184332 AGCAAACCGGTAAAATCTCAAACGGTCTTCAAGGG
835 AGCAAACCGATAAAATCTCAAACGCTCTTCAAGGG
5184367 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
1 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
5184432 TCGCACATC
66 TCGCACATC
5184441 TTCTACGCAA
Statistics
Matches: 844, Mismatches: 88, Indels: 28
0.88 0.09 0.03
Matches are distributed among these distances:
868 175 0.21
869 272 0.32
870 3 0.00
873 2 0.00
874 17 0.02
875 134 0.16
876 239 0.28
877 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (869 bp):
GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
TCGCACATCATGTGCGCACACCCCCCAGGCCCCCCGATCCCCGGAACCCCAATACCGCCGGTCAA
GTTCTTAGACGATGCTCCGACGATAGTCCACGGCGAAGAAAAATGTAGCACCAGCAAATGCCCAA
GCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGACCATTGACTGGGAATGAACTCCATATG
CCTAAGTCAACCCATGAAACGAGCGTACGGGCACTCAGCCGGCCAGAGGGGCGAGATGCACAAGC
CGAGGATCGACAGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCACAACCCTCAATCCGGTCT
GATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCAGGAGCGGGCAG
GCACTACGCCGGCCAGAGAGACGGGATGCGCAAACCATGGATCGATAAGGTGGTAGGTGGGTTTA
GGCACATCTTGATATTTCTGTGTGCCAATGCCATTTTTATGGCTTATAAATTCATACAACAGTCC
CTTAAGCCTTCACGTAAAGTTCCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTCCAAAC
TTTTTACAGTTTGGGATTTTTTAAAATTATTTCAGAAGGAGTTTTCACCCCAAACTTGGTAAACG
TGATCCTGTCATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATAGCTACTGGCAGCAAACCGAT
AAAATCTCAAACGCTCTTCAAGGG
Found at i:5184919 original size:509 final size:509
Alignment explanation
Indices: 5183945--5184949 Score: 1661
Period size: 509 Copynumber: 2.0 Consensus size: 509
5183935 AACGAGCAGA
* *
5183945 CGGGTAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
1 CGGGTAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGCTGGTAGGT
* * *
5184010 GGGTTTAGGCACATCTTGATATTTCTGTGTGCCAGTGCCATTTTTATGGCTTATAAATTCATACA
66 GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTATAAATTCATACA
* *
5184075 ACGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGACGACTGGTTTTTTATTTTTCACGATT
131 ACGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
*
5184140 TTTGAAACTTTTTACGGTTTTGGATTTTTTAAAATTATTTCAGAAGGATTTTTCACCCCAAACTT
196 TTTGAAACTTTTTACGGTTTCGGATTTTTTAAAATTATTTCAGAAGGATTTTTCACCCCAAACTT
*
5184205 GGTAAACGTGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGT
261 GGTAAACGTGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGCGT
5184270 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
326 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * * *
5184335 AAACCGGTAAAATCTCAAACGGTCTTCAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
391 AAACCGGTAAAATCTCAAAAGCTCTTCAAGGGGGTGTGAGTTCTCAAGATTTGATGAGGGATAGG
**
5184400 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTCTACGCAAGGG
456 GGAACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTCTACGCAAGGG
* *
5184454 CGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGCTGGTAGGT
1 CGGGTAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGCTGGTAGGT
*
5184519 GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
66 GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTATAAATTCATACA
* * *
5184584 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
131 ACGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * * ***
5184649 TTTGAAACTTTTTACGG-TTCGAGGTTTTTTTAAATTTTTTCGGAAGGATTTTTGGTCCCAAACT
196 TTTGAAACTTTTTACGGTTTCG-GATTTTTTAAAATTATTTCAGAAGGATTTTTCACCCCAAACT
* * * * **
5184713 TGGTAGACGTGATCCTTGTATTTTTTTTGGTATGCACAAAAAAATTCAGCTAAAAACTTGAAGCG
260 TGGTAAACGTGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGCG
5184778 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
325 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
5184843 CAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCAAGATTTGATGAGGGGTAG
390 CAAACCGGTAAAATCTCAAAAGCTCTTCAAGGGGGTGTGAGTTCTCAAGATTTGATGAGGGATAG
5184908 GGGAACAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
455 GGGAACAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
5184950 ATGTGCGCAC
Statistics
Matches: 458, Mismatches: 37, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
508 3 0.01
509 455 0.99
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.31
Consensus pattern (509 bp):
CGGGTAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGCTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTATAAATTCATACA
ACGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
TTTGAAACTTTTTACGGTTTCGGATTTTTTAAAATTATTTCAGAAGGATTTTTCACCCCAAACTT
GGTAAACGTGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGCGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCGGTAAAATCTCAAAAGCTCTTCAAGGGGGTGTGAGTTCTCAAGATTTGATGAGGGATAGG
GGAACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTCTACGCAAGGG
Found at i:5185149 original size:26 final size:26
Alignment explanation
Indices: 5185113--5185165 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5185103 CTGGTCTGAT
* *
5185113 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5185139 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5185165 C
1 C
5185166 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5186431 original size:26 final size:26
Alignment explanation
Indices: 5186395--5186447 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5186385 GTTGACTTAG
5186395 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* **
5186421 GCATATGGAGTTCATTCGTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5186447 G
1 G
5186448 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5187321 original size:26 final size:26
Alignment explanation
Indices: 5187292--5187344 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5187282 GGTGACTTAG
* *
5187292 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
5187318 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
5187344 G
1 G
5187345 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:5190010 original size:26 final size:26
Alignment explanation
Indices: 5189974--5190026 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5189964 GTTGACTTAT
5189974 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
5190000 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
5190026 G
1 G
5190027 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:5191788 original size:26 final size:26
Alignment explanation
Indices: 5191752--5191804 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5191742 GTTGACTTAG
*
5191752 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5191778 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5191804 G
1 G
5191805 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5192208 original size:903 final size:894
Alignment explanation
Indices: 5186365--5194328 Score: 9369
Period size: 877 Copynumber: 8.9 Consensus size: 894
5186355 CGACTGAACG
**
5186365 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGA
** * * ** * * *
5186430 GTTCATTCGTAGTCTAAGATCGGATCGGACTGAGGGTTACGACAGCACATACTGGGCTCGGGCAT
66 GTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATGCTAGGCTCGGGCAT
* *
5186495 GTGCTGGTGCCACATTTTTCTTCG-CTGGGGCACCATCGTC--G-A-------AAAACCTGACCG
131 GTGTTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGTCAAGCATCGTCGGAGAACCTGACCG
* * *
5186549 ACGACATTGGGGTTCCTG-CGATCGGGGGGGCCGGGGGGTGTGCGCACATTATGTGCGATGGGTG
195 GCGGCATTGGGGTTCC-GACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * * * * * *
5186613 CTTGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATGAAACCTCGAGTACTCACAGCCCTTTA
258 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
* * *
5186678 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAACGTGTCTGAAATGGGGACACT
323 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACT
* * * * * *
5186743 TTGTTGAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCGTGCCA
388 TTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
5186808 ACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAA-TCCTTCTGAAAAAACTTTTTAA
453 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAA--TTTTAA
* * * * * *
5186872 CACAATCCCAAACCG-AAAAAGTTTCAAAAAATCATGAAAAATCAAAAAATGAGTCGTCCTGCTC
516 -AAAATCCCGAACCGCAAAAAGTTTC-AAAAATCGTGAAAAAT-AGAAAACGAGTCGTCTTGC-C
*
5186936 ATGCACACTTCAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
577 ATG-AAACTTC-ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * *
5187001 TGGGCATGCAGAAATATGAAAGATGTGCCGAAACCCA-CTGACACACCCTATCAGATGCAC-GCT
640 T-GGCACACAGAAATATG-AAGATGTGCCTAAACCCACCT-AC-CACCCTATC-GATCCACGGC-
* * * *
5187064 TTGCGAATCCCATTTCTCTGGCCG-CATAAGTGCCCGCGCCGCCCGCTTCG-TTCAGTCGGTTGG
699 TTGCGCATCCCGTCTCTCTGGCCGACGT-AGTGCCCGC-CCGCCCGC-TCGTTTC-GTCGGTTGG
* * *
5187127 CTTAGGCATACAGAGTTCATTCCCACGTCTACAGATC-GAACC-GAACCAAGGGTTGCGACT-GC
760 CTTAGGCATACGGAGTTCATTCCCA-GTCTA-AGATCAG-ACCAG-ACCGAGGGTTGCGGCTAGC
* * * * *
5187189 AAGATCGGCAAGCACGTAGGGGGGGACCCGATCGATCCTCGGCTTGTGCAT-CCGCCCCTCTGGC
821 AGGATCGGC-AGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTATGCATCCCGCCCCTCTGGC
* *
5187253 CGG-TGTGCGC
885 CGGCTGAGC-A
* * *
5187263 CCCGCACACTCGTTCCATGGG-TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG-
* * * * * * ** * *
5187326 AATTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGATAG-ACATGCTGGGCTCGAGCA
65 AGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATGCTAGGCTCGGGCA
* * **
5187390 TGTGCTGGTGGCAACATTTTTCTTCACCGGGGCACCA---T----CA-C--CGGAGAACCTGA-C
130 TGTGTTGGT-GCCACATTTTTCTTCGTCGGGGCACCATCGTCAAGCATCGTCGGAGAACCTGACC
* ** * ** * * * *
5187444 GAC-AAATTGGGGTTCTGGTGATCGAGGGGCCCGGGGGTGCGCGCACATGATGTGCGATAGGTGC
194 GGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * * *
5187508 TGGCA-TTGGCACTTATATTGGCCCCCTAT--CTCACCAAACCTCGAGAACTCACA-CCCCTTAA
259 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
* *
5187569 AGAGCATTTGAGATTTTACAGGTTTGTTG-CAGTAGCCATTAAAGTCTCTGAAA-AGGGGACACT
324 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATA-GGGACACT
* *
5187632 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCA
388 TTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-
* * * *
5187697 AAAAAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCCAAACTCCTTCCGTAAAAATTTTAA
452 -AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAA
* * * ** * *
5187762 AAAATCCCAAACCACAAAAAGTTTTAAAAATTATGAAAAATAGAAAACGAGTCATCTTACCATGA
516 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * *
5187827 AACTTTACGTGAAGGCTTATGGGACCATTGTATGAATTTAAAAGTCATAAAAATGGCATTGGCAC
581 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * **
5187892 ATAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTTG
646 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
5187957 TCTCTCTGGCCGGCGTAGTGCCCGCCCGACCGCTCGTTTCGT-GGATTGGCTTAGGCATACGGAG
711 TCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGG-TTGGCTTAGGCATACGGAG
* * * ** * *
5188021 TACATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTAGC-AGCAGCATTGGCAGCACGCAGA
775 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCTAGCAGGATCGGCAGCACGCAGA
* * * *
5188085 GGGGGACCCGA-CTGATCCCCGACTTATGCATCCCG-TCCTCTAGCCGGCTGAGCC
840 GGGGGACCCGATC-GATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGGCTGAGCA
** * * *
5188139 CCCGCACGCTCGTTTTATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCCAAGCATACGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGA
* * * ** *
5188204 GTTCATTCCCAGTCTAAGATCGAATCGGA-CAGAGGGTTGTGGCAGCACATGCTAGGCTCAGGCA
66 GTTCATTCCCAGTCTAAGATCGGACCAGACCA-AGGGTTACGGCAGCACATGCTAGGCTCGGGCA
* ** ** * * *
5188268 TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGATC
130 TGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTC-AAGCATCGTCGGAGAACCTGACC
* * *
5188333 GACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGATGTGCGCACATGATGTGCGATGGGTG
194 GGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
** *
5188398 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTGACACCCCCTTA
258 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
* * * * * *
5188463 ATGATCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTATCTAAAATGGGGACACT
323 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACT
* *
5188528 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTCT-TGCATGCC
388 TTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTT-TGTGCATGCC
* * * * * *
5188592 AAAAAAAAATACATGGATCACATCTACCAAGTTTGGGGCCGAAACTCCTTCTGAAAAAATTTCAA
452 -AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAA
* ** ** * * *
5188657 AAAATGCCGAACCTTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCGTGA
516 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * * * **
5188722 AATTTCACGTGCAGTCTTAAGGGACCATTGTATGATTTTACAAGGCATAAAAATCACATTGGCAC
581 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* **
5188787 ACAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTTG
646 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
5188852 CCTCCCTGGCCGACGTAGTGCCCGCCCGCCTGCCTGCCTGCTTGTTTCGTCGGTTGGCTTAGGCA
711 TCTCTCTGGCCGACGTAGTGCCCGCCCG-C--CC-G-CT-C--GTTTCGTCGGTTGGCTTAGGCA
** * * * *
5188917 TACGGAGTTCATTCCCAGTCTAAGATTGGACC-GAACCGAGGGTTACGG-TCGTAGGATCGGTAG
768 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCTAGCAGGATCGGCAG
* * *** * * * *
5188980 CACGCAGAGGGTGACCC-AGTCGATCCTCGGCTTGCACATCCTGCCCCTATGGCCGTCTGAGCG
832 CACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGGCTGAGCA
*
5189043 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTTATC-G
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-CAG
* * * *
5189107 AGCTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCA
65 AGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATGCTAGGCTCGGGCA
* * * * * * *
5189172 TGTGCTGTTGCCGCATTTTTCTTCGTCGGGGCACCAACATCGGAGCATCGCCGGAGAACCTGACC
130 TGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTC-AAGCATCGTCGGAGAACCTGACC
*
5189237 GGCGGCTTTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
194 GGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
** * *
5189302 CTGGTACTTATCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTA
258 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
* * * *
5189367 AAGAGCATTTGAGATTTTACAGGTTTGTTGCCGGTAGCCATTAAAGTGTCCGAAATGGGGACACT
323 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACT
* * * *
5189432 TTTTTCAAACGGTCACAAAATCTAGTACACTTCGAGTTTATAGCTGAA-TTTTTTGTGCATGCCA
388 TTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
5189496 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCGAAAAAATTTTAAAA
453 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAA
* ** * *
5189561 AATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAGAACGAGTCGTCTTGCCGTGAAA
518 AATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * * *
5189626 CTTCACGTGAAGGCTTAAAGGACGATTGCATGAATTTATAAGCCATAAAAATGGCATTGGCACGC
583 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
* * *
5189691 AGAAATATGAAGATGTGCCTAAACCCACCTACC-CCTTATCGATCCACGGCTTGTGCATCCTGTC
648 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
5189755 TCTTTGGCCGCCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCATTTCGTCGGTTAGCTTAGGCATA
713 TCTCTGGCCGACGTAGT----GCCCGCCCGCCCGCTCG----TTTCGTCGGTTGGCTTAGGCATA
* * * * * * * * * *
5189820 CGGAGCTCATTTCCAGTGTAAGAAT-GGACCACACCGAGGGATACAG-TAGCAGGATTGGTAGCA
770 CGGAGTTCATTCCCAGTCTAAG-ATCAGACCAGACCGAGGGTTGCGGCTAGCAGGATCGGCAGCA
* * * ** ** * *
5189883 CGGAGAGAGGGAACCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCG
834 CGCAGAGGGGGACCCGATCGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGGCTGAGCA
* * * * * *
5189944 CCTGCACGCTCATTTCGTGGGTTGACTTATGCATACAGAGTTCATCCCCAGTCTAAGCATACGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGA
* * *
5190009 GTTCATTCCCAGTCTAAGATCGGA-CAGGACCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCA
66 GTTCATTCCCAGTCTAAGATCGGACCA-GACCAAGGGTTACGGCAGCACATGCTAGGCTCGGGC-
* * ** * ** *
5190073 AT-TGCTGGTGCCGCATTTTTGGTCG-CCGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGAC
129 ATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG-TCAAGCATCGTCGGAGAACCTGAC
* * * *
5190136 CGACGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCAGAAGATGTGCGATGGGTG
193 CGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
5190201 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
258 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
* * *
5190266 AAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACT
323 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACT
* * *
5190331 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCA
388 TTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* ** * * * *
5190396 AAAAAAATACAAGTATCACGTCTACCAAGTTTGGGGTGAAAAATCCTTCTGAAATAATTTTAAAA
453 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAA
* * * *
5190461 AATCCAGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAA
518 AATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
5190526 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACACGCCATAACAATGGCATTGGTACAC
583 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
* * * *
5190591 AAAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACAGCTTGCGCATCTCGTC
648 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
5190656 TCTCTAGCCGGCGTAGTGCCTGCCCGCCCACCCGCCCTCTCGTTTCGTCGGTTTGCTTAGGCATA
713 TCTCTGGCCGACGTA--G--TGCCCG----CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * ** * * * *
5190721 CAGAGTTCATTCCCAATCTAAGATTGGACCAGACTGAGGGTTGTGGC-AGTAGGATCAGCAGCAC
770 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCTAGCAGGATCGGCAGCAC
* * ** * ** * * * *
5190785 TCAAAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCATCCGGTCGACTGAGCA
835 GCAGAGGGGGACCCGATCGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGGCTGAGCA
*
5190845 CCTGCACGCTCGTTTCGT-GG--G---T-----T---GA---C-TT---AG-----GCATACAGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGA
*
5190884 GTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCAT
66 GTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATGCTAGGCTCGGGCAT
* * *
5190949 GTGTTGGTGCCACATTTTTCTTCG-CTGGGGCACCATCGTCAGAGCATCGCCAGAGCACCTGACC
131 GTGTTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGTCA-AGCATCGTCGGAGAACCTGACC
* * *
5191013 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTATGCGCACATGATGTGCGATAGGTG
194 GGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
5191078 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
258 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
* * * *
5191143 AAGAGCATTTTAGATTCTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCCGAAATAGGGACACT
323 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACT
* *
5191208 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCA
388 TTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
*
5191273 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAAAATTTTAAAA
453 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAA
* * * *
5191338 AATCCCAAACTGCAAAAAGTTTCAAAAATCGTGAGAAATAGAAAACGAGTTGTCTTGCCATGAAA
518 AATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
5191403 CTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT
583 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
*
5191468 AGAAATGCT-AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
648 AGAAAT-ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
*
5191532 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTTGTCGGTTGGCTTAGGCAT
712 CTCTCTGGCCGACGTAGT----GCCCGCCCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
*
5191597 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGC-AGCAAGATCGGCAGCA
769 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCTAGCAGGATCGGCAGCA
* * * *
5191661 TGCAGAGGGGGAACCGATCGATCCCCGGCTTATGCATCCTGCCCCTCTGGCTGGCTGAGCA
834 CGCAGAGGGGGACCCGATCGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGGCTGAGCA
* *
5191722 CCCACACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGA
* * * * * * *
5191787 GTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACCGCACATGCTGGGCTCGGGGAT
66 GTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATGCTAGGCTCGGGCAT
* * * * *
5191852 GTGTTGGTGACAAAATTTTCTTCGTCGGGGAACCATCGTCGAAGCATCGTCGGAGAACCTGACTG
131 GTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTC-AAGCATCGTCGGAGAACCTGACCG
*
5191917 GCGGCATTGGGGTTCCGACGATCGGGTGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGC
195 GCGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
5191982 TGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTCAAGAACTCACACCCCCTTAA
259 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
* * * *
5192047 AGAACATTTCAGATTTTACCGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTT
324 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTT
5192112 TTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
389 TTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
5192177 AAAAAATACAAGGATCACGTCTACGAAGTTTGGGGCCAAAACTCTGTCCGAAAAAATTTTTAAAA
454 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAA
* * *
5192242 GTCCCGAACCG-AAAAAGTTTCAAAAATCGTGAAAAAGAGGAAACGAGTCGTCTTGCCATGAAAC
519 ATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* **
5192306 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGCATTGGCATGCA
584 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
* * * * *
5192371 GAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTGGCGCATGCTGTCT
649 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
*
5192436 CTCTGGCCGACGTAGTGCCCACCCGCCGCCCGCTCGCCCGCCCGCTCGTTTCGTTGGTTGGCTTA
714 CTCTGGCCGACGTAGT-----------G--C-C-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * *
5192501 GGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGC-ACTAGCAGGATCGA
764 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCTAGCAGGATCGG
* ** *
5192565 CAGCACGCAGAGGGGGGCCCGGCCGATCCCCAGCTTACT-CATCCCGCCCCTCTGGCCGGCTGAG
829 CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTA-TGCATCCCGCCCCTCTGGCCGGCTGAG
5192629 CA
893 CA
* * * *
5192631 GCCGCGCGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTACAGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGA
* * * *
5192696 GTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGTAGCACATGCTAGGCTCGAGCAT
66 GTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATGCTAGGCTCGGGCAT
* * ** * * *
5192761 GCGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTTGGAAAACCTGACCG
131 GTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTC-AAGCATCGTCGGAGAACCTGACCG
** * * * *
5192826 ATGGCATTGGGGTTCTGATGATCGGGGGTGCCGAGGGGTGCGCGCACATGATGTGCGATGGGTGC
195 GCGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * **
5192891 TGGTACTTGGCACTTATATTGGCCCTCTATCCCTCA-CAAACCTCGCGAACTCACACCCCCTTAA
259 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
* *
5192955 AGAGCATTTGAGGTTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
324 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTT
* *
5193020 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
389 TTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
5193085 GAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTCAAAA
454 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAA
* * *
5193150 ATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGATAACGAGTTGTCTTGCCATGAAAC
519 ATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
5193215 TTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACA
584 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
* * * * *
5193280 GAAATATGAAGATGTACCTAAACCCACCTAGCACCCTATTGATCCACGGCTTACACATCCCGTCT
649 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
5193345 CTCTGGCCGACGTAGT----GCCCGCCCGCTTGTTTCGTCGGATGGCTTAGGCATACAGAGTTCA
714 CTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * * *
5193406 TTCCCAGTCTAAGATCAGGCCGGACTGAGGGTTGCAGCTA-TAGGATCAGTAGCACGCAGAGGGG
779 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCTAGCAGGATCGGCAGCACGCAGAGGGG
* * * *
5193470 GACCCGATCGATGCCCGACTTATGCATCCCG-CCCTCCGGCCGGTTGAGCA
844 GACCCGATCGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGGCTGAGCA
*
5193520 CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAG-AT-C-G-
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGA
** *
5193580 G---A---CCAG--T----T----------CAAGGGTTGTGGCAGCACATGCTAGGCTCAGGCAT
66 GTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATGCTAGGCTCGGGCAT
* *
5193623 GTGTTGGTGCCGCATTTTTCTTCGTCAGGG---CA----C---CATCGTCGGAGAACCTGACC-G
131 GTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCAAGCATCGTCGGAGAACCTGACCGG
* *
5193677 CTGGCATTGGGGTTCCGACGATAGGGGGGCCGGGGGGTGTGCGCACATGAAGTGCGATGGGTGCT
196 C-GGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
5193742 GGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
260 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
* * * * *
5193807 GAGCATTTGAGATTTTATAAGTTTGCTG-CAGTAGCCATTAAAGTGTTTGAAATGGGGGCACTTT
325 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTT
* * * *
5193871 TGTCAAATGGTCACAAAATCTTGTACAA-TTCGCGTTTTTAGCTGACTTTTTTTTTGCATGCCAA
390 TTTCAAATGGTCACAAAATCTTGTA-AACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* ** * * *
5193935 AAAAAATAAAAGGATCATATCTACCAAGTTTGGGGCAAAAAATCCTTT-CAAAAAAATTTTAAAA
454 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCCGAAAAAATTTTAAAA
* ** * *
5193999 AATCCTGAATGGCAAAAAGTTTCAAAAATCATGAAAAATAG-AAACGGAGCCGTCTTGCCATGAA
518 AATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC-GAGTCGTCTTGCCATGAA
* * **
5194063 ACTTCATGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
582 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
* **
5194128 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCAC
647 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* *
5194193 CTTTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTT
712 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * ** * * * * *
5194258 TATTCACAGTCTAAGATTGGATCAGACCGAGGGTTGTGGC-AGCACGATCGGTAGCAC-AAGAGG
777 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCTAGCAGGATCGGCAGCACGCAGAGG
5194321 GGGACCCG
842 GGGACCCG
5194329 TTCAATCCTT
Statistics
Matches: 6178, Mismatches: 723, Indels: 375
0.85 0.10 0.05
Matches are distributed among these distances:
849 3 0.00
850 395 0.06
851 98 0.02
853 14 0.00
854 81 0.01
855 1 0.00
859 2 0.00
862 57 0.01
872 1 0.00
873 5 0.00
874 2 0.00
875 89 0.01
876 120 0.02
877 747 0.12
878 41 0.01
879 32 0.01
880 13 0.00
881 35 0.01
882 13 0.00
883 20 0.00
884 17 0.00
885 54 0.01
886 7 0.00
887 7 0.00
888 37 0.01
889 178 0.03
890 180 0.03
891 105 0.02
892 35 0.01
893 23 0.00
894 63 0.01
895 307 0.05
896 119 0.02
897 109 0.02
898 24 0.00
899 205 0.03
900 282 0.05
901 472 0.08
902 397 0.06
903 544 0.09
904 416 0.07
905 23 0.00
908 220 0.04
909 576 0.09
910 1 0.00
911 1 0.00
912 1 0.00
913 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGA
GTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATGCTAGGCTCGGGCAT
GTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCAAGCATCGTCGGAGAACCTGACCGG
CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAAT
CCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCTAGCAGGATCGGCAGCACGCAGAGGGGGA
CCCGATCGATCCCCGGCTTATGCATCCCGCCCCTCTGGCCGGCTGAGCA
Found at i:5195185 original size:26 final size:26
Alignment explanation
Indices: 5195149--5195201 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5195139 GTTGACTCAG
* *
5195149 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5195175 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5195201 G
1 G
5195202 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5197446 original size:901 final size:897
Alignment explanation
Indices: 5195636--5199640 Score: 5397
Period size: 900 Copynumber: 4.5 Consensus size: 897
5195626 AAAAAATTTT
*
5195636 AAAATCGTAAAAAATAGAAAAC-AAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
1 AAAATCGTGAAAAATAGAAAACGAA-TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * *
5195700 CTTTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCATAAA
65 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* *
5195765 CCCACCTAGCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGC
130 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* *
5195830 CCGCCCGCCTTCCCGTTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
195 CCGCCCG----CCCGTTCGTTTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* ** * *
5195895 TC-GAATCACACCGAGGGTTGTGGCAGC---A----T-GCA-G--AAGGGGGCCCGACTGATCCC
255 TCAG-ACCGGACCGAGGGTTGTGGCAGCAGGATTGGTAGCACGCAAAGGGGGACCGACCGATCCC
* * *
5195948 TGGCTTGCGCATCCCGCCCCTCTGGCC-AGCTGAGCACCCGCACGCTCGTTTTGTGAGTTGACTT
319 CGGCTTGCGCATCCCGCCCCTCTGGCCGA-CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTT
* *
5196012 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC-AGCTTAATATCG-GACC
383 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATC-TAAGATCGAGACC
* * *
5196075 GGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGTCATGTGTTGGTGCCGTATTTTTCTTCACC
447 AGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACC
* **
5196140 GAGGCACCATCGCCGGAGCATCGCCGAAGAACCTGACCAGCGGCATTGAAGTT-CGACGATCGGG
512 GGGGCACCATCGCCGGAGCATCGCCGAAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGG
* * *
5196204 TGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCC
577 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
5196269 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AAGAGCGTTTGAGATTTTACAGGTTTG
642 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * * * *
5196333 CTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGCTCATAAAATCTTGTA
707 CTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
5196398 CACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAGA-AAAAAGACAAGGATCATGTCTACC
772 CACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCA-ACAAAAATACAAGGATCACGTCTACC
* * * *
5196462 AAGTTTGGGGCGAAAACTCCTTCCGAAAAGATTTAAAAAAATCCTGAACCACAAAAAGTTTCA
835 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCA
* *
5196525 AAAATCATGAAAAATAGAAAACGAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACC
1 AAAATCGTGAAAAATAGAAAACGAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
5196590 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCAGAGAA-ATGAAGATGTGCCTAAA
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA-AATATGAAGATGTGCCTAAA
* * *
5196654 CCCACCTACCACACTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGC
130 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
*
5196719 CCGCCCGCCCGTTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
195 CCGCCCGCCCGTTCGTTTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * * *
5196784 ACCGGACTGAGGGTTATAGCAGCAGGATCGGTAGCACGCAGAGGGGGAGCCGGCCGATCCCCAGC
259 ACCGGACCGAGGGTTGTGGCAGCAGGATTGGTAGCACGCAAAGGGGGA-CCGACCGATCCCCGGC
* * * * * *
5196849 TTACGCATCCCGCCCTTCTGGACGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGATTTAGGCA
323 TTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
** * * **
5196914 TATAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAATCTCAGATCGA-ACCAGACTG
388 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAGACCAGACCA
* * * * * ***
5196978 AGGGTTGCGGTAGCACTTGCTGGGCTTGGGAATGTGTTGGTGCCGTATTTTTCTTTGTCGGGGCA
453 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCA
* * * *
5197043 CCATCGTCGGAGCATCGTCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACAATCGGGGGGGCC
518 CCATCGCCGGAGCATCGCCGAAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
** * ** * *
5197108 GGGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTTTTACTTGTCCCTTATATCAGCTCTCGT-
583 -GGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCCTA
*
5197172 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTG
645 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
5197237 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
710 CCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
5197302 TTCGAGTTTTTGGCCT-AATTGTTTTGTGCATGCCAACAAAAATACAGGGATCATGTCTACCAAG
775 TTCGAGTTTTTAG-CTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * *
5197366 TTTGGGGCCGAAACTCCTTTCGAAAAAATTTTAAGAAATCCCGAACCACAAAAAGTTTCA
838 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCA
*
5197426 AAAATCATGAAAAATAGAAAACGAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
5197491 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTACCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * *
5197556 CCACCTACCACCCTATTGATCCACGGCTTGCGCATCCTGTCTCTC-GGCCGACGTAGTGCCCGCC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
*
5197620 CGCCCG--C-TT-GTTTCGACGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
196 CGCCCGCCCGTTCGTTTCGTCG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * *
5197681 CCAGACCGTGGGTTGAGGCAGCAAGATTGGAAGCACACAAAGGGGGACTCGATCGATCCCCGGCT
260 CCGGACCGAGGGTTGTGGCAGCAGGATTGGTAGCACGCAAAGGGGGAC-CGACCGATCCCCGGCT
* * *
5197746 TGCGCATCCCACCCCCCTGGCCGACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
324 TGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* *
5197811 ACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACAATCTAAGCATACAGAGTTCATTC
389 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAG-AT-C-GAG---A--C
* * *
5197876 ACAATCTAACCAAGGGTTGCGGCAGCACTTGCTGGGCTCGGCCATGTGTTGGTGCCGCATTTTTC
446 -C-A---GACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTC
** * * * * *
5197941 TTCGTCGGGGCACTATCGTCGGAGGATCGCCGGAGAACCTGACC-GACGGCATTGGGGTTCCGAT
506 TTCACCGGGGCACCATCGCCGGAGCATCGCCGAAGAACCTGACCAG-CGGCATTGGGGTTCCGAC
* * * *
5198005 GATCGGGGTGGCCGGGGGG-GTGCGCAAATGATGTGTGATGGGTGCTGGTGCTTGGCCCTTATAT
570 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
5198069 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTAC
635 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
5198134 AGGTTTGCTGCCAGTAGCCATTAAAGTGTTTAAAATGGGGACACTTTTTTCAAATGGTCACAAAA
700 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAA
*
5198199 TGTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
765 TCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * * **
5198264 TCTACCAAGTTTGGGGCCAAAACTCTTTCC-AAAAAAATTTAAAAAATTCCCAAACTGCAAAAAG
829 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA-TCCCGAACCACAAAAAG
5198328 TTTCA
893 TTTCA
* * ** * * *
5198333 AAAATCGTGAAAAATAGAAAATGAGTTATCTTGCCATGAAACTTCACGTGAGGGCTTAAGAGAAC
1 AAAATCGTGAAAAATAGAAAACGAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
5198398 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAGAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* *
5198463 CAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGACCGGCGTAGTGCCCGCC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* ** *
5198528 CGCCCGCCCGCTCGTTTCGTCAGTTGGCTGGGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
196 CGCCCGCCCGTTCGTTTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * *
5198593 CCGGATCGAGGGTTGTGGTAGCAGGATTGGTAGCACACAGAGGGGGACCCGACCGATCCTCGGCT
260 CCGGACCGAGGGTTGTGGCAGCAGGATTGGTAGCACGCAAAGGGGGA-CCGACCGATCCCCGGCT
* * *
5198658 TGCGCATCCCGCCTCTCTGGCCGACTGAGCACCCGTACGCTCGTTTCGTGGGTTGAATTAGGCAT
324 TGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * *
5198723 ACGGAGTTCATTCCCAGGCTAAGCATACGGAGTTCATTCCCAGA-CTAAGAT-AAGACCGGACCG
389 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA-ATCTAAGATCGAGACCAGACCA
* *** * * * *
5198786 AGGGTTGCGGTAGCACATGCTGGGCTTAAGTATGTGTTGGTGCCGCATTTTTTTTCACCAGGACA
453 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCA
* * * * * * * * *
5198851 GCATCGCCAGAGCATTGCCAAAGAACTTGACCGGCGGCATTGGGGTTCTGGCGATTGGGGGGGCC
518 CCATCGCCGGAGCATCGCCGAAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
* * * * *
5198916 GGGGGGGTGTGC-CTACATTATGTGTGATGGGTGCTGATAGTTGGCCCTTATATTGGCCCTCTAT
583 -GGGGGGTGTGCGC-ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
5198980 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGC
646 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
5199045 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTAAAATGGTCACAAAATCTTGTACACT
711 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
5199110 TCGAGTTTTTAGCTGAAGTTTTTTATGCATGCCAACAAAATTACAAGGATCACGTCTACCAAGTT
776 TCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * **
5199175 TGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTG
840 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCA
* * *
5199233 AAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
5199298 ATTGTATGAGTTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
** *
5199363 CCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CCGTCTCTCTGGCCGGTATAGTGCTCGCC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * *
5199427 CGTCCG--C--TCGTTTCGTCGATTGGCTAAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
196 CGCCCGCCCGTTCGTTTCGTCG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * *
5199488 CCGGACCGAGGGTTGTGGTAGCGGGATTGGCAGCACGTAAAGAGGGACTCGGCCGATCCCCGGCT
260 CCGGACCGAGGGTTGTGGCAGCAGGATTGGTAGCACGCAAAGGGGGAC-CGACCGATCCCCGGCT
* * * *
5199553 TGCGCATCCTGCCCCTCTTGCCGACTGAGCACCCGCATGCTCGTTTCTTGGGTTGACTTAGGCAT
324 TGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
5199618 ACGGAGTTCATTCCCAGTCTAAG
389 ACGGAGTTCATTCCCAGTCTAAG
5199641 TTCAGACCAG
Statistics
Matches: 2760, Mismatches: 292, Indels: 122
0.87 0.09 0.04
Matches are distributed among these distances:
885 71 0.03
886 1 0.00
888 1 0.00
889 183 0.07
890 4 0.00
892 1 0.00
893 3 0.00
894 3 0.00
895 184 0.07
896 206 0.07
897 222 0.08
898 124 0.04
899 46 0.02
900 529 0.19
901 376 0.14
902 3 0.00
903 2 0.00
905 2 0.00
906 20 0.01
907 416 0.15
908 31 0.01
909 5 0.00
910 119 0.04
911 3 0.00
912 202 0.07
913 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
AAAATCGTGAAAAATAGAAAACGAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
CGCCCGCCCGTTCGTTTCGTCGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CGGACCGAGGGTTGTGGCAGCAGGATTGGTAGCACGCAAAGGGGGACCGACCGATCCCCGGCTTG
CGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAGACCAGACCAAGG
GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCA
TCGCCGGAGCATCGCCGAAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
TTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCA
Found at i:5197843 original size:26 final size:26
Alignment explanation
Indices: 5197807--5197884 Score: 129
Period size: 26 Copynumber: 3.0 Consensus size: 26
5197797 GTTGACTTAG
* *
5197807 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCACAATCTAA
*
5197833 GCATACGGAGTTCATTCACAATCTAA
1 GCATACAGAGTTCATTCACAATCTAA
5197859 GCATACAGAGTTCATTCACAATCTAA
1 GCATACAGAGTTCATTCACAATCTAA
5197885 CCAAGGGTTG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAATCTAA
Found at i:5198748 original size:26 final size:26
Alignment explanation
Indices: 5198719--5198771 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5198709 GTTGAATTAG
*
5198719 GCATACGGAGTTCATTCCCAGGCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
5198745 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACGGAGTTCATTCCCAGACTAA
5198771 G
1 G
5198772 ATAAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:5199741 original size:159 final size:159
Alignment explanation
Indices: 5199453--5199758 Score: 380
Period size: 159 Copynumber: 1.9 Consensus size: 159
5199443 CGATTGGCTA
* * * * ***
5199453 AGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCGGGATTGG
1 AGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAA
* * * * *
5199518 CAGCACGTAAAGAGGGACTCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTTGCCGACTGAGC
66 CAGCACGTAAAGAGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCACCTCTGGCCGACTGAGC
*
5199583 ACCCGCATGCTCGTTTCTTGGGTTGACTT
131 ACCCGCACGCTCGTTTCTTGGGTTGACTT
* * *
5199612 AGGCATACGGAGTTCATTCCCAGTCTAAGTTCAGACCAGACCGAGTGG-TGCGGCAGCATGATCA
1 AGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAG-GGTTGCGGCAGCAGGATCA
* * * * * **
5199676 ACAGCACGTAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCACTTCTGGTCGGTTGAG
65 ACAGCACGTAAAGAGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCACCTCTGGCCGACTGAG
*
5199741 CTCCCGCACGCTCGTTTC
130 CACCCGCACGCTCGTTTC
5199759 GTGTCTGAAA
Statistics
Matches: 122, Mismatches: 24, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
159 120 0.98
160 2 0.02
ACGTcount: A:0.19, C:0.30, G:0.29, T:0.22
Consensus pattern (159 bp):
AGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAA
CAGCACGTAAAGAGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCACCTCTGGCCGACTGAGC
ACCCGCACGCTCGTTTCTTGGGTTGACTT
Found at i:5200952 original size:26 final size:26
Alignment explanation
Indices: 5200915--5200967 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
5200905 GTTGACTTAG
5200915 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5200941 GCATAC-AGAGTTCATTCCTAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
5200967 G
1 G
5200968 ATCGGAGCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5203641 original size:26 final size:26
Alignment explanation
Indices: 5203605--5203657 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5203595 GTTGACTTAG
5203605 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5203631 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5203657 G
1 G
5203658 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5204463 original size:902 final size:897
Alignment explanation
Indices: 5201817--5207509 Score: 4531
Period size: 902 Copynumber: 6.3 Consensus size: 897
5201807 GTTGACTTAG
* * * ** *
5201817 GCATACGAAGTTCATTCCCAGTCCAAGATTGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *** *
5201882 CTCAGCCATGTGTTGGTGCTGCATTTTTC-TC-TGCCAAGGTACCATCACCGGGGGCATCACCGG
66 CTCAG-CATGTGTTGGTGCCGCATTTTTCTTCAT--CGAGGCACCATC-GTTGGAGCATCACCGG
* ** * * *
5201945 AGAACCTGACCGGTGGCATTCTGGTTCC-AGTGATCGGGAGGGCCGGGGGCGGTGTGCGCACATG
127 AGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGTCGGGGG-GGTGTGCGCACATG
* *
5202009 ATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
190 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
5202074 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTTT
255 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
5202139 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTTGCTGAATTT
320 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
5202204 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGGTTGGGGCCAAAAATCCTTTCG
385 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATT-G
* * * * * *
5202269 AAAAAAGTTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAAAGGGT
449 AAAAAATTTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAGTAGAAAACGAGT
* * *
5202334 CGTCTTGCCATGAAACTTTATGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAA
514 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
5202399 ATGGCATTGACA-CTTAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCAACG
579 ATGGCATTGGCAGC-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
5202463 ACTTGCGCATCCTGTCTCTTTGGCGGGCGTAGTGCC-CCCGCCCGCCCT-CC-CGTTTCGTCGGT
643 ACTTGCGCATCCCGTCTCTCTGGC-GGCGTAGTGCCGCCCGCCTGCCCTCCCTCGTTTTGTCGGT
** *
5202525 TGGCTTAGGGCAATACGGAGTTCATTCTGAATCTAAGGCAATAGATTCGAGACCGATGGGTCTGC
707 TGGCTTA-GGC-ATACGGAGTTCATTCCCAGTCTAA-G--ATAGA-TCG-GACC-ATGGGT-TG-
** * *
5202590 AACAGTAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCTCGGCTTGTGCATCCCGCCCCT
762 AGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCT
* * *
5202655 CTGGCCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTGGGCATACGGAGTTCATTCCCA
827 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
*
5202720 CTCTAA
892 ATCTAA
* * * * *
5202726 GCAAACGGAGTTCATTCCTAGTCAAAGATCAGACTGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
5202791 CTCAGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCAGCATC-ATCGAGGCATCGCCGGAG
66 CTCA-GCATGTGTTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGTTGGA-GCATCACCGGAG
* * * **
5202855 AATC-GAACCGGTGGCATTGGGGTTCCGACCATCGGGGGGAACGAGGGGGGTGTGCGCACATGAT
129 AACCTG-ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCG-GGGGGGTGTGCGCACATGAT
* * *
5202919 GTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGTGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
5202984 CACA-CCCCTCGAAAGAGCATCTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
257 CACACCCCCT-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
5203048 AAAGGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * **
5203113 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAAATCCATCCCA
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCAT-TGA
5203178 AAAAATTTTT-AAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAGTAGAAAACGAGTC
450 AAAAATTTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAGTAGAAAACGAGTC
*
5203242 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATAAAAA
515 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
5203307 TGGCATTGGCA-CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA
580 TGGCATTGGCAGC-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA
* *
5203371 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCAGCCCGCCTGCCCACCCACTCGTTTTGTCT
644 CTTGCGCATCCCGTCTCTCTGG-CGGCGTAGTGCC-GCCCGCCTGCCC-TCC-CTCGTTTTGTCG
* * * *
5203436 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGGGATCAGACTGA-GGGTTTCAGTAG
705 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGATCGGAC-CATGGG-TTGAGTAG
* * * * * *
5203500 CAGGGTCAGTAGCACGCAGAGGGGGACCCGGTCGATCCTCGGCTTACGCATCCCGCCCCTCTGGC
767 CAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGC
* * *
5203565 CGACTGAGCGCCCGCACGCTCGTTTCCTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
832 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTA
5203630 A
897 A
* *
5203631 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
5203696 CTCGAGCATGTGCTGGTGTCGCATTTTTTTTCATCGAGGCACCATCGTTGGAGCATCACCGGAGA
66 CTC-AGCATGTGTTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGTTGGAGCATCACCGGAGA
* * * * *
5203761 ACCTGACCAGCGGCGTTAGTGTTCCGATGATCGGGGGGGTC-GGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTG
* * * *
5203825 TGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCGTCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
5203890 ACCCCCTTAAAGAGAATTTGAGATTTTATAGTTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5203955 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTCGAGTATTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
5204020 TGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCC-TTGAGAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATTGA-AAAA
* * *
5204084 ATTTTTAAAAAATCCCGAACCGTAAAAAGTTAC-GAAATCGTGAAAAGTAGAAAACGAGTCGTCT
454 ATTTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAGTAGAAAACGAGTCGTCT
5204148 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
5204213 ATTGGCATGCT-CAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
584 ATTGGCA-GCTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* * *
5204277 TGCATCCCGTCTCTCTGGTCGGCGTAGTGCCTGCCAGCCTGCCCGTCCGCTCATTTTGTCGGTTG
648 CGCATCCCGTCTCTCTGG-CGGCGTAGTGCC-GCCCGCCTGCCC-TCC-CTCGTTTTGTCGGTTG
* * * * *
5204342 GCTCAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCATGGGTTGAGGTAGCAAGA
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGATCGGACCATGGGTTGA-GTAGCAGGA
* * * * * * * * * *
5204407 TCGGCAGCACGTAGAGAGGGACTCTACCAATCCCCAGCTTGCACATCTCACCCCTCTGGCCGGCT
772 TCGGCAGCACGTAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
5204472 GAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTACGCATACGGAGTTCATTCCCAATCTAA
837 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* *
5204533 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCT-GACCGAGGGTTGCAGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
5204597 GCTTGAGCATGTGTTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTTGGAGCATCACCGGAG
65 GC-TCAGCATGTGTTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGTTGGAGCATCACCGGAG
* * * *
5204662 AAGCTGACCGACGGCGTTGGGGTTCCGACGATCGGGGGGGGTCGGGGGGGTATGCGCACATGATG
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGGTCGGGGGGGTGTGCGCACATGATG
* * * * ** * * * *
5204727 TGTGATGGGTACGATGGGTGC-TGGTACCAGATCGAGGGTTGCGGCAGCAC-AT-GCTGGGCTAG
193 TGCGATGGGT--GCT-GGTACTTGG-CCCTTAT--A---TT--GGC-CCCCTATCCCT---C-AT
** ** * *** * *** * ** **
5204789 GGAATGTGCTG-GTGA-TGCA-TTTCTCTTCGCCGGGGCCCCATCGCCGGAGCATCGT-C--G-T
242 CAAACCT-C-GAG-AACT-CACACCCCCTT--AAAGAG---CAT---TTGAG-ATTTTACAGGTT
* ** * *** * ** ** *********
5204847 AGAACCTGACC-GGCGGCATTGGGGT-TGCGGCGATCGGGGGGACTGGGGGGGTGTGCG-CACAA
294 TG---CTG-CCAGTAGCCATTAAAGTGT-CTGAAAT-GGGGACACTTTTTTCAAATG-GTCACAA
* * * *** * ** * * * ** ****
5204909 GATGTGTGAAGGGTTCTAGTACTTGGCTG-A-TATATTG-GC-CCCCTAACCCTCAT-CAA--A-
352 AATCT-TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGAT
** * ****** * * * ****
5204966 C-C-TC-AAGAACTCACACCCCCTTAAAGA-GCATTTG---AGA-TTTTACAGGTTTGCTGCCAG
415 CACGTCTACCAAGT-TTGGGGCC--AAAAATCCA-TTGAAAAAATTTTTA-AAAAAT-C--CC-G
* * * ** * * *** **** * *
5205023 TAGCCAT-TAAAGTGTCTGAAATGGGGACATTTTTTTCAA--A-TGGTC---ACA--AAATCTTG
471 -AACCATAAAAAGTTTCAAAAATCGTGA-AAAGTAGAAAACGAGTCGTCTTGCCATGAAA-C-T-
* ** * * * * * * * *
5205079 TACACTTCG-AGTTTTTAGTTGA--ATTCT-T---TTGTGCATGCCAACAAAAAT-ACA-AGGAT
531 T-CACGT-GAAGGCTTAAG-GGACCATTGTATGAATT-TACAAGCC-ATAAAAATGGCATTGG--
** * * * * ** *** *** *
5205135 CATGTCTAAGAGGTTTG--G--G-GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCA-AAC
589 CA-G-CT-AGAAATATGAAGATGTGCCTAAAC-CC-ACC--TACCACCCT-ATCGATC-CACGAC
* **** * ***** *** * **** ** * * * *** *
5205194 ---CGTAAAAAGTTTCAAAAATCGTGAAAAATAG-AAAACGAGTCGTCTTGCCAT-GAAACTGCA
645 TTGCGCATCCCGTCTC-TCTGGCG-GCGTAGT-GCCGCCCGCCT-GCCCT-CCCTCG-TTTTG-T
** * * ** * * * **
5205254 CGTGAAGGCTTAAGGGACCAT-TGTA-TGAATTTACAAGCCATAA-A-A-AT-GG--CATTGGCA
703 CG-GTTGGCTT-A-GG--CATACGGAGTTCA-TTCCCAGTC-TAAGATAGATCGGACCA-TGGGT
* * ** ****** * *
5205311 TGCAGAAATAAG-AAGAT-GTGCCTA-AACCCA-CCTACCACCCTATCGATCCACGGCTTGCGCA
760 TG-AG---T-AGCAGGATCG-G-C-AGCACGTAGAGGGGGACCCGATCGATCCTCGGCTTGCGCA
* * * * * ** *** ** * * * **
5205372 TCCCGTCTCTCTTGCCGGC-GTAGTGCCCGCTCGCTCG-CCCGCCCGTCCAC-T-CG-TTTCGTC
817 TCCCGCCCCTCTGGCCGGCTG-AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* ** *
5205432 G--GA-TGGC--T-TAG
881 GTTCATTCCCAATCTAA
* * * * * * *
5205443 GCAT-CTAGAGTTCCTTCCCAGTCTAAGATCAGA-TCAGACCGAGGGTTGCAGCAGCATATGTTG
1 GCATAC-GGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTG
* * * * ** * *
5205506 GGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCTGA
64 GGCTCA-GCATGTGTTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGTTGGAGCATCACCGGA
* * * * *
5205571 GAACATGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGAGGTGTACACACATGAT
128 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGG-GGTGTGCGCACATGAT
* * *
5205636 GTGCGATGGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCGCATCAAACCTGGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
5205701 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTAA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
5205766 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * *
5205831 TTGTGCAAGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGAGCCAAAACTCCTTTTGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCC-ATTGAA
** ** * * * * *
5205896 AAAA-TTTTAAAAAATCCCGAACCGCAAAGGGTTTCGAAAATCATAAAAAATAGAAAATGAGTCG
451 AAAATTTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAGTAGAAAACGAGTCG
* *
5205960 TCTTGCCTTGCAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
5206025 GGCATTGGCA-CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
581 GGCATTGGCAGC-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGAC
* * * * ** *
5206089 TTGCGCATCCCGTCTTTCAGGCCGACGTAGT---GCCCGCC--CACC-CACTCGTTCCGTCAGTT
645 TTGCGCATCCCGTCTCTCTGG-CGGCGTAGTGCCGCCCGCCTGC-CCTCCCTCGTTTTGTCGGTT
* * * * * * *
5206148 GGCTTAGGCATGCGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGA-GGGTTGCGGCAGCAG
708 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGATCGGAC-CATGGGTTG-AGTAGCAG
** * * * * *
5206212 GATCAACAGCACGTAGAGAGGGACCCGGTCGATCCTCAGCTTGTGCATCCCACCCCTCTGGCCGG
770 GATCGGCAGCACGTAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * ** * * *
5206277 GTCAGCGCCTACACGCTCGTTTCGTTGGTTTACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* * * ** * *
5206340 GCATACAGAGTTCATTCACAGTCTAAGATCAGACCAGAACGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * ***
5206405 CAT-AGGCATGTGCTGGTGTCACATTTTTCTCCGTCGGGGCACCATCGCCAGAGCATCACCGGAG
66 C-TCA-GCATGTGTTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGTTGGAGCATCACCGGAG
* * * *
5206469 AACCTAACCGGCGACATTGGGGTTCCGACGAT--AGGGGGCCGGGGGGGTGTGCGCACATGATGT
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGT
5206532 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
5206597 CACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
5206662 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTCTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
5206727 GTGCATGCCAACAAAAATACAAGGATCATGTCTA--AGAGTTTTGGGGCCAAAACTCC-TTCCGA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCA-AG-TTTGGGGCCAAAAATCCATT--GA
* * * *
5206789 AAAAA-TTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
450 AAAAATTTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAGTAGAAAACGAGTC
*
5206853 GTCTTGCCATGAAACTGCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
515 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
5206918 TGGCATTGGCATGC-CGAAATATGATGATGTGCCTAAACCGACCTACCACCCTATCGATCCATGA
580 TGGCATTGGCA-GCTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA
* * * * *
5206982 CGTGCGCATCCCTTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTTGTCG
644 CTTGCGCATCCCGTCTCTCTGG-CGGCGTAGTG-CCGCCCGCCTGCCCTCC--CTCGTTTTGTCG
* * * * *
5207047 GTTGGCTTAGGCATATGGAGTTCATTCCCAATCTAAGTTTAGA-CTGGACCATGGGTTGGGGCAG
705 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATAGATC-GGACCATGGGTT-GAGTAG
* * * * * *
5207111 CAGGATCGGCAGCACGCAGAGGGGGACCCGATTGATCCCCGGCTTGGGCATCCTGCCCCTCTGGT
767 CAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGC
* * *
5207176 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACATAGGCATATGGAGTTCATTCCCAGTCTA
832 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTA
5207241 A
897 A
* ** * * *
5207242 GCATACGGAGCTCATTCCCAGTCTAAGATCAAACTGGATCAAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * **
5207307 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCG-CGCACCATCGTCGGAGCATCGTCGGAGA
66 CTC-AGCATGTGTTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGTTGGAGCATCACCGGAGA
* * * * * * *
5207371 ACTTGACCTGTGGCATTGAGGTTCC-AGCGATC--GGAGGTACAGGGGGGGTGTGCACACAAGAT
130 ACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGT-C-GGGGGGGTGTGCGCACATGAT
* * * *
5207433 GTTCGATGGCTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCAAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
5207498 CACACCCCCTTA
257 CACACCCCCTTA
5207510 CATGCTGGGC
Statistics
Matches: 3745, Mismatches: 794, Indels: 496
0.74 0.16 0.10
Matches are distributed among these distances:
884 6 0.00
885 10 0.00
886 27 0.01
887 75 0.02
888 36 0.01
889 10 0.00
890 17 0.00
891 17 0.00
892 17 0.00
893 10 0.00
894 470 0.13
895 43 0.01
896 23 0.01
897 157 0.04
898 30 0.01
899 17 0.00
900 19 0.01
901 59 0.02
902 768 0.21
903 377 0.10
904 36 0.01
905 257 0.07
906 14 0.00
907 228 0.06
908 310 0.08
909 122 0.03
910 163 0.04
911 24 0.01
912 6 0.00
913 21 0.01
914 6 0.00
915 13 0.00
916 21 0.01
917 44 0.01
918 34 0.01
919 32 0.01
920 79 0.02
921 24 0.01
922 22 0.01
923 22 0.01
924 8 0.00
925 8 0.00
926 23 0.01
927 23 0.01
928 17 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCAGCATGTGTTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGTTGGAGCATCACCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATTGAAAAAAT
TTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAGTAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCAGCTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
ATCCCGTCTCTCTGGCGGCGTAGTGCCGCCCGCCTGCCCTCCCTCGTTTTGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATAGATCGGACCATGGGTTGAGTAGCAGGATCGGCAGCA
CGTAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
Found at i:5204543 original size:26 final size:26
Alignment explanation
Indices: 5204507--5204559 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5204497 GTTGACTTAC
5204507 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
5204533 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5204559 G
1 G
5204560 ATCGGACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5204887 original size:187 final size:186
Alignment explanation
Indices: 5204572--5204922 Score: 441
Period size: 187 Copynumber: 1.9 Consensus size: 186
5204562 CGGACCTGAC
* * * * * * *
5204572 CGAGGGTTGCAGCAGCACATGCTAGGCTTGAGCATGTGTTGGTGCCGTATTTTTCTTCATCGGGG
1 CGAGGGTTGCAGCAGCACATGCTAGGCTAGAGAATGTGCTGGTGACGCATTTCTCTTCACCGGGG
** * * *
5204637 CACCATCGTTGGAGCATCACCGGAGAAGCTGACCGACGGCGTTGGGGTTCCGACGATCGGGGGGG
66 CACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGA
* * *
5204702 GTCGGGGGGGTATGCGCACATGATGTGTGATGGGTACGATGGGTGCTGGTACCAGAT
131 CT-GGGGGGGTATGCGCACAAGATGTGTGAAGGGTACGATGGGTGCTGGTACCAGAT
* * * * *
5204759 CGAGGGTTGCGGCAGCACATGCTGGGCTAGGGAATGTGCTGGTGATGCATTTCTCTTCGCCGGGG
1 CGAGGGTTGCAGCAGCACATGCTAGGCTAGAGAATGTGCTGGTGACGCATTTCTCTTCACCGGGG
* ** * * * *
5204824 CCCCATCGCCGGAGCATCGTCGTAGAACCTGACCGGCGGCATTGGGGTTGCGGCGATCGGGGGGA
66 CACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGA
*
5204889 CTGGGGGGGTGTGCGCACAAGATGTGTGAAGGGT
131 CTGGGGGGGTATGCGCACAAGATGTGTGAAGGGT
5204923 TCTAGTACTT
Statistics
Matches: 136, Mismatches: 28, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
186 29 0.21
187 107 0.79
ACGTcount: A:0.16, C:0.21, G:0.40, T:0.22
Consensus pattern (186 bp):
CGAGGGTTGCAGCAGCACATGCTAGGCTAGAGAATGTGCTGGTGACGCATTTCTCTTCACCGGGG
CACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGA
CTGGGGGGGTATGCGCACAAGATGTGTGAAGGGTACGATGGGTGCTGGTACCAGAT
Found at i:5206350 original size:26 final size:26
Alignment explanation
Indices: 5206314--5206366 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5206304 GTTTACTTAG
* *
5206314 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
5206340 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
5206366 G
1 G
5206367 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:5207256 original size:26 final size:26
Alignment explanation
Indices: 5207216--5207268 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5207206 GTTGACATAG
* *
5207216 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
5207242 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
5207268 G
1 G
5207269 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:5207636 original size:212 final size:212
Alignment explanation
Indices: 5207297--5207721 Score: 850
Period size: 212 Copynumber: 2.0 Consensus size: 212
5207287 TTGCGGTAGC
5207297 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGCGCACCATCGTCGGAGCAT
1 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGCGCACCATCGTCGGAGCAT
5207362 CGTCGGAGAACTTGACCTGTGGCATTGAGGTTCCAGCGATCGGAGGTACAGGGGGGGTGTGCACA
66 CGTCGGAGAACTTGACCTGTGGCATTGAGGTTCCAGCGATCGGAGGTACAGGGGGGGTGTGCACA
5207427 CAAGATGTTCGATGGCTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCA
131 CAAGATGTTCGATGGCTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCA
5207492 AGAACTCACACCCCCTT
196 AGAACTCACACCCCCTT
5207509 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGCGCACCATCGTCGGAGCAT
1 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGCGCACCATCGTCGGAGCAT
5207574 CGTCGGAGAACTTGACCTGTGGCATTGAGGTTCCAGCGATCGGAGGTACAGGGGGGGTGTGCACA
66 CGTCGGAGAACTTGACCTGTGGCATTGAGGTTCCAGCGATCGGAGGTACAGGGGGGGTGTGCACA
5207639 CAAGATGTTCGATGGCTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCA
131 CAAGATGTTCGATGGCTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCA
5207704 AGAACTCACACCCCCTT
196 AGAACTCACACCCCCTT
5207721 A
1 A
5207722 AAGAGCTTTT
Statistics
Matches: 213, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
212 213 1.00
ACGTcount: A:0.20, C:0.29, G:0.27, T:0.24
Consensus pattern (212 bp):
ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGCGCACCATCGTCGGAGCAT
CGTCGGAGAACTTGACCTGTGGCATTGAGGTTCCAGCGATCGGAGGTACAGGGGGGGTGTGCACA
CAAGATGTTCGATGGCTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCA
AGAACTCACACCCCCTT
Found at i:5208385 original size:26 final size:26
Alignment explanation
Indices: 5208335--5208387 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5208325 GTTGACTTAG
* **
5208335 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATAAGGAGTTCATTCCCAATCTAA
5208361 GCATAAGGAGTTCATTCCCAATCTAA
1 GCATAAGGAGTTCATTCCCAATCTAA
5208387 G
1 G
5208388 ATTAGAAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAATCTAA
Found at i:5209257 original size:26 final size:26
Alignment explanation
Indices: 5209221--5209270 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
5209211 GTTGACTTAG
5209221 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5209247 GCATATGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
5209271 TAGATCGAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5211429 original size:26 final size:26
Alignment explanation
Indices: 5211379--5211431 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
5211369 GTTGACTTAG
*
5211379 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAATCTAA
*
5211405 GCATATGGAGTTCATTCGC-AATCTAA
1 GCATACGGAGTTCATTC-CTAATCTAA
5211431 G
1 G
5211432 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAATCTAA
Found at i:5213198 original size:26 final size:26
Alignment explanation
Indices: 5213169--5213221 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5213159 GTTAACTTAG
5213169 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5213195 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5213221 G
1 G
5213222 ATCGGACCGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5213598 original size:903 final size:902
Alignment explanation
Indices: 5210498--5216610 Score: 7882
Period size: 907 Copynumber: 6.8 Consensus size: 902
5210488 GTTGACTTAG
* * *
5210498 GCATACGGAGTTCATTCCCAGTTTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTGC-GCAGCACATGCTGGG
* * *
5210563 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGCCAGAGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* ** * * * ** * *
5210628 GCCTGACCGATGACATTTGGGTTTCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCTCTTGATGTG
129 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
5210693 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
5210758 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5210823 -GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTC
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
5210887 TGCATGCCAACAAAAATACAAGGATGACATCTACCAAGTTTTGGGCCAAAACTCC-TTCCGAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCGAAAA
* * *
5210951 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATGGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
5211016 TGGCATAAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
5211081 ATTGGCATGCAAAAATATAAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * ** *
5211146 GCATCCCGTCTCTCTGCCCGACGTAGTGCCCGCCCGCCTGTCGGCCCGGCTACTCGTTTCGCCGG
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCC---C-GCCCGCCCGCTCGTTTCGTCGG
* * * * * ** * *
5211211 TTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTAAACTAAGGGTTACGGTAGCA
710 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-TGAGGGTTGTGGCAGTA
* * * * * * *
5211276 TGATCGGCAGCACGCAGAGGGGGACCCGACTGATGCCCAGCTTGCGTATCCCGCCCCTCTGGCAG
774 GGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCG
* *
5211341 GCTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
839 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
5211405 GCATATGGAGTTCATTCGCAATCTAAGATCAGACCAGACCGAAGGTTGCAGCAGCACATGATGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTGC-GCAGCACATGCTGGG
* * ** * * *
5211470 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCACGGCACCATCACCGTAGCATCGCCGAAGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
5211535 ACCTGACCGGCGGCATTGGCGTTTCGAAGATC-GGGGGGCCGGGGGGGTGTGAGCACATGATGTG
129 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
5211599 CGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
5211664 ACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
5211729 GGGGACACTTTTTTCAAATGGTTAAAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
5211794 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAAT-TTTTCCGAAGA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCGAAAA
* * * *
5211858 AATTTTAAAAAATCTCGAATCACAAAAAGTTTCAAAAATGGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
5211923 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
5211988 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
5212053 GCATCCCGTCTCTCTGGCCGACGTAGT----G-CCT---GCCTGCCCGCTCATTTCGTCGGTTGG
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * ***
5212110 GTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC--A-G-GGGTTGCCACAGTAGGATC
714 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATGAGGGTTGTGGCAGTAGGATC
* ** * * *
5212171 GGCAGCATGCAGAGGGGGACATGGCTGATCCTCGGCTTGCGTATCCCGCCCCTCTGGCCGGCTGA
779 GGCAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGA
* * * **
5212236 GCGCCGGCACGCTCGTTTCATTGGTTGACTTAGGCATACGAAGTTCATT--TTGTCTAA
844 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * * * *
5212293 TG-ATACGAAGTAAATTCCCAATCTATGATTGGATCAGACCGAGGTTTGTGGCAGCACATGCTGG
1 -GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGACCGAGGGTTG-CGCAGCACATGCTGG
* * * *** *
5212357 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCTTCGTCGGAGCATTATCAGAG
63 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * *
5212422 AATCTGACCGGCGGCGTTGGGGTTCCGATGATCGGGGGGGCC-GGGGGGTGTG-GCACATGATGT
128 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
5212485 GGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
** *
5212550 TGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
5212615 TGGGGACACTTTTTTGAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
**
5212680 GTGCATGTGAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCGAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCGAAA
** * ** *
5212745 AAATTTTAAAAAATGTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAA-AAAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
5212809 TTGCCTTGAAACTTCACGTGAAGGCCTAAGGGACGATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
5212874 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
583 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** * *
5212939 CGAATCCCGTCTCTCTGGCCGGTGTAGTGCCAC-CCCTCCCGCCCGCCCGCTTGTTTCGTTGGTT
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCC-CGCCCTCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * *
5213003 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGATGGAGGGTAGTGGCAGCAGG
712 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAT-GAGGGTTGTGGCAGTAGG
** *
5213068 ATCGGCAGCACATAGAGGGGGACCCGGCTGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGC
776 ATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGC
* * *
5213133 TGAGCGCCCGCATGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
5213195 GCATGCGGAGTTCATTCCCAGTCTAAGATCGGACCGCACCAATGGTTGCAGTAGCACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG-ACCGAGGGTTGC-GCAGCACATGCTGGG
* * * * * *
5213260 CTCGGGTATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGCCGGTGCATCACCGGGGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* *
5213325 ACCTGACTGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGAGGGGGTGTGCGCACATGATGTG
129 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
5213389 CGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
** * * *
5213454 AATCCCTCAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTGTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
5213519 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACCCTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
5213584 TGCATGCCAACAAAAATACAACGATCACATCTACCAAGCTTGGGGCCAAAAAT-CTTTTCGAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCGAAAA
* ** *
5213648 AATTTTAAAAAATCCCAAATGGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
5213713 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
5213778 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** * * * * *
5213843 GCATCCCATCTCTCTGGTTGACGTAGTACCCGTCCGCCCTCCCGCCCACTCGTTTCGTCGGTTGG
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * **
5213908 CTTAGGCATACGGACTTCATTCCTAGTCTAAGATCAGACCAGATCGAGAGTTGTGGCAGTAAAAT
714 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAT-GAGGGTTGTGGCAGTAGGAT
* * * * *
5213973 -GACAGCACACAGAGGGGGACCCGG-TCGATGCCCGGCTTGCGCATCCCACCCTTCTGGCCGGTT
778 CGGCAGCACGCAGAGGGGGACCCGGCT-GATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCT
* * * **
5214036 GAGCACCCGCACGTTTGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
5214097 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCACATTTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-CGACCGAGGGTTGCG-CAGCACATGCTGGG
* *** * * *
5214162 CTCGGGCGTGTGCTGGTGCCATTTTTTTCTTCGCTGGGGCACCATCGTCAGAGCATCGCTC-GAG
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGC-CGGAG
* * *
5214226 AACCTGACCGACGGCATTGGGGTTCCGACGACCGGGGGGGCCGGGGGTGGTGTGCACACATGATG
128 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG-GGTGTGCGCACATGATG
*
5214291 TGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTAT-CC-C-T---A-----AG-----
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
5214340 --A------T------CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
5214391 ATGGGGACACCTTTTTT-TAATGGTCACAAAATCTTGTACACTTCAAATTTTTTGCTGAATTGTT
322 ATGGGGACA-CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
5214455 TTGTGCATGCCAACAAAAATACAAGGATGACGTCTACC-AGGTTGGGAGCCAAAACTCCTTT-CA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-GCCAAAACTCCTTTCCG
* * *
5214518 AAAAAATTTTAAAAAATCCAGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTT
450 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * * * * *
5214583 GTCCTACCACGAAACTTCACGTAAAGGCTTAAGGGACCATGGTATGAATTTATAAGCCATAAAAA
515 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
5214648 TGGCATTGGCACATAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
580 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
** * * * * *
5214713 TTGCTTATCCCGTCTCTCTGGTCGGCGTAGTG-CCG-CC-CCTGCCCGCCCG-TTGTTTCGTCGA
645 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCCGCCCGCCCGCTCGTTTCGTCGG
* ** *
5214774 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGTGACAGTA
710 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-TGAGGGTTGTGGCAGTA
* * * * *
5214839 GGATAGGCAGCATGCAGAGGGGGACCC-GATCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCC
774 GGATCGGCAGCACGCAGAGGGGGACCCGGCT-GATCCCCGGCTTGCGCATCCCACCCCTCTGGCC
* * * *
5214903 GGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCGAA
838 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
5214968 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGCTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-CGACCGAGGGTTGCGC-AGCACATGCTGGG
** * *
5215033 CTCAAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGTACCAT---C---G--T---CGGAGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
5215087 ACCTGACCGGTGGCATTGAGGTTCCGAC-ATC-GGGGGGCC-GGGGGGTGTGTGCACATGATGTG
129 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* **
5215149 CGATGGGTGCTGGTACTTGGCCCGTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
5215214 ACCCCCTTAAAGAGAATTTGGGATTTTACAAGTTTGCTACCAATAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5215279 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * ** * *
5215344 TGCATGCCAAGAAAAATACAAGGATCACGTCTGCCAAGTTTGGAGCTAAAAAT-AATTCTGAAAT
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCGAAAA
* * * * *
5215408 AATTTTGAAAAATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
5215473 TGCCATGGAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
5215538 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
5215603 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCACCCGCCCTCATGCTCGTTTCGTTGG
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCCGCCCG-CC-C--GCTCGTTTCGTCGG
* * * * * *
5215668 TTGGCTTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGAACCAGACCGAAGGTTGGGGCAGTA
710 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-TGAGGGTTGTGGCAGTA
* *** * * * *
5215733 CGATTAACAGCACGTAGAGGGGGTCCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCTG
774 GGATCGGCAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCG
* * *
5215798 GCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCAAGTCTAA
839 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
5215862 GCATATTGTA-TTCATTCCCAGTC-AAGATCGGACCGGACCGAGGGTTGTGCCAGCACATGCTGG
1 GCATA-CGGAGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTGCG-CAGCACATGCTGG
* * * * ** * *
5215925 GCTCGGGCTTGTGATGGTGCCCCATTTTTCTTCACTAGGGCACCATCGTCGGAGCATCGTCGGAG
63 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * *
5215990 AACCTGACTGGCGGCATTGGGGTTCCAATGATCGGGGGGGCCGGGGGGGTGTGCGTACATGATGT
128 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
5216055 ACGATGGGTGCTTGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAATCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
5216119 CACCCCCTTAAAGAGC-TTCTGAGATTTTACAGGATTACTGCCAGTAGCCACTGAAGTGTCTAAA
258 CACCCCCTTAAAGAGCATT-TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
5216183 ATGGGGACATTTTTTTCAAATGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
5216248 TGTGCATGCCAAAAAAAATTCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCGAA
* ** * * *
5216312 AAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAAGTCA
452 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC-GAGTCG
* *
5216377 TCTTGCCATGACACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
5216442 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
581 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * * * *
5216507 TGCGCATCCCATCTCTCTAGCAGGCATAGTACCCGCCCGT-CCACCCGCCCGCTCATTTCGTTGG
646 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC-TCCCGCCCGCCCGCTCGTTTCGTCGG
* * * *
5216571 TCGGCTTAGGCACACGAAGTTTATTCCCAGTCTAAGATCG
710 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
5216611 AACCGAACCG
Statistics
Matches: 4545, Mismatches: 554, Indels: 218
0.85 0.10 0.04
Matches are distributed among these distances:
856 55 0.01
857 6 0.00
858 9 0.00
859 4 0.00
860 29 0.01
862 1 0.00
863 1 0.00
865 1 0.00
867 2 0.00
868 1 0.00
870 69 0.02
871 214 0.05
872 2 0.00
873 10 0.00
874 348 0.08
875 11 0.00
880 1 0.00
885 8 0.00
886 341 0.08
887 415 0.09
888 196 0.04
889 16 0.00
890 117 0.03
891 1 0.00
892 3 0.00
893 75 0.02
894 191 0.04
895 117 0.03
896 1 0.00
897 1 0.00
898 1 0.00
899 2 0.00
900 113 0.02
901 15 0.00
902 435 0.10
903 548 0.12
904 85 0.02
905 6 0.00
906 416 0.09
907 678 0.15
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGACCGAGGGTTGCGCAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAAC
CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATGAGGGTTGTGGCAGTAGGATCGG
CAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGC
GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5214107 original size:26 final size:26
Alignment explanation
Indices: 5214071--5214123 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5214061 GTTGACTTAG
5214071 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5214097 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5214123 G
1 G
5214124 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5217226 original size:621 final size:620
Alignment explanation
Indices: 5216005--5217235 Score: 1894
Period size: 621 Copynumber: 2.0 Consensus size: 620
5215995 GACTGGCGGC
* * *
5216005 ATTGGGGTTCCAATGATCGGGGGGGCCGGGGGGGTGTGCGTACATGATGTACGATGGGTGCTTGT
1 ATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGT
* *
5216070 ACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAATCTCGAGAACTCACACCCCCTTAAAGAGC
66 ACTTGGCACTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
5216135 TTCTGAGATTTTACAGGATTACTGCCAGTAGCCACTGAAGTGTCTAAAATGGGGACATTTTTTTC
131 TTCTGAGATTTTACAGGATTACTACCAGTAGCCACTAAAGTGTCTAAAATGGGGACACTTTTTTC
* *
5216200 AAATGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
196 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAAAAAAA
*
5216265 ATTCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
261 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* ** * *
5216330 GAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAAGTCATCTTGCCATGACACTTCA
326 AAACCACAAAAAGTTTCAAAAACCATGAAAAATAGAAAACAAAGTCATCTTGCCATGAAACTTCA
* * *
5216395 CGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAA
391 CGTGAAGGCTTAAAGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTGGCATGTAGAAA
* * * * *
5216460 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCT
456 TATGAAGATATGCCTAAACCCACCTACCACACAATCGATCAACGGCTTGCGCATCCCACCTCTCT
* * *
5216525 AGCAGGCATAGTACCCGCCCGTCCACCCGCCCGCTCATTTCGTTGGTCGGCTTAGGCACACGAAG
521 AGCAGGCATAGTACCCGCCCGTCCACCCGCCAGCTCATTTCGTCGGTCGACTTAGGCACACGAAG
* *
5216590 TTTATTCCCAGTCTAAGATCGAACCGAACCGAGGG
586 TTCATTCCCAGTCTAAGATCAAACCGAACCGAGGG
** * * * *
5216625 ATTGGGGTTCCGGCGATCGGGGGGGTCGGGGGGGGTGTGCGCATATGATGTGCTATGGGTGCTGG
1 ATTGGGGTTCCAACGATCGGGGGGG-CCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGG
5216690 TACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
65 TACTTGGCACTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
5216755 GCATT-TGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTC-AGAAATGGGGACACTTT
129 GC-TTCTGAGATTTTACAGGATTACTACCAGTAGCCACTAAAGTGTCTA-AAATGGGGACACTTT
5216818 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAAA
192 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAAA
* * *
5216883 AAAAATACAGGGATCACGTCTACCAAGTTTGGGGGCAAAACTCCTT-TGAAAAAAATTTTAAAAA
257 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAA
* * * *
5216947 ATCCCAAACCGCAAAAAGTTTCAAAAACCGTGAAAAATAGAAAACGAA-TCGTCTTGCCATGAAA
321 ATCCCAAACCACAAAAAGTTTCAAAAACCATGAAAAATAGAAAACAAAGTCATCTTGCCATGAAA
5217011 CTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTGGCATGT
386 CTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTGGCATGT
* *
5217076 AGAAATATGAAGATATGCCTAAACCCACCTACCACACAATCGATCAATGGCTTGCGCATCCCGCC
451 AGAAATATGAAGATATGCCTAAACCCACCTACCACACAATCGATCAACGGCTTGCGCATCCCACC
* * * * * *
5217141 TCTCTGGCTGGCATAGTGCCCGCTCGTCCGCCCGCCAGCTCATTTCGTCGGTCGACTTAGGCATA
516 TCTCTAGCAGGCATAGTACCCGCCCGTCCACCCGCCAGCTCATTTCGTCGGTCGACTTAGGCACA
* *
5217206 CGGAGTTCATTCCTAGTCTAAGATCAAACC
581 CGAAGTTCATTCCCAGTCTAAGATCAAACC
5217236 AAACTAAGGG
Statistics
Matches: 551, Mismatches: 55, Indels: 9
0.90 0.09 0.01
Matches are distributed among these distances:
620 22 0.04
621 269 0.49
622 258 0.47
623 2 0.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (620 bp):
ATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGT
ACTTGGCACTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
TTCTGAGATTTTACAGGATTACTACCAGTAGCCACTAAAGTGTCTAAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAAAAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
AAACCACAAAAAGTTTCAAAAACCATGAAAAATAGAAAACAAAGTCATCTTGCCATGAAACTTCA
CGTGAAGGCTTAAAGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTGGCATGTAGAAA
TATGAAGATATGCCTAAACCCACCTACCACACAATCGATCAACGGCTTGCGCATCCCACCTCTCT
AGCAGGCATAGTACCCGCCCGTCCACCCGCCAGCTCATTTCGTCGGTCGACTTAGGCACACGAAG
TTCATTCCCAGTCTAAGATCAAACCGAACCGAGGG
Found at i:5217389 original size:26 final size:26
Alignment explanation
Indices: 5217360--5217412 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5217350 GTTGACTTAG
5217360 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5217386 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5217412 G
1 G
5217413 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5218562 original size:895 final size:890
Alignment explanation
Indices: 5216625--5219122 Score: 3326
Period size: 895 Copynumber: 2.8 Consensus size: 890
5216615 GAACCGAGGG
* * * *
5216625 ATTGGGGTTCCGGCGATCGGGGGGGTCGGGGGGGGTGTGCGCATATGATGTGCTATGGGTGCTGG
1 ATTGGGGTTCCGACGATCGGGGGGG-C-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
5216690 TACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
64 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
* *
5216755 GCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCAGAAATGGGGACACTTTTT
129 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
5216820 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAAAAA
194 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* * *
5216885 AAATACAGGGATCACGTCTACCAAGTTTGGGGGCAAAACTCCTTTGAAAAAAATTTTAAAAAATC
259 AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTG-AAAAAATTTTAAAAAATC
* * * * * *
5216950 CCAAACCGCAAAAAGTTTCAAAAACCGTGAAAAATAGAAAACGAATCGTCTTGCCATGAAACTTC
323 TCGAACTGCAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * * *
5217015 ACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTGGCATGTAGAA
388 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAA
* * * * *
5217080 ATATGAAGATATGCCTAAACCCACCTACCACACAATCGATCAATGGCTTGCGCATCCCGCCTCTC
453 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCATCCCGTCTCTC
* * * *
5217145 TGGCTGGCATAGTGCCCGCTCGTCCGCCCGCCAGCTCATTTCGTCGGTCGACTTAGGCATACGGA
518 TGGCCGGCGTAGTG--C-C-CGT----CCGCCAGCTCATTTCGTC-GTTGGCTTAGGCATACGGA
** * ** * * * * ** *
5217210 GTTCATTCCTAGTCTAAGATCAAACCAAACTAAGGGATGCAATAGCAGGACTGATAGCACATAG-
574 GTTCATTCC-AGTCTAAGATCGGACCAGACCGAGGTATGCAGTAGAAGGATTGGCAGCACACAGA
* * * * * * *
5217274 AGGAGGACCCAACCGAT-CCTCGGCTTGCGCATTCTGCCCCTCTAGTCGACTGAGCGCCCGCATG
638 AGG-GGACCCAGCCGATCCCT-GGCTTACGCATCCCGCCCCTCTAGCCGACTGAGCACCCGCACG
* ** *
5217338 CTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTT
701 CTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAAGAGTTCATTC
* * ** *
5217403 CCAGTCTAAGATCGGATCGAACCGAGGGTTGCGACAGCACATGCTGGGCCCAGGCATGTGTTGCT
766 CCAGTCTAAGATCAGACCGAACCGACAGTTGCGACAGCACATGCTGGGCCCAGGCATGCGTTGCT
* ** * * * *
5217468 GTCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCACCGCCTGAGAACCTGACCTACGGC
831 GT--CATTTTTCTTCACCGGAGCACCATCACCGAAGCACCACCGGAGAACCTGACCTACAGC
* * * *
5217530 ATTAGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATAATGTGTGATGGGTGCTGGTA
1 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
5217595 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCAAGAACTCACACGCCCTTAAAGAGC
66 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
5217660 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTC
131 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
5217724 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAAAAAAA
196 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
* * *
5217789 ATAGAAGGATCATGTCTACCAAGTTTGGGCCCAAAACTCCTTCTGAAAAAATTTAAAAAAAATCT
261 ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT-TGAAAAAATTT-TAAAAAATCT
* *
5217854 CGAACTGCAAAAAGTTTAAAAAATCATGAAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTCA
324 CGAACTGCAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
5217919 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAA
389 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAA
* * *
5217984 TATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCGTGCGCATCCCGTCTCTCT
454 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCATCCCGTCTCTCT
* *
5218049 GGCCGGCGTAGTGCCCGTCCGCCTGCTCATTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCT
519 GGCCGGCGTAGTGCCCGTCCGCCAGCTCATTTCGTC-GTTGGCTTAGGCATACGGAGTTCATTC-
* * *
5218114 CAGTTTAAGATCGGACCGGACCGAGGTATGCAGTAGAAGGATTGGCAACACACAGAAGGGGACCC
582 CAGTCTAAGATCGGACCAGACCGAGGTATGCAGTAGAAGGATTGGCAGCACACAGAAGGGGACCC
* * * * * *
5218179 AGTCGATCCCTGGCTTACGCATCCCGCCCTTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTT
647 AGCCGATCCCTGGCTTACGCATCCCGCCCCTCTAGCCGACTGAGCACCCGCACGCTCATTCCGTG
*
5218244 GGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATAAAGAGTTCATTCCCAGTCTAAGA
712 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAAGAGTTCATTCCCAGTCTAAGA
* * * *
5218309 TCAGACC-AGACCGACAGTTGTGGCAGCACATGCTGGGCTCGGGCATGCGTTAGTGCTGT-ATTT
777 TCAGACCGA-ACCGACAGTTGCGACAGCACATGCTGGGCCCAGGCATGCG-T--TGCTGTCATTT
** * *
5218372 TTCTTCGTCGGAGCACCATCACCGAAGCATCACCGGAGAACCTGA-CTGGCAGC
838 TTCTTCACCGGAGCACCATCACCGAAGCACCACCGGAGAACCTGACCT-ACAGC
* *
5218425 ATTGGGGTTTCGACAATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
1 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
5218490 CTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTGAAAGAGC
66 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
5218555 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
131 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
5218620 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAC
196 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
* *
5218685 ATACAAGGATCATGTATACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCTC
261 ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTT-GAAAAAATTTTAAAAAATCTC
* ** * *
5218750 GAACTGCAGAAAGTTTTGAAAATCGTGAAAAATAGAAAAATGAGTTGTCTTGCCATGAAACTTCA
325 GAACTGCAAAAAGTTTAAAAAATCGTGAAAAATAG-AAAACGAGTCGTCTTGCCATGAAACTTCA
* * ** * *
5218815 TGTGAAGGCTTACGGGATGATAGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAG
389 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAA
* * * *
5218880 TATGAAGATGTACCTAAACCCACCTACCATCCTATCGATCTACGG-TTGGCGCATCCCATCTCTC
454 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTT-GCGCATCCCGTCTCTC
* * * *
5218944 TGGCCGACGTAGTGCCCGCCCGCCCGCTCATTTCGTCGATTGGCTGAGGCATACGGAG-TCATTC
518 TGGCCGGCGTAGTGCCCGTCCGCCAGCTCATTTCGTCG-TTGGCTTAGGCATACGGAGTTCATT-
* * * * ** * *
5219008 CCAGTCTAAGATCGGACCAGATCGAGGGT-TACAGCAGTAGGATCAGCAGCACGCAGAAGAGGAC
581 CCAGTCTAAGATCGGACCAGACCGA-GGTATGCAGTAGAAGGATTGGCAGCACACAGAAGGGGAC
* ** *
5219072 CC-GACCGATCCCTGGCTTACGCTTTTCGCCCCCCTTA-CCGACTGAGCACCC
645 CCAG-CCGATCCCTGGCTTACGCATCCCGCCCCTC-TAGCCGACTGAGCACCC
5219123 ATACGGAGTT
Statistics
Matches: 1408, Mismatches: 166, Indels: 48
0.87 0.10 0.03
Matches are distributed among these distances:
894 4 0.00
895 589 0.42
896 319 0.23
898 6 0.00
899 3 0.00
900 1 0.00
901 1 0.00
902 115 0.08
903 346 0.25
904 1 0.00
905 23 0.02
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.25
Consensus pattern (890 bp):
ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTGAAAAAATTTTAAAAAATCTCG
AACTGCAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCATCCCGTCTCTCTGG
CCGGCGTAGTGCCCGTCCGCCAGCTCATTTCGTCGTTGGCTTAGGCATACGGAGTTCATTCCAGT
CTAAGATCGGACCAGACCGAGGTATGCAGTAGAAGGATTGGCAGCACACAGAAGGGGACCCAGCC
GATCCCTGGCTTACGCATCCCGCCCCTCTAGCCGACTGAGCACCCGCACGCTCATTCCGTGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAAGAGTTCATTCCCAGTCTAAGATCAG
ACCGAACCGACAGTTGCGACAGCACATGCTGGGCCCAGGCATGCGTTGCTGTCATTTTTCTTCAC
CGGAGCACCATCACCGAAGCACCACCGGAGAACCTGACCTACAGC
Found at i:5221613 original size:8 final size:8
Alignment explanation
Indices: 5221600--5221626 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
5221590 GCCGACGTAG
5221600 TGCCCGCC
1 TGCCCGCC
5221608 TGCCCGCC
1 TGCCCGCC
5221616 TGCCCGCC
1 TGCCCGCC
5221624 TGC
1 TGC
5221627 TCGTTTCATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.00, C:0.59, G:0.26, T:0.15
Consensus pattern (8 bp):
TGCCCGCC
Found at i:5222311 original size:896 final size:889
Alignment explanation
Indices: 5220923--5226136 Score: 6260
Period size: 868 Copynumber: 5.9 Consensus size: 889
5220913 GTTGACTTAG
* *
5220923 GCATACGGAGTTCATTCCCAGTCTTAGATCAGACCAGACCGAGGGTTGCGGCCA-TACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG-CAGCACATGCTGG
* * * *
5220987 GCTCAAGCATGTGTTGGTGCCACATTTTTCTTTGCCGAGGCACCATCGTCGGAGCATCGTCGAAA
65 GCTCGAGCATGTGTTGGTGCCACATTTTTCTTCG-CGGGGCACCATCGT----G--TCG--G-AG
* * *
5221052 AACCTGACCGACGACATTGGGGTTTCGACGATCGGGGGGGCTGAGGGGGGGTGTGCGCACATGAT
120 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC---GGGGGGGTGTGCGCACATGAT
* *
5221117 GTGCGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
182 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACT
* * * * ** *
5221182 GACACCCCCTTAAAAAGCAATTAAGATTTTACAGGTTTGCTATCAGTAGCCATTAAAGTGTCTAA
246 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
5221247 AATGGGGACATTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
311 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTT
* * * *
5221312 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAAGTCCTTCTGAA
375 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* *
5221377 AAAATTTTAAAAAATCCCGAACCGCAACAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGT
440 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
5221442 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTAAAAGGCATAAAAATG
505 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
5221507 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATGCACGGCTT
570 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
5221572 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCTGCCCGCCTGCTCGTTTCATC
635 GCGCATCCCGTCTCTCTGGCCGACGTAGTG--CGCCCGCCCGCCTG--C-CC-GCTCGTTTCATC
* * *
5221637 GGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAG
694 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAG
* * * * * *
5221702 CAGGATCGGTAGCACGTAGAGGGGGACCTGGCCGATCCCCGGCTTCCGTATCCCGCCCCTCTGGT
759 CAGGATCGGCAGCACGCAGAGGGGGACCTGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGC
* * ** *
5221767 CGGCTGAGCTCCCGCACGCTCGTTTCATTGGTTGACTTAGGCATATAGAGTTCATTCCTAGTCTA
824 CGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
5221832 A
889 A
*
5221833 GCATACGGAGTTCATTCCCAGTCTAAGATTC-GACCAGACCGAGGGTTGTGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* *** * *
5221897 GCTCGGGCATGTGTTGGTGTTGCATTTTCCTTCGACTGGGCACCATCGT-T-GGAGAACCTGACC
65 GCTCGAGCATGTGTTGGTGCCACATTTTTCTTCG-CGGGGCACCATCGTGTCGGAGAACCTGACC
* * * * *
5221960 GGCGGCATTGGGGTTCCGGCAATCGGGGGGGCGGGGGGGTGTGCGCCCAGGATGTGTGATGGGTG
129 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
5222025 CTAGTACTTGGACCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
194 CTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
*
5222090 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGACACT
258 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
5222155 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTGTTTTGTGCATGCCA
323 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCA
* * *
5222220 ACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCTAAAAATCCTTCCGAAAAAATTTTAAAA
387 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* *
5222285 ATTCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
452 AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
5222350 CTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
517 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * *
5222415 AGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCTGTC
582 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * *
5222480 TCTTTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATT
647 TCTCTGGCCGACGTAGTG--CGCCCGCCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATA
* * * * *
5222545 CGGATTTCATTCCAAGTCTAAGACCAGACAAGACCAAGGGTTGCAGG-AGCAGGATCGGCAGCAC
710 CGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGC-GGCAGCAGGATCGGCAGCAC
* ** * * * * *
5222609 GCAGAGGGGGATCTGATCGATCCCCGACTTGTGCATCTCGCCCCTCTGGCCGACTGAGCACCTGT
774 GCAGAGGGGGACCTGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGC
* *
5222674 ATGCTCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAA
839 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * **
5222725 GCATACGAAGTTAATTTCCAGTCTAAGATCGGATCAGACCGAGGGTTACGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
5222790 CTCGAACATGTGTTGTTGTCGCATTTTTCTTCGCCGGAGCACCATTGTAGGGGCATCGCCGGAGA
66 CTCGAGCATGTGTTGGTGCCACATTTTTCTTCG-CGGGGCACCATCGT----G--T---CGGAGA
* *
5222855 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGAAGGGGGTGTGGGCACATGATG
121 ACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGGCGG--GGGGGTGTGCGCACATGATG
* * * *
5222920 TGTGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCATATCCCTCATCAATCCTCAAGAAATC
183 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCAAGAACTC
*
5222985 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
247 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
5223050 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAATTTTT
312 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTT
** ** ** *
5223115 TACGCATGCCAACAAAAATACAAGGATCACGTCTATGAAGTTTAAGGCCAAAACTCCTTCCGATA
376 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
5223180 AAATTTTAAAAAATCTCGAACCGTAACAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
441 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
5223245 TTGCCATCAAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATG
506 TTGCCAT-GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
5223310 GCATTGCCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
570 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
5223375 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCATCGGTT
635 GCGCATCCCGTCTCTCTGGCCGACGTAGTG--CGCCCGCCCGCCTGCCCGCTCGTTTCATCGGTT
* * * **
5223440 GGCTTAGGCATACAGAGTTCATTCCCAGTCTTAGATCAGACTGGATTGAGGGTT-----A-C-GG
698 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGG
* * * * * * *
5223498 -T-AGCAGCACGCAGAGGGCGACCTGGCAGATCCTCGGCTTACGCATCCCGCCCCTCTGGCTGGC
763 ATCGGCAGCACGCAGAGGGGGACCTGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * * *
5223561 TAAGCACCTGCACGCTCGTTTCGTAGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCCAA
828 TGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*** *
5223623 G-AT-C-G-G---A----C---C---G----GA-C---CC-AGGGTTATAGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
5223662 CTCGTGCATATGCTAGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCTTCGTTGGAGA
66 CTCGAGCATGTGTTGGTGCCACATTTTTCTTCG-CGGGGCACCAT---C---G--T-GTCGGAGA
* * * * *
5223727 ACCTGATCGGCGGCATTGGGGTTGCAACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGT
121 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
* * *
5223791 GATGGGTGCTGGCACTTGGCCCTTATATTGGCCTCCTATCTCTCATCAAACCTCGAGAACTCACA
186 GATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATCAAACCTCAAGAACTCACA
*
5223856 CCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
250 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
5223921 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATT-AACTTTTTAGTTGAATTTCTTTG
315 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTT-TTTG
* *
5223985 TGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
378 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
5224050 AGTTTT-AAAAATCCTGAACCGCAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
443 A-TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
5224114 TGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGC
507 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
5224179 ATTCGCACGTAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGACTTGC
572 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
5224244 GCATCCCGTCTCTCT-GCTC-ATCGTAGT--GCCCG--C-CC-GCCCACTCGTTTCATCGGTTGG
637 GCATCCCGTCTCTCTGGC-CGA-CGTAGTGCGCCCGCCCGCCTGCCCGCTCGTTTCATCGGTTGG
* * * * *
5224301 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCTAGGGTTGTGGCAACAGGAT
700 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGAT
* ** * *
5224366 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCTAACTTGCGCATCCTGCCCCTCTGGGCGGCTG
765 CGGCAGCACGCAGAGGGGGACCTGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
5224431 AGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
830 AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** ** *
5224491 GCATACAGAGTCCTTTCCCAACCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * * *
5224556 CTCGGGCATTTGCTGGTGCCGTATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCGCTAGGAA
66 CTCGAGCATGTGTTGGTGCCACATTTTTCTTCG-CGGGGCACCAT---C-GTG--TCG-GA-GAA
* * * * * * * *
5224621 CATGAGCGACGGCATTGGGGTTTCGACGATCGGAGGGGCCGGAGGGGTGTGTGCACATGATGTAC
122 CCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGGCGGGGGGGTGTGCGCACATGATGTGC
* * *
5224686 GATGGGTGCTGGTACATGGCCCTTCTATTGGCCCCCTATCACTCATCAAACCTCAAGAACTCACA
186 GATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * *
5224751 CCCTCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
250 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
5224816 GGGACACTTTTTTCAAATGGTCACAAAACCTTATACACTTCGAGTTTTTAGCTGAATTATTT-TG
315 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTG
** *
5224880 --TG------------C----AT---G----CCAAGTTTGGGGTGAAAAATCCTTCCGAAAAAAT
380 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * ** **
5224920 TTTAAAAAATCTC-AGACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTG
445 TTTAAAAAATCCCGA-ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
5224984 CCATTAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCAT
509 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
5225049 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTTTTGATCCACGGCTTGCGC
574 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
5225114 ATCCCGTCTCTCTGGCCGGCGTA--GCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGATTA
639 ATCCCGTCTCTCTGGCCGACGTAGTGCGCCCGCCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTA
* * * * * * *
5225177 TGCATACGGAGTTCATTGCTAGTCTAAGATCAGACTGGACTGAGGATTGCGGTAGCAGGATCGGC
704 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * *
5225242 AGCACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTAGCCGACTGAGCG
769 AGCACGCAGAGGGGGACCTGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
* * * *
5225307 CCCGCACGTTCATTTCATGGGTTGACTTAGACATACGGAGTTCCTTCCCAGTCTAA
834 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
5225363 GCATATGGAGTTCATTCCTAGTCGAAGATCAGACCAGACCGAGGGTTGTGGTC-GCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG-CAGCACATGCTGG
* * *
5225427 GCTCGAGCATGTGCTT-GTGCTACATTTTTCTTCATCGGGGCACCATCACCAGAGCATCGTCAGA
65 GCTCGAGCATGTG-TTGGTGCCACATTTTTCTTC-GCGGGGCACCAT---C---G--T-GTCGGA
* * * ** ** * * *
5225491 AAACCTGGCTGGCGAAATAAGAGTTCCGACGATCGGGGGGGCCAGGGGGTGTGTGTTCGCACATT
119 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-C-GGGGG-G-GTGTGCGCACATG
* *
5225556 ATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCAAGAG
180 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCCCTCATCAAACCTCAAGAA
* *
5225621 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTTT
244 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
5225686 GAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAATTT
309 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TT
* * * * * * *
5225751 TTTTATGCATACCAGCAAAAATAGAAGGATCATGTCTACCTAGTTTGGGGCCAAAACTCCTTCCA
373 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
*
5225816 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
438 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* **
5225881 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAAATATTGTATGAATTTACAAGCCATAAAAA
503 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
5225946 TCGCATTGGCATGCAAAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCCATGGC
568 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
5226011 TTGCGCATCCCGTCTCTCTGGCCGACGTA--GCGCCCGCCCGTCC-GCCCGCTCGTTTCATCGGT
633 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCGCCCGCCCG-CCTGCCCGCTCGTTTCATCGGT
* * *
5226073 TGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCA
697 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCA
5226137 CATGCTGGGC
Statistics
Matches: 3713, Mismatches: 460, Indels: 269
0.84 0.10 0.06
Matches are distributed among these distances:
859 65 0.02
860 2 0.00
861 1 0.00
863 5 0.00
864 1 0.00
865 1 0.00
866 5 0.00
867 149 0.04
868 638 0.17
869 12 0.00
870 9 0.00
871 3 0.00
872 364 0.10
873 28 0.01
874 6 0.00
875 9 0.00
876 186 0.05
877 9 0.00
878 3 0.00
879 2 0.00
880 2 0.00
881 1 0.00
882 1 0.00
884 1 0.00
885 1 0.00
887 1 0.00
889 3 0.00
891 7 0.00
892 271 0.07
893 37 0.01
894 70 0.02
895 195 0.05
896 482 0.13
897 2 0.00
898 104 0.03
899 40 0.01
900 3 0.00
901 1 0.00
902 2 0.00
903 342 0.09
904 11 0.00
905 4 0.00
906 315 0.08
907 221 0.06
909 2 0.00
910 94 0.03
911 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (889 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGTTGGTGCCACATTTTTCTTCGCGGGGCACCATCGTGTCGGAGAACCTGACCGG
CGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
CCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGACGTAGTGCGCCCGCCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGG
GGGACCTGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCG
TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5224892 original size:868 final size:870
Alignment explanation
Indices: 5223597--5226133 Score: 3041
Period size: 903 Copynumber: 2.8 Consensus size: 870
5223587 GTTGACTTAG
* * * * * *** * *
5223597 GCATACAGAGTTCATTCCCAGTCC-AAGATCGGACCGGACCCAGGGTTATAGCAGCACATGCTAG
1 GCATACAGAGTCCATTCCCA-ACCGAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGG
* * *
5223661 GCTCGTGCATATGCTAGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCTTCGTTGGAG
65 GCTCGAGCATATGCTAGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCG-TAGAG
* * * * *
5223726 AACCTGATCGGCGGCATTGGGGTTGCAACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGT
129 AACCTGAGCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGTGCACATGATGTGC
* * * *
5223791 GATGGGTGCTGGCACTTGGCCCTTATATTGGCCTCCTATCTCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCAAGAACTCACA
* *
5223856 CCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
* * * *
5223921 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATT-AACTTTTTAGTTGAATTTCTTTG
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTT-ATT-
*
5223985 TGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
386 T--ATG---------ATGCA---AT-A-G--T-CCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* *
5224050 AGTTTT-AAAAATCCTGAACCGCAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
432 A-TTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
5224114 TGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGC
496 TGCCATGAAACTTCACGTGAAGGCTTAAG-GACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
5224179 ATTCGCACGTAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGACTTGC
560 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
5224244 GCATCCCGTCTCTCT-GCTCATCGTAGTGCCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGC
625 GCATCCCGTCTCTCTGGC-CA-CGTAGCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGC
* * *
5224308 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCTAGGGTTGTGGCAACAGGATCGGCAGC
688 ATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCTAGGGTTGCGGCAACAGGATCGGCAGC
* * * * * * *
5224373 ACGCAGAGGGGGACCCGGCCGATCCCTAACTTGCGCATCCTGCCCCTCTGGGCGGCTGAGCACCC
753 ACACAGAGGGGGACCCGACCGATCCCCAACTTGCGCATCCCGCCCCTCTAGCCGACTGAGCACCC
* * * *
5224438 GTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
818 GCACGCTCATTTCATGGGTTGACTTAGACATACGGAGTTCATTCCCAGTCTAA
* * **
5224491 GCATACAGAGTCCTTTCCCAACCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACAGAGTCCATTCCCAACCGAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * ** * *
5224556 CTCGGGCATTTGCTGGTGCCGTATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCGCTAG-GA
66 CTCGAGCATATGCTAGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCG-TAGAGA
* * * *
5224620 ACATGAGCGACGGCATTGGGGTTTCGACGATCGGAGGGGCCGGAGGGGTGTGTGCACATGATGTA
130 ACCTGAGCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCGG-GGGGTGTGTGCACATGATGTG
* *
5224685 CGATGGGTGCTGGTACATGGCCCTTCTATTGGCCCCCTATCACTCATCAAACCTCAAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCAAGAACTCAC
* *
5224750 ACCCTCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
* *
5224815 GGGGACACTTTTTTCAAATGGTCACAAAACCTTATACACTTCGAGTTTTTAGCTGAA-TTATTT-
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTATTTA
** * * *
5224878 TG-TGC-AT-G-CCAAGTTTGGGGTGAAAAATCCTTCCGAAAAAATTTTAAAAAAT-CTCAGACC
388 TGATGCAATAGTCCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGA-ACC
** ** * *
5224938 GTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAAGTTCACGTGAA
452 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
5225003 GGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCACGTAGAAATATGAA
517 GGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAA
* * *
5225068 GATGTGCCTAAACCCACCTACCACCCTTTTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
581 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-A
* * * * *
5225133 CGTAGCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGATTATGCATACGGAGTTCATTGCTA
645 CGTAGCGCCCGCCCG--C-C-CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * *
5225198 GTCTAAGATCAGACTGGA-CTGAGGATTGCGGTAGCAGGATCGGCAGCACACAGAGGGGGACCCG
706 GTCTAAGATCAGACTAGACCT-AGGGTTGCGGCAACAGGATCGGCAGCACACAGAGGGGGACCCG
* * *
5225262 ACCGATCCCCGACTTGCGCATCCCGCCCCTCTAGCCGACTGAGCGCCCGCACGTTCATTTCATGG
770 ACCGATCCCCAACTTGCGCATCCCGCCCCTCTAGCCGACTGAGCACCCGCACGCTCATTTCATGG
*
5225327 GTTGACTTAGACATACGGAGTTCCTTCCCAGTCTAA
835 GTTGACTTAGACATACGGAGTTCATTCCCAGTCTAA
** * * ** * *
5225363 GCATATGGAGTTCATTCCTAGTCGAAGATCAGACCAGACCGAGGGTTGTGGTCGCACATGCTGGG
1 GCATACAGAGTCCATTCCCAACCGAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * * * *
5225428 CTCGAGCATGTGCTTGTGCTACATTTTTCTTCATCGGGGCACCATCACCAGAGCATCGTCAGAAA
66 CTCGAGCATATGCTAGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGT-AGAGA
** ** * *
5225493 ACCTG-GCTGGCGAAATAAGAGTTCCGACGATCGGGGGGGCCAGGGGGTGTGTGTTCGCACATTA
130 ACCTGAGC-GGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGG-GTGTG-T-GCACATGA
* * * *
5225557 TGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCAAGAGC
189 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCAAGAAC
*
5225622 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTTTG
254 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTG
* * *
5225687 AAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAATTTT
319 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTA
* *
5225752 TTTATGCATACCAGCAAAAATAGAAGGATCATGTCTACCTAGTTTGGGGCCAAAACTCCTTCCAA
384 TTTATG-AT----GC---AAT---A-G-TC----C-A---AGTTTGGGGCCAAAACTCCTTTCGA
*
5225817 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
428 AAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
**
5225882 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAAATATTGTATGAATTTACAAGCCATAAAAAT
493 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGG-ACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * * *
5225947 CGCATTGGCATGCAAAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCCATGGCT
557 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
*
5226012 TGCGCATCCCGTCTCTCTGGCCGACGTAGCGCCCGCCCGTCCGCCCGCTCGTTTCATCGGTTGAC
622 TGCGCATCCCGTCTCTCTGGCC-ACGTAGCGCCCG--C--CCGCCCGCTCGTTTCATCGGTTGGC
* * *
5226077 TTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCA
682 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCTAGGGTTGCGGCA
5226134 GCACATGCTG
Statistics
Matches: 1409, Mismatches: 178, Indels: 103
0.83 0.11 0.06
Matches are distributed among these distances:
867 7 0.00
868 226 0.16
869 3 0.00
870 1 0.00
871 4 0.00
872 284 0.20
873 31 0.02
874 9 0.01
875 3 0.00
876 184 0.13
877 5 0.00
878 2 0.00
879 2 0.00
880 1 0.00
884 2 0.00
888 2 0.00
889 2 0.00
892 1 0.00
893 36 0.03
894 115 0.08
895 188 0.13
899 1 0.00
900 1 0.00
902 2 0.00
903 288 0.20
904 4 0.00
905 2 0.00
907 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (870 bp):
GCATACAGAGTCCATTCCCAACCGAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
CTCGAGCATATGCTAGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTAGAGAA
CCTGAGCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCAAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTATTTATGA
TGCAATAGTCCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAA
AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
TAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCACGTAGC
GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
AGACTAGACCTAGGGTTGCGGCAACAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCA
ACTTGCGCATCCCGCCCCTCTAGCCGACTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGA
CATACGGAGTTCATTCCCAGTCTAA
Found at i:5226735 original size:714 final size:714
Alignment explanation
Indices: 5225363--5226819 Score: 2120
Period size: 714 Copynumber: 2.0 Consensus size: 714
5225353 CCCAGTCTAA
* * *
5225363 GCATATGGAGTTCATTCCTAGTCGAAGATCAGACCAGACCGAGGGTTGTGGTCGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTCGCACATGCTGGG
*
5225428 CTCGAGCATGTGCTTGTGCTACATTTTTCTTCATCGGGGCACCATCACCAGAGCATCGTCAGAAA
66 CTCGAGCATGTGCTTGTGCTACATTTTTCTTCATCGGGGCACCATCACCAGAGCATCGCCAGAAA
* * * *
5225493 ACCTGGCTGGCGAAATAAGAGTTCCGACGATCGGGGGGGCCAGGGGGTGTGTGTTCGCACATTAT
131 ACCTGACCGGCGAAATAAGAGTTCCGACGATCGGGGGCGCCAGGGGGTGTGTGTTCGCACATGAT
* *
5225558 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCAAGAGCT
196 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* * * * *
5225623 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTTTGA
261 CACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAA
* *
5225688 AATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAATTTTT
326 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAAATTTT
** * * * *
5225753 TTATGCATACCAGCAAAAATAGAAGGATCATGTCTACCTAGTTTGGGGCCAAAACTCCTTCCAAA
391 TTATGCATACCAAAAAAAATACAAGGATCATGTCTACCAAGCTTGGGGCCAAAACACCTTCCAAA
5225818 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
456 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
5225883 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGAAATATTGTATGAATTTACAAGCCATAAAAATC
521 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGAAACATTGTATGAATTTACAAGCAATAAAAATC
** * * *
5225948 GCATTGGCATGCAAAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCCATGGCTT
586 GCATTGGCACACAAAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
5226013 GCGCATCCCGTCTCTCTGGCCGACGTAGCGCCCGCCCGTCCGCCCGCTCGTTTCATCGGTTGACT
651 GCGCATCCCGTCTCCCTGGCCGACGTAGCGCCCG--C--CCGCCCACTCGTTTCATCGGTTGACT
*
5226078 TAG
712 GAG
* *
5226081 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGG-CAGCACATGCTGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTC-GCACATGCTGG
* * ** * *
5226145 GCTCGGGCATGTG-TTGGTG-TCGCATTTTTCTTTGTCGGGGCACCATCACCGGAGCATCGCCGG
65 GCTCGAGCATGTGCTT-GTGCT-ACATTTTTCTTCATCGGGGCACCATCACCAGAGCATCGCCAG
* ** * * * * *
5226208 AGAACCTGACCGGCGGCATTAGGGTTCCGGCGATCGGGGGCGTC-GGGGG-G-GTG-TGGCACAT
128 AAAACCTGACCGGCGAAATAAGAGTTCCGACGATCGGGGGCGCCAGGGGGTGTGTGTTCGCACAT
** * *
5226269 GATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGA
193 GATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
* *
5226334 ACTGACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTATCAGTAGCCATTAAAGTGTC
258 ACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTC
*
5226399 TAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAAT
323 TAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAAAT
* * * *
5226464 TTTTTGTGCATGCCAAAAAAAATACAAGGATCGTGTCTACCAAGCTTGGGGCCCAAACACCTTCC
388 TTTTTATGCATACCAAAAAAAATACAAGGATCATGTCTACCAAGCTTGGGGCCAAAACACCTTCC
* * * *
5226529 GAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCTTTAAAAATAGAAAACGAGT
453 AAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* * *
5226594 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGAATAAAA
518 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAAACATTGTATGAATTTACAAGCAATAAAA
* * *
5226659 ATGGCATTGGCACACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCTACGG
583 ATCGCATTGGCACACAAAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
5226724 CTT-CTGCATCCCGTCTCCCTGGCCGACGTAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCT
648 CTTGC-GCATCCCGTCTCCCTGGCCGACGTAGCGCCCGCCCGCCCACTCGTTTCATCGGTTGACT
5226788 GAG
712 GAG
*
5226791 GCATATGGAGTTCATTCCCAGACTAAGAT
1 GCATATGGAGTTCATTCCCAGTCTAAGAT
5226820 TGGATCAGAT
Statistics
Matches: 661, Mismatches: 74, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
710 53 0.08
712 1 0.00
713 1 0.00
714 451 0.68
715 3 0.00
716 1 0.00
717 9 0.01
718 142 0.21
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (714 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTCGCACATGCTGGG
CTCGAGCATGTGCTTGTGCTACATTTTTCTTCATCGGGGCACCATCACCAGAGCATCGCCAGAAA
ACCTGACCGGCGAAATAAGAGTTCCGACGATCGGGGGCGCCAGGGGGTGTGTGTTCGCACATGAT
GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
CACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAAATTTT
TTATGCATACCAAAAAAAATACAAGGATCATGTCTACCAAGCTTGGGGCCAAAACACCTTCCAAA
AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGAAACATTGTATGAATTTACAAGCAATAAAAATC
GCATTGGCACACAAAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
GCGCATCCCGTCTCCCTGGCCGACGTAGCGCCCGCCCGCCCACTCGTTTCATCGGTTGACTGAG
Found at i:5226980 original size:26 final size:26
Alignment explanation
Indices: 5226950--5227002 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5226940 GTTGACTTAG
5226950 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5226976 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5227002 G
1 G
5227003 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5227479 original size:896 final size:891
Alignment explanation
Indices: 5226081--5253339 Score: 16299
Period size: 891 Copynumber: 29.9 Consensus size: 891
5226071 GTTGACTTAG
* ** *
5226081 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
5226146 CTCGGGCATGTGTTGGTGTCGCATTTTTCTTTGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CTGGAGCATCGCC-GAGA
* *
5226211 ACCTGACCGGCGGCATTAGGGTTCCGGCGATCGGGGGCGTCGGGGGGGTGTG-GCACATGATGTG
129 ACCTGACCGGCGGCATT-GGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
5226275 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTGAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* ** *
5226340 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTATCAGTAGCCATTAAAGTGTCTAAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
5226405 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * * * *
5226470 TGCATGCCAAAAAAAATACAAGGATCGTGTCTACCAAGCTTGGGGCCCAAACACCTTCCGAAAAA
388 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * *
5226535 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCTTTAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
**
5226600 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGAATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
5226665 TTGGCACACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTCTG
583 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTC-G
* * *
5226730 CATCCCGTCTCCCTGGCCGACGTAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTGAGGCAT
647 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * * *
5226795 ATGGAGTTCATTCCCAGACTAAGATTGGATCAGATCAAGGGTTGCAGCAGTAGGATCAGCAGCAC
712 ACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAGCAGCAGGATCAGCAGCAC
* * * * * * **
5226860 GCAAAGGGGGACCCGATCGATCCCCGACTTGCACATCCCAGCCCTCTGGTCGGCTGAGCGCTGGC
777 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC-GCCCTCTGGCCGGCTGAGCACCCGC
* * *
5226925 ACCCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
841 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
5226976 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGAAAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
5227041 CTCGAGCATGTGCTAGTGCCACATTTTTCTTCGTCAGGGCACCATCACTGGAGCATCACCGAAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CTGGAGCATCGCCG-AGA
** * * * *
5227106 ATATGACCGGCGGCATTAGGGTTTCGACGATCGGGGGGGCCGGGGGGGTTTGCACACATGATGTG
129 ACCTGACCGGCGGCATT-GGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * * *
5227171 CGATTGGTGCTGGTACTTGGGCCTTATATTGGCCCCATATCCCTCATCAAACCTCAAGAACTCAT
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
5227236 GCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
5227301 GGGGACACTTTTTTCAAATGGTCACAAGATCTTGTACAGTTCGAGTTTTTAGCTAAAGTTTTTTT
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTT
** *
5227366 -TGCACACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCGTTCTGAAAA
387 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
** *
5227430 AATTTTAAAAAATCCAAAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
5227495 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
**** * * * * *
5227560 ATTGGCATGTGGAAATATGAAGAAGTGCCTAAACGCACCTACCACCCTATCGAACCAGGGCTTAT
582 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-C
* * * * * *
5227625 GCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCGGCTCGTTTCGTCGATTGGCTTATGTA
646 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * * *
5227690 TACAGAGTTCTTTCCTAGTCTAAGATTGGACCAGACCAAGGGTTACGGCAGCAGGATCGGCAGCA
711 TACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAGCAGCAGGATCAGCAGCA
* * * * * *
5227755 CGCAGAGGGGCACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTTTAGCCGGCTGAGCGCCCG
776 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG-CCCTCTGGCCGGCTGAGCACCCG
* *
5227820 TACGCTCGTTTCAG-GGGTTGACTTAGGCATACGGAGTTCATTCGCAGTCTAA
840 CACGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * ** *
5227872 GCATATGGAGTTCATTTGCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
5227937 CTTGAGCATGTGCTGGAGCCACATTTTTCTTCGCCGGGGCACCAT-C----G--TCG--GAGCAC
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCTGGAGCATCGCCGAGAAC
* * *
5227993 CTGACCAGCGGCATTGGGGTTCAGGCGATC-GGGGGGCCGGGGGGGGTGTGCGCAGATGATGTGC
131 CTGACCGGCGGCATT-GGGTTCCGGCGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGC
*
5228057 -ATAGAGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 GAT-GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
5228120 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5228184 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAATGTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
5228249 TGCATGCTAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGACCAAAACTCCTT-TCGAAAA
388 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAA
* ** *
5228313 AATTTTGAAAAATCCCGAACCGTAAAAAGTTTCAAAAATGGTGAAAAATAGAAAACGAGTCATCT
452 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
5228378 TGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGGATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
5228443 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
582 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-C
* * *
5228508 GTATCCCGTCTCTCTGGCCGACGTAGCGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGA
646 GCATCCCGTCTCTCTGGCCGACGTA--G--TGCCCG--C-CC-GCCCGCTCGTTTCGTCGGTTGG
* * ** * **
5228573 CCTAGGCATACAGAGTTCATTCATAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTGGCAGGAA
703 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAGCAGCAGG-A
* * * ** * * *
5228638 T-GGCAGCACGTAGAGGGGGACCTGGGCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGTT
767 TCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG-CCCTCTGGCCGGCT
* * * * * ** *
5228702 GAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATATGAAGTTCATTTGCAATCTAA
831 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
5228763 ACATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * * * *
5228828 GTCGGGCATGTGTTGGTGGCACATTTTTCTTCGTCGAGGCAACAT-C----G--TCG--GATAAC
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCTGGAGCATCGCCGAGAAC
* * * * * * *
5228884 CTGACCGACGGTATTGGGGTACCGGTGAT--TGGGGGTCGGGGGGGTGTGCGCACATGATGTGGG
131 CTGACCGGCGGCATT-GGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
* * * * *
5228947 ATGGGTGGTGGTACTCGGCCCTTATATTAGCCCCCTATCCCTCATGAAACCTCAAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
5229012 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
5229077 GGCCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTT
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* ** **
5229142 CATGCCAACAAAAATACAAGGATCACGTGAACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
390 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
* * ** *
5229207 TTTAAAAAATCCCGAACCGCAAAACGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGC
455 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * * *
5229272 CATGAAACTTCATGTGAAGGCTTAGGGGACCATTGTATGAATTTAAAAGCCATAAAAAGGGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* ** * *
5229337 GGTATGCGGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
585 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-CGCA
* * * *
5229402 TCCCGTCTTTCTGGCCGGCTTAGTGCCCGCACGCCCGCCCGCCCACTTGTTTCGTCGGTTGGCTT
649 TCCCGTCTCTCTGGCCGACGTAGTG--C-C-CGCCCGCCCG----CTCGTTTCGTCGGTTGG---
* * * * *
5229467 CTTAGGCATACGAAGTTTATTCCCAGTCTAAGATTAGACCGGACTGAGGGTTAC-GACAGCAGGA
703 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAG-CAGCAGGA
* * * * *
5229531 TCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCACTCTAGCCGACT
767 TCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCC-CTCTGGCCGGCT
* * * *
5229596 GAGCGCCCACACGCTCGTTTCGTGGGTTCACTTAGGCATACAGAGTTCATTCCCAG--T--
831 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
5229653 -C-TA---AG---------A-TC--AGATCGGACC-GA--G-GGTTATG-G-TAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT-TGCGACAGCACATGCTGG
* * * * * *
5229695 G-TGCGGGCATGTGCTGGTGCCGTATTTTTATTCATCGGGGCACCATCGTCGGAGCATCACCAGA
65 GCT-CGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCT-GGAGCATCGCC-GA
* * *** * * *
5229759 GAACCTGACCGACGGTATTAGGGTTCTAACGATC-GGGGGGTCGGGGGGGTGTGCGAAAATGATG
127 GAACCTGACCGGCGGCATT-GGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* * *
5229823 TGCGAAGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
5229888 ACAGCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
5229953 ATGGGGACACTTTTTTGAAATGGTCACAAAATCTTATACACATCGAGTTTTTAGCTAAATTGTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
5230018 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-TCAAA
386 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAA
* * * ** *
5230082 AAAATTTTAAGAAATCCCGAACCGCAAAAAATTTTGAAAATCATGAAAAATAGAAAACGAGTCAT
450 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
5230147 TTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* **
5230212 GCACTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
580 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * ** ** *
5230277 GCGCATCCCATCTCTATGGTTGGTGTAGTGCTCGCCCGCCTGCCCGCCCGCTCTTTTCGTCGGTT
645 -CGCATCCCGTCTCTCTGGCCGACGTA--G-T-G--C-CC-GCCCGCCCGCTCGTTTCGTCGGTT
* * ** * * **
5230342 GGCTTAGGCATACGAAGTTCATTCCCACTCTAAGATCGGACCGGACAGAGGGTTGTGGCAGCAGG
701 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAGCAGCAGG
* * * * * * *
5230407 AT-TGACAACACGTAGAGGGGGACCCGATCGATCCCCGGGTTGCGCATCCACCCCCTCT-ACCGT
766 ATCAG-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC-CGCCCTCTGGCCG-
* * *
5230470 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAA
828 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
**** * * ** *
5230534 G-ATCCGACCGGACCGAGGGTTGCGGCAG-C-AAGAT-TGACAACACACAGAGGG-TGCCCGACA
1 GCAT---A-CGGA--GTTCATT-C-CCAGTCTAAGATCGGAC--CGGACCGAGGGTTG--CGACA
* **** ** * * * ***
5230594 GATCCCCGACTCGCACATCTCGCCCCTCTGGCCGACTGAGCAGCCGCA-CGCTCGTTTCGT-GGG
54 G---CAC-A-T-GCTGGGCTCG-AGC-AT-G-TG-CTG-G-TGCCGCATTTTTC--TTCGTCGGG
* * * * * **
5230657 TTGACTTAGGCAT-ATGGAGTTCATTC-CC-AGTCTAAGCAT-A-CGGAGTTCATTCCCAG-TCC
104 --G-C--A-CCATCCTGGAG--CA-TCGCCGAG---AA-CCTGACCGGCG-GCATT--GGGTTCC
*** ** * * * ** * * *** * *
5230716 CAAGATCGGATCGGACC-GAGGGTTACGACAGCACATGCTGGGCTCGGAAATGTGCTGGT--GTC
153 GGCGATCGG-GGGGGCCGGGGGGGTGTG-C-GCACATGATGTG--C-GATGGGTGCTGGTACTTG
** * * * * * * **** ******* *
5230778 GCATTTTTCTTCGTCGGGGCACC-AT-CGTCA-GAGAACCT-GACTGGTGGCATTGGGGTTTCGA
212 GCCCTTAT-AT--T--GGCCCCCTATCCCTCATCA-AACCTCGA--GAACTCACACCCCCTT-AA
* * **** * ******** * * * **
5230839 CGATCGGGGGGGCCGGGGGGGGTGTGC-GCACATGATGTGCGATGT-GTGCTGGTACTTGGCCAT
268 AGAGCATTTGAGATTTTACAGGTTTGCTGC-CA-G-T-AGCCAT-TAAAG-T-GT-C-T-G--A-
** ** * ** ** *** * * **
5230902 TATATTAGCCCCCTATCCCTAATCAAA-CCTCA-AAAA-CTCACACCCCCTTAAAGAGCATTT-G
320 -A-ATGGGGACACT-T---TTTTCAAATGGTCACAAAATCTTGTA--CACTT--CGAGTTTTTAG
* * **** * * * **
5230963 -AGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGA-CACTTTTTTCAA-
375 CTGAATTT-T---TTTG-TG-CA-T-GCCA--AAA-AAAAT-ACA-A-GGATCACGTCTACCAAG
** * * ** *** *** *
5231025 AAT-GGTCATAAAATCTTGTACACTTC-G---AGTTTTTAGCTGAATTTTTTGTGCATGCC-TAA
426 TTTGGGGC-CAAAA-C---T-C-CTTCTGAAAAAATTTTA----AA-AAATCCCG-A-ACCGTAA
** * ** * ** * **** * ** * * ** * * **
5231084 AAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCTTTCTGAAAAAAATTTA--AA
477 AAAGTTTCAAAAATCA--T-GA--AAAATAGAAAACGAGTCGTCTTGC-CATGAAACTTCACGTG
* * * ** * * ** * * ** * *
5231146 AAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCATCTTGCCATGAAACTTCATGTGAAGGCT
536 AAGGCTT----AA--G-GGACCATTG-TATGAATTTA-CAAGCCAT-AAA---AATG-GCA---T
* *** * ** *** ** **** * * *
5231211 TAAGGGAC-CA-TTGTATGATGGCATTGGCATGCAGAAATATGA-AGATGTGCCTAAACCCACCC
584 T--GGCACACAGAAATATGA-AG-A-T-G--TGCCTAAA-CCCACCTACCACCCT--ATCGATCC
* * *
5231273 AC--CTACATGCATCCCGTCTCTTTGGCCGAC-TAGTGCCCGCCCGCCCGCTCGTTTTGTCGGTT
638 ACGGCTTC--GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
** * * ** * * * *
5231335 GGCTTTCGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGTTCGAGGGTTACGGTAGCAAG
701 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAGCAGCAGG
* * * * * * *
5231400 ATCTGCACCATGCAGAGTGGAACTCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGC
766 ATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC-GCCCTCTGGCCGGC
* * * * * *
5231465 TAAACGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAC
830 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
5231527 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACTGGACTGAGGGTTACGACAGCACTTGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
** ** *
5231592 CTCGAGCAACTGCTGGTGATGCATTTTTC-T--T--------CA-CC-GGAGCATCGTCGGAGAA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCTGGAGCATCG-CCGAGAA
** * *
5231644 CCTGACCGGTAGCATTGGGGTTCCGACGAT---------C-AGGGGGTGTGCGCACATGATGTGC
130 CCTGACCGGCGGCATT-GGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* ** * *
5231699 GATGGGTGCTTGTACTTTACCCTTATATTGGCCCCCTAACCCTCATCAAACCTGGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
5231764 CCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* **
5231829 GGGACACTTTTTTAAAATAATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
5231894 GCATGCCAAAAAAAATACAAAGGATCAAGTCTACCAAGTTTGGGGGCCAAAAATCCTTCCGAAAA
389 GCATGCCAAAAAAAATAC-AAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCTGAAAA
* *
5231959 AA-TTT-AAAAATCTCGAACCATAAAAAG-TTCAAAAATCATGAAAAATAGAAAACGAGTCGTC-
452 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
5232020 TGCCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAACAAGCCAGAAAAATG
517 TG-CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT-ACAAGCCATAAAAATG
** *
5232085 GCATTGGCATGCAAAAATATGAAGATGTGCCTAAA-CCACCTA-CACCCTATCGATCCACGGCTT
580 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
5232148 ACGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCTCCGCCGCCACCCGCCCAGCTTGTTTCGTCGG
645 -CGCATCCCGTCTCTCTGGCCGACGTAGTG-----C-CCG---CCCGCCC-GCTCGTTTCGTCGG
* ** * * * *
5232213 TTTGGCTTAAGCATACGGAGTTCATTCGGAATCTAAGATCAGACCAGATCGAGGGTTGCGGCAGC
699 -TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAGCAGC
* ** * * *
5232278 AAGATCAGCAGCACATAGAGGGGGACCC-AGCCAATCCCCGGCTAGCGCATCTCAC-CCCTCTAG
763 AGGATCAGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATC-C-CGCCCTCTGG
** * *
5232341 CTAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGATTTCATTCCCAGTGT
825 CCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
5232406 AA
890 AA
* * * * **
5232408 GCATACGGAGTTCCTTCCCAATCTAAGATCGGACCGGATCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
5232473 CTCGAGCATGTGCTGGTGCCTCATTTCTT-TTCGTCGAGGCATCATCGTCAGAGCATCGCCGAAG
66 CTCGAGCATGTGCTGGTGCCGCATTT-TTCTTCGTCGGGGCACCATCCT-GGAGCATCGCCG-AG
* * * *
5232537 AACCTGACTGGTGGCATTAGGGTTCCGGTGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGT
128 AACCTGACCGGCGGCATT-GGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * *
5232602 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCTTCAAACCTCAAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
5232667 CA-CCCCTTAAAGAGCATTTGA-ATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
5232730 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
5232795 GTGCATGCCAACAAAAATACAAGGATCACGTCTACC-AGTTTGGGGCCAAATCTCCTTCTGCAAA
387 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * * *
5232859 AATTTTAAAAAAATCCTGAACTGTAAAGATGTTT-AAAAATCCATGAAAAATAGAAAATGAGTCG
452 AATTTT-AAAAAATCCCGAACCGTAAA-AAGTTTCAAAAAT-CATGAAAAATAGAAAACGAGTCG
* * *
5232923 TCTTTGCTCATGAAAACTTCACGTGAAGGCTTAAGGGACCATTG--TGAATTGA-AAGCGATGAA
514 TC-TTGC-CATG-AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*** * *
5232985 AATGGCATTGGCATGTTAGATAATATGAAGATGTGCCGTTAACCCACGCTAGCACTCCTAATCGA
576 AATGGCATTGGCA-CACAGA-AATATGAAGATGTGCC-TAAACCCAC-CTACCAC-CCT-ATCGA
* * * *
5233050 CTCCAC-GCTT-GCCATACCCG--TCTCTGTCCG-GGCTAGT--------GTCCGCTCGTGTCGT
635 -TCCACGGCTTCG-CAT-CCCGTCTCTCTGGCCGACG-TAGTGCCCGCCCGCCCGCTCGTTTCGT
* * *
5233102 CGGTTGGCTTAGGCATATCGGAGTTCCATT-CCAGTCCTAAAGATTGGACCGGATCGAGGGTTGC
696 CGGTTGGCTTAGGCATA-CGGAGTT-CATTCCCAGT-CT-AAGATTAGACCAGACCGAGGGTTGC
* * * ** * * *
5233166 GGCAGCAAGGGATCGGTAGCACTTAGA-GGGGACCCGACCGATCCCTGTCTTGCGC-T-CC-CCT
757 AGCAGC-A-GGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
* * * * * * * * *
5233227 TCTGTCTGG-TGAACGCTCGAATGCTCATTT-GTGGGTTTGAC-TA-GCATAGCGGATTTCATTC
820 TCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGG-TTGACTTAGGCATA-CGGAGTTCATTC
5233288 CCGAGTCTAA
883 CC-AGTCTAA
* * * * *
5233298 GCATTACCGGA-TTCATTCCCAGTCTAAGATCGGATCGGATCGAGCG-TGACAACAGCACACGTC
1 GCA-TA-CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG-CGACAGCACATG-C
* ** * * *
5233361 T--GCTCG-GGATCTGTGCTGGTGCCATATTTTTCTTC-AC-TGG-ACCAT-C----G--TAG--
62 TGGGCTCGAGCA--TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCTGGAGCATCGCC
* * * *
5233411 GAGAACCTGACTGGCGGCATTGGGGTTCTGGCGAT-GGAGTGGGCCGGGGGGGATGTGTGCACAT
125 GAGAACCTGACCGGCGGCATT-GGGTTCCGGCGATCGG-GGGGGCCGGGGGGG-TGTGCGCACAT
5233475 GATGT-CTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
187 GATGTGC-GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
5233539 AACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
251 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
5233604 CTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTGGCTGAAT
316 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * ** *
5233669 TTTTTTGTGCATGCCAACAAAAATACAAGGATTATGTCTACCAAGTTTGGGGTGAAAACTCCCTC
381 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * ** *
5233734 CG-AAAAATTTTAAAAAATCCTGAATGGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
446 TGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
5233798 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
511 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* ** *
5233863 AACGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA-CAACCTACCACCCTATCGATCCACG
576 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
5233927 GCTTGCACATCCCATCTCTCTGGCCGACGTAGTCCCCGGCCGCCCGCTCGTTTCGTCGGTTGGCT
641 GCTT-CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * **
5233992 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACAGAGGGTTGTGGCAGCAGGATC
705 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAG-ACCGAGGGTTGCAGCAGCAGGATC
* * * * * *
5234056 GGCAACACGCAGAGGGAGACCC-AGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCAGCTG
769 AGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCG-CCCTCTGGCCGGCTG
*
5234120 AGCACCCGCACGCTCGTTTCCTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
832 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
5234180 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-GGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * * * * * *
5234244 CTTGGGCATGTGTTCGAGCTGCATTTTTCTTCGTCGGGGAACCATCGTCGTAGCATCGGCGAAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCT-GGAGCATCGCCG-AGA
* * * **
5234309 ACCTAACCGGCGGCATTGGGATTCCGACGATGGGGGGGGCCGGCAAGGGTGTGCGCACATGATGT
129 ACCTGACCGGCGGCATTGGG-TTCCGGCGATCGGGGGGGCCGG-GGGGGTGTGCGCACATGATGT
* * * *
5234374 GCGATGGGTGCCGGTACTTGGCCCTTTTATTGGCCCCCTATCTCTCGTCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
5234439 CACCCCCTAAAAGATCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTGAAT
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * * *
5234504 TGAGGACACCTTTTTGAAATGGTCACAAAAGCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
5234569 GCGCATGCCAACAAAAATACAAGGATCATGTCT-CCAACTTTGGGGCCAAAACTCCTTCCGAAAA
387 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * * * * *
5234633 AATTTTAAAAAATCTCGCACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGGGTCGTCT
452 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
5234698 TGCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
5234763 ATTGGCACATAGAAATATGAAAATGTGCCTAAACCCACCTACCATCGTATCGATCCACGACTTGC
582 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-C
* *
5234828 GCATCACGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCATCGGTTGG
646 GCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCG--C--TCGTTTCGTCGGTTGG
* * * *
5234893 CTTAGTCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTG-AGGCAGCAAGA
703 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCA-GCAGCAGGA
* * * * ** * *
5234956 TCAGCAGCATGCAGAGGGGGACCCGGCCGATCCCTGGCCTGCAAAACCCGCCCCACTGGCCGGCT
767 TCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG-CCCTCTGGCCGGCT
* *
5235021 AAGCAACCGCACGCTCGTTTCGTGGG-TGAC-T-----TA--G-G--------CA---T--
831 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
5235059 --ATA--GAGTTCATTGCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * * *
5235120 CTCGGGCATGTGTTCGTGTCGCATTTTTCTTC-ACAGGGGCACCATCGTTGGAGCATCGCAGGAG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATC-CTGGAGCATCGC-CGAG
* * * * *
5235184 AACCTGACCGGCTGCATTGGGGTTCCGGTGATCGGGGGGGCC-GGGGGGTGTTCACAAATGATGT
128 AACCTGACCGGCGGCATT-GGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
5235248 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
5235313 CACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
5235378 TGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
5235443 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCACAACTCCTTCTGAAAG
387 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* ** * *
5235508 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAGAACGAGTCATCT
452 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * *
5235573 TGCCATGAAACTTCGCGTCAAGGCTTAAGGGACGATTGTATGAATTTAAAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
5235638 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGGATCCACGACTTCC
582 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-C
* * * * *
5235703 GCATCCCATCTCTATGGCCGGCGTAGTGCCCACCCACCTGCCCGCCCGCTCTTTTTGTCGGTTGG
646 GCATCCCGTCTCTCTGGCCGACGTAGTG------C-CC-GCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * *
5235768 CCTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGATCGAGGGTTGC-GACAGCAGGA
703 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAG-CAGCAGGA
** * * * * ** *
5235832 TTTGTAGCATGCAGAGGGGGACCCGACCAATCCTCGGCTTGCATATCCTGCCCCTCT-GCCTGGC
767 TCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG-CCCTCTGGCC-GGC
* * *
5235896 TGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAA
830 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * * *
5235958 GCATATGAAGTTCATTCCCAGTCTAAGATTAGACCAGATCAAGGGTTGTGACAGCACATGCGGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
5236023 CTCAAGCATGTGTTGGTGCCGCATTTTTCTTCGCCAGGGCACCAT-C---A-C--CG--GGGAAC
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCTGGAGCATCGCCGAGAAC
* * * *
5236079 CTGACCGGTGGCATTGGTGTTCCGGTGATCGGGTGGGCCGGGGGGGATTGTGTGCACATGATGTG
131 CTGACCGGCGGCATTGG-GTTCCGGCGATCGGGGGGGCCGGGGGGG--TGTGCGCACATGATGTG
** *
5236144 CGACAGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
5236209 ACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5236274 GGGGACACTTTTTTCAAATGGTCACGAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTA
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-
* * * * **
5236339 GTGCATGCCAAAAAAAATACAACGATCATGTCTACTAAGTTTGGGGCCAAAACGCCTTCCAAAAA
387 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
*
5236404 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCT
452 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
5236469 TGCCATGAAACTTCACGTGACGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
5236534 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
582 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-C
* * * * * *
5236599 GCATCCCGTCTCTCTGGTCGGCGTGGTGCCTGCCCGTCCGCCGCCTACTCTTTTGTCGGTTTGGC
646 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C-CCG-CT-C-GTTTCGTCGG-TTGGC
* * * * * * * * *
5236664 TTAAGCATATGGAGTTCATTCCCAGTCT-AGATCAGATC-GACTGAAGGTTACA-TAGTAGGATC
704 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAGCAGCAGGATC
** ** *
5236726 GATAGCAGCAC-C--A-GGGGACCCGGTCGATCCCCGGCTTGCGCATCCAACCACTCTGGTCGGC
769 ---AGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCC-CTCTGGCCGGC
* * * *
5236787 TGAGCACCCGCGCGCTCAATTTCGTCGGTTGACTTAGGCATACAGAGTTCA-TCCCAGTCTAA
830 TGAGCACCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** * *
5236849 GCATACGGAGTTCATTCCCAGTCT-AGATTGGATCGAACAGAGGGTTGCGGTTAGCAGGAT-CGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GACAGCA-CATGCTG
* * * *** * *** * *
5236912 GAGCTCGTAG-AGGAGGACCGGT--CG-ATTCCCACTTCCAATC-TCACCCCTCTGGCCTGCTGA
64 G-GCTCG-AGCATG-TG-CTGGTGCCGCATT-TTTCTT-C-GTCGGGGCACC-AT--CCTG--GA
** * ** * * *****
5236972 GCACTCGCACGCTCAGTTTCGTG---GGTTG-ACTTAGGGATACAGAGTTC-ATTCCCAGTCTAA
117 GCA-TCGC-CG---AG-AACCTGACCGGCGGCA-TT-GGG-TTCCG-G--CGA-T--C-GGGGGG
***** ** * * * * * ** *
5237032 GCATACAGATTCATTCCCAGTCTAAGATCGAACCAGACCGA-GGGTTGCAACAGCACATGCTGGG
166 GCCGGGGGGGT-GTGCGCA--C-ATGAT-G----TG--CGATGGG-TGC--TGGTAC-T--T-GG
* * * ** * * * * ** * * * *****
5237096 CTCGAGCATGTGTTGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA--CATTACCGGGAG
213 C-C---CTTATATTG-GCC-CCCTATCCCTCATC---AAACC-TCG-AGAACTCA-CACCCCCTT
*** * *** * *** * * * * **
5237159 AACCTGAACCGGCGGCATTA-GGGTTTCGCGATCGGGGGTGCTGGAGCGGTTGCGCACAAGATGT
266 AAAGAGCATTTGAGATTTTACAGGTTT-GC--T-----G-CCAGTAGCCATT----A-AAG-TGT
* * ** ** * * ** *
5237223 GTG-AAGGGTGCTGGTACTTGGCCCTT-ATATTGGCCCCCTACCCCTCATCAAATCGCG-AGAAC
316 CTGAAATGG-G--GACACTT---TTTTCA-AATGG-----T----CACA--AAATCTTGTA-CAC
* ***
5237285 -TCGCACCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTA
362 TTCG-A---GTT-TTTAGC---TGA-ATTTT-----TTTG-TG-CA-T-GCCA--AAA------A
* * *** * *
5237349 AAATGGGGACACTTTTTTCAAATGG-TCACAAATCTTGGTACACTTTGAGTTTTTTAGCTGAATA
401 AAAT------A-------C-AA-GGATCAC--GTC----TAC-C---AAG-TTTGGGGC-CAAAA
** ** ** * * ** *
5237413 CTTTTGTGCATCGCCAAAAAA-AATACAAGGATCAC--ATC-TACCAAGTTTGGGGCCAAAACTC
439 CTCCT-T-C-T-G--AAAAAATTTTA-AAAAATCCCGAACCGTAAAAAGTTT-----CAAAAAT-
* * ** * ** * ** *
5237474 CTTTCGAAAAAAATTTTTAAAAAATCCCGAACCG-CAAAAAGTT-TCA--AAAAATCATGAAAAA
491 C-AT-G--AAAAA----TAGAAAA---CGAGTCGTC------TTGCCATGAAACTTCACGTGAAG
* ** * * * * * *
5237535 ACAGAAAACGAGTTG-TC-TTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAAT
539 GC--TTAA-G-G--GACCATTG-TATG-AA-TTTAC---AAGCCATAA--AA--A-TG---GCAT
** * * **** ***
5237598 TTACAAGCCATAAAAATGGCATTGGAATGCA-GAAATATGAAGATGTACCTAAACCCACCACCAC
584 TGGC-A--CACAGAAAT---A-T-GAA-G-ATG-TGCCT-AA-ACCCACCT---------ACCAC
* * *
5237662 CCTAATC-ATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCACCCGCTCGTCTG
627 CCT-ATCGATCCACGGCTT-CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC-C--C-G
* ** ** *
5237726 CTCGTTTCGTCGGTTGGATTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TTGAACTGA
686 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAG-ACCGA
* * ** * * * *
5237790 GGGTTACAGCAGCAAGATTGGTA-CACACAGA--GGGA-CCG-CCGAT-CCCTGCTTACGCATCC
750 GGGTTGCAGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC
*
5237849 C-CCCTCT-GCCGGCT-AGCACCCG-ACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCA
815 CGCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
5237910 TTCCCAGTCTAA
880 TTCCCAGTCTAA
*
5237922 GCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-CG--G---A----C---C---G----GA-C----
* * * * *
5237987 CGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGT--TGCT--CGTATTTTTCTTCATCGGGG
40 CGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* *** ** *
5238048 CACCATCGTCGGAGCATC-CCGAAGAACCTGACCAATGGCATTGGGTTCCGATGATC-GGGGGGT
105 CACCATCCT-GGAGCATCGCCG-AGAACCTGACCGGCGGCATTGGGTTCCGGCGATCGGGGGGGC
* *
5238111 C----GCGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
168 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
5238172 CCCTCATCAAACCTTGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAC
233 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
5238237 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATT
298 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * *
5238302 TCGA-TTTTTTGATGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGCT
363 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
* * ** **
5238366 TGGGGTCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCA
428 TGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
* *
5238431 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTAT
493 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
** * *
5238496 GAATTTACAAGCCATAAAAATACCATTGGCACACAAAAATAT-AGAGATGTGGCTAAACCCACCT
558 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA-AGATGTGCCTAAACCCACCT
* *
5238560 ACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCG
622 ACCACCCTATCGATCCACGGCTT-CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
* * * *
5238625 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTTTAAGTTTGGACCAGACCGAG
686 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAG
* * * * * * * * *
5238690 GGTTACGGTAGCAAGATTAGTAGCACGCAGAGGGAGACCTGACCGATCCTCGGCTTGCGCATCCC
751 GGTTGCAGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* ** * *
5238755 ACCCCTCTGGCTTGCTGAG-AGCCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGAAGTTC
816 -GCCCTCTGGCCGGCTGAGCA-CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG--G---
*
5238819 ATTCCCAGTCTAAGCATGCAGAGTTGATTCCCAGTCTGA
874 ------AG--T-----T-C-------ATTCCCAGTCTAA
* * ** *
5238858 GCATACGGAGTTGATTCCCAGTCTAAGATTGGACCAAACCGAGTGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
5238923 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCT-GGAGCATCGCC-GAGA
5238988 ACCTGACCGGCGGCATTGGGGTTCCGGCGAT-GGGGGGGCCGAGGGGGTGTGTGCGCACATGATG
129 ACCTGACCGGCGGCATT-GGGTTCCGGCGATCGGGGGGGCCG-GGGGG-GTGTGCGCACATGATG
* * * * * *
5239052 TGTGATGGGTGCTAGTACTTGGCCCTTATATTAGCCCCTTATACCTCATCAAATCTCGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
5239117 ACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
5239182 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
5239247 TTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTGGGGCCAAAACTCATTCCGAAA
386 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * * * *
5239311 AAAATTAAAAAAATGCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTC
451 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * *
5239376 TTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATAGTACGATTTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
5239441 CATTGGCGCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACAGTTTG
581 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-
* * ** * *
5239506 TGCATCCAGTCTCTCTGGCCGGTGTAGTGCTCGCCCGCCCACCTGCTCGTTTCGTCGATTGGCTT
645 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C-CC-GCTCGTTTCGTCGGTTGGCTT
* *
5239571 AGGCATACGGAGTTCATTCCCAGTCTAAGGTTAGACCAGACCGAGGGTTGCAGCAGGAGGATCAG
706 AGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAGCAGCAGGATCAG
* * *
5239636 CAGCACGTAGAGGGGGACCCGACCGATCCCCCGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC
771 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG-CCCTCTGGCCGGCTGAGC
** * * *
5239701 ACCCGCACGCTCGTTTCGTGCTTTAACTTAGACATGCGGAGTTCATTCCCAGTCTAA
835 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * *
5239758 GGATACGGAGTTCATTCCCAGTCTAAGATCAGACTTGATCGAGTGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* *
5239823 CTCGAGCATGTGTTGATGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGCCGAAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CTGGAGCATCGCCG-AGA
* * ** *
5239888 ACCTGACCGACGGCATTGGGGTTCAGGCGATCGAAGGGGCCAGGGGGGGTGTGCCCACATGATGT
129 ACCTGACCGGCGGCATT-GGGTTCCGGCGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGT
* * *
5239953 GTGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
5240018 CACCCCCTTAAAAAGCATTTCAGATTTTACAGGGTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
5240083 TGGGGACACTTTTTTCAAATGGTCACAACATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * * * *
5240148 GTGCACACCAAAAAAAATACAACGATCACGTCTTCCAAGTTTGGGGCCAAAACCCCTTTTGAAAA
387 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * * *
5240213 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTCT
452 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
5240278 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
5240343 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTA-CGATCCAAC-GCTGC
582 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC-ACGGCTTC
* * ** * ** ** * *
5240406 ACGT-CC-T-TCGAGTGGCCGATGTAGTTAGCAACGTGACGCAGTGCTTGCTCGTTTCATTGG-T
646 GCATCCCGTCTC-TCTGGCCGACGTAG-T-GC--C----CGC-CCGCCCGCTCGTTTCGTCGGTT
* ** ** ** * * * *
5240467 GGTTTAGGCAT-TTGAGTTCATTTTCAGTCTATAGGATTCAGA-TTGAACGAGGTTGTGTAGGCG
701 GGCTTAGGCATACGGAGTTCATTCCCAGTCTA-A-GATT-AGACCAGACCGAGGGT-TGCA-GCA
* * * * *
5240530 GTCAGGAT--GCAGCACGTTAGAGGTGGACAGCGA-CGAT--CCTG-TTGTGCAAT-CCG-CCTC
761 G-CAGGATCAGCAGCACG-CAGAGGGGGAC-CCGACCGATCCCCGGCTTGCGC-ATCCCGCCCTC
* * * *
5240587 TGG--GGAATGAGCACCCGCACGCTTGTTTTGTGCGTTGAC-TAGGCATACGGAGTTCATTCCCA
822 TGGCCGG-CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
5240649 GTCTAA
886 GTCTAA
* * ** * *
5240655 GTATACGAAGTTCAATTCCACA-TCTAAGATCGGACTAG-CCGAGGGTTACGATAGCAC-TGCTG
1 GCATACGGAGTTC-ATTCC-CAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTG
* *
5240717 GGCTCGAGCATGTGTTGGTGCCGGGTAATTTTTCTTCCGTCGGGG---CAT-C----G--T---C
64 GGCTCGAGCATGTGCTGGTGCC--G-CATTTTTCTT-CGTCGGGGCACCATCCTGGAGCATCGCC
* * ** ** *
5240769 GAGAACCTGACCGACGGCATTGGGGTTCTGATGATCGAAGGGGCAGGGTGGGGGTGTGCGCACAT
125 GAGAACCTGACCGGCGGCATT-GGGTTCCGGCGATCGGGGGGGC-CGG-GGGGGTGTGCGCACAT
* * **
5240834 GATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAATGTCGAGA
187 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
5240899 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGGCATTAAAGTGTC
252 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * *
5240964 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCAAGTTTCTAGCTAAATT
317 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * * * *
5241029 TTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTTGGGCTAAAAATCCTT-T
382 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT
* * * * * *
5241093 CAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAAGGAG
447 -GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
5241158 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
511 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * *
5241223 AATGGCATTGGCACATAGAAATATGAAGATGTGGCTAAACGCACCTACCACCCTATCGATACACG
576 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * * *
5241288 GCTTGTGCATCCCGTCTTTCTGGCCGATGTAGTGCCCGCCCGCCCACTCATTTCGTTGGTTGGCA
641 GCTT-CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * ** * *
5241353 TAGGCATACGGAGTTCATTCCCAATTTAAGATCGGACCGGACCGAGGGTTGC-GATAGCAGGATC
705 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAG-CAGCAGGATC
* * * * ** *
5241417 GGTAGCACACAGAGGGGGACCC-ACCGATCCCCGACTTGCATATCCCGCCCCTCTGGTCGGCTGA
769 AGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG-CCCTCTGGCCGGCTGA
* * *
5241481 GCACTCGCACGCTCGTTTCATGGGTCGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
833 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
5241540 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
5241605 CTCG-GGATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCACCGGGGCATCACCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CTGGAGCATCGCC-GAGA
** * *
5241669 ACCTGATAGGCGGCATTAGGGTTCTGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
129 ACCTGACCGGCGGCATT-GGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
5241733 CGATGGGTGCTGGTA-------C-----TTGGCCCCCTATCCCTCATCAAACCTCAAGAAGTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
5241786 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5241851 GGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCTGAATTTTTTGG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
5241916 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTT-TCGAAAA
388 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAA
* ** * *
5241980 ATTTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATATAAAACGAGTCGTCT
452 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
5242045 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
5242110 ACTGGCAC-CTAGAAATATGAAGATGT-CTTTAAACCCACCTACCACCCTATTGATCCACGGCTT
582 ATTGGCACAC-AGAAATATGAAGATGTGC-CTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
5242173 GCACATCCTGTCTCTCTAGCCGATGTAGTGCCCGCCCGTCTGCCCGGCCGCTCGTTTCGTCGGTT
645 -CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CC--C-G--C--CCGCTCGTTTCGTCGGTT
* * * *
5242238 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCGAACC-GAACCAAGGGTTGCAACAGTA
701 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAG-ACCAG-ACCGAGGGTTGCAGCAGCA
* ** * *
5242301 GGATCGGCAGCACGTGGAGGGGGACCCGACTGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCG
764 GGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG-CCCTCTGGCCG
* * * * *
5242366 GCTAAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATGCAGAGTACATTCCCAGTCTAA
828 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
5242430 GCATACGGAGTTCATTCCCAATCTAGGATTGGACCGGACCGAGAGTTGTGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * * *
5242495 CTCGGGCATGTGTTGGTGTCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CTGGAGCATCG-CCGAGA
* * * * * *
5242560 ACCTGATCGACGGCATTGGGGTT-CGGCGATCGAGAGGGTC-GGGGGGTGTG-ACACATGATGTG
129 ACCTGACCGGCGGCATT-GGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
5242622 CAATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTTGAGAACTTAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
5242687 ACCCCCTAAAAGACCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAACTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
5242752 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
5242817 TGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCGTCTGAAAAA
388 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
*
5242882 ATTTAAAAAAATCCCGAACC-TCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
453 ATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
5242946 TGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * *
5243011 ATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGT
582 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-C
* *
5243076 GCATCCCGTCCCTCTGGCCGGCGTAGTGCCCGCCAGCCCGCCCGCTCACCCACTCGTTTCGTCGG
646 GCATCCCGTCTCTCTGGCCGACGTAGTG--C-CC-GCCCGCCCG--------CTCGTTTCGTCGG
* * * * * * *
5243141 TTGGCTTAGGCATATGGAGTTTATTACCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCA
699 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAGCAGCA
* *
5243206 GGATC-GACAGCACGCAGATGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCC
764 GGATCAG-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG-CCCTCTGGCC
* *
5243270 GACTGAGCACCCGCACGCTCATTTCGTGGGTTGAC-T-----T----AG----------G-CT--
827 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
5243312 ---TACGGAGTTCATTCCCCGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * * *
5243374 CTCGGGCATGTGTTGGTGTCGCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCACCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CTGGAGCATCGCC-GAGA
* * *
5243439 ACCTGACCGACGGCATTGAGGTTCCGGCGAT-TGGGGGGCCGGGGGGGTGTGTGCACATGATGTG
129 ACCTGACCGGCGGCATTG-GGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
5243503 CGATGGGTGCTGGTACTTGGCCCTTATATT-G-CCCCTATCCCTCATCAAACCTCGACAACTCAG
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
5243566 AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
5243631 GGGGACACATTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
**
5243696 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT--GGCCAAAACTCCTTCCAAAAAA
388 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * *
5243759 ATTTCAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAAAGAAAATGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
5243824 GCCATGAAACTTCACGTGAAAGCTTAAGGGACCATCGTATGAATTGACAAGCCATAAAAATGGTA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *** ** *
5243889 TTGGCACACAGAAACATGAAGATGTACCTAAACCCACCTACATGAAGATGTACCTAAACCCACGG
583 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC---CA-CCCTA--TCGATCCACGG
* * * * * * ** ** *** * *
5243954 -TTGCGGCAGCACAT-GCT-TGGCTCG-GGCATGTG-TTG-GTGCCATAT-TTTTCTTCACCGGG
642 CTT-C-GCATCCCGTCTCTCTGGC-CGACGTA-GTGCCCGCCCGCCCGCTCGTTTCGT---C--G
* * ** * * ** * * * * ** * *
5244012 GCACCATCGCCGAAGCATCGTCGGAGAACCTGACCGACGGCATTGGTGTTCAGA-C-GATCG-GG
698 G----TTGGCTTAGGCAT--ACGGAGTTCAT-TCCCA-GTC-TAAG-ATT-AGACCAGACCGAGG
** * ** * * * ** * * ***
5244074 GGGGCCGGGGGGAGTG-TGC-GCA-CATGATGTGAGATGGGTGCTGGTACTTGGCCCTTAT-ATT
752 GTTG-CAGCAGCAG-GAT-CAGCAGC---ACG-CAGA--GG-G--GG-AC-CCGACC-GATCCCC
* * * *** * * * ** * * **
5244135 GGCCTT-C-TATCCC-TCATCAAACCTCGAGAACTCA-CACCCCCTTAAAGAGCATTT-GAGATT
802 GG-CTTGCGCATCCCGCCCTC-TGGC-CG-G--CTGAGCACCCGC---ACGCTCGTTTCGTGGGT
* ** * * * **
5244195 TTAC--AGGTTTGCTGCCAGTAGCCATT-AAAGTGTCTAA
858 TGACTTAGGCATAC-G-GAGT--TCATTCCCA--GTCTAA
* ** * ** ** * * * ** ** * *
5244232 -AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA-C--ACTTCGAGTTTTTAG-CTGAA
1 GCATACGG--AGTTCATTCCCA--GTC-TAAGATC--GGACCGGAC--CGAGGGTTGCGACAGCA
* ** * * * **** * * * ** * * **
5244292 TATTTTTGTGCATGCCAACAAAAAAACAAGGAT--CACATCTACCAAGTTTGT--GGCCAAAAAT
57 CA-TGCTGGGC-T-CGAGC--ATGTGC-TGG-TGCCGCATTTTTC---TTCGTCGGGGC-ACCAT
* * ***** * ** ***** ** ** * ***** **
5244353 CCTTTCGAAAGAATTTTAAAAAATCCCAAACCGTAAAAAGTGTGGAAAATCATG-AAAAATAGAA
111 CC--T-G-GAGCATCGCCGAGAA--CCTGACCGGCGGCA-T-TGG--GTTCCGGCGATCGGGGGG
** * ** * * ** * * *
5244417 AAC-GAGTCGTCT-TGC-CATGAAACTTC-AT--GT-CAAGG--CTTAAGGGACCATTGTATGAA
166 GCCGGGGGGGTGTGCGCACATG-ATGTGCGATGGGTGC-TGGTACTT---GG-CC-CT-TAT--A
** * * ** * * ** * * *
5244473 TTTACAAGCCATAAAAATGGCGTTGGCATGCAGAA-ATATGAAGATGTGGCTAAATGCACC-T-A
221 TTGGC--CCCCT----AT--CCCT--CAT-CA-AACCT-CG-AGAACT--C-ACA-CCCCCTTAA
** * * * * * * * ** **** ** ***
5244535 CCACCATAT-CGA--TCA-ATGGCTTGCGTATCCCGTCTCTC-TGGCCG-GT-TG-AGCGCCCAC
268 AGAGCATTTGAGATTTTACA-GGTTTGC-T-GCCAGTAGC-CATTAAAGTGTCTGAAATGGGGAC
* * * ** ** * * * * * *
5244592 ACGCTTGTTTC--GTGGGTTGACTTAGGCATACGGAGTTCA-TTCCTAG-TCTAAGCATACGGAG
329 A--CTTTTTTCAAAT-GG-TCAC--A-AAAT-C-TTGTACACTT-CGAGTTTTTAGC-T--GAAT
** ** * ** * * * * * *
5244653 TTCATT-CCCA-GTCTAAGAATGGACCAGACCGAGGGTTACGGC-AGCACATGCTAGGTTGGGG-
381 TTTTTTGTGCATG-CCAA-AA---AAAATA-CAAGGATCACGTCTA-C-CA----AGTTTGGGGC
** * * **** ***** ** * *** ** *
5244714 C--ATGT-GTTGGTG-TCGTATTTTTCTTCATCGGGGCACCATTGT-CGGAGCATCGCCAGAGAA
434 CAAAACTCCTT-CTGAAAAAATTTTAAAAAATC-CCGAACC---GTAAAAAG--T-TTCA-AAAA
* *** * * ** * * ** * * ** **
5244774 -CCTGACTGA-CGATATTG-G-GGT-TCTGACGATCGGGGGGAC--CAGGGGGTGTGCGCACATG
490 TCATGAAAAATAGAAAACGAGTCGTCT-TG-CCAT----GAAACTTCACGTGAAG-GCTTA-A-G
* ** * * ** * * * * ** ** * * * ** *
5244832 ATGTG-CGA-TGGGTG-CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAA
546 --G-GACCATTGTATGAAT-TTAC-AAGCCATAAAAATGG--CATTGGCACACA-GAAATATGAA
** * * * ** * * * * ** *
5244894 GAACT--C-ACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAA
603 GATGTGCCTAAACCCACCT-ACCACCCTAT-CGA-TCCAC-GGCTT-C-G-CA-T--CC------
** * * ** * ** ** * **** * *
5244956 CTGTCTCAAATGG-GGTCACTTTTTTCAAATGGTCACAAAATC-TTGTACACTTCGAGTT--TTT
652 C-GTCTC-TCTGGCCG--ACGTAGTGC--CCGCCCGCCCGCTCGTT-T---CGTCG-GTTGGCTT
* ***** * * * * * **
5245017 AGCTCAATATTTTTTTGCATGCCAACAAAAATAC-AAGGATCACATCC--ACC-A-AGTATGGGG
706 AG-GC-ATACGGAGTT-CATTCC--C---AGT-CTAA-GATTAGA-CCAGACCGAGGGT-TGCAG
** ** ** * ***** **** * * * *** *
5245077 C--CAAAAATC--CTTC-CAAAAAAATTTTAAAAAATCCCGAACCGCGGAAAGTTTTGAAAATCA
759 CAGC-AGGATCAGCAGCAC-GCAGAGGGGGACCCGA--CCGATCC-CCG---G-CTTGCGCATCC
* *** * * * * * ** * * *
5245137 TGAAAAATGGAAAATGAGTCGTCTTGCCATGAAACTTCACG-TGAAGGCTTAATGGAATGTTGTA
815 CG--CCCT-----CTG-GCCGGC-TG--A-GCACCCGCACGCT---CG-TT--TCG--TG-GGT-
* * ** * * * *
5245201 TGAATTTACAAGCCATA-AAAATGGCATTGGCAAG-C--A
858 TG-ACTT---AGGCATACGGAGT-TCATT-CCCAGTCTAA
* * * ** * ** * ** * * * *
5245237 GAAATATGAAGATGTGACTAAACCCA-CCTACCACCCTATC-GATCC-ACGGCTTGC-ACATCCC
1 G-CATACG--GA-GT-TC-ATTCCCAGTCTAAGATCGGACCGGA-CCGA-GGGTTGCGACAGCAC
* ** * * * ** * * *
5245298 GT-CT-CTCTGGCAGGCGTAGTGCCCGCCCGCCCGC--TTGT-TTCGTCGGTTGGCCTAGGCATA
58 ATGCTGGGCTCG-A-GCAT-GTG-CTG-GTG-CCGCATTTTTCTTCGTCGG--GG-C-A-CCATC
* * * * ** * ** * **** *
5245358 C-GGAGTTCATTC-CCTGTCTA-AGATCAGATCGAACTGAGGGTTGTGTAGCAG-GATCAACAGC
112 CTGGAG--CA-TCGCC-G---AGA-ACCTGACCG-GC-G-GCATTGGGTTCCGGCGATCGGGGGG
* * * * * ** *** * * *** * * *
5245419 ACGCAGAGGGG-G-ACCCAGTTGATCCCCGACTTGTGTATCCCT-CCCCTCTGGCCGCTGAGCAC
166 GC-CGGGGGGGTGTGCGCACATGATGTGCGA--TG-G-GT-GCTGGTACT-TGGCC-CTTA-TAT
** * *** * **** * ** ** * *
5245481 CCGCACGCTCGTTTAATGGGTTGACTTTGGCATACG-GAGTTCATTCCCCATCT--A-AGCATAT
222 TGGC-C-C-C--CT-AT-CCCTCA-TCAAACCT-CGAGAACTCACACCCCCT-TAAAGAGCATTT
* * * * ** * *
5245542 G-GAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTTA
277 GAGA-TT--TT-ACAGGT-T----T--G--CTG-CC-A--G-T-AGCCATTA-AAG-T-GTC-T-
** ** ** * ** ** *
5245605 GGCATGTGCTGGTGTGACTTTTTTCTTCATCGGGGCACCATCA-CCAG-AGCATCGTCAGAGAAC
318 -G-AAATG--GG-GACACTTTTTTC-AAAT--GGTCA-CAAAATCTTGTA-CA-CTTC-GAG---
* * * * * * * * ** ** *
5245668 CTGTCTGGCGGCATTGGGGTTCTGGCGTTCGGGGGGGCCGGGGGGGTGTTCGCACATGATGTGCG
368 -TTTTTAGCTGAATT----TT-T----TT-----GTG-C------ATG--C-CAAAAAAAATAC-
* * ** * * * *** * ** * *
5245733 ATGGGTGCTGGTACTTGGCCCTTA-TATT-GGCCCCCTA-TCC--CTCATCAAACTTCAAGAACC
407 AAGGAT-CACGT-C-T--ACC-AAGT-TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA-AA--
* * * * * ** * ** *
5245793 CACTCCC---CCTTAAAGAGCATTTGAGATTTACAGGTTTACTACCATAGCCATTAA--AGT-GT
462 -AATCCCGAACCGTAAAAAG--TTTCAAAAAT-CA---TGA--AAAATAG--A-AAACGAGTCGT
** * * * ** * *
5245852 C-TGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGAA--CACTTCGAGTTTTTAGTTG
515 CTTGCCAT---GAAAC----TTC--A-CGT---GAAGGCTT-AAGGGAC--C-A--TTGTA--TG
* * * * ** ** * * *
5245914 AATTTTTTTGTGCATGCCAAGAAAAAT---ATAAGG-ATCAC-G-TTTACCAAGTTTGGGGCCAA
559 AA-----TT-TACAAGCC-ATAAAAATGGCAT-TGGCA-CACAGAAATATGAAG-AT-GTGCCTA
** ** *** *** *** **** * **
5245973 AACTCCTTCTGAAAAAATTTTAAAAAATCC-CAAATT-GCAAAAAGTTTCAAAAATCAT-G-AAA
613 AAC-CCACCT---ACCACCCT-ATCGATCCACGGCTTCGCATCCCGTCTC-----TC-TGGCCGA
** **** ** ** * * ** * * *
5246034 AATAGAAAACGAGTCGTCTTGC-CATGAAACTTC-ACGTGAAGGCTTAACGGACCAT-TGTA-TG
667 CGTAGTGCCCG-CCCG-CCCGCTC--G---TTTCGTCG-GTTGGCTT-A-GG--CATACGGAGTT
* * * * * * * * ** * * ** * * *
5246095 AATTTACAAGCCATAAAAAT-G-GCATTGGCACGTAGAAATATGAAG-ATG-TGCCTAAAC-CCA
720 CA-TTCCCAGTC-TAAGATTAGACCA--GAC-CG-AG-GGT-TGCAGCA-GCAGGATCAGCAGCA
* ** * * * *
5246155 C-C-TA---CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG-TGTAGTGCCC
776 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG-CCCTCTGGCCGGCTG-A------
* * * * *
5246214 GCCTGTCCGTCCGCCCATCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGT
833 G-C---AC--CCG--CA--CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
5246279 CTACGA
888 CTA--A
* * ** ** * * * *
5246285 TCGGATCAGACTGAGGGTTACGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCTATCCA
1 ---G--CATAC-G-GAGTT-CATTCCCA-G-TCTA-AG-A-TC------GGA-CCG---GA-CCG
* * ** * * * *
5246350 ACGGTTACGGTAGCACATGCTGGCCTCAAGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCA
42 AGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* *
5246415 CCATCGTAGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC
107 CCATCCT-GGAGCATCGC-CGAGAACCTGACCGGCGGCATT-GGGTTCCGGCGATCGGGGGGGCC
* * * * * *
5246480 -GAGGGGTGTGCACACATGATATGTGATGGGTGCTGGAATTTGGCCCTTATATTGGCCCCCTATC
169 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
5246544 ACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
234 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
5246609 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTT
299 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
5246674 CGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
364 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* * ** * * * *
5246739 GGAGCCAAAAATAATTCTGAAAAAATTTTAAAAAATCTCAAACCGCAAAAA-TCTCAAAAATCAT
429 GGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
* * * * *
5246803 GAAAAATAAAAAATGAGTCATCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTCTATG
494 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
**
5246868 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
559 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * *
5246933 CACCCTATCGATCCAAGGCTTGCGCTTCCCGTCTCTCTAGCTGGCGTAATGCTCGCTCGCCCGCC
624 CACCCTATCGATCCACGGCTT-CGCATCCCGTCTCTCT-G--GCCG--ACG-TAG-T-GCCCGCC
* * *
5246998 TGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATT-GTACCA
680 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAG-ACCA
** * ** * *
5247062 GACCGAGGGTTGTGGCAGCAAGATCAATAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGT
744 GACCGAGGGTTGCAGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
** * ** * ** ** **
5247127 GCATCCCGCCC-CTCGATCGGCTGAGCGCTTGTACGCTCGTTTTATGGGTTGACCGAGGCATATA
809 GCATCCCGCCCTCT-GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
5247191 GAGTTCATTCCCAGTCTAA
873 GAGTTCATTCCCAGTCTAA
* * * *
5247210 GCATACGGAGTTCATTCCCAGTCTAAAATCAGACCGGACCAAGGGTTGC-AGCAACACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCACATGCTGG
** * *
5247274 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAG
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CTGGAGCATCGCC-GAG
* ** * * * *
5247339 AACCTGACCTTG-GGTTTTGGGGTTCCGACGATCGGGGAGGCCGGGGGGGTGTGCGTACAGGATG
128 AACCTGACC-GGCGGCATT-GGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* ** *
5247403 CGCGATGGGTGCTGGTACTTGGTGCTTATATTGGCCCCCTATCCCTCAGCAAACCTCGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
5247468 ACACCCCCTTAAAAAGCGTTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
5247533 ATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * ** *
5247598 TGTGCATGCCAACAAAAATACAAAGATCACGTCTACCAAGTTTGGAGCCAAAAATAGTTTTGAAA
386 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * * * *
5247663 TAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATAATGAAAAATAGAAAATGAGTCATC
451 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
5247728 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGC
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
5247793 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACAGCTTG
581 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-
**
5247858 CGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCTGCACTCACGCTCGTTCCGTCG
645 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C-CC-G--CT--CG-T--TT-CGTCG
** *
5247923 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TAGGACCAGACCGAGGGTTGGGGTAG
698 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTA-GACCAGACCGAGGGTTGCAGCAG
* * * ** ** * *
5247987 TAGGAT-TGACAGCATGCAGAGGGGGTGCCGATAGATCCCCCGCTTGCGCAACCTAC-CCCTCTG
762 CAGGATCAG-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC--CGCCCTCTG
* ** * * * * *
5248050 GTCGGCTGAGTGCCCGCACGCTTGTTTCATGGGTTGACTTAGGAATACAGAGTTCATTCCCATTC
824 GCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
5248115 TAA
889 TAA
* * * * *
5248118 GCATACGGAATTTATTCCCAGTC-AAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
5248182 CTCGGGCTTGTGATGGTGCCGCATTTTTCTTCG-CTGGGGCACCATCGTCGGAGCATTGCCGGAG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCCT-GGAGCATCGCC-GAG
* * * * * **
5248246 AACCTGACCGACGACATATTGGTTCCGACGATTGGGGGGTTC-GGGGGGTGTGCGCACATGATGT
128 AACCTGACCGGCGGCAT-TGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
5248310 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAACCCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
5248375 CACCCCCTTAAAAACCATTTGAGATTTTATAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* **
5248440 TGGGGACAC-TTTTTCAAATGGTCACAAGATCTTGTACACTTCGAGTTTTTAGCAAAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
5248504 GTGCATTCCAACAAAAATACAAGGATCACGTCTACCACGTTTGGGGCC-AAACTCCATCCGAAAA
387 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * * *
5248568 AATTTTAAAAAATCTCGAATCC-CAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTTGTC
452 AATTTTAAAAAATCCCGAA-CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
5248632 TTGCCATGAAACTTCACCTGAAGGTTTAAGGGACCACTGTATGAATTTACAAGCCAT-AAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** *
5248696 CATTGGCACGTAG-AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTA
581 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-
** * * * *
5248760 CGCATCTAGTCTCTCAGGCCGGCATAGTGCCCGCCCTCCCGCCCTCTCGTTTCGTCGGTTGGCTT
645 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG----CCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
5248825 AGGCATACAGAGTTCATTCCCAGTTTAAGATCAGACCGGACCGAAGGTTGCGGCAGCAGGATC-G
706 AGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAGCAGCAGGATCAG
* * *
5248889 --GTA-GC--------ATCC-A--GATCCCTGGCTTGCGCATCCCGCCCTTCTGGCCGGCTGAGC
771 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC-TCTGGCCGGCTGAGC
* * * * *
5248940 ACCCACACACTCATTTCATGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTAA
835 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
5248997 GCATACGGAGTTCATTCCCAGTC-AAGAGCAGACCAGACCGAGGGTTGC-AGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCACATGCTGG
* * * * * * *
5249060 GCTCG-GTCTTGTGATGGTGCGGCATTTTTCTTC-ACTAGGGCACCATCGTCGGAGCATTGCCGG
65 GCTCGAG-CATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCCT-GGAGCATCGCC-G
* * * * ** *
5249123 AGAACCTAACCGACGGTATTTTGGTTCCGATGATCGGAGGGGCCGGGGGGGTGTGCGCACATGAT
126 AGAACCTGACCGGCGGCA-TTGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
* ** *
5249188 GTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCCGTCCCTCATCAAACCTCGAGAAAT
190 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
5249253 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCCTTAAAGTGTTTGG
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
5249318 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGATCAATTTTT
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * **
5249383 TTGTGCATGCCAAAAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCAAA
385 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* ** * ** *
5249448 AAAATTTTAAAAATTCCCGAACCACAAAAATTTTCAAAAATGGTGAAAAATAGAAAACGAGTTGT
450 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
5249513 CTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** *
5249578 GCATTGGCATGCAGAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
580 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
5249643 GCGCATCCCGTCTCTCTGACCGTCGTAGTGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGG
645 -CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * *
5249708 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGCAACAGCAGGATC-GATA
709 CATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAGCAGCAGGATCAG-CA
* * * * * ** * * * *
5249772 GCATGCAGAGGGGGACCCAACTGATCCTCAGCTAACGCATCCTGCCCCTCTGGCCGACTGAACGC
773 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG-CCCTCTGGCCGGCTGAGCAC
* * *
5249837 CCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAA
837 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * * * *
5249892 GCATACGGAGTTCATTGCCAGACTATGATCAAACCGGACCGAGGGTTACGGCTGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * * * * * **
5249957 CTCGGGCTTGTGCTAGTGTCGCATTTTTCTTTGTCGGGGTATCATCGTCGAAGCATCGTTGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCT-GGAGCATCG-CCGAGA
* *
5250022 ACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCC--------GTGCGCAGATGATGTG
129 ACCTGACCGGCGGCATT-GGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
5250079 CGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
5250144 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
5250209 GGGGGCACTTTTTCCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
5250274 TGCATGCCAACAAAATTACAAGGATCACGTCTACCAAGTTTGGGACCAAAACT-CTTTTCAAAAA
388 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAA
* * * * * *
5250338 AATTTTAAAAAATCCTGAACTGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTAGTCT
452 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
5250403 TGCCATGAAACTTCACGTGAAGGCTTAAGAGG-GCATTGTATGAATTTACAAGCCATAAAAATGG
517 TGCCATGAAACTTCACGTGAAGGCTTAAG-GGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * ** *
5250467 CATTGGCACGTAGAAATGTGAAGCTGTGCCTAAACCCACCTACCACCCTATCGATAAACAGCTTG
581 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-
** *
5250532 CGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTCCGCCCTCCCACTCGTTTCGTCGGTTG
645 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C--CCG----CCCGCTCGTTTCGTCGGTTG
* * *
5250597 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGTGTT--ATGACAGCAG
702 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCA-G-CAGCAG
* * * ** * * * *
5250660 GATCGGCAGCACGCAGAGCGGGACCCGACGGATCCCCGATTTGTGCATCCGGCCCCTTTGGTCGG
765 GATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG-CCCTCTGGCCGG
* * *
5250725 CTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAATCTAA
829 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
5250787 GCATACGGAGTTCATTCCCTGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
5250852 CTC-AGGCATGTTCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGTCGGAG
66 CTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CTGGAGCATCG-CCGAG
* * * * ** **
5250916 AACCCGACCGGTGGTATTGGGGCTCCGATGATCGGGAAGGCCGGGGGGGGTGTGCGCACATGATG
128 AACCTGACCGGCGGCATT-GGGTTCCGGCGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATG
* * *
5250981 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCGATCCCTTATCGAACCTCGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
5251045 ACACTCCCTTAAAAAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
5251110 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTCAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
5251175 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGG-AAAAACTCCTTCAGAA
386 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCTGAA
* ** * ** *
5251239 AAAATTTTAAAAAATCCCTAACCACAAAAATTTTTGAAAATCATGAAAAATAGAAAACAAGTCGT
450 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
5251304 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTGCAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
5251369 GAATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
580 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
5251434 GCGCATCCCGTCCCTCTGGCCGATGAAGT----GCCCGCCCGCTCGTTTCGTCGGCTGGCTTAGG
645 -CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * *
5251495 CATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTGTAGTAGCAGGATC-GATA
709 CATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAGCAGCAGGATCAG-CA
** * *** * * *
5251559 GCACATAAAGGGGGACCCGGTGGATCCCCGGCTTGCGCATCCCGCCCCACTGGCCGGTTGAGCGC
773 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG-CCCTCTGGCCGGCTGAGCAC
* *
5251624 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
837 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * **
5251679 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGAATGAGGGTTGCGACAGTACATGCTACG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
5251744 CTC-AGGCATGTGCTGGTGCCACATTTTTCTTC-ACTGGGGCAGCATCGTCGGAGCATCGTCGGA
66 CTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCCT-GGAGCATCG-CCGA
* * * * **
5251807 GAATCTGACCGACGGTATTGGGGTTCCGGCGGTC-GGGGGGCCAAGGGGGTGTGCGCACATGATG
127 GAACCTGACCGGCGGCATT-GGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* * * *
5251871 TGCGATGTGTGCTGGAACTGGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
5251936 ACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
5252001 ATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
5252066 TGTGCATGCCAAACAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT-TCGAA
386 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAA
* ** * * * *
5252130 AAAATTTTCAAAAATCCCGAACTATAAAAAGTGTCAAAAATCGTGAAAAATAGGAAACGA-TTGT
450 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
5252194 CTTGCCATGACACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTCCAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** ** * * * *
5252259 GCATTGGCATGCAGAAATATGAAGATGCACTTAAACCCACCTACCACCGTATCGGTGCACGGCTT
580 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* ** * *
5252324 GCGCATCCCGTCTCTCTGG-C--C----TGCCCGTCTACCCGCTCGTTTCGTCGGTTTGCTAAGG
645 -CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
** * * *
5252382 CATAC-GAGTTCATTCCCAGTCTAAGATCT-GACTGGATCGAGGGTTAC-GATAGCAGGATC-GA
709 CATACGGAGTTCATTCCCAGTCTAAGAT-TAGACCAGACCGAGGGTTGCAG-CAGCAGGATCAG-
* * * * * * *
5252443 AAGCATGCAGAGGGGGACTCGGCCGATCCTCGGCATGCACATCCCGCCTCTCTGGCCGGCTGAG-
771 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCC-CTCTGGCCGGCTGAGC
* * * **
5252507 AGCCCGCACGCTCATTTCACT-AGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAA
835 A-CCCGCACGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * **
5252565 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGCTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * * *
5252630 CTCAAGCATTTGCTGATGCCGCATTTTTCTTCGTCGGGGTACCATCGTCGAAGCATCGCTGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCT-GGAGCATCGC-CGAGA
* * ** * * *
5252695 ACCTGACCGGCGGCATTGGGGTTCCGACAATCGAAGGGGCCGAGGGGGCTGTGCACAAATGATGT
129 ACCTGACCGGCGGCATT-GGGTTCCGGCGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGT
* *
5252760 GCGATGGGTGCTGGTACTTAGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
5252825 CACCCGCTTAAAGAGCATTTGAGATTTTACCGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
5252890 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * ** *
5252955 GTGAATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAAGCCAAAACTCCTTCCGAAAA
387 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * *
5253020 AATTTAAAAAAATCCCCAACCGTAAAAAGATTT-GAAAATCATGAAAAATAGAAAACGAGTCGTC
452 AATTTTAAAAAATCCCGAACCGTAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
5253084 TTGCCATGAAACTTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
5253149 CATCGACACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
581 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-
* ** * *
5253214 TGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGACTGCCCGCCCACTCATTT-GTTGGTTG
645 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CC--C-GCCCG----CTCGTTTCGTCGGTTG
* * * *
5253278 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCCGCAGCA
702 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAGCAGCA
5253340 CCCATTGGGC
Statistics
Matches: 20592, Mismatches: 3985, Indels: 3565
0.73 0.14 0.13
Matches are distributed among these distances:
867 6 0.00
868 56 0.00
869 23 0.00
870 20 0.00
871 15 0.00
872 16 0.00
873 28 0.00
874 232 0.01
875 353 0.02
876 250 0.01
877 432 0.02
878 190 0.01
879 657 0.03
880 953 0.05
881 938 0.05
882 215 0.01
883 464 0.02
884 193 0.01
885 201 0.01
886 723 0.04
887 71 0.00
888 787 0.04
889 339 0.02
890 498 0.02
891 1366 0.07
892 314 0.02
893 110 0.01
894 688 0.03
895 796 0.04
896 1336 0.06
897 102 0.00
898 65 0.00
899 115 0.01
900 457 0.02
901 760 0.04
902 519 0.03
903 953 0.05
904 299 0.01
905 398 0.02
906 199 0.01
907 233 0.01
908 134 0.01
909 19 0.00
910 95 0.00
911 12 0.00
912 26 0.00
913 17 0.00
914 48 0.00
915 30 0.00
916 35 0.00
917 20 0.00
918 21 0.00
919 10 0.00
920 10 0.00
921 20 0.00
922 411 0.02
923 65 0.00
924 18 0.00
925 7 0.00
926 171 0.01
927 57 0.00
928 21 0.00
929 18 0.00
930 21 0.00
931 16 0.00
932 23 0.00
933 17 0.00
934 35 0.00
935 20 0.00
936 78 0.00
937 40 0.00
938 43 0.00
939 41 0.00
940 29 0.00
941 30 0.00
942 52 0.00
943 17 0.00
944 40 0.00
945 17 0.00
946 5 0.00
947 20 0.00
948 12 0.00
949 19 0.00
950 16 0.00
951 16 0.00
952 24 0.00
953 11 0.00
954 14 0.00
955 33 0.00
956 38 0.00
957 20 0.00
958 25 0.00
959 18 0.00
960 16 0.00
961 29 0.00
962 11 0.00
963 12 0.00
964 15 0.00
965 6 0.00
966 10 0.00
967 11 0.00
968 20 0.00
969 15 0.00
970 10 0.00
971 17 0.00
972 22 0.00
973 17 0.00
974 16 0.00
975 28 0.00
976 18 0.00
977 16 0.00
978 26 0.00
979 22 0.00
980 31 0.00
981 20 0.00
982 34 0.00
983 10 0.00
984 14 0.00
985 27 0.00
986 16 0.00
987 17 0.00
988 21 0.00
989 5 0.00
990 14 0.00
991 5 0.00
992 5 0.00
993 185 0.01
994 16 0.00
995 22 0.00
996 16 0.00
997 10 0.00
998 25 0.00
999 18 0.00
1000 11 0.00
1001 21 0.00
1002 36 0.00
1003 25 0.00
1004 27 0.00
1005 14 0.00
1006 11 0.00
1007 19 0.00
1008 13 0.00
1009 16 0.00
1010 14 0.00
1011 4 0.00
1012 11 0.00
1013 4 0.00
1014 7 0.00
1015 10 0.00
1016 12 0.00
1017 7 0.00
1018 13 0.00
1019 2 0.00
1020 3 0.00
1021 8 0.00
1022 8 0.00
1023 1 0.00
1024 550 0.03
1025 401 0.02
1026 277 0.01
1027 328 0.02
1028 305 0.01
1029 273 0.01
1030 362 0.02
1031 304 0.01
1032 284 0.01
1033 840 0.04
1034 256 0.01
1035 197 0.01
1036 281 0.01
1037 370 0.02
1038 275 0.01
1039 231 0.01
1040 1050 0.05
1041 460 0.02
1042 261 0.01
1043 339 0.02
1044 204 0.01
1045 486 0.02
1046 364 0.02
1047 163 0.01
1048 692 0.03
1049 662 0.03
1050 161 0.01
1051 286 0.01
1052 237 0.01
1053 219 0.01
1054 215 0.01
1055 145 0.01
1056 179 0.01
1057 104 0.01
1058 264 0.01
1059 81 0.00
1060 92 0.00
1061 131 0.01
1062 291 0.01
1063 181 0.01
1064 157 0.01
1065 97 0.00
1066 198 0.01
1067 105 0.01
1068 91 0.00
1069 126 0.01
1070 156 0.01
1071 49 0.00
1072 89 0.00
1073 88 0.00
1074 52 0.00
1075 98 0.00
1076 221 0.01
1077 72 0.00
1078 81 0.00
1079 114 0.01
1080 89 0.00
1081 65 0.00
1082 30 0.00
1083 101 0.00
1084 34 0.00
1085 113 0.01
1086 38 0.00
1087 34 0.00
1088 23 0.00
1089 62 0.00
1090 51 0.00
1091 106 0.01
1092 36 0.00
1093 18 0.00
1094 22 0.00
1095 24 0.00
1096 9 0.00
1097 24 0.00
1098 13 0.00
1099 21 0.00
1100 15 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (891 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCTGGAGCATCGCCGAGAAC
CTGACCGGCGGCATTGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCGCATC
CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCAGCAGCAGGATCAGCAGCACGCAG
AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCTCTGGCCGGCTGAGCACCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5227875 original size:26 final size:26
Alignment explanation
Indices: 5227846--5227898 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5227836 GTTGACTTAG
5227846 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCGCAGTCTAA
* *
5227872 GCATATGGAGTTCATTTGCAGTCTAA
1 GCATACGGAGTTCATTCGCAGTCTAA
5227898 G
1 G
5227899 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCGCAGTCTAA
Found at i:5228787 original size:26 final size:26
Alignment explanation
Indices: 5228738--5228788 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
5228728 TTGACTTAGG
* **
5228738 CATATGAAGTTCATTTGCAATCTAAA
1 CATACGAAGTTCATTCCCAATCTAAA
*
5228764 CATACGAAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATTCCCAATCTAA
5228789 GATTGGACCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.35, C:0.22, G:0.12, T:0.31
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAATCTAAA
Found at i:5229093 original size:891 final size:891
Alignment explanation
Indices: 5226081--5243929 Score: 11113
Period size: 896 Copynumber: 19.7 Consensus size: 891
5226071 GTTGACTTAG
* **
5226081 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
5226146 CTCGGGCATGTGTTGGTGTCGCATTTTTCTTTGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCAT---C---G--T---CGGAGA
* *
5226211 ACCTGACCGGCGGCATTAGGGTTCCGGCGATCGGGGGCGTCGGGGGGGTGTG-GCACATGATGTG
120 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGTG
* * *
5226275 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTGAC
184 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* ** *
5226340 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTATCAGTAGCCATTAAAGTGTCTAAAAT
249 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
5226405 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTG
314 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** * * *
5226470 TGCATGCCAAAAAAAATACAAGGATCGTGTCTACCAAGCTTGGGGCCCAAACACCTTCCGAAAAA
379 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
5226535 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCTTTAAAAATAGAAAACGAGTCGTCTT
444 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
**
5226600 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGAATAAAAATGGCA
509 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
5226665 TTGGCACACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCTACGGCTT-CT
574 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC-
* * *
5226729 GCATCCCGTCTCCCTGGCCGACGTAGT----GCCCG--C-CCGCCCACTCGTTTCGTCGGTTGGC
638 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGC
* * * ** * * * * *
5226787 TGAGGCATATGGAGTTCATTCCCAGACTAAGATTGGATCAGATCAAGGGTTGCAGCAGTAGGATC
703 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
* * * * *
5226852 AGCAGCACGCAAAGGGGGACCCGATCGATCCCCGACTTGCACATCCCAG-CCCTCTGGTCGGCTG
768 GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCC-GCCCCTCTGGCCGGCTG
** * * *
5226916 AGCGCTGGCACCCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
832 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* **
5226976 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGAAAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
5227041 CTCGAGCATGTGCTAGTGCCACATTTTTCTTCGTC-AGGGCACCATC-ACTGGAGCATCACCGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGA-GGCACCATCGTC-GGAG-A--ACC---
* * * * *
5227104 GAATATGACCGGCGGCATTAGGGTTTCGACGATCGGGGGGGCCGGGGGGGTTTGCACACATGATG
123 -----TGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATG
* * * *
5227169 TGCGATTGGTGCTGGTACTTGGGCCTTATATTGGCCCCATATCCCTCATCAAACCTCAAGAACTC
182 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
**
5227234 ATGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
247 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
5227299 ATGGGGACACTTTTTTCAAATGGTCACAAGATCTTGTACAGTTCGAGTTTTTAGCTAAAGTTTTT
312 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
** * * *
5227364 TT-TGCACACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCGTTCTGAA
376 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
** *
5227428 AAAATTTTAAAAAATCCAAAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
441 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
5227493 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
506 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * * * * *
5227558 GCATTGGCATGTGGAAATATGAAGAAGTGCCTAAACGCACCTACCACCCTATCGAACCAGGGCTT
571 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * *
5227623 ATGCATCCCGTCTCTCTGGTCGGCGTAGT----GCCCGCCCGCCG---GCTCGTTTCGTCGATTG
636 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTG
* * * * * ** * *
5227681 GCTTATGTATACAGAGTTCTTTCCTAGTCTAAGATTGGACCAGACCAAGGGTTACGGCAGCAGGA
701 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
* * * *
5227746 TCGGCAGCACGCAGAGGGGCACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTTTAGCCGGCT
766 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
5227811 GAGCGCCCGTACGCTCGTTTCAG-GGGTTGACTTAGGCATACGGAGTTCATTCGCAGTCTAA
831 GAGCGCCCGCACGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * *
5227872 GCATATGGAGTTCATTTGCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * *
5227937 CTTGAGCATGTGCTGGAGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCACCTGACCAGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGAACCTGACCGGC
* * *
5228002 GGCATTGGGGTTCAGGCGATCGGGGGGCCGGGGGGGGTGTGCGCAGATGATGTGC-ATAGAGTGC
131 GGCATTGGGGTTCCGGCGATCGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGAT-GGGTGC
5228066 TGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAA
194 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
5228129 AGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
259 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
5228194 TTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCTAA
324 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
5228259 CAAAAATACAAGGATCACGTCTACCAGGTTTGGGACCAAAACTCCTTTCGAAAAAATTTTGAAAA
389 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
** *
5228324 ATCCCGAACCGTAAAAAGTTTCAAAAATGGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
454 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
5228389 TTCACGTGAAGGCTTAACGGACCATTGTATGGATTTACAAGCCATAAAAATGGCATTGGCACATA
519 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATA
* *
5228454 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGTATCCCGTCT
584 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
5228519 CTCTGGCCGACGTAGCGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGACCTAGGCATAC
649 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* ** * **
5228584 AGAGTTCATTCATAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTGGCAGGAAT-GGCAGCACG
713 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGG-ATCGGCAGCACG
* * ** * * * *
5228648 TAGAGGGGGACCTGGGCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGTA
777 CAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * ** *
5228713 CGCTCATTTCGTGGGTTGACTTAGGCATATGAAGTTCATTTGCAATCTAA
842 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
5228763 ACATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
5228828 GTCGGGCATGTGTTGGTGGCACATTTTTCTTCGTCGAGGCAACATCGTCGGATAACCTGACCGAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGAACCTGACCGGC
* * * * * * *
5228893 GGTATTGGGGTACCGGTGAT-TGGGGGTCGGGGGGGTGTGCGCACATGATGTGGGATGGGTGGTG
131 GGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * * *
5228957 GTACTCGGCCCTTATATTAGCCCCCTATCCCTCATGAAACCTCAAGAACTCACACCCCCTTAAAG
196 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
5229022 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGCCACTTTT
261 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
5229087 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTTCATGCCAACA
326 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
** *
5229152 AAAATACAAGGATCACGTGAACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
391 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * ** *
5229217 CCCGAACCGCAAAACGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
456 CCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * * * ****
5229282 CATGTGAAGGCTTAGGGGACCATTGTATGAATTTAAAAGCCATAAAAAGGGCATTGGTATGCGGA
521 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGA
* *
5229347 AATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTT
586 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * *
5229412 CTGGCCGGCTTAGTGCCCGCACGCCCGCCCGCCCACTTGTTTCGTCGGTTGGCTTCTTAGGCATA
651 CTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGG---CTTAGGCATA
* * * * * * * *
5229477 CGAAGTTTATTCCCAGTCTAAGATTAGACCGGACTGAGGGTTACGACAGCAGGATCGGCAGCACA
712 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACG
* * * *
5229542 CAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCACTCTAGCCGACTGAGCGCCCACA
777 CAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
5229607 CGCTCGTTTCGTGGGTTCACTTAGGCATACAGAGTTCATTCCCAG--T--
842 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** *
5229653 -C-TA---AG---------A-TC--AGAT-----CGGACCGAGGGTTATGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
5229696 -TGCGGGCATGTGCTGGTGCCGTATTTTTATTCATCGGGGCACCATCGTCGGAGCATCACCAGAG
66 CT-CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTC---G--------GAG
* * * *** * * *
5229760 AACCTGACCGACGGTATTAGGGTTCTAACGATCGGGGGGTCGGGGGGGTGTGCGAAAATGATGTG
119 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
5229825 CGAAGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCAC
184 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
5229890 AGCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
249 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
5229955 GGGGACACTTTTTTGAAATGGTCACAAAATCTTATACACATCGAGTTTTTAGCTAAATTGTTTTG
314 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
5230020 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAA
379 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * ** * *
5230085 ATTTTAAGAAATCCCGAACCGCAAAAAATTTTGAAAATCATGAAAAATAGAAAACGAGTCATTTT
444 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
5230150 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCA
509 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* ***
5230215 CTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
574 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** * * * *
5230280 CATCCCATCTCTATGGTTGGTGTAGTGCTCGCCCGCCTGCCCGCCCGCTCTTTTCGTCGGTTGGC
639 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * * *
5230345 TTAGGCATACGAAGTTCATTCCCACTCTAAGATCGGACCGGACAGAGGGTTGTGGCAGCAGGATT
703 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
* * * * * *
5230410 GACAACACGTAGAGGGGGACCCGATCGATCCCCGGGTTGCGCATCCAC-CCCCTCT-ACCGTACT
768 GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC-CGCCCCTCTGGCCG-GCT
*
5230473 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAA
831 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
**** * * ** *
5230534 G-ATCCGACCGGACCGAGGGTTGCGGCAG-C-AAGAT-TGACAACACACAGAGGG-TGCCCGACA
1 GCAT---A-CGGA--GTTCATT-C-CCAGTCTAAGATCGGAC--CGGACCGAGGGTTG--CG---
** * * * ** * **
5230594 GATCCCCGACTCGCACAT-CTCGCCCCTCTGGCCGACTGAGCAGCCGCACGC-TCGTTTCGTGGG
51 G-----C-A---GCACATGCT-G-GGCTC-GGGC-A-TGTGCTGGTGC-CGCAT-TTTTC-TTCG
* *** * * ** * ** * * * * *
5230657 TTGACTTAGGCAT-AT-GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCCCAAG
99 TCGAGGCA-CCATCGTCGGAGAACCTGACC-GGC--GGCAT-TGG-G---GTT-CC-G--GC--G
* * * * ** * * *** * * **
5230720 ATCGGATCGGACC-GAGGGTTACGACAGCACATGCTGGGCTCGGAAATGTGCTGGT--GTCGCAT
149 ATCGG--GGGGCCGGGGGGGTGTG-C-GCACATGATGTG--C-GATGGGTGCTGGTACTTGGCCC
* * * * * * **** ******* * * *
5230782 TTTTCTTCGTCGGGGCACC-AT-CGTCA-GAGAACCT-GACTGGTGGCATTGGGGTTTCGACGAT
207 TTAT-AT--T--GGCCCCCTATCCCTCATCA-AACCTCGA--GAACTCACACCCCCTT-AAAGAG
**** * ******** * * * **
5230843 CGGGGGGGCCGGGGGGGGTGTGC-GCACATGATGTGCGATGT-GTGCTGGTACTTGGCCATTATA
263 CATTTGAGATTTTACAGGTTTGCTGC-CA-G-T-AGCCAT-TAAAG-T-GT-C-T-G--A--A-A
** ** * ** ** *** * * ** *
5230906 TTAGCCCCCTATCCCTAATCAAA-CCTCA-AAAA-CTCACACCCCCTTAAAGAGCATTT-G-AGA
313 TGGGGACACT-T---TTTTCAAATGGTCACAAAATCTTGTA--CACTT--CGAGTTTTTAGCTGA
* ** ** * * * ** **
5230966 TTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGA-CACTTTTTTCAA-AAT-
370 ATTT-T---TTTG-TG-CA-T-GCCAACAAA---AAT-ACA-A-GGATCACGTCTACCAAGTTTG
* * **
5231028 GGTCATAAAATCTTGTACACTT-CGAGTTTTTAGCTGAATTTTTTGTGCATGCCTAAAAAAATGC
421 GGGC-CAAAA-C---T-C-CTTCCGA------A----AA---AAT-T---T---T-AAAAAAT-C
** * **
5231092 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAAAAATTTAAAAAAGTTTCAAA
457 -CCGAAC-CG--TAAAAAGTTT-----C-AAA-----------------------AA---TC---
* * *
5231157 AATCGTGAAAAATAGAAAACAAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCAT
483 -A---TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
*
5231222 TGTATG-A--T----GGCAT-----TGGCA-T-G--C--AGAAATATGAAGATGTGCCTAAACCC
544 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCC
* *
5231269 A-C--CCA-CC--T--A--CA-----T--GCATCCCGTCTCTTTGGCCGAC-TAGT----GCCCG
609 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* ** *
5231312 --C-CCGCCCGCTCGTTTTGTCGGTTGGCTTTCGCATACGGAGTTCATTCCTAGTCTAAGATCAG
674 CCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
** * * * * * * * * * *
5231374 ACCAGTTCGAGGGTTACGGTAGCAAGATCTGCACCATGCAGAGTGGAACTCGACCGATCCCCGGC
739 ACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGC
* * * *
5231439 TTGCGCATCCCACCCCTCTGGCCGGCTAAACGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCA
804 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* *
5231504 TACGGAGTTCATTCCCAATCTAC
869 TACGGAGTTCATTCCCAGTCTAA
* * * * * * * * *
5231527 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACTGGACTGAGGGTTACGACAGCACTTGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** ** * * * *
5231592 CTCGAGCAACTGCTGGTGATGCATTTTTCTTC-AC-CGG-AGCATCGTCGGAGAACCTGACCGGT
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGAACCTGACCGGC
* * * *
5231654 AGCATTGGGGTTCCGACGAT--------C-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTT
131 GGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
** * * *
5231710 GTACTTTACCCTTATATTGGCCCCCTAACCCTCATCAAACCTGGAGAACTCACACCCCCTTAATG
196 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
5231775 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTT
261 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* ** *
5231840 TTAAAATAATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
326 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* *
5231905 AAAATACAAAGGATCAAGTCTACCAAGTTTGGGGGCCAAAAATCCTTCCGAAAAAA-TTT-AAAA
391 AAAATAC-AAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * *
5231968 ATCTCGAACCATAAAAAG-TTCAAAAATCATGAAAAATAGAAAACGAGTCGTC-TGCCCTTGAAA
454 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG-CCATGAAA
*
5232031 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAACAAGCCAGAAAAATGGCATTGGCATG
518 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT-ACAAGCCATAAAAATGGCATTGGCA--
* *
5232096 CA-A-AAATATGAAGATGTGCCTAAA-CCACCTA-CACCCTATCGATCCACGGCTTACGCATCTC
580 CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* *
5232157 GTCTCTCTGGCCGGCGTAGTGCCCTCCGCCGCCAC-CCGCCCAGCTTGTTTCGTCGGTTTGGCTT
645 GTCTCTCTGGCCGGCGTAGTGCCC-GC-CCGCC-CGCCGCCC-GCTCGTTTCGTCGG-TTGGCTT
* ** * * * *
5232221 AAGCATACGGAGTTCATTCGGAATCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAAGATCAG
705 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGG
** * * * * * * **
5232286 CAGCACATAGAGGGGGACCC-AGCCAATCCCCGGCTAGCGCATCTCACCCCTCTAGCTAGCTGAG
770 CAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
5232350 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGATTTCATTCCCAGTGTAA
834 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
5232408 GCATACGGAGTTCCTTCCCAATCTAAGATCGGACCGGATCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
5232473 CTCGAGCATGTGCTGGTGCCTCATTTCTT-TTCGTCGAGGCATCATCGTCAGAGCATCGCCGAAG
66 CTCGGGCATGTGCTGGTGCCGCATTT-TTCTTCGTCGAGGCA-C--CATC---G--TCG--G-AG
* * * *
5232537 AACCTGACTGGTGGCATTAGGGTTCCGGTGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGT
119 AACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * *
5232602 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCTTCAAACCTCAAGAACTCA
183 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
5232667 CA-CCCCTTAAAGAGCATTTGA-ATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
5232730 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
5232795 GTGCATGCCAACAAAAATACAAGGATCACGTCTACC-AGTTTGGGGCCAAATCTCCTTCTGCAAA
378 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
5232859 AATTTTAAAAAAATCCTGAACTGTAAAGATGTTT-AAAAATCCATGAAAAATAGAAAATGAGTCG
443 AATTTT-AAAAAATCCCGAACCGTAAA-AAGTTTCAAAAAT-CATGAAAAATAGAAAACGAGTCG
* * *
5232923 TCTTTGCTCATGAAAACTTCACGTGAAGGCTTAAGGGACCATTG--TGAATTGA-AAGCGATGAA
505 TC-TTGC-CATG-AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
** * *
5232985 AATGGCATTGGCATGTTAGATAATATGAAGATGTGCCGTTAACCCACGCTAGCACTCCTAATCGA
567 AATGGCATTGGCA-CATAGA-AATATGAAGATGTGCC-TAAACCCAC-CTACCAC-CCT-ATCGA
* *
5233050 CTCCAC-GCTTGC-CATACCCG--TCTCTGTCCGG-GCTAGT---------------GTCCGCTC
626 -TCCACGGCTTGCGCAT-CCCGTCTCTCTGGCCGGCG-TAGTGCCCGCCCGCCCGCCGCCCGCTC
* ** * *
5233095 GTGTCGTCGGTTGGCTTAGGCATATCGGAGTTCCATT-CCAGTCCTAAAGATTGGACCGGATCGA
688 GTTTCGTCGGTTGGCTTAGGCATA-CGGAGTT-CATTCCCAGT-CT-AAGATCAGACCAGACCGA
* ** * * *
5233159 GGGTTGCGGCAGCAAGGGATCGGTAGCACTTAGA-GGGGACCCGACCGATCCCTGTCTTGCGC-T
749 GGGTTGCGGCAGC-A-GGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCAT
* * * * * * * *
5233222 --C-CCCTTCTGTCTGG-TGAACGCTCGAATGCTCATTT-GTGGGTTTGAC-TA-GCATAGCGGA
812 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG-TTGACTTAGGCATA-CGGA
*
5233280 TTTCATTCCCGAGTCTAA
875 GTTCATTCCC-AGTCTAA
* * * ** *
5233298 GCATTACCGGA-TTCATTCCCAGTCTAAGATCGGATCGGATCGAGCG-TGACAACAGCACACGTC
1 GCA-TA-CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG-CGGCAGCACATG-C
** * * *
5233361 T--GCTCGGG-ATCTGTGCTGGTGCCATATTTTTCTTC-AC-TGG-ACCATCGTAGGAGAACCTG
62 TGGGCTCGGGCA--TGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGAACCTG
* * *
5233420 ACTGGCGGCATTGGGGTTCTGGCGAT-GGAGTGGGCCGGGGGGGATGTGTGCACATGATGT-CTG
125 ACCGGCGGCATTGGGGTTCCGGCGATCGG-G-GGGCCGGGGGGG-TGTGCGCACATGATGTGC-G
5233483 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
186 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
5233548 CCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
251 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
5233613 GGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTG
316 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * ** *
5233678 CATGCCAACAAAAATACAAGGATTATGTCTACCAAGTTTGGGGTGAAAACTCCCTCCG-AAAAAT
381 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* ** *
5233742 TTTAAAAAATCCTGAATGGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
446 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
5233807 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAACGGCATT
511 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*** * *
5233872 GGCATGCAGAAATATGAAGATGTGCCTAAA-CAACCTACCACCCTATCGATCCACGGCTTGCACA
576 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* *
5233936 TCCCATCTCTCTGGCCGACGTAGT---C-CCCG---GCCGCCCGCTCGTTTCGTCGGTTGGCTTA
641 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* *
5233994 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACAGAGGGTTGTGGCAGCAGGATCGG
706 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGG
* * * *
5234058 CAACACGCAGAGGGAGACCC-AGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCAGCTGAG
770 CAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
5234122 CACCCGCACGCTCGTTTCCTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
5234180 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-GGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
5234244 CTTGGGCATGTGTTCGAGCTGCATTTTTCTTCGTCGGGGAACCATCGTCGTAGCATCGGCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCA---TC---G--TC-G-G-AGA
* * * * **
5234309 ACCTAACCGGCGGCATTGGGATTCCGACGATGGGGGGGGCCGGCAAGGGTGTGCGCACATGATGT
120 ACCTGACCGGCGGCATTGGGGTTCCGGCGAT-CGGGGGGCCGG-GGGGGTGTGCGCACATGATGT
* * * *
5234374 GCGATGGGTGCCGGTACTTGGCCCTTTTATTGGCCCCCTATCTCTCGTCAAACCTCGAGAACTCA
183 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
5234439 CACCCCCTAAAAGATCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTGAAT
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * * *
5234504 TGAGGACACCTTTTTGAAATGGTCACAAAAGCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTT
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
5234569 GCGCATGCCAACAAAAATACAAGGATCATGTCT-CCAACTTTGGGGCCAAAACTCCTTCCGAAAA
378 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * * *
5234633 AATTTTAAAAAATCTCGCACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGGGTCGTCT
443 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
5234698 TGCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGC
508 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
5234763 ATTGGCACATAGAAATATGAAAATGTGCCTAAACCCACCTACCATCGTATCGATCCACGACTTGC
573 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
5234828 GCATCACGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCATCGGTTGG
638 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGG
* * * *
5234893 CTTAGTCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGAGGCAGCAAGAT
702 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT
* * ** * * ** * * *
5234957 CAGCAGCATGCAGAGGGGGACCCGGCCGATCCCTGGCCTGCAAAACCCGCCCCACTGGCCGGCTA
767 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
**
5235022 AGCAACCGCACGCTCGTTTCGTGGG-TGAC-T-----TA--G-G--------CA---T--
832 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
5235059 --ATA--GAGTTCATTGCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
5235120 CTCGGGCATGTGTTCGTGTCGCATTTTTCTTC-ACAGGGGCACCATCGTTGGAGCATCGCAGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GAGGCACCATC------G--T--C-GGAG
* * * * *
5235184 AACCTGACCGGCTGCATTGGGGTTCCGGTGATCGGGGGGGCC-GGGGGGTGTTCACAAATGATGT
119 AACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
5235248 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCA
183 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
5235313 CACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
5235378 TGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
5235443 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCACAACTCCTTCTGAAAG
378 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* ** * *
5235508 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAGAACGAGTCATCT
443 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * *
5235573 TGCCATGAAACTTCGCGTCAAGGCTTAAGGGACGATTGTATGAATTTAAAAGCCATAAAAATGGC
508 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
5235638 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGGATCCACGACTTCC
573 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * *
5235703 GCATCCCATCTCTATGGCCGGCGTAGTGCCCACCCACCTGCCCGCCCGCTCTTTTTGTCGGTTGG
638 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGG
* * ** * * *
5235768 CCTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGATCGAGGGTTGCGACAGCAGGAT
702 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT
** * * * * * ** *
5235833 TTGTAGCATGCAGAGGGGGACCCGACCAATCCTCGGCTTGCATATCCTGCCCCTCT-GCCTGGCT
767 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GGCT
* * * *
5235897 GAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAA
831 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * * * *
5235958 GCATATGAAGTTCATTCCCAGTCTAAGATTAGACCAGATCAAGGGTTGTGACAGCACATGCGGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * ** *
5236023 CTCAAGCATGTGTTGGTGCCGCATTTTTCTTCG-CCAGGGCACCATCACCGGGGAACCTGACCGG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGA-GGCACCATCGTCGGAGAACCTGACCGG
* * * * **
5236087 TGGCATTGGTGTTCCGGTGATCGGGTGGGCCGGGGGGGATTGTGTGCACATGATGTGCGACAGGT
130 CGGCATTGGGGTTCCGGCGATCGGG-GGGCCGGGGGGG--TGTGCGCACATGATGTGCGATGGGT
* *
5236152 GCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCATT
192 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
5236217 AAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
257 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
5236282 TTTTTTCAAATGGTCACGAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTAGTGCATGC
322 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-GTGCATGC
* * * * * *
5236347 CAAAAAAAATACAACGATCATGTCTACTAAGTTTGGGGCCAAAACGCCTTCCAAAAAAATTTTAA
386 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
*
5236412 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGA
451 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
5236477 AACTTCACGTGACGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATGGCATTGGCAC
516 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
5236542 ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
581 ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * ** * *
5236607 TCTCTCTGGTCGGCGTGGTGCCTGCCCGTCCGCCGCCTACTC-TTTTGTCGGTTTGGCTTAAGCA
646 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCGTCGG-TTGGCTTAGGCA
* * * * * ** * **
5236671 TATGGAGTTCATTCCCAGTCT-AGATCAGATC-GACTGAAGGTTAC-ATAGTAGGATCGATAGCA
710 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* * ** * * *
5236733 -GCACCA-GGGGACCCGGTCGATCCCCGGCTTGCGCATCCAACCACTCTGGTCGGCTGAGCACCC
775 CGCA-GAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * *
5236796 GCGCGCTCAATTTCGTCGGTTGACTTAGGCATACAGAGTTCA-TCCCAGTCTAA
839 GCACGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
5236849 GCATACGGAGTTCATTCCCAGTCT-AGATTGGATCGAACAGAGGGTTGCGGTTAGCAGGAT-CGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGG-CAGCA-CATGCTG
* * *** * ** * *
5236912 GAGCTCGTAGAGGA-G-GACCGGT--CG-ATTCCCACTTC--CAATCTCACCCCTCTGGCCTGCT
64 G-GCTCG--G-GCATGTG-CTGGTGCCGCATT-TTTCTTCGTCGA-GGCA-CCATC--G--T-CG
* * * * * ** ******* *
5236970 GAGCA-CTCG-CAC-GC-TCAGTTTCGTGGGTTGACTTAGG-GATACAGAGTTCATTCCCAGTCT
116 GAGAACCT-GAC-CGGCGGCA--TT-G-GGGTT--C--CGGCGAT-CGGGGGGCCGGGGGGGTGT
** * * * ** * * * ** * * ** *
5237030 AAGCATACA-GATTCATTCCCA-GTCTAAGATCGAAC-CAGACC-GAGGGTT-GCAACAGCAC-A
170 --GCGCACATGA-T--GTGCGATGGGT--GCTGGTACTTGGCCCTTA-TATTGGC--C--CCCTA
* * **** * * * * ** ** * **** * * **
5237089 TGCTGGGCTCGAGCATGTGTTGTG-CCGCATTTTTCTTCGTCGGGGCACCATCGTCG-GACATTA
223 T-C---CCTC-ATCAAACCTCGAGAACTCA---CACCCCCTTAAAG-AGCAT--TTGAGATTTTA
* ** ** * ** * ** *** **** ***
5237152 CCGG-GAGAACCTGAACC-GGCGGCATTAGGGTTTC-GCGATCGGGGGTGC-TGGAGCGGTTGCG
277 CAGGTTTG---CTG--CCAGTAGCCATTAAAGTGTCTGAAAT-GGGGACACTTTTTTCAAATG-G
* * * *** * ** * ** * * * * ** *
5237213 -CACAAGATGTGTGAAGGGTGCTG-GTACTTGGC--CCTTATATTG-GCCCCCTACCCCTCATCA
335 TCACAAAATCT-TGTACACTTC-GAGTTTTTAGCTGAATTTTTTTGTG---CAT-GCCAACA-AA
* * * ** ** *** *** *
5237273 AATCGCGAGAACTCGCACCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCC-A
393 AAT-ACAAGGA-T--CACGTC-TACCAAG--TTTG-G---GGCCA---AAACT-CC--T-TCCGA
** * * ** *** ** ** * * * * * ****
5237337 TTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA-TGGTCACAAATCTTG----GTACACTTTGA
440 AAAAATTTTAAAAAATCCCGA-AC--CGTAAAAAGT-TTCAAAAATCATGAAAAATAGAAAACGA
* * ** **** * * **
5237397 GT-TTTTTAG-C-TGAATACTTTTGTGCATCGCCAAAAAAAATACAAGGATCACA-TCTACCAAG
501 GTCGTCTT-GCCATGAA-AC---T-T-CA-CG--TGAAGGCTTA-AGGGA-C-CATTGTATGAA-
*** * * * * * * * * ** ** **
5237458 TTT-GGGGCC--AAAACT-CCTTTCG-A-A-AAAAATTTTTAAAAAAT-CCCGAACCGCAAAAAG
552 TTTACAAGCCATAAAAATGGCATTGGCACATAGAAA-TATGAAGATGTGCCTAAACC-C---ACC
** **** ** *** * ** * ** * * * ** * * * * *
5237515 TTTCAAAAAATC-ATGAAAAAAC-AG-AAAACGAGT-TGTCTTGCCATG-AAACTTCACG--TGA
612 TACCACCCTATCGAT-CCACGGCTTGCGCATCCCGTCTCTCTGGCC-GGCGTAGTGCCCGCCCGC
** ***** ** ** * * ** * * * * * *
5237573 AGGCTTAAGGAACCATT-GTATGAATTTAC-AAGCCATAAAAATGGCA-TTGGAAT-GCAGAAAT
675 CCGCCGCCCGCTCGTTTCGT-CG-GTTGGCTTAGGCAT----ACGG-AGTT-CATTCCCAG---T
* * * * ** * *** ** ** * *
5237634 ATGAAGAT--GTACCTAAACCCA-----CCACCACCCTAATCATC--CACG--GCTTGCGCATCC
729 CT-AAGATCAG-ACC-AGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG-AGGGGGA-CC
** * * * * ** * * *** *
5237688 C-ATCTCTCTGGCCGGCGTAGTGCCCA-CCCGCTCGTCT-GCTC-G-T-TTCGTCGGTTGGATTA
789 CGATCGATC--CCCGGC-T--TGCGCATCCCGCCCCTCTGGC-CGGCTGAGCGCCCGCACG-CT-
* * * * * * * * * **
5237747 GGCATACG-GAGTTCA-TTCCCAGTCTAAGATCGGA-TTGA-ACTGAGGGT-TACA
846 CG-TTTCGTGGGTTGACTT---AGGC--ATA-CGGAGTTCATTCCCA--GTCTA-A
* * ** * * * ** * * * * *
5237798 GCA-GC-AAGATTGGTACACA--C--AGA-GGGACCGCCGATCC-CTGCTTAC-GCATCCCCCCT
1 GCATACGGAG-TTCATTCCCAGTCTAAGATCGGACCG--GA-CCGAGGGTTGCGGCA--GCACAT
* ** ** * * ** * * *
5237854 -CTGCCGGCTAGCACCCGACGCTCGTTTCG--TTGGTTGACTTAGGCATACGGAGTTCATTCCCA
60 GCTG--GGCTCGGGCATG-TGCTGGTGCCGCATT--TT-TCTT---CGT-C-GAG-GCA---CCA
* ** * ** * * * ** *
5237916 GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGA
110 -TC---G--T-CGGAGAACCTGACC-GGC--GGCAT-TG--G--GGTT-CC-GGC---GATC-G-
** ** * * ** * * * * ***
5237981 CCGGATC-GAGGGTTACGACAGCACATGCTGGGCTCGGGCAT-GTTGCTCGTA-TT-TTTCTTCA
153 GGGGGCCGGGGGGGTGTG-C-GCACATGAT--G-T-GCG-ATGGGTGCTGGTACTTGGCCCTT-A
** * * * * * ** * *
5238042 T-CGGGGCACC-AT-CGTCGGAGC-ATCC-CGAAGAAC-CTGA---CC--AATG-GCA-TTG-GG
210 TATTGGCCCCCTATCCCTC--ATCAAACCTCG-AGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * * * * * ****
5238093 TTCCGATGATCGGGGGGTCGCGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTA
272 TT----TTA-C--AGGTTTGC---TGC-CA-GT-A---GCCATTAAAG-T-GT-C-T-G-----A
* * ** * ** *** ** * * *
5238158 TATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTT
311 AATGGGGACACT-T---TTTTCAAA---TG-G---TCACAAAATCTTGTACA-C-TTCGAGTTTT
** ** ** ** * * * * ** *
5238223 TA-C--AGGTTTGCT-ACCAGTAGCC-ATTAAAGTGTCTGAAATGGGGA-CACTTTTTTCAA--A
363 TAGCTGAATTTTTTTGTGCA-T-GCCAACAAAAAT-AC---AA---GGATCACGTCTACCAAGTT
* * * **
5238280 T-GGTCACAAAATCTTGTACATTTCGATTTTTTGATGAAGTTTTTTGTGCATGCCAACAAAAATA
419 TGGGGC-CAAAA-C---T-CCTTCCGA-------A--AA---AATT-T---T----A-AAAAAT-
** * ** * * * *
5238344 CAAGGATCACGTCTACCAAGCTTGGGGTCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAA
456 C-CCGAAC-CG--TAAAAAG-TT----TCAAAAAT-CAT--G-AAAAA---TAGAAAA-C--GAG
* *** *** * *** * ** * * *
5238409 CCGTAAAAAGTTTTGAAA-ATCA--TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCAC
502 TCGT--CTTGCCATGAAACTTCACGTGAAGGCT--TAAGGGA-CCA--TTG-TATG-AA-TTTAC
*** * * ** * * *****
5238471 GTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATACCATTGGCACACAAAAAT
557 ---AAGCCATAA---A--AATG---GCATTGGC-A--CATAGAAAT---A-T-G-A-AGATGTGC
* ***** * * * * * ** *
5238536 ATAGAGATGTGGCTA-AACCC-ACCTA-CCAC-CCTAT-CG-ATCCACGGCT-TGCGTATCCCGT
601 CTA-A-ACCCACCTACCACCCTATCGATCCACGGCT-TGCGCATCC-CGTCTCT-C-T-GGCCGG
** *** *
5238594 C-TCTCTGGCCGACGTAGTGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
659 CGT-AGT-GCC--CG-CCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * ** * * * ** *
5238658 TCATTCCTAGTTTAAGTTTGGACCAGACCGAGGGTTACGGTAGCAAGATTAGTAGCACGCAGAGG
718 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGG
* * * * * ** *
5238723 GAGACCTGACCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCTTGCTGAGAGCCCGCACGCTCG
783 GGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* *
5238788 TTTCATAGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATGCAGAGTTGATTCCCAG
848 TTTCGTGGGTTGACTTAGGCATACG--G---------AG--T-----T-C-------ATTCCCAG
*
5238853 TCTGA
887 TCTAA
* * ** * *
5238858 GCATACGGAGTTGATTCCCAGTCTAAGATTGGACCAAACCGAGTGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
5238923 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCA---TC---G--T---CGGAGA
*
5238988 ACCTGACCGGCGGCATTGGGGTTCCGGCGATGGGGGGGCCGAGGGGGTGTGTGCGCACATGATGT
120 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCG-GGGGG-GTGTGCGCACATGATGT
* * * * * *
5239053 GTGATGGGTGCTAGTACTTGGCCCTTATATTAGCCCCTTATACCTCATCAAATCTCGAGAACTCA
183 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
5239118 CACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAA
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
5239183 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
5239248 TTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTGGGGCCAAAACTCATTCCGAAAA
378 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
5239312 AAATTAAAAAAATGCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCT
443 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * *
5239377 TACCATGAAACTTCACGTGAAGGCTTAAGGGACCATAGTACGATTTTACAAGCCATAAAAATGGC
508 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
5239442 ATTGGCGCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACAGTTTGT
573 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
5239507 GCATCCAGTCTCTCTGGCCGGTGTAGTGCTCGCCCG--C-CCACCTGCTCGTTTCGTCGATTGGC
638 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGC
* * * *
5239569 TTAGGCATACGGAGTTCATTCCCAGTCTAAGGTTAGACCAGACCGAGGGTTGCAGCAGGAGGATC
703 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
* * * * *
5239634 AGCAGCACGTAGAGGGGGACCCGACCGATCCCCCGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
768 GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* ** * * *
5239699 GCACCCGCACGCTCGTTTCGTGCTTTAACTTAGACATGCGGAGTTCATTCCCAGTCTAA
833 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * *
5239758 GGATACGGAGTTCATTCCCAGTCTAAGATCAGACTTGATCGAGTGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
5239823 CTCGAGCATGTGTTGATGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGCCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCAT--C----G--TCG--G-AGA
* * * *
5239888 ACCTGACCGACGGCATTGGGGTTCAGGCGATCGAAGGGGCCAGGGGGGGTGTGCCCACATGATGT
120 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCG-GGGGGCC-GGGGGGGTGTGCGCACATGATGT
* * *
5239953 GTGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
183 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
5240018 CACCCCCTTAAAAAGCATTTCAGATTTTACAGGGTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
5240083 TGGGGACACTTTTTTCAAATGGTCACAACATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTT
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * * * * **
5240148 GTGCACACCAAAAAAAATACAACGATCACGTCTTCCAAGTTTGGGGCCAAAACCCCTTTTGAAAA
378 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
5240213 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTCT
443 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
5240278 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
508 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
5240343 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTA-CGATCCAAC-GC-TG
573 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC-ACGGCTTG
* * ** ** * ** * * ** * *
5240405 CACGT-CC-T-TCGAGTGGCCGATGTAGTTAGCAACGTGACG-CAG-TGCTTGCTCGTTTCATTG
637 CGCATCCCGTCTC-TCTGGCCGGCGTAG-T-GC-CCG-CCCGCCCGCCGCCCGCTCGTTTCGTCG
* ** ** ** * * *
5240465 G-TGGTTTAGGCAT-TTGAGTTCATTTTCAGTCTATAGGATTCAGA-TTGAACGAGGTTGTGTAG
697 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA-A-GA-TCAGACCAGACCGAGGGT-TG-CG
* * * * * *
5240527 GCGGTCAGGAT--GCAGCACGTTAGAGGTGGACAGCGA-CGAT--CCTG-TTGTGCAAT-CCG--
757 GCAG-CAGGATCGGCAGCACG-CAGAGGGGGAC-CCGATCGATCCCCGGCTTGCGC-ATCCCGCC
* * * * *
5240583 CCTCTGG--GGAATGAGCACCCGCACGCTTGTTTTGTGCGTTGAC-TAGGCATACGGAGTTCATT
818 CCTCTGGCCGG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
5240645 CCCAGTCTAA
882 CCCAGTCTAA
* * ** * **
5240655 GTATACGAAGTTCAATTCCACA-TCTAAGATCGGACTAG-CCGAGGGTTACGATAGCAC-TGCTG
1 GCATACGGAGTTC-ATTCC-CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTG
* * * *
5240717 GGCTCGAGCATGTGTTGGTGCCGGGTAATTTTTCTTCCGTCG-GG--GCATCGTC-GAGAACCTG
64 GGCTCGGGCATGTGCTGGTGCC--G-CATTTTTCTT-CGTCGAGGCACCATCGTCGGAGAACCTG
* * ** * *
5240778 ACCGACGGCATTGGGGTTCTGATGATCGAAGGGGCAGGGTGGGGGTGTGCGCACATGATGTGCGA
125 ACCGGCGGCATTGGGGTTCCGGCGATCG-GGGGGC-CGG-GGGGGTGTGCGCACATGATGTGCGA
* * **
5240843 TGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAATGTCGAGAACTCACACC
187 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
5240908 CCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGGCATTAAAGTGTCTGAAATGGG
252 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
5240973 GACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCAAGTTTCTAGCTAAATTTTTTTGTGC
317 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * * * *
5241038 AAGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTTGGGCTAAAAATCCTTTCAAAAAAATT
382 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * * *
5241103 TTAAAAAATCCCAAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAAGGAGTCGTCTTGCC
447 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
5241168 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
512 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
5241233 GCACATAGAAATATGAAGATGTGGCTAAACGCACCTACCACCCTATCGATACACGGCTTGTGCAT
577 GCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* ** * * * *
5241298 CCCGTCTTTCTGGCCGATGTAGT----GCCCG--C-CCGCCCACTCATTTCGTTGGTTGGCATAG
642 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * ** *
5241356 GCATACGGAGTTCATTCCCAATTTAAGATCGGACCGGACCGAGGGTTGCGATAGCAGGATCGGTA
707 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * ** * *
5241421 GCACACAGAGGGGGACCC-ACCGATCCCCGACTTGCATATCCCGCCCCTCTGGTCGGCTGAGCAC
772 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
5241485 TCGCACGCTCGTTTCATGGGTCGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
5241540 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
5241605 CTCGGG-ATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCACCGGGGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCAT---C---G--T---CGGAGA
** * * *
5241669 ACCTGATAGGCGGCATTAGGGTTCTGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
120 ACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
5241733 CGATGGGTGCTGGTA-------C-----TTGGCCCCCTATCCCTCATCAAACCTCAAGAAGTCAC
184 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
5241786 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
249 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5241851 GGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCTGAATTTTTTGG
314 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
5241916 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTTCGAAAAA
379 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** * *
5241981 TTTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATATAAAACGAGTCGTCTT
444 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
5242046 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
509 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
5242111 CTGGCACCTAGAAATATGAAGATGT-CTTTAAACCCACCTACCACCCTATTGATCCACGGCTTGC
574 TTGGCACATAGAAATATGAAGATGTGC-CTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * ** * * *
5242175 ACATCCTGTCTCTCTAGCCGATGTAGTGCCCGCCCGTCTGCCCGGCCGCTCGTTTCGTCGGTTGG
638 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGG
* ** *
5242240 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACC-GAACCAAGGGTTGCAACAGTAGG
702 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAG-ACCGAGGGTTGCGGCAGCAGG
** *
5242303 ATCGGCAGCACGTGGAGGGGGACCCGA-CTGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGG
765 ATCGGCAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * * *
5242367 CTAAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATGCAGAGTACATTCCCAGTCTAA
829 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
5242430 GCATACGGAGTTCATTCCCAATCTAGGATTGGACCGGACCGAGAGTTGTGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
5242495 CTCGGGCATGTGTTGGTGTCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGG------CA-C----CATCGTCGGAGA
* * * * *
5242560 ACCTGATCGACGGCATTGGGGTT-CGGCGATCGAGAGGGTC-GGGGGGTGTG-ACACATGATGTG
120 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
5242622 CAATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTTGAGAACTTAC
184 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
5242687 ACCCCCTAAAAGACCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAACTGTCTGAAAT
249 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
5242752 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTG
314 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
5242817 TGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCGTCTGAAAAA
379 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
5242882 ATTTAAAAAAATCCCGAACC-TCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
444 ATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
5242946 TGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGC
508 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*** * *
5243011 ATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGT
573 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
5243076 GCATCCCGTCCCTCTGGCCGGCGTAGTGCCCGCCAGCCCGCCCGCTCACCCACTCGTTTCGTCGG
638 GCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCGC-CGCCCGCTCGTTTCGTCGG
* * * * *
5243141 TTGGCTTAGGCATATGGAGTTTATTACCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCA
698 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
* * * *
5243206 GGATCGACAGCACGCAGATGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCG
763 GGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
5243271 ACTGAGCACCCGCACGCTCATTTCGTGGGTTGAC-T-----T----AG----------G-CT--
828 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
5243312 ---TACGGAGTTCATTCCCCGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
5243374 CTCGGGCATGTGTTGGTGTCGCATTTTTCTTCG-CCAGGGCACCATCGCCGGAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGA-GGCACCAT---C---G--T---CGGAG
* * * *
5243438 AACCTGACCGACGGCATTGAGGTTCCGGCGATTGGGGGGCCGGGGGGGTGTGTGCACATGATGTG
119 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
5243503 CGATGGGTGCTGGTACTTGGCCCTTATATT-G-CCCCTATCCCTCATCAAACCTCGACAACTCAG
184 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
5243566 AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAAT
249 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
5243631 GGGGACACATTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
314 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
5243696 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT--GGCCAAAACTCCTTCCAAAAAA
379 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
5243759 ATTTCAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAAAGAAAATGAGTCGTCTT
444 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
5243824 GCCATGAAACTTCACGTGAAAGCTTAAGGGACCATCGTATGAATTGACAAGCCATAAAAATGGTA
509 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
5243889 TTGGCACACAGAAACATGAAGATGTACCTAAACCCACCTAC
574 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTAC
5243930 ATGAAGATGT
Statistics
Matches: 13245, Mismatches: 2572, Indels: 2292
0.73 0.14 0.13
Matches are distributed among these distances:
834 2 0.00
835 59 0.00
836 1 0.00
838 2 0.00
842 2 0.00
843 3 0.00
845 2 0.00
848 5 0.00
849 1 0.00
850 1 0.00
853 3 0.00
854 23 0.00
855 3 0.00
856 2 0.00
858 1 0.00
860 1 0.00
862 2 0.00
867 2 0.00
868 73 0.01
869 20 0.00
870 9 0.00
871 16 0.00
872 7 0.00
873 27 0.00
874 233 0.02
875 376 0.03
876 232 0.02
877 425 0.03
878 172 0.01
879 403 0.03
880 742 0.06
881 818 0.06
882 69 0.01
883 425 0.03
884 102 0.01
885 197 0.01
886 439 0.03
887 26 0.00
888 16 0.00
889 198 0.01
890 283 0.02
891 942 0.07
892 141 0.01
893 94 0.01
894 609 0.05
895 490 0.04
896 1072 0.08
897 94 0.01
898 54 0.00
899 41 0.00
900 432 0.03
901 649 0.05
902 154 0.01
903 315 0.02
904 78 0.01
905 293 0.02
906 37 0.00
907 15 0.00
908 41 0.00
909 15 0.00
910 31 0.00
911 13 0.00
912 15 0.00
913 13 0.00
914 10 0.00
915 11 0.00
916 20 0.00
917 27 0.00
918 42 0.00
919 15 0.00
920 8 0.00
921 10 0.00
922 8 0.00
923 4 0.00
924 14 0.00
925 2 0.00
926 177 0.01
927 7 0.00
928 8 0.00
929 5 0.00
930 11 0.00
931 12 0.00
932 9 0.00
933 21 0.00
934 44 0.00
935 26 0.00
936 45 0.00
937 43 0.00
938 30 0.00
939 57 0.00
940 19 0.00
941 34 0.00
942 42 0.00
943 21 0.00
944 32 0.00
945 28 0.00
946 27 0.00
947 20 0.00
948 16 0.00
949 10 0.00
950 2 0.00
951 5 0.00
952 16 0.00
953 9 0.00
954 9 0.00
955 17 0.00
956 9 0.00
957 13 0.00
958 7 0.00
959 21 0.00
960 17 0.00
961 12 0.00
962 11 0.00
963 19 0.00
964 10 0.00
965 13 0.00
966 15 0.00
967 16 0.00
968 27 0.00
969 17 0.00
970 11 0.00
971 7 0.00
972 13 0.00
973 6 0.00
974 8 0.00
975 2 0.00
976 2 0.00
977 13 0.00
978 7 0.00
979 9 0.00
980 8 0.00
981 12 0.00
982 12 0.00
983 3 0.00
985 2 0.00
986 5 0.00
987 9 0.00
988 9 0.00
989 4 0.00
990 9 0.00
991 3 0.00
992 9 0.00
993 180 0.01
994 9 0.00
995 3 0.00
996 3 0.00
997 11 0.00
998 9 0.00
1000 1 0.00
1001 4 0.00
1002 16 0.00
1003 14 0.00
1004 8 0.00
1005 1 0.00
1006 4 0.00
1007 10 0.00
1008 15 0.00
1009 8 0.00
1010 10 0.00
1011 5 0.00
1012 17 0.00
1013 13 0.00
1014 5 0.00
1015 7 0.00
1016 5 0.00
1017 1 0.00
1018 1 0.00
1019 35 0.00
1022 1 0.00
1023 11 0.00
1024 551 0.04
1025 407 0.03
1026 277 0.02
1027 330 0.02
1028 308 0.02
1029 279 0.02
1030 370 0.03
1031 309 0.02
1032 290 0.02
1033 849 0.06
1034 272 0.02
1035 213 0.02
1036 288 0.02
1037 456 0.03
1038 301 0.02
1039 258 0.02
1040 1070 0.08
1041 492 0.04
1042 291 0.02
1043 344 0.03
1044 206 0.02
1045 491 0.04
1046 369 0.03
1047 168 0.01
1048 696 0.05
1049 666 0.05
1050 161 0.01
1051 290 0.02
1052 241 0.02
1053 228 0.02
1054 219 0.02
1055 155 0.01
1056 180 0.01
1057 107 0.01
1058 264 0.02
1059 81 0.01
1060 101 0.01
1061 149 0.01
1062 302 0.02
1063 189 0.01
1064 164 0.01
1065 102 0.01
1066 203 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (891 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGAACCTGACCGGC
GGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
CCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
GGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5230676 original size:158 final size:159
Alignment explanation
Indices: 5230318--5230692 Score: 490
Period size: 159 Copynumber: 2.4 Consensus size: 159
5230308 TCGCCCGCCT
* * * * * * *
5230318 GCCCGCCCGCTCTTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCACTCTAAGATCGGAC
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGAC
* * ** ** *
5230383 CGGACAGAGGGTTGTGGCAGCAGGATTGACAACACGTAGAGGGGGACCCGATCGATCCCCGGGTT
66 CGGACAGAGGGTTGCGGCAGCAAGATTGACAACACACAGAGGGGGACCCGATCGATCCCCGACTC
*
5230448 GCGCATCCACCCCCTCTACCGTACTGAGC
131 GCACATCCACCCCCTCTACCGTACTGAGC
*
5230477 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCCGAC
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGAC
* *
5230542 CGGACCGAGGGTTGCGGCAGCAAGATTGACAACACACAGAGGGTG-CCCGA-CAGATCCCCGACT
66 CGGACAGAGGGTTGCGGCAGCAAGATTGACAACACACAGAGGGGGACCCGATC-GATCCCCGACT
* *
5230605 CGCACATCTC-GCCCCTCTGGCCG-ACTGAGC
130 CGCACATC-CACCCCCTCT-ACCGTACTGAGC
*
5230635 AG-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG
1 -GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
5230693 CATACGGAGT
Statistics
Matches: 190, Mismatches: 22, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
157 1 0.01
158 88 0.46
159 101 0.53
ACGTcount: A:0.20, C:0.31, G:0.28, T:0.21
Consensus pattern (159 bp):
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGAC
CGGACAGAGGGTTGCGGCAGCAAGATTGACAACACACAGAGGGGGACCCGATCGATCCCCGACTC
GCACATCCACCCCCTCTACCGTACTGAGC
Found at i:5232434 original size:26 final size:26
Alignment explanation
Indices: 5232382--5232434 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5232372 GTTGACTTAG
* * *
5232382 GCATACGGATTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
5232408 GCATACGGAGTTCCTTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5232434 G
1 G
5232435 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Done.