Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 39 of 129
Found at i:5234190 original size:26 final size:26
Alignment explanation
Indices: 5234154--5234206 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5234144 GTTGACTTAG
*
5234154 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5234180 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5234206 G
1 G
5234207 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5236859 original size:25 final size:26
Alignment explanation
Indices: 5236824--5236873 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
5236814 GTTGACTTAG
5236824 GCATACAGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5236849 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
5236874 GATTGGATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5237047 original size:25 final size:26
Alignment explanation
Indices: 5237008--5237057 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 26
5236998 TGACTTAGGG
5237008 ATACAGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
5237034 ATACAGA-TTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
5237058 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:5237932 original size:26 final size:25
Alignment explanation
Indices: 5237896--5237974 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 25
5237886 GTTGACTTAG
5237896 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
5237922 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
5237948 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACG-AGTTCATTCCCAGTCTAA
5237974 G
1 G
5237975 ATCAGACCGG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
25 1 0.02
26 50 0.98
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:5238843 original size:26 final size:26
Alignment explanation
Indices: 5238806--5238884 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
5238796 GTTGACTTAG
*
5238806 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTGATTCCCAGTCTAA
* *
5238832 GCATGCAGAGTTGATTCCCAGTCTGA
1 GCATACAGAGTTGATTCCCAGTCTAA
*
5238858 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACAGAGTTGATTCCCAGTCTAA
5238884 G
1 G
5238885 ATTGGACCAA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 45 0.98
27 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTGATTCCCAGTCTAA
Found at i:5240667 original size:26 final size:27
Alignment explanation
Indices: 5240631--5240682 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
5240621 TTGACTAGGC
*
5240631 ATACGGAGTTC-ATTCC-CAGTCTAAGT
1 ATACGAAGTTCAATTCCACA-TCTAAGT
5240657 ATACGAAGTTCAATTCCACATCTAAG
1 ATACGAAGTTCAATTCCACATCTAAG
5240683 ATCGGACTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 10 0.43
27 11 0.48
28 2 0.09
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (27 bp):
ATACGAAGTTCAATTCCACATCTAAGT
Found at i:5241544 original size:26 final size:26
Alignment explanation
Indices: 5241514--5241566 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5241504 GTCGACTTAG
*
5241514 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5241540 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5241566 G
1 G
5241567 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5241990 original size:881 final size:883
Alignment explanation
Indices: 5236849--5243929 Score: 7509
Period size: 901 Copynumber: 7.9 Consensus size: 883
5236839 CCCAGTCTAA
* * * * ** *
5236849 GCATACGGAGTTCATTCCCAGTCT-AGATTGGATCGAACAGAGGGTTGCGGTTAGCAGGATCGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GACAGCAGGATCGGC
* * * *** * * * * *
5236913 AGCTCGTAGAGGAGGACCGGTCGATTCCCACTT-C-CAATCTCACCCCTCTGGCCTGCTGAGCAC
65 AGCACGCAGAGGGGGACCCACCGATCCCCGCTTGCGC-ATCCCGCCCCTCTGGCCGGCTGAGCAC
* * * *
5236976 TCGCACGCTCAGTTTCGTGGGTTGACTTAGGGATACAGAGTTCATTCCCAGTCTAAGCATACAGA
129 CCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * *
5237041 -TTCATTCCCAGTCTAAGATC-GAACCAGACCGAGGGTTGCAACAGCACATGCTGGGCTCGAGCA
193 GTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
* **
5237104 TGTGTT-GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA-CATTACCGGGAGAACCTGAA
257 TGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCC-GGAGAACCTG-A
* * * * * * * * *
5237167 CCGGCGGCATTAGGGTTTC-GCGATCGGGGGTGCTGGAGCGGT-TGCGCACAAGATGTGTGAAGG
320 CCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGG
* * * *
5237230 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTACCCCTCATCAAATCGCGAGAACTCGCA-CCCC
384 GTGCTGGTA------CC---T-TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
5237294 TTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTAAAATGGGGAC
439 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* **
5237359 ACTTTTTTCAAATGGTCAC-AAATCTTGGTACACTTTGAGTTTTTTAGCTGAATACTTTTGTGCA
504 ACTTTTTTCAAATGGTCACAAAATCTT-GTACACTTCGAG-TTTTTAGCTGAATTTTTTTGTGCA
*
5237423 TCGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAAT
567 T-GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG-AAAAAA-
* * *
5237488 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAATCATGAAAAAACAGAAAACGAGTTGTCT
629 TTTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAAATCATG-AAAAATAGAAAACGAGTCGTCT
*
5237553 TGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGC
692 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** *
5237618 ATTGGAATGCAGAAATATGAAGATGTACCTAAACCCACC-ACCACCCTAATC-ATCCACGGCTTG
757 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT-ATCGATCCACGGCTTG
* * ** * *
5237681 CGCATCCCATCTCTCTGGCCGGCGTAGTGCCCACCCGCTCGTCTGCTCGTTTCGTCGGTTGGATT
821 TGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGC-C--C-GCTCGTTTCGTCGGTTGGCTT
5237746 AG
882 AG
** * * * * * *
5237748 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGAACTGAGGGTTAC-AGCAGCAAGATTGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCAGGATCGGC
* * * *
5237812 A-CACACAGA--GGGA-CCGCCGATCCCTGCTTACGCAT-CC-CCCCTCT-GCCGGCT-AGCACC
65 AGCACGCAGAGGGGGACCCACCGATCCCCGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACC
*
5237869 CG-ACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGT
130 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-T--A-AG-
* *
5237933 TCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACG
185 -CA-T---A--C---G-----G-AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCG
* * * *
5237998 ACAGCACATGCTGGGCTCGGGCA--TGTTGCT--CGTATTTTTCTTCATCGGGGCACCATCGTCG
234 ACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCG
* * * ** * *
5238059 GAGCATC-CCGAAGAACCTGACCAATGGCATT-GGGTTCCGATGATC-GGGGGGTC---GCGTGT
299 GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGT
*
5238118 GCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
364 GCGCACATGATGTGCGATGGGTGCTGGTA------CC---T-TTGGCCCCCTATCCCTCATCAAA
* * *
5238183 CCTTGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATT
419 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
5238248 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGA-TTTTTT
484 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * * *
5238312 GATGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGTCAAAA
549 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* ** **
5238377 CTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGA
614 CTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
* *
5238442 AAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAG
679 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
** * *
5238507 CCATAAAAATACCATTGGCACACAAAAATAT-AGAGATGTGGCTAAACCCACCTACCACCCTATC
744 CCATAAAAATGGCATTGGCACACAGAAATATGA-AGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
5238571 GATCCACGGCTTGCGTATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCTCGTTTCGTC
808 GATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCTCGTTTCGTC
5238636 GGTTGGCTTAG
873 GGTTGGCTTAG
* * * * * * ** * ** *
5238647 GCATACGGAGTTCATTCCTAGTTTAAGTTTGGACCAGACCGAGGGTTACGGTAGCAAGATTAGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGGCA
* * * * **
5238712 GCACGCAGAGGGAGACCTGACCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCTTGCTGAG-AG
66 GCACGCAGAGGGGGACC-CACCGATCC-CCGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA-
* * * * *
5238776 CCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATGCAGA
128 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * *
5238841 GTTGATTCCCAGTCTGAGCATACGGAGTTGATTCCCAGTCTAAGATTGGACCAAACCGAGTGTTG
193 GTTCATTCCCAGTCTAAG-AT-C--A---GA----C---C-------GG-----ACCGAGGGTTG
* * *
5238906 CGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGT
232 CGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC
*
5238971 CGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGAT-GGGGGGGCCGAGGGGG
297 CGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC--GGGGG
* * * * *
5239035 TGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTAGCCCCTTATACCTCA
360 -GTGTGCGCACATGATGTGCGATGGGTGCTGGTA------CC---T-TTGGCCCCCTATCCCTCA
* * *
5239100 TCAAATCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAG
414 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
5239165 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
479 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
5239230 TTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTGGGGC
544 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * * *
5239294 CAAAACTCATTCCGAAAAAAATTAAAAAAATGCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
609 CAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAA
* * * * *
5239359 ATAGAAAATGAGTCGTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATAGTACGATTTT
674 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
5239424 ACAAGCCATAAAAATGGCATTGGCGCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
739 ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * *
5239489 TATTGATCCACAGTTTGTGCATCCAGTCTCTCTGGCCGGTGTAGTGCTCGCCCGCCCACCTGCTC
804 TATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCG--C-CC-GCTC
*
5239554 GTTTCGTCGATTGGCTTAG
865 GTTTCGTCGGTTGGCTTAG
* ** * * *
5239573 GCATACGGAGTTCATTCCCAGTCTAAGGTTAGACCAGACCGAGGGTTGC-AGCAGGAGGATCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCAGGATCGGC
* *
5239637 AGCACGTAGAGGGGGACCCGACCGATCCCCCGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCA
65 AGCACGCAGAGGGGGACCC-ACCGAT-CCCCGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
** * * * *
5239702 CCCGCACGCTCGTTTCGTGCTTTAACTTAGACATGCGGAGTTCATTCCCAGTCTAAGGATACGGA
128 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
** * * * *
5239767 GTTCATTCCCAGTCTAAGATCAGACTTGATCGAGTGTTACGACAGCACATGCTGGGCTCGAGCAT
193 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAT
* * * *
5239832 GTGTTGATGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGCCGAAGAACCTGACCG
258 GTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCG
* ** * *
5239897 ACGGCATTGGGGTTCAGGCGATCGAAGGGGCCAGGGGGGGTGTGCCCACATGATGTGTGATGGGT
323 ACGGCATTGGGGTTCCGGCGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGT
*
5239962 GCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
386 GCTGGTA-------C--CT-TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
5240027 AAAAAGCATTTCAGATTTTACAGGGTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
441 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * **
5240092 TTTTTTCAAATGGTCACAACATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTGTGCACACC
506 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
5240157 AAAAAAAATACAACGATCACGTCTTCCAAGTTTGGGGCCAAAACCCCTTTTGAAAAAATTTTAAA
571 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAA
* * * *
5240222 AAATCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAA
636 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
5240287 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
701 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
* ** *
5240352 CAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTA-CGATCCAAC-GC-TGCACGT-CC-
766 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC-ACGGCTTGTGCATCCCG
** ** ** * * *
5240412 T-TCGAGTGGCCGATGTAGTTAGCAACGTGACGCAGTGCTTGCTCGTTTCATTGG-TGGTTTAG
830 TCTC-TCTGGCCGATGTAG-T-GC--C----CGC-CCGCCCGCTCGTTTCGTCGGTTGGCTTAG
** ** * ** * * *
5240474 GCAT-TTGAGTTCATTTTCAGTCTATAGGATTCAGA-TTGAACGA-GGTTGTGTAGGCGGTCAGG
1 GCATACGGAGTTCATTCCCAGTCTA-A-GA-TCGGACCGGACCGAGGGTTGCG-A--CAG-CAGG
* * * * *
5240536 AT--GCAGCACGTTAGAGGTGGACAGCGA-CGAT-CCTG-TTGTGCAAT-CCG--CCTCTGG--G
59 ATCGGCAGCACG-CAGAGGGGGAC--CCACCGATCCCCGCTTGCGC-ATCCCGCCCCTCTGGCCG
* * * *
5240591 GAATGAGCACCCGCACGCTTGTTTTGTGCGTTGAC-TAGGCATACGGAGTTCATTCCCAGTCTAA
120 G-CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * *
5240655 GTATACGAAGTTCAATTCCACA-TCTAAGATCGGACTAG-CCGAGGGTTACGATAGCAC-TGCTG
184 GCATACGGAGTTC-ATTCC-CAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTG
* * *
5240717 GGCTCGAGCATGTGTTGGTGCCGGGTAATTTTTCTTC--C---G-----TCG--GG-GCATCGTC
247 GGCTCGGGCATGTGTTGGTGCC--G-CATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCC
* ** ** *
5240769 -GAGAACCTGACCGACGGCATTGGGGTTCTGATGATCGAAGGGGCAGGGTGGGGGTGTGCGCACA
309 GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGC--CG-GGGGGTGTGCGCACA
* * **
5240833 TGATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAATGTCGAG
371 TGATGTGCGATGGGTGCTGGTA------CC---T-TTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
5240898 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGGCATTAAAGTGT
426 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * *
5240963 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCAAGTTTCTAGCTAAAT
491 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * * * *
5241028 TTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTTGGGCTAAAAATCCTTT
556 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT
* * * * * *
5241093 CAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAAGGAG
621 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
5241158 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
686 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * *
5241223 AATGGCATTGGCACATAGAAATATGAAGATGTGGCTAAACGCACCTACCACCCTATCGATACACG
751 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
5241288 GCTTGTGCATCCCGTCTTTCTGGCCGATGTAGTGCCCGCCCGCCCACTCATTTCGTTGGTTGGCA
816 GCTTGTGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
5241353 TAG
881 TAG
* * * *
5241356 GCATACGGAGTTCATTCCCAATTTAAGATCGGACCGGACCGAGGGTTGCGATAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGGCA
* ** * *
5241421 GCACACAGAGGGGGACCCACCGATCCCCGACTTGCATATCCCGCCCCTCTGGTCGGCTGAGCACT
66 GCACGCAGAGGGGGACCCACCGATCCCCG-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACC
* *
5241486 CGCACGCTCGTTTCATGGGTCGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
130 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * *
5241551 TCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGCGATAGCACATGCTGGGCTCGGG-ATGT
195 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGT
* * * * * ** *
5241615 GCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCACCGGGGCATCACCGGAGAACCTGATAGGC
260 GTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGAC
* * *
5241680 GGCATTAGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
325 GGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
5241745 GTA-C-TTGGCCCCCTATCCCTCATCAAACCTCAAGAAGTCACACCCCCTTAAAGAGCATTTGAG
390 GTACCTTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
5241808 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGT
455 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
5241873 CACAAAATCTTCTACACTTCGAGTTTTTAGCTGAATTTTTTGGTGCATGCCAAAAAAAATACAAG
520 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
* * **
5241938 GATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTTCGAAAAATTTTTAAAAAATCTTGAACCGT
585 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGT
* * *
5242003 AAAAAGTTTCAAAAATCGTGAAAAATATAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGG
650 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
5242068 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCAC-CTAGAAATATGAAG
715 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC-AGAAATATGAAG
* * ** * *
5242132 ATGT-CTTTAAACCCACCTACCACCCTATTGATCCACGGCTTGCACATCCTGTCTCTCTAGCCGA
779 ATGTGC-CTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGA
5242196 TGTAGTGCCCGCCCGTCTGCCCGGCCGCTCGTTTCGTCGGTTGGCTTAG
843 TGTAGTGCCCG-CC--C-G--C--CCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
5242245 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCAAGGGTTGCAACAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGGCA
** * * *
5242310 GCACGTGGAGGGGGACCCGACTGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTAAGCAC
66 GCACGCAGAGGGGGACCC-ACCGATCCCC-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
* * * *
5242375 CCGTACGCTCGTTTCGTGGGTTGACTTAGGCATGCAGAGTACATTCCCAGTCTAAGCATACGGAG
129 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * ** * * * *
5242440 TTCATTCCCAATCTAGGATTGGACCGGACCGAGAGTTGTGGCAGCACATGTTGGGCTCGGGCATG
194 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATG
* * * * * *
5242505 TGTTGGTGTCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGATCGA
259 TGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA
* * * * *
5242570 CGGCATTGGGGTT-CGGCGATCGAGAGGGTCGGGGGGTGTG-ACACATGATGTGCAATGGGTGCT
324 CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
5242633 GGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTTGAGAACTTACACCCCCTAAAA
389 GGTA------CC-T-T--TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
5242698 GACCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAACTGTCTGAAATGGGGACACTTT
444 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
5242763 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAAA
509 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * *
5242828 AAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-GTCTGAAAAAATTTAAAAAA
574 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAA
5242892 ATCCCGAACC-TCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
638 ATCCCGAACCGT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* **
5242956 CTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
702 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
*
5243021 AGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTC
767 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTC
* **
5243086 CCTCTGGCCGGCGTAGTGCCCGCCAGCCCGCCCGCTCACCCACTCGTTTCGTCGGTTGGCTTAG
832 TCTCTGGCCGATGTAGTG--C-CC-GCCCGCCCG--------CTCGTTTCGTCGGTTGGCTTAG
* * * * * * *
5243150 GCATATGGAGTTTATTACCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGGCA
* * *
5243215 GCACGCAGATGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGACTGAGCAC
66 GCACGCAGAGGGGGACCC-ACCGATCCCC-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
*
5243280 CCGCACGCTCATTTCGTGGGTTGAC-T-----T----AG----------G-CT-----TACGGAG
129 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * *
5243319 TTCATTCCCCGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGATGCTGGGCTCGGGCATG
194 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATG
* * * *
5243384 TGTTGGTGTCGCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGA
259 TGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA
* * *
5243449 CGGCATTGAGGTTCCGGCGAT-TGGGGGGCCGGGGGGGTGTGTGCACATGATGTGCGATGGGTGC
324 CGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * * *
5243513 TGGTACTTGGCCCTTATATTG-CCCCTATCCCTCATCAAACCTCGACAACTCAGAACCCCTTAAA
388 TGGTA------CC-T-T-TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
5243577 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGGGACACATT
444 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
5243642 TTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAA
509 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * *
5243707 AAAAATACAAGGATCACGTCTACCAAGTTT--GGCCAAAACTCCTTCCAAAAAAATTTCAAAAAA
574 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAA
* *
5243770 TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAAAGAAAATGAGTCGTCTTGCCATGAAACT
639 TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * *
5243835 TCACGTGAAAGCTTAAGGGACCATCGTATGAATTGACAAGCCATAAAAATGGTATTGGCACACAG
704 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAG
* *
5243900 AAACATGAAGATGTACCTAAACCCACCTAC
769 AAATATGAAGATGTGCCTAAACCCACCTAC
5243930 ATGAAGATGT
Statistics
Matches: 5306, Mismatches: 649, Indels: 476
0.83 0.10 0.07
Matches are distributed among these distances:
877 175 0.03
878 12 0.00
879 338 0.06
880 31 0.01
881 478 0.09
882 32 0.01
883 25 0.00
884 64 0.01
885 121 0.02
886 434 0.08
887 11 0.00
888 7 0.00
889 122 0.02
890 220 0.04
891 80 0.02
892 10 0.00
893 43 0.01
894 11 0.00
895 22 0.00
896 73 0.01
897 73 0.01
898 58 0.01
899 140 0.03
900 385 0.07
901 644 0.12
902 145 0.03
903 78 0.01
904 58 0.01
905 190 0.04
906 54 0.01
907 30 0.01
908 79 0.01
909 98 0.02
910 83 0.02
911 11 0.00
912 19 0.00
913 9 0.00
914 71 0.01
915 29 0.01
916 20 0.00
917 56 0.01
918 1 0.00
919 2 0.00
921 1 0.00
922 404 0.08
923 55 0.01
924 2 0.00
925 4 0.00
926 195 0.04
927 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (883 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGGCA
GCACGCAGAGGGGGACCCACCGATCCCCGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTG
TTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACG
GCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACCTTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTA
AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT
GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGATGT
AGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:5243938 original size:26 final size:26
Alignment explanation
Indices: 5243902--5243951 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
5243892 GCACACAGAA
5243902 ACATGAAGATGTACCTAAACCCACCT
1 ACATGAAGATGTACCTAAACCCACCT
5243928 ACATGAAGATGTACCTAAACCCAC
1 ACATGAAGATGTACCTAAACCCAC
5243952 GGTTGCGGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.40, C:0.30, G:0.12, T:0.18
Consensus pattern (26 bp):
ACATGAAGATGTACCTAAACCCACCT
Found at i:5244653 original size:26 final size:26
Alignment explanation
Indices: 5244617--5244669 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5244607 GTTGACTTAG
*
5244617 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5244643 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5244669 G
1 G
5244670 AATGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5245546 original size:26 final size:26
Alignment explanation
Indices: 5245510--5245562 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
5245500 GTTGACTTTG
5245510 GCATACGGAGTTCATTCCCCA-TCTAA
1 GCATACGGAGTTCATT-CCCAGTCTAA
*
5245536 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5245562 G
1 G
5245563 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5251216 original size:903 final size:902
Alignment explanation
Indices: 5246352--5253332 Score: 8715
Period size: 888 Copynumber: 7.8 Consensus size: 902
5246342 TCTATCCAAC
* * * * *
5246352 GGTTACGGTAGCACATGCTGGCCTCAAGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACC
1 GGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACC
* * * * *
5246417 ATCGTAGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-G
66 ATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGTATTGGGGTTCCGACGATC-GGGAGGCCGG
* * * * * * *
5246481 AGGGGTGTGCACACATGATATGTGATGGGTGCTGGAATTTGGCCCTTATATTGGCCCCCTATCAC
130 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
5246546 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
195 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
5246611 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCG
260 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
5246676 AGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-G
325 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* ** * *
5246740 GAGCCAAAAAT-AATTCTGAAAAAATTTTAAAAAAT-CTCAAACCGCAAAAA-TCTCAAAAATCA
390 GA-CCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCA
* * * *
5246802 TGAAAAATAAAAAATGAGTCA-TCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTCTA
452 TGAAAAATAGAAAACGAGT-AGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
5246866 TGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT
516 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * * * * * *
5246931 ACCACCCTATCGATCCAAGGCTTGCGCTTCCCGTCTCTCTAGCTGGCGTAATGCTCGCTCGCCCG
581 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTCCG
* * * *
5246996 CCTGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT-TGTAC
646 CCT-CCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-AC
* * * * * * *
5247060 CAGACCGAGGGTTGTGGCAGCAAGATCAATAGCACGCAGAGGGGGACCCGACCGATCCCCGACTT
709 CGGACTGAGGGTTGCGACAGCAGGATCGATAGCACGCAGAGGGGGACCCGACGGATCCCCGACTT
* ** ** * * **
5247125 GTGCATCCCGCCCCTC-GATCGGCTGAGCGCTTGTACGCTCGTTTTATGGGTTGACCGAGGCATA
774 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
** * * *
5247189 TAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCAGACCGGACCAAG
839 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * *
5247253 GGTTGCAGCAACACATGCTGGGCTC-GAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCAC
1 GGTTGCGGCAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCAC
* * * *
5247317 CATCGCCGGAGCATCACCGGAGAACCTGACCTTG-GGTTTTGGGGTTCCGACGATCGGGGAGGCC
65 CATCGTCGGAGCATCGCCGGAGAACCTGACC-GGCGGTATTGGGGTTCCGACGATC-GGGAGGCC
* * * **
5247381 GGGGGGGTGTGCGTACAGGATGCGCGATGGGTGCTGGTACTTGGTGCTTATATTGGCCCCCTATC
128 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
5247446 CCTCAGCAAACCTCGAGAACTCACACCCCCTTAAAAAGCGTTTGAGATTTTTCAGGTTTGCTGCC
193 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
5247511 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTT
258 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
5247576 CGAGTTTTTAGCTGAACTTTTTTGTGCATGCCAACAAAAATACAAAGATCACGTCTACCAAGTTT
323 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* ** * * * *
5247641 -GGAGCCAAAAATAGTTTTGAAATAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTCAAAAATA
388 GGGA-CCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATC
* *
5247704 ATGAAAAATAGAAAATGAGTCA-TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGT
451 ATGAAAAATAGAAAACGAGT-AGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
5247768 ATGAATTTACAAGCCATAAAAATGCCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACC
515 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * *
5247833 TACCACCCAATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCC
580 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTCC
*
5247898 GCCTGCACTCACGCTCGTTCCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-
645 GCCT-C-C-CA--CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * ** * * * * ** **
5247962 AGGACCAGACCGAGGGTTGGGGTAGTAGGATTGACAGCATGCAGAGGGGGTGCCGATAGATCCCC
705 A-GACCGGACTGAGGGTTGCGACAGCAGGATCGATAGCACGCAGAGGGGGACCCGACGGAT-CCC
* ** * * *
5248027 CG-CTTGCGCAACCTACCCCTCTGGTCGGCTGAGTGCCCGCACGCTTGTTTCATGGGTTGACTTA
768 CGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTA
* * * * * *
5248091 GGAATACAGAGTTCATTCCCATTCTAAGCATACGGAATTTATTCCCAGTC-AAGATCGGACCAGA
833 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
5248155 CCGAG
898 CCGAG
* * * * *
5248160 GGTTGCGGCAGCACATGTTGGGCTCGGGCTTGTGATGGTGCCGCATTTTTCTTC-GCTGGGGCAC
1 GGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATC-GGGGCAC
* * * * * *
5248224 CATCGTCGGAGCATTGCCGGAGAACCTGACCGACGACATATT--GGTTCCGACGATTGGGGGGTT
65 CATCGTCGGAGCATCGCCGGAGAACCTGACCGGCG--GTATTGGGGTTCCGACGATCGGGAGG-C
5248287 C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
127 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * *
5248351 CCCTCATCAACCCTCGAGAACTCACACCCCCTTAAAAACCATTTGAGATTTTATAGGTTTGCTGC
192 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
5248416 CTGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAGATCTTGTACACT
257 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
** * *
5248480 TCGAGTTTTTAGCAAAATTTTTTTGTGCATTCCAACAAAAATACAAGGATCACGTCTACCACGTT
322 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * *
5248545 TGGGGCC-AAACTCCATCCGAAAAAATTTTAAAAAAT-CTCGAATCC-CAAAAAGTTTCAAAAAT
387 TGGGACCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCT-GAA-CCGCAAAAAGTTTCAAAAAT
* * * * *
5248607 CCTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACCTGAAGGTTTAAGGGACCACTGT
450 CATGAAAAATAGAAAACGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
5248672 ATGAATTTACAAGCCAT-AAAATGGCATTGGCACGTAG-AATATGAAGATGTGCCTAAACCCACC
515 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * ** * **
5248735 TACCACCCTATCGATCCATGGCTTACGCATCTAGTCTCTCAGGCCGGCATAGTGCCCGCCC-T-C
580 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTCC
* * * *
5248798 -CCGCCCTCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTTTAAGATCAGACC
645 GCCTCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * * *
5248862 GGACCGAAGGTTGCGGCAGCAGGATCG---GTA-GC--------ATCC-A--GATCCCTGGCTTG
710 GGACTGAGGGTTGCGACAGCAGGATCGATAGCACGCAGAGGGGGACCCGACGGATCCCCGACTTG
* * * * * *
5248912 CGCATCCCGCCCTTCTGGCCGGCTGAGCACCCACACACTCATTTCATGGGTTGACTTAGGAATAC
775 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
*
5248977 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC-AAGAGCAGACCAGACCGAG
840 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * * *
5249039 GGTTGCAGCAGCACATGCTGGGCTC-GGTCTTGTGATGGTGCGGCATTTTTCTTCA-CTAGGGCA
1 GGTTGCGGCAGCACATGCTGGGCTCAGG-CATGTGCTGGTGCCGCATTTTTCTTCATC-GGGGCA
* * * ** * *
5249102 CCATCGTCGGAGCATTGCCGGAGAACCTAACCGACGGTATTTTGGTTCCGATGATCGGAGGGGCC
64 CCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGTATTGGGGTTCCGACGATCGG-GAGGCC
* **
5249167 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCCGTC
128 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
5249232 CCTCATCAAACCTCGAGAAATCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
193 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
5249297 AGTAGCCCTTAAAGTGTTTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
258 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * *
5249362 CAAGTTTTTAGATCAATTTTTTTGTGCATGCCAAAAAAAATATAAGGATCACGTCTACCAAGTTT
323 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * * * * * **
5249427 GGGGCCAAAACTTCTTCCAAAAAAATTTTAAAAATTCCCGAACCACAAAAATTTTCAAAAATGGT
388 GGGACCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCAT
* *
5249492 GAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATG
453 GAAAAATAGAAAACGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
5249557 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATTAAGATGTGCCTAAACCCACCTAC
518 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
5249622 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGACC-GTCGTAGTG-CC-CAC--CCG-
583 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGT-GTAGTGCCCGCCCGTCCGC
* * **
5249681 --CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGG
647 CTCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * * * * **
5249744 ACTGAGGGTTGCAACAGCAGGATCGATAGCATGCAGAGGGGGACCCAACTGATCCTC-AGCTAAC
712 ACTGAGGGTTGCGACAGCAGGATCGATAGCACGCAGAGGGGGACCCGACGGATCCCCGA-CTTGC
* * * *
5249808 GCATCCTGCCCCTCTGGCCGACTGAACGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACG
776 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
* * * * * *
5249873 GAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTGCCAGACTATGATCAAACCGGACCGAG
841 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * * * * * ** * *
5249935 GGTTACGGCTGCACATGCTAGGCTCGGGCTTGTGCTAGTGTCGCATTTTTCTTTGTCGGGGTATC
1 GGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACC
* ** * *
5250000 ATCGTCGAAGCATCGTTGGAGAACCTGACCGGCGGCATTGGGGTTCCG--G-T---GA--TCGGG
66 ATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGTATTGGGGTTCCGACGATCGGGAGGCCGGG
* * *
5250057 GGGGCCGTGCGCAGATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCC
131 GGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
5250122 TCATCAAACCTCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
195 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
5250187 TAGCCATTAAAGTGTCTGAAATGGGGGCACTTTTTCCAAATAGTCACAAAATCTTGTACACTTCG
260 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
5250252 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAATTACAAGGATCACGTCTACCAAGTTTGG
325 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * *
5250317 GACCAAAACTCTTTTCAAAAAAATTTTAAAAAATCCTGAACTGCAAAAAGTTTTAAAAATCGTGA
390 GACCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGA
*
5250382 AAAATAGAAAACGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGG-GCATTGTATGA
455 AAAATAGAAAACGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG-GGACCATTGTATGA
* * *
5250446 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATGTGAAGCTGTGCCTAAACCCACCTACC
519 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
** *
5250511 ACCCTATCGATAAACAGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTCCGCCC
584 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTCCG-CC
*
5250576 TCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
648 TCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* ** ** * * *
5250641 CTGAGTGTTATGACAGCAGGATCGGCAGCACGCAGAGCGGGACCCGACGGATCCCCGATTTGTGC
713 CTGAGGGTTGCGACAGCAGGATCGATAGCACGCAGAGGGGGACCCGACGGATCCCCGACTTGCGC
* * * * *
5250706 ATCCGGCCCCTTTGGTCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GA
778 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
* * **
5250770 GTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCTGTCTAAGATTGGACCAGACCGAG
843 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * *
5250830 GGTTGTGGCAGCACATGCTGGGCTCAGGCATGTTCTGGTGCCGTATTTTTCTTCATCGGGGCACC
1 GGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACC
** * * * * *
5250895 ATCACCGGAGCATCGTCGGAGAACCCGACCGGTGGTATTGGGGCTCCGATGATCGGGAAGGCCGG
66 ATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGTATTGGGGTTCCGACGATCGGG-AGGCC-G
*
5250960 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCGATCC
129 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * * * *
5251024 CTTATCGAACCTCGAGAACTCACACTCCCTTAAAAAGCATTTGAGATTTTACAGGCTTGCTGCCA
194 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
5251089 GTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
259 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
5251154 GAGTTTTTAGCTCAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTA
324 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-
* * **
5251219 GGGGA--AAAACTCC-TTCAGAAAAAATTTTAAAAAATCCCT-AACCACAAAAATTTTTGAAAAT
388 -GGGACCAAAACTCCTTTC-GAAAAAATTTTAAAAAAT-CCTGAACCGCAAAAAGTTTCAAAAAT
* * *
5251280 CATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGT
450 CATGAAAAATAGAAAACGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
5251345 ATGAATTTGCAAGCCATAAAAATGGAATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
515 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * *
5251410 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGATGAAGTGCCCG--C--CC
580 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTCC
* ** *
5251471 G-------CTCGTTTCGTCGGCTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATC
645 GCCTCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * ** * ** *
5251529 GGACTGAGGGTTG-TAGTAGCAGGATCGATAGCACATAAAGGGGGACCCGGTGGATCCCCGGCTT
710 GGACTGAGGGTTGCGA-CAGCAGGATCGATAGCACGCAGAGGGGGACCCGACGGATCCCCGACTT
* *
5251593 GCGCATCCCGCCCCACTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
774 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
* * ** **
5251658 CGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGAATGAG
839 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * ** * *
5251722 GGTTGCGACAGTACATGCTACGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCA-CTGGGGCAG
1 GGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATC-GGGGCAC
* * * * * * **
5251786 CATCGTCGGAGCATCGTCGGAGAATCTGACCGACGGTATTGGGGTTCCGGCGGTCGGGGGGCCAA
65 CATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGTATTGGGGTTCCGACGATCGGGAGGCCGG
* * * *
5251851 GGGGGTGTGCGCACATGATGTGCGATGTGTGCTGGAACTGGGCCCTTATATTAGCCCCCTATCCC
130 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
5251916 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAG
195 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
5251981 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCG
260 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
5252046 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-ACAAAATACAAGGATCATGTCTACCAAGTTTG
325 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA-AAAATACAAGGATCACGTCTACCAAGTTTG
* * * *** * *
5252110 GGGCCAAAACTCCTTTCGAAAAAATTTTCAAAAATCCCGAACTATAAAAAGTGTCAAAAATCGTG
389 GGACCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATG
* * *
5252175 AAAAATAGGAAACGA-TTGTCTTGCCATGACACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
454 AAAAATAGAAAACGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * ** *
5252239 ATTTCCAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGCACTTAAACCCACCTACC
519 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
5252304 ACCGTATCGGTGCACGGCTTGCGCATCCCGTCTCTCTGGCC-------T----GCCCGT----CT
584 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTCCGCCT
* * * * *
5252354 ACCCGCTCGTTTCGTCGGTTTGCTAAGGCATAC-GAGTTCATTCCCAGTCTAAGATCTGACTGGA
649 -CCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * * * * * * * * *
5252418 -TCGAGGGTTACGATAGCAGGATCGAAAGCATGCAGAGGGGGACTCGGCCGATCCTCGGCATGCA
713 CT-GAGGGTTGCGACAGCAGGATCGATAGCACGCAGAGGGGGACCCGACGGATCCCCGACTTGCG
* * * * **
5252482 CATCCCGCCTCTCTGGCCGGCTGAGAGCCCGCACGCTCATTTCACT-AGTTGACTTAGGCATATA
777 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCA-TGGGTTGACTTAGGCATACG
*
5252546 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAG
841 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * * * * * *
5252608 GGCTACGGTAGCACATGCTGGGCTCAAGCATTTGCTGATGCCGCATTTTTCTTCGTCGGGGTACC
1 GGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACC
* * * *
5252673 ATCGTCGAAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACAATCGAAGG-GGCCG
66 ATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGTATTGGGGTTCCGACGATCG--GGAGGCCG
* * * * *
5252737 AGGGGGCTGTGCACAAATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGTCCCCCTATC
129 -GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
5252802 CCTCATCAAACCTCGAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACCGGTTTGCTGCC
193 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
5252867 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
258 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
*
5252932 CGAGTTTTTAGCTGAATTTTTTTGTGAATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
323 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * ** * *
5252997 -GAAGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCCAACCGTAAAAAGATTT-GAAAATC
388 GGGA-CCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAG-TTTCAAAAATC
* *
5253060 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGGGAAGGCTTAAGGGACCATTGTA
451 ATGAAAAATAGAAAACGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * **
5253125 TGAATTTACAAGCCATAAAAATGGCATCGACACATAGAAATATGAAGATGTGCCTAAACCCACCT
516 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
** * *
5253190 ACCACCCTATCGATCCACGGCTTATGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGACTG
581 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTCCG
* * *
5253255 CCCGCCCACTCATTT-GTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
646 -CCTCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
5253319 GGACTGAGGGTTGC
710 GGACTGAGGGTTGC
5253333 CGCAGCACCC
Statistics
Matches: 5285, Mismatches: 662, Indels: 263
0.85 0.11 0.04
Matches are distributed among these distances:
877 4 0.00
878 6 0.00
879 222 0.04
880 231 0.04
881 98 0.02
882 125 0.02
883 25 0.00
884 71 0.01
885 1 0.00
886 280 0.05
887 41 0.01
888 757 0.14
889 151 0.03
890 200 0.04
891 411 0.08
892 166 0.03
893 2 0.00
894 74 0.01
895 248 0.05
896 264 0.05
897 6 0.00
898 2 0.00
899 5 0.00
900 6 0.00
901 110 0.02
902 367 0.07
903 626 0.12
904 214 0.04
905 107 0.02
906 157 0.03
907 220 0.04
908 85 0.02
909 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACC
ATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGTATTGGGGTTCCGACGATCGGGAGGCCGGG
GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
ACCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAA
AAATAGAAAACGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTCCGCCTCC
CACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTG
AGGGTTGCGACAGCAGGATCGATAGCACGCAGAGGGGGACCCGACGGATCCCCGACTTGCGCATC
CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
Found at i:5251683 original size:26 final size:26
Alignment explanation
Indices: 5251653--5251705 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5251643 GTTGACTTAG
5251653 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
5251679 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5251705 G
1 G
5251706 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5252568 original size:26 final size:26
Alignment explanation
Indices: 5252539--5252591 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5252529 GTTGACTTAG
*
5252539 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5252565 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5252591 G
1 G
5252592 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5254170 original size:26 final size:26
Alignment explanation
Indices: 5254134--5254186 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5254124 GTTGACTTAG
5254134 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
5254160 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
5254186 G
1 G
5254187 ATCGAACTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:5255394 original size:873 final size:871
Alignment explanation
Indices: 5253517--5255780 Score: 2928
Period size: 873 Copynumber: 2.6 Consensus size: 871
5253507 ATTGTCCCCC
* * * *
5253517 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGGTGCCAGTAGCCATTAAAGTGTCTAAAA
1 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
* *
5253582 TGGGGACCCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
66 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
** *
5253647 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCTTGGTTGGGGCCAAAACTCCTTTCAAAAA
131 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCAAAAA
* ** *
5253712 AATTTTAAAAAATCCCGAACCGCAAAAAGTTT-TGAAAGTGATGAAAAATAGAAAACGAGTCGTC
195 AATTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATTG-TGAAAAATAGAAAACGAGTCGTC
* * *
5253776 TTGCCATTAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGG
258 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * *
5253841 CTTTGGTATGTAGAAATATAAAGATGTTCCTAAACCCACCCACCACCCTATCAATCCATGGCTTG
323 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
* * * * * * *
5253906 CGCATCCCGTCTCTCTGACCGGCGTAGTACCCGCCACTTGCCTGCCTGCTCGTTTCATCGGTTTG
388 CGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCC-CGT-CC-GCCAGCTCGTTTCGTCAG-TTG
* * * * * * ** *
5253971 GCTTAGGCATACGGATTCATTCCGAGTCTAAGATCAGATCAAACTGAGGGTTGCAGCAGTAGGAT
449 GCTTAGGCATACGGGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGTACCAAGAT
* *
5254036 CTGCAGCACGCCAGAGAGGGACCCGACCGATCCCGCTTGCGCATCCCGCCCCTTTAGCCGGCTGA
514 CTGCAGCACGCCAGAGAGGGACCCGACCAATCCCGCTTGCGCATCCCGCCCCTCTAGCCGGCTGA
* * * ** *
5254101 CCGCCCGCACGTTCGTTTTGTAGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATAT
579 ACGCCCGCACGCTCATTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAT
* *
5254166 GGAGTTCATTCCCAGTCTAAGATCGAACTAGACGAGGGTTGCGGGACCACATGCTGGGCTTGGCA
644 GGAG-T-ATT-CCAG----AGATC--AC-AGACGA-GGTTGCGGCACCACATGCTGGGCTGGGCA
* *
5254231 TGTGCTGGTGCCACATTTTTCTTTGTCAGGGGAACCATCGCCGGAGAACCTGACAGCGGCATTGG
698 TGTGCTGGTGCCACATTTTTCTTCGTCAGGGGAACCATCACCGGAGAACCTGACAGCGGCATTGG
* * * * *
5254296 GGTTCAGGCGATAGGGGGGGCCGGGGGGTGTGCGCACAAAGAGGTGTGATGGGTGCTGGTATTGG
763 GGTTCAGGCGATAGGGGGGGCAGGGGGGTGTGCACACAAAGAGGTGCGATGGGTGCTAGTATCGG
* *
5254361 CCCTTATATTTACCCCCTATCCCTCATCAAACCTCAAGAACTCA
828 CCCTTATATTGACCCCCTATCCCACATCAAACCTCAAGAACTCA
* *
5254405 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCAATTAAAGTGTCTGAAA
1 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
* * *
5254470 TGGGGACACATTTTTCAAATGGTCACAAAATCATGTACACTTCT-AGTTTTTAGCCGAATTTTTT
66 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-TGAGTTTTTAGCTGAATTTTTT
*
5254534 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
130 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAAAAA
* *
5254599 AATTTTAAAAAATCCAGAACTGTAAAAAGTTTCAAAAATTGTGAAATATAGAAAACGAGTCGTCT
195 AATTTTAAAAAATCC-GAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCT
*
5254664 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
259 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
5254729 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATTGATCCATGGCTTGC
324 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
* * *
5254794 GCATCGCATCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCAGCTTGTTGT-GTCAGTTGGCTT
389 GCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCAGCTCGTT-TCGTCAGTTGGCTT
* * **
5254858 AGGCATATGGTGTTCATTCCCAATCTAAGATCGGATCAGACCAAGGGTTGCGGTACCAAGATC-G
453 AGGCATACGG-GTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGTACCAAGATCTG
* * * * *
5254922 ACAGCACG-TAGAGGGGGACCC-AGCCAATCCCGGGTTGCGCATCCCGCCCCTCTGGTCGGCTGA
517 -CAGCACGCCAGAGAGGGACCCGA-CCAATCCC-GCTTGCGCATCCCGCCCCTCTAGCCGGCTGA
*
5254985 ACGCCCGTC-CGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-
579 ACGCCCG-CACGCTCATTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* *
5255047 T-G-G-A-T-C-G-GA-C-C-GA-GA-GTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
643 TGGAGTATTCCAGAGATCACAGACGAGGTTGCGGCACCACATGCTGGGCT-GGGCATGTGCTGGT
** * *
5255100 GCCGTATTTTTGTTCGTC-GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCAT
707 GCCACATTTTTCTTCGTCAGGGG-A--A----C----CATCACCGGAGAACCTGA-CAGCGGCAT
** * * *
5255164 TGGGGTTTTGGCGATCGGGGGGGCTGAGGGGGGTGTGCACAC-ATGATGTGCGATGGGTGCTAGT
760 TGGGGTTCAGGCGATAGGGGGGGC--AGGGGGGTGTGCACACAAAGAGGTGCGATGGGTGCTAGT
* **
5255228 ACTCGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTTGAGAACTCA
823 A-TCGGCCCTTATATTGACCCCCTATCCCACATCAAACCTCAAGAACTCA
*
5255278 CACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
1 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
5255343 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
66 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
* * * *
5255408 GAGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTCAAAAAA
131 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAAAAAA
** *
5255473 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
196 ATTTTAAAAAATC-CGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
*
5255538 GCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
260 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
5255603 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
325 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
* * *
5255668 CATCCCTTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CCA-CTCATTTCGT-TGTTGGCTTAG
390 CATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCAGCTCGTTTCGTCAGTTGGCTTAG
* * *
5255728 GCATACGGAGTTTATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGTA
455 GCATACGG-GTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGTA
5255781 GCACATGCTG
Statistics
Matches: 1216, Mismatches: 132, Indels: 76
0.85 0.09 0.05
Matches are distributed among these distances:
859 24 0.02
860 28 0.02
861 2 0.00
862 3 0.00
864 1 0.00
866 1 0.00
867 1 0.00
868 58 0.05
869 6 0.00
870 20 0.02
871 30 0.02
872 20 0.02
873 453 0.37
874 2 0.00
876 1 0.00
877 1 0.00
880 1 0.00
881 1 0.00
882 2 0.00
883 37 0.03
884 137 0.11
885 4 0.00
886 4 0.00
887 203 0.17
888 176 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (871 bp):
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAAAAAA
ATTTTAAAAAATCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
ATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCAGCTCGTTTCGTCAGTTGGCTTAGG
CATACGGGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGTACCAAGATCTGCAGC
ACGCCAGAGAGGGACCCGACCAATCCCGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAACGCCCG
CACGCTCATTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTAT
TCCAGAGATCACAGACGAGGTTGCGGCACCACATGCTGGGCTGGGCATGTGCTGGTGCCACATTT
TTCTTCGTCAGGGGAACCATCACCGGAGAACCTGACAGCGGCATTGGGGTTCAGGCGATAGGGGG
GGCAGGGGGGTGTGCACACAAAGAGGTGCGATGGGTGCTAGTATCGGCCCTTATATTGACCCCCT
ATCCCACATCAAACCTCAAGAACTCA
Found at i:5256472 original size:698 final size:698
Alignment explanation
Indices: 5254986--5258580 Score: 5509
Period size: 698 Copynumber: 5.1 Consensus size: 698
5254976 GTCGGCTGAA
* * * * * *
5254986 CGCCCGTCCGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
1 CGCCCGCCCACTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATTGGA
* * * * * * * *
5255051 TCGGACCGAGAGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTGTTCG
66 CCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
** *
5255116 TCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTTTGGCGATCG
131 TC-GGG---CA----C----CATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGAGATCG
* * * *
5255181 GGGGGGCTGAGGGGGGTGTGCACACATGATGTGCGATGGGTGCTAGTACTCGGCCCTTATATTGG
184 GGAGGG-T-CGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * * *
5255246 CCCCCTATCCCACATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGG
247 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACATG
* * *
5255311 TTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
312 TTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
5255376 TGTACACTTTGAGTTTTTAGCTGAATTTTTTTGAGCATGCCAAAAAAAATACAAGGATCATGTCT
377 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
* * *
5255441 ACCAAGTTTGGGGCCAAAACCCCTT-CAAAAAAATTTT-AAAAAATCTCGAACCGTAAAAAGTTT
442 AACAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAACCT-GAACCGTAAAAAGTTT
* *
5255504 CAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGA
506 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
5255569 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAA
571 CCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCAAGTAGAAATATGAAGATGTGCCTAA
*
5255634 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCTTCTCTCTGGCCGGCGTAGTGCC
636 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
5255697 CGCCCGCCCACTCATTTCGTT-GTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATTGGA
1 CGCCCGCCCACTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATTGGA
*
5255761 CCAGACTGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
66 CCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
* * * *
5255826 TCGGGCACCATCACCGGAGAACCTGACCGGTGGTATTGGGGTCCCGGAGATCGGTAGGGTCGGGG
131 TCGGGCACCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGAGATCGGGAGGGTCGGGG
5255891 GGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
196 GGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
5255956 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGTAG
261 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGTAG
5256021 CCATTAAAGTGTCCGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
326 CCATTAAAGTGTCCGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
*
5256086 TTTTAGTTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGC
391 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGC
* * * * * *
5256151 CAAAAATCCTTACAAAAAAAATTTTAAAAAAACCTGAACTGTAAAACGTTTGAAAAATCGTGAAA
456 CAAAACTCCTT-CCAAAAAAATTTTAAAAAAACCTGAACCGTAAAAAGTTTCAAAAATCATGAAA
* * * *
5256216 AATAGAAAATGAGACGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTATATGAATT
520 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
5256281 TACAAGCCATAAAAATGGTATTGGCAAGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
585 TACAAGCCATAAAAATGGTATTGGCAAGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
*
5256346 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCCGCGTAGTGCC
650 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* * *
5256395 CGCCCGCCTACTCATTT-GTTGGTTGGCTTAGGCATATGGAGTTTATTCCCAGTCTAAGATCGGA
1 CGCCCGCCCACTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATTGGA
* * *
5256459 CCAGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATTTGCTGGTGCCGCATTTTTCTTCG
66 CCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
* * *
5256524 TCGGGGCACCATCGCCGAAGCATCGCCGGAAACCTGACTGGCGACATTGGGGTTCC-GACGATCG
131 TC-GGGCACCATCACCG--G-A------G-AACCTGACCGGCGGCATTGGGGTTCCGGA-GATCG
* * * *
5256588 AGG-GGGTCAGGTGCGGTGTGCGCACATGTTGTGCGATGGGTGCTGGTACTAGGCCCTTATATTG
184 -GGAGGGTC-GG-GGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
5256652 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAG
246 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAT
* * * *
5256717 GTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACCTTTTTCAAATGGTCATAAATTC
311 GTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGAGGACACTTTTTTCAAATGGTCACAAAATC
* * * **
5256782 TTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAAGATCATATC
376 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC
* * * *
5256847 TATCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTAAAAAAATCTTGAACTGTAAAAAGTT
441 TAACAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAA-CCTGAACCGTAAAAAGTT
* *
5256911 TCAAAAATCATGAAAAACAGAAAACGAGACGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
505 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
*
5256976 ACCATTGTATGAATTTACAAGCCCTAAAAATGGTATTGGCACA-TAGAAATATGAAGATGTGCCT
570 ACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCA-AGTAGAAATATGAAGATGTGCCT
* * *
5257040 AAACCCACCTAGCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCC
634 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
*
5257105 CGCCCGCCCACTTATTTCGTTGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATTGGA
1 CGCCCGCCCACTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATTGGA
*
5257170 CCAGACTGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
66 CCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
*
5257235 TCGGGCACCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGAGATCGGTAGGGTCGGGG
131 TCGGGCACCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGAGATCGGGAGGGTCGGGG
5257300 GGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
196 GGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
5257365 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGTAG
261 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGTAG
* *
5257430 CCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAACTGGTCACAAAATCTTGTACACTTCGAGT
326 CCATTAAAGTGTCCGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
5257495 TTTTAGTTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCTCGTCTAACAAGTTTGGGGC
391 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGC
* * * *
5257560 CAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAATTTTTAAAAATCACGAAAA
456 CAAAACTCCTTCCAAAAAAATTTTAAAAAAACCTGAACCGTAAAAAGTTTCAAAAATCATGAAAA
*
5257625 ATAGAAAGCGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
521 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
5257690 ACAAGCCCTAAAAATGGTATTGGCACA-TAGAAATATGAAGATGTGCCTAAACCCACCTAGCACC
586 ACAAGCCATAAAAATGGTATTGGCA-AGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* *
5257754 CTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCC
650 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* *
5257803 CGCCCGCCCACTTATTTCGTTGGTTGGCTTAGGCATACGGAGTTTATTCCCAATCTAAGATTGGA
1 CGCCCGCCCACTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATTGGA
*
5257868 CCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCA
66 CCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
*
5257933 TCGGGCACCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGAGATCGGGAGGGCCGGGG
131 TCGGGCACCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGAGATCGGGAGGGTCGGGG
*
5257998 GGTGTGAACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
196 GGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
5258063 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGTAG
261 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGTAG
5258128 CCATTAAAGTGTCCGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
326 CCATTAAAGTGTCCGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * * * * * *
5258193 TTTTAACTGAAATTTTTTGTGCATTCCGACAAAAATACAAGGATCACATCTACCAAGTTTGGGGT
391 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGC
* * * **
5258258 CAAAACACCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAA
456 CAAAACTCCTTCCAAAAAAATTTTAAAAAAACCTGAACCGTAAAAAGTTTCAAAAATCATGAAAA
* * *
5258323 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCTTTGTAAGAATTT
521 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * *
5258388 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCC
586 ACAAGCCATAAAAATGGTATTGGCAAGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
** *
5258453 TATCGATCCACAACTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCC
651 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* * * * * *
5258501 CTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCGG
1 C-GCCCGCCCACTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATTGG
** *
5258565 ACTGGACTGAGGGTTG
65 ACCAGACCGAGGGTTG
5258581 TGACAGCAGG
Statistics
Matches: 2660, Mismatches: 197, Indels: 67
0.91 0.07 0.02
Matches are distributed among these distances:
696 259 0.10
697 4 0.00
698 1517 0.57
699 74 0.03
700 34 0.01
701 4 0.00
702 2 0.00
706 2 0.00
707 1 0.00
708 4 0.00
709 44 0.02
710 334 0.13
711 381 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (698 bp):
CGCCCGCCCACTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATTGGA
CCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
TCGGGCACCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGAGATCGGGAGGGTCGGGG
GGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGTAG
CCATTAAAGTGTCCGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGC
CAAAACTCCTTCCAAAAAAATTTTAAAAAAACCTGAACCGTAAAAAGTTTCAAAAATCATGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGTATTGGCAAGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
Found at i:5261836 original size:26 final size:26
Alignment explanation
Indices: 5261807--5261857 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5261797 GTTGACTTAG
*
5261807 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
5261833 GCATACGAAGTTCACTCCCAGTCTA
1 GCATACGAAGTTCACTCCCAGTCTA
5261858 TGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAGTCTAA
Found at i:5262236 original size:903 final size:894
Alignment explanation
Indices: 5260162--5263370 Score: 4426
Period size: 903 Copynumber: 3.6 Consensus size: 894
5260152 GCATTATCGA
* * * * *
5260162 AGAACCTGACCGGCAGCATTGGGTTTCCGACGATCGGGGTGGCCGGGGGGTTTCCGCACATGATG
1 AGAACCTGACAGGCGGCATTGGG-TTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* *
5260227 TGCGATGGGTGCTGGCACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCAAGAACTC
65 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * * *
5260292 ACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTACCTGTAGCCATTAAAGTGTCTAAA
130 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
5260357 ATGGGGACATTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTT
195 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * ***
5260422 TGTGCATGCCAAAAAAAAAACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCTTTTTGAAA
260 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCAAAA
* * *
5260487 AAATTTTAAAACATCCCGAACCGTAAAAAGTTTCAAAAATCGTCAAAAATAGAAAACGAGTCGTC
325 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
5260552 TTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGT
390 TTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * ** * **
5260617 TATTGGCACACAAAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGATTTG
455 CATTGGAATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * **
5260682 CGCATCCCCCCTCTCTGGCCGGCATAGTG--CCC-GCCCG---CCCGCTCGTTTTGTCGGTTGGC
520 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCAGCCCGCCCCCCGCTCGTTTCATCGGTTGGC
* * * * *
5260741 TTAGGCATACGGAGTTCATT-CCAAGTCCAAGATTGGACCGGACCGAGGGTTGTGGCAGCAAGAT
585 TTAGGCATACGAAGTTCATTCCCAA-TCTAAGATTAGACCAGACCGAGGGTTGCGGCAG-AAGAT
* * * *
5260805 TGACAGCACACAGACGGGGACCCGACCGATCCTCGGCTTGCGCTTCCCGCCCCTCTGGCAGGCTA
648 TGACAGCACACAGAAGGGGACCCGATCGATCCTCGGCTTGCGCTTCCCGCCCCTCTGGCTGGCTG
* *
5260870 AGCGCCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATA
713 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* *
5260935 TGAAGTTCATTCCCAGTCTACGATCGAACC-AGACCGGGGGTTGCGACAGCACATGCTGGGCTCG
778 -GAAGTTCA-TCCCAGTCTA-GATCG-ACCGA-ACC-AGGGTTGCGGCAGCACATGCTGGGCTCG
* ** * * *
5260999 GGCATGTGCTAGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGTAGCATCGCAGG
837 GGCATGTGCTGGTGCCGCATTTTTCTTCCCCCGGGCACCATCGTCGGAGCATCGCCGG
* * * * * *
5261057 AGAACCTGACTGGTGGCATTGGGGTTCCGGCAATTGGGAGGGCCGGGGGGTGTGCGCACATGATG
1 AGAACCTGACAGGCGGCATT-GGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* *
5261122 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTC
65 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
5261187 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
130 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
5261252 ATGGGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTA-CATGAATTTTT
195 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-TGAATTTTT
* * **
5261316 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACTAAGTTCGGGGCTAAAACTGTTTCCAAA
259 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCAAA
** *
5261381 AAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
324 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
5261446 CTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
389 CTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
5261511 GCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
454 GCATTGGAATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
5261576 GCGCATCTCGTCTCTCTGGCCGGTGTAGTGCCCACCAGCCCGCCCTCCCGCTCGTTTCCTTGGTT
519 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-CCAGCCCGCCC-CCCGCTCGTTTCATCGGTT
* * *
5261641 GGCTTAGGCGTACGAAGTTCATTCCCAATCTAAGATTAGACCAGACCAAGGGTTGCGGTAGAAGG
582 GGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATTAGACCAGACCGAGGGTTGCGGCAGAA-G
* * * * * *
5261706 ATTGACAGCACATAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCTTCCCGCCCCTTTGGCTGAC
646 ATTGACAGCACACAGAAGGGGACCCGATCGATCCTCGGCTTGCGCTTCCCGCCCCTCTGGCTGGC
* * * * *
5261771 TGAGCGGCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAAGCA
711 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
*
5261836 TACGAAGTTCACTCCCAGTCTATGATCGGACCGAACCAAGGGTTGCGGCAGCACATGCTAGGCTC
776 TA-GAAGTTCA-TCCCAGTCTA-GATC-GACCGAACC-AGGGTTGCGGCAGCACATGCTGGGCTC
** *
5261901 GGGCATGTGCTGGTGCCATATTTTTCTTCCCCCGGGCATCATCGTCGGAGCATCGCCGG
836 GGGCATGTGCTGGTGCCGCATTTTTCTTCCCCCGGGCACCATCGTCGGAGCATCGCCGG
* * * * * *
5261960 AGAACCAT-ACCGACGGCATTAGGGTTTCGACGAT-GGGGGGGCCGAGGGGTATGCACACATGAT
1 AGAACC-TGACAGGCGGCATT-GGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
*
5262023 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACT
64 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
*
5262088 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
129 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
5262153 AATGGGGACACTTTTTCCAAATGGTCACAGAATCTTGTACATTTCGAGTTTTTAGCTGTATTTTT
194 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
5262218 TTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCATGCTT-GGGGCCAAAACTCCATCCAA
259 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG-TTCGGGGCCAAAACTCCTTCCAA
* * **
5262282 AAAAATTTTTAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAAACGAGTC
323 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG-AAAACGAGTC
* *
5262347 GTCTTGCCATCAATCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
387 GTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
5262412 TGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
452 TGGCATTGGAATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
** * * *
5262477 TTGCTTATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCA-CCCACCCGCCCGTTCGTTTCATCA
517 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-C-CAGCCCGCCC-CCCGCTCGTTTCATCG
* * * * * ** * *
5262541 GTTGGCTTAGGCATACGAAGTTCATTCCTAGTTTAAGATCAGACCAGACTGAGGGTCACGACAAC
579 GTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATTAGACCAGACCGAGGGTTGCGGC-AG
* ** * * *
5262606 AAGATTGGCAGCATGCAGAAGGGGACCCGATCGATCCTCGACTTGCGCATCCCACCCCTCTGGCT
643 AAGATTGACAGCACACAGAAGGGGACCCGATCGATCCTCGGCTTGCGCTTCCCGCCCCTCTGGCT
5262671 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
708 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
5262736 G-AT-G--G---A--CCAG---AG-T-----G----AGGGTTGTGGCAGCACATGTTGGGCTCGG
773 GCATAGAAGTTCATCCCAGTCTAGATCGACCGAACCAGGGTTGCGGCAGCACATGCTGGGCTCGG
** *
5262779 GCATGTGCTGGTGCCGCATTTTTCTT-CGTCGAGGCACCATCGTCGGAGCATCGTCGG
838 GCATGTGCTGGTGCCGCATTTTTCTTCCCCCG-GGCACCATCGTCGGAGCATCGCCGG
*
5262836 AGAACCTGACAGGCGGCATTCGGGTTCCGACGATCGGGTGGGCCGGGGGGTGTGCGCACATGATG
1 AGAACCTGACAGGCGGCATT-GGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
5262901 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
65 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * *
5262966 ACA-CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGTTGCCAGTAGCCGTTAAAGTGTCTGAA
130 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
5263030 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
195 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
5263095 TGTGGATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
260 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCAAAA
** *
5263160 AAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAGGAGTCGTC
325 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
5263225 TTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATTG
390 TTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
5263290 CATTGGCACAT--AAAAATATGAAGTTGTACCTAAACCCACCTACCACCCTATCGATCCACGGCT
455 CATTGG-A-ATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
*
5263353 TGCGCATCCCGTTTCTCT
518 TGCGCATCCCGTCTCTCT
5263371 CGTCGGCACA
Statistics
Matches: 2069, Mismatches: 219, Indels: 72
0.88 0.09 0.03
Matches are distributed among these distances:
875 150 0.07
876 321 0.16
877 95 0.05
881 1 0.00
887 1 0.00
888 1 0.00
889 1 0.00
892 4 0.00
894 1 0.00
895 494 0.24
896 3 0.00
897 1 0.00
898 3 0.00
899 5 0.00
900 1 0.00
902 314 0.15
903 661 0.32
904 12 0.01
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (894 bp):
AGAACCTGACAGGCGGCATTGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCAAAAA
AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
TGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGAATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCAGCCCGCCCCCCGCTCGTTTCATCGGTTGGCT
TAGGCATACGAAGTTCATTCCCAATCTAAGATTAGACCAGACCGAGGGTTGCGGCAGAAGATTGA
CAGCACACAGAAGGGGACCCGATCGATCCTCGGCTTGCGCTTCCCGCCCCTCTGGCTGGCTGAGC
GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGAA
GTTCATCCCAGTCTAGATCGACCGAACCAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
TGGTGCCGCATTTTTCTTCCCCCGGGCACCATCGTCGGAGCATCGCCGG
Found at i:5263815 original size:25 final size:26
Alignment explanation
Indices: 5263781--5263830 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
5263771 TGACTTAGGA
5263781 ATACAGAGTTCATT-CCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
*
5263806 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
5263831 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:5264698 original size:25 final size:25
Alignment explanation
Indices: 5264669--5264718 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
5264659 GGGTTGACTT
5264669 AAGCATACGAAGTTCATTCCAAGTC
1 AAGCATACGAAGTTCATTCCAAGTC
* *
5264694 AAGCATACGGAGTTCATTCCCAGTC
1 AAGCATACGAAGTTCATTCCAAGTC
5264719 TATGATTGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (25 bp):
AAGCATACGAAGTTCATTCCAAGTC
Found at i:5265966 original size:887 final size:892
Alignment explanation
Indices: 5263681--5266017 Score: 3153
Period size: 903 Copynumber: 2.6 Consensus size: 892
5263671 CAGCACGATT
** * ** * *
5263681 GGCAGCACACAGAGGGGGACCCAGTTGATCCCCGACTTGCGCATCCCGTGCCTCTGGCCGACTAA
1 GGCAGCACACAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
5263746 GCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGAATACAGAGTTCATT-CCAGTCTAAGCATAC
66 GCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * *
5263810 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATG-TCGGGCTTGG
131 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCT-GGGCTCGG
* * * *
5263874 GCATGTGCTGGTGCCGCATTTTTCTTTGCTGGGGCACCAT---C--G--T--CGAAGAACTTGAC
195 GCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGAGCATCGCGGAGAACCTGAC
* * * * *
5263930 CGGCGGCATTGGGGTTCCGACGATCAGGGGGGTCGGGGGAGTGTGCGCACAAGATGTGCAATGGG
260 CGGCGACATTGGGGTTCCGACGATCGGGGGGGTCGGGGG-GTATGCGCACATGATGTGCAGTGGG
*
5263995 TGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
324 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
5264060 TAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAAACATTAAAGTGTCTGAAATAGGGACA
389 TAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAACCATTAAAGTGTCTGAAATGGGGACA
* *
5264125 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGAGCATGC
453 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
*
5264190 CAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAAATCCTTCCAAAAAAATTTTA
518 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCCAAAAATACTTCCAAAAAAATTTTA
* ** * *
5264254 AAAAATCCCAAACCGCAAAAGGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCACTA
583 AAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCACTA
* **
5264319 AAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
648 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCATTGGCA
* *
5264384 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCC
713 CACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGACTTGCACATCCC
* * * * * * *
5264449 GTCTCTTTGGCCGGCGTAGTGCTCACCCTTTCGCTCGCCCGCTCGTTTTGTCGGTTGGCTTAGGC
778 ATCTCTCTGACCGACATAGTGCTCACCC-TTCGCTCGCCCGCTCGTTTCGTCGGTTGGCATAGGC
* **
5264514 ATACGAAGTTCATTCCTAGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCAA
842 ATACGAAGTTCATTCCTAGCCTAAGATTAAACCGGACCGAGGGTTGT-G--GC-A
* *
5264569 GATCTGCAGCACACAGAGGGGGACTCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAG
1 G----GCAGCACACAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * * * *
5264634 CTGAGCACCTGCACA-CTCATTTCATGGGTTGACTTAAGCATACGAAGTTCATTCCAAGTC-AAG
62 CTGAGCGCCCGCA-AGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
5264697 CATACGGAGTTCATTCCCAGTCTATGATTGGACCAGACCGAGGGTTGCAACAGCACATGCTGGGC
126 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGC
* *** **
5264762 TCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCCTAGCATGATCGCCAGAGCATCGTCGGAGAA
191 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCC-GAGCATCG-CGGAGAA
* * *
5264827 CCTGACCGACGGA-ATTGGGGTTCCGACGATCGGGGGGGGTCGGGGGGTTTGTGCACATGATGTG
254 CCTGACCGGC-GACATTGGGGTTCCGACGATC-GGGGGGGTCGGGGGGTATGCGCACATGATGTG
* *
5264891 C-GATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCAAGAACTCA
317 CAG-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
5264955 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAACCATTAAAGTGTCTGAAA
381 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC-AGTAACCATTAAAGTGTCTGAAA
*
5265020 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTGTTTAGCTGAATTTTTTT
445 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
5265085 GTGCATGCCAACAAAAATACAAGGATTACATCTACCAAGTTTGGGGGCCAAAACTACTTCCGAAA
510 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCCAAAAATACTTCCAAAA
* *
5265150 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC
575 AAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC
*
5265215 TTGC-CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATG
640 TTGCAC-TAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATG
*** **
5265279 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGTTT
704 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGACTT
* *
5265344 GCACATCCCATCTCTCTGATCGACATAGTG-TC-CGCC-T-GCTCGCCCGCTCGTTTCGTTGGTT
769 GCACATCCCATCTCTCTGACCGACATAGTGCTCAC-CCTTCGCTCGCCCGCTCGTTTCGTCGGTT
* * *
5265405 GGCATAGGCATACGGAGTTTATTCCTAGCCTAAG-TTCAAATCGGACCGAGGG-T-T-GC-
833 GGCATAGGCATACGAAGTTCATTCCTAGCCTAAGATT-AAACCGGACCGAGGGTTGTGGCA
* * * * *
5265461 GGCAGCACACAGAGGGGGACCCAACCGATCTCCGGCTTACGCATCCCACCCCTATGGCCGGCTGA
1 GGCAGCACACAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
5265526 GCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATTC
66 GCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * ** *
5265591 AGAGTTCATTCCCAGACTAAGATCGGACTGGACCGAGGGTTGCGATAGCACATGCTGGGCTCGGG
131 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
* *
5265656 CATGTGCTGGTGTCGTATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGA
196 CATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCC-GAGCATCG-CGGAGAACCTGA
* * * * * * *
5265721 CTGGCGACTTTGGGGTTCTGACGATC-GGGGGGCCGAGGGGTATACGCACATGATGGGCAGTGGG
259 CCGGCGACATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTATGCGCACATGATGTGCAGTGGG
5265785 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
324 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * ** * *
5265850 TAAAGTGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCAACAAAATGTCTAAAATGGGGACA
389 TAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAACCATTAAAGTGTCTGAAATGGGGACA
* *
5265915 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTACCTGAATTTTTTTGTGCATGC
453 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
5265980 CAACGAAAATACAACGATGACGTCTAACAAGTTTGGGG
518 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
5266018 CACCATCGCC
Statistics
Matches: 1269, Mismatches: 149, Indels: 63
0.86 0.10 0.04
Matches are distributed among these distances:
887 246 0.19
888 108 0.09
889 138 0.11
892 191 0.15
893 6 0.00
894 2 0.00
895 1 0.00
898 2 0.00
899 3 0.00
900 65 0.05
901 1 0.00
902 2 0.00
903 273 0.22
904 231 0.18
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
GGCAGCACACAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
GCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
CATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGAGCATCGCGGAGAACCTGACC
GGCGACATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTATGCGCACATGATGTGCAGTGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCAGTAACCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCCAAAAATACTTCCAAAAAAATTTTAAAA
AATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCACTAAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCATTGGCACAC
AGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGACTTGCACATCCCATC
TCTCTGACCGACATAGTGCTCACCCTTCGCTCGCCCGCTCGTTTCGTCGGTTGGCATAGGCATAC
GAAGTTCATTCCTAGCCTAAGATTAAACCGGACCGAGGGTTGTGGCA
Found at i:5266798 original size:26 final size:26
Alignment explanation
Indices: 5266768--5266820 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5266758 GTCGACTTAG
*
5266768 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5266794 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5266820 G
1 G
5266821 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5268088 original size:467 final size:462
Alignment explanation
Indices: 5267249--5268140 Score: 1430
Period size: 467 Copynumber: 1.9 Consensus size: 462
5267239 TGGGTGCTGC
* * *
5267249 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACTCCCGTAAAGA
1 TACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCACACCCCCGTAAAGA
*
5267314 GTATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAGTGTCTGAAATGGGAACTTTTTTCA
66 GCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAGTGTCTGAAATGGGAACTTTTTTCA
*
5267379 AAAGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
131 AAAGTCACAAAATCTTATACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * *
5267444 ACAAGGATCACGTCTACCAAGTTTGGACCCAAAATTCCTTCCGAAAAAAATTTAAAAATTCCTGA
196 ACAAGGATCACGTCTACCAAGTTAGGACCCAAAATGCCTTCCGAAAAAAATTTAAAAAATCCTGA
* * *
5267509 ACCGCAAAAATTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGACATGAAACTTCACGT
261 ACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGACATGAAACTTCACGT
* **
5267574 GAAGGCTTACGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACATGCAAAAATAT
326 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACACACAAAAATAT
5267639 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCCTGCGCATCAGGGGATGTGCTG
391 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCCTGCGCATCAGGGGATGTGCTG
5267704 GTGTTGG
456 GTGTTGG
* *
5267711 TACTTGGCCCTTATATTGGCTCCCTATCCCCCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
1 TACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCACACCCCCGTAAAGA
* * *
5267776 GCATTTGAGATTTTACAGGTTTGCT-GCAGGTAGCCATTAAAGTGTTTGACATGGGGACACTTTT
66 GCATTTGAGATTTTACAGGTTTGCTACCA-GTAGCCATT-AAGTGTCTGAAAT-GGGA-ACTTTT
* * * *
5267840 TTCAAATGGTCACAAAATCTTATACATTTCGAGTTTTTAGCTGATTTTTTTTTGTGCATGCCAAC
127 TTCAAA-AGTCACAAAATCTTATACACTTCGACTTTTTAGCTGA-ATTTTTTTGTGCATGCCAAC
**
5267905 AAAAATACAAGGATCACGTCTACCAAGTTAGGGTCCAAAATGCCTTCC-AAAAAAATTTTAAAAA
190 AAAAATACAAGGATCACGTCTACCAAGTTAGGACCCAAAATGCCTTCCGAAAAAAA-TTTAAAAA
*
5267969 AT-CTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
254 ATCCT-GAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGACATGAAA
*
5268033 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
318 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACACAC
* *
5268098 AGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGA
383 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
5268141 ACCACGGCTT
Statistics
Matches: 393, Mismatches: 29, Indels: 11
0.91 0.07 0.03
Matches are distributed among these distances:
461 2 0.01
462 93 0.24
463 11 0.03
464 4 0.01
465 12 0.03
466 42 0.11
467 229 0.58
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.28
Consensus pattern (462 bp):
TACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCACACCCCCGTAAAGA
GCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAGTGTCTGAAATGGGAACTTTTTTCA
AAAGTCACAAAATCTTATACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
ACAAGGATCACGTCTACCAAGTTAGGACCCAAAATGCCTTCCGAAAAAAATTTAAAAAATCCTGA
ACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGACATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACACACAAAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCCTGCGCATCAGGGGATGTGCTG
GTGTTGG
Found at i:5268433 original size:25 final size:25
Alignment explanation
Indices: 5268387--5268436 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
5268377 ATGACTTAGG
*
5268387 CATACGGAGTTCAATTCTAGTCTAA
1 CATACGGAGTTCAATTCCAGTCTAA
*
5268412 CATATGGAGTTC-ATTCCCAGTCTAA
1 CATACGGAGTTCAATT-CCAGTCTAA
5268437 GATCGGACCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 3 0.14
25 19 0.86
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (25 bp):
CATACGGAGTTCAATTCCAGTCTAA
Found at i:5269319 original size:30 final size:31
Alignment explanation
Indices: 5269265--5269334 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 31
5269255 ATTAATTTTT
* *
5269265 TAAT-TTTTTAATTATATATATATTTATATAA
1 TAATATTTTTAA-TATATATATATTTAAAAAA
* *
5269296 TGATATTTTTAA-ATATTTATATTTAAAAAA
1 TAATATTTTTAATATATATATATTTAAAAAA
5269326 TAATATTTT
1 TAATATTTT
5269335 ATTAATTTCA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
30 23 0.70
31 3 0.09
32 7 0.21
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (31 bp):
TAATATTTTTAATATATATATATTTAAAAAA
Found at i:5270640 original size:26 final size:26
Alignment explanation
Indices: 5270611--5270661 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5270601 TTGACTTAGG
*
5270611 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCACTCTAAGC
*
5270637 ATACGGAGTTCATTCCTACTCTAAG
1 ATACGGAGTTCATTCCCACTCTAAG
5270662 ATCGGATAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCACTCTAAGC
Found at i:5272228 original size:894 final size:894
Alignment explanation
Indices: 5271137--5273333 Score: 2851
Period size: 894 Copynumber: 2.5 Consensus size: 894
5271127 TTTTGAAAAT
*
5271137 CATGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATT
1 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
5271202 G-ACTTGCA-AAATATGAAGATCTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTACGC
66 GCAC--GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGC
* *
5271265 ATCCCGTCTCCCTGGCCGGCGTAGTGCCTGCCCGTCGGCCCACCCGCTCGTTTCGTCAGTTGGCT
129 ATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGTC-GCCCACCCGCTCGTTTCGTCGGTTGGCT
* * ** * *
5271330 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGATCAGACTGTTGGTTACGGTAGCAAGATCG
193 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGACTGATGGTTGTGGCAGCAGGATCG
* * * **
5271395 GTAGCATGCACCAGGGGACCCCATCGATCCCCAGCTTCTGCATCCTGCCCCTCTGGTCGGCTGAG
257 GTAGCACGCA-GAGGGGACCCCACCGATCCCCAGCTTCTGCATCCCACCCCTCTGGTCGGCTGAG
* * * *
5271460 CGCTCGTACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCAAATG
321 CGC-CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA--ATATG
*
5271525 GAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCATAAC-ATGC-AGGGCT-CG
383 GAGTTCATT-CCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGAACAATGCTA-GGCTCCG
* *
5271587 G-GC-ATGTGCTGGTGCCACATTTTTCTTCGTCGG-GGCACCATCG-TCGGAGAACCTAACCGAC
445 GTGCAATGCGCTGGTGCC-CATTTTTCTTCGTCGGAGG---CATCGCACGGAGAACCTAACCGAC
*
5271648 GGCATTGGGGT-T-CGGACGATC-GAGGGGGCCGGG-GGGTGTGCGCACATGAT-GTGCGATGGG
506 GGCATTGGGGTCTCCGG-CGATCAGAGGGGGCCGGGCGGGTGTGCACACATGATGGTGCGATGGG
* *
5271708 TGCT-GGTACT-TGGCCCTTAT-ATTGGCCCCCTA-TCCCTCATCAAACCTCGAGAACTCAC-AC
570 TGCTACGTACTATGGCCCTTATAATTGGCCCCCTATTCCCTCATCAAA-CTCAAGAACTCACAAC
*
5271768 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-ATCAGTAGCCATTAAAGTGTCTGAAATG
634 CCCCTTAAAGAGCATTTGA-ATTTTACAGGTTTGCTGACCAGTAGCCATTAAAGTGTCTGAAATG
5271832 GGGA-CACTCTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTT
698 GGGAGCACTCTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TTTTTTT
* * *
5271896 GTGCATGCCATAA-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
762 GTGCAGGCCA-AATAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAAATCCTTCCAAAA
* *
5271960 AAATTTTAAAAAAATCCCAAACCACAAAAA-TATTCAAAAGTCTTGAAAAATAGAAAACGAGTCG
826 AAATTTT-AAAAAATCCCAAACCACAAAAAGT-TTCAAAAATCATGAAAAATAGAAAACGAGTCG
5272024 GCTTGC
889 GCTTGC
*
5272030 CATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATT
1 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
5272095 AGCACACAGAAATATGAAGATGTGCCTAAACCCTCCTACCACTCTATCGATCCACGGCATGCACA
66 -GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGCA
* * *
5272160 TCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGGTCGCCCACCCGCTCGTTTCGTTGGTTGCCTT
130 TCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCC-GTCGCCCACCCGCTCGTTTCGTCGGTTGGCTT
* * * *
5272225 AGGCATACGGACTTCAATCCCAGTCTAAGATCAGACCAGACCGATGGTTGTTGCAGCAGGATCGG
194 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGACTGATGGTTGTGGCAGCAGGATCGG
** * * *
5272290 TAGCACGCAGAGGGGCACCCGGCCAATCCTC-GACTTGTGCATCCCACCCCTCTGGTCGGCTGAG
258 TAGCACGCAGAGGGG-ACCCCACCGATCCCCAG-CTTCTGCATCCCACCCCTCTGGTCGGCTGAG
* *
5272354 CACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA-TTCATT-CCA-T-T--ATAT--A
321 CGCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAATATGGA
*
5272411 G---A-T-C---C--AGATC-GTACC-G--GAGGGTTGCGGCAGCACAATGCTAGGCTCCGGTGC
385 GTTCATTCCAGTCTAAGATCAG-ACCAGACGAGGGTTGCGGCAGAACAATGCTAGGCTCCGGTGC
* * * * *
5272462 AATGCGCTGGTGCCCATTTTTCTTCGTTGGAGGCATCGCACGGCGAACTTGACCGGCGGCATTGG
449 AATGCGCTGGTGCCCATTTTTCTTCGTCGGAGGCATCGCACGGAGAACCTAACCGACGGCATTGG
* * *
5272527 GGTCTCCGGCGATCAGGGGGGGCCGGGCGGGTGTGCACACCTGATGGTGTGATGGGTGCTACGTA
514 GGTCTCCGGCGATCAGAGGGGGCCGGGCGGGTGTGCACACATGATGGTGCGATGGGTGCTACGTA
*
5272592 CTATGGCCCTTATAATTGGCCCCCTATTCCCTCATCAAACTCAAGAACTCACAACCCTCTTAAAG
579 CTATGGCCCTTATAATTGGCCCCCTATTCCCTCATCAAACTCAAGAACTCACAACCCCCTTAAAG
* *
5272657 AGCATTTGAATTTTACAGGTTTGCTGGGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAGCACTT
644 AGCATTTGAATTTTACAGGTTTGCT-GACCAGTAGCCATTAAAGTGTCTGAAATGGGGAGCACTC
5272722 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAGGCCAA
708 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAGGCCAA
* **
5272787 ATAAAATACAAGGATCATGTCTACCAAGTTTGGGCCCAAAAATCCTTCTGAAAAAATTTTAAAAA
773 ATAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAAATCCTTCCAAAAAAATTTTAAAAA
* ** *
5272852 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
838 ATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGGCTTGC
5272909 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
1 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * *
5272974 GGCATGCAGAAAGATGAATATGTGCCTAAACCCACCTACCACACTATCGATCCACAGCTTGCGCA
66 -GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGCA
* * * *
5273039 TCCCGTCTCTCTAGCCGGCGTAGTGCCCG-CC--CGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
130 TCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGTCGCCCACCCGCTCGTTTCGTCGGTTGGCTTA
* * * *
5273101 GGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGA-TCAATGATTGTGGCAGCAGGATCGG
195 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-AGACT-GATGGTTGTGGCAGCAGGATCGG
* *
5273165 TAGCACGCAGAGGGGGA-CCCAGCCGATCCCTAGCTTGC-GCATCCCACCCTTCTGGTCGGCTGA
258 TAGCACGCAGA-GGGGACCCCA-CCGATCCCCAGCTT-CTGCATCCCACCCCTCTGGTCGGCTGA
* * * *
5273228 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCTTTCCCAGTCTAAGGATAC
320 GCG-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA--ATAT
*
5273293 GGAGTTCATTTCCAGTCTAAGATCAGACCAAACCGAGGGTT
382 GGAGTTCA-TTCCAGTCTAAGATCAGACCAGA-CGAGGGTT
5273334 ACGACAGCAC
Statistics
Matches: 1130, Mismatches: 111, Indels: 119
0.83 0.08 0.09
Matches are distributed among these distances:
869 15 0.01
870 13 0.01
871 28 0.02
872 25 0.02
873 36 0.03
874 18 0.02
875 174 0.15
876 17 0.02
877 13 0.01
878 44 0.04
879 234 0.21
880 101 0.09
881 52 0.05
883 3 0.00
884 2 0.00
885 2 0.00
886 3 0.00
888 1 0.00
890 2 0.00
891 2 0.00
892 3 0.00
893 78 0.07
894 243 0.22
895 5 0.00
896 8 0.01
897 1 0.00
900 7 0.01
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (894 bp):
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGTCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGACTGATGGTTGTGGCAGCAGGATCGGTAG
CACGCAGAGGGGACCCCACCGATCCCCAGCTTCTGCATCCCACCCCTCTGGTCGGCTGAGCGCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAATATGGAGTTCAT
TCCAGTCTAAGATCAGACCAGACGAGGGTTGCGGCAGAACAATGCTAGGCTCCGGTGCAATGCGC
TGGTGCCCATTTTTCTTCGTCGGAGGCATCGCACGGAGAACCTAACCGACGGCATTGGGGTCTCC
GGCGATCAGAGGGGGCCGGGCGGGTGTGCACACATGATGGTGCGATGGGTGCTACGTACTATGGC
CCTTATAATTGGCCCCCTATTCCCTCATCAAACTCAAGAACTCACAACCCCCTTAAAGAGCATTT
GAATTTTACAGGTTTGCTGACCAGTAGCCATTAAAGTGTCTGAAATGGGGAGCACTCTTTTCAAA
TGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAGGCCAAATAAAATA
CAAGGATCACGTCTACCAAGTTTGGGCCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAA
CCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGGCTTGC
Found at i:5273028 original size:879 final size:863
Alignment explanation
Indices: 5271558--5273265 Score: 2475
Period size: 879 Copynumber: 2.0 Consensus size: 863
5271548 AGACCAGATC
* *
5271558 GAGGGTTGCGGCATAACATGCAGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGC
1 GAGGGTTGCGGCAGAACATGCAGGGCTCGGGCATGCGCTGGTGCCACATTTTTCTTCGTCGGGG-
*
5271623 ACCATCGTCGGAGAACCTAACCGACGGCATTGGGGTTCGGACGATCGAGGGGGCCGGGGGGTGTG
65 -CCATCGACGGAGAACCTAACCGACGGCATTGGGGTTCGGACGATCGAGGGGGCCGGGGGGTGTG
* *
5271688 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
129 CACACATGATGTGCGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
5271753 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTATCAGTAGCCATTA
194 CTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTA
5271818 AAGTGTCTGAAATGGGGACACTCTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAG
259 AAGTGTCTGAAATGGGGACACTCTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAG
* *
5271883 CTGAATTTTTTTTGTGCATGCCATAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
324 CTGAATTTTTTTTGTGCAGGCCATAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAA
* * *
5271948 CTCCTTCCAAAAAAATTTTAAAAAAATCCCAAACCACAAAAATATTCAAAAGTCTTGAAAAATAG
389 ATCCTTCCAAAAAAATTTTAAAAAAATCCCAAACCACAAAAATATTCAAAAATCATGAAAAATAG
*
5272013 AAAACGAGTCGGCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAA
454 AAAACGAGTCGGCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * *
5272078 GCCATAAAAATGGCATTAGCACACAGAAATATGAAGATGTGCCTAAACCCTCCTACCACTCTATC
519 GCCATAAAAATGGCATTAGCACACAGAAAGATGAAGATGTGCCTAAACCCACCTACCACACTATC
* * *
5272143 GATCCACGGCATGCACATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGGTCGCCCACCCGCTC
584 GATCCACAGCATGCACATCCCGTCTCTCTAGCCGACGTAGTGCCCG-CC---CGCCCACCCGCTC
* * * *
5272208 GTTTCGTTGGTTGCCTTAGGCATACGGACTTCAATCCCAGTCTAAGATCAGACCAGACCGATGGT
645 GTTTCATCGGTTGCCTTAGGCATACGGACTTCAATCCCAGTCTAAGATCAGACCAGACCAATGAT
* * *
5272273 TGTTGCAGCAGGATCGGTAGCACGCAGAGGGGCACCCGGCCAATCCTCGA-CTTGTGCATCCCAC
710 TGTGGCAGCAGGATCGGTAGCACGCAGAGGGGCACCCAGCCAATCC-CGAGCTTGCGCATCCCAC
* *
5272337 CCCTCTGGTCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGATTCATTC
774 CCCTCTGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGATTCATTC
5272402 CATTATATAGATCCAGATCGTACCG
839 CATTATATAGATCCAGATCGTACCG
* *
5272427 GAGGGTTGCGGCAGCACAATGCTA-GGCTCCGGTGCAATGCGCTGGTGCC-CATTTTTCTTCGTT
1 GAGGGTTGCGGCAGAAC-ATGC-AGGGCT-CGG-GC-ATGCGCTGGTGCCACATTTTTCTTCGTC
* * * * *
5272490 GGAGG-CATCGCACGGCGAACTTGACCGGCGGCATTGGGGTCTCCGG-CGATCAGGGGGGGCCGG
61 GG-GGCCATCG-ACGGAGAACCTAACCGACGGCATTGGGGT-T-CGGACGATC-GAGGGGGCCGG
* *
5272553 GCGGGTGTGCACACCTGATGGTGTGATGGGTGCTACGTACTATGGCCCTTATAATTGGCCCCCTA
121 G-GGGTGTGCACACATGAT-GTGCGATGGGTGCT-CGTACT-TGGCCCTTAT-ATTGGCCCCCTA
*
5272618 TTCCCTCATCAAA-CTCAAGAACTCACAACCCTCTTAAAGAGCATTTGA-ATTTTACAGGTTTGC
181 -TCCCTCATCAAACCTCAAGAACTCAC-ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
5272681 TGGGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAGCACTTTTTTCAAATGGTCACAAAATCTTG
244 T--ACCAGTAGCCATTAAAGTGTCTGAAATGGGGA-CACTCTTTTCAAATGGTCACAAAATCTTG
*
5272746 TACACTTTGAGTTTTTAGCTGAA-TTTTTTTGTGCAGGCCA-AATAAAATACAAGGATCATGTCT
306 TACACTTTGAGTTTTTAGCTGAATTTTTTTTGTGCAGGCCATAA-AAAATACAAGGATCACGTCT
** * **
5272809 ACCAAGTTTGGGCCCAAAAATCCTTCTGAAAAAATTTT-AAAAAATCCCGAACCGTAAAAAGT-T
370 ACCAAGTTTGGGCCCAAAAATCCTTCCAAAAAAATTTTAAAAAAATCCCAAACCACAAAAA-TAT
*
5272872 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
434 TCAAAAATCATGAAAAATAGAAAACGAGTCGGCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* ** *
5272937 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAGATGAATATGTGCCTA
499 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCACACAGAAAGATGAAGATGTGCCTA
* * *
5273002 AACCCACCTACCACACTATCGATCCACAGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCC
564 AACCCACCTACCACACTATCGATCCACAGCATGCACATCCCGTCTCTCTAGCCGACGTAGTGCCC
* * * * *
5273067 GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC
629 GCCCGCCCACCCGCTCGTTTCATCGGTTGCCTTAGGCATACGGACTTCAATCCCAGTCTAAGATC
** * * * *
5273132 AGACTGGATCAATGATTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCAGCCGATCCCTA
694 AGACCAGACCAATGATTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGCACCCAGCCAATCCCGA
* *
5273197 GCTTGCGCATCCCACCCTTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
759 GCTTGCGCATCCCACCCCTCTGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGG
5273262 CATA
824 CATA
5273266 TGGAGTTCTT
Statistics
Matches: 749, Mismatches: 67, Indels: 40
0.88 0.08 0.05
Matches are distributed among these distances:
869 15 0.02
870 13 0.02
871 28 0.04
872 23 0.03
873 28 0.04
874 17 0.02
875 184 0.25
876 5 0.01
877 10 0.01
878 42 0.06
879 233 0.31
880 100 0.13
881 51 0.07
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (863 bp):
GAGGGTTGCGGCAGAACATGCAGGGCTCGGGCATGCGCTGGTGCCACATTTTTCTTCGTCGGGGC
CATCGACGGAGAACCTAACCGACGGCATTGGGGTTCGGACGATCGAGGGGGCCGGGGGGTGTGCA
CACATGATGTGCGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTCTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT
GAATTTTTTTTGTGCAGGCCATAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAAAT
CCTTCCAAAAAAATTTTAAAAAAATCCCAAACCACAAAAATATTCAAAAATCATGAAAAATAGAA
AACGAGTCGGCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
CATAAAAATGGCATTAGCACACAGAAAGATGAAGATGTGCCTAAACCCACCTACCACACTATCGA
TCCACAGCATGCACATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCACCCGCTCGTTTCA
TCGGTTGCCTTAGGCATACGGACTTCAATCCCAGTCTAAGATCAGACCAGACCAATGATTGTGGC
AGCAGGATCGGTAGCACGCAGAGGGGCACCCAGCCAATCCCGAGCTTGCGCATCCCACCCCTCTG
GTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGATTCATTCCATTATA
TAGATCCAGATCGTACCG
Found at i:5275732 original size:26 final size:26
Alignment explanation
Indices: 5275703--5275754 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
5275693 TGGTCCGATA
5275703 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
5275729 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
5275755 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:5278416 original size:26 final size:26
Alignment explanation
Indices: 5278367--5278417 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5278357 GGTCCGATTA
*
5278367 TAGACTGGGAGTGAACTTCATATGCT
1 TAGACTGGGAGTGAACTCCATATGCT
*
5278393 TAGACTGGGAGTGAACTCCGTATGC
1 TAGACTGGGAGTGAACTCCATATGC
5278418 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAGTGAACTCCATATGCT
Found at i:5280159 original size:26 final size:26
Alignment explanation
Indices: 5280130--5280182 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5280120 CCAGTCCGAT
5280130 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5280156 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5280182 C
1 C
5280183 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5281051 original size:26 final size:25
Alignment explanation
Indices: 5281022--5281073 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
5281012 CTGGTCCAAT
5281022 CTTAGACAGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTC-GTATG
**
5281048 CTTAGATTGGGAATGAACTCGTATG
1 CTTAGACAGGGAATGAACTCGTATG
5281073 C
1 C
5281074 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (25 bp):
CTTAGACAGGGAATGAACTCGTATG
Found at i:5282412 original size:888 final size:888
Alignment explanation
Indices: 5274345--5283906 Score: 10829
Period size: 888 Copynumber: 10.8 Consensus size: 888
5274335 NNNNNNNNNN
** * * *
5274345 ATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTCAAA--TTTTT-CAA-GAGTTTTGGTCCCAAA
1 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAA
* *
5274406 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTTTAGCTAAAAACTCGAAG
66 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * * *
5274471 TGTACAAGATTTTGGGACCATTTGAAAAAAATATCCCTATTTCAGACACTTTAATGGCTACTGGC
131 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
5274536 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGGTGAGGGAT
196 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
5274601 AGGGGTCCAATATAAGGGCCAAGTATCAGCACCCATCACACATCATGTGCGCACACCCCTCCTGG
261 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-ACA-----CC-GG
* * * * * ** * * *
5274666 CCCCCCCGATCGTCGAAACCCCAATGTCGCCCGTAAGGTTCTCCGGTGATGCTCTGACAAAGGTG
319 -CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG
* * * * * * * *
5274731 CCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTTCTGGCGCATCCCTTG
383 CCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * * *
5274796 GTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAGTGAAATCCGTAAGC
448 GTCCGGTCCGATC-TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * ** * *
5274861 CTAAGTCAACCCACGAAACGAGCATGCCGGCACTCAATCGGCCAGAGGGGCAGGG-TGTGCAAGA
512 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC-GGGATGCGCAAGC
** * * * ** * *
5274925 CGGGGATCGGCCGGGTCCCTCTCTGTGTGCTA-CGAATCCTGCTACCATAACCCTCATTCCGGTC
576 CGGGGATCGATCGGGTCCCCCTCTGCGTGCTATCG-ATCCTGCTGCCGCAACCCTCAGTCTGGTC
* * * * * * *
5274989 TGATCTTAGGCAGGGAATGAACTCCATATGCCTAAGCCAACTGACAAAATGAACGGGCGGGCGGG
640 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * *
5275054 CACTA-AACCGGCCAAAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTC
705 CACTACGA-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT-
***
5275118 A-GCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
768 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
5275182 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTAGTTTTCTATATTTCACG
833 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
** *
5275238 ATTTTTGAAACTTTTTGCGGTTCCAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAA
1 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAA
* * *
5275303 CTTGGTAGACGTGATCCTTGTATTTTTGTTGACATGCACAAAAAAATTCAGCTAAATACTCGAAG
66 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
5275368 TGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGAC
131 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * * *
5275433 AGCAAACCTATAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATTAGGGAT
196 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
5275498 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCATAGCCCCTGGCC
261 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG---A-CACC-GGCC
** * * * * * * *
5275563 CCACCGATCGTTAG-ACCCCAACGTCGTCGGTCAGGTTCCCCGGCAATGCTCCGATGATGGTGCG
321 CC-CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
* * * * * * *
5275627 TCGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACATCCCTTGGT
385 CCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* *
5275692 CTGGTCCGATATTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
450 CCGGTCCGAT-CTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
*
5275757 AAGTCAACCCACGAAACGAGCGTGCGGGCGCT-TGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
514 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * ** ** * *
5275821 GGATCGGTCGGGTCCCCTTCTATGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGAT
579 GGATCGATCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGAT
*
5275886 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGAAGGCGTG
644 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--G--GGC--G
* * *
5275951 CAGGCATTACGCCGGCCCGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
703 --GGCACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
5276016 TTAGGCACATCTTCATATTTCTGCATGACACATG-CATTTTTTAATGGCTTGTAAATTCATACAA
766 TTAGGCACATCTTCATATTTCTGCATGCCA-ATGCCA-TTTTT-ATGGCTTGTAAATTCATACAA
* * * *
5276080 TGGT-CCTTAAGCCTT-GCGTGAAGTTTCATCGCAAGATGATTCGTTTTCTATTTTTCACG
828 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * ** * *
5276139 ATCTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAACTTTTTTCAGAATGACTTTTGG-CCC---
1 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAA
* *
5276200 C---GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGGTAAAAACTAGAAG
66 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
5276262 TGTACAAGATTTTGTGACCATTCGAAGAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGC
131 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
5276327 AGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
196 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
5276392 AGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
261 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-ACA-----CCGGC
** * * * * * *
5276457 CCCCCGATCACCGGAACCCAAATGTCGTCGGTCAGGCTCTCTGGCGATGCTCCGGCGATGGTGCC
320 CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
* * *
5276522 CCGGCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCTAGCATGTGCTGCCGCAA-CC-C--T
385 CCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
*
5276583 -C-G---G---T---CT-GG--T---CT--G-AT-CTTAAACTGGGAATGAACTCCGTATGCCTA
450 CCGGTCCGATCTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * * **
5276627 AGTCAACTCACGAAACGAGCGTGCGAGCACTCAGCTGACCAGAGGGGCCGGATGTACAAGCCGGG
515 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * ** * * * *
5276692 GATCGGTAGGGTCCCCCTCTATGTGCTACCGATCCAGCTGCCGGAACCCTCGGTCTGGTCTGATC
580 GATCGATCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATC
* *
5276757 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGGGCGTGCGGGCAAACAGGT
645 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--------C--G-----A-GC
** * *
5276822 GGGCGGGCGGGCACTGTGCCGGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
694 GGGCGGGCGGGCACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* **
5276887 GGT-GATTTACGGTCA-A-CTTCATATTTCTGTGTGCCAATG-CATTTTTTAATGGCTTGTAAAT
759 GGTGGGTTTA-GG-CACATCTTCATATTTCTGCATGCCAATGCCA-TTTTT-ATGGCTTGTAAAT
* * *
5276948 TCATACAAT-GT-CCTTAAACCTT-ACGTGAAGTTTAATGGC-AGACG-CTCCTTTTCTATTTTT
820 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
*
5277008 CATG
885 CACG
* * ** * *
5277012 -TTTTTG-AAC-TTTGGCGGTTCAGGATTTTTTAAAATTTTTTCAGAAAGATTTTTGGCCCCAAA
1 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAA
* *
5277074 CTTGGTAGAAAACGT-ATCCTTGTATTTTTGTTGGCATCCACAAAAAAATTCAGCTAAAAAACTC
66 CTTGGTAG---ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT-AAAAACTC
*
5277138 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTAC
127 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
5277203 TGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAA-GGGGTCTAAGTTCTCGAGGTTTGATGAG
192 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
5277267 GGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCG
257 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-ACA---CC-
** * * *
5277332 GGCCCACCCGATCGTCGGAACCTGAATGCTGCCTGTCAGGTTCTCCGACGATGCTCCGACGATGG
317 GGCCC-CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGG
* * * * * * * *
5277397 TGCCTCGGCAAAGAAAAATATGGCACCAGCACATGTCTGAGCCGAACATGTGCTGCCACAACCCT
381 TGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
** *
5277462 CACTCTGGTCC-A--T---CT-----T--A----G--TG---A-ACTGGGAATGGAACTCCGTAT
446 CGGTCCGGTCCGATCTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT-GAACTCCGTAT
* * * *
5277504 GCCTAAGTCCAACCCAGCGAAATCAAGCGTCGCGAGGCGCTCAACCAGCCAGAGGGGTGGGATGC
510 GCCTAAGT-CAACCCA-CGAAA-CGAGCGT-GCG-GGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * * * * ***
5277569 GCAAGTCGAGGATCGATCGGGGTCCCCCTCTGCGTGCTACCGATCTTGTTTGTCATGACCCTCAG
570 GCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTATCGATCCTG-CTGCCGCAACCCTCA-
* * * *
5277634 GGGGTCTGGTCTCGATCTTAAGACTAGGATTGAACTTCGTATGCCTAAGCCAAACTGACTGAACG
632 ---GTCTGGTCT-GATCTT-AGACTGGGAATGAACTCCGTATGCCTAAGCC-AACCGAC-G-A--
* * * ** *
5277699 AACGGGCGGGTGGGCGGGTGGGCCACTACG-CTGGCCCAACAGAGACGCGGATAAAGCAAGTTCG
687 AACGAGC----GGGCGGGCGGG-CACTACGAC-GG-CC-AGAGAGACG-GGAT-GCGCAAG-CCG
*
5277763 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCCATATTTTTGCATGCCAATGCCATTT
741 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT-CATATTTCTGCATGCCAATGCCATTT
*
5277828 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGATTCATGGCAAGACGAC
805 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
5277893 TTGTTTTTCTATTTTTCATG
870 TCG-TTTTCTATTTTTCACG
** ** * *
5277913 ATTTTCAAAACTTTTTATGGTTCGGGATTTTTAAAAATTTTTTTGGACGGAGTTTTGGCCCCAAA
1 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAA
* * * *
5277978 CATGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAATTCGAAA
66 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
5278043 TGTACAAGATTCTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGC
131 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
5278108 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
196 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
5278173 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
261 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-ACA----CCGGCC
*
5278238 CCCC-ATCGTCGGAACCCTAATGCCGTCGGT-ATGGTTCTCCGACGA---T-----GA---TGCC
321 CCCCGATCGTCGGAACCCCAATGCCGTCGGTCA-GGTTCTCCGACGATGCTCCGACGATGGTGCC
* * * *
5278290 CGGGGGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGT
385 CCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * * * *
5278355 TCGGTCCGATTATAGACTGGGAGTGAACTTCATATGCTTAGACTGGGAGTGAACTCCGTATGCCT
450 CCGGTCCGA-TCTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * *
5278420 AAGTCAACCCATGAAACGAGCGTGTGGCCACTCAGTCAGCCAGAGGGGCGGGAAGCGCAAGCCGG
514 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * ** *
5278485 GGATCGACCGGGTCCCCCTCTGTGTGCTGT-GAATCCTTCTGCCGCAACCCTTGGTCTGGTCTAA
579 GGATCGATCGGGTCCCCCTCTGCGTGCTATCG-ATCCTGCTGCCGCAACCCTCAGTCTGGTCTGA
* * * *
5278549 TCTTAGATTGGGAATGAACTTCGTACGCCTAAGCCAACCGAGGAAACGAGCGGGAGGGCGGGCTG
643 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC----GGGC--G--G
5278614 GCGGGCACTAC-ACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
700 GCGGGCACTACGA-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
5278678 GTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
764 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
5278743 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
829 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * ** * *
5278803 ATTTTTGAAACATTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTAGCCCCGAA
1 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAA
* * *
5278868 CTTAGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGGTAAAAACTAGAAG
66 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
5278933 TGTACAAGATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
131 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
5278998 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGCTTGATGAGGGAT
196 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
5279063 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
261 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-ACA----CCGGCC
* * * ** * *
5279128 CTCCCAATTGCCGGAACCCCAATGCCACCAGTCAGGTTCTCCTG-CGATGCTACGACGATGGTGC
321 C-CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-GACGATGCTCCGACGATGGTGC
* * * * * *
5279192 CCCGACGAAGAAAAATGCGACACTAGCACATGCTCGAGCCCAGCATGTGCTGTCGCAA-CC-C--
384 CCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
5279253 T-C-G---G---T---CT-GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCT
449 TCCGGTCCGATCTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
*** * * * * * * *
5279297 AAGTCAACCGGTGAAATGAACGTGTGGGCTG-TCAGTCGGCCAGAGAGGCGGGATGTGCATGCCG
514 AAGTCAACCCACGAAACGAGCGTGCGGGC-GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * ** * * * * * * *
5279361 AGGATTGGCCGAGTCCCCCTCTGCATGCTATCGATCCTACTACCGTAACCCTC-GATCCGGTCAG
578 GGGATCGATCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCAG-TCTGGTCTG
* * *
5279425 ATCTTAGACTGGGAATGAACTCCGTATGCCTTAGCAAACCGACGAAACGAGCGGGCGGGCAGG--
642 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
* * * * *
5279488 ---CG--GGCCAGAGAGACGGGATGCGCAAGCCGTGCACCGATACGGTGGTAGGTGGGTTTAAGT
707 CTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
5279548 GCATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATCCAATGGTCCCTT
772 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* *
5279613 AAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTCCTATTTTTCACG
837 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
*** * *
5279665 ATTTTTGAAACTTTTTATAGTTCGGGATTTTTGAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAA
1 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAA
* * *
5279730 CTTGGTAGACATGATCCTTTTATTTTGTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
66 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
5279795 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGC
131 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
5279860 AGCAAACCTTTAAAATCTCAAATGCTCTTAAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
196 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * *
5279925 AGGGGGCTAATATAAGGGCCCAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCTTGCC
261 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-GACA---CC--GGC
* * * * *
5279990 CCCCCGACCGCCGGAACCCCAATACCGTCGGTCAGATTCTCCGACGATGCTCCGACGATGCTGCC
320 CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
* ** ** * ** *
5280055 CCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCGTAGTATGTGCTGTTGCAACCCTCAGT
385 CCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* *
5280120 CCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCT
450 CCGGTCCGATC-TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
5280185 AAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCCAGTGGGGCGGGATGCGCAAGCCGG
514 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * ** * ** * * **
5280250 GGATCCACCGGGTTCCCCTTTATGTGCTATCGATCCTGCTACTACGACCCTCAGTCCGGTCCAAT
579 GGATCGATCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGAT
* * * * *
5280315 CTTAGACTGCGAATGAACTCCGTATGCCTAATCCAGCCGACGAAACGA----GTGGGCGGGCATT
644 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
* * *
5280376 TC-ATCGGCCAGAGGGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
709 ACGA-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* ** * * *
5280440 CACCTTCATATTTCTGTGTGCCAATGCCATTTTTATTGCTTGCAAATTCATACAACGGTCCCTTA
773 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* **
5280505 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCGTG
838 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
** * *
5280556 ATTTTCAAAAATTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCT-GAAGGAGTTTT-TCCCCTA
1 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT-TGGAAGGAGTTTTGGCCCC-A
* *
5280619 AACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTGAGCTAAAAACTCGA
64 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * * *
5280684 AGTGTACAAGATTTTGTGATCTTTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTA
129 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * *
5280749 GCAGCAAGCCTGTAAAATCTCAAATGCTCTTTAAGAGAGTGTGAGTTCTCGAGGTTTGATAAGGG
194 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * * *
5280814 AT-CGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGAACATCATATGCGCACACCCCCCCC
259 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-ACA------CC
* * * ** * **
5280878 GGCCCTCCCGATCATCGGAGCCCCAATACCACCGGTCAGGTTCTCCGACGATGCTCTGGTGATGG
317 GGCCC-CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGG
* * *
5280943 TGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCTAGCCCAGCATGTGCTGCCACAACCCT
381 TGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * * * *
5281008 TGGTCTGGTCCAATCTTAGACAGGGAATGAACTCTGTATGCTTAGATTGGGAATGAACT-CGTAT
446 CGGTCCGGTCCGATC-TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * * *
5281072 GCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAGCCGGCCAAAGGGGCAGGATGCACAAA
510 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * ** * *
5281137 TCAGGGATCCG-TCGGGTCCCGCTCTGCGTGCTGCCGATCCTGCTGTCGCAACACTCAGTCTGGT
575 CCGGGGAT-CGATCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCTGGT
5281201 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGAGGGCGG
639 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-C--GA--GCGG
* * * * **
5281266 GCGGGCGGGCACTAC-ACCGGCCAAAGATACGGGATGTGCAAGCTGTTAATCGATAGGGTGGTAG
696 GCGGGCGGGCACTACGA-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
5281330 GTGGGTTTAGGCACATCTTCACATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
760 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
5281395 CAATGG-CCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTCATTTTCTATTTTTCATG
825 CAATGGTCC-CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * * * *
5281459 ATTTTTAAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGAAAAGAGTTTTGGTCCCAAA
1 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAA
* * *
5281524 CTTGGTAGACGTGATCCTTGTAATTTTGTTGGCATGCTCAAAAAAATTCAGCTAAAAACTCGAAG
66 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
5281589 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATGGCTACTGGC
131 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
5281654 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
196 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
5281719 AGGGGGCCAATATAGGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-CA-CGGCCCCCCT
261 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGACACCGGCCCCCC-
* * * * *
5281782 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC-CTCGACGATGATACCCCGA
325 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC-CGACGATGGTGCCCCGG
* * * * * * * *
5281846 CGACGAAAAATACGACACTAGCACAAGCCCGAGCCTAGCATGTGCAGTCGCAACCCTCGGTCCAG
389 CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
** * * *
5281911 TTTGATCATAGTCTGGCAATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGT
454 TCCGATC-TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *** *
5281976 CAACCCATGAAACGAGTGTGCGGGCGCTCAGTCAGCCAGAGGGGCAGGATGCATTAGCCGAGGAT
518 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* *** * **
5282041 CAATCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGTAACAACCCTCAGTCCGGTCCAATCTTA
583 CGATCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTA
*
5282106 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCACTACGA
648 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGA
**
5282171 CGGTTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
713 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
5282236 TAATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
778 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* *
5282301 TCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACC
843 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* ** * *
5282347 ATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTTTAATTTTTTTGGAAGAAATTTTGGCCCCAAA
1 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAA
* * * *
5282412 CTTGGTAGTCGTGATCCTTATATTTTTTTTGGCATGCACAAAAAAATTGATCTAAAAACTCGAAG
66 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
5282477 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAAACACTTTAAGGGCTACTGGC
131 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
5282542 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGATTTCTCAAGGTTTGATGAGGGAT
196 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
5282607 GGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTAGC
261 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-ACA----CC-GGC
* * * ** * * * *
5282672 CCCTCCGATCATTGAAACCAAAATACCTTCGGTCAGGTTCTCCGGCAATGCTCCGACGATGGTGC
320 CCC-CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
* * * * * * *
5282737 CCCAGCGAAGAAAAATGCCGCACCATCACAAGACCAAGCCCAGCATGTGCTGCCGCAACCCTCGG
384 CCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * * **
5282802 TCTGGTCTGCTCTTGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATTACT
449 TCCGGTCCGATCTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * *
5282867 AAGTCAACCCACGAAATGAGTGTGTGGGTGCTCAGCCGGCCAGAAGGGCGGGATGCGTAAGCCAG
514 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * *
5282932 GGATC--T---G---------G-ATGCTATCGATCTTGCTGCCGCAACCCTC-GTTCTGGTTTGA
579 GGATCGATCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCAG-TCTGGTCTGA
* * *
5282981 TCTTAAACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCAG
643 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--GA--GCGGGCGGGCGG
* * * * *
5283046 GCACTATGCCGGCCTGAGAGACTGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
704 GCACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*** *
5283111 GGCACATCTTCATATTTCTATGTGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCT
769 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
5283175 CTTAAGCCTTCAGGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACG
834 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * *
5283230 ATTTTTGAAACTTTTTAG-GGTTCGAGATTTTTTAAAATTTTTTCGGATGGAGTTTTGGCCCCAA
1 ATTTTTGAAACTTTTT-GCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAA
* * * **
5283294 ACGTGGTAGACGTGATCCTTGTATTTTTGTTGGAATGCACAAAAAAATTTTGCTAAAAACTCGAA
65 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
5283359 GTGTACAAGATCTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
130 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
5283424 CAGCAAACCTATAAAATCTCAAATGGTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
195 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
5283489 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGA
260 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-ACA-----CCGG
* * * *
5283554 CCCCCCTGATCGTCGGAA-CCAATATGTCGTCGGTCAGGTTCTCCGGCAATGCTCCGACGATGGT
319 CCCCCC-GATCGTCGGAACCCCA-ATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGT
* * * * *
5283618 GCCCCGGTGAAGAAAAATGA-GGCACCATCACAAGCCCGAGCCCAACATGTGCTGCCGTAACCCT
382 GCCCCGGCGAAGAAAAAT-ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * *
5283682 CGGTCTGGTCCGATCTTGACTGGGAATAAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATT
446 CGGTCCGGTCCGATCTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * *** *
5283747 CCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGTAAGATGCGTAAGC
511 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * * * * * *
5283812 CGGGGATCTATCGGGACCCCCTCTGCATGCTGTCAATCCTACTACCCCAACCCTCGGTCTGGTCC
576 CGGGGATCGATCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCTGGTCT
5283877 GATCTTAGACTGGGAATGAACTCCGTATGC
641 GATCTTAGACTGGGAATGAACTCCGTATGC
5283907 TTAGACTGGG
Statistics
Matches: 7462, Mismatches: 929, Indels: 551
0.83 0.10 0.06
Matches are distributed among these distances:
861 6 0.00
862 552 0.07
863 6 0.00
864 2 0.00
866 1 0.00
867 1 0.00
868 1 0.00
869 62 0.01
870 171 0.02
871 9 0.00
872 4 0.00
873 23 0.00
874 5 0.00
875 27 0.00
876 36 0.00
877 203 0.03
878 70 0.01
879 224 0.03
880 184 0.02
881 14 0.00
882 31 0.00
883 605 0.08
884 123 0.02
885 10 0.00
886 13 0.00
887 39 0.01
888 671 0.09
889 84 0.01
890 379 0.05
891 637 0.09
892 243 0.03
893 187 0.03
894 482 0.06
895 443 0.06
896 303 0.04
897 276 0.04
898 85 0.01
899 37 0.00
900 50 0.01
901 304 0.04
902 155 0.02
903 487 0.07
904 98 0.01
905 9 0.00
906 22 0.00
907 39 0.01
908 2 0.00
909 8 0.00
910 4 0.00
911 7 0.00
912 20 0.00
913 8 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAA
CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGACACCGGCCCCCCG
ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCG
AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
CGATCTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
TCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGACGG
CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
Found at i:5283367 original size:883 final size:884
Alignment explanation
Indices: 5279383--5283797 Score: 5439
Period size: 883 Copynumber: 5.0 Consensus size: 884
5279373 GTCCCCCTCT
* * * *
5279383 GCATGCTATCGATCCTACTACCGTAACCCTCGATCCGGTC-AGATCTTAGACTGGGAATGAACTC
1 GCATGCTATCGATCCTGCTGCCGCAACCCTCG-TCTGGTCTA-ATCTTAGACTGGGAATGAACTC
* * *
5279447 CGTATGCCTTAGCAAACCGACGAAAC--GA--GCGGGCGGGCAGG-----CG--GGCCAGAGAGA
64 CGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGA
* * * * ** *
5279501 CGGGATGCGCAAGCCGTGCACCGATACGGTGGTAGGTGGGTTTAAGTGCATCTTCATATTTCTAC
129 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* *
5279566 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATCCAATGGTCCCTTAAGCCTTCACGTGAAGTT
194 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * ***
5279631 TCATGGCAAGACAACTCGTTTCCTATTTTTCACGATTTTTGAAACTTTTTATAGTTCGGGATTTT
259 TCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTT
* * * * *
5279696 TGAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTTTA-TTTTGTTT
324 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG-TT
5279760 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
388 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * *
5279825 GTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTTTAAAATCTCAAATGCTCTTA
453 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* *
5279890 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCCAGTACCAGC
518 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * * *
5279955 ACCCATCGCACATCATGTGCACACACCCCCTTGCCCCCCCGACCGCCGGAACCCCAATACCGTCG
583 ACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCGATCGTCGGAACCCCAATACCGCCG
* * * *
5280020 GTCAGATTCTCCGACGATGCTCCGACGATGCTGCCCCGGTGAAGAAAAATGTGGCACCAGCACAT
647 GTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC-GCGAAGAAAAATGCGGCACCAGCACAT
** * ** * ** *
5280085 GCCCGAGCGTAGTATGTGCTGTTGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTC
711 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
* *
5280150 CGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCG
776 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * *
5280215 CTCAACCGGCCAGTGGGGCGGGATGCGCAAGCCGGGGATCCACCGG
841 CTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGAT-CA-TGG
* ** * * * *
5280261 GTTCCCCTTTATGTGCTATCGATCCTGCTACTACGACCCTCAGTCCGGTCCAATCTTAGACTGCG
1 G-----C---A--TGCTATCGATCCTGCTGCCGCAACCCTC-GTCTGGTCTAATCTTAGACTGGG
* * * * * **
5280326 AATGAACTCCGTATGCCTAATCCAGCCGACGAAAC--GA------GTGGGCGGGCATTTCATCGG
55 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCGGGCACTACGCCGG
* * *
5280383 CCAGAGGGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCA
120 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * * *
5280448 TATTTCTGTGTGCCAATGCCATTTTTATTGCTTGCAAATTCATACAACGGTCCCTTAAGCCTTCA
185 TATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * ** *
5280513 CGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCGTGATTTTCAAAAATTTTTGCGGTT
250 CGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTT
* * *
5280578 CGGGATTTTTTAAAATTTTTTCTGAAGGAGTTTT-TCCCCTAAACTTGGTAGATGTGATCCTTGT
315 CGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC-AAACTTGGTAGACGTGATCCTTGT
* * * *
5280642 ATTTTTTTTGGCATGCACAAAAAAATTGAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCTT
379 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * *
5280707 TTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTAGCAGCAAGCCTGTAAAATCTCAA
444 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * * * *
5280772 ATGCTCTTTAAGAGAGTGTGAGTTCTCGAGGTTTGATAAGGGAT-CGGGGCCAATATAATGGCCA
509 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * *
5280836 AGTACCAGCACCCATCGAACATCATATGCGCACACCCCCCCCGGCCCTCCCGATCATCGGAGCCC
574 AGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCC-CCCGATCGTCGGAACCC
* * ** * *
5280901 CAATACCACCGGTCAGGTTCTCCGACGATGCTCTGGTGATGGTGCCCCGGTGAAGAAAAATACGG
636 CAATACCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC-GCGAAGAAAAATGCGG
* * * ** *
5280966 CACCAGCACATGCCCTAGCCCAGCATGTGCTGCCACAACCCTTGGTCTGGTCCAATCTTAGACAG
700 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTG
* * *
5281031 GGAATGAACTCTGTATGCTTAGATTGGGAATGAACT-CGTATGCCTAAGTCAACCCACAAAACGA
765 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * ** * *
5281095 GCGTACGGGCGCTCAGCCGGCCAAAGGGGCAGGATGCACAAATCAGGGATCCGTCGGG
830 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGAT-CAT--GG
* * * * *
5281153 TCCCGCTCTGCGTGCTGCCGATCCTGCTGTCGCAACACTCAGTCTGGTCTGATCTTAGACTGGGA
1 ----GC-ATGC-T-AT--CGATCCTGCTGCCGCAACCCTC-GTCTGGTCTAATCTTAGACTGGGA
*
5281218 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGAGGGCGGGCGGGCGGGCACTACAC
56 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GAGGGCGGGCGGGCGGGCACTACGC
* * * * **
5281283 CGGCCAAAGATACGGGATGTGCAAGCTGTTAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
117 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
5281348 TCACATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG-CCTCTTAAGCC
182 TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC-CTTAAGCC
* * *
5281412 TTCACGTGAAGTTTCATGGCAAGACTACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTGC
246 TTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGC
* * * *
5281477 AGTTCGGGATTTTTTAAAATTTTTTCGAAAAGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCT
311 GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* *
5281542 TGTAATTTTGTTGGCATGCTCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
376 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
5281607 CATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
441 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
5281672 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAGGGG
506 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
*
5281737 CCAAGTACCAGCACCCATCGCACATCATGTGCG--CA-----CGGCCCCCCTGATCGCCGGAACC
571 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-GATCGTCGGAACC
* * * * *
5281795 CCAATGCCGCCGGTCAGGTTCTCCGACGATGC-CTCGACGATGATACCCCGACGACGAAAAATAC
635 CCAATACCGCCGGTCAGGTTCTCCGACGATGCTC-CGACGATGGTGCCCCG-CGAAGAAAAATGC
* * * * * * ** * * *
5281859 GACACTAGCACAAGCCCGAGCCTAGCATGTGCAGTCGCAACCCTCGGTCCAGTTTGATCATAGTC
698 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGAC
* * *
5281924 TGGCAATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
763 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * ** *
5281989 GAGTGTGCGGGCGCTCAGTCAGCCAGAGGGGCAGGATGCATTAGCCGAGGATCAATCGGG
828 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATC-AT--GG
* *** * *
5282049 TCCCCCTCTGCGTGCTATCGATCCTGCTGTAACAACCCTCAGTCCGGTCCAATCTTAGACTGGGA
1 ---------GCATGCTATCGATCCTGCTGCCGCAACCCTC-GTCTGGTCTAATCTTAGACTGGGA
* * *
5282114 ATGAACTCCGTATGCCTAAGCCAACCGATGAAAC--GA--GCGGGCGGGCGGGCACTACGACGGT
56 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCGGGCACTACGCCGGC
* *
5282175 TAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAAT
121 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
*
5282240 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
186 ATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
** *
5282305 GTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACCATTTTTGAAACTTTTTGTGGTTC
251 GTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTC
** * * * * *
5282370 GGGATTTTTTTTAATTTTTTTGGAAGAAATTTTGGCCCCAAACTTGGTAGTCGTGATCCTTATAT
316 GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * *
5282435 TTTTTTTGGCATGCACAAAAAAATTGATCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
381 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* * *
5282500 GAAAAAAGTGTCCCCATTCCAAACACTTTAAGGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
446 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * *
5282565 GCTCTTTAAGGGGGTGTGATTTCTCAAGGTTTGATGAGGGATGGGGGGCCAATATAAGGGCCAAG
511 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * * **
5282630 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTAGCCCCTCCGATCATTGAAACCAAAA
576 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCC-CCGATCGTCGGAACCCCAA
** * * *
5282695 TACCTTCGGTCAGGTTCTCCGGCAATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATGCCGCAC
639 TACCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC-GCGAAGAAAAATGCGGCAC
* * * * *
5282760 CATCACAAGACCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGCTCTT-GACTGGGA
703 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGA
** * *
5282824 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATTACTAAGTCAACCCACGAAATGAGTG
768 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * ** *
5282889 TGTGGGTGCTCAGCCGGCCAGAAGGGCGGGATGCGTAAGCCAGGGATC-T-G
833 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCATGG
* * * * *
5282939 G-ATGCTATCGATCTTGCTGCCGCAACCCTCGTTCTGGTTTGATCTTAAACTGGGAATGAACTCT
1 GCATGCTATCGATCCTGCTGCCGCAACCCTCG-TCTGGTCTAATCTTAGACTGGGAATGAACTCC
* * *
5283003 GTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCAGGCACTATGCCGGCCTGAGAGAC
65 GTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGAC
* * **
5283068 TGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATG
130 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG
* *
5283133 TGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCAGGTGAAGTTT
195 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* *
5283197 CATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAG-GGTTCGAGATTTT
260 CATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-GCGGTTCGGGATTTT
* *
5283261 TTAAAATTTTTTCGGATGGAGTTTTGGCCCCAAACGTGGTAGACGTGATCCTTGTATTTTTGTTG
324 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* ** *
5283326 GAATGCACAAAAAAATTTTGCTAAAAACTCGAAGTGTACAAGATCTTGTGACCATTTGAAAAAAG
389 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* * *
5283391 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGGTTTTTA
454 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
5283456 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
519 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * *
5283521 CCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCTGATCGTCGGAA--CCAATATGTCGT
584 CCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCC-GATCGTCGGAACCCCAATA--CCGC
* * * * *
5283584 CGGTCAGGTTCTCCGGCAATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGAGGCACCATCAC
645 CGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC-GCGAAGAAAAATGCGGCACCAGCAC
* * * * *
5283649 AAGCCCGAGCCCAACATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTT-GACTGGGAATAAAC
709 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAC
* * *
5283713 TCCGTATGCTTAGACTGGGAATGAACTCCGTATTCCTAAGTCAACCCATGAAACAAGCGTGCGGG
774 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
*
5283778 CGCTCAGCCAGCCAGAGGGG
839 CGCTCAGCCGGCCAGAGGGG
5283798 TAAGATGCGT
Statistics
Matches: 3055, Mismatches: 401, Indels: 157
0.85 0.11 0.04
Matches are distributed among these distances:
878 1 0.00
879 1 0.00
880 74 0.02
881 5 0.00
882 4 0.00
883 580 0.19
884 112 0.04
886 1 0.00
887 3 0.00
888 538 0.18
889 7 0.00
890 56 0.02
891 522 0.17
892 167 0.05
893 1 0.00
894 5 0.00
895 255 0.08
896 255 0.08
897 6 0.00
898 1 0.00
899 1 0.00
900 3 0.00
901 3 0.00
902 4 0.00
903 402 0.13
904 48 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (884 bp):
GCATGCTATCGATCCTGCTGCCGCAACCCTCGTCTGGTCTAATCTTAGACTGGGAATGAACTCCG
TATGCCTAAGCCAACCGACGAAACGAGAGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGT
GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
ATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTT
AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATACCGCCGGTCA
GGTTCTCCGACGATGCTCCGACGATGGTGCCCCGCGAAGAAAAATGCGGCACCAGCACATGCCCG
AGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCATGG
Found at i:5283931 original size:26 final size:26
Alignment explanation
Indices: 5283880--5283932 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5283870 CTGGTCCGAT
*
5283880 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
5283906 CTTAGACTGGGAATGACCTGCATATG
1 CTTAGACTGGGAATGAACTCCATATG
5283932 C
1 C
5283933 CTTGGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:5283999 original size:185 final size:185
Alignment explanation
Indices: 5283676--5284091 Score: 555
Period size: 185 Copynumber: 2.3 Consensus size: 185
5283666 GTGCTGCCGT
*
5283676 AACCCTCGGTCTGGTCCGATCTT-GACTGGGAATAAACTCCGTATGCTTAGACTGGGAATGAACT
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * *
5283740 CCGTATTCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGTAAGATG
66 CCATATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCGCTCAGCCAGCCAGAGGGGCAAGATG
* * * *
5283805 CGTAAGCCGGGGATCTATCGGGACCCCCTCTGCATGCTGTCAATCCTACTACCCC
131 CGCAAGCCGGGGATCGACCGGGACCCCCTCTGCATGCTGTCAATCCTACTACCAC
*
5283860 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGACCT
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* ** * * * **
5283925 GCATATGCCTTGGTCAACCCATGAAACGAGCGTACGGGCGCTCTGCCGGCCAGAGGGGCGGGATG
66 CCATATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCGCTCAGCCAGCCAGAGGGGCAAGATG
* ** * *
5283990 CGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGTCAATCCTGCTGCCAC
131 CGCAAGCCGGGGATCGACCGGGACCCCCTCTGCATGCTGTCAATCCTACTACCAC
* ** *** *
5284045 AACCTTTAGTCTGGTATAATCTTAGATTGGGAATGAACTCCGTATGC
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
5284092 CTAAGCCAAC
Statistics
Matches: 201, Mismatches: 30, Indels: 1
0.87 0.13 0.00
Matches are distributed among these distances:
184 23 0.11
185 178 0.89
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.22
Consensus pattern (185 bp):
AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
CCATATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCGCTCAGCCAGCCAGAGGGGCAAGATG
CGCAAGCCGGGGATCGACCGGGACCCCCTCTGCATGCTGTCAATCCTACTACCAC
Found at i:5284806 original size:26 final size:26
Alignment explanation
Indices: 5284777--5284828 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
5284767 CGGTCTGATT
*
5284777 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
5284803 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
5284829 CTCGGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:5285708 original size:26 final size:26
Alignment explanation
Indices: 5285657--5285709 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5285647 CTGGTCCGAT
*
5285657 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
5285683 CTTAGACTGGGAATGACCTGCATATG
1 CTTAGACTGGGAATGAACTCCATATG
5285709 C
1 C
5285710 CTTGGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:5287204 original size:876 final size:883
Alignment explanation
Indices: 5283859--5292242 Score: 9886
Period size: 876 Copynumber: 9.4 Consensus size: 883
5283849 CCTACTACCC
* *
5283859 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGACC
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * ** * *
5283924 TGCATATGCCTTGGTCAACCCATGAAACGAGCGTA-CGGGCGCTCTGCCGGCCAGAGGGGCGGGA
66 TCCGTATGCCTAAGTCAACCCACGAAACGAGCG-AGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
** ** * * *
5283988 TGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGTCAATCCTGCTGCCACAACCTTTA
130 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCACAACCCTCA
** * *
5284053 GTCTGGTATAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGA-GCGG
195 GTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGG
* * *
5284117 GCGGGCGGGCACTACGCCGACCAGAGAGATGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGG
260 GC--GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * * * *
5284182 TGAGTTTAGGTACATCTTCATATTGCTGTGTGCCCATGCCATTTTTATGGCTTGCAAATTCATAC
323 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
5284247 AATGGTCCCTTCAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
388 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** * *
5284312 TTTCAAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
453 TTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
* * *
5284377 TGTTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
518 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
5284442 TACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGCAG
583 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
5284507 CAAACCT-TAAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGCTGAGGGATA
648 CAAACCTGT-AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* ** *** *
5284571 GCGGGCCAATATAAGCACCAAGTACCAGCACCCATCATGCATCATGTACGCACACCCCCCCGGCC
712 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCC
* * *
5284636 TCCCCGATCGTCGGAACCCCAATACCCAAGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCC
776 -CCCCGATCGTCGGAACCCCAAT-GCC---GTCAGG-T-T-C--AGA-GCTTCGGCGATGGTGCC
* * * * *
5284701 CCGATGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGTTGCTG
830 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * *
5284755 CAACCCTTGGTCCGGTCTGATTTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* ** * *
5284820 TCCATATGCCTCGGTCAACCCACGAAACGAGCGTA-CAGGCGCTCAGCCGACC-GAGGGGCGGGA
66 TCCGTATGCCTAAGTCAACCCACGAAACGAGCG-AGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * *
5284883 TGCGTAAGTCGGGGATCGGTC-GGTCCCCCTCTACGTGCTATCGATCCTGCTGCCACAACCCTCG
130 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCACAACCCTCA
* * *
5284947 GTCTGGTACAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACTGACGAAAGAGCGGGC
195 GTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA-A-C--G-
* * * *
5285012 AGGCGGGCGGGCGAGCACTACGTCGGCCAAAGAGACGGGAAGCGCAAGCCGTGGATCGATAGGGT
254 AGGCGGGC--GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
*
5285077 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCAATTTTTATGGCTTGTAAAT
317 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
* *
5285142 TCATAGAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTCGTTTTCTATTTTT
382 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* ** * *
5285207 --C-A----TG--A----TT----TTTGAGATTTTTTAAAATTTTTTC-AGAATTATTTTTGGCT
447 CACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCC
5285254 CCAAACTTGGTAGACGTGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
511 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * **
5285318 CGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTGCAGACACTTTAATTACTA
576 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * * *
5285383 CAGGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGCTGA
641 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
** * *
5285448 GGGATAGGGGGCCAATATAAGCACCAAGTACCAGCACCCATCGCGCATCATGTACGCACACCCCC
706 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * * *
5285513 CGACCTCCCTGATCGTCGGAACCCCAATACCCAAGTCAGGTTCTCCGGCGATGCTCCGGCGATGG
771 CGGCC-CCCCGATCGTCGGAACCCCAAT-GCC--GTCAGG-T-T-C--AGA-GCTTCGGCGATGG
* **
5285578 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCGGAGCCCAGCATGTGCTGCTA
826 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* *
5285636 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGACC
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * ** * *
5285701 TGCATATGCCTTGGTCAACCCATGAAACGAGCGTA-CGGGCGCTCTGCCGGCCAGAGGGGCGGGA
66 TCCGTATGCCTAAGTCAACCCACGAAACGAGCG-AGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
** ** * * *
5285765 TGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTGTCAATCCTGCTGCCACAACCTTTA
130 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCACAACCCTCA
** * *
5285830 GTCTGGTATAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGTG-G
195 GTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-GCG
* * * *
5285894 GCGGGCGGGCACTACGCCGACCAGAGAGATGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGG
259 G-GCGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * *
5285959 TGAGTTTAGGTACATCTTCATATTTCTGTGTGCCCATGCCATTTTTATGGCTTGTAAATTCATAC
323 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
5286024 AATGGTCCCTTCAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
388 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** * *
5286089 TTTCAAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
453 TTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
* * * *
5286154 TGTTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAATTCGAAGTG
518 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
5286219 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAG
583 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * * *
5286284 CAAACCTGTAAAATCTCAAATGCTTTTTAAGGAGGTGCGAGTTCTCGAGGTTTGATGAGGGATTG
648 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
** * * * *
5286349 GGGTTCAATATAAGGGCCAAGTACCAGCACGCATCGTACAACATGTGTGCACACCCCCCGGCCCC
713 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* * * * * * * ** * *
5286414 CCAATCGCCAGAAACCCAGTGCCGTC-GG-TCAG-G-TTCGTCGGTAATGCTCCGGCGAAGAAAA
778 CCGATCGTCGGAACCCCAATGCCGTCAGGTTCAGAGCTTCGGCGATGGTGCCCCGACGAAGAAAA
* *
5286475 ATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCA
843 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * * * *
5286516 CAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCTTATGCTTAGAATAGGAATAAAC
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * *
5286581 TCTGTATGCCTAAGTCAACCCACGAAACGAGCGAGCGAGTGCTCAGCTGACCAGAGGGGCGGGAT
66 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGAGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * **
5286646 GCACAAGCCGGGGATC-GTCGGGTCCCCCTCTCCGTGCTGTCGATCCTGCTGCCACAACCCTTGG
131 GCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCACAACCCTCAG
* * * *
5286710 TCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAGGCCAACCAATGAAACGA-GTGGG
196 TCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGG
5286774 C-C-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
261 CGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* ** * *
5286837 GTTTAGGCACATCTTCACATTTCTATGTGCCAATGCCATTTTTATAGCTTGGAAATTCATACAAT
326 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* ** *
5286902 GGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGATAACTCGTTTTCTATTTTTAACGATTTT
391 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * *
5286967 TGAAACTTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTGAAAGGATTTTTTGCCCTAAACTTG
456 TGAAAC-TTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTG
* *
5287032 GTAGACGTGATCCTCGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCG-AGATGT
520 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG-TGT
* *
5287096 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACATTTTAATGGCTACTGGCAGC
584 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
5287161 AAACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
649 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
** * * *
5287226 GGGCCAATATAAGCACCAAGTACCAGCACCCATCGCATATCATGTACGCACAACCCCCCGACCTC
714 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCGGCC-C
* * *
5287291 CCTGATCGTCGGAACCCCAATACCCAAGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCG
777 CCCGATCGTCGGAACCCCAAT-GCC--GTCAGG-T-T-C-A-GA-GCTTCGGCGATGGTGCCCCG
*
5287356 ACGAAGAAAAATGCGGCACCAGCACATGCCCGA-CCCAGCATGTGCTGCTG
833 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* *
5287406 CAGCCCTCGGTCTAGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
1 CAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* ** ** * *
5287470 CTCCATATGCCTCGGTCAACCCACGAAACGAGCTTGCGGGCGCTCAGTCGACC-GAGGGGCGGGA
65 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGAGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* *
5287534 TGCGTAAGCTGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCACAACCCTCA
130 TGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCACAACCCTCA
* ** *
5287599 GTCTGGTACAATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACTGACGAAACGAGCGGG
195 GTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-C--G
* * * *
5287664 CAGGCGGGCAGGCGGGCGGCCTAGCACTACGCCGCCCAAAGAGACGGGAAGCGCAACCCGTGGAT
254 -AGGC--G--GGC--GCGG----GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* *
5287729 CGATAGGGTGGTAGGTGGGTTTAGGTACACCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
308 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGG
*
5287794 CTTGTAAATTCATAGAATGGTCCCTTAAGCCTTCACG-GTAAGTTTCATGGCAAGACGACTCGTT
373 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG-AAGTTTCATGGCAAGACGACTCGTT
* * * * * **
5287858 TTTTATTTTTCATGATTTTTGAAA-TTTTTTCGGTTCGAGATTTTTTAAAATTTTTTC-AGAATT
437 TTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGA-AAGG
* * * *
5287921 ATTTTTGGCTCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCA
501 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
5287986 GCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAATTGTCCCCATTTTAGACACT
566 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * * * *
5288051 TTAATTGCTACTGGCAGCAAACTTGTAAAATCTCAAACGTTCTTTAAGGGGGTGTG-GTTCTTGG
631 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
5288115 GGTTTGAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
696 GGTTTG-ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* ** *
5288180 CGCACACCCCCCCGACCCCACCGATCACCGAAACCCCAATGTCGTCGATCAGGTTCTCCAGTGAT
760 CGCACA-CCCCCCGGCCCC-CCGATCGTCGGAACCCCAATG-C--CG-TCAGG-T-T-CA--GA-
* ** *
5288245 GCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGTC-TGT
813 GCTTCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG-CATGT
*
5288309 GCTGTCG
877 GCTGCCG
* *
5288316 CAACCCTCGGTCTGAT-TCGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAA
1 CAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* *
5288380 CTCCGTATGCCTAAGTCAACCCAC-AGAACGAGCGTGCGGGCGCTCAGCAGGCCAGAGGGGCGGG
65 CTCCGTATGCCTAAGTCAACCCACGA-AACGAGCGAGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * * * *
5288444 ATACGCAAGTCGGGGATC-GACTGGGACCCCCTCTACGTGCTG-CTGATCCTGCTGCTGA-AACC
129 ATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTACGTGCTGTC-GATCCTGCTGC-CACAACC
** *
5288506 CTTGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAG
191 CTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-
* * * *
5288571 CGGGCGAGCGGGCCGGTGGGTGGGCGGGCACTGCGTCGGCCAGAGAGGCGGGATGCGCAAGCCGT
252 ----CGA---GG-C----GG-GCGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* *
5288636 GGATCGATAGGGTGGTAGGTGGGTTTCAGG-ACATCTTCATATTTCTGCCTGCCAATACCATTTT
304 GGATCGATAGGGTGGTAGGTGGGTTT-AGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
* ***
5288700 TATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCTTATGAAGTTTCATGGCAAGACGACT
368 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
5288765 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGATTCT-GGATTTTTTAAAATTTTTTCGG
433 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTT-TGGGATTTTTTAAAATTTTTTCGA
* * * *
5288829 AAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTCTTTTTGTTGGCATGCACAAATAAA
497 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
5288894 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAAA
562 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
5288959 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTC
627 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
5289024 TCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATCAATCGCACATCAT
692 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
5289089 GTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATACTGCCGATCAGGTTCTACGAC
757 GTGCGCACA-CCCCCCGG-CCCCCCGATCGTCGGAACCCC-A-A-TGCCG-TCAGG-T-T-C-A-
* * * * *
5289154 GATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCTGAGGCCAGCAT
811 GA-GCTTCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
*
5289219 GTACTGCCG
875 GTGCTGCCG
*
5289228 TAACCCTCGGTCT-G---G-TC-----C---G-AT---CT---TA-G---A-A-TGGGAATGAAC
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* **
5289267 TGCGTATGCCTAAGTCAACCCACGAAACGAGCCTGCGGGCGCTCAG-CGGCCAGAGGGGCGGGAT
66 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGAGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * ** * * * *
5289331 GCACAAGTCGGGGATCAATCGGGTCCCCCTCCATGTGCTGTCGATCCTGCTACCGCAACCCTCAG
131 GCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCACAACCCTCAG
* ** * *
5289396 TCTGATCTGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAACGGGC
196 TCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A--GGC
* * * *
5289461 TGGCAGGCGGGCGGGCACTACGCCAGCCAGAGAGATGGGATGCGTAAGCCGTAGATCGATAGGGT
258 --G--GGC--GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * * * * *
5289526 GGTAGGTTGGTTTAGGGATATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAGT
317 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
* *
5289591 TCATACAATGGTCCCTTAAGCGTTCACAGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTT
382 TCATACAATGGTCCCTTAAGCCTTCAC-GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * * *
5289656 TCATGATTTTTGAAACTTTTTGCGGCTCGGGATTTTGTAAAATTATTTCAAAAGGAGTTTTGGCC
446 TCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCC
* * * * *
5289721 CCAAACTTGTTTGACGTCATCCTTGTATTTTTGTTGGCATCCACAAAAAAATTTAGCTAAAAACT
511 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
5289786 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
576 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
5289851 CTGGCAGCAAACCTGTAAATTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA
641 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* *
5289916 AGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCC
706 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * *
5289981 CGGCCCCCCGATCGCCAGAACCCCAATGCTGCCAGACAGGTTCTCTGACGATGCTCCGGCGATGG
771 CGGCCCCCCGATCGTCGGAACCCCAA---TGCC-GTCAGG-T-TC--A-GA-GCTTCGGCGATGG
* * *
5290046 TGCCCCGACGAAGAAAAAAGTC-ACACCAGCACATGCCTGAGCCCAGCATGTGCTGCCG
826 TGCCCCGACGAAGAAAAATG-CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * *
5290104 TAA-GC-C--TC--G---G-TC-----C--GG--T---CT--G-AT-TTTAGACTGGGAATGAAC
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * * **
5290143 TCCGTATGCCTAAGTAAACCGACGAAACAAGCGTGCGGGCACTCAGTAGGCCAGAGGGGCGGGAT
66 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGAGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * ** * * ** **
5290208 GCGCAAGCCGGGGATCGGTCGGGTCCCCTTCTGCCTGCTACCAATCTTGCTATCACAACCCTTGG
131 GCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCACAACCCTCAG
* * *
5290273 TCTGGTTCTATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-GCGGG
196 TCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGG
* * * * *
5290337 CGGGTGGGCACTACGCGGGCCAGAGAGACGGGATGCGTAAGTCGTGGGTCGATAGGGTGGTAGGT
261 C--GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * * *
5290402 GGGTTTAGGCATATCTTCAAATTTCTGTGTGCCAATGTCATTTTTGTGGCTTGTAAATTCATACA
324 GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
5290467 ATGGTCCCTTAAGCCTTCACGTGTAGTTTC-TCGGCAAGACGAATCGTTTTCTATTTTTCATGAT
389 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT-GGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * *
5290531 TTTTGAAACTTTTTACAGTTCGTGATTTTTTAAAATTTTTTGGGAAA-GAGTTTTGGCCCCAAAC
453 TTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTT-CGAAAGGAGTTTTGGCCCCAAAC
* *
5290595 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCATAAAAAAATTCAGCTAAAAACTCGAAGT
517 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
5290660 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
582 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
5290725 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
647 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * **
5290790 GGGGGCCAATATAAGGGCCACGTACGAGCACTGATCGCACATCATGTGCGCACACCCCCCGGCCC
712 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CC
* * *
5290855 CCCCGATCATCGAAACCCCAATGCTACCGGTCAGGTTCTCTGACGATGCTCCGGCGATGGTGCCC
776 CCCCGATCGTCGGAACCCCAATG---CC-GTCAGG-T-TC--A-GA-GCTTCGGCGATGGTGCCC
* * * * *
5290920 CGGCAAAGAAAAATGTGGCACCAGCACATGCCTGAACCCAGCATGTGCTGCCG
831 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* *
5290973 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAC
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * *
5291038 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCTAGAGGGGCGGGAT
66 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGAGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * ** ** * * **
5291103 GCACAAGTCGGGGATCGACCGGGTCCCCCTCTGTGTGCTG-CTGATCCTACTACCGTAACCCTCA
131 GCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTC-GATCCTGCTGCCACAACCCTCA
* * * *
5291167 GTCTGGTCTAATTTTAGACTGGGAATGAACT-CGTATGCCTAAGCCGACCGACGAAATGAGCGGG
195 GTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---GG
* * *
5291231 CGAGCAGGCGGGCGGGCACTACGCCAGCCAGAGAGATGGGATGCGCAAGCCGTAGATCGATAGGG
257 C--G--GGC--GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * * * * *
5291296 TGGTAGGTTGGTTTAGGGATATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAG
316 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
* * * *
5291361 TTCATACAATGGTCCTTTAAGCGTTCACATGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTT
381 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * * *
5291426 TCATGATTTTTGAAACTTTTTGCGGCTCGGGATTTTGTAAAATTATTTCAAAAGGAGTTTTGGCC
446 TCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCC
* * *
5291491 CCAAACTTGGTTGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACT
511 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
5291556 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
576 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * * * *
5291621 CTGGCAGTAAACCCGTAAATTCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCAAGGTTTGATGA
641 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* *
5291686 AGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCACATCATGTGCGCACACCCCC
706 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* **
5291751 CTGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGAT
771 C-GG-CCCCCCGATCGTCGGAACCCCAAT---GCC-GTCAGG-T-T-C-A-GA-GCTTCGGCGAT
* * * * * * *
5291816 GGTGCCCCGGCGAAGAAAAATGTGGCACCAACGCTTGCCCGAGCCCAACATGTGCTACCG
824 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* *
5291876 CAACCCTCGGTCTGGT-TCGATCTTTGAATGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
1 CAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* *
5291940 CTCCGTATGCCTAAGTCAACCCACGAAATGAGC-ATGCGGGCGCTCAG-CGGCCAGAGGGGTGGG
65 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGA-GCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* *** * * * *
5292003 ATGCACAAGCCGGGGATCAACCGGGTCCCCCTCTATGTGCTGTTGATCCTGCTACCGCAACCCTC
129 ATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCACAACCCTC
* * ** *
5292068 AGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAGCGG
194 AGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--GG
* * *
5292133 CCGGGCGGGCGGGCA-TATGCCGGCCAGAGAGACGGGATGTGCAAGTCGTGGATCGATAGGGTGG
257 -CGGGC--GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * * *
5292197 TAGGTGGGTTTAGGGACATCTTGATATTTATGCCTGCCAATACCAT
319 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
5292243 GTGCGCACAC
Statistics
Matches: 6555, Mismatches: 739, Indels: 386
0.85 0.10 0.05
Matches are distributed among these distances:
866 2 0.00
867 1 0.00
868 333 0.05
869 242 0.04
870 1 0.00
871 11 0.00
872 3 0.00
873 4 0.00
874 6 0.00
875 188 0.03
876 605 0.09
877 273 0.04
878 351 0.05
879 99 0.02
880 185 0.03
881 194 0.03
882 68 0.01
883 301 0.05
884 62 0.01
885 115 0.02
886 59 0.01
887 3 0.00
888 5 0.00
889 30 0.00
890 208 0.03
891 48 0.01
892 5 0.00
893 75 0.01
894 328 0.05
895 178 0.03
896 108 0.02
897 2 0.00
898 88 0.01
899 15 0.00
900 3 0.00
901 179 0.03
902 569 0.09
903 234 0.04
904 1 0.00
905 1 0.00
906 2 0.00
907 18 0.00
908 287 0.04
909 68 0.01
910 296 0.05
911 288 0.04
912 377 0.06
913 19 0.00
914 2 0.00
915 10 0.00
916 2 0.00
917 1 0.00
918 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (883 bp):
CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGAGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
GCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCACAACCCTCAG
TCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGCGGG
CGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
TGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGG
TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCG
ATCGTCGGAACCCCAATGCCGTCAGGTTCAGAGCTTCGGCGATGGTGCCCCGACGAAGAAAAATG
CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
Found at i:5287463 original size:26 final size:26
Alignment explanation
Indices: 5287427--5287479 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5287417 CTAGTTCGAT
*
5287427 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
5287453 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
5287479 C
1 C
5287480 CTCGGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:5288373 original size:26 final size:26
Alignment explanation
Indices: 5288337--5288389 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5288327 CTGATTCGAT
5288337 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
5288363 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
5288389 C
1 C
5288390 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:5291030 original size:26 final size:26
Alignment explanation
Indices: 5290994--5291046 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5290984 CTGGTCCGAT
5290994 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
5291020 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
5291046 C
1 C
5291047 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:5294100 original size:26 final size:26
Alignment explanation
Indices: 5294071--5294123 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
5294061 TCCGGTCGAT
5294071 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGA-TGGGGAATGAACTCCGTATG
5294097 CTTAGATGGGGAATGAACTCCGTATG
1 CTTAGATGGGGAATGAACTCCGTATG
5294123 C
1 C
5294124 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGATGGGGAATGAACTCCGTATG
Found at i:5294998 original size:26 final size:26
Alignment explanation
Indices: 5294962--5295014 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5294952 CTGGTCCATT
5294962 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5294988 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5295014 C
1 C
5295015 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5295832 original size:26 final size:26
Alignment explanation
Indices: 5295796--5295845 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
5295786 TGCGCAAGCC
5295796 GTGGGTTTAGGTACATCTTCATGTAG
1 GTGGGTTTAGGTACATCTTCATGTAG
5295822 GTGGGTTTAGGTACATCTTCATGT
1 GTGGGTTTAGGTACATCTTCATGT
5295846 TTCTGTGTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.18, C:0.12, G:0.30, T:0.40
Consensus pattern (26 bp):
GTGGGTTTAGGTACATCTTCATGTAG
Found at i:5295993 original size:732 final size:711
Alignment explanation
Indices: 5294251--5296462 Score: 2866
Period size: 731 Copynumber: 3.1 Consensus size: 711
5294241 AGTCTGATTG
* ** *
5294251 ATCTTAGACAGGGAATGAACTCCGTATGCCT-AGCCCAACCGACGAAACGA-GCGGGCGGGCGGG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGAACAACCGACGAAACGAGGCAGGCGGGCGGG
* *
5294314 CACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA-
66 CACTA-GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATATGGTGGTAGGTGGGTTTAG
***
5294378 GTCACATCTTCATATTTCTGCT-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACATTC
130 GT-ACATCTTCATATTTCTG-TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
5294442 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAA
193 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAA
* * * * *
5294507 ACTTTCTGCAGTTTGG----GATTTTTTAAAATTTTTTCGAAGGATTTTTGGCCCCAAACTTGGT
258 ACTTTTTACGGTTCGGATTTGATTTTTTAAAA-TTTTTCGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
5294568 GGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTGAGCTAAAAACTCGAAGTGTACA
322 AGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * * * *
5294633 AGATTTTGTGACCATTTGAAAAAAATGACCCCATTTGAGACAGTTTATTGGCTACTGGCAGCAAA
387 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
5294698 CCTGTAAAATCTCAAATGCTCTTTAAGCGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGC
452 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGC
*
5294763 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGTCCCCCCG
517 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCG
* * * * *
5294828 ATCGTCAGAACCCCAATACCGTCAGTCAGGTTCTCTGGCGATGCTCCGGCAATGGTGCCCCGATG
581 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCAATGGTG-CCCGGTG
* * * *
5294893 AAGAAAAATGTGACACCAACACATGCCCCAACCTAGCATGTGCTGCCGTAACCCTCGGTCTGGTC
645 AAGAAAAATGTGACACCAACACATGCCCGAGCCAAGCATGTGCTACCGTAACCCTCGGTCTGGTC
5294958 CA
710 CA
* * *
5294960 TTCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTA-A----GAA-CAAC--CG-A---C---G--AA-
** * * * * * *
5295025 CCACGAAACAAGCGTGCGGGCGCTCAACCGGCCAGAGAGACGGGATGCGCAAGCCATTGATCGAT
48 --ACGAGGCAGGCGGGCGGGCACT-AGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
** ** *
5295090 ATGGTGGTAGGTGCATTTAGCCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
110 ATGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTG
5295155 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
175 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * *
5295220 TATTTCATGATTTTCCACACTTTTTACGGTTCGG----GATTTTTTAAAATTCTTTCGAAAGGAG
240 TTTTTCATGATTTTCAAAACTTTTTACGGTTCGGATTTGATTTTTTAAAATT-TTTCG-AAGGAG
* *
5295281 TTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAACATTCAGC
303 TTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* *
5295346 TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTT
368 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
5295411 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
433 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
*
5295476 TTTGATGAGGGATAGAAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
498 TTTGATGAGGGATAG-GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* *
5295541 ACACTCCCCCCGGCCCCCCCGATCGTTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGC
562 ACAC-CCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGC
* * *
5295606 TCCGGCGATGGTGCCTCGGTGAAGAAAAATATGGCACCAACACATGCCCGAGCCAAGCATGTGCT
625 TCCGGCAATGGTGCC-CGGTGAAGAAAAATGTGACACCAACACATGCCCGAGCCAAGCATGTGCT
* * * *
5295671 ACCGTAACCGTTGGTTTGATCCA
689 ACCGTAACCCTCGGTCTGGTCCA
*
5295694 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-ACAACCGATGAAACGAGTGGGCAGGCGGGC
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGAACAACCGACGAAACGA---GGCAGGCGGGC
* * * * ** *
5295758 GGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGGTTTAGGTACATCTTCATGTAGG
63 GGGCACTA-GCCGGCCAGAGAGACGGGATGCGCAAGCCGT-GG-AT-CG-ATATGGT--GGTAGG
*
5295823 TGGGTTTAGGTACATCTTCATGTTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
121 TGGGTTTAGGTACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
5295888 GATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
186 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
** * *
5295953 TTTTGAAACTTTTTACGGTTCGG----GATTTTTTGAAATTTTTTTGGAAGGAGTTTTGG--CCA
251 TTTCAAAACTTTTTACGGTTCGGATTTGATTTTTT-AAA-ATTTTTCGAAGGAGTTTTGGCCCCA
*
5296012 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
314 AACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * * *
5296077 AGTGTACAAGATTTTGTGACCATTTGAAAAACGTGTTCCCATTTCAGACACTTTAATGGCTGCTA
379 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
5296142 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTGTCGAGGTTTGATGAGGG
444 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
*
5296207 ATAGGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCC
509 ATA--GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* * * *
5296272 GG-CCCCCGATCGCCGGAACCTCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCTGGCAATGGT
572 GGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCAATGGT
* * * * * *
5296336 GCCCTGGCGAAGAAAAATGTGACACCAACACATGCCCGAGCCCAGCATCTACTATCGCAACCCTC
637 GCCC-GGTGAAGAAAAATGTGACACCAACACATGCCCGAGCCAAGCATGTGCTACCGTAACCCTC
* **
5296401 GGTCCGGTCTG
701 GGTCTGGTCCA
* * *
5296412 ATCTTAGA-TGGGGAATGAACTCCGTAAGCCTAAG-TCAACCCACGAAACGAG
1 ATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGAACAACCGACGAAACGAG
5296463 CGTGCGGGTG
Statistics
Matches: 1319, Mismatches: 138, Indels: 86
0.85 0.09 0.06
Matches are distributed among these distances:
709 28 0.02
711 1 0.00
713 4 0.00
715 3 0.00
716 46 0.03
717 3 0.00
718 162 0.12
719 2 0.00
720 202 0.15
721 51 0.04
722 168 0.13
723 7 0.01
724 3 0.00
725 3 0.00
727 5 0.00
728 1 0.00
729 1 0.00
730 6 0.00
731 209 0.16
732 204 0.15
733 55 0.04
734 155 0.12
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (711 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGAACAACCGACGAAACGAGGCAGGCGGGCGGG
CACTAGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGG
TACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACT
TTTTACGGTTCGGATTTGATTTTTTAAAATTTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGAT
GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGT
CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCAATGGTGCCCGGTGAAGAAA
AATGTGACACCAACACATGCCCGAGCCAAGCATGTGCTACCGTAACCCTCGGTCTGGTCCA
Found at i:5296179 original size:720 final size:707
Alignment explanation
Indices: 5294251--5296462 Score: 2939
Period size: 732 Copynumber: 3.1 Consensus size: 707
5294241 AGTCTGATTG
* ** *
5294251 ATCTTAGACAGGGAATGAACTCCGTATGCCT-AGCCCAACCGACGAAACGA-GCGGGCGGGCGGG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGAACAACCGACGAAACGAGGCAGGCGGGCGGG
* *
5294314 CACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA-
66 CACTA-GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATATGGTGGTAGGTGGGTTTAG
***
5294378 GTCACATCTTCATATTTCTGCT-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACATTC
130 GT-ACATCTTCATATTTCTG-TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
5294442 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAA
193 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAA
* * * * * * * *
5294507 ACTTTCTGCAGTTTGGGATTTTTTAAAATTTTTTCGAAGGATTTTTGGCCCCAAACTTGGTGGAT
258 ACTTTTTACGGTTCGGGATTTTTTAAATTTTTTTGGAAGGAGTTTTGG-CCCAAACTTGGTAGAT
* *
5294572 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTGAGCTAAAAACTCGAAGTGTACAAGAT
322 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * * *
5294637 TTTGTGACCATTTGAAAAAAATGACCCCATTTGAGACAGTTTATTGGCTACTGGCAGCAAACCTG
387 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
5294702 TAAAATCTCAAATGCTCTTTAAGCGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGCCAAT
452 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAAT
*
5294767 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGGTCCCCCCGATCG
517 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCG
* * * * *
5294832 TCAGAACCCCAATACCGTCAGTCAGGTTCTCTGGCGATGCTCCGGCAATGGTGCCCCGATGAAGA
581 TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCAATGGTG-CCCGGTGAAGA
* * * *
5294897 AAAATGTGACACCAACACATGCCCCAACCTAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCA
645 AAAATGTGACACCAACACATGCCCGAGCCAAGCATGTGCTACCGTAACCCTCGGTCTGGTCCA
* * *
5294960 TTCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTA-A----GAA-CAAC--CG-A---C---G--AA-
** * * * * * *
5295025 CCACGAAACAAGCGTGCGGGCGCTCAACCGGCCAGAGAGACGGGATGCGCAAGCCATTGATCGAT
48 --ACGAGGCAGGCGGGCGGGCACT-AGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
** ** *
5295090 ATGGTGGTAGGTGCATTTAGCCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
110 ATGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTG
5295155 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
175 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * * * *
5295220 TATTTCATGATTTTCCACACTTTTTACGGTTCGGGATTTTTTAAAATTCTTTCGAAAGGAGTTTT
240 TTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTT-AAATTTTTTTGGAAGGAGTTTT
* *
5295285 GGCCCCAAACTTGGTAGATGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAACATTCAGCTAAA
304 GG-CCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* *
5295350 AACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATG
368 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
5295415 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
433 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
*
5295480 ATGAGGGATAGAAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
498 ATGAGGGATAG-GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* *
5295545 TCCCCCCGGCCCCCCCGATCGTTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG
562 -CCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCG
* * *
5295610 GCGATGGTGCCTCGGTGAAGAAAAATATGGCACCAACACATGCCCGAGCCAAGCATGTGCTACCG
625 GCAATGGTGCC-CGGTGAAGAAAAATGTGACACCAACACATGCCCGAGCCAAGCATGTGCTACCG
* * * *
5295675 TAACCGTTGGTTTGATCCA
689 TAACCCTCGGTCTGGTCCA
*
5295694 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-ACAACCGATGAAACGAGTGGGCAGGCGGGC
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGAACAACCGACGAAACGA---GGCAGGCGGGC
* * * * ** *
5295758 GGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGGTTTAGGTACATCTTCATGTAGG
63 GGGCACTA-GCCGGCCAGAGAGACGGGATGCGCAAGCCGT-GG-AT-CG-ATATGGT--GGTAGG
*
5295823 TGGGTTTAGGTACATCTTCATGTTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
121 TGGGTTTAGGTACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
5295888 GATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
186 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
**
5295953 TTTTGAAACTTTTTACGGTTCGGGATTTTTTGAAATTTTTTTGGAAGGAGTTTTGG-CCAAACTT
251 TTTCAAAACTTTTTACGGTTCGGGATTTTTT-AAATTTTTTTGGAAGGAGTTTTGGCCCAAACTT
*
5296017 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
315 GGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * * *
5296082 ACAAGATTTTGTGACCATTTGAAAAACGTGTTCCCATTTCAGACACTTTAATGGCTGCTAGCAGC
380 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
5296147 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTGTCGAGGTTTGATGAGGGATAGG
445 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA--
*
5296212 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGG-CC
508 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC
* * * *
5296276 CCCGATCGCCGGAACCTCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCTGGCAATGGTGCCCT
573 CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCAATGGTGCCC-
* * * * * * *
5296341 GGCGAAGAAAAATGTGACACCAACACATGCCCGAGCCCAGCATCTACTATCGCAACCCTCGGTCC
637 GGTGAAGAAAAATGTGACACCAACACATGCCCGAGCCAAGCATGTGCTACCGTAACCCTCGGTCT
**
5296406 GGTCTG
702 GGTCCA
* * *
5296412 ATCTTAGA-TGGGGAATGAACTCCGTAAGCCTAAG-TCAACCCACGAAACGAG
1 ATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGAACAACCGACGAAACGAG
5296463 CGTGCGGGTG
Statistics
Matches: 1315, Mismatches: 145, Indels: 80
0.85 0.09 0.05
Matches are distributed among these distances:
709 28 0.02
711 1 0.00
713 4 0.00
715 3 0.00
716 46 0.03
717 3 0.00
718 162 0.12
719 2 0.00
720 202 0.15
721 51 0.04
722 177 0.13
724 1 0.00
725 3 0.00
727 5 0.00
728 1 0.00
729 1 0.00
730 4 0.00
731 200 0.15
732 211 0.16
733 55 0.04
734 155 0.12
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (707 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGAACAACCGACGAAACGAGGCAGGCGGGCGGG
CACTAGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGG
TACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACT
TTTTACGGTTCGGGATTTTTTAAATTTTTTTGGAAGGAGTTTTGGCCCAAACTTGGTAGATGTGA
TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGA
ACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCAATGGTGCCCGGTGAAGAAAAATG
TGACACCAACACATGCCCGAGCCAAGCATGTGCTACCGTAACCCTCGGTCTGGTCCA
Found at i:5297348 original size:26 final size:26
Alignment explanation
Indices: 5297298--5297348 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
5297288 GATCCAATCC
* *
5297298 TAGATTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGCATGCT
* *
5297324 TAGACTGGGAATGTACTCTGCATGC
1 TAGACTGGGAATGAACTCCGCATGC
5297349 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGCATGCT
Found at i:5298226 original size:26 final size:26
Alignment explanation
Indices: 5298197--5298249 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5298187 CCGGTCCGAT
5298197 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5298223 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5298249 C
1 C
5298250 CTAAGTCGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5298741 original size:896 final size:898
Alignment explanation
Indices: 5295694--5304746 Score: 11727
Period size: 900 Copynumber: 10.2 Consensus size: 898
5295684 GTTTGATCCA
* * * * *
5295694 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCGATGAAACGAGTGGGCAGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
** * * * *** *
5295759 GGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGGTTTAGGTACATCTTCATGTAGGT
66 GGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGT-GG-AT-CG-ATAGGGT--GGTAGGT
* * ** *
5295824 GGGTTTAGGTACATCTTCATGTTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACG
125 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
5295889 ATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
190 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * *
5295954 TTTGAAACTTTTTACGGTTCGGGATTTTTTGAAATTTTTTTGGAAGGAGTTTTGG--CCAAACTT
255 TTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
5296017 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
320 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * * *
5296082 ACAAGATTTTGTGACCATTTGAAAAACGTGTTCCCATTTCAGACACTTTAATGGCTGCTAGCAGC
385 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
5296147 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTGTCGAGGTTTGATGAGGGATAGG
450 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-G
*
5296212 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGG-CC
514 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCC
* * * * *
5296276 CCCGATCGCCGGAACCTCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCTGGCAATGGTGCCCT
578 CCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCC
* * * * * ** *
5296341 GGCGAAGAAAAATGTGACACCAACACATGCCCGAGCCCAGCATCTACTATCGCAACCCTCGGTCC
643 GACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCC
*
5296406 GGTCTGA---T---CT-----T--A----G-A----T-G---GGGAATGAACTCCGTAAGCCTAA
708 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * *
5296445 GTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCAGCCAGAGGGGCGGGATGCGTAAGCCGGGG
773 GTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * *
5296510 ATCGATCGGGTCCCCATCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGTCCGGTCTG
838 ATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGGTCTG
* * *
5296571 ATCTTTGACTGGTAATAAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGTGAGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGC--G-G-GCGGGC-
* *
5296636 GGCTGGCGGGCACTACACCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAG
61 -G--GGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * *
5296701 GTGGGTTTTGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
123 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
5296766 CAATGGTCCCTTAAGCCTTAATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
188 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * * *
5296831 TTTTTGAAACTTTTTGAGGTTCGGGATTTTTTTAAATTTTTTCAGATGGAGTTTTGGCCCCAAAC
253 TTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* *
5296896 TTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGT
318 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
5296961 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAGTTTAATGGCTACTGGCA
383 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
5297026 GCAAACCTGTAAAATCTCAAATGCTCTTTTAGGGGGTGTGAGTTCTCAAGGTTCGATGAGGGATA
448 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * *
5297091 GGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGTGCACACCCCCCCGACC
513 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCC
* * * ** *
5297156 CTCTCGATCGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCC
577 C-CCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCC
* * * * * *
5297221 CCGATGAAGAAAAATGTGACACCAACACATGCCCGAGCCCAACATGTGCTGCCGCAACTCTCGGT
641 CCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGT
* ** * * * * *
5297286 CCGATCCAATCCTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGTACTCTGCATGCCT
706 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
5297351 AAGTCAACCCACGAAACGAGCGTACGGGTGCTTAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGG
771 AAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* ** * ** * * * *
5297416 GGATCGATCGGGTCCCCCTCCACGTGCTGCCGATCCTACTATCGCAACCCTTGGTTCAGT-TCG
836 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGGTCT-G
* * *
5297479 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGCCGGGCAGGCG
1 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAAC--G-AG-CGGGCGGGCG
* * * *
5297544 GGCGGGCACTACATCGGCTAGAGAGACAGGATGTGCAAGCCGTGGATCAATAGGGTGGTAGGTGG
62 GGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
5297609 GTTTAAAG-ACATCTTCATATTTCTAGGTGCCAGTGCCATTTTTATGGCTTGTAAATTCATACAA
127 GTTT-AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
5297673 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTATATTTTTCATGATTT
191 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * *
5297738 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
256 TTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* *
5297803 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACCAAAAAATTCAGCTAAAAACTCGAAGTGTA
321 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
5297868 TAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
386 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * *
5297933 AACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGACTTCTTGAGGTTTGATGAGGGATACGG
451 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
5297998 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCTGGCCCCCC
516 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
** * ** * * *
5298063 GATCATCGGAACCCCAATGCCGCCTATCAGGTTCTCCGGTGATGCCCCGGCGATGGTGCCCCAAC
581 GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGAC
*
5298128 GAAGAAAAATGCGGCACCAGCACAT-CCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGT
646 GAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGT
*
5298192 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
711 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * ** *
5298257 GACCCATGAAACGAGCGTGCGAGTGCTCAGCCGGCCAAAGGGGCGGGATATGCAAGTCGGGGATC
776 AACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * *
5298322 GGT-GGGTTCCCCTCTGTGTGCTACCGATCCTGCTACCGCAACCCTCGATCCGGTCTG
841 GGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGGTCTG
* * * * *
5298379 ATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGTGGGCGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* * * *
5298444 GGCACTACGTCGGCCAGAAAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGCGTTT
66 GGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
5298509 AGCCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACGATGGTC
131 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
5298574 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCCTTTTCTATTTTTCACGATTTTGGAA
196 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * * * *
5298639 ACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTGAAAGGATTTTTAGCCCGAAACCTGGTAGA
261 ACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
5298704 CGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTTAGCTAGAAACTCGAAGTGTACAAGA
326 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
5298769 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGCCTACTGGCAGCAAACTT
391 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
5298834 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGCGATAGGGGGCCA
456 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
*
5298899 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCACCTGGCCCCTTCG
521 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CC-GGCCCC-CCG
* *
5298964 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACG
582 ATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACG
* * ** **
5299029 AAGAAAAATACGGCACCAACACATGCTCGAGCCCAGCATGTGCT-ATGTAACCCTCGGTCTAGTC
647 AAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTC
* * * *
5299093 CGATCTTAGATTGGGAATGAACTTCGTATACTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
712 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
** * * * *
5299158 ATGCACAAAACGAGCGTGC-GGTGCTCAGCCGGCCAGAGGGGTGGGATGCACAAGCAGGGGATCG
777 ACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * ** * *
5299222 GTCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTGCTACAACCCTCGATTCGATCTG
842 GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGGTCTG
*** * * ** *
5299279 ATCTTAGACTAAAAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGAACGGGCAGGCG
1 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* * * *
5299344 TGCACTACATCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGGTAGGGTGGTAGGTTGGTTT
66 GGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
**
5299409 AGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
131 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
5299474 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
196 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * *
5299539 ACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGGGTTTTGGCCCCAAACTTGGAAGA
261 ACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
5299604 CGTGATCCTTGTATTTTTTTTGGCGTGCACAAAAAAAATTCAGTTAAAAACTCGAAGTGTACAAG
326 CGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
5299669 ATGTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAACCC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
5299734 TGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
455 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * *
5299799 AATAGAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGGGCACACCCCCCCGGCCCCTTCGA
520 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCC-CCGA
* * * *
5299864 TCGCCTGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCAGTGATGGTGCCCCGACGA
583 TCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGA
* * * * **
5299929 AGAAAAATGCGGCATCAACACATGCTCGAGCCCAGCATGTGCTGTCGTAACACTCGGTCAAGTCT
648 AGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCT
* * *
5299994 GATCTTAGACTGGGAATGAACTCCGTATCCTTAGACTGGGAATGAACTCCGCATGCCTAAGTTAA
713 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
** *
5300059 AGCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCGGGGGATCGG
778 CCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
* * * * * * * *
5300124 TCAGGTCCCCCTCTACGTGCTGCTGATCCTCCTACTGCAACCCTC-AGTCTGGTCTA
843 TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGA-TCCGGTCTG
* * *
5300180 ATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCG
1 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* * *
5300245 AGCACTACACCGGCCAGAGAGACTGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
66 GGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* ** * * * *
5300310 AGGCACATTTTCATATTTCTGTGTGCCAATACCATTTTTATGGCTTGTAAAATCGTACTATGGTC
131 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
5300375 CCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCGTTTTCTA-TTTTCACGATTTTTGAA
196 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * *
5300439 ACTTTTTGCGGTTCGGCATTTTTTTAAATTTTTTCGGAATGAGTTTTGGCCCC-AACTTGGTAGA
261 ACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
5300503 CGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGA
326 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
5300568 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAACAAACCT
391 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
5300633 GTAATATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCA
456 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * *
5300698 ATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGTGCACACCCCCCGACCCCCTGATCG
521 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCG
* * *
5300763 CCGGAACCTCAATGCCATTGGTCAGGTTCT-C--CGA--------CGA---T-----------GA
586 CCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGA
* * * * *
5300803 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAGTCCGGTCTAAT
651 AAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCTGAT
* * *
5300868 CTTAGACTGGGAATGAACTCCGTATGGTTAGTCTGGGAATGAACTCCGTATGCCTACGTCAACCC
716 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * ** ** *
5300933 ACGAAATGAACGTGCGGGCGCTCAACCGGCTAGAGGGGTGGGATGCTTAAGTTGGGGCTCGGTC-
781 ACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCG
* * * * * ** * **
5300997 GATCCCCCTCTGTGTGCTGTCAATCCTCCTGCTACAACCCTCGGTCTAGTCTG
846 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGGTCTG
* * * *
5301050 ATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCTAACCGACGAAATGA----GCGGG-TGG-G
1 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* *
5301108 TG--CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
66 GGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
5301171 AGGCACATCTTCATATTTCTGA-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 AGGCACATCTTCATATTTCT-ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
5301235 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
195 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * *
5301300 AACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGGGTTTTGGCCCCAAACTTGGAAG
260 AACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
5301365 ACGTGATCCTTGTATTTTTTTTGGCGTGCACAAAAAAAATTCAGTTAAAAACTCGAAGTGTACAA
325 ACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
5301430 GATGTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTGCTGGCAGCAAAC
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
5301495 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGT
454 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
5301560 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACTCCCCCCTCGGCCCCTCT
519 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCC-CGGCCCCCCG
* * ** *
5301625 ATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATTGTGCCCCGACG
582 ATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACG
* * * * *
5301690 AAGAAAAATGCGACACCAACACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGATCAGGTC
647 AAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTC
* *
5301755 TGATCTTAGACTGAGAATGAACT-TGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
712 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
** * * * * * *
5301819 ATGCATGAAACGAGCGTGCGGGTGCTCA-CCGTCTAGAGGGACAGGATGCGCAAGCCGAGGATC-
777 ACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * *
5301882 GCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGATCTG
842 GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGGTCTG
* * *
5301939 GTCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCTACGAAAATC-AGCGGGCGGGCGGG
1 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACG-AAA-CGAGCGGGCGGGCGGG
*
5302003 CGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGCGGGT
64 CGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
5302068 TTAGGCACATCTTCGTATTTTTGA-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
129 TTAGGCACATCTTCATATTTCT-ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
5302132 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGAAAGACAACTCGTTTTTTATTTTTCACAATTTTT
193 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* *
5302197 GAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTCCCAAACTTGGT
258 GAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
5302262 AGACGTAATCCTTGTATTTTTGTTGGCATGCATAACAAAATTCAGCTAAAAACTGGAAGTGTACA
323 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
5302327 AGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTGCTGGCAGCAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
5302392 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGG
453 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
5302457 CCAATATAAGGGCCAAGTACCAGCAACCCATCGCACATCATGTGCGCACACCCCCCCG-ACCCCG
518 CCAATATAAGGGCCAAGTACCAGC-ACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCG
* * * * * *
5302521 ATTGCCGTAACCCCAATACCGTCGGTCAGGTTCTCCGACGATGCACCGGCGATGGTGCCCCGACA
582 ATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACG
5302586 AAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTC
647 AAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTC
5302651 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
712 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * *
5302716 ACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCTGA-GGGTGTGATACGCAAGTCGGGTATC-
777 ACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * * * * *
5302779 GCCGAGTCCCCCTTTGCGTGCTACCGATCCTGGTGCCGTAACCCTTGATCGGGTCTG
842 GTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGGTCTG
* * *
5302836 ATCTTA-ACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAACGGGCTGGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GG--
* ** * * *
5302900 GACGGGCACTGCGCCGGCCAGAGAGACGCGATGCGCAAGCCGTAGCTCGATAGGGTGGTAGGTGG
63 G-CGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
5302965 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
127 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
** *
5303030 GGTCCCTTAAGCCTTCACACGAAGTTTCATGGCAA-A-GACTCGTTTTCTATTTTTCACGATTTA
192 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * * * * *
5303093 CGAAACATTTTGCGGTTTGAGAATTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACCTGG
257 TGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * *
5303158 TAGACGGGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTAC
322 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
5303223 AAGATTTTGTGACCATTTGATAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGCCAGCAA
387 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
5303288 ACCTGTAAAA--TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGTATAAGGG
452 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
5303351 GCTAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCACACACACCCCCTCGGCCCC
517 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG--CGCACACCCCC-CGGCCCC
* * * ** *
5303416 CC-ATCGCCGGAACCCTAATGCCGCCGGTCAGGTTATCCGATGATGCTCCGACGATGGTG-CCCG
579 CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCG
** * *
5303479 GTGAAGAAAAATGCGGCACCAACACATGCCCGAGCCTAGCATGTGCTGCTGTAA----C---CC-
644 ACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCG
5303536 -T-TGATC-----C---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAG
709 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * * *
5303583 TCAACCCATGAAATGAGCGTGTGGGTGTTCAGTCGGCCAGAGGGGTGGGATGCGGAAGCCGGGGA
774 TCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * * * **
5303648 TCGGTCGGGTCCACCTCTGCATGCTGTCGATCCTACTGCTGCAACGCTC-AGTCTAGTCTG
839 TCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGA-TCCGGTCTG
* * *
5303708 ATCTTAGAATGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGTGGGTTGGCAGGCG
1 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGA--GCG--GGCGGGCG
* * *
5303773 GGCGGGCACTACCTCAGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGG
62 GGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * * *
5303838 GTTTATGCATATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAAT
127 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
5303903 GGTCCCTTAAGCCTTCACATGAAGTTTCATGGC-A-ATGACTCGTTTT-TCACTTTTCACGATTT
192 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT-ATTTTTCACGATTT
*
5303965 TTAAAACTTTTTGCGGTTTGGGATTTTTTAAAAATTTTCTT-GGAAGGAGTTTTGGCCCCAAACT
256 TTGAAACTTTTTGCGGTTTGGGATTTTTT-AAAATTTT-TTCGGAAGGAGTTTTGGCCCCAAACT
* * * *
5304029 TTGTAGATGTGATCCTTGTATTTTT-TTGGCATGCATAAAAAAATTCAGCTAAAAACTTGAAGTG
319 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
5304093 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAA
384 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
5304158 CAAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAG
449 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
5304223 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGTGCACACCCCCCGACCCC
514 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
** * * * *
5304288 CTAATCGCCGGAACCTCAATGCCATTGGTCAAGTTCT-C--CGA--------CGA---T------
579 CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCG
* * * *
5304333 -----GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTTCG
644 ACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCG
* * *
5304393 GTCTAATCTTAGACTGGGAATG-ACTCCGTAT-CGTTAGTCT-GGAATGAACTCCGTATG-CTAC
709 GTCTGATCTTAGACTGGGAATGAACTCCGTATGC-TTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * * * **
5304454 GTCAACCAACGAAATGAACGTGCGGGCGCTCAACCGGCTATGAGGGGTGGGATGCGTAAGTTGGG
773 GTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCA-GAGGGGCGGGATGCGCAAGCCGGG
* * * *
5304519 G-TC--TCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCGACCCTC-AGTCTGGTCCG
837 GATCGGT-CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGA-TCCGGTCTG
* *
5304579 ATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
** * * * * *
5304644 GGCACTACGCCGGCTAGAGAGACAGAATGCGCAAACTGTGGATCGATAGGGTGGTAGGTGGGTTT
66 GGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
5304709 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
131 AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
5304747 CCTGCTGCCG
Statistics
Matches: 7210, Mismatches: 811, Indels: 320
0.86 0.10 0.04
Matches are distributed among these distances:
849 44 0.01
853 1 0.00
856 1 0.00
858 1 0.00
859 5 0.00
861 161 0.02
862 66 0.01
863 39 0.01
864 200 0.03
865 10 0.00
866 36 0.00
867 104 0.01
869 42 0.01
870 121 0.02
871 283 0.04
872 101 0.01
873 422 0.06
874 57 0.01
875 95 0.01
876 2 0.00
877 53 0.01
878 1 0.00
879 177 0.02
880 60 0.01
881 200 0.03
882 119 0.02
883 2 0.00
884 2 0.00
885 42 0.01
886 5 0.00
887 1 0.00
888 3 0.00
889 80 0.01
890 89 0.01
891 81 0.01
892 1 0.00
893 4 0.00
894 20 0.00
895 93 0.01
896 738 0.10
897 412 0.06
898 396 0.05
899 635 0.09
900 780 0.11
901 681 0.09
902 79 0.01
903 9 0.00
904 467 0.06
905 2 0.00
906 1 0.00
907 1 0.00
908 180 0.02
909 1 0.00
910 2 0.00
911 1 0.00
912 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
GGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
ACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCG
CCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGA
AAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCTGAT
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCG
GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGGTCTG
Found at i:5299133 original size:26 final size:26
Alignment explanation
Indices: 5299097--5299147 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5299087 CTAGTCCGAT
* *
5299097 CTTAGATTGGGAATGAACTTCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
5299123 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
5299148 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:5300898 original size:26 final size:26
Alignment explanation
Indices: 5300869--5300919 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5300859 CGGTCTAATC
5300869 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
*
5300895 TTAGTCTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
5300920 CCTACGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:5302684 original size:26 final size:26
Alignment explanation
Indices: 5302655--5302707 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5302645 CCGGTCTGAT
5302655 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5302681 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5302707 C
1 C
5302708 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5304932 original size:193 final size:196
Alignment explanation
Indices: 5304549--5304919 Score: 509
Period size: 193 Copynumber: 1.9 Consensus size: 196
5304539 GTGCTGTCGA
* * *** *
5304549 TCCTGCTGCCGCGACCCTCAGTCTGGTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGC
1 TCCTGCTGCCGCAACCCTCAATCCAATCCAATCTTAGACTAGGAATGAACTCCATATGCCTAAGC
*
5304614 CAACCGACGAAACAAGCGGGCGGGCGGGCGGGCACTACGCCGGCTAGAGAGACAGAATGCGCAAA
66 CAACCGACG-AACAAGCGAGCGGGCGGGCGGGCACTACGCCGGCTAGAGAGACAGAATGCGCAAA
*
5304679 CTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
130 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
5304744 TT
195 TT
* * * *
5304746 TCCTGCTGCCGCAACCCTCAATCCAATCCAATCTTAGTCTGGGAATGAACTCCGTATGCCTCAGC
1 TCCTGCTGCCGCAACCCTCAATCCAATCCAATCTTAGACTAGGAATGAACTCCATATGCCTAAGC
* * * * *
5304811 CAATCGACG-A-AA-CGAGTGGGCGGGCGGGCACTATGCCGG-TCAGAGAGACGGGATGCAG-AA
66 CAACCGACGAACAAGCGAGCGGGCGGGCGGGCACTACGCCGGCT-AGAGAGACAGAATGC-GCAA
* *
5304871 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTT
129 ACCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
5304920 TTGTGTGCCA
Statistics
Matches: 153, Mismatches: 19, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
192 1 0.01
193 85 0.56
194 3 0.02
195 1 0.01
197 63 0.41
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.22
Consensus pattern (196 bp):
TCCTGCTGCCGCAACCCTCAATCCAATCCAATCTTAGACTAGGAATGAACTCCATATGCCTAAGC
CAACCGACGAACAAGCGAGCGGGCGGGCGGGCACTACGCCGGCTAGAGAGACAGAATGCGCAAAC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
T
Found at i:5305530 original size:26 final size:26
Alignment explanation
Indices: 5305494--5305552 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 26
5305484 CAATCTTAGT
*
5305494 TGGGAATCAACTCCGTATGCTCAGAC
1 TGGGAATCAACTCCGCATGCTCAGAC
*
5305520 TGGGAATCAACTCCGCATGCTTAGAC
1 TGGGAATCAACTCCGCATGCTCAGAC
5305546 TGGGAAT
1 TGGGAAT
5305553 AAATTTCGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (26 bp):
TGGGAATCAACTCCGCATGCTCAGAC
Found at i:5305565 original size:26 final size:26
Alignment explanation
Indices: 5305494--5305565 Score: 90
Period size: 26 Copynumber: 2.8 Consensus size: 26
5305484 CAATCTTAGT
*
5305494 TGGGAATCAACTCCGTATGCTCAGAC
1 TGGGAATAAACTCCGTATGCTCAGAC
* * *
5305520 TGGGAATCAACTCCGCATGCTTAGAC
1 TGGGAATAAACTCCGTATGCTCAGAC
* *
5305546 TGGGAATAAATTTCGTATGC
1 TGGGAATAAACTCCGTATGC
5305566 CTAAGTCAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (26 bp):
TGGGAATAAACTCCGTATGCTCAGAC
Found at i:5307312 original size:26 final size:26
Alignment explanation
Indices: 5307283--5307335 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5307273 CTGGTTCGAT
*
5307283 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
5307309 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
5307335 C
1 C
5307336 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:5307598 original size:159 final size:159
Alignment explanation
Indices: 5307309--5307675 Score: 430
Period size: 159 Copynumber: 2.3 Consensus size: 159
5307299 ACTCTGTATG
* *
5307309 CTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGTGCTCAGC
1 CTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACAAAACGAGCGCGCGAGTGCTCAGC
* * * * * * * *
5307374 AGGCTAGAGGGGTGAAATGTGGAAGTCGGGGATCGATCGGGTCCTCCTCTACGAGCTGCCGATCC
66 AGACCAGAGGGGTGAAATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTACGAGCTACCAATCC
* *
5307439 TACTACCGCAACCCTCTGTCCGGTCCAAT
131 TACTACAGCAACCCTCAGTCCGGTCCAAT
* ** * * *
5307468 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCGTAAAATGAGCGCGTGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACAAAACGAGCGCGCGAGTGCTCAGC
* * * * *
5307533 CGACCAGAGTGGTTG-GATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCAATC
66 AGACCAGAG-GGGTGAAATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTACGAGCTACCAATC
* * *
5307597 CTGCTACAGTAACCCTCAGTCCGGTCTAAT
130 CTACTACAGCAACCCTCAGTCCGGTCCAAT
* * * * * *
5307627 CTTAGATTGTGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAG
1 CTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACAAAACGAG
5307676 TAGGTGGGCG
Statistics
Matches: 171, Mismatches: 36, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
159 167 0.98
160 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACAAAACGAGCGCGCGAGTGCTCAGC
AGACCAGAGGGGTGAAATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTACGAGCTACCAATCC
TACTACAGCAACCCTCAGTCCGGTCCAAT
Found at i:5308372 original size:26 final size:26
Alignment explanation
Indices: 5308336--5308386 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
5308326 GGTCTGATCA
*
5308336 TAGACTGGGAATGAACTCCGTATGCT
1 TAGAATGGGAATGAACTCCGTATGCT
* *
5308362 TAGAATGGGAATGAATTTCGTATGC
1 TAGAATGGGAATGAACTCCGTATGC
5308387 CTAAATCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGAATGGGAATGAACTCCGTATGCT
Found at i:5309438 original size:893 final size:886
Alignment explanation
Indices: 5307468--5309813 Score: 3266
Period size: 893 Copynumber: 2.6 Consensus size: 886
5307458 CCGGTCCAAT
* *** * * *
5307468 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCGTAAAATGAGCGCGTGGGTGCTCAGC
1 CTTAGAATGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * **
5307533 CGACCAGAGTGGTTGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCAATCC
66 CGAGCAGAGAGG-CGGATGTGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTA-CAATCC
* * * *
5307598 TGCTACAGTAACCCTCAGTCCGGTCTAATCTTAGA-TTGTGAATGAACTCCATATGCCTAAGCCA
129 TGCTGCA-CAACCCTCAGTCCGGTCTAATCTTAGACTAG-GAATGAACTCCGTATGCCT-AGCCA
* * ** * *
5307662 ACCGACGAAACGAGTAGGTGGGCGGACGGGCAGGCACCACGCCGACCAGAGAGACGGGATGCGCA
191 ACCGACGAAAAGAGTGGGTGGGCGGACGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*
5307727 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCC
* *
5307792 ATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCGTCACGTGAAGTTTCATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
5307857 CAACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
386 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * * *
5307922 TTGGAACGAATTTTGGCCCCAAACTTGGTAGACGTGATCGTTGTATTTTTTTTTGGCATGCACTA
451 TTGGAAGGAGTTTTGGCTCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCAC-A
**
5307987 AAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCAT
514 AAAAAATTCAGCTAAAAACTCAAAGCATACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCAT
5308052 TTCAGACACCTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAACGGGGTGT
579 TTCAGACACCTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAACGGGGTGT
*
5308117 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCCGCACCCATCGCA
644 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *** * * *
5308182 CATCATGTGCGCACACCCCCCGCCCCCCAATCGTTGGAACCCCAATGCCACCGGTCAGGTTCTCT
709 CATCATGTGCACACACCCCCCGCCCCCCAATCACCGGAACACCAATGCCACCGGTCAGGTTCCCC
*
5308247 GGCGATGGTGTCCCGACGAAGAAAAATGCACCACCAACACATGCCCGAGCCCAGCATGTGCTGCC
774 GGCGATGGTGTCCCGACGAAGAAAAATACACCACCAACACATGCCCGAGCCCAGCATGTGCTGCC
*
5308312 GCAACCCTCGATCTGGTCTGATCATAGACTGGGAATGAACTCCGTATG
839 GCAACCCTCGATCTGGTCTGATCATAGACTGGGAATGAACTCCATATG
* *
5308360 CTTAGAATGGGAATGAA-TTTCGTATGCCTAAATCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 CTTAGAATGGGAATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * *
5308424 CCG-GCCAGAGAAGCGTGATGTGCAAGTCGGGGTTCGGTCGGGTCTCCCTCTGTGTGCTGTCAAT
65 CCGAG-CAGAGAGGCG-GATGTGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT-ACAAT
* * * ** * * *
5308488 CCTGTTGCTGCAACCCTTAGTCTAGTCCAATCTTAGACTGGGAATGAAGTCCGTATGCCTCAGCC
127 CCTGCTGC-ACAACCCTCAGTCCGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCT-AGCC
* * * *
5308553 AACCGATGAAATGAG-GGGTGGACGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
190 AACCGACGAAAAGAGTGGGTGGGCGGACGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
5308617 AAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTATGCACATCTTCATATTTCTTTGTGCCAATGC
255 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGC
5308682 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
320 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
5308747 ACGACTCGTTTTCTATCTTTCACGATTTTTAAAATTTTTTATGGTTCGGGATTTTTTAAAATTTT
385 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* *
5308812 TTTGGAAGGAGTTTTGGCTCCAAATTTGGTA-ACGTGATCCTTGTATTTTTGCTGGCATGCACAA
450 TTTGGAAGGAGTTTTGGCTCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * * *
5308876 AAAAATTCAGCCAAAAACTCAGAGCATATAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCATT
515 AAAAATTCAGCTAAAAACTCAAAGCATACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
5308941 TCAGACACTTTAATGGCTACTGGCAGCAACCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
580 TCAGACACCTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAACGGGGTGTG
*
5309006 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCGTCGCAC
645 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*
5309071 ATCATGTGCACACAATCCCCCCCGGCCCACCCGATCACCGGAACACCAATGCCACCGGTCAGGTT
710 ATCATGTGCACAC-A--CCCCCC-GCCC-CCCAATCACCGGAACACCAATGCCACCGGTCAGGTT
* * ** ** *
5309136 CCCCGGTGATGGTG-CCCTGGCGAAGAAAAATACGGCACCAACACATGCTTGAGGCCAGCATGTG
770 CCCCGGCGATGGTGTCCC-GACGAAGAAAAATACACCACCAACACATGCCCGAGCCCAGCATGTG
* * * *
5309200 CTGTCGCAACCCTTGATCTGGTCTGATCTTAGACTGGGAATGAACTTCATATG
834 CTGCCGCAACCCTCGATCTGGTCTGATCATAGACTGGGAATGAACTCCATATG
* *
5309253 CTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCAGC
1 CTTAGAATGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * *
5309318 CGAGCAGAGGGGCAGGATATACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTACAAATCC
66 CGAGCAGAGAGGC-GGATGTGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTAC-AATCC
* * *
5309383 TGCTGTCACAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAGGCCAA
129 TGCTG-CACAACCCTCAGTCCGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTA-GCCAA
* * * * *
5309448 CTGACGAAAAGAGTGGGCGGGCAGACGGGTGGGCACTACGCCGGCCATAGAGATGGGATGCGCAA
192 CCGACGAAAAGAGTGGGTGGGCGGACGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
5309513 GTCGTGGATCCATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
* * * * *
5309578 TTTTTATGGCTTTTAAATTCATACAATCGTCCCTTAAGCCTTGACGCGAAGTTTCATGGCAAGAT
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
5309643 GACTCGTTCTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
387 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
** ** * *
5309708 CAGAAGGAGTTTTGG-TCCCAAACTTCTTAGACATGATCCTTGTATTTTTGTTGGCATGCACCAA
452 TGGAAGGAGTTTTGGCT-CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* ** *
5309772 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
516 AAAATTCAGCTAAAAACTCAAAGCATACAAGATTTCGTGACC
5309814 NNNNNNNNNN
Statistics
Matches: 1275, Mismatches: 158, Indels: 39
0.87 0.11 0.03
Matches are distributed among these distances:
888 197 0.15
889 16 0.01
890 13 0.01
891 262 0.21
892 172 0.13
893 299 0.23
894 250 0.20
895 66 0.05
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (886 bp):
CTTAGAATGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CGAGCAGAGAGGCGGATGTGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACAATCCTG
CTGCACAACCCTCAGTCCGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAGCCAACCGA
CGAAAAGAGTGGGTGGGCGGACGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGA
AGGAGTTTTGGCTCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCAAAGCATACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACCTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCACACACCCCCCGCCCCCCAATCACCGGAACACCAATGCCACCGGTCAGGTTCCCCGGCGATG
GTGTCCCGACGAAGAAAAATACACCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
TCGATCTGGTCTGATCATAGACTGGGAATGAACTCCATATG
Found at i:5313270 original size:26 final size:26
Alignment explanation
Indices: 5313240--5313292 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5313230 GTTGACATAG
*
5313240 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5313266 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5313292 G
1 G
5313293 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5314195 original size:26 final size:26
Alignment explanation
Indices: 5314145--5314197 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5314135 GTTGACTTAG
* **
5314145 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATAAGGAGTTCATTCCCAATCTAA
5314171 GCATAAGGAGTTCATTCCCAATCTAA
1 GCATAAGGAGTTCATTCCCAATCTAA
5314197 G
1 G
5314198 ATTAGAAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAATCTAA
Found at i:5314350 original size:905 final size:901
Alignment explanation
Indices: 5311465--5315375 Score: 4853
Period size: 903 Copynumber: 4.3 Consensus size: 901
5311455 CTTAGGCATC
** * * *
5311465 GGAGTTCATTTCCCAGTCTAAGATCA-AATTATA-CGAGGGTTGCAGCAGCATATTG-TGGGCTC
1 GGAGTTCA-TTCCCAGTCTAAGATCAGAACCAGACCGAGGGTTGCGGCAGCACA-TGCTGGGCTC
* * **
5311527 AGGCATGTGC-GGTGCCACATTTTTCTTCAGCCGGGGCACCATCGC-GGAGGCATCGCCTGGAGC
64 GGGCATGTGCTGGTGCCACATTTTTCTTCA-TCGGGGCACCATCGCTGGA-GCATCATC-GGAG-
* * * * * * *
5311590 AACATGATC-GCAGCATT-GGGTTCCGACCGATC---GGG-C-GGGGAGT-TACACACCAGGGAT
125 AACCTAACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGCCGGGGGGGTGTGCACA-CA-TGAT
* * *
5311647 GTGCGATGGGTGGCTGGTCACTTGTCCCTTATATTGGCCCCCTATCCCGCAATCAAACCTGGAGA
187 GTGCGATGGGT-GCTGGT-ACTTGGCCCTTATATTGGCCCCCTATCCCTC-ATCAAACCTCGAGA
*
5311712 ACTCAC-CACCCCTTAAAGAGCATTTTGAGA-TTTACAGGTTTGCTGCCGGTAGCCATTAAAGTG
249 ACTCACAC-CCCCTTAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCC-ATAGCCATTAAAGTG
* * * *
5311775 TCTAAAATGGGGACA-CTTTCTCAAATGGTCACAAAATCTTGTTACACTTCGAGTTTTTTAGCTG
311 TCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTG-AACACTTAGA-TTTTTTAGCTG
* *
5311839 AATTTTTTTGTGCAAGCCAACAAAAAATACAAAGGATCATGT-CTACAAGTTT-GGAGCCAAAAC
374 AATTTTTTTGTGCATGCCAAC-AAAAATAC-AAGGATCACGTAC--CAAGTTTGGGA-CCAAAAC
* * * *
5311902 TCCTTTTGAAAAAATTTAAAAAATCCCGAACCGC-AAAGGATTTCGAAAATCATAAAAAATAGAA
434 TCCTTTCGAAAAATTTTAAAAAATCCCGAACCACAAAAGG-TTTCGAAAATCATGAAAAATAGAA
* *
5311966 AACGAGTCGTCTTGCCTTGCAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
498 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
5312031 CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
563 CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * *
5312096 TCCACGGCTTGCGCATCCCGTCTTTCAGGCCGACGTAGTGCCCGCCCGCCCGCCCACCCGCTCGT
628 TCCACGGCTTGCGCATCCCGTCTTTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGT
* * * * ** *
5312161 TCCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGAACTGAGGGCTA
693 TCCGTCGGTTAGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTA
* ** * * * * *
5312226 CGACAGCAGGATCAACAGCACGTAGAGAGGGACCCGGTC-GATCCTCAGCTTGTGCATCCCACCC
758 CGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCAGACAGATCCCCGGCTTGTGCATCCCACCC
* * * * * * *
5312290 CTCTGGCCGGGTCAGCGCCTGA-ACGCCCGTTTCGTTGGTTTACTTAGGCATACGGAGTTCATTC
823 CTCTGGCCAGTTGAGCGCC-CACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
5312354 CCAGTCTAAGCATACA
887 CCAGTCTAAGCATA-A
* * * *
5312370 -AAGTTCATTCGCAGTCTAAGATCAG-ACCAGAACGAGGGTTGCGGCAGCACATGCTGGGCAT-A
1 GGAGTTCATTCCCAGTCTAAGATCAGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC-TCG
* * * * *
5312432 GGCATGTGCTGGTGTCACATTCTTCTCCATCGGGGCACCATCGCCGGAGCATCACCGGAGAACCT
65 GGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCTGGAGCATCATCGGAGAACCT
* * *
5312497 AACCGGCGACATTGGGGTTCTGACGAT-AGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATG
130 AACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATG
*
5312561 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTC
195 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
5312626 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
260 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA-TAGCCATTAAAGTGTCTGAAATGGGGA
* * * * *
5312691 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTTATGAA
324 CACCTTTTTCAAATGGTCACAAAATCTTGAACACTTAGATTTTTTAGCTGAA-TTTTTTTGTGCA
* *
5312756 TGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGACAAAAACTCCTTCCGAAAAAATTT
388 TGCCAACAAAAATACAAGGATCACGT--ACCAAGTTTGGGACCAAAACTCCTTTCG-AAAAATTT
* * * *
5312821 TAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCA
450 TAAAAAATCCCGAACCACAAAAGGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
5312886 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
515 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** * * * * * *
5312951 CATGCCGAAATATGATGATGTGCCTAAACCGACCTACCACCCTATCGATCCATGACGTGCGCATC
580 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * ** *
5313016 CCTTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTTGTCGGTTGGCTTAG
645 CCGTCTTTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTCCGTCGGTTAGCTTAG
** * * * * * * *
5313081 GCATATGGAGTTCATTCCCAATCTAAGTTTAGACTGGACCATGGGTTAGGGCAGCAGGATCGGCA
710 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTACGGCAGCAGGATCGGCA
* * * * * *
5313146 GCACGCAGAGGGGGACCC-GACCGATCCCCGGCTTGGGCATCCCGCCCCTCTGGTCGGTTGAGCG
775 GCACGTAGAGGGGGACCCAGACAGATCCCCGGCTTGTGCATCCCACCCCTCTGGCCAGTTGAGCG
* * * * *
5313210 CCCGCACGCTCGTTTCATGGGTTGACATAGGCATATGGAGTTCATTCCCAGTCTAAGCATAC
840 CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAA
** * *
5313272 GGAGTTCATTCCCAGTCTAAGATCA-AACTGGATCAAGGGTTGCGGCAGCACATGCTGGGCTCGG
1 GGAGTTCATTCCCAGTCTAAGATCAGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* * * * * *
5313336 GCATGTGCTGGTGCCGCATTTTTCTTCA-CCGCGCACCATCG-TCAGAGCATCGTCGGAGAACTT
66 GCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCT-GGAGCATCATCGGAGAACCT
* * * * ** * *
5313399 GACCTGTGGCATTGAGGTTCC-AGCGATCGGAGGTACCGGGGGGGTGTGCACACAAGATGTTCGA
130 AACCGGCGGCATTGGGGTTCCGA-CGATCGG-GGGGCCGGGGGGGTGTGCACACATGATGTGCGA
* * *
5313463 TGGCTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
193 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
5313528 CCCTTAAAGAGCTTTTTGAGATTTTACAGGTTTGCTGCCATAGCCATTAAAGTGTCTGAAATGGG
258 CCCTTAAAGAGC-ATTTGAGATTTTACAGGTTTGCTGCCATAGCCATTAAAGTGTCTGAAATGGG
5313593 GACACCTTTTTCAAATGGTCACAAAATCTTGAACACTTAGATTTTTTAGCTGAATTTTTTTGTGC
322 GACACCTTTTTCAAATGGTCACAAAATCTTGAACACTTAGATTTTTTAGCTGAATTTTTTTGTGC
* * * * * *
5313658 GTGTCAACAAAAATACAAGGATCACATATCAAGTTTGGGGCCAAAACT-ATTTCCGAAAGAATTT
387 ATGCCAACAAAAATACAAGGATCACGTACCAAGTTTGGGACCAAAACTCCTTT-CGAAA-AATTT
* * * *
5313722 TAAAAAATCCTGAACCACAAAAGGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCA
450 TAAAAAATCCCGAACCACAAAAGGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
5313787 TGAAACTTCACGTGAAGGCTGAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGG
515 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
5313852 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGCGCATC
580 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* ** * *
5313917 CCGTCTCTT-TGGTCGACAAAGTGCCCGTCCGCCCGCCCGCCCTTTCGCTCGTTTCGTCGGTTAG
645 CCGTCT-TTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG-CC--T-GCTCGTTCCGTCGGTTAG
* * * *
5313981 CTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTAACGGCAGCAAGAT
705 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTACGGCAGCAGGAT
* * * * **
5314046 CGGCAGCATGTAGAGGGGGACCCAG-CAGATCCTCGGCTTATGCATCCCGCCCCTCTGGTTAGTT
770 CGGCAGCACGTAGAGGGGGACCCAGACAGATCCCCGGCTTGTGCATCCCACCCCTCTGGCCAGTT
* * * *
5314110 GAGCACCCACTCGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCTGTCTAAGCAT
835 GAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
5314175 AA
900 AA
* * * * * * *
5314177 GGAGTTCATTCCCAATCTAAGATTAGAA-AAGACCGAGGCTTGCGACAGCACATACTGGGCTTGG
1 GGAGTTCATTCCCAGTCTAAGATCAGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* * *
5314241 GCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCGCTGGAGCATCATCGGAGAACTTG
66 GCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCTGGAGCATCATCGGAGAACCTA
* * * * *
5314306 ACCGGCGGTATTGGGGTTCCGATGATCGGGGGGCCGGCGGGGTGTCCGCACATGATGTGCGATGG
131 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGG
* **
5314371 GTGCTGGTAC-TGGTCCCTTATATTGGCCCCATATCCCTCATCAAACCTTAAGAACTCACACCCC
196 GTGCTGGTACTTGG-CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
5314435 CTTAAAGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATCAAAGTGTCTGAAATGGGGA
260 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA-TAGCCATTAAAGTGTCTGAAATGGGGA
* * *
5314500 CACTTTTTTCAAATGGTGACAAAATCTTGAACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCAT
324 CACCTTTTTCAAATGGTCACAAAATCTTGAACACTTAGATTTTTTAGCTGAATTTTTTTGTGCAT
* *
5314565 GCCAA-AAGAAATACAAGGGTCACGTCTACCAAGTTTGGCACCAAAACTCCTTTCGAAACAATTT
389 GCCAACAA-AAATACAAGGATCACG--TACCAAGTTTGGGACCAAAACTCCTTTCGAAA-AATTT
* * *
5314629 TAAAAAATCCCAAACCGCAAAAGGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCA
450 TAAAAAATCCCGAACCACAAAAGGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * **
5314694 CGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGAGATAAAAATGGCATTGG
515 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** * * * *
5314759 CATGCAGAAATATGAAGATGTCCCCAAACCCACCTACCACCCTATCGATCCACGGCTTACGCACC
580 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
5314824 CCGTCTTTCTGGTCGACGTAGT----GCCCGCTCGCCCGCCTGCTCGTTCCATCGGTTAGCTTAG
645 CCGTCTTTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTCCGTCGGTTAGCTTAG
* *
5314885 GCATATAGAGTTCATTCCCAGTCTAAGATC-GAACCGAACCAAGGGTT------GC-GG--CAGC
710 GCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCGAACCAAGGGTTACGGCAGCAGGATCGGC
* * *
5314940 A-CAC--AGAGGGGGA-CCAGCCA-ATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTT-AG
774 AGCACGTAGAGGGGGACCCAGACAGATCCCCGGCTTGTGCATCCCACCCCTCTGGCC-AGTTGAG
* *
5314999 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAT
838 CGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAA
* * * *
5315063 GGAGTTCATTCCCAGTCTTAGATC-GAACCAGACCGAGGGTTGCGGTAGCACATGCTAGGCTCGT
1 GGAGTTCATTCCCAGTCTAAGATCAGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
* * * * *
5315127 GCTTGTGCTCGTGCCACATTTTTCTTCGTCGGGGCACCATCTCCT-GAGCATCGTCGGAGAACCT
66 GCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATC-GCTGGAGCATCATCGGAGAACCT
* * * * *
5315191 AACCGACGGTATTGGGGTTTCGGCGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATG
130 AACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGAT-
5315255 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
194 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
5315320 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCT
259 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC-ATAGCCATTAAAGTGTCT
5315376 ACCAGGTTAG
Statistics
Matches: 2626, Mismatches: 318, Indels: 143
0.85 0.10 0.05
Matches are distributed among these distances:
885 28 0.01
886 334 0.13
887 20 0.01
889 2 0.00
890 4 0.00
892 1 0.00
893 2 0.00
898 1 0.00
899 62 0.02
900 6 0.00
901 244 0.09
902 107 0.04
903 653 0.25
904 335 0.13
905 516 0.20
906 72 0.03
907 231 0.09
908 8 0.00
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.25
Consensus pattern (901 bp):
GGAGTTCATTCCCAGTCTAAGATCAGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
GCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCTGGAGCATCATCGGAGAACCTA
ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATAGCCATTAAAGTGTCTGAAATGGGGACA
CCTTTTTCAAATGGTCACAAAATCTTGAACACTTAGATTTTTTAGCTGAATTTTTTTGTGCATGC
CAACAAAAATACAAGGATCACGTACCAAGTTTGGGACCAAAACTCCTTTCGAAAAATTTTAAAAA
ATCCCGAACCACAAAAGGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
TTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTCCGTCGGTTAGCTTAGGCATAC
AGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTACGGCAGCAGGATCGGCAGCACGT
AGAGGGGGACCCAGACAGATCCCCGGCTTGTGCATCCCACCCCTCTGGCCAGTTGAGCGCCCACA
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAA
Found at i:5315067 original size:26 final size:26
Alignment explanation
Indices: 5315031--5315080 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
5315021 GTTGACTTAG
5315031 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5315057 GCATATGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
5315081 TAGATCGAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5317190 original size:26 final size:26
Alignment explanation
Indices: 5317140--5317192 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
5317130 TTGACTTCAG
*
5317140 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAATCTAA
*
5317166 GCATATGGAGTTCATTCGC-AATCTAA
1 GCATACGGAGTTCATTC-CTAATCTAA
5317192 G
1 G
5317193 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAATCTAA
Found at i:5318965 original size:26 final size:26
Alignment explanation
Indices: 5318929--5318981 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5318919 GTTAACTTAG
5318929 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5318955 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5318981 G
1 G
5318982 ATCGGACCGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5320776 original size:26 final size:26
Alignment explanation
Indices: 5320740--5320792 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5320730 GTTGACTTAG
5320740 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
5320766 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5320792 G
1 G
5320793 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5321207 original size:11 final size:11
Alignment explanation
Indices: 5321191--5321215 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
5321181 TTGGAGCTAA
5321191 AAATAATTTTG
1 AAATAATTTTG
5321202 AAATAATTTTG
1 AAATAATTTTG
5321213 AAA
1 AAA
5321216 AATCCCGAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (11 bp):
AAATAATTTTG
Found at i:5322124 original size:905 final size:901
Alignment explanation
Indices: 5316432--5323814 Score: 9163
Period size: 904 Copynumber: 8.2 Consensus size: 901
5316422 CTGACCGACT
5316432 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
1 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
5316497 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
66 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
5316562 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
131 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * *
5316627 AATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTTGGGCCAAAACTCC
196 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * *
5316692 TTCCGAAAAAATTTTAAAAAATCCCAAACCG-TAAAAGTTTCAAAAATGGTGAAAAATAGAAAA-
261 TTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
*
5316755 GAGTCGTCTTGGCATGAAACTTCACGTGAAGGCTT-AGGGACC-TTGTATGAATTTACAAAGCCA
326 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC-AAGCCA
* * *
5316818 TAAAAAAATGGCACTGGCATG--CAAATATAAAAGATGTGCCTAAACCCACCTACCACCCTATCG
390 T--AAAAATGGCATTGGCATGTAGAAATAT-GAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * *
5316881 ATCCAGCGGCTTGCGCATCCCGTTTCTCTTGCCTGGCCGTAGTG-GCCCGCCCGCCTGTCGGCCC
452 ATCCA-CGGCTTGCGCATCCCGTCTCTCTGGCC--GACGTAGTGCCCCCGCCCGCC---C-GCCC
** * * *
5316945 GGCTAC-TCCATTCACCGGTTGGATTTAGGCCATATGGAGTTCATTCCCAGTCTAAGA-C-AAGA
510 -GCT-CGT---TTCGTCGGTTGG-CTTAGG-CATACGGAGTTCATTCCCAGTCTAAGATCGAA-C
* * * * * * ***
5317007 CTGAACTGAGGGTTTACGGCTAGCATGATCGGCAGCACGCAGAGGGGGGACCCGATTGATCCCGC
567 CAG-ACCGAGGG-TTGCGGC-AGTAGGATTGGCAGCACGCAGA-GGGGGACCCGGCCGATCCC-C
* * * *
5317072 AGCTTGCGTATCCCACCCCTCTGGCCGGGCTGGAGCGCCCACCACGCTCG-TTCATGGGTTGACT
627 GGCTTGCGCATCCCACCCCTCTGGCC-GGCT-GAGCGCCC-GCACGCTCGTTTCGTGGGTTGACT
* * * * *
5317136 TCAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCGCAATCTAAGATCAGACC
689 T-AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * *
5317201 AGACCGAAGGTTGCAGCAGCACATGATGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACC
753 GGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACC
** ** * * *** * *
5317266 ACGGCACCATCACCGTAGCATCACCGGAGAACCTGACCGGCGGCATTAACGTTTCGAAGATC-GG
818 GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG
*
5317330 GGGGCCGGGGGGGTGTGAGC
883 GGGGCC-GGGGGGTGTGCGC
* *
5317350 ACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTC
1 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
5317415 GAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
66 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
5317480 TGTCTGAAATGGGGACACTTTTTTCAAATGGTTAAAAAATCTTGTACACTTTGAGTTTTTAGCTG
131 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * *
5317545 AA-TTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCC
196 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * * * *
5317609 TTCCGAAGAAATTTTAAAAAATCTCGAATCACAAAAAGTTTCAAAAATGGTGAAAAATAGAAAAC
261 TTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
** *
5317674 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGTTACAATTGTATGAATTTACAAGCCAT
326 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
** * *
5317739 AAAAATGGCATTGGCATGTAGAAATATGAAGACATGCCTAAACCCACCTACCACCCTATCGGTCT
391 AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
*
5317804 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT------GCCCGCCTGCCCGCTCGTTTCGT
456 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCGCCCGCCCGCCCGCTCGTTTCGT
* * * **
5317863 CGGTTGGGTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG-----GATCGGGGGTTGCCACA
521 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCA
* * ** * * * *
5317923 GTAGGATCGGCAGCATGCAGAGGGGGACATGGCTGATCCTCGGCTTACGCATCCCGCCCCTCTGG
586 GTAGGATTGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGG
* * * * **
5317988 CCGGCTGAGCGCCGGCACGCTCGTTTCATTGGTTGACTTAGGCATACGAAGTTCATT--TTGTCT
651 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* ** * * * * * **
5318051 AATG-ATACGAAGTAAATTCCCAATCTAAGATTGGATCAGACCGAGGTTTGTGGCAGCACATGCT
716 AA-GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCT
* * * * * *
5318115 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCTTCGTCGGAGCATTGTCAG
780 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGG
* * *
5318180 AGAATCTGACCGGCGGCGTTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTG-GC
845 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGC
* *
5318236 ACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT
1 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
**
5318301 GAGAACTCATGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
66 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * * * *
5318366 TGTCTGAAATAGGGACACTTTTTTGAAATAGTCAAAAAATCTTGCACACTTCGAGTTTTTAGCTG
131 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* ** * *
5318431 AATTCTTTTGTGCATGTGAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCC
196 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* ** * ** *
5318496 TTCCGAAAAAATTTTAAAAAATGTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAAAAGAAAAC
261 TTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* * *
5318561 GAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCCTAAGGGACGATTGTATGAATTTACAAGCCAT
326 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*
5318626 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
391 AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * * *
5318691 ACAGCTTGCGAATCACGTCTCTCTGACCGGCGTAGTGCCACCCCTCCCGCCCGCCCGCTTGTTTC
456 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-C-CCCCGCCCGCCCGCCCGCTCGTTTC
* * * * * * *
5318756 GTTGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACGGAGGGTAGTGG
519 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGG
* * * * * *
5318821 CAGCAGGATCGGCAGCACGTAGAGGGGGAGCCGGCTGATCCCCAGCTTGCGCATCCCACCCCTCT
584 CAGTAGGATTGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCT
*
5318886 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGT
649 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * *
5318951 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGCACCAATGGTTGCAGTAGCACAAGC
714 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGC
* * * * *
5319016 TGGGCTCGGGTATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGCCGGTGCATCACCG
779 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCG
* * * *
5319081 GGGAACCTAACTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCAC
844 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGC
* *
5319140 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTA
1 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
** * *
5319205 GAGAACTCACAATCCCTCAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
66 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
5319270 TGTGTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACCCTTCGAGCTTTTAGCTG
131 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * * * * *
5319335 AATTTTTTTTTGCATGCCAACAAAAATACAATGATCACATCTACCAAGCTTCGGGCCAAAAAT-C
196 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * ** *
5319399 TTTTCGAAAAAATTTTTAAAAATCCCAAATGGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
261 TTCT-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
5319464 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
325 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
5319529 TAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
390 TAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * *
5319594 CACGGCTTGCGCATCCCATCTCTCTAGTTGACGTA-GTACCCGTCCGCCCTCCCGCCCTCCCGCC
455 CACGGCTTGCGCATCCCGTCTCTCT-G--GCCG-ACGTA---GT--G-CC-CCCGCCCGCCCGCC
* * * *
5319658 CACTCGTTTCGTCGGTTGGCTTAGGCATACGGACTTCATTCCTAGTCTAAGATC-AGACCAGATC
509 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACC
* * * * * * * * *
5319722 GAGAGTTGTGGCAGTA-AAATGACAGCACACAGAGGGGGACCCGGTCGATGCCCAGCTTGCGCAT
573 GAGGGTTGCGGCAGTAGGATTGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT
* * * * * *
5319786 CCCACCCTTCTGGCCGGTTGAGCACCCGCACGTTTGTTTTGTGGGTTGACTTAGGCATACGGAGT
638 CCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
** *
5319851 TCATTCCCAGTCTAAGCATATTGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGC-
703 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCA
** * ** * *
5319915 GACAGCACATTTTGGGCTCGGGCGTGTGCTGGTGCCGTTTTTTTCTTCGCTGGGGCACCATCGTC
768 G-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTC
* * *
5319980 GGAGCATCGCCCGAGAACCTGACCGACGGCATTGGGGTTCCGACGACCGGGGGGGCCGGAGGTGG
832 GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GG-GG
*
5320045 TGTGCAC
895 TGTGCGC
* * *
5320052 ACATGATGTGCGACGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT
1 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
5320117 GAGAACTCACACCCCCTTAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
66 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* ** * *
5320182 TGTCTGAAATGGGGACACCTTTTTT-TAATGGTCACAAAATCTTGTACACTTTAAATTTTTTGCT
131 TGTCTGAAATGGGGACA-CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * *
5320246 GAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATGACGTCTACCAGGTTGGGGGCCAAAACTC
195 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * *
5320311 CTT-TCAAAAAAATTTTAAAAAATCCAGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
260 CTTCT-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* * * * * * *
5320375 ACGAGTTGTCCTACCACGAAACTTCATGTAAAGGCTTAAGGGACCATGGTATGAATTTACAAGCC
324 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
** *
5320440 ATAAAAATGGCATTGGCACATAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
389 ATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
** * * * *
5320505 CCACGGCTTGCTTATCCCGTCTCTCTGGTCGACGTAGTGCCGCC-CCTGCCCGCCCG-TTGTTTC
454 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCGCCCGCCCGCCCGCTCGTTTC
* * * * * *
5320568 ATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC-GACTGAGGGTTGCGA
519 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGG
* * * * * **
5320632 TAGTAGGATAGGCAGCATGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCT
584 CAGTAGGATTGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCT
* * *
5320697 AGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAAT
649 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* *
5320762 CTAAGCATACGGAGTTCGTTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGC-GCTAGCACATG
714 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGC-AGCACATG
** * *
5320826 CTGGGCTCAAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGTACCA---TC---G--T---C
778 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCC
* *
5320880 GGAGAACCTGACCGGCGGCATTGAGGTTCCGAC-ATC-GGGGGGCCGGGGGGTGTGTGC
843 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGC
* * *
5320937 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCGTATATTGGCCCCCTATCCCTTATCAAACCTT
1 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * * * *
5321002 AAGAACTCACACCCCCTTAAAGAGAATTTGGGATTTTACAAGTTTGCTACCAGTAGCCATTAAAG
66 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
5321067 TGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTG
131 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * * **
5321132 AATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCTAAAAATAA
196 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * * *
5321197 TTTTGAAATAATTTTGAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
261 TTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* *
5321262 GAGTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCAT
326 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*
5321327 AAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
391 AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* *
5321392 ACGGCTTGCGCATCCCGTCTCTTTGGCCGACGTAGTGCCCACCCGCCCACCCGCCCTCATGCTCG
456 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CC-CCCGCCCGCCCG-CC-C--GCTCG
* *
5321457 TTTCGTTGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTT
515 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTT
* * ** * * *
5321522 GGGGCAGTACGATTAACAGCACGTATAGGGGGTCCCGGCCGATCCCCGGCTTGCGCATCCCACCC
580 GCGGCAGTAGGATTGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCC
* * * * *
5321587 CTCTGGCTGGCTGAGCGCCCGTACGCTCGTTTCATAGGTTGACTTAGGCATACAGAGTTCATTCC
645 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * *
5321652 AAGTCTAAGCATATGGTA-TTCATTCCCAGTC-AAGATCGGACCGGACTGAGGGTTGCACCAGCA
710 CAGTCTAAGCATACGG-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCA
* * * * **
5321715 GATGCTGGGCTCGGGCTTGTGATGGTGCCCCATTTTTCTTCACTAGGGCACCATCGTCGGAGCAT
774 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCAT
* * * * *
5321780 CGTCGGAGAACCTGACTGGCGACATTGGGGTTCC-AGCGATCGGGTGGGCCGGGGGGTGTGCGT
839 CGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGC
*
5321843 ACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTC
1 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
5321907 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAG
66 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
5321972 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
131 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * * * *
5322037 AATTTTTTTGTGCACGTCAAAAAAAATACAGGGATCACGTCTACCAAATTTGGGGGCAAAACCCC
196 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* *
5322102 TT-TGAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAACCGTGAAAAATAGAAAA
261 TTCTG-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
* * *
5322166 CGAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAACCCA
325 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * *
5322231 TAAAAATGGCATTGGCATGTAGAAATATGAAGATATGCCTAAACCCACCTACCACACAATCGATC
390 TAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * * * *
5322296 CACGGCTTGCGCATCCCGCCTCTCTGGCTGGCATAGTGCCCGCTCGTCCGCCTGCCAGCTCATTT
455 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-C-CGCCCGCCCGCCCGCTCGTTT
* * * * * * ** * *
5322361 CATCGGTCGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCAAACTAAGGGATGCA
518 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCG
** * * ** * * * * * **
5322426 ATAGCAGGACTGATAGCACACAGAGGAGGACCCGACCGATCCTCGGCTTGCGCATTCTGCCCCTC
583 GCAGTAGGATTGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTC
* ** * * *
5322491 TAGTTGACTGAGCGCCCGCATGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
648 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * *
5322556 TCTAAG-AGTACGGAGTTCATTTCCAGTCTAAGATCAGATCGAACCGAGGGTTGC-GACAGCACA
713 TCTAAGCA-TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAG-CAGCACA
* * * * * * *
5322619 TGCTGGGCCCAGGCATGTGTTGCTGTCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCACCG
776 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCG
* * ** * *
5322684 CCTGACAACCTGACCTACGGCATTAGGGTTCCGACGATCGGGGGGGCTGGGGGGGTGTGCGC
841 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGGTGTGCGC
* * *
5322746 ACATAATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTC
1 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
5322811 GAGAACTCACACGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
66 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
5322876 TGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTG
131 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * *
5322940 AATTTTTTTGTGCATGCCAAAAAAAAATAGAAGGATCATGTCTACCAAGTTTGGGCCCAAAACTC
196 AATTTTTTTGTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * * * *
5323005 CTTCTGAAAAAATTTAAAAAAAATCTCGAACTGCAAAAAGTTTAAAAAATCATGAAAAATAGAGA
260 CTTCTGAAAAAATTT-TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
5323070 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
324 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*** * *
5323135 ATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGAT
389 ATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * * *
5323200 CCACGGCGTGCGCATCCCGTCTCTCTGGCCGGCATAGT------GCCCGTCCGCCTGCTCATTTC
454 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCGCCCGCCCGCCCGCTCGTTTC
* * * * * *
5323259 GTCAGTTGGCTTAGGCATACAGAGTTCATTCTCAGTCTAAGATCGGACCGGACCGA-GGTATGCA
519 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGT-TGCG
* * * * * * * * * * *
5323323 GTAGGAGGATTGGCAACACACAGAAGGGGACCCAGTCGATCCCTGGCTTACGCATCCCGCCCTTC
583 GCAGTAGGATTGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTC
* * * * *
5323388 TGGCCGGCTGAGCACCCGCACGCTCATTTCGTTGGATGACTTAGGCATACGGAGTTCATTCTCAG
648 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
** * * ** **
5323453 TCTAAGCATAAAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGACAGTTGTGGCAGCACATG
713 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATG
* * * * * * ** * ** * **
5323518 CTGGGCTCGAGCATGCGTTAGTGCTGTA-TTTTCTTCGTCGGAGCACCATCACCGAAGCATCATC
778 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCC
* * * *
5323582 GGAGAACCTGACTGGC-GCATTGGGGTTTCGACAATC-GGGGGGTC-GGGGGTGTGCGC
843 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGC
* *
5323638 ACATGATGTGCAATGGGTGCTGGTACTTGGCCCATATATTGGGCCCCCCTATCCCTCATCAAACC
1 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GG-CCCCCTATCCCTCATCAAACC
*
5323703 TCGAGAACTCACCACCCCCTGAAAGAGCATTTTGAGA-TTTACAGGTTTGCTGCCAGTAGCCATT
64 TCGAGAACTCA-CACCCCCTTAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
5323767 AAAGTGTCTGAAAT-GGGACACTTTTTTCAACTGGTCACAAAA-CTTGTA
127 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
5323815 AAATTCGAAT
Statistics
Matches: 5601, Mismatches: 764, Indels: 224
0.85 0.12 0.03
Matches are distributed among these distances:
884 6 0.00
885 441 0.08
886 191 0.03
887 419 0.07
888 17 0.00
889 58 0.01
890 22 0.00
891 4 0.00
892 73 0.01
893 135 0.02
894 214 0.04
895 157 0.03
896 54 0.01
897 239 0.04
898 2 0.00
899 16 0.00
900 368 0.07
901 221 0.04
902 270 0.05
903 139 0.02
904 618 0.11
905 615 0.11
906 64 0.01
907 9 0.00
908 1 0.00
909 6 0.00
910 4 0.00
911 266 0.05
912 510 0.09
913 10 0.00
916 7 0.00
917 82 0.01
918 264 0.05
919 68 0.01
920 17 0.00
921 14 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
TTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCGCCCGCCCGCCCGCTCGTTTCGT
CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCA
GTAGGATTGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGG
CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTG
GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGA
GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGC
Found at i:5322567 original size:26 final size:26
Alignment explanation
Indices: 5322538--5322588 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5322528 GACTTAGGCA
5322538 TACGGAGTTCATTCCCAGTCTAAGAG
1 TACGGAGTTCATTCCCAGTCTAAGAG
*
5322564 TACGGAGTTCATTTCCAGTCTAAGA
1 TACGGAGTTCATTCCCAGTCTAAGA
5322589 TCAGATCGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGAG
Found at i:5326937 original size:26 final size:26
Alignment explanation
Indices: 5326906--5326958 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5326896 GTTGACTTAG
5326906 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
5326932 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
5326958 G
1 G
5326959 ATTCGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:5328849 original size:868 final size:867
Alignment explanation
Indices: 5327764--5331038 Score: 3881
Period size: 868 Copynumber: 3.7 Consensus size: 867
5327754 TTCTTCGCCG
* * *
5327764 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGAAGGGGGTGTGGGCACAT
1 GAGAACCTGAGCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC--AGGGGGGTGTGCGCACAT
* * *
5327829 GATGTGTGATGGGTGCTGGTATTTGCCCCTTATATTGGCCCCATATCCCTCATCAATCCTCAAGA
64 GATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCAAGA
* *
5327894 AATCACACCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCTGCCAGTAGCCATTAAAGTGTC
128 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
5327959 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAAT
193 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AAT
* ** *
5328024 TTTTTGCGCATGCCAACAAAAATACAAGGATCACGTCTATGAAGTTTAGGGCCAAAACTCCTTCC
257 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* *
5328089 GAAAAAATTTTAAAAAATCTCGAACCGTAACAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
322 GAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
*
5328154 CGTCTTGCCATCAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
387 CGTCTTGCCAT-GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
5328219 AATGGCATTGCCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
451 AATGGCATTGCCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* *
5328284 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTCCCCGCTCTTTTCATC
516 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGCGCCCGCCCGCCCGCCT---CGCTCGTTTCATC
* * * * *
5328349 GGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTTAGATCAGACTAGATCGAGGGTTA-C-GG-
578 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAGCAGGA
* * * * *
5328411 T-AGCAGCACGCAGAGGGCGACCTGGCCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCTGGCT
643 TCAGCAGCACGCAGAGGGGGACCCGACCGATCC-CGACTTGCGCATCCCGCCCCTCTGGCTGGCT
* * * *
5328475 AAGCACCTGCACGCTCGTTTCGTAGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCCAAGATC
707 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCCAAGATC
* * * * * * * *
5328540 GGACCGGACCTAGGGTTATAGCAGCACATTCTGGGCTCGTGCATATGCTGGTGCCACATTTTTCT
772 GGACCGGACCGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
** * **
5328605 TCGTCGGGGCACCATCGCCAAAGCTTCGTTG
837 TCGTCGGGGCACCATCGCCGGAGCATCGTCA
* * *
5328636 GAGAACCTGATCGGCGGCATTGGGGTTGCAACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGA
1 GAGAACCTGAGCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGA
* * *
5328699 TGTGTGATGGGTGCTGGCACTTGGCCCTTATATTGGCCTCCTATCTCTCATCAAACCTCGAGAAC
66 TGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATCAAACCTCAAGAAC
*
5328764 TCACACCCCCTTAAAGAGCATTGGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
130 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
5328829 AAATGGGGACACTTTTTTCAACTGGTCACAAAATCTTGTACACATT-AAGTTTTTAGCTGAATTT
195 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTT
*
5328893 CTTTGTGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
259 -TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
*
5328958 AAAAAAAGTTTT-AAAAATC-CTGAACCGTAAAAAATTTCAAAAATCATGAAAAATAGAAAACGA
323 -AAAAAA-TTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* *
5329021 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATCA
385 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
5329086 AAATGGCATT-CGCAAGTAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCA
450 AAATGGCATTGC-CATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * *
5329150 CGACTTGCGCATCCCGTCTCTCT-GCTC-ATCGTA--G--TGCCCGCCCGCC-CACTCGTTTCAT
514 CGGCTTGCGCATCCCGTCTCTCTGGC-CGA-CGTAGCGCCCGCCCGCCCGCCTCGCTCGTTTCAT
* * *
5329208 CGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCTAGGGTTGTGGCA
577 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG-T-T---A
* * * **
5329273 GCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCTAACTTGCGCATCTTGCCCCTCTGG
637 GCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCC-GACTTGCGCATCCCGCCCCTCTGG
* * *
5329338 -TCGGTTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTA
701 CT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAG--
* *
5329402 TAAGCATACAGAGTCCTTTCCCAGCCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCACATGCT
763 T---C---CA-AG----AT--C-G-----GA-C---C-GGACCGAGGGTTGTGGTAGCACATGCT
* *
5329467 GGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCA
804 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCA
* * * * *
5329531 G-GAACATGAGCGACGGCATTGGGGTTTCGACGATCGGAGGGGCC-GGAGGGGTGTGTGCACATG
1 GAGAACCTGAGCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGG-GGGGTGTGCGCACATG
* * * *
5329594 ATGTATGATGGGTGCTGGTACATGGCCCTTCTATTGGCCCCCTATCACTCATCAAACCTCAAGAA
65 ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAA
* * *
5329659 CTCACAACCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTT
129 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
5329724 GAAATGGGGACACTTTTTTCAAATGGTCACAAAACCTTATACACTTCGAGTTTTTAGCTGAATTA
194 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
** * *
5329789 TTT-TG--TG------------C----AT---G----CCAAGTTTGGGGTGAAAAATCCTTCCCA
259 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* ** * *
5329828 AAAAATTTTAAAAAATCT-TAGACCGTAAAAAGTTTTGAAAATTATGAAAAATAAAAAACGAGTC
324 AAAAATTTTAAAAAATCTCGA-ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
5329892 GTCTTGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAA
388 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
5329957 TGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGC
453 TGGCATTGCCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
5330022 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGCGCCCGCCCGCCCG-CTCGCTCGTTTCGTCGGTTG
518 TTGCGCATCCCGTCTCTCTGGCCGACGTAGCGCCCGCCCGCCCGCCTCGCTCGTTTCATCGGTTG
* * * ** * *
5330086 GCTTATGCATACGGAGTTCATTGCTAGTCTAAGATCAGACTGGACTGAGGATTGCGATAGCAGGA
583 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA-G---G-GTTAGCAGGA
* * * * * *
5330151 TCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATTCCGCCCCTCTAGCCGACT
643 TCAGCAGCACGCAGAGGGGGACCCGACCGAT-CCCGACTTGCGCATCCCGCCCCTCTGGCTGGCT
* *
5330216 GAGCGCCCGCACGTTCATTTCGTGGGTTGACTTAGACATACGGAGTTCCTTCCCAGTCTAAGCAT
707 GAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-T-----TA--G-G--------CA---T-A-C--
* * *
5330281 ATGGAGTTCATTCCTAGTCGAAGATCAGACCGGACCGAGGGTTGTGGTAGCACATGCTGGGCTCG
748 A--GAGTTCATTCCCAGTCCAAGATCGGACCGGACCGAGGGTTGTGGTAGCACATGCTGGGCTCG
* * * *
5330346 GGCATGTGCTTGTGCTGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCCTCA
811 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCA
* ** ** *
5330403 GAAAACCTG-GCTGGCGAAATAAGAGTTCCGACGATCGGGGGGGCCAGGGGGTGTGTGTTCGCAC
1 GAGAACCTGAGC-GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGG-GTGTG--CGCAC
*
5330467 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCAA
62 ATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCCCTCATCAAACCTCAA
*
5330532 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGTAGCCATTAAAGTG
126 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
5330597 T-TCGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
191 TCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * * * *
5330661 ATTTTTTTATGCATACCAGCAAAAATAGAAGGATCATGTCTACCTAGTTTGGGGCCAAAACTCCT
255 A-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* *
5330726 TCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
319 TCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
**
5330791 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAATATTGTATGAATTTACAAGCCATA
384 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * *
5330856 AAAATGGCATTGGCATGCA-AAAAATTGAAGATGTGACCTAAACCCACCTACCA-CCTATCAATC
449 AAAATGGCATTGCCATGTAGAAATA-TGAAGATGTG-CCTAAACCCACCTACCACCCTATCGATC
* * *
5330919 CATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGCGCCCG-CCGTCCGCCTGGCTCGTTTCAT
512 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGCGCCCGCCCGCCCGCCTCGCTCGTTTCAT
* *
5330983 C-G-TGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTT
577 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
5331039 GCGGCAGCAC
Statistics
Matches: 2057, Mismatches: 213, Indels: 243
0.82 0.08 0.10
Matches are distributed among these distances:
860 59 0.03
861 1 0.00
862 1 0.00
864 11 0.01
865 1 0.00
866 2 0.00
867 16 0.01
868 583 0.28
869 192 0.09
870 5 0.00
871 10 0.00
872 268 0.13
873 40 0.02
874 8 0.00
875 5 0.00
876 186 0.09
877 10 0.00
878 6 0.00
880 3 0.00
881 1 0.00
882 1 0.00
883 1 0.00
884 1 0.00
885 2 0.00
889 4 0.00
890 3 0.00
891 1 0.00
892 3 0.00
893 2 0.00
894 33 0.02
895 92 0.04
896 194 0.09
897 2 0.00
898 13 0.01
899 2 0.00
900 8 0.00
901 33 0.02
902 11 0.01
903 225 0.11
904 18 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (867 bp):
GAGAACCTGAGCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGA
TGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGCCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGTCTCTCTGGCCGACGTAGCGCCCGCCCGCCCGCCTCGCTCGTTTCATCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAGCAGGATCAGCAGC
ACGCAGAGGGGGACCCGACCGATCCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCCAAGATCGGACCGGAC
CGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
CACCATCGCCGGAGCATCGTCA
Found at i:5329431 original size:26 final size:26
Alignment explanation
Indices: 5329379--5329431 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5329369 GTTGACTTAG
* *
5329379 GCATACAGAGTTCATTCCCAGTATAA
1 GCATACAGAGTCCATTCCCAGCATAA
* *
5329405 GCATACAGAGTCCTTTCCCAGCCTAA
1 GCATACAGAGTCCATTCCCAGCATAA
5329431 G
1 G
5329432 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAGCATAA
Found at i:5331653 original size:718 final size:712
Alignment explanation
Indices: 5330277--5331762 Score: 2061
Period size: 718 Copynumber: 2.1 Consensus size: 712
5330267 CCCAGTCTAA
* * * * *
5330277 GCATATGGAGTTCATTCCTAGTCGAAGATCAGACCGGACCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
5330342 CTCGGGCATGTGCTTGTGCTGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCCTCAGAAA
65 CTCGGGCATGTGCTTGTGCTGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCCTCAGAAA
* * * * *
5330407 ACCTGGCTGGCGAAATAAGAGTTCCGACGATCGGGGGGGCCAGGGGGTGTGTGTTCGCACATGAT
130 ACCTGACCGGCGAAATAAGAGTTCCGACGATCGGGGGCGCCAGGGGGGGTGTGTGCGCACATGAT
*
5330472 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCAAGAACT
195 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* * *
5330537 CACACCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGTAGCCATTAAAGTGTTCGA
260 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTCAA
* *
5330602 AATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
325 AATGGGGACATCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTT
* * * *
5330667 TTATGCATACCAGCAAAAATAGAAGGATCATGTCTACCTAGTTTGGGGCCAAAACTCCTTCCAAA
390 TTATGCATACCAGAAAAAATACAAGGATCATGTCTACCAAGCTTGGGGCCAAAACTCCTTCCAAA
*
5330732 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
455 AAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
5330797 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAATATTGTATGAATTTACAAGCCATAAAAATG
520 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCAATAAAAATG
* *
5330862 GCATTGGCATGCAAAAAATTGAAGATGTGACCTAAACCCACCTACCACCTATCAATCCATGGCTT
585 GCATTGGCA-GCAAAAAATTGAAGATATGACCTAAACCCACCTACCACCTATCAATCCACGGCTT
* *
5330927 GCGCATCCCGTCTCTCTGGCCGACGTAGCGCCCGCC-GTCCGCCTGGCTCGTTTCATC-G-TGAC
649 GCGCATCCCGTCTCCCTGGCCGACGTAGCGCCCGCCAG--C-CC--ACTCGTTTCATCGGTTGAC
*
5330989 TTAG
709 TGAG
5330993 GCATATGGAGTTCATTCCCAGTCTAAGATCGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* *
5331058 TCGGGCATGTG-TTGTTG-TCGCATTTTTCTTTTGTCGGGGCACCATCACCGGAGCATCGC-CGG
66 TCGGGCATGTGCTTG-TGCT-GCATTTTTC-TTCGTCGGGGCACCATCACCGGAGCATC-CTCAG
* ** * * * *
5331120 AGAACCTGACCGGCGGCATTAGGGTTCCGGCGATCGGGGGCGTC-GGGGGGGTGTG-GCGCACAT
127 AAAACCTGACCGGCGAAATAAGAGTTCCGACGATCGGGGGCGCCAGGGGGGGTGTGTGCGCACAT
* * *
5331183 GATGTGTGATGGGGTGCTGGTACTTGGCCCCTTATATTGGCCCCCTATCCTTTCATCAAACCTCG
192 GATGTGCGAT-GGGTGCTGGTACTTGG-CCCTTATATTGGCCCCCTATCC-CTCATCAAACCTCA
* *
5331248 AGAACTGACACCCCCTTAAA-AGCATTTGAGATTTTACAGGTTTGCTATCAGTAGCCA-TAAAGT
254 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGT
5331311 G-TCTAAAATGGGGACA-CTTTTTCAAATGGTCACAAAATCTTGCTACACTTTTCGAGTTTTTTA
319 GTTC-AAAATGGGGACATCTTTTTCAAATGGTCACAAAATCTTG-TACAC--TTCGAG-TTTTT-
* * *
5331374 AG-TGAAATTTTTTGTGCATGCCA-AAAAAATTACAAGGATCGTGTCTACCAAGCTTGGGGCCAA
378 AGCTGAAATTTTTTATGCATACCAGAAAAAA-TACAAGGATCATGTCTACCAAGCTTGGGGCCAA
* * * *
5331437 AACTCCTTCCGAAAAAATTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCTTTAAAAATA
442 AACTCCTTCCAAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
*
5331502 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
507 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACA
* *
5331567 AGGAATAAAAATGGCATTGGCA-CACAGAAATATGAAGATATG-CCTAAACCCACCTACCACCCT
572 AGCAATAAAAATGGCATTGGCAGCA-AAAAAT-TGAAGATATGACCTAAACCCACCTACCA-CCT
* * *
5331630 ATCGATCTACGGCTT-CTGCATCCCGTCTCCCTGGCCGACGTAGTGCCCGCCAGCCCACTCGTTT
634 ATCAATCCACGGCTTGC-GCATCCCGTCTCCCTGGCCGACGTAGCGCCCGCCAGCCCACTCGTTT
* *
5331694 CGTCGGTTGGCTGAG
698 CATCGGTTGACTGAG
* * * * *
5331709 GCATATGGAGTTCATTCCCAGACTAAGATTGGATCAGATCGAGGGTTGCAGCAG
1 GCATATGGAGTTCATTCCCAGTCTAAGA-TCGACCAGACCGAGGGTTGCGGCAG
5331763 TAGGATCGGC
Statistics
Matches: 686, Mismatches: 62, Indels: 43
0.87 0.08 0.05
Matches are distributed among these distances:
714 57 0.08
715 104 0.15
716 183 0.27
717 88 0.13
718 251 0.37
719 3 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (712 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTTGTGCTGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCCTCAGAAAA
CCTGACCGGCGAAATAAGAGTTCCGACGATCGGGGGCGCCAGGGGGGGTGTGTGCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTCAAA
ATGGGGACATCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTT
TATGCATACCAGAAAAAATACAAGGATCATGTCTACCAAGCTTGGGGCCAAAACTCCTTCCAAAA
AAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCAATAAAAATGG
CATTGGCAGCAAAAAATTGAAGATATGACCTAAACCCACCTACCACCTATCAATCCACGGCTTGC
GCATCCCGTCTCCCTGGCCGACGTAGCGCCCGCCAGCCCACTCGTTTCATCGGTTGACTGAG
Found at i:5331898 original size:26 final size:26
Alignment explanation
Indices: 5331868--5331920 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
5331858 GTTGACTTAG
5331868 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
5331894 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5331920 G
1 G
5331921 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5332425 original size:897 final size:889
Alignment explanation
Indices: 5330993--5340934 Score: 9352
Period size: 880 Copynumber: 11.1 Consensus size: 889
5330983 CGTGACTTAG
* *
5330993 GCATATGGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** *
5331057 CTCGGGCATGTGTTGTTGTCGCATTTTTCTTTTGTCGGGGCACCATCACCGGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCGTCGGGGCACCATC-GTGGAGCATCACC-GAG
* * *
5331122 AACCTGACCGGCGGCATTAGGGTTCCGGCGATCGGGGGCGTCGGGGGGGTGTGGCGCACATGATG
128 AACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGG-GCCGGGGGGGTGT-GCGCACATGATG
* *
5331187 TGTGATGGGGTGCTGGTACTTGGCCCCTTATATTGGCCCCCTATCCTTTCATCAAACCTCGAGAA
191 TGCGAT-GGGTGCTGGTACTTGG-CCCTTATATTGGCCCCCTATCC-CTCATCAAACCTCGAGAA
* **
5331252 CTGACACCCCCTTAAA-AGCATTTGAGATTTTACAGGTTTGCTATCAGTAGCCA-TAAAGTGTCT
253 CTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
5331315 AAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGCTACACTTTTCGAGTTTTTTAAG-TG
317 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG-TACAC--TTCGAG-TTTTT-AGCTG
** *
5331378 AAATTTTTTGTGCATGCCAA-AAAAATTACAAGGATCGTGTCTACCAAGCTTGGGGCCAAAACTC
377 -AATTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * *
5331442 CTTCCGAAAAAATTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCTTTAAAAATAGAAAA
440 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
**
5331507 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGAA
505 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
** *
5331572 TAAAAATGGCATTGGCACACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATC
570 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * *
5331637 TACGGCTT-CTGCATCCCGTCTCCCTGGCCGACGTAGTGCCCGCCAGCCCACTCGTTTCGTCGGT
635 CACGGCTTGC-GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * * *
5331701 TGGCTGAGGCATATGGAGTTCATTCCCAGACTAAGATTGGATCAGATCGAGGGTTGCAGCAGTAG
699 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CGAGGGTTGCAGCAGCAG
* *
5331766 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCACATCCCAGCCCTCTAGTCGG
763 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCC-GCCCTCTAGCCGG
** * * *
5331831 CTGAGCGCTGGCACCCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
827 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
5331894 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGCTGCAACAGCACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
5331959 CTCGGGCATGTGCTAGTGCCACATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-GTGGAGCATCACCG-AGA
** * * * * *
5332024 ATATGACCGGCGGCATTAGGGTTTCGACGATCGAGGGGCCGGGGGGGGGTTTGCACACATGATGT
129 ACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGCC--GGGGGGGTGTGCGCACATGATGT
* * * *
5332089 GCGATTGGTGCTGGTACTTGGGCCTTATATTGGCCCCATATCCCTCATCAAACCTCAAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
**
5332154 TGCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
5332219 TGGGGACACTTTTTTCAAATGGTCACAAGATCTTGTACAGTTCGAGTTTTTAGCTAAAGTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
* ** * **
5332284 TTGCACACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCGTTTTGAAAA
385 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
5332349 AATTTTAAAAAATCCCAAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
450 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
5332414 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAGAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * * * *
5332479 ATTGGCATGTGGAAATATGAAGAAGTGCCTAAACCCACATACCACCCTATCGAACCAGGGCTTAC
580 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
5332544 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCGGCTCGTTTCGTCGGTTGGCTTATGTA
645 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * *
5332609 TACAGAGTTCTTTCCTAGTCTAAGATTGGACCAGACCAAGGGTTGCGGCAGCAGGATCGGCAGCA
710 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CGAGGGTTGCAGCAGCAGGATCGGCAGCA
* * * *
5332674 CGCAGAGGGGCACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTTTAGTCGGCTGAGCGCCCG
774 CGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCG-CCCTCTAGCCGGCTGAGCGCCCG
* *
5332739 CACGCTCGTTTCGGGGGTTGACTTAGGCATACGGAGTTCATTCGCAGTCTAA
838 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * * *
5332791 GCATACGGAGTTCATTTGCAGTCTAAGATCAGACCGGACGGAGGGCTACGGTAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** *
5332856 CTTGAGCATGTGCTGGAGCCACATTTTTCTTCACCGGGGCACCA---T----CA-C-CGGAGCAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTGGAGCATCACCGAG-AA
* * *
5332912 -CTGACCAGCGGCATTAGGG-TTCAGGCGATCGGGGGGCCGGGGGGGTGTGCGCAGATGATGTGC
130 CCTGACCGGCGGCATTGGGGTTTC-GGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
*
5332975 -ATAGAGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 GAT-GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
5333038 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCGTTAAAGTGTCTGAAATG
258 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
5333103 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAATGTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGT
* * * *
5333168 GGATGCTAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGACCAAAACTCCTTCCGAAAAAA
387 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * ** *
5333233 TTTTGAAAAATCCCAAACCGTAAAAAGTTTCAAAAATGGTGAAAAATAGAAAACGAGTCATCTTG
452 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
5333298 CCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGGATTTACAAGCCATAAAAATGGCAT
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*** *
5333363 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGC
582 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
5333428 ATCCCGTCTCTCTGGCCGACATAGCGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGACC
647 ATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCG--C-CC-GCCCGCTCGTTTCGTCGGTTGGCT
** * * **
5333493 TAGGCATACGGAGTTCATTCATAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTGGCAGGAAT-
704 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CGAGGGTTGCAGCAGCAGG-ATC
* ** * * *
5333557 GGCAGCACGCAGAGGGGGACCTGGGCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGA
767 GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCG-CCCTCTAGCCGGCTGA
* * * * ** *
5333622 GCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATATGAAGTTCATTTGCAATCTAA
831 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
5333681 ACATATGGAGTTCATTCCCAATCTAAGATTGGACCAGATCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * *
5333746 GTCGGGCATGTGTTGGTGGCACATTTTTCTTCATCGAGGCAACATCGTCG-G-AT-------AAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTGGAGCATCACCGAGAAC
* * ** * * * *
5333802 CTGACCGACGGTATTGGGGTACCGGTGAT-TGGGGGTCGGGGGGGTGTGCGCACATGATGTGGGA
131 CTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
* * * * *
5333866 TGGGTGGTGGTACTCGGCCCTTATATTAGCCCCCTATCCCTCATGAAACCTCAAGAACTCACACC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-C
*
5333931 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
5333996 GCCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTTC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGC
** * *
5334061 ATGCCAACAAAAATACAAGGATCACGTGAACCAAGTTTGGGACCAAAACTCCTTCCAAAAAAATT
389 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* ** *
5334126 TTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCC
454 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
5334191 ATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATGTACAAGCCATAAAAAGGGCATTG
519 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
5334256 GTATGCGGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
584 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
5334321 CCCGTCTTTCTGGCCGGCTTAGTGCCCGCACGCCCGCCCGCCCACTTGTTTCGTCGGTTGGCTTC
649 CCCGTCTCTCTGGCCGGCGTAGTG--C-C-CGCCCGCCCG----CTCGTTTCGTCGGTTGG---C
* * **
5334386 TTAGGCATACGAAGTTTATTCCCAGTCTAAGATTAGACC-GAACTGAGGGTTGC-GACAGCAGGA
703 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-AC-GAGGGTTGCAG-CAGCAGGA
* *
5334449 TCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCACTCTAGCCGACT
765 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCC-CTCTAGCCGGCT
* * * *
5334514 GAGCGCCCACACGCTCATTTCGTGGGTTCACTTAGGCATACAGAGTTCATTCCCAG--T--
829 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
5334571 -C-TA---AG---------A-TC--AGATC--A---GACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * **
5334614 CGCAGGCATATGCTGGTGCCGTATTTTTATTCACCGGGGCACCATCGTCGGAGCATCACCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT-GGAGCATCACC-GAGA
* * ** * * *
5334679 ACCTGACCGACGGTATTGGGG-TTCTAACGACCGGGGGGTCGGGGGGGTGTGCGCAAATGATGTG
129 ACCTGACCGGCGGCATTGGGGTTTC-GGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
5334743 CGAAGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
5334808 AGCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
258 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
5334873 GGGGACACTTTTTTGAAATGGTCACAAAATCTTATACACATCGAGTTTTTAGCTAAATTGTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTG
* * *
5334938 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAA
386 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * *
5335003 ATTTTAAGAAATCCCGAACCGCAAAAAATTTCGAAAATCATGAAAAATAGAAAACGAGTCATTTT
451 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
5335068 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
5335133 CTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
581 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
5335198 CATCCCATCTCTATGGCTGGTGTAGTGCTCGCCCGCCTGCCCGCCCGCTCTTTTCGTCGGTTGGC
646 CATCCCGTCTCTCTGGCCGGCGTA--G-T-G--C-CC-GCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * ** *
5335263 TTAGGCATACGAAGTTCATTCCCACTCTAAGATCGGACCGGACAGAGGGTTGTGGCAGCAGGATT
703 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC-GAGGGTTGCAGCAGCAGGATC
* * * * *
5335328 GACAACACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTACCCGACTGA
767 GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCG-CCCTCTAGCCGGCTGA
*
5335393 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAA
831 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
**** * * ** * *
5335452 G-ATCCGACCGGACCGAGGGTTGCGACAG-C-AAGAT-TGATAGCACGCAGAGGG-TGCCCGACA
1 GCAT---A-CGGA--GTTCATT-C-CCAGTCTAAGATCGGACCGGAC-C-GAGGGTTG--CGGCA
* **** ** * * * ***
5335512 GATCCCCGACTCGCACATCTCGCCCCTCTGGCCGACTGAGCAGCCGCA-CGCTCGTTCCGT-GGG
54 G---CAC-A-T-GCTGGGCTCG-GGC-AT-G-TG-CTG-G-TGCCGCATTTTTC-TT-CGTCGGG
* * * * * ***
5335575 TTGACTTAGGCAT-ATGGAGTTCATTC-CC-AGTCTAAGCAT-A-CGGAGTTCATTCCCAG--TC
104 --G-C--A-CCATCGTGGAG--CA-TCACCGAG---AA-CCTGACCGGCG-GCATT-GGGGTTTC
*** * * * * * * * * * *
5335633 CAAGATTGGATCGGACC-GAGGGTTGCGACAGCACATGCTGGGC-TTCGGAATGTGCTGGT--GT
154 GGCGATCGG--GGGGCCGGGGGGGTGTG-C-GCACATGATGTGCGAT-GG---GTGCTGGTACTT
* ** * * * * * * * **** ** **** ***
5335694 CGCATTTTTCTTCGTCGGGGCACC-AT-CGTCA-GAGAACCT-AACTGGTGGCATTGGTGTTCCG
211 GGCCCTTAT-AT--T--GGCCCCCTATCCCTCATCA-AACCTCGAGAACTCACACCCCT-TAAAG
** * ** ***** * * * **
5335755 A-CGATCGGGGGGGCTGGGGGGGTGTGC-GCACATGATGTGCGATGT-GTGCTGGTACTTGGCCA
269 AGC-AT--TTGAGATTTTACAGGTTTGCTGC-CA-G-T-AGCCAT-TAAAG-T-GT-C-T-G--A
** ** * ** **** ** * *
5335817 TTATATTAGCCCCCTATCCCTAATCAAACCTCGGAAACTCACACCCCCTTAAAGAGCATTTGAGA
319 --A-ATGGGGACACT-T---TTTTCAAA--T-GG----TCACAAAATCTTGTACA-C-TTCGAG-
** * ** * * * * **
5335882 TTTTATAG--G--TTTGCTG-CCAGTAGCC-ATTAAAGTGTCTGAAATGGGGA-CACTTTTTTCA
367 TTTT-TAGCTGAATTTTTTGTGCA-T-GCCAACAAAAAT-AC---AA---GGATCACGTCTACCA
* * * **
5335940 A--AT-GGTCATAAAATCTTGTACACTT-CGAGTTTTTAGCTGAATTTTTTGTGCATGCCTAAAA
422 AGTTTGGGGC-CAAAA-C---T-C-CTTCCGA------A----AA---AAT-T---T---T-AAA
** * **
5336001 AAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAATTTAAAAAAGT
459 AAAT-C-CCGAAC-CG--TAAAAAGTTT-----C--AA---------------------------
5336066 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
485 -----AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
*
5336131 GACCACTG--T--A--T----G--------ATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
545 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* * * * *
5336178 AAACCCACCTACCGCCCTATCGATTCACGGCTTGTGCATCCCGTCTCTTTGGCCGAC-TAGTGCC
610 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* ** *
5336242 CGCCCGCCCGCTCGTTTTGTCGGTTGGCTTTCGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
675 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* *** * ** * * * * *
5336307 CCAGTTCGAGGGTTATGGTAGCAAGG-TTTGCACCATGCAGAGTGGAACTCGATCGATCCCCGGC
740 CCAG-ACGAGGGTTGCAGCAGC-AGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGC
* * * *
5336371 TTGCGCATCCCACCCCTCTAGCCGGCTAAACGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCA
803 TTGCGCATCCC-GCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* *
5336436 TACGGAGTTCATTCCCAATCTAC
867 TACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
5336459 GCATATGGAGTTCATTCCTAGTCTAAGATCGGACTGGACTGAGGGTTACGACAGCACTTGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * ** * * *
5336524 CTCGAGCAACTACTGGTGATGCATTTTTC-T--T-----CA-C--C--GAAGCATCGTCGGAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTGGAGCATC-ACCGAGAA
** ** *
5336576 CCTGACCGGTAGCATTGGGG-TTC--CGA-C----GATCAGGGGGGTGTGCGCACATGATGTGCG
130 CCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
* ** * *
5336633 ATGGGTGCTTGTACTTTACCCTTATATTGGCCCCCTAACCCTCATCAAACCTGGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-
* *
5336698 CCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* **
5336763 GGACACTTTTTTAAAATAATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTG
* * *
5336828 CATGCCAAAAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG-AAAAAT
388 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* *
5336892 TTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
453 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
5336957 CTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
5337022 GGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCA
583 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* *
5337087 TCTCGTCTCTCTGGCCGGCGTAGTGCCCTCCCGCCCACCCGCCCGCTTGTTTCGTCGGTTGGCTT
648 TCCCGTCTCTCTGGCCGGCGTAGTG----CCCG----CCCGCCCGCTCGTTTCGTCGGTTGGCTT
* ** * * * *
5337152 AAGCATACGGAGTTCATTCGGAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCAG
705 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CGAGGGTTGCAGCAGCAGGATCGG
** * * * **
5337217 CAGCACATAGAGGGGGACCC-AGCCAATCCCCGGCTAGCGCATCTCAC-CCCTCTAGCTAGCTGA
769 CAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATC-C-CGCCCTCTAGCCGGCTGA
* * * *
5337280 GCACCCGCACGCTCATTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAA
831 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
5337339 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
5337404 CTCGAGCATGTGCTGGTGCCTCATTTCTCTTCGTCGAGGCATCATCGTCAGAGCATCGCCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT-GGAGCATCACCG-AGA
* * * *
5337469 ACCTGACTGGTGGCATTGGGGTTCCGGTGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGC
129 ACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * *
5337533 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCTTCAAACCTCAAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
5337598 CCCCCTTAAAGAGCATTTGA-ATTTTACAGCTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
259 -CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
5337662 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGT
* * *
5337727 GCATGCCAACAAAAATACAAGGATCACGTCTACC-AGTTTGGGGCCAAATCTCCTTCTGCAAAAA
387 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
5337791 TTTTAAAAAAATCCTGAACTGTAAAGAGTTT-AAAAATCATGAAAAATAGAAAATGAGTCGTCTT
452 TTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
5337855 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCGATGAAAATGGCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
5337920 TTGGCATGTAGAAATATGAAGATGTGCCTTAACCCACCTAGCACCCTATCGATCCACGGCTTGCG
581 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
5337985 CATCCCG-C-CTCTGTCCGGGGTAGT----G--C-CCTGCTCGTTTCGTCGGTTGGCTTAGGCAT
646 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * *
5338041 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGTAGCAC
711 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CGAGGGTTGCAGCAGCAGGATCGGCAGCAC
** * * * * * * * *
5338106 TTAGAGGGGGACCCGACCGATCCCTGTCTTGCGCATCCCGCCCTTCTGGTCGGTTGAACGCCCGA
775 GCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCC-TCTAGCCGGCTGAGCGCCCGC
*
5338171 ATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
5338222 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGG-TGACAACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG-CGGCAGCACATGCTGG
** * * *
5338286 GCTCGGGCATGTGCTGGTGCCATATTTTTCTTC-AC-TGG-ACCATC-----G--T--CGGAGAA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTGGAGCATCACCGAGAA
* * *
5338339 CCTGACTGGCGGCATTGAGG-TTCTGGCGAT-GGAGTGGGCCGGGGGGGATGTGTGCACATGATG
130 CCTGACCGGCGGCATTGGGGTTTC-GGCGATCGG-G-GGGCCGGGGGGG-TGTGCGCACATGATG
5338402 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
5338467 ACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
256 ACACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
5338532 ATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTT
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * ** *
5338597 GTGCATGCCAACAAAAATACAAGGATTATGTCTACCAAGTTTGGGGTGAAAACTCCCTCCG-AAA
385 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
5338661 AATTTTAAAAAATCCTGAACGGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
450 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
5338726 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
5338791 ATTGGCATGCAGAAATATGAAGATGTGCCTAAA-CAACCTACCACCCTATCGATCCACGGCTTGC
580 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
5338855 ACATCCCGTCTCTCTGGCCGGCGTAGTCCCCGACCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
645 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
** * *
5338920 TACGGAGTTCATTCCCAGTCTAAGATCGGACC-GAACAGAGGGTTGTGGCAGCAGGATCAGCAAC
710 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-AC-GAGGGTTGCAGCAGCAGGATCGGCAGC
* * * * * * * *
5338984 ACACAGAGGGAGACCC-AGTCGATCCCTGGCTTGTGCGTCCTGCCCCTCTGGCCGGCTGAGCACC
773 ACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCG-CCCTCTAGCCGGCTGAGCGCC
5339048 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
5339102 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-GGTTGCAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * **
5339166 CTTGGGCATGTGTTGGAGCTGCATTTTTCTTCGTCGGGGAACCATCGTCGTAGCATCGGCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT-GGAGCATCACCG-AGA
* * * *
5339231 ACCTAACCGGCGGCATT-GGGATTCAGACGATCGGGGGGGCCGGCGAGGGTGTGCGCACATGATG
129 ACCTGACCGGCGGCATTGGGGTTTC-GGCGATC-GGGGGGCCGG-GGGGGTGTGCGCACATGATG
* * * *
5339295 TGCGATGGATGCCGGTACTTGGCTCTTTTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
5339360 ACACCTCCTAAAAGACCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTGAA
256 ACACC-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * * * *
5339425 TTGAGGACAC-CTTTTGAAATGGTCACAAAAAGCTTGTACACTTTGAGTTTTTAGCTAAATTTTT
320 ATGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTT
* * *
5339489 TTGCGCATGCCAACAAAAATACAAGGATCATGTCT-CCAACTTTGGGGCCAAAACTCCTTCCGAA
383 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * *
5339553 AAAATTTTAAAAAATCTCGCACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGT
448 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
5339618 CTTGCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATG
513 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*** * *
5339683 GCATTGGCACATAGAAATATGAAAATGTGCCTAAACCCACCTACCATCCGTATCGATCCACGGCT
578 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCCTATCGATCCACGGCT
* * *
5339748 TGCGCATCACGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCGCCGTTCGTTTCATCGGTTG
642 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CCG-C--TCGTTTCGTCGGTTG
* * *
5339813 GCTTAGTCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACGAGGGTTG-AGGCAGCAAGA
701 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACGAGGGTTGCA-GCAGCAGGA
* ** * * * * * * *
5339877 TCAGCAGCACGCAGAGGGGGACCCGGCCGATCCCTGGCCTGCGAAACCCACCCCACTGGCCGGCT
765 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCC-GCCCTCTAGCCGGCT
* **
5339942 AAGCAACCGCACGCTCGTTTCGTGGG-TGAC-T-----TA--G-G--------CA---T-A
829 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
5339981 -C--A--GAGTTCATTGCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
5340041 CTCGGGCATGTGTTCGTGTCGCATTTTTCTTC-ACAGGGGCACCATCGTTGGAGCATCGCAGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCG-TGGAGCATCAC-CGAG
* * * * * *
5340105 AACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGAGGCC-GGGGGGTGTTCACAAATGATGT
128 AACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGG-GGCCGGGGGGGTGTGCGCACATGATGT
*
5340169 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
5340234 CACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
5340299 TGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTG
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT-
* ** * *
5340364 GTGCATGCCAACAAAAATACAAGGATCATGTCTAAGAAGTTTGGGACCAAAACTCCTTCTGAAAA
385 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* ** * *
5340429 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAGAACGAGTCATCT
450 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * *
5340494 TGCCATGAAACTTCGCGTCAAGGCTTAAGGGACGATTGTATGAATTTAAAAGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*** *
5340559 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCC
580 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
5340624 GCATCCCGTCTCTCTGGTCGGCGTGGTGCCTGCCCGTCCGCCCGCCTACTCGTTTTGTCGGTTGG
645 GCATCCCGTCTCTCTGGCCGGCGT--AG--TGCCCGCCCGCCCG----CTCGTTTCGTCGGTTGG
* * * * * * * * *
5340689 CTTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAAGGTTACAGTAGTAGGAT
702 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC-GAGGGTTGCAGCAGCAGGAT
** * ** * *
5340754 CGATAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCAACCACTCTGGTCGGCTG
766 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCC-CTCTAGCCGGCTG
* * * * * *
5340819 AGCACCCGCGCGCTCATTTCGTCGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
830 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
5340879 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACAGAGGGTTGCGGTAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
5340935 GGATTGGGAG
Statistics
Matches: 7481, Mismatches: 1082, Indels: 954
0.79 0.11 0.10
Matches are distributed among these distances:
853 66 0.01
855 1 0.00
857 1 0.00
859 1 0.00
863 1 0.00
868 66 0.01
869 29 0.00
870 8 0.00
871 156 0.02
872 282 0.04
873 378 0.05
874 243 0.03
875 151 0.02
876 96 0.01
877 177 0.02
878 7 0.00
879 78 0.01
880 952 0.13
881 11 0.00
882 390 0.05
883 301 0.04
884 63 0.01
885 9 0.00
886 37 0.00
887 11 0.00
888 9 0.00
889 64 0.01
890 320 0.04
891 398 0.05
892 27 0.00
893 236 0.03
894 381 0.05
895 16 0.00
896 57 0.01
897 556 0.07
898 54 0.01
899 82 0.01
900 352 0.05
901 346 0.05
902 120 0.02
903 48 0.01
904 2 0.00
905 1 0.00
907 2 0.00
908 4 0.00
909 5 0.00
910 5 0.00
912 1 0.00
913 2 0.00
914 1 0.00
915 1 0.00
916 4 0.00
917 1 0.00
918 4 0.00
919 3 0.00
920 2 0.00
921 6 0.00
922 9 0.00
923 13 0.00
924 12 0.00
925 10 0.00
926 2 0.00
927 20 0.00
928 13 0.00
929 17 0.00
930 17 0.00
931 7 0.00
932 13 0.00
933 7 0.00
934 8 0.00
935 18 0.00
936 11 0.00
937 14 0.00
938 12 0.00
939 2 0.00
940 5 0.00
941 3 0.00
942 2 0.00
943 2 0.00
944 2 0.00
945 2 0.00
946 2 0.00
947 3 0.00
948 4 0.00
949 2 0.00
950 12 0.00
951 13 0.00
952 12 0.00
953 17 0.00
954 8 0.00
955 5 0.00
956 14 0.00
957 7 0.00
958 7 0.00
959 2 0.00
960 9 0.00
961 17 0.00
962 1 0.00
963 7 0.00
964 13 0.00
965 7 0.00
966 19 0.00
967 8 0.00
968 2 0.00
969 8 0.00
970 3 0.00
972 1 0.00
974 1 0.00
975 1 0.00
976 1 0.00
979 2 0.00
982 1 0.00
983 2 0.00
986 2 0.00
987 4 0.00
988 3 0.00
989 4 0.00
990 6 0.00
991 1 0.00
992 3 0.00
993 3 0.00
994 6 0.00
995 7 0.00
997 2 0.00
1000 9 0.00
1001 7 0.00
1002 10 0.00
1003 5 0.00
1004 3 0.00
1005 1 0.00
1007 182 0.02
1008 8 0.00
1009 1 0.00
1011 1 0.00
1012 1 0.00
1013 1 0.00
1015 2 0.00
1016 83 0.01
1024 556 0.07
1025 417 0.06
1026 289 0.04
1027 345 0.05
1028 319 0.04
1029 289 0.04
1030 381 0.05
1031 317 0.04
1032 299 0.04
1033 863 0.12
1034 341 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (889 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTGGAGCATCACCGAGAAC
CTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCGGACCAGACGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAG
GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCTCTAGCCGGCTGAGCGCCCGCACGCTCG
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5332801 original size:26 final size:26
Alignment explanation
Indices: 5332765--5332817 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5332755 GTTGACTTAG
5332765 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCGCAGTCTAA
*
5332791 GCATACGGAGTTCATTTGCAGTCTAA
1 GCATACGGAGTTCATTCGCAGTCTAA
5332817 G
1 G
5332818 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCGCAGTCTAA
Found at i:5333692 original size:26 final size:26
Alignment explanation
Indices: 5333656--5333706 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
5333646 TTGACTTAGG
**
5333656 CATATGAAGTTCATTTGCAATCTAAA
1 CATATGAAGTTCATTCCCAATCTAAA
*
5333682 CATATGGAGTTCATTCCCAATCTAA
1 CATATGAAGTTCATTCCCAATCTAA
5333707 GATTGGACCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.35, C:0.20, G:0.12, T:0.33
Consensus pattern (26 bp):
CATATGAAGTTCATTCCCAATCTAAA
Found at i:5335584 original size:158 final size:159
Alignment explanation
Indices: 5335236--5335610 Score: 495
Period size: 159 Copynumber: 2.4 Consensus size: 159
5335226 TCGCCCGCCT
* * * * * * *
5335236 GCCCGCCCGCTCTTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCACTCTAAGATCGGAC
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGAC
* * * * * *
5335301 CGGACAGAGGGTTGTGGCAGCAGGATTGACAACACGTAGAGGGGGACCCGATCGATCCCCGGCTT
66 CGGACAGAGGGTTGCGACAGCAAGATTGACAACACGCAGAGGGGGACCCGATCGATCCCCGACTC
*
5335366 GCGCATCCCGCCCCTCTACCCGACTGAGC
131 GCACATCCCGCCCCTCTACCCGACTGAGC
*
5335395 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCCGAC
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGAC
* * * *
5335460 CGGACCGAGGGTTGCGACAGCAAGATTGATAGCACGCAGAGGGTG-CCCGA-CAGATCCCCGACT
66 CGGACAGAGGGTTGCGACAGCAAGATTGACAACACGCAGAGGGGGACCCGATC-GATCCCCGACT
* **
5335523 CGCACATCTCGCCCCTCTGGCCGACTGAGC
130 CGCACATCCCGCCCCTCTACCCGACTGAGC
* *
5335553 AG-CCGCACGCTCGTTCCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG
1 -GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
5335611 CATACGGAGT
Statistics
Matches: 189, Mismatches: 25, Indels: 5
0.86 0.11 0.02
Matches are distributed among these distances:
157 1 0.01
158 93 0.49
159 95 0.50
ACGTcount: A:0.19, C:0.31, G:0.28, T:0.21
Consensus pattern (159 bp):
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGAC
CGGACAGAGGGTTGCGACAGCAAGATTGACAACACGCAGAGGGGGACCCGATCGATCCCCGACTC
GCACATCCCGCCCCTCTACCCGACTGAGC
Found at i:5337365 original size:26 final size:26
Alignment explanation
Indices: 5337313--5337365 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5337303 GTTGACTTAG
* *
5337313 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5337339 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5337365 G
1 G
5337366 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5338232 original size:26 final size:26
Alignment explanation
Indices: 5338196--5338248 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5338186 GTTGACTTAG
5338196 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5338222 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5338248 G
1 G
5338249 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5339112 original size:26 final size:26
Alignment explanation
Indices: 5339076--5339128 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5339066 GTTGACTTAG
*
5339076 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5339102 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5339128 G
1 G
5339129 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5340394 original size:873 final size:875
Alignment explanation
Indices: 5336608--5340889 Score: 5186
Period size: 873 Copynumber: 4.8 Consensus size: 875
5336598 CCGACGATCA
* ** *
5336608 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTTGTACTTTACCCTTATATTGGCCCCCTAACC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
5336673 CTCATCAAACCTGGAGAACTCACACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * **
5336738 GTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTAAAATAATCACAAAATCTTGTACACTTC
130 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
5336803 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAAGTCTACCAAGTTTG
195 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTG
* * *
5336868 GGGCCAAAAATCCTTCCGAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGA
260 GGGCCAAAACTCCTTCCGAAAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCATGA
*
5336933 AAAATAGAAAACGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
324 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
*
5336998 TTTACAAGCCAGAAAAATGGCATTGGCATGCA-A-AAATATGAAGATGTGCCTAAACCCACCTAC
389 TTTACAAGCCATAAAAATGGCATTGGCA--CATAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
5337061 CACCCTATCGATCCACGGCTTACGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCTCCCGCCCACC
452 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-CCCGCCC-GC
** *
5337126 CGCCCGCTT-GTTTCGTCGGTTGGCTTAAGCATACGGAGTTCATTCGGAATCTAAGATCGGACCA
515 CG-CCG-TTCGTTTCGTCGGTTGGCTT-AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
* * * * * * *
5337190 GACCGAGGGTTGCGGCAGCAAGATCAGCAGCACATAGAGGGGGACCCAGCCAATCCCCGGCTAGC
577 GA-CGAGGGTTGAGGCAGCAGGATCAGCAGCACACAGAGGGGGACCCGGCCGATCCCTGGCTTGC
* * ** * *
5337255 GCATCTCACCCCTCTAGCTAGCTGAGCACCCGCACGCTCATTTCGTGTGTTGACTTAGGCATACG
641 GCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTG-GGTGACTTAGGCATACG
* * *
5337320 GAGTTCATTCCCAGTGTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGT
705 GAGTTCATTCCCAGTCTAAGCATAC--AG---AGT----ATC------CGGACCAGA-CGA-GGT
** * * * * * * *
5337385 TGTGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCTCATTTCTCTTCGTCGAGGCATCATC
753 TGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGACGGGGCACCATC
* * * *
5337450 GTCAGAGCATCGCCGAAGAACCTGACTGGTGGCATTGGGGTTCCGGTGATCGGGGGGCC
818 GTCGGAGCATCG-CGAAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCC
*
5337509 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAACC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
5337574 CTCTTCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA-ATTTTACAGCTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
5337638 GTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
130 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
5337703 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC-AGTTTG
195 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTG
* * * * *
5337767 GGGCCAAATCTCCTTCTGCAAAAATTTTAAAAAAATCCTGAACTGTAAAGAGTTT-AAAAATCAT
260 GGGCCAAAACTCCTTCCG-AAAAATTTT-AAAAAATCC-GAACCGCAAAAAGTTTCAAAAATCAT
*
5337831 GAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
322 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * ** * *
5337896 AATTTACAAGCGATGAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTTAACCCACCTAG
387 AATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
5337961 CACCCTATCGATCCACGGCTTGCGCATCCCG-C-CTCTGTCCGGGGTAGT-------G-CC-CTG
452 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCCGCCCGCCG
*
5338015 -C--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATC
517 CCGTTCGTTTCGTCGGTTGGCTTA-GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-C
* * * ** * *
5338077 GAGGGTTGCGGCAGCAGGATCGGTAGCACTTAGAGGGGGACCCGACCGATCCCTGTCTTGCGCAT
580 GAGGGTTGAGGCAGCAGGATCAGCAGCACACAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCAT
* * * * * * * *
5338142 CCCGCCCTTCTGGTCGGTTGAACGCCCGAATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
645 CCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGG-TGACTTAGGCATACGGAGT
* * *
5338207 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTGACA
709 TCATTCCCAGTCTAAGCATACAGAG-T-A-T-CC-G-----GA-C----CAGA-CGAGGTTG-CA
* ** *
5338272 ACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTC-AC-TGG-ACCA---TC-
757 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGACGGGGCACCATCGTCG
* * *
5338330 --G--TCG-G-AGAACCTGACTGGCGGCATTGAGGTTCTGGCGAT-GGAGTGGGCC
822 GAGCATCGCGAAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGG-G-GGGCC
*
5338379 GGGGGGGATGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
1 -GGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
5338444 CCCTCATCAAACCTCGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
64 CCCTCATCAAACCTCGAGAACTCACACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
5338509 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACT
128 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
5338574 TCGAGTTTTTGGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATTATGTCTACCAAGTT
193 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTT
** * *
5338638 TGGGGTGAAAACTCCCTCCGAAAAATTTTAAAAAATCCTGAACGGCAAAAAGTTTCAAAAATCAT
258 TGGGGCCAAAACTCCTTCCGAAAAATTTTAAAAAATCC-GAACCGCAAAAAGTTTCAAAAATCAT
5338703 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
322 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*** *
5338768 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA-CAACCTAC
387 AATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
5338832 CACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGT---CCCCGACCG-C-
452 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCCGCCCGCCG
*
5338892 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GAAC
517 CCGTTCGTTTCGTCGGTTGGCTTA-GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-AC
* * * * * * *
5338956 AGAGGGTTGTGGCAGCAGGATCAGCAACACACAGAGGGAGACCCAGTCGATCCCTGGCTTGTGCG
580 -GAGGGTTGAGGCAGCAGGATCAGCAGCACACAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCA
**
5339021 TCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
644 TCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGG-TGACTTAGGCATACGGAG
5339086 TTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGTTGCA
708 TTCATTCCCAGTCTAAGCATACAGAG-----T---A-TC------CGGACCAGA-CGAGGTTGCA
* * * * * * *
5339151 GTAGCACATGCTGGGCTTGGGCATGTGTTGGAGCTGCATTTTTCTTCGTCGGGGAACCATCGTCG
757 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGACGGGGCACCATCGTCG
* * * * *
5339216 TAGCATCGGCGAAGAACCTAACCGGCGGCATTGGGATTCAGACGATCGGGGGGGCC
822 GAGCATC-GCGAAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCC
* * * *
5339272 GGCGAGGGTGTGCGCACATGATGTGCGATGGATGCCGGTACTTGGCTCTTTTATTGGCCCCCTAT
1 GG-G-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
5339337 CCCTCATCAAACCTCGAGAACTCACACCTCCTAAAAGACCATTTGAGATTTTACAGGTTTGCTGC
64 CCCTCATCAAACCTCGAGAACTCACACC-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * * * * *
5339402 TAGTAGCCATTAAAGTGTTTGAATTGAGGACAC-CTTTTGAAATGGTCACAAAAAGCTTGTACAC
128 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACAC
* * * *
5339466 TTTGAGTTTTTAGCTAAATTTTTTTGCGCATGCCAACAAAAATACAAGGATCATGTCT-CCAACT
192 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGT
*
5339530 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGCACCGCAAAAAGTTTCAAAAATC
257 TTGGGGCCAAAACTCCTTCCG-AAAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATC
* *
5339595 ATGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTA
320 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
5339660 TGAATTTACAAACCATAAAAATGGCATTGGCACATAGAAATATGAAAATGTGCCTAAACCCACCT
385 TGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
5339725 ACCATCCGTATCGATCCACGGCTTGCGCATCACGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
450 ACCA-CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-CCCGCCC
* *
5339790 GCCGCCGTTCGTTTCATCGGTTGGCTTAGTCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
513 GCCGCCGTTCGTTTCGTCGGTTGGCTTAG-CATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
* * *
5339855 GACGAGGGTTGAGGCAGCAAGATCAGCAGCACGCAGAGGGGGACCCGGCCGATCCCTGGCCTGCG
577 GACGAGGGTTGAGGCAGCAGGATCAGCAGCACACAGAGGGGGACCCGGCCGATCCCTGGCTTGCG
* * * * * *
5339920 AAACCCACCCCACTGGCCGGCTAAGCAACCGCACGCTCGTTTCGTGGGTGACTTAGGCATACAGA
642 CATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTGACTTAGGCATACGGA
* **
5339985 GTTCATTGCCAGTCTAAG-AT-C-G-G-A-CCGGACC-GA-G-GGTTGTGGCAGCACATGCTGGG
707 GTTCATTCCCAGTCTAAGCATACAGAGTATCCGGACCAGACGAGGTTGCAGCAGCACATGCTGGG
* * * * *
5340041 CTCGGGCATGTGTTCGTGTCGCATTTTTCTTC-ACAGGGGCACCATCGTTGGAGCATCGCAGGAG
772 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGAC-GGGGCACCATCGTCGGAGCATCGC-GAAG
* *
5340105 AACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGAGGCC
835 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGG-GGCC
* * *
5340147 GGGGGGTGTTCACAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
5340212 CTCATTAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
5340277 GTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
130 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* **
5340342 GAGTTTTTAGCTGAATTTTTTGGTGCATGCCAACAAAAATACAAGGATCATGTCTAAGAAGTTTG
195 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTG
* * **
5340407 GGACCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTG
260 GGGCCAAAACTCCTTCCG-AAAAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCATG
* * * * *
5340472 AAAAATAGAGAACGAGTCATCTTGCCATGAAACTTCGCGTCAAGGCTTAAGGGACGATTGTATGA
323 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
5340537 ATTTAAAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACC
388 ATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * *
5340602 ACCCTATCGATCCACGGCTTCCGCATCCCGTCTCTCTGGTCGGCGTGGTGCCTGCCCGTCCGCCC
453 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC-CCCCGCCCG-CC
* * * * *
5340667 GCC-TACTCGTTTTGTCGGTTGGCTTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGG
516 GCCGT--TCGTTTCGTCGGTTGGCTT-AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* * * * * * * *
5340731 ACTGAAGGTT-ACAGTAGTAGGATC-GATAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTG
578 AC-GAGGGTTGA-GGCAGCAGGATCAG-CAGCACACAGAGGGGGACCCGGCCGATCCCTGGCTTG
* * * * * *
5340794 CGCATCCAACCACTCTGGTCGGCTGAGCACCCGCGCGCTCATTTCGTCGGTTGACTTAGGCATAC
640 CGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGT-GGGTGACTTAGGCATAC
* * *
5340859 AGAGTTCATCCCCAGTCTAAGCATACGGAGT
704 GGAGTTCATTCCCAGTCTAAGCATACAGAGT
5340890 TCATTCCCAG
Statistics
Matches: 2962, Mismatches: 309, Indels: 239
0.84 0.09 0.07
Matches are distributed among these distances:
868 2 0.00
869 31 0.01
870 6 0.00
871 69 0.02
872 274 0.09
873 393 0.13
874 213 0.07
875 156 0.05
876 88 0.03
877 39 0.01
878 11 0.00
879 52 0.02
880 205 0.07
881 6 0.00
882 12 0.00
883 224 0.08
884 3 0.00
885 7 0.00
886 3 0.00
887 3 0.00
888 1 0.00
889 2 0.00
890 4 0.00
891 2 0.00
892 16 0.01
893 226 0.08
894 198 0.07
895 12 0.00
896 45 0.02
897 1 0.00
898 15 0.01
899 26 0.01
900 341 0.12
901 218 0.07
902 57 0.02
903 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (875 bp):
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGG
GGCCAAAACTCCTTCCGAAAAATTTTAAAAAATCCGAACCGCAAAAAGTTTCAAAAATCATGAAA
AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCCGCCCGCCGCCGT
TCGTTTCGTCGGTTGGCTTAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACGAGGGT
TGAGGCAGCAGGATCAGCAGCACACAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCACC
CCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTGACTTAGGCATACGGAGTTCATTCC
CAGTCTAAGCATACAGAGTATCCGGACCAGACGAGGTTGCAGCAGCACATGCTGGGCTCGGGCAT
GTGCTGGTGCCGCATTTTTCTTCGACGGGGCACCATCGTCGGAGCATCGCGAAGAACCTGACCGG
CGGCATTGGGGTTCCGGCGATCGGGGGGCC
Found at i:5340889 original size:26 final size:26
Alignment explanation
Indices: 5340853--5340905 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5340843 GTTGACTTAG
5340853 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
5340879 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
5340905 G
1 G
5340906 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:5341006 original size:185 final size:185
Alignment explanation
Indices: 5340691--5341098 Score: 539
Period size: 185 Copynumber: 2.2 Consensus size: 185
5340681 TCGGTTGGCT
* * * * * *
5340691 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAAGGTTACAGTAGTAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACAGAAGGTTACAGTAGCAGGATCG
* * * * * *
5340756 ATAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCAACCACTCTGGTCGGCTGAG
66 AGAGCACGCAGAGGAGGACCCGGTCGATCCCCGACTTCCACATCCAACCACTCTGGCCGGCTGAG
*
5340821 CACCCGCGCGCTCATTTCGTCGGTTGACTTAGGCATACAGAGTTCATCCCCAGTC
131 CACCCGCACGCTCATTTCGTCGGTTGACTTAGGCATACAGAGTTCATCCCCAGTC
* * * * *
5340876 TAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACAGAGGGTTGCGGTAGCAGGATTG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACAGAAGGTTACAGTAGCAGGATCG
* * * * *
5340941 GGAGCTCGTAGAGGAGGACCCGGTCGATCCCCGACTTCCACATCTC-ACCCCTCTGGCCTGCTGA
66 AGAGCACGCAGAGGAGGACCCGGTCGATCCCCGACTTCCACATC-CAACCACTCTGGCCGGCTGA
* * * * *
5341005 GCACTCGCACGCTCGTTTCGTGGGTTGACTTAGGGATACAGAGTTCATTCCCAGTC
130 GCACCCGCACGCTCATTTCGTCGGTTGACTTAGGCATACAGAGTTCATCCCCAGTC
*
5341061 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACC
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
5341099 AGACCAAGGT
Statistics
Matches: 192, Mismatches: 30, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
185 191 0.99
186 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.23
Consensus pattern (185 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACAGAAGGTTACAGTAGCAGGATCG
AGAGCACGCAGAGGAGGACCCGGTCGATCCCCGACTTCCACATCCAACCACTCTGGCCGGCTGAG
CACCCGCACGCTCATTTCGTCGGTTGACTTAGGCATACAGAGTTCATCCCCAGTC
Found at i:5341076 original size:26 final size:26
Alignment explanation
Indices: 5341040--5341090 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
5341030 TGACTTAGGG
5341040 ATACAGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
5341066 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
5341091 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:5341980 original size:26 final size:26
Alignment explanation
Indices: 5341941--5341993 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5341931 GTTGACTTAT
5341941 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
* *
5341967 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
5341993 G
1 G
5341994 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:5342669 original size:892 final size:895
Alignment explanation
Indices: 5340877--5342887 Score: 2812
Period size: 892 Copynumber: 2.2 Consensus size: 895
5340867 TCCCCAGTCT
* *
5340877 AAGCATACGGAGTTCATTCCCAGTCTAAGATTGGAC-CGAAC-AGAGGGTTGCGGTAGCAGGATT
1 AAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAG-ACTA-AGGGTTGCAGTAGCAGGATT
** * * * * * *
5340940 GGGAGCTCGTAGA-GGAGGACCCGGTCGATCCCCGACTTCCACATCTCACCCCTCTGGCCTGCTG
64 GACAGCACGCAGAGGGA-GACCCGGTCGATCCCCGACTTGCGCATC-CACCACTCTGGCCGGCTG
* * *
5341004 AGCACTCGCACGCTCGTTTCGTGGGTTGACTTAGGGATACAGAGTTCATTCCCAGTCTAAGCATA
127 AGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA
* * *
5341069 CAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGTTGCGGCAGCACATGCTGGGCTTGGG
192 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGTTGCGGCAGCACATGCTGGGCTCGGG
5341134 CATGTGTTGGAGCTACATTTTTCTTCATCGGGGAACCATCGCCGTAGCATCGGCGGAGAACCTAA
257 CATGTGTTGGAGCTACATTTTTCTTCATCGGGGAACCAT--CC---GCA-C-GCGGAGAACCTAA
* * *
5341199 CCGACGGCATTGGGATTTCGACGATCGGGGGGGCCGGCGAGGGTGTGCGCACATGATGTGTGATG
315 CCGACGGCATTGGGATTCCAACGATCGGGGGGGCCGGCGAGGGTGTGCGCACATGATGTGCGATG
* *
5341264 GGTGCCGGTACTTGGCCCTTTTATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
380 GGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
5341329 CTTAAAGAGCATTTGAGATTTTACAAGGTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
445 CTTAAAGAGCATTTGAGATTTTACAAGGTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* ** *
5341394 CACTTTTTTCAAATGGTAACAAAATCTTATATGCTCTGAGTTTTTGGCTGAATTTTTTTGTGCAT
510 CACTTTTTTCAAACGGTAACAAAATCTTATACACTCTGAGTTTTTAGCTGAATTTTTTTGTGCAT
**
5341459 GCCAGCAAAAATACAAGGATCACGTTACCAAATTTGGAGCCAAAACTCCTTCCAAAAAAATTTTA
575 GCCAAAAAAAATACAAGGATCACGTTACCAAATTTGGAGCCAAAACTCCTTCCAAAAAAATTTTA
* * *
5341524 AAAAATCCCGAACCATAAAAAATTTTAAAAATCGTGAAAGATAGAAAACGAGTCGTCTTGCCATG
640 AAAAATCCCGAACCATAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
5341589 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
705 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
5341654 CAAAGAAATATGAAGATGTGCATAAACCCACCGACCACCCTATCGATCCACGGCTTGCGCATCCC
770 CAAAGAAATATGAAGATGTGCATAAACCCACCGACCACCCTATCGATCCACGGCTTGCGCATCCC
* *
5341719 GTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGTCCACCCGCTCATTTCATCGGTTGGCTG
835 GTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCACCCACTCATTTCATCGGTTGGCTG
* * * *
5341780 AGGCATACGGACTTCATTCCCAGTCTAAGATTGGACTAGACTAAGGGTTGCAGCAACAGGATTGA
1 AAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACTAAGGGTTGCAGTAGCAGGATTGA
* ** * * *
5341845 CAGCACACAGAGGGAGACCCGACCGAACCCCGACTTGCGCATCACGCCTCTCTGGCCGGCTGAGC
66 CAGCACGCAGAGGGAGACCCGGTCGATCCCCGACTTGCGCATC-CACCACTCTGGCCGGCTGAGC
* *
5341910 ACCCGCACGCTCATTTCGTGGGTTGACTTATGCATAC-GAAATTCATTCCCAGTCTAAGCATACG
130 ACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAAGCATACG
* * *
5341974 GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
194 GAGTTCATTCCCAGTCTAAGATCAGACCAGA-CCAAGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * **
5342039 ATGTGTTGGTGTTGCATTTTTCTTCATC-GGGACACCAT-C-C-C-CGGAGAACCTGACCGGTGG
258 ATGTGTTGGAGCTACATTTTTCTTCATCGGGGA-ACCATCCGCACGCGGAGAACCTAACCGACGG
* * *
5342099 CATTGGGGTTCCAACGAT-TGGGGGG-CGG-G-GGGTGTGCGCACATGATGTGCGATGGGTGCGG
322 CATTGGGATTCCAACGATCGGGGGGGCCGGCGAGGGTGTGCGCACATGATGTGCGATGGGTGCCG
* *
5342160 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCGTTAAAG
387 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
5342225 AGCATTTGAGATTTTAC-AGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGGGACACTTT
452 AGCATTTGAGATTTTACAAGG-TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * *
5342289 TTTCAAACGGTCACGAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTAGTGCATGCCAA
516 TTTCAAACGGTAACAAAATCTTATACACTCTGAGTTTTTAGCTGAATTTTTTT-GTGCATGCCAA
* * * *
5342354 AAAAAATACAATGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
580 AAAAAATACAAGGATCACGT-TACCAAATTTGGAGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
* * *
5342419 ATCCCGAACCCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAA
644 ATCCCGAA-CCATAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
5342484 CTTCACGTGACGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATGGCATTGGCACAT
708 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAA
* *
5342549 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
773 AGAAATATGAAGATGTGCATAAACCCACCGACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * ** * * * * ** *
5342614 TCTCTGGTCGGCGTGGTGCCTGCCCGTCCGCCCGCCTACTCGTTTTGTCGGTTGGCTT
838 TCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCACCCACTCATTTCATCGGTTGGCTG
* ** * * * *
5342672 AAGCATATGGAGTTCATTCCCAGTCTAAGATCAGA-TCGGACTGAA-GGTTACAGTAGTAGGATC
1 AAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACT-AGACT-AAGGGTTGCAGTAGCAGGATT
* * * *
5342735 GATAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCAACCACTCTGGTCGGCTGA
64 GACAGCACGCAGAGGGAGACCCGGTCGATCCCCGACTTGCGCATCC-ACCACTCTGGCCGGCTGA
* * *
5342800 GCACCCGCGCGCTCATTTCGTCGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATAC
128 GCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAC
5342865 GGAGTTCATTCCCAGTCTAAGAT
193 GGAGTTCATTCCCAGTCTAAGAT
5342888 TGGATCGAAC
Statistics
Matches: 982, Mismatches: 112, Indels: 39
0.87 0.10 0.03
Matches are distributed among these distances:
888 3 0.00
889 195 0.20
890 29 0.03
891 54 0.05
892 407 0.41
893 34 0.03
895 1 0.00
897 1 0.00
901 1 0.00
902 1 0.00
903 191 0.19
904 65 0.07
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
AAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACTAAGGGTTGCAGTAGCAGGATTGA
CAGCACGCAGAGGGAGACCCGGTCGATCCCCGACTTGCGCATCCACCACTCTGGCCGGCTGAGCA
CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
TGTTGGAGCTACATTTTTCTTCATCGGGGAACCATCCGCACGCGGAGAACCTAACCGACGGCATT
GGGATTCCAACGATCGGGGGGGCCGGCGAGGGTGTGCGCACATGATGTGCGATGGGTGCCGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAAGGTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AACGGTAACAAAATCTTATACACTCTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
TACAAGGATCACGTTACCAAATTTGGAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGA
ACCATAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAAAGAAATAT
GAAGATGTGCATAAACCCACCGACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
CGGCGTAGTGCCCACCCGCCCGCCCACCCACTCATTTCATCGGTTGGCTG
Found at i:5342869 original size:26 final size:26
Alignment explanation
Indices: 5342833--5342885 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5342823 GTTGACTTAG
5342833 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
5342859 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
5342885 G
1 G
5342886 ATTGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:5342986 original size:185 final size:185
Alignment explanation
Indices: 5342671--5343073 Score: 547
Period size: 185 Copynumber: 2.2 Consensus size: 185
5342661 TCGGTTGGCT
* * * *
5342671 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAAGGTTACAGTAGTAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACAGAAGGTTACAGTAGCAGGATCG
* * * * * *
5342736 ATAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCAACCACTCTGGTCGGCTGAG
66 AGAGCACGCAGAGGAGGACCCGGTCGATCCCCGACTTCCACATCCAACCACTCTGGCCGGCTGAG
*
5342801 CACCCGCGCGCTCATTTCGTCGGTTGACTTAGGCATACAGAGTTCATCCCCAGTC
131 CACCCGCACGCTCATTTCGTCGGTTGACTTAGGCATACAGAGTTCATCCCCAGTC
** * * *
5342856 TAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGAACAGAGGGTTGCGGTAGCAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACAGAAGGTTACAGTAGCAGGATCG
* * * * *
5342921 GGAGCTCGTAGAGGAGGACCCGGTCGATCCCCGACTTCCACATCTC-ACCCCTCTGGCCTGCTGA
66 AGAGCACGCAGAGGAGGACCCGGTCGATCCCCGACTTCCACATC-CAACCACTCTGGCCGGCTGA
* * * * *
5342985 GCACTCGCACGCTCGTTTCGTGGGTTGACTTAGGGATACAGAGTTCATTCCCAGTC
130 GCACCCGCACGCTCATTTCGTCGGTTGACTTAGGCATACAGAGTTCATCCCCAGTC
*
5343041 TAAGCATACAGAGTTCATTCCCAGTCTAAGATC
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATC
5343074 GAACCAGACC
Statistics
Matches: 189, Mismatches: 28, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
185 188 0.99
186 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.23
Consensus pattern (185 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACAGAAGGTTACAGTAGCAGGATCG
AGAGCACGCAGAGGAGGACCCGGTCGATCCCCGACTTCCACATCCAACCACTCTGGCCGGCTGAG
CACCCGCACGCTCATTTCGTCGGTTGACTTAGGCATACAGAGTTCATCCCCAGTC
Found at i:5343056 original size:26 final size:26
Alignment explanation
Indices: 5343020--5343070 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
5343010 TGACTTAGGG
5343020 ATACAGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
5343046 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
5343071 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:5343962 original size:26 final size:26
Alignment explanation
Indices: 5343926--5343997 Score: 126
Period size: 26 Copynumber: 2.8 Consensus size: 26
5343916 TAGGCATACG
5343926 GAGTTCATTCCCAGTCTAAGCACACA
1 GAGTTCATTCCCAGTCTAAGCACACA
* *
5343952 GAGTTCATTCCCAGTCTAAGCATACG
1 GAGTTCATTCCCAGTCTAAGCACACA
5343978 GAGTTCATTCCCAGTCTAAG
1 GAGTTCATTCCCAGTCTAAG
5343998 ATCAGACCGG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (26 bp):
GAGTTCATTCCCAGTCTAAGCACACA
Found at i:5344603 original size:922 final size:917
Alignment explanation
Indices: 5343022--5354055 Score: 6326
Period size: 902 Copynumber: 12.0 Consensus size: 917
5343012 ACTTAGGGAT
* *
5343022 ACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAG
1 ACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG-ACCGGACCGAG
* *
5343087 GGTTGCAACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACC
65 GGTTGCGACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCTGCATTTTTCTTCATCGGGGCACC
* * * *
5343152 ATCGTCGGACCATCACCGGAGAACCTGACCGGCGGCATTAGGGTTCTGACGATCGGGGGTGCCGG
130 ATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-G
* * *
5343217 AGGCGGTGTGCGCACAAAATGTGCGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTACCC
194 A-GCGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
5343282 CTCATCAAACCGTGAGAACTCGCACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCA
258 CTCATCAAACCTTGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
5343347 GT-GCCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
323 GTAG-CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
5343411 TGAGTTTTTAGCTGAA-TACTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
387 TGA-TTTTTTGATGAAGT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * **
5343475 TGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
450 TGGGG-CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCA
* * *
5343540 TGAAAAACAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTAT
514 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* ** * * *
5343605 GAATTTACAAGCCATAAAAATGGC-ATTGGAATGCAGAAATATGAAGATGTACCTAAACCCACCC
579 GAATTTACAAGCCATAAAAAT--CAATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCT
*
5343669 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCTCG
642 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC-C-
* * **
5343734 TCTGCTCGTTTCGTCAGTTGGATTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAA-TTGAA
705 -C-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAG-A
* * * *
5343798 CTGAGGGTTACAGCAGCAAGATCGGTAGCACACAGAGGGGGACCCGGCCGATCC-CTGGCTTACG
767 CCGAGGGTTACAGCAGCAAGATCAGTAGCACACAGAGGGAGACCCGACCGATCCTC-GGCTTACG
** * *
5343862 CATCCCGTCCCTCTGGCCGGCTGAGCA-CCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACG
831 CATCCCACCCCTCTGGCCGGCTGAG-AGCCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACG
*
5343926 GAGTTCATTCCCAGTCTAAGCAC
895 AAGTTCATTCCCAGTCTAAGCAC
*
5343949 ACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAG
1 ACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAG
* * * * *
5344014 GGTTGCGACAGCACATGCTGGGCTCGGGCATGCGTTGCTGCCGCATTTTTCTTCATCGTGGCACC
65 GGTTGCGACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCTGCATTTTTCTTCATCGGGGCACC
* * *** *
5344079 ATCGTCGGAGCATCCCCGAAGAACCTGACCAATGGCATTGGGGTTCCGACGATCGGGGGGGTC-A
130 ATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGA
5344143 GCGG-GTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
195 GCGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
5344207 CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTACCAGT
260 CATCAAACCTTGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
5344272 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-TTTCG
325 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT-G
*
5344336 ATTTTTTGATGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGG
389 ATTTTTTGATGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
*
5344401 GTCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCATGAA
454 G-CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAA
* *
5344466 AAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAAT
518 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
5344531 TTACAAGCCATAAAAATACAATTGGCACACAAAAATAT-AAGGATGTGGCTAAACCCACCTACCA
583 TTACAAGCCATAAAAAT-CAATTGGCACACAAAAATATGAA-GATGTGCCTAAACCCACCTACCA
* * * *
5344595 CCCTATCGATCCACGGCTTGCGTAGCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCTCG
646 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCG
* * * * *
5344660 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTTTAAGTTTGGACCAGACCGAGGGTT
711 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTT
* * * ** *
5344725 ACGGTAGCAAGATTAGTAGCATGCAGAGGGAGACCCGACCGATCCTCGGCTTGCGCATCCCACCC
776 ACAGCAGCAAGATCAGTAGCACACAGAGGGAGACCCGACCGATCCTCGGCTTACGCATCCCACCC
**
5344790 CTCTGGCTTGCTGAGAGCCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGAAGTTCATTCC
841 CTCTGGCCGGCTGAGAGCCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGAAGTTCATTCC
*
5344855 CAGTCTAAGCAT
906 CAGTCTAAGCAC
* * * * * * *
5344867 GCGGAGTTGATTCCCAGTCTGAGCATACGGAGTTGATTCCCAGTCTAAGATTGGACCGAACCGAG
1 ACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCGACCGGACCGAG
* * * * * * *
5344932 TGTTGCGGCAGCACAAGCTAGGCTCGCGCATGTGTTGGTGCTGTATATTTCTTCATCGGGGCACC
65 GGTTGCGACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCTGCATTTTTCTTCATCGGGGCACC
* * * * *
5344997 ATTGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGATGATCGGGGGGGCCGG
130 ATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGA
* * * *
5345062 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATACCT
195 GCGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
5345127 CATCAAACCTCGAGAACTCGCACCCACTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGT
260 CATCAAACCTTGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
5345192 AGCCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
325 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
* * *
5345257 GTTTTTAACTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGG
390 TTTTTTGA-TGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
5345322 GCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAA
454 GC-AAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAA
* * *
5345387 AAATAGAAAATGATTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAAT
518 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
** *
5345452 TTACAAGGAATAAAAATCACATTGGCACACAAAAATATGAAGATATGCCTAAACCCACCTACCAC
583 TTACAAGCCATAAAAATCA-ATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
5345517 CCTATCGATCCACGGCTT-CTGCATCCCGTCTCTCTGACCGGCATAGTGCCCGCCCGCCCACTCG
647 CCTATCGATCCACGGCTTGC-GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCG
* * * * * * *
5345581 TTTCGTCGGTTGGCTGAGGCATACGGAGTTCATTCCCAGACTAAGATTGGATCGGATCGAGGGTT
711 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTT
* * * * * * * *
5345646 GCGGCAGCAGGAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
776 ---ACAGCAGCAAGAT--CA---GTA-GC--ACACA-G-AG--G-G-----A--GACC--CGA--
* * * * * *** * * * * *
5345711 CTATCGATCCACAGTTTGCGCATTCTGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCGCT
814 C---CGATCCTCGGCTTACGCATCCCACCCCTCTGGCCGGC----TG--AG--AGCCCGCACGCT
* * * * * * *
5345776 TGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAG-ATC
868 CGTTTCATAGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCA-C
* * * * * * ***** * **
5345826 GGACCAGA-CTGAGGGTCGCGGCAG-C--AGGAT-CGACAG--CA--CGCAGAGGGGGACCCGGT
1 --A-CAGAGTTCA--TTC-C--CAGTCTAAGCATACG-GAGTTCATTCCCAGTCTAAGA-TCGAC
*** * * * ** * *** * ***
5345882 C-GATCCCCTGCTTTCG-CATC-C-TGC--CCCTCTG-GCCA-GCTG-AGCACCCGCA-CGCTCG
56 CGGA-CCGAGGGTTGCGACAGCACATGCTGGGCTC-GAG-CATG-TGTTGGTGCTGCATTTTTC-
* * ** ** ** * ** * *
5345937 GTTCGT-AGGTTA--A-C-TTAG-GCAT-A-CGGAGTTCATTCCCAGTCTAAGCATATGGAGTTG
116 -TTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC-GGC--GGCAT-TGG-G--G
* *** * * * * * * *
5345994 ATTCCAGTCTAAGATCAGATCGGACCGA-AGGT-TGCGGTAGCA-CATGCTGGGCTCGG-GCAT-
173 -TTCC-G---ACGATC-GGGGGGGCCGAGCGGTGTGC-GCA-CATAATG-TGCGATGGGTGC-TG
* * * ** ** * *** * * * *
5346054 GT-GTTGGTGCCGTAT-TT-TTCTTC-GTCGGGGCA-CCATCGTCGGAGAAC-CTG-A-CCCC-T
228 GTACTTGG-CCCTTATATTGGCCCCCTATC-CCTCATCAAACCT-TGAGAACTC-GCACCCCCTT
* * * * *** * *** * * * *
5346110 ---G-GCA-TTGGGGTTCGGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG-C-GATG
289 AAAGAGCATTTGAGATT----TTA-CAGGTTTG-CTGCCAGT-AGC-CA-TTAAAGTGTCTGA--
** * ** ** *
5346168 GGTGCTGGGACTTGGCCCTTATATTGGTCCCCTATCCCTCATC-AAACCTTGAGAACTCACACCC
343 AATG--GGGA-----CACTT-T-TT--T--CAAAT-GGTCA-CAAAATCTT--G---T-ACA---
* *** ** ** *
5346232 CCTTAAAGAGCATTTGA-G-A-TTTTACAAGTT-TGC-TGCCAGTAGCCATTA-AA-G-T---GT
384 -CTT--TGATTTTTTGATGAAGTTTT-----TTGTGCATGCCAACA-AAAATACAAGGATCACGT
* ** * * * * * *
5346286 CTGA--AA---TGGGG--ACACTTTTTTC----AAATGGTCACAAAATCTTGTACACTTCGAGTT
440 CT-ACCAAGTTTGGGGCAAAACTCCTTCCGAAAAAAT-TTTAAAAAATCCTG-A-AC--C--GTA
*** ***** * * ** * * *
5346340 TTTAGCTGACTTTTTTTGTGCATGCCAAAAA-A-AATACAAG--GATCACGTC-TAAAAAGTT--
497 AAAAG-T---TTTGAAAAT-CATG--AAAAATAGAAAACGAGTCG-TCTTGCCAT-GAAACTTCA
* * * * ** *** *
5346398 --TG-GGGC-TAA--AACTCTTTCTAAAAAAATTT----G--A-AAAAAT--ACCCGAACCACAA
553 CGTGAAGGCTTAAGGGAC-CATTGT--ATGAATTTACAAGCCATAAAAATCAATTGGCA-CACAA
* * * * *** *** * ** * * * *** **
5346448 AAAGTTTTAAAAATCGTG--AAAAATAAAAAACGAGTC-ATC-TTGCCATGAAACTT-CATGTGA
614 AAA--TATGAAGAT-GTGCCTAAACCCACCTACCACCCTATCGAT-CCACG--GCTTGCGCATCC
* * ** **** **** ** * **** * * * **
5346508 AGGCT-TAAGGGACCATTTTA-TGAATTTACAAG-CC-ATAAAAAT-GGC-ATTGGCACATAGAA
673 CGTCTCT-CTGG-CCGGCGTAGTG--CCCGCCCGCCCGCT-CGTTTCGTCGGTTGG--CTTAGGC
* * * * ** * ** * * * * * **
5346567 ATATGAAGATATGCATAAACCCA-CCTACCACCCTATC-GATCC-ACAGCTTGC-GCATCCCG-T
731 ATACGGAG-T-T-CAT--TCCCAGTCTAAGATCGAACCAGA-CCGA-GGGTTACAGCAGCAAGAT
** *** * * * * ** * **** *
5346627 C--TCTCTGGCTGAGGTAGTGCCCGCCCG--CCT--GCCAACCCA-CTCGTTTCGTCGGTTGGCT
789 CAGTAGCACACAGAGGGAG-ACCCGACCGATCCTCGGCTTACGCATC-CCACCCCTC---TGGC-
* * * * * * ** *
5346685 TAGGCATATGGAGTTCATTCCCATTCTAAGATCAGACTAGACTGAGCGTTGCAGCAGTAGG-AT-
848 -CGGC---T-GAG---A-GCCC--GC-ACGCTC-G-TTTCA-T-AG-GTTG-A-C-TTAGGCATA
* ** ** *
5346748 CGACAG--CATGCAGAGGTGGACCCGACCGATC
893 CGA-AGTTCATTCCCA-GT----CTAAGC-A-C
* * * * ** * * * * *
5346779 CCCG-GCTTCCGCA-TCCCACCCCTCT-GGCCGACTGA--ACA-CCCACACGCTCATTTCATGGG
1 ACAGAG-TT---CATTCCCA---GTCTAAGCATACGGAGTTCATTCC-CA-G-TC---T-A-AGA
* * * * * * * * * ***
5346838 TTGACTTAGGCATACG-GAGTT-C-ATTCCCAGTCTA-A-GATCGGAC-CGGATCAAGGGTTACA
51 TCGAC--CGG-A-CCGAGGGTTGCGA----CAG-C-ACATGCT-GGGCTC-GAGCATGTGTTGGT
* ** * * *** * * * * * *
5346897 GCAGCA-CATGCTAGGC-TC-GGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCG
104 GCTGCATTTTTCT--TCATCGGGGCA--CCATCGT--CGGA----GCATCACCGGAGAACC-T-G
* * * * * * ** * * * *
5346959 -TCGG-AGCATCATCGGATAACCTGACCG-GCGGCATTAGGGTTCCG-GCGATGGGGGGC-C-GA
157 ACCGGCGGCAT--TGGGGT-TCC-GA-CGATCGG-----GGGGGCCGAGCGGT-GTGCGCACATA
** * * * * * **
5347018 GGGGGTG-TGTGTGCACATGATGTGCGATGGGTGC-TAGTACTTGGCCCTTATATTAGCCCCTTA
211 ATGTGCGATGGGTG--C-TG--GTAC--TTGGCCCTTA-TA-TTGG--C---------CCCC-TA
* * * *
5347081 TACCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTG
255 TCCCTCATCAAACCTTGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
5347146 GCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTATCAAATGGTCACAAAATCTTGTACA-
320 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
5347210 TTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CAAG
385 TTT-GA-TTTTTTGATGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * * * * *
5347274 TTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAATTCTTAAACCGCAAAATG-TTTCATAAA
448 TTTGGGG-CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGA-AAA
* * **
5347338 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAATTTCGTGTGAAGGCTTAAGGGACCATTG
511 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*** *
5347403 TATGAATTTACAAGCCATAAAAATGGC-ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCA
576 TATGAATTTACAAGCCATAAAAAT--CAATTGGCACACAAAAATATGAAGATGTGCCTAAACCCA
* * * * * *
5347467 CCTACCACCCTACCGAGCTACGGCTTGCGCATCGCATCTCTCTGGCCGGCGCAGTGCCCGCCTGC
639 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-G-
* *
5347532 CCGCCAGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATC-A
699 -C-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA
* * * * * * * * ** * * * *** *
5347596 GACCCGATCAAGTGTTGCAGCACCAGGATCGGTAGCATGCAAAGGGGGACTCGGTAGATCCCCGG
761 -ACCAGACCGAGGGTTACAGCAGCAAGATCAGTAGCACACAGAGGGAGACCCGACCGATCCTCGG
* * * * * *
5347661 CTTGCGTATCACA-CCCTCTGGCCGGCTGAGCA-CCCGTACGCTCGTTTCGTGGGTTGACTTAGG
825 CTTACGCATCCCACCCCTCTGGCCGGCTGAG-AGCCCGCACGCTCGTTTCATAGGTTGACTTAGG
* *
5347724 CATACGGAGTTCATTCCCAGTCTAAGCAT
889 CATACGAAGTTCATTCCCAGTCTAAGCAC
*
5347753 ACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A---CC-G-----GATCGA---G--C----
1 ACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGG
* * * * * **
5347793 GTTGCGGCAGCACATACTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTTGTCGGGGCACCA
66 GTTGCGACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCTGCATTTTTCTTCATCGGGGCACCA
* * ** * * *
5347858 TCGCCGGTGCATCGTCGGAGAACCTGACCGGAGGTATT-GGGTTCCGACGATAGAGGGGGGCCGA
131 TCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGGCCGA
* * *
5347922 GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
195 --GCGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
5347987 CTCATCAAACCTTGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTA
258 CTCATCAAACCTTGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
5348052 GTAGCCATTAAAGTGCCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATC
323 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
* * * *
5348117 GAGTTTTTAGTTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTG
388 GA-TTTTTTGATGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * * ** *
5348182 GGGCCAAAACTCCTTCTGAAAAATTTTTCAAAAATCCCGAACCGCAAAAAGTTTCAAAAAATCTT
452 GGG-CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTT-TGAAAATCAT
5348247 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
515 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
5348312 AATTTACAAGGCATAAAAATGGC-ATTGGCACACAGAAATATGAAGATGTGCCTAAACTCACCTA
580 AATTTACAAGCCATAAAAAT--CAATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTA
* * *
5348376 CCACCCTATCGATCCACGCCTTGCGCATCCCGTCTTTCTGGCCGACGTAGTGCCCGCCCACCCGC
643 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCCG-
* * * * *
5348441 CCGCTCGCTCGTTTCGTAGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGA-CCAGATC
703 -C-C-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACC
*** * * * * * * * *
5348505 AGACCGAGGGTTGTGGCAGTAGGATCAGCAGCACGCAGAGGGGGACCCGGCCGATCCTTGGCTTG
764 AGACCGAGGGTTACAGCAGCAAGATCAGTAGCACACAGAGGGAGACCCGACCGATCCTCGGCTTA
*** * * * * *
5348570 CGCATCCTGTCCCTCTAGACGGCTGAGCA-CCCGCACGCTTGTTTCGT-GCATTGACTTAGGCAT
829 CGCATCCCACCCCTCTGGCCGGCTGAG-AGCCCGCACGCTCGTTTCATAG-GTTGACTTAGGCAT
* *
5348633 ACGGAGTTCATTCCCAGTCTAAGCAT
892 ACGAAGTTCATTCCCAGTCTAAGCAC
* *
5348659 ACAAAGTTCATTCTCAGTCTAAG-AT-C-G-G---A----C---CT--GAT---------CGAGG
1 ACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGG
* * *
5348699 GTTGCGGCAGCACATACTGGGCTC-AGGCATGTGTTGGTG-TCGCATTTTTCTTCGTCGGGGCAC
66 GTTGCGACAGCACATGCTGGGCTCGA-GCATGTGTTGGTGCT-GCATTTTTCTTCATCGGGGCAC
* * * ** * * *
5348762 AATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATAGAGGGGACCG
129 CATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG
* * * *
5348827 AGGGGGGAGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATC
194 A--GCGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
5348892 ACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTC
257 CCTCATCAAACCTTGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
5348957 AGTAGGCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTTCGCAAAATCTTGTACACT
322 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG-TCACAAAATCTTGTACACT
* * * * *
5349022 TCGAGTTTTTAGCTGAA-TTTTGTTGTGCGTGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
386 TTGA-TTTTTTGATGAAGTTTT-TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * ** **
5349086 TTGGGCCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATC
449 TTGGG-GCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATC
* *
5349151 GTGAAAAATAGAAAA-GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTA
513 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
5349215 TGAATTTACAAGGCATAAAAATGGC-ATTGGCACACAGAAATATGAAGATGTGCCTAAACTCACC
578 TGAATTTACAAGCCATAAAAAT--CAATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACC
*
5349279 TACCACCCTATCAATCCACGGCTTGCGCAT-CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCC
641 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCC
* * * * *
5349343 GCCCACCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATTGGAC
702 G----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAAC
* ** * * * * * * * * **
5349408 CGGATTGAGGGTT-CCGATAGTAGGATCCGTAGGACGCAGAAGGG-GACCCGACCGATCCCCGAT
763 CAGACCGAGGGTTACAG-CAGCAAGATCAGTAGCACACAG-AGGGAGACCCGACCGATCCTCGGC
* * * *
5349471 TTGCTCATCCCGA-CCCTCTGGCCGACCGAGCA-CCCGCACGCTCGTTTC-------G---T--G
826 TTACGCATCCC-ACCCCTCTGGCCGGCTGAG-AGCCCGCACGCTCGTTTCATAGGTTGACTTAGG
* *
5349522 -----G--GTTCA----C--T-TAGGCAT
889 CATACGAAGTTCATTCCCAGTCTAAGCAC
* *
5349537 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAG
1 ACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAG
** * * *
5349602 GGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACC
65 GGTTGCGACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCTGCATTTTTCTTCATCGGGGCACC
* ** * * * * * *
5349667 AACACCGGAGCATCACCGTTA-AACCTGACCGGCGACGTTTGGGTTCCGACGATCGGGGGGTCGG
130 ATCGTCGGAGCATCACCG-GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG
* * * * * * *
5349731 GGTGGTGTGTGCACATGATGTGTGATGGGTGCTGATACTTGGCCCTTCTATTGGCCCCCTATCCC
194 AGCGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * * * * *
5349796 TCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTCAGATTTTACGGGGTTGCTGCCAG
259 TCATCAAACCTTGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
5349861 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
324 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
* * * *
5349926 AGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTGG
389 A-TTTTTTGATGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * * ** *
5349990 GGCCAAAACTCATTTCGAAAAAAATTAAAAAAATGCTGAACCGTAAAAAGTTTCAAAAATCGTGA
453 GG-CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGA
* * * * *
5350055 AAAATAGAAAATGAGTCGTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATAGTACGAT
517 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
5350120 TTTACAAGCCATAAAAATGGC-ATTGGCGCACAGAAATATGAAGATGTGCCTAAACCCACCTACC
582 TTTACAAGCCATAAAAAT--CAATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * *
5350184 ACCCTATTGATCCACAGTTTGCGCATCCAGTCTCTCTGGCCGGTGTAGTGCTCGCCCGCCCACCT
645 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CC-
* *
5350249 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGGT-TAGACCAGACCG
706 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCG
* * * * * ** * * **
5350313 AGGGTTGCAGTAGGAGGATCAGCAGCACGTAGAAGGG-GACCCGACCGATCCCCCGCTTGTGCAT
770 AGGGTTACAGCAGCAAGATCAGTAGCACACAG-AGGGAGACCCGACCGATCCTCGGCTTACGCAT
* * *
5350377 CCCGCCCCTCTGGCCGGCTGAGCA-CCCGCACGATCATTTC----G-TG-CTT-----T---AA-
834 CCCACCCCTCTGGCCGGCTGAG-AGCCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGAAG
*
5350426 --C-TT---AG----A-CAT
898 TTCATTCCCAGTCTAAGCAC
* * * **
5350435 GCGGAGTTCATTCCCAGTCTAAGGATACGGAGTTCATTCCCAGTCTAAGATCAGACTTGACCGAG
1 ACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAG
* * * * * * *
5350500 TGTTACGACAGCATATCCTGGGCTCGAGCATGTGTTGATGCCGCATTTTTCTTCGTCGGGGCACC
65 GGTTGCGACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCTGCATTTTTCTTCATCGGGGCACC
* * * * * * * **
5350565 ATC-ACTGGAGCATCGCCGAAGAACCTGATCGACGGCATTGGGGTTCAGGCGATCGAAGGGGCCA
130 ATCGTC-GGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-
* * * * * *
5350629 GGGGGGTGTGCCCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCC
193 GAGCGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * * * * *
5350694 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTCAGATTTTACGGGGTTGCTGCCA
258 CTCATCAAACCTTGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
5350759 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAACATCTTGTACACTTC
323 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
* * * * * * *
5350824 GAGTTTTTAACTGAATTTTTTTGTGCATGCCAAAAAAAATACAATGATCATGTCTTCCAAGTTTG
388 GATTTTTTGA-TGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * ** * *
5350889 GGGCCAAAACCCCTTTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGTG
452 GGG-CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATG
* *
5350954 AAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
516 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
5351019 ATTTACAAGCCATAAAAATGGC-ATTGGCACACAGAAATATGAAGATGTGCCTAAACCAACCTAC
581 ATTTACAAGCCATAAAAAT--CAATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTAC
* * ** *
5351083 CACCCTACCGATCCACGGCTTGCGCATCCAGTCTCTCTGGCCGATGTAGTGCACGCCTGCCCGTC
644 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCC
* ** * ** ***
5351148 CGCTCGTTTCATTAGTTGGCTTAGACATACGGAGTTCATTTTCAGTCTAAGATCAGATTGA-ACC
705 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGACC
** * ** * * **
5351212 GAGGGTTGTAGCAGCAAGATCAGCAGCACGTAGAGGTG-GACCCGACCGATCCCCTGCTTGTGCA
769 GAGGGTTACAGCAGCAAGATCAGTAGCACACAGAGG-GAGACCCGACCGATCCTCGGCTTACGCA
* *
5351276 TCCCGCCCCTCTGGCCGGCTGAGCA-CCCGCACGCTCGTTT--T--G-TG-C----G--T-TG-A
833 TCCCACCCCTCTGGCCGGCTGAG-AGCCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGAA
*
5351326 ---C-TT---AG-----GCAT
897 GTTCATTCCCAGTCTAAGCAC
* * * * **
5351335 ACAGAGTTCATTCCCAGTCTAAGTATAAGAAGTTCATTCCCAATCTAAGATCGGACTAGACCGAG
1 ACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAG
* * * *
5351400 GGTTACGACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACC
65 GGTTGCGACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCTGCATTTTTCTTCATCGGGGCACC
* * *
5351465 A---TC---G--T---CGGAGAACCTGACCGACGGCATTGGGGTTCTGATGATCGAAGGGGCAGG
130 ATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG--GGGG--GG
** * *
5351519 GTG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
191 CCGAGCGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* ** * * * *
5351583 CGCTCATCAAATGTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTAC
256 CCCTCATCAAACCTTGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
5351648 CAGTAGGCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACT
321 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
** * * * * * * *
5351713 TCAAGTTTCTAGCTAAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAGGTT
386 TTGA-TTTTTTGATGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
** * * * ** * ** *
5351778 TCCGGCTAAAAATCCTTTCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCCAAAATCG
450 TGGGGC-AAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCA
* * *
5351843 GGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTAT
514 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * *
5351908 GAATTTACAAGCCATAAAAATGGC-ATTGGCACATAGAAATATGAAGATGTGGCTAAACGCACCT
579 GAATTTACAAGCCATAAAAAT--CAATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCT
* * *
5351972 ACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTTTCTGGCCGACGTAGTGCCCGCCCGCCCG
642 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * * * *
5352037 TCCACTCATTTCGTTGGTTGGCATAGGCATACGGAGTTCATTCCCAGTTTAAGATCGGACCGGAC
707 ----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGAC
* * * * * * * * **
5352102 CGAGGGTTGC-GATAGCAGGATCGGTAGCACACAGAGGGGGACCC-ACCGATCCCCGACTTGCAT
768 CGAGGGTTACAG-CAGCAAGATCAGTAGCACACAGAGGGAGACCCGACCGATCCTCGGCTTACGC
** * * * *
5352165 ATCCTGCCCCTCTGGCCGGCTGAGCA-CTCGCACGCTCGTTTCATGGGTCGACTTAGGCATACGG
832 ATCCCACCCCTCTGGCCGGCTGAG-AGCCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGA
*
5352229 AGTTCATTCCCAGTCTAAGCAT
896 AGTTCATTCCCAGTCTAAGCAC
* *
5352251 ACGGAGTTCATTCCCAATCTAAG-AT-C--AG---A----C---C--AGAT---------CGAGG
1 ACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGG
** * * * *
5352291 GTTGCGGTAGCACATGCTGGGCTCG-GGATGTGCTGGTG-TCGCATTTTTCTTCGTTGGGGCACC
66 GTTGCGACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCT-GCATTTTTCTTCATCGGGGCACC
** * ** * *
5352354 ATCACCGGGGCATCACCGGAGAACCTGATAGGCGGCATTGGGGTTCTGACGATCGGGGGGGCCGG
130 ATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGA
* * *
5352419 GGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
195 GCGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
** * *
5352484 CATCAAACCTCAAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
260 CATCAAACCTTGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * *
5352549 AGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGA
325 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
* * *
5352614 GTTTTTAGCTGAA-TTTTTTGGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
390 -TTTTTTGATGAAGTTTTTT-GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * **
5352678 GGCCAAAACTCCTTTCGAAAAATTTTTAAAAAAT-ATCGAACTGTAAAAAGTTTCAAAAATCATG
453 GG-CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTTGAAAATCATG
* * *
5352742 AAAAATATAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGCATGA
516 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * ** *
5352807 ATTTACAAGCCATAAAAA-CGGCACTGGCAC-CTAGGAATATGAAGATGT-CTTTAAACCCACCT
581 ATTTACAAGCCATAAAAATC--AATTGGCACAC-AAAAATATGAAGATGTGC-CTAAACCCACCT
* * * * **
5352869 ACCACCCTATTGATCCACGGCTTGCACATCCTGTCTCTCTAGCCGATGTAGTGCCCGCCCGCCTG
642 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CC-G
* *
5352934 CCCGGCCGCTCGTTTCGTCGGTTGCCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGAACC
703 --C--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACC
* ** ** * * * * * ** * * *
5352999 -GAACCAAGGGTTGTAATAGTAGGATCGGCAGGACATGGAGGGGGACCCGACTGATCCCCGGCTT
764 AG-ACCGAGGGTTACAGCAGCAAGATCAGTAGCACACAGAGGGAGACCCGACCGATCCTCGGCTT
* * * * *
5353063 ACGCATCCCGCCCCTCTGGCCGGCTAAGCA-CCCGTACGCTCGTTTCGTGGGTTGAC-T-----T
828 ACGCATCCCACCCCTCTGGCCGGCTGAG-AGCCCGCACGCTCGTTTCATAGGTTGACTTAGGCAT
5353121 A-G--G--------CA---T--G---
892 ACGAAGTTCATTCCCAGTCTAAGCAC
* * * * * *
5353128 -CAGAGTACATTCCCAGTCTAAACATACGGAGTTCATTCCCAATCTAGGATTGGACCGGCCCGAG
1 ACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCGACCGGACCGAG
* * * * * * *
5353192 AGTTGTGGCAGCACATGTTGGGCTTGGGCATGTGTTGGTG-TCACATTTTTCTTCATCGGGGCAC
65 GGTTGCGACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCT-GCATTTTTCTTCATCGGGGCAC
** ** * * * * * *
5353256 CATCACCGGAGCATCGTCGGAGAACCTGATCGACGGCATTGGGGTT-CGGCGATCGAGAGGGTCG
129 CATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG
* * * * * *
5353320 GGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCTATCCC
194 AGCGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
5353385 TCATCAAACCTTGAGAACTCACACCCCCTAAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAG
259 TCATCAAACCTTGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
5353450 TAGCCATTAAGGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
324 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
* * * * * *
5353515 AGTTTTTAGCTGAATTTTTTTGTGCATGTCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGG
389 A-TTTTTTGATGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * **
5353580 GGCCAAAACTCCGTCTGAAAAAATTTAAAAAAATCCCGAACC-TCAAAAAGTTTCAAAAATCATG
453 GG-CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGT-AAAAAGTTTTGAAAATCATG
*
5353644 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGA
516 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
** * *
5353709 ATTTACAAGCCATAAAAATGGC-ATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTAC
581 ATTTACAAGCCATAAAAAT--CAATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTAC
* *
5353773 CACCCTATCGATCCACGGCTTGTGCATCCCGTCCCTCTGGCCGGCGTAGTGCCCGCCAGCCCGCC
644 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT--------GCCCGCC
* * *
5353838 CGCTCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTTATTACCAGTCTAAGATC-AG
701 CG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-
* * * * * * * *
5353902 ACCGGACCAAGGGTTGCGGCAGCAGGATC-GACAGCACGCAGATGGG-GACCCGACCGATCCCCG
761 ACCAGACCGAGGGTTACAGCAGCAAGATCAG-TAGCACACAGA-GGGAGACCCGACCGATCCTCG
* * * * * *
5353965 GCTTACGCATCCCGCCCCTTTGGTCGACTGAGCA-CCCGCACGCTCGTTTCGTGGGTTGACTTAG
824 GCTTACGCATCCCACCCCTCTGGCCGGCTGAG-AGCCCGCACGCTCGTTTCATAGGTTGACTTAG
* * *
5354029 GCTTACGGAGTTCATTCCCCGTCTAAG
888 GCATACGAAGTTCATTCCCAGTCTAAG
5354056 ATCAGACCGG
Statistics
Matches: 8026, Mismatches: 1419, Indels: 1323
0.75 0.13 0.12
Matches are distributed among these distances:
876 18 0.00
877 2 0.00
878 27 0.00
879 3 0.00
880 4 0.00
881 2 0.00
882 2 0.00
883 1 0.00
885 8 0.00
887 10 0.00
888 2 0.00
889 69 0.01
890 85 0.01
891 529 0.07
892 12 0.00
893 4 0.00
894 7 0.00
895 3 0.00
896 14 0.00
897 448 0.06
898 316 0.04
899 244 0.03
900 615 0.08
901 299 0.04
902 739 0.09
903 266 0.03
904 331 0.04
905 433 0.05
906 543 0.07
907 145 0.02
908 5 0.00
909 1 0.00
910 5 0.00
911 2 0.00
912 4 0.00
913 2 0.00
915 7 0.00
916 31 0.00
917 3 0.00
918 351 0.04
919 7 0.00
920 192 0.02
921 357 0.04
922 293 0.04
923 185 0.02
924 16 0.00
925 3 0.00
926 6 0.00
927 184 0.02
928 2 0.00
929 2 0.00
930 2 0.00
931 2 0.00
932 2 0.00
933 12 0.00
934 20 0.00
935 15 0.00
936 5 0.00
937 8 0.00
938 8 0.00
940 3 0.00
941 2 0.00
942 3 0.00
943 1 0.00
944 7 0.00
945 2 0.00
946 11 0.00
947 12 0.00
948 10 0.00
949 18 0.00
950 12 0.00
951 36 0.00
952 3 0.00
953 13 0.00
954 21 0.00
955 23 0.00
956 15 0.00
957 17 0.00
958 20 0.00
959 85 0.01
960 20 0.00
961 5 0.00
962 8 0.00
963 15 0.00
964 24 0.00
965 28 0.00
966 39 0.00
967 17 0.00
968 13 0.00
969 13 0.00
970 17 0.00
971 29 0.00
972 29 0.00
973 10 0.00
974 18 0.00
975 11 0.00
976 16 0.00
977 14 0.00
978 29 0.00
979 33 0.00
980 25 0.00
981 32 0.00
982 16 0.00
983 16 0.00
984 29 0.00
985 16 0.00
986 17 0.00
987 24 0.00
988 10 0.00
989 7 0.00
990 10 0.00
991 10 0.00
992 19 0.00
993 20 0.00
994 15 0.00
995 7 0.00
996 12 0.00
997 15 0.00
998 3 0.00
999 14 0.00
1000 22 0.00
1001 13 0.00
1002 18 0.00
1003 15 0.00
1004 10 0.00
1005 5 0.00
1006 2 0.00
1008 1 0.00
1009 3 0.00
1010 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (917 bp):
ACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGG
GTTGCGACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCTGCATTTTTCTTCATCGGGGCACCA
TCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAG
CGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTTGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAT
TTTTTGATGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
AAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAA
TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATCAATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCG
TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACAGC
AGCAAGATCAGTAGCACACAGAGGGAGACCCGACCGATCCTCGGCTTACGCATCCCACCCCTCTG
GCCGGCTGAGAGCCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGAAGTTCATTCCCAGTC
TAAGCAC
Found at i:5344874 original size:26 final size:26
Alignment explanation
Indices: 5344837--5344915 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
5344827 GTTGACTTAG
* *
5344837 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTGATTCCCAGTCTAA
* *
5344863 GCATGCGGAGTTGATTCCCAGTCTGA
1 GCATACGGAGTTGATTCCCAGTCTAA
5344889 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTGATTCCCAGTCTAA
5344915 G
1 G
5344916 ATTGGACCGA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTGATTCCCAGTCTAA
Found at i:5346006 original size:25 final size:26
Alignment explanation
Indices: 5345955--5346006 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5345945 GTTAACTTAG
5345955 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
5345981 GCATATGGAGTTGATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5346006 G
1 G
5346007 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5347752 original size:26 final size:26
Alignment explanation
Indices: 5347723--5347775 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5347713 GTTGACTTAG
5347723 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5347749 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5347775 G
1 G
5347776 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5349569 original size:26 final size:26
Alignment explanation
Indices: 5349533--5349585 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5349523 GTTCACTTAG
5349533 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5349559 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5349585 G
1 G
5349586 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5352251 original size:26 final size:26
Alignment explanation
Indices: 5352221--5352273 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5352211 GTCGACTTAG
*
5352221 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5352247 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5352273 G
1 G
5352274 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5353490 original size:902 final size:904
Alignment explanation
Indices: 5345657--5371065 Score: 18209
Period size: 902 Copynumber: 28.2 Consensus size: 904
5345647 CGGCAGCAGG
**
5345657 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
1 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * * *
5345722 CAGTTTGCGCATTCTGTCTCTCTAGCCGGCGTAGT----GCCCGCCCGCCCGCCCGCTTGTTTCG
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
* * * * * *
5345783 TCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCGGACC-AGACTGAGGGTCGCGG
131 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGA-ACCGAGGGTTGCAG
* ** * * *
5345847 CAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCTGCTTTCGCATCCTGCCCCTCT
195 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * *
5345912 GGCCAGCTGAGCACCCGCACGCTCGGTTCGTAGGTTAACTTAGGCATACGGAGTTCATTCCCAGT
260 GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * * *
5345977 CTAAGCATATGGAGTTGATT-CCAGTCTAAGATCAGATCGGACCGAAGGTTGCGGTAGCACATGC
325 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
*
5346041 TGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT---C---G--T---CG
390 TGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCG
* * ** *
5346095 GAGAACCTGACC-CCTGGCATTGGGGTTCGGGTGATCGGGGGGGCC-GGGGGGTGTGCGCACATG
455 GAGAACCTGACCGAC-GGCATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGGTGTGCGCACATG
* * *
5346158 ATGTGCGATGGGTGCTGGGACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTTGAGAA
519 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
5346223 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCT
584 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
5346288 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTT
649 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
** *
5346353 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAAAAAGTTTGGGGCTAAAACT-CTTTCT
714 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-
* * * * *
5346417 AAAAAAATTTGAAAAAATACCCGAACCACAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAG
778 GAAAAAATTTTAAAAAAT-CCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* * *
5346482 TCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATA
842 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
5346545 AAAATGGCATTGGCACATAGAAATATGAAGATATGCATAAACCCACCTACCACCCTATCGATCCA
1 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * ** *
5346610 CAGCTTGCGCATCCCGTCTCTCTGGCTGAGGTAGTGCCCGCCCGCCTGCCAACCCACTCGTTTCG
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
* * * * *
5346675 TCGGTTGGCTTAGGCATATGGAGTTCATTCCCATTCTAAGATC-AGA-CTAGACTGAGCGTTGCA
131 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGA-ACCGAGGGTTGCA
* * * * * *
5346738 GCAGTAGGATCGACAGCATGCAGAGGTGGACCCGACCGATCCCCGGCTTCCGCATCCCACCCCTC
194 GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * * *
5346803 TGGCCGACTGAACACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
259 TGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* *
5346868 TCTAAG-AT-C-G-G---A---CC-G-----GAT-----C--A---AGGGTTACAGCAGCACATG
324 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATG
* ** ** **
5346907 CTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATC
389 CTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCC
* * * * *
5346972 GGATAACCTGACCGGCGGCATTAGGGTTCCGGCGAT-G-GGGGGCCGAGGGGGTGTGTGTGCACA
454 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCC-AGGGGG-GTGTGCGCACA
* * * *
5347035 TGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTAGCCCCTTATACCTCATCAAACCTCGAG
517 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
5347100 AACTCACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGT
582 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
5347165 CTGAAATGGGGACACTTTTATCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAAT
647 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* *
5347230 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CAAGTTTGGGGCCAAAAATCCTTT
712 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT
* *** * *
5347294 CGAAAAAATTTTAAAAATTCTTAAACCGCAAAATGTTTCATAAATCGTGAAAAATAGAAAACGAG
777 CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* **
5347359 TCGTCTTGCCATGAAATTTCGTGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
842 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*** * * *
5347422 AAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGAGCTA
1 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * * *
5347487 CGGCTTGCGCATCGCATCTCTCTGGCCGGCGCAGTGCCCGCCTGCCCGCCAGCCCGCTCGTTTCA
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
* * * * *
5347552 TCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCCG-ATCAAGTGTTGCAG
131 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGAACCGAGGGTTGCAG
* * * * * *** * * *
5347616 CACCAGGATCGGTAGCATGCAAAGGGGGACTCGGTAGATCCCCGGCTTGCGTATCAC-ACCCTCT
195 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
*
5347680 GGCCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
260 GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * *
5347745 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGCGTTGCGGCAGCACATAC
325 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
* * * * *
5347810 TGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTTGTCGGGGCACCATCGCCGGTGCATCGTCG
390 TGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCG
* *
5347875 GAGAACCTGACCGGA-GGTATT-GGGTTCCGACGATAGAGGGGGGCCGAGGGGGGTGTGCGCACA
455 GAGAACCTGACC-GACGGCATTGGGGTTCCGACGATCGA-GGGGGCC-AGGGGGGTGTGCGCACA
* *
5347938 TGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAG
517 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * *
5348003 AACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGC
582 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
5348068 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGTTGAAT
647 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
*
5348133 TTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TT
712 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT
* * *
5348197 CTGAAAAATTTTTCAAAAATCCCGAACCGCAAAAAGTTTCAAAAAATCTTGAAAAATAGAAAACG
777 C-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC-AAAAATCGTGAAAAATAGAAAACG
*
5348262 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATA
840 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
5348327 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCA
1 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * *
5348392 CGCCTTGCGCATCCCGTCTTTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCTCGCTCGTTTCG
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
* * * * * * **
5348457 TAGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGACCAGATCAG-ACCGAGGGTTGTGG
131 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGAACCGAGGGTTGCAG
* * * ** * *
5348521 CAGTAGGATCAGCAGCACGCAGAGGGGGACCCGGCCGATCCTTGGCTTGCGCATCCTGTCCCTCT
195 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * **
5348586 AGACGGCTGAGCACCCGCACGCTTGTTTCGTGCATTGACTTAGGCATACGGAGTTCATTCCCAGT
260 GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
** * * * *
5348651 CTAAGCATACAAAGTTCATTCTCAGTCTAAGATCGGACCTGATCGAGGGTTGCGGCAGCACATAC
325 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
* * * **
5348716 TGGGCTCAGGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGCACAATCGTCGGAGCATCGCCG
390 TGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCG
** * * *
5348781 GAGAACCTGACCGACGGCATTGGGGTTCCGGTGATAGAGGGGACCGAGGGGGGAGTGCGCACATG
455 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCC-AGGGGGGTGTGCGCACATG
* *
5348846 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCACTCATCAAACCTCGAGAA
519 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
5348911 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGGCATTAAAGTGTCT
584 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
5348976 AAAATGGGGACACTTTTTTCAAATGGTTCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
649 GAAATGGGGACACTTTTTTCAAATGG-TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
5349041 TTGTTGTGCGTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTCC
713 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
*
5349106 GAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA-GAGT
778 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* *
5349170 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGGCATA
843 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
5349232 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCAATCCA
1 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * *
5349297 CGGCTTGCGCAT-CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCACCCGTTCATTTCG
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
* * * * ** *
5349361 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATTGGACCGGATTGAGGGTT-CCGA
131 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCAG-
* * * * * * ** * *
5349425 TAGTAGGATCCGTAGGACGCAGAAGGGGACCCGACCGATCCCCGATTTGCTCATCCCGACCCTCT
195 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * *
5349490 GGCCGACCGAGCACCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGT
260 GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * *
5349555 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGTAGCACATGC
325 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
* *
5349620 TGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCAACACCGGAGCATCACCG
390 TGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCG
* * * * * * *
5349685 TTA-AACCTGACCGGCGACGTTTGGGTTCCGACGATCG-GGGGGTC-GGGGTGGTGTGTGCACAT
455 -GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCAGGGG-GGTGTGCGCACAT
* * *
5349747 GATGTGTGATGGGTGCTGATACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCGAGA
518 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * * *
5349812 ACTCACACCCCCTTAAAAAGCATTTCAGATTTTACGGGGTTGCTGCCAGTAGCCATTAAAGTGTC
583 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
5349877 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
648 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
5349942 TTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTGGGGCCAAAACTCATTTC
713 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
* * * * * *
5350006 GAAAAAAATTAAAAAAATGCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGT
778 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* * * *
5350071 CGTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATAGTACGATTTTACAAGCCATA
843 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
5350133 AAAATGGCATTGGCGCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCA
1 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * ** * * *
5350198 CAGTTTGCGCATCCAGTCTCTCTGGCCGGTGTAGT----GCTCGCCCGCCCACCTGCTCGTTTCG
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
* *
5350259 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGGT-TAGACC-AGACCGAGGGTTGCA
131 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGA-ACCGAGGGTTGCA
* * * * * * *
5350322 GTAGGAGGATCAGCAGCACGTAGAAGGGGACCCGACCGATCCCCCGCTTGTGCATCCCGCCCCTC
194 GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * ** * * *
5350387 TGGCCGGCTGAGCACCCGCACGATCATTTCGTGCTTTAACTTAGACATGCGGAGTTCATTCCCAG
259 TGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * ** * * * * *
5350452 TCTAAGGATACGGAGTTCATTCCCAGTCTAAGATCAGACTTGACCGAGTGTTACGACAGCATATC
324 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATG
* * *
5350517 CTGGGCTCGAGCATGTGTTGATGCCGCATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGCC
389 CTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCC
* * * * * *
5350582 GAAGAACCTGATCGACGGCATTGGGGTTCAGGCGATCGAAGGGGCCAGGGGGGTGTGCCCACATG
454 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGGTGTGCGCACATG
* *
5350647 ATGTGTGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
519 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * * *
5350712 CTCACACCCCCTTAAAAAGCATTTCAGATTTTACGGGGTTGCTGCCAGTAGCCATTAAAGTGTCT
584 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
5350777 GAAATGGGGACACTTTTTTCAAATGGTCACAACATCTTGTACACTTCGAGTTTTTAACTGAATTT
649 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *
5350842 TTTTGTGCATGCCAAAAAAAATACAATGATCATGTCTTCCAAGTTTGGGGCCAAAACCCCTTTCG
714 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* * * * *
5350907 AAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAATGAGTC
779 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
5350972 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
844 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
5351033 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTACCGATCCA
1 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * *
5351098 CGGCTTGCGCATCCAGTCTCTCTGGCCGATGTAGT----GCACGCCTGCCCGTCCGCTCGTTTCA
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
** * ** ** *
5351159 TTAGTTGGCTTAGACATACGGAGTTCATTTTCAGTCTAAGATC-AGATTGAACCGAGGGTTGTAG
131 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGAACCGAGGGTTGCAG
* * * * * *
5351223 CAGCAAGATCAGCAGCACGTAGAGGTGGACCCGACCGATCCCCTGCTTGTGCATCCCGCCCCTCT
195 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * *
5351288 GGCCGGCTGAGCACCCGCACGCTCGTTTTGTGCGTTGACTTAGGCATACAGAGTTCATTCCCAGT
260 GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * ** * *
5351353 CTAAGTATAAGAAGTTCATTCCCAATCTAAGATCGGACTAGACCGAGGGTTACGACAGCACATGC
325 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
* *
5351418 TGGGCTCGAGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT---C---G--T---CG
390 TGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCG
* * *
5351472 GAGAACCTGACCGACGGCATTGGGGTTCTGATGATCGAAGGGG-CAGGGTGGGGGTGTGCGCACA
455 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCA--G-GGGGGTGTGCGCACA
* **
5351536 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAATGTCGAG
517 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * *
5351601 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGGCATTAAAGTGT
582 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * *
5351666 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCAAGTTTCTAGCTAAAT
647 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * ** * *
5351731 TTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTCCGGCTAAAAATCCTTT
712 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT
* * * * *
5351796 CAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCCAAAATCGGGAAAAATAGAAAAGGAG
777 CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
*
5351861 TCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
842 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
5351924 AAAATGGCATTGGCACATAGAAATATGAAGATGTGGCTAAACGCACCTACCACCCTATCGATCCA
1 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * *
5351989 CGGCTTGTGCATCCCGTCTTTCTGGCCGACGTAGT----GCCCGCCCGCCCGTCCACTCATTTCG
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
* * * * *
5352050 TTGGTTGGCATAGGCATACGGAGTTCATTCCCAGTTTAAGATCGGACCGGACCGAGGGTTGC-GA
131 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCAG-
* * * * ** *
5352114 TAGCAGGATCGGTAGCACACAGAGGGGGACCC-ACCGATCCCCGACTTGCATATCCTGCCCCTCT
195 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * *
5352178 GGCCGGCTGAGCACTCGCACGCTCGTTTCATGGGTCGACTTAGGCATACGGAGTTCATTCCCAGT
260 GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * *
5352243 CTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCACATGC
325 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
* * * * *
5352308 TGGGCTCGGG-ATGTGCTGGTGTCGCATTTTTCTTCGTTGGGGCACCATCACCGGGGCATCACCG
390 TGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCG
** * * *
5352372 GAGAACCTGATAGGCGGCATTGGGGTTCTGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGA
455 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGGTGTGCGCACATGA
* * *
5352436 TGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAG
520 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
5352501 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
585 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
5352566 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTT
650 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
*
5352631 TTGGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
715 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
* ** * * * *
5352696 AAAATTTTTAAAAAATATCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATATAAAACGAGTCG
780 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
5352761 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATA
845 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * * *
5352821 AAAACGGCACTGGCAC-CTAGGAATATGAAGATGT-CTTTAAACCCACCTACCACCCTATTGATC
1 AAAATGGCATTGGCACAC-AGAAATATGAAGATGTGC-CTAAACCCACCTACCACCCTATCGATC
* * * * * *
5352884 CACGGCTTGCACATCCTGTCTCTCTAGCCGATGTAGTGCCCGCCCGCCTGCCCGGCCGCTCGTTT
64 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTT
* * * *
5352949 CGTCGGTTGCCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCAAGGGTTGTA
129 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCA
** * * *** * *
5353014 ATAGTAGGATCGGCAGGACATGGAGGGGGACCCGACTGATCCCCGGCTTACGCATCCCGCCCCTC
194 GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * * *
5353079 TGGCCGGCTAAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATGCAGAGTACATTCCCAG
259 TGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * * * *
5353144 TCTAAACATACGGAGTTCATTCCCAATCTAGGATTGGACCGGCCCGAGAGTTGTGGCAGCACATG
324 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATG
* * * * * *
5353209 TTGGGCTTGGGCATGTGTTGGTGTCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGTC
389 CTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCC
* * * * *
5353274 GGAGAACCTGATCGACGGCATTGGGGTT-CGGCGATCGAGAGGGTC-GGGGGGTGTGCACACATG
454 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGGTGTGCGCACATG
* * *
5353337 ATGTGCAATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTTGAGAA
519 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
5353402 CTCACACCCCCTAAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCT
584 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
5353467 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
649 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
5353532 TTTTGTGCATGTCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-GTCT
714 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-
* * *
5353596 GAAAAAATTTAAAAAAATCCCGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
778 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
*
5353661 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATA
843 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
** *
5353723 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCA
1 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * *
5353788 CGGCTTGTGCATCCCGTCCCTCTGGCCGGCGTAGTGCCCGCCAGCCCGCCCGCTCACCCGCTCGT
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG----CCCGCTCGT
* * * * *
5353853 TTCGTCGGTTGGCTTAGGCATATGGAGTTTATTACCAGTCTAAGATC-AGACCGGACCAAGGGTT
127 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGAACCGAGGGTT
* * * *
5353917 GCGGCAGCAGGATCGACAGCACGCAGATGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCC
191 GCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
* * *
5353982 CTTTGGTCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGAC-T-----T----AG--------
256 CTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * *
5354029 --G-CT-----TACGGAGTTCATTCCCCGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAG
321 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAC
* * * **
5354086 ATGCTGGGCTCGGGCATGTGTTGGTGTCGCATTTTTCTTCGCCTGGGCACCATCGTCGGAGCATC
386 ATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATC
* * * *
5354151 ACCGGAGAACCTGACCGACGGCATTGAGGTTCCGACGATTG-GGGGGCC-GGGGGGTGTGTGCAC
451 GCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGGTGTGCGCAC
5354214 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGA
516 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * * **
5354278 CAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAACAGCCATTAAAGTG
581 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
5354343 TCTGAAATGGGGACACATTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
646 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
*
5354408 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT--GGCCAAAACTCCTT
711 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * * *
5354471 CCAAAAAAATTTCAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGA
776 TCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* * *
5354536 GTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATCGTATGAATTGACAAGCCATA
841 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * *** *
5354600 AAAATGGCATTGGCACACAGAAACATGAAGATGTACCTAAACCCACCTACATGAAGATGTACCTA
1 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC---CA-CCCTA--TC
* * * * **
5354665 AATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTG---G-CCACCCGCCTGCCTACTC
60 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTC
* * * * * * *
5354726 GTTTCATCGGTTGTCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATC-AGACCAATGG
125 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGA-ACCGAGGG
* * * ** * * ** **** *
5354790 TTGCGGCAGCA-CATGCTTGGC-TCGGGCATGTGTTGGTG-CCATATTTTTCTTCACCGG--GGC
189 TTGCAGCAGCAGGAT-C--GGCAGCACGCA-GAG--GGGGACCCGACCGATC--C-CCGGCTTGC
* * * * * * *** * ****
5354850 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCAGACGATCGAGGGGGC
245 -GCATC-CC---GC-CCCTCTG-G--CC-GGCTGA--GCA--CCCG--C--ACGCTCG-TTTCG-
* ** * * * *** * ** ** * **
5354915 CGGGGGGAGTGT-GCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTTCT
290 TGGGTTGACT-TAG-G--CAT-ACG-GAGTTCATTCCCAGT-CTAAG--C--ATA-CGGAGTTC-
* * ** ** *** *** * * * **** *
5354979 ATCCCTCA-TCAAACCTCGAGAACTCACACC--CCCTTAAAG-AG--CAT-TTGAGATTTTACAG
342 ATTCC-CAGTCTAAGATCG-G-AC-CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * *** ** *** * * * **
5355037 GT-TTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT-GGGGACACTTTTTTC--A-AATGGTCACA
403 GTGTTGGTGCC----G-CATT----TTTCT-TCGTCGGGG-CACCATCACCGGAGCATCGCCGGA
* * * * *** * ** ***** * ** *
5355097 AAATCTTGTA-C-A---C-TTCGAGTTTTTA-GCT-GA--ATG-TTTTTGTGCATGC-CAACA-A
457 GAA-CCTG-ACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGGTGTGCGC-ACATG
**** * * * *** * **** * * **
5355149 AAAAAC-AAGGAT-C----ACATCTACC-AAGT-TTGGGGCCAAAAATCCTTTCGA-AAGAATTT
519 ATGTGCGATGGGTGCTGGTACTTGGCCCTTA-TATT--GGCCCCCTATCC-CTC-ATCA-AACCT
** * * * ** * * ** * * *** * *
5355205 TAAAAAATCCCAAACCGTAAAAGGTGTGGAAAATCATGAAAAATAGAAAACGAG-TCGTCTTGCC
578 CGAGAACTCACACCCCCTTAAA------GAGCAT-TTG--AGATTTTACA-G-GTTTG-C-TGCC
* * * * * * * *
5355269 ATGAAACTTCACGTCAAG-G-CT-TAAT--GGAC-CATTGTATGAATTTACAA--GCCATAAAAA
630 A-GTAGC--CA-TTAAAGTGTCTGAAATGGGGACAC-TT-T-T---TTCA-AATGGTCA-CAAAA
* * * * ** * *** *** * * ***
5355326 TGGCGTTG-GCA-TGCAGAAATATGAAGATG--TGGCTAAATGCACCTACCACCATATCGAT-CA
683 T--C-TTGTACACTTC-G-AGTTTTTAGCTGAATTTTTTTGTGCA--TGCCA--AAAAAAATACA
* ** * * ** ** * * * **** *****
5355386 ATGGCTTGCGTAT-CC-CGTCTCTCTGGCCGGTTGAGCGCC--T-GCACGCTTGTTTCATGGGTT
739 A-GGATCACGTCTACCAAGT-T-TGGGGCC---AAAACTCCTTTCGAAAAAAT-TTT-AAAAAAT
** ** * ** * * *** * ** *
5355446 GACTTA-GGCATACGGAG-TTC---ATTCCT--AGTCTAAGCATATGGAGT--TCATTCCCAGTC
796 CCCGAACCGCA-A-AAAGTTTCAAAAATCGTGAAAAAT-AG-AAAACGAGTCGTC-TTGCCA-T-
* * ** ** * * * * **** *
5355502 TAAGAATGGACCAGACCGAGGGTTACGGCAGCACA-TGCTAGGTTGGGGCATGTGTTGGTGTCAT
854 GAA-ACTTCACGTGA---AGGCTTAAGGGA-C-CATTG-TA---T---GAAT-T-TACAAGCCAT
5355566 A
904 A
**** ** * ** * * * * * * ** * **
5355567 TTTTTCTTCATCGGGGCAC--CATTGTCGGAGCAT-CGCC-AGA-GAACCTGACTGACGATATTG
1 AAAAT-GGCATTGGCACACAGAAATAT-GAAG-ATGTGCCTAAACCCACCT-AC-CACCCTA-T-
* * * * ** * * * **** * * ** *** **
5355627 GGGTTCTGACGATCGGGGGGA-CCAGGGGGTGT-G-CGCACATGATGTGCGATGGGTGCTGGTAC
59 -CGATC-CACG-GCTTGCGCATCCCGTCTCTCTGGCCG-ACGT-A-GTGC-CCGCCCGCCCG--C
** * ** * * ** ** * * * * ** **
5355689 TTGGCC-CTTATATTGGCCCTCTATCCCTCA-TCAAACCTCAAGAACTCACACCC-G-CTTAAAG
115 CCGCCCGCTCGT-TTCG-TCGGT-TGGCTTAGGCATA---C-GGAGTTCATTCCCAGTC-T-AAG
* *** * * * * * *** * * * * * *
5355750 AGC-ATTTGAGATTTTAC-AGGTTTGCTGCCAGTAGCCAATAAACTG-TCTCAAATGGGG--TC-
171 ATCGAACCGA-A----CCGAGGGTTGCAG-CAGCAG--GATCGGCAGCACGCAGAGGGGGACCCG
** *** *** * **** ** * ***** * ** ** *
5355809 A-CTTTTTTC-AAATG-G--TCAC-AAAATCTTGTAC-ACTTCGAGTTTTTAGCTCAATATTTTT
228 ACCGATCCCCGGCTTGCGCATCCCGCCCCTC-TGGCCGGC-T-GAG-CACCCGCACGCTCGTTTC
** * ** *** * * * ** * ***** **
5355867 GT-GCATGCCAACAAAAATACAAGGA-TCACATCCACCAAGTTTGGGGCCAAAAATCCTTCCAAA
289 GTGGGTTGAC-TTAGGCATAC--GGAGT-TCATTC-CC-AGTCT-AAG-CATACGGAGTT-CATT
*** * * * * * ** ** ***** **
5355930 AAAATTTTAAAAAATC---CCGAACCGCGGAAAGTT-TTG-AAAATCATG-AAAAAT-GGAAAAT
345 CCCAGTCT--AAGATCGGACCGGACCGAGG---GTTGCGGCAGCA-CATGCTGGGCTCGG-GCAT
* *** * * *** * ** ** * **** *
5355988 GAGTCGTT-TTGCCATG-AAACTTC-ACGT-GAAGGCTTAATGGAATGTTGTAT-GAATTTACAA
403 --GT-GTTGGTGCC--GCATTTTTCTTCGTCG-GGGCACCAT-CACCGGAGCATCG-CCGGAGAA
*** * **** * * * * * * ******** * *
5356048 GCCAT-AAAAATGGCATTGGCAAGCAGA-AATATGAAGATGTGACTAAACCCACCTAC-CACCCT
460 -CC-TGACCGACGGCATTGGGGTTCCGACGAT-CG-AG--GGGGCCAGGGGGGTGTGCGCA-CAT
* * * * * * *** * ** **
5356110 -ATCGAT-CCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTT
518 GAT-G-TGCGATGG-GTG--C-T--GGT-ACT-TGGCC--CTTA-T-ATTGGCC-CCCTATC-CC
* *** * ** ** * * * * * *
5356173 TCGTCGGTTGGCCTAG-GCATACGGAGTTCATTCCCTGTCTAAGATCAGATCGA-A--CT-GAGG
567 TCATC---AAACCTCGAG-A-ACTCA---CACCCCCT-T-AAAGAGCA-TTTGAGATTTTACAGG
* * * * * ** * * * *** **
5356233 GTTG-TG-TAGCAG-GATCAACAG-AACAT-AGAGGGGGACCCAGTTGATCCCCGACTTGTGT-A
621 TTTGCTGCCAGTAGCCATTAA-AGTGTC-TGAAATGGGGA--CACTT--TTTTC-AAATG-GTCA
**** * * * * ** ** * **
5356292 TTCCTCCCCTCTGGCCGCTGAGCAC-CCGCACGCTCGTTTA-ATGGGTTGACTTTG-GCATACGG
678 ---C-AAAATCT---TG-T-A-CACTTCG-A-G-T-TTTTAGCTGAATT-TTTTTGTGCATGCCA
**** * * * * * * * ** * ***
5356354 AGTTCATTCCCCATCTAAGCAT-ATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
728 AAAAAAAT----A-C-AAGGATCA---CG-TC-TACCAAGT-T----TGGGGCCAAAAC--TCCT
* ** * ** ** * * ** ** **** *** * * **
5356418 TGTGGCAGCACATGCTGGGCTTAGGCATGTGCTG--GTGTGACTTTTTTC-TTCATCGGGGCACC
775 T-TCG-AAAAAAT--T----TTA-AAAAATCCCGAACCGCAAAAAGTTTCAAAAATC-GTGAAAA
* * * * * ** ** * ** *
5356480 AT---CACCGTAG-CATC--GTCA-GAGAACCTGTC-TGGCGGCATT-GGGGTTC--TG-ACG--
830 ATAGAAAACG-AGTCGTCTTGCCATGA-AACTTCACGTGAAGGC-TTAAGGGACCATTGTATGAA
*****
5356531 TTCGGGGGGGCC---
892 TT--TACAAGCCATA
***** ** * * ** ** * * * *** ** *
5356543 GGGGGGGTGTTCGCACA-TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCCTA
1 AAAATGGCATTGGCACACAGAAATATGA-AGATG-T-G-CCTAAACCC--A-CCT-ACCACCCTA
** ** * * * * **** * ** * ****
5356606 TCCCT-CATCAAACTT-CAAG-AACCCACTCCCCCTTAAAGAGCATTTGAGATTTTACAG-GTTT
58 TCGATCCA-C-GGCTTGC--GCATCCC-GTCTCTCTGGCCGA-C--GT-AG---TGCCCGCCCGC
* ** **** * ** *** * * * **** ** *
5356667 ACTACCAATAGC-CATTAAAGT--GTCTGAAATGGGGACACTTTTTTCAAATTGTCA--C-AAAA
111 CCGCCCGCCCGCTCGTT-TCGTCGGT-TGGCTTAGGCATACGGAGTTC--ATTCCCAGTCTAAGA
* * ** ** * *** * * * * ***
5356726 TCTTGAA-C--ACTTC-AAGTTTTTAGTTGAATTTTTTTGTGCATGCCAAGAAAAATATAAGGA-
172 TC--GAACCGAAC--CGAGGGTTGCAGCAGCA--GGATCG-GCA-G-CACG---CAGAGGGGGAC
* * * ** * * *** * * ****** * ** ** *
5356786 TC-A-CGTTTACCAAGTTTGGGGCCAAAAC-TCCTTCTGAAAAAATTTTAAAAAATCCCAAATTG
225 CCGACCG-ATCCCCGGCTT-GCG-CATCCCGCCCCTCTG---GCCGGCT-GAGCA-CCCGCA-CG
** ***** ** * * * * * *
5356848 CAAAAAGTTTCAAAAATCATGAAAAATA-GAAAAC-GAG-TCATCTTGCCA-T-GAAACTTCACG
281 C---TCGTTTCGTGGGT--TG--ACTTAGGCATACGGAGTTCA--TTCCCAGTCTAAGCAT-ACG
* *** * ** * ** *** * * * *
5356908 TGAAGGCTTAACGGACCATTGTATGAATTTAC-AAGCCATAAAAATGGCATTGGCACGTAG-AAA
336 -G-A-G-TTCA-TTCCCA--GTCT-AAGAT-CGGA-CCGGACCGA-GG-GTT-GC-GGCAGCACA
* * * * ******** * * ** * ** * * * * *
5356971 T-ATGAAGAT-GTGCCTAAACCCACCTACCACCTATCGATCCAACGGCTTGCGCATCCGTCTCTC
387 TGCTG-GGCTCG-GGC-ATGTGTTGGTGCC-GC-AT-TTTTCTTCGTC-GGGGCA-CCATCAC-C
* ** * ** * * * * *** * * * * **
5357034 TG-GC--CGGTGTAGTGCCCGCCTGTCCGTCCGCCCATCGCTCATTTCGTCGGTTG-GCTAGGCA
443 GGAGCATCGCCG--GAG--AACCTGACCG-ACG-GCATTG-GGGTTCCGACGATCGAG-GGGGC-
* * * * * * ** * * *
5357095 TACGGAGTTCATTCAAGTCTACGATCGGATCAGACTGA-GGGTTAC-GGCAGC-AGGATCGACAG
499 CAGGGGGGT-GTGC--G-C-AC-AT--GATGTG-C-GATGGG-TGCTGGTA-CTTGG--C--C--
**** ** *** * * *** * * *** *
5357157 CACGCAGAGGGGGACCCA-ACCT-ATCCAAGGGT-TATGATA-GCACATGCTGGGCTCAAGCATG
546 CTTATA-TTGGCCCCCTATCCCTCAT-CAAACCTCGA-GA-ACTCACA--C-CCCCTTAA--A-G
* * * * * * *
5357218 TGC-TGGTGCCGTATTTTTTTTCATCGG--GGC-ACCATCGTCGGAG-CATCGCTGGAGAACCTG
601 AGCAT-TTG-AG-A---TTTTACA--GGTTTGCTGCCA--GT---AGCCAT---T--A-AA-GTG
* * * * ***** **** * * **** * *
5357278 ACCGGTGGCATTGGGGTTC-CGGCGATCGGGGGGGC-CGAGGGGTGTGCACACAT-GA-TATGTG
646 -TC--T-GAAATGGGG-ACACTTTTTTCAAATGGTCACAAAATCT-TGTACACTTCGAGT-T-T-
* ** ** * *
5357339 GTGGGT-GCTGGAATTTGGCCCTTATAT-TGGCCCCCTATCACTCATCAAACCT-CGAGAACTCA
702 -T---TAGCT-GAATTT-----TT-T-TGT-G----C-AT-GC-CAAAAAAAATACAAGGA-T--
** * * ***** *** ** **** *** *
5357401 CACCCCCTTA-AAGAGCATTT-GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-CTG
744 CA-CGTC-TACCA-AG--TTTGGGGCCAAAACTCCTTT-C-G--AAAAAATTTTAAAAAATCCCG
** ** * ** *** * * * ** *
5357463 AAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT--T-TTG-C-TGAAG
800 -AACCGCAAAAAGTTTCAAAAATCGTGA-AAAA--TAG-A-A-AACGAGTCGTCTTGCCATGAAA
* *** ** * * * * * ** ***
5357523 TTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCC--A
858 CTTCACGTG-A-A--GGC----TTA-AGGGACCA-TTGTATGAA-TTTACAAGCCATA
* * * * * * ***** * ** * *
5357578 AAACT--CATT--CTA-A-AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATG
1 AAAATGGCATTGGC-ACACAGAAA-TAT-GAAGATGT-G--CC-T-AAACCCACCTACCACCCT-
* ** ** * * * * * **
5357637 AAAAATAGA-AAACGAGTCATCTTGC-CATGAAAC-T-TCACGTGAG--GGCTTAAGGGACC-AT
57 ----ATCGATCCACG-G----CTTGCGCAT--CCCGTCTCTC-TG-GCCGACGT-AGTGCCCGCC
* *** **** ** * **** ** * * * * * * **
5357695 TGTATGAATTTACAAGC-CATAAAAAT-GGCATTGGCATGTAGAAATATGAAGAT-GTGCCTAAA
108 CGCCCG--CCCGCCCGCTCGT-TTCGTCGG--TTGGC-T-TAGGCATACGGAGTTCATTCCCAGT
** ** * * * ** * *
5357757 CCCACCTACCACCCTAGATTGAGGGTT-CTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCG
166 CTAAGAT-CGAACCGA-ACCGAGGGTTGC-AGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
* * ** * * * *
5357821 ACCGATCCCCAGCTTACGCATCCCGCCCCTC-GTTCGACTGAGCGCCCGCACGCTCATTTCATGG
228 ACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGG
** *
5357885 GTTGACCGAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
293 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
** * * * *
5357950 CGGACTAGACCGAGGGCTGCAGCAGTACATGCTGGG-TCGGGCATGTGCTGGTGCCGCATTTTTC
358 CGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTC
* * * * *
5358014 TTCGTCGGGGCACCATCGCCGGAGCATCACCAGAGAACCTGACTTG--GGTATTGGGGTTCCGAC
423 TTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGAC-CGACGGCATTGGGGTTCCGAC
** * * **
5358077 GATC-AGGGAGATC-GAGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTAGTGCTTA
487 GATCGAGGG-GGCCAG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * * *
5358140 TATTGGCCCCCTATCCCTCAGCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTCGACATTT
550 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
5358205 TACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAATGGGGACACTTTTTTCAAATGGTCACA
615 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * *
5358270 AAATCTTGTACACCTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACGAGGATC
680 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
* * * * * * *
5358335 ACATCTACCAAGTTTAGGGCCAAAAATCTTTTCAAAAAAATTTAAAAAAATCCCAAACCGCAAAA
745 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAA
* * * * *
5358400 AGTTTCAAAAAACGTGAAAAATAGAAAACGAGTTGTCTTGCCATTAAGCTTCACGTGAAGCCTTA
810 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
*
5358465 AGGGACCATTGTATGAATTTACAAGCTATA
875 AGGGACCATTGTATGAATTTACAAGCCATA
* * *
5358495 AAAACGGCATTGGCACATAGAAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
1 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * *
5358560 CGGCTTGCGCATCTCGTCTCTCTGGCCG--GT-GT---AG--TG-CCG---GCCCGCTCGTTTCA
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
* * * * * **
5358613 TTGGTTGGCCTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC-AGACCAAGGGTTGTGG
131 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGA-ACCGAGGGTTGCAG
* * *
5358677 CAGCAGGATCGACAGCACGCAGAGGGGGACCCGACGGATCCCCGGCTTGTGCATCCCGCCCCTCT
195 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * *
5358742 GGCCGGCTGAGCACTCC-CTCGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTTATTCCTAG
260 GGCCGGCTGAGCAC-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * *
5358806 TCTAAGCATAAGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATG
324 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATG
**
5358871 CTGGGCTCGGGCATGTGTTGGTGCCGCA--TTT-TTC-T----------TCACCGGAGCATTACC
389 CTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCC
* * * * *
5358922 -GACGAACCTGACCGACGGCATTGGGTTTCTGGCGATTTG-GGGGGCC-GGGGGGTGTACGCACA
454 GGA-GAACCTGACCGACGGCATTGGGGTTCCGACGA-TCGAGGGGGCCAGGGGGGTGTGCGCACA
* * * ** *
5358984 TGTTCTGCGATGCGTGCTGGTACTTGGCCCTTATATT-GAACCCTAATCCCTCATCAAACCTTGA
517 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT-ATCCCTCATCAAACCTCGA
* * *
5359048 GAACTCGCACCTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTG
581 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
5359113 TCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAA
646 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
** *
5359178 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATTTCTAACAAGTTTGGGGCCAAAACTCC-T
711 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * **
5359242 TCTGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACG
776 TC-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
*
5359307 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCCATA
840 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * *
5359372 AAAATGGCATGGGCACGCAGCAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCA
1 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * *
5359437 CGACTTGCGCATCCCGTCTCTCTGGTCGGCGTAGT--------GCCCGCCCGCCTGCTCGTTTCG
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
* * * ** **
5359494 TCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGAT-TATACC-AGACTAAGGGTTGTG
131 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGA-ACCGAGGGTTGCA
* * * * ***
5359557 GCAGCAGGATTGACAGTACACAGAGGGGGACCCGGTTGATCCCCGGCTTGCGCATCCCGCCCCTC
194 GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * * ** * *
5359622 TGGCC-ACAGAGCGCCCGCACGCTCGTTTCATGGGTTGACCGAGGCATATGCAGTTCATTCCCAG
259 TGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * **
5359686 TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAACAGCACATG
324 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATG
* * * * *
5359751 CTGGGCTCCGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCACCGCCGGAGCATCGCC
389 CTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCC
* * ** * * * *
5359816 AGAGAACTTGACTTA-GGTATTGGGGTTCCGACGATC-AGGGAGGTCGGGGGGGTGTGCGTACAT
454 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGG-GGCCAGGGGGGTGTGCGCACAT
* ** *
5359879 GATGCGCGATGGGTGCTGGTACTTGGTGCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGA
518 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * *
5359944 ACTCACACTCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTC
583 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
5360009 TGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
648 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * **
5360074 TTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAAAT-AATTC
713 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
* * * * * *
5360138 TGAAAAAATTTTAAAAAATCTCAAACCGCAAAAA-TCTCAAAAATCATGAAAAATAAAAAATGAG
778 -GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* *
5360202 TCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATA
842 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
5360265 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
1 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * * ** *
5360330 CGGCTTGCGCTTCCCGTCTCTTTAGCTGGCGTAGTGCTCGTTCGCCCGCCTGCCCGCTCGTTTCG
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
* * * * * **
5360395 TCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGTACC-AGACTGAGGGTTGTGG
131 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGA-ACCGAGGGTTGCAG
** * *
5360459 CAGCAGGATCGATAGCACGCAAAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTC-
195 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
** * * * ** ** ** *
5360523 GATCGGCTGAGCGCCTGTACGCTCGTTTTATGGGTTGACCGAGGCATATAGAGTTCGTTCCCAGT
260 GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * * * *
5360588 CTAAGCATACGGAGTTCATTCCAAGTCTAAAATCAGACCGGACCAAGGGTTACAGCAACACATGC
325 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
* * ** * *
5360653 TGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCG
390 TGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCG
*** ** * * * *
5360718 GAGAACCTGACCTTGGGTTTTGGGGTTCCGACAATCG-GGGAGGCCGGGGGGGTGTGCGTACAGG
455 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGG-GGCCAGGGGGGTGTGCGCACATG
** ** * *
5360782 ATGCACGATGGGTGCTGGTACTTGGTGCTTATATTGGCCCCCTTTCCCTCAGCAAACCTCGAGAA
519 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
5360847 CTCACACCCCCTTAAAGAGCGTTTCAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
584 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
5360912 GAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTG
649 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * ** *
5360977 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAAATAGTTTTG
714 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* * ** *
5361042 AAATAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATAATGAAAAATAGAAAATGAGTC
779 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
5361107 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATA
844 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* ** * *
5361168 AAAATGCCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCA
1 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* ** * * * *
5361233 CAGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCATCCGCCTGCCCTCACGCTCAT
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C--CCGCCCGCCCGCCCGCTCGT
* * *
5361298 TCCGTCGGTTGGCTTAGGCATACGGAGATCATTCCCAGTCTAAGATCGGACC-AGACCGAGGGTT
127 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGA-ACCGAGGGTT
** * * * * * ** ** * **
5361362 GGGGTAGTAGGATTGACAGCATGCAGAGGGGGTGCCGATAGATCCCCGGCTTGCGCAACCTACCC
191 GCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
* * * * * * *
5361427 CTCTGGTCGGCTAAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGAATACAGAGTTCATTCC
256 CTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * *
5361492 CATTCTAAGCATACGGAGTTTATTCCCAGTC-AAGATCGGACCAGACCGAGGGTTGCGGGAGCAC
321 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAC
* * * * **
5361556 ATGTTGGGCTCGAGCTTGTGATGGTGCCGCATTTTTCTTCG-CTGGGGCACCATCGTCGGAGCAT
386 ATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCACCGGAGCAT
* * * * * * *
5361620 TGCCGGAGAACCTGACCGACGACATAT-TGGTTCCGACGATTGGGGGGGTC-GGGGGGTGTGCGT
450 CGCCGGAGAACCTGACCGACGGCAT-TGGGGTTCCGACGATCGAGGGGGCCAGGGGGGTGTGCGC
5361683 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
514 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * * *
5361748 GAGAACTCACACCCCCTTAAAAACCATTTGAGATTTTATAGGTTTGCTGCCTGTAGCCATTAAAG
579 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* **
5361813 TGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAGATCTTGTACACTTCGAGTTTTTAGCAA
644 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * *
5361877 AATTTTTTTGTGCATTCCAACAAAAATACAAGGATCACGTCTACCACGTTTGGGGCC-AAACTCC
709 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * *
5361941 ATCCGAAAAAATTTT-AAAAATCTCGAATCC-CAAAAAGTTTCAAAAATCCTGAAAAATAGAAAA
774 TTTCGAAAAAATTTTAAAAAATCCCGAA-CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
* * * *
5362004 CGAGTTGTCTTGCCATGAAACTTCACCTGAAGGTTTAAGGGACCACTGTATGAATTTACAAGCCA
838 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
5362069 T-
903 TA
**
5362070 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
1 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * * *
5362135 TGGCTTACGCATCCAGTCTCTCAGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCTCTCGTTTCG
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
* * * * * * * *
5362200 TCGGTTGGCTTAGGCATACAGAGTTTATTCCCAGTTTAAGAT-TAGACCGGACCAAAGGTTGCGG
131 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGAACCGAGGGTTGCAG
* * * *
5362264 CAGCAGGATC-G--GTA-GC--------ATCC-A--GATCCCTGGCTTGCGCATCCCGCCCTTCT
195 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * *
5362314 GGCCGGCTGAGCACCCACACACTCATTTCATGGGTTGACTTAGGAATACGGAGTTCATTCCCAGT
260 GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * *
5362379 CTAAGCATACGGAGTTCATTCCCAGTC-AAGAGCAGACCAGACCGAGGGTTGCGGCAGCACATGC
325 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
* * * * * ** *
5362443 TGGGCTCGGTCTTGTGATGGTGCGGCATTTTTCTTC-ACTGGGGCACCATCGTCGGAGCATTGCC
390 TGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCACCGGAGCATCGCC
* ** * * * * *
5362507 GGAGAACCTGACCGACGGTATTTTGGTTTCGATGATCG-GAAGGGCCGGGGGGGTGTGTGCACAT
454 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAG-GGGGCCAGGGGGGTGTGCGCACAT
* *
5362571 GATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCCATTTTCCCCTCATCAAACCTC
518 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCC--TAT-CCCTCATCAAACCT-
* *
5362636 CGAGAAATCACACCCCCTTAAAGAGCATTTTGAGATTTTACAGGTTTGCATGCCAGTAGCCCTTA
578 CGAGAACTCACACCCCCTTAAAGAGCA-TTTGAGATTTTACAGGTTTGC-TGCCAGTAGCCATTA
* * *
5362701 AAGTGTTTGGAAT-GGGACACTTTTTT-AAAT-GTCACAAAATCTTGTACACTTTCAAG-TTTTA
641 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTA
* * *
5362762 GATCAATTTTTTTGTGCATGCCAAAAAAAATATAAGGATCACGTCTA-CAAGTTT-GGGCCAAAA
705 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * * * * *
5362825 CTTCTTCCAAAAAAATTTTAAAAAATCCCGAACCACTAAAATTTTCAAAAAT-GTTAAAAAAATA
770 CTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCG-T-GAAAAATA
* *
5362889 GAAAACGAGTTGTCTTGCCATGAAACTACACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
833 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
5362954 AGCCATA
898 AGCCATA
* ** * *
5362961 AAAATGCCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCA
1 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* ** * * * *
5363026 CAGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCATCCGCCTGCCCTCACGCTCAT
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C--CCGCCCGCCCGCCCGCTCGT
* * *
5363091 TCCGTCGGTTGGCTTAGGCATACGGAGATCATTCCCAGTCTAAGATCGGACC-AGACCGAGGGTT
127 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGA-ACCGAGGGTT
** * * * * * ** ** * **
5363155 GGGGTAGTAGGATTGACAGCATGCAGAGGGGGTGCCGATAGATCCCCGGCTTGCGCAACCTACCC
191 GCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
** * * * * *
5363220 CTCTGGTAGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGAATACAGAGTTCATTCC
256 CTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * *
5363285 CATTCTAAGCATACGGAGTTTATTCCCAGTC-AAGATCGGACCAGACCGAGGGTTGCGGGAGCAC
321 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAC
* * * * **
5363349 ATGTTGGGCTCGAGCTTGTGATGGTGCCGCATTTTTCTTCG-CTGGGGCACCATCGTCGGAGCAT
386 ATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCACCGGAGCAT
* * * * * * *
5363413 TGCCGGAGAACCTGACCGACGACATAT-TGGTTCCGACGATTGGGGGGGTC-GGGGGGTGTGCGT
450 CGCCGGAGAACCTGACCGACGGCAT-TGGGGTTCCGACGATCGAGGGGGCCAGGGGGGTGTGCGC
5363476 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
514 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * * *
5363541 GAGAACTCACACCCCCTTAAAAACCATTTGAGATTTTATAGGTTTGCTGCCTGTAGCCATTAAAG
579 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* **
5363606 TGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAGATCTTGTACACTTCGAGTTTTTAGCAA
644 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * *
5363670 AATTTTTTTATGCATTCCAACAAAAATACAAGGATCACGTCTACCACGTTTGGGGCC-AAACTCC
709 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * * *
5363734 ATCCGAAAAAATTTTTAAAAATCTCGAATCC-CAAAAAGTTTCAAAAATCCTGAAAAATAGAAAA
774 TTTCGAAAAAATTTTAAAAAATCCCGAA-CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
* * *
5363798 CGAGTTGTCTTGCCATGAAACTTCACCTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCA
838 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
5363863 T-
903 TA
**
5363864 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
1 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * *
5363929 CGGCTTGCGCATCCCGTCTCTCTGACCGTCGTAGT--------GCCCACCCGCCCGCTCGTTTCA
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
* * * *
5363986 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACTGAGGGTTGCAAC
131 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCAGC
** * * * * ** *
5364051 AGCAGGATCGATAGCATGCAGAGGGGGACCCGACTGATCCTCAGCTAACGCATCCTGCCCCTCTG
196 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
** * * * * * *
5364116 GGTGACTGAACGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTC
261 GCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* ** * ** *
5364181 TAAGCATACGGAGTTCATTGCCAAACTATGATCAAACCGGACCGAGGGTTGCGGCTGCACATGCT
326 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * * ** * * * ** * *
5364246 AGGCTCGGGCTTGTGCTACTGTCGCATTTTTCTTCGTCGGGGTATCATCGTCGAAGCATCGTCGG
391 GGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGG
* * * *
5364311 AGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC--------GTGCGCAGATGAT
456 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGGTGTGCGCACATGAT
* *
5364368 GTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAACT
521 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
5364433 CACACCCCCTTAAAGAGCATTTGAGATTTTACA-GTTTGCTGCCAGTAGCCTCTTAAAG-GTCTG
586 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTG
* * * * *
5364496 AAATGGGAGGCACGTTTTCCAAATAGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
650 AAATGGG-GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * * *
5364561 TTTTGTGCATGCCAACAAAATTACAGGGATCACGTCTACCAAGTTTGGGACCAAAACTCTTTTCA
714 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* * * * *
5364626 AAAAAATTTTAAAAAATCCTGAACTGCAAAAAGTTTTAAAAATCGTGAAAAACAGAAAACGAGTA
779 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
5364691 GTCTTG-CATTGAAACTTCACGTGAAGGCTTAAGAGG-GCATTGTATGAATTTACAAGCCATA
844 GTCTTGCCA-TGAAACTTCACGTGAAGGCTTAAG-GGACCATTGTATGAATTTACAAGCCATA
* * **
5364752 AAAATGGCATTGGCACGCAGAAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTAA
1 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* ** *
5364817 CAGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTCG
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
* *
5364882 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACC-AGACTGAGTGTT--A
131 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGA-ACCGAGGGTTGCA
** * * * ** *
5364943 TGACAATAGGATCGGCAGCATGCAGAGCGGGACCCGACGGATCCCCGATTTGTGCATCCCGCCCC
194 -G-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
* * * *
5365008 TTTGGTCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCC
257 TCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * * *
5365072 AATCTAAGCATACGGAGTTCATTCCCTGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCACA
322 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACA
* * *
5365137 TGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCACCGGAGCATCG
387 TGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCG
* * ** * * * *
5365202 TCGGAGAACCCGACCGGTGGTATTGGGGCTCCGATGATCG-GGAGGGCCGGGGGGGTGTGCGCAC
452 CCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGG-GGGCCAGGGGGGTGTGCGCAC
* * *
5365266 ATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGG-CCCCGATCCCTTATCAAACCTCGA
516 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
5365330 GAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTG
581 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
5365395 TCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAA
646 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* *
5365460 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGG-AAAAACTCC-
711 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCT
* * * ** *
5365523 TTCAGAAAAAATTTTAAAAAATCCCTAACCACAAAAATTTTTGAAAATCATGAAAAATAGAAAAC
775 TTC-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* ** * *
5365588 AAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTGTTTTATGAATTTGCAAGCCAT
839 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
5365653 A
904 A
* **
5365654 AAAATGGAATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
1 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * *
5365719 CGGCTTGCGCATCCCGTCCCTCTGGCCGATGAAGT------------GCCCGCCCGCTCGTTTCG
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
* * * * * * * *
5365772 TCGGCTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTGTAGT
131 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCAGC
** ** * *** *
5365837 AGCAGGATCGATAGCACATAAAGGGGGACCCGGTGGATCCCCGGCTTGCGCATCCCGCCTCAT-T
196 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCC-CCTCT
* * *
5365901 GGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
260 GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * *
5365966 CTAAG-AT-C-G-G---------A--C-----T---A---GACTGAGGGTTGCGACAGTACATGC
325 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
** * * ** * ** *
5366005 TACGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCAGCATCGTCGGAGCATCGTCG
390 TGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCG
* * * * * * *
5366070 GAGAATCTGACCGACGGTATTAGGGTTCCGGCGGTCG-GGGGGGCAAGGGGGTGTGCGCACATGA
455 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGGTGTGCGCACATGA
* * ** *
5366134 TGTGCGATGTGTGCTGGAACCGGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAAC
520 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
5366199 TCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
585 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
5366264 AAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
650 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* ** * *
5366329 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAAGCCAAAAATCCTTCCGA
715 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
* * * *
5366394 AAAAATTTTAAAAAATCCCCAACCGTAAAAAGATTT-GAAAATCATGAAAAATAGAAAACGAGTC
780 AAAAATTTTAAAAAATCCCGAACCGCAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
5366458 GTCTTGCCATGAAACTTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
844 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
5366519 AAAATGGCATCGACACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
1 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * *
5366584 CGGCTTGCGCATCCCGTCCCTCTGGCCGATGAAGT------------GCCCGCCCGCTCGTTTCG
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
* * * * * * * *
5366637 TCGGCTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTGTAGT
131 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCAGC
** ** * *** *
5366702 AGCAGGATCGATAGCACATAAAGGGGGACCCGGTGGATCCCCGGCTTGCGCATCCCGCCTCAT-T
196 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCC-CCTCT
* * *
5366766 GGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
260 GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * *
5366831 CTAAG-AT-C-G-G---------A--C-----T---A---GACTGAGGGTTGCGACAGTACATGC
325 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
** * * ** * ** *
5366870 TACGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCAGCATCGTCGGAGCATCGTCG
390 TGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCG
* * * * * * *
5366935 GAGAATCTGACCGACGGTATTAGGGTTCCGGCGGTCG-GGGGGGCAAGGGGGTGTGCGCACATGA
455 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGGTGTGCGCACATGA
* * ** * *
5366999 TGTGCGATGTGTGCTGGAACCGGGCCCTTATATTAGCCTCCTATCCCTCATCAAACCTCGAGAAC
520 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
5367064 TCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
585 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
5367129 AAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
650 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * *
5367194 TTTGTGCATGCCAAACAAAATACAAGGATCATGTCTACCAAGTTTGGGGCGAAAAATCTTTTCGA
715 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
* *** * * *
5367259 AAAAATTTTCAAAAATCCCGAACTATAAAAAGTTTCAAAAATCGTGAAAAATAGGAAACTA-TTG
780 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
5367323 TCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTCCAAGCCATA
845 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
** ** * * * *
5367383 AAAATGGCATTGGCATGCAGAAATATGAAGATGCACTTAAACCCACCTACCACCGTATCGGTGCA
1 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
**
5367448 CGGCTTGCGCATCCCG--TCTCT------C----TG---GCCCGCCCGCCTACCCGCTCGTTTCG
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
* * * *
5367498 TCGGTTTGCTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCTG-ACC-AGATCGAGGGTTAC-
131 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGA-ACCGAGGGTTGCA
* ** * * ** * * * *
5367560 GATAGCAGGATCGATAGCATGCAGAGGGGGACTCGGTCGATCCTCGGCATGCACATCCCGCCTCT
194 G-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * * *
5367625 CTGGCCGGCTGAG-AGCCCACACGCTCATTTCACT-GGTTGACTTAGGCATACAGAGTTCATTTC
258 CTGGCCGGCTGAGCA-CCCGCACGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * *
5367688 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGCTACGGTAGCAC
321 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAC
** * * * * ** *
5367753 ATGCTGGGCTCAAGCATTTGCTGATGCCGCATTTTTCTTCGTCGGGGTACCATCGTCGAAGCATC
386 ATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATC
* * * * *
5367818 GCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACAATCG-GAGGGGCCGAGGGGGCTGTGCAC
451 GCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAG-GGGGCC-AGGGGGGTGTGCGC
* * * *
5367882 AAATGATGTGCGATGGGTGCTAGTACTTAGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTC
514 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
5367947 GAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACCGGTTTGCTGCCAGTAGCCATTAAAG
579 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
5368012 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
644 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* *
5368077 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGG-AAAAACTC
709 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTC
* ** ** *
5368141 C-TTCAGAAAAAAATTTAAAAAATCCCGAACCGCAAAATTTTTTGAAAATCATGAAAAATAGAAA
773 CTTTC-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* ** * *
5368205 ACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTGTTTTATGAATTTGCAAGCC
837 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
5368270 ATA
902 ATA
* **
5368273 AAAATGGAATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
1 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * *
5368338 CGGCTTGCGCATCCCGTCCCTCTGGCCGATGAAGT------------GCCCGCCCGCTCGTTTCG
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
* * * * * * * *
5368391 TCGGCTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTGTAGT
131 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCAGC
** ** * *** *
5368456 AGCAGGATCGATAGCACATAAAGGGGGACCCGGTGGATCCCCGGCTTGCGCATCCCGCCTCAT-T
196 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCC-CCTCT
* * *
5368520 GGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
260 GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * *
5368585 CTAAG-AT-C-G-G---------A--C-----T---A---GACTGAGGGTTGCGACAGTACATGC
325 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
** * * ** * ** *
5368624 TACGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCAGCATCGTCGGAGCATCGTCG
390 TGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCG
* * * * * * *
5368689 GAGAATCTGACCGACGGTATTAGGGTTCCGGCGGTCG-GGGGGGCAAGGGGGTGTGCGCACATGA
455 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGGTGTGCGCACATGA
* * ** * *
5368753 TGTGCGATGTGTGCTGGAACCGGGCCCTTATATTAGCCTCCTATCCCTCATCAAACCTCGAGAAC
520 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
5368818 TCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
585 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
5368883 AAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
650 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* ** * *
5368948 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCTTGGTTGGGGCCAAAACTCCTTTCAA
715 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
** *
5369013 AAAAATTTT-AAAAATCCCGAACCGCAAAAAGTTTTGAAAGT-GATGAAAAATAGAAAACGAGTC
780 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCG-TGAAAAATAGAAAACGAGTC
* * *
5369076 GTCTTGCCATTAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAGGCCATA
844 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * ** * * *
5369137 AAAATGGCTTTGGTATGCAGAAATATAAAGATGTTCCTAAACCCACCCACCACCCTATCGATCCA
1 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * * * *
5369202 TGGCTTGCGCATCCCGTCTCTCTGACCGGCGTAGTACCCGCCCGCCTGCCTGCCTGCTCGTTTCA
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
* * * *
5369267 TCGGTTGGCTTAGGCATACGGAGTTCATTCCGAGTCTAAGATC-AGATCAAACTGAGGGTTGCAG
131 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGAACCGAGGGTTGCAG
* ** * * *
5369331 CAGTAGGATCTACAGCACGCAGAGAGGGACCCGACCGATCCCCGGCTTGCGCATCCCTCCCCTTT
195 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * * * * *
5369396 AGCCGGCTGACCGCCCGCATGTTCGTTTTGTAGGTTGACTTAGGCATATGGAGTTCATTCCCAGT
260 GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * ** * *
5369461 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACTAGACCGAGGGTTGCGGGACCACATGC
325 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
* * * * *
5369526 TGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTTGTCAGGG----A--A-C----CATCGCCG
390 TGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCG
* * * * *
5369580 GAGAACCTGACC-AGCGGCATTGGGGTTCAGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACAAG
455 GAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGGTGTGCGCACATG
* * ** *
5369644 AGGTGTGATGGGTGCTGGTACTTGGCCCTTATATTTACCCCCTATCCCTCATCAAACCTTGAGAA
519 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
5369709 CTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCAATTAAAGTGTCT
584 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * *
5369774 GAAATGGGGACACATTTTTCAAATGGTCACAAAATCATGTACACTTCTAGTTTTTAGCCGAATTT
649 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
5369839 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCC
714 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* * * * *
5369903 AAAAAATTTTAAAAAATCCAGAACTGTAAAAAGTTTCAAAAATTGTGAAATATAGAAAACGAGTC
779 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
5369968 GTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
844 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * *
5370029 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATTGTTCCA
1 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * *
5370094 TGGCTTGCGCATCGCATCTCTCTGGCCGACGTAGTG---G-CCGCCCGCCCGCCAGCTTGTTGT-
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTT-TC
* * * * * * *
5370154 GTCAGTTGGCTTAGGCATACGGTGTTCATTCCCAATCTAAGATCGGATC-AGACCAAGGGTTGCG
130 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGA-ACCGAGGGTTGCA
* * * * * *
5370218 GTACCAAGATCGACAGCACGCAGAGGGGGACCC-AGCCAATCCCCGGGTTGCGCATCCCGCCCCT
194 GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * * *
5370282 CTGGTCGGCTGAACGCCCGTC-CGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
258 CTGGCCGGCTGAGCACCCG-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* *
5370346 AG--T---C-TA---AG---ATT----G-----GATTGGACC-GA--GA--GTTGTGGCAGCACA
322 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACA
* * * ** *
5370385 TGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTGTTCGTCGGGGCACCATCGTCGGAGCATCA
387 TGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCG
* * ** * * * *
5370450 CCGGAGAACCTGACCGGCGCCATTGGGGTTTTGGCGATCGGGGGGGCTGAGGGGGGTGTGCACAC
452 CCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGC-CAGGGGGGTGTGCGCAC
* * * *
5370515 ATGATGTGCGATGGGTGCTAGTACTCGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTTGA
516 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
5370580 GAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTG
581 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
5370645 TCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA
646 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * *
5370710 TTTTTTTGAGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAC-CCCT
711 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * *
5370774 TCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGA
776 TCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
*
5370839 GTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
841 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
**
5370903 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
1 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * *
5370968 CGGCTTGCGCATCCCTTCTCTCTGGCCGGCGTAGT--------GCCCGCCCGCCCACTCATTTCG
66 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
* *
5371025 T-TGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGAT
131 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
5371066 TGGACCAGAC
Statistics
Matches: 19738, Mismatches: 3650, Indels: 2285
0.77 0.14 0.09
Matches are distributed among these distances:
852 1 0.00
860 2 0.00
861 177 0.01
862 59 0.00
863 1 0.00
864 381 0.02
865 1457 0.07
866 16 0.00
867 168 0.01
868 1 0.00
869 38 0.00
870 20 0.00
871 1 0.00
872 2 0.00
873 50 0.00
874 466 0.02
875 72 0.00
876 278 0.01
877 949 0.05
878 95 0.00
879 454 0.02
880 321 0.02
881 146 0.01
882 8 0.00
883 279 0.01
884 84 0.00
885 126 0.01
886 101 0.01
887 227 0.01
888 414 0.02
889 572 0.03
890 682 0.03
891 985 0.05
892 781 0.04
893 379 0.02
894 306 0.02
895 246 0.01
896 168 0.01
897 458 0.02
898 407 0.02
899 260 0.01
900 636 0.03
901 645 0.03
902 1750 0.09
903 805 0.04
904 585 0.03
905 600 0.03
906 713 0.04
907 388 0.02
908 91 0.00
909 52 0.00
910 239 0.01
911 5 0.00
914 5 0.00
915 15 0.00
916 7 0.00
917 8 0.00
919 5 0.00
920 11 0.00
921 6 0.00
922 6 0.00
923 6 0.00
924 3 0.00
925 16 0.00
926 29 0.00
927 1 0.00
928 7 0.00
929 7 0.00
930 25 0.00
931 8 0.00
932 6 0.00
933 16 0.00
934 9 0.00
935 14 0.00
936 21 0.00
937 18 0.00
938 10 0.00
939 7 0.00
940 15 0.00
941 11 0.00
942 16 0.00
943 14 0.00
944 13 0.00
945 9 0.00
946 14 0.00
947 13 0.00
948 18 0.00
949 31 0.00
950 22 0.00
951 32 0.00
952 20 0.00
953 16 0.00
954 35 0.00
955 21 0.00
956 8 0.00
957 10 0.00
958 4 0.00
959 7 0.00
960 5 0.00
961 7 0.00
962 7 0.00
963 7 0.00
964 13 0.00
965 20 0.00
966 17 0.00
967 17 0.00
968 19 0.00
969 6 0.00
970 5 0.00
971 11 0.00
972 15 0.00
973 16 0.00
974 11 0.00
975 20 0.00
976 16 0.00
977 8 0.00
978 42 0.00
979 45 0.00
980 21 0.00
981 14 0.00
982 27 0.00
983 7 0.00
984 16 0.00
985 15 0.00
986 15 0.00
987 3 0.00
988 9 0.00
989 6 0.00
990 9 0.00
991 5 0.00
992 17 0.00
993 13 0.00
994 7 0.00
995 17 0.00
996 12 0.00
997 8 0.00
998 10 0.00
999 15 0.00
1000 15 0.00
1001 23 0.00
1002 23 0.00
1003 12 0.00
1004 8 0.00
1005 13 0.00
1006 10 0.00
1007 12 0.00
1008 9 0.00
1009 10 0.00
1010 6 0.00
1011 12 0.00
1012 13 0.00
1013 14 0.00
1014 11 0.00
1015 11 0.00
1016 8 0.00
1017 7 0.00
1018 5 0.00
1019 16 0.00
1020 14 0.00
1021 17 0.00
1022 15 0.00
1023 9 0.00
1024 558 0.03
1025 423 0.02
1026 299 0.02
1027 353 0.02
1028 327 0.02
1029 290 0.01
1030 387 0.02
1031 344 0.02
1032 315 0.02
1033 903 0.05
1034 361 0.02
1035 222 0.01
1036 301 0.02
1037 494 0.03
1038 321 0.02
1039 283 0.01
1040 1098 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (904 bp):
AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCAGC
AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
GCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
GGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGG
AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGGTGTGCGCACATGAT
GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
Found at i:5354658 original size:26 final size:26
Alignment explanation
Indices: 5354622--5354671 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
5354612 GCACACAGAA
5354622 ACATGAAGATGTACCTAAACCCACCT
1 ACATGAAGATGTACCTAAACCCACCT
*
5354648 ACATGAAGATGTACCTAAATCCAC
1 ACATGAAGATGTACCTAAACCCAC
5354672 GGCTTGCGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.40, C:0.28, G:0.12, T:0.20
Consensus pattern (26 bp):
ACATGAAGATGTACCTAAACCCACCT
Found at i:5355483 original size:26 final size:26
Alignment explanation
Indices: 5355453--5355505 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5355443 GTTGACTTAG
*
5355453 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5355479 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5355505 G
1 G
5355506 AATGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5356382 original size:26 final size:26
Alignment explanation
Indices: 5356346--5356398 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
5356336 GTTGACTTTG
5356346 GCATACGGAGTTCATTCCCCA-TCTAA
1 GCATACGGAGTTCATT-CCCAGTCTAA
*
5356372 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5356398 G
1 G
5356399 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5357925 original size:26 final size:26
Alignment explanation
Indices: 5357895--5357947 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5357885 GTTGACCGAG
*
5357895 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5357921 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5357947 G
1 G
5357948 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5366748 original size:865 final size:864
Alignment explanation
Indices: 5357921--5371084 Score: 14334
Period size: 865 Copynumber: 14.9 Consensus size: 864
5357911 CCCAGTCTAA
* * *
5357921 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGCTGCAGCAGTACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * *
5357986 -TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * ** * *
5358050 ACCTGACTTG--GGTATTGGGGTTCCGACGATCAGGGAGATCGAGGGGGTGTGCGTACATGATGT
131 ACCTGAC-CGACGGTATTGGGGTTCCGACGATC-GGGGGGGCGGGGGGGTGTGCGCACATGATGT
* ** *
5358113 GCGATGGGTGCTGGTACTTAGTGCTTATATTGGCCCCCTATCCCTCAGCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
5358178 CACCCCCTTAAAGAACATTCGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
5358243 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * * *
5358308 GTGCATGCCAACAAAAATACGAGGATCACATCTACCAAGTTTAGGGCCAAAAATCTTTTCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
5358373 AATTTAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAAACGTGAAAAATAGAAAACGAGTTGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * * *
5358438 TGCCATTAAGCTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAACGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
5358503 ATTGGCACATAGAAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
5358568 GCATCTCGTCTCTCTGGCCGGTGTAGTGCCGGCCCGCTCGTTTCATTGGTTGGCCTAGGCATACG
649 GCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
**
5358633 GAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGTGGCAGCAGGATCGACAGCACGCA
714 GAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCA
* * * *
5358698 GAGGGGGACCCGACGGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCACTCC-CTC
779 GAGGGGGACCCGATGGATCCCCGGCTTGCGCATCCCGCCCCT-TGGCCGGCTGAGCGC-CCGCAC
* *
5358762 GCTCATTTCGTGGGTTGACTTAGGCATACAG
842 GCTCGTTTCATGGGTTGAC-T-----T--AG
* * *
5358793 AGTTTATTCCTAGTCTAAGCATAAGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTT
1 -G-------C-A---T-A-C----GGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTT
* * *
5358858 GTGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACC--GG-AGCAT--
48 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCG
* * * * * ** *
5358918 T---A-C--CGAC---GAACCTGACCGACGGCATTGGGTTTCTGGCGATTTGGGGGGCCGGGGGG
113 TCGGAGCATCGCCGGAGAACCTGACCGACGGTATTGGGGTTCCGACGATCGGGGGGGCGGGGGGG
* * * * **
5358974 TGTACGCACATGTTCTGCGATGCGTGCTGGTACTTGGCCCTTATATT-GAACCCTAATCCCTCAT
178 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT-ATCCCTCAT
* * * *
5359038 CAAACCTTGAGAACTCGCACCTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGC
242 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
5359103 CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATT
307 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* ** *
5359168 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATTTCTAACAAGTTTGGGGCC
372 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * ** *
5359233 AAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTTGAAAATCGTGAAAAA
437 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAA
*
5359298 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTGAAGGGACCATTGTATGAATTTA
502 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * *
5359363 CAAGCCATAAAAATGGCATGGGCACGCAGCAATATGAAGATGTACCTAAACCCACCTACCACCCT
567 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * *
5359428 ATCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCTGCTCGTTTC
632 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCG--C-CC-GCTCGTTTC
* * ** *
5359493 GTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTATACCAGACTAAGGGTTGTGG
693 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGG
* * * * *
5359558 CAGCAGGATTGACAGTACACAGAGGGGGACCCGGTTGATCCCCGGCTTGCGCATCCCGCCCCTCT
758 CAGCAGGATCGACAGCACGCAGAGGGGGACCCGATGGATCCCCGGCTTGCGCATCCCGCCCCT-T
* *
5359623 GGCC-ACAGAGCGCCCGCACGCTCGTTTCATGGGTTGACCGAGGCATATGCAGTTCATTCCCAG
822 GGCCGGCTGAGCGCCCGCACGCTCGTTTCA-----T----G-GG--T-TG-A---C-TT---AG
* * **
5359686 TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAACAGCACATG
1 -----GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATG
* * ** * *
5359751 CTGGGCTCCGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCACCGCCGGAGCATCGCC
61 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCC
* * ** * * *
5359816 AGAGAACTTGACTTA-GGTATTGGGGTTCCGACGATCAGGGAGGTCGGGGGGGTGTGCGTACATG
126 GGAGAACCTGACCGACGGTATTGGGGTTCCGACGATC-GGGGGGGCGGGGGGGTGTGCGCACATG
* ** *
5359880 ATGCGCGATGGGTGCTGGTACTTGGTGCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAA
190 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
5359945 CTCACACTCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCT
255 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
5360010 GAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
320 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * ** *
5360075 TTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAAATAATTCTG
385 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * * *
5360140 AAAAAATTTTAAAAAATCTCAAACCGCAAAAA-TCTCAAAAATCATGAAAAATAAAAAATGAGTC
450 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
5360204 GTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAA
515 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
5360269 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
580 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
5360334 TTGCGCTTCCCGTCTCTTTAGCTGG-CGTAGTGCTCGTTCGCCCGCCTGCCCGCTCGTTTCGTCA
645 TTGCGCATCCCGTCTC--T--CTGGCCG--GTG-TAG-T-G--C-CC-GCCCGCTCGTTTCGTCG
* *
5360398 GTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGTACCAGACTGAGGGTTGTGGCAGC
697 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGGCAGC
* * ** * * **
5360463 AGGATCGATAGCACGCAAAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCGATCG
762 AGGATCGACAGCACGCAGAGGGGGACCCGATGGATCCCCGGCTTGCGCATCCCGCCCCTTGGCCG
* * * **
5360528 GCTGAGCGCCTGTACGCTCGTTTTATGGGTTGACCGAG
827 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
** *
5360566 GCATATAGAGTTCGTTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAAATCAGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A--C-----T-AGACC-G--
* * * *
5360631 CAAGGGTTACAGCAACACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
42 --AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
* * *** * *
5360696 CACCATCGCCGGAGCATCACCGGAGAACCTGACCTTGGGTTTTGGGGTTCCGACAATCGGGGAGG
105 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGTATTGGGGTTCCGACGATCGGGG-GG
* * * ** ** *
5360761 CCGGGGGGGTGTGCGTACAGGATGCACGATGGGTGCTGGTACTTGGTGCTTATATTGGCCCCCTT
169 GCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
5360826 TCCCTCAGCAAACCTCGAGAACTCACACCCCCTTAAAGAGCGTTTCAGATTTTTCAGGTTTGCTG
234 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
5360891 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACAC
299 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
5360956 TTCGAGTTTTTAGCTGAACTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
364 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * ** ** * * *
5361021 TTGGAGCCAAAAATAGTTTTGAAATAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATA
429 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
* *
5361086 ATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTA
494 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * * *
5361151 TGAATTTACAAGCCATAAAAATGCCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCT
559 TGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT
* *
5361216 ACCACCCAATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCATCCG
624 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCG------C-
* *
5361281 CCTGCCCTCACGCTCATTCCGTCGGTTGGCTTAGGCATACGGAGATCATTCCCAGTCTAAGATCG
682 CC-G--CT--CG-T--TT-CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTG
* * * * * * ** *
5361346 GACCAGACCGAGGGTTGGGGTAGTAGGATTGACAGCATGCAGAGGGGGTGCCGATAGATCCCCGG
738 GACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATGGATCCCCGG
* ** * * *
5361411 CTTGCGCAACCTACCCCTCTGGTCGGCTAAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAG
803 CTTGCGCATCCCGCCCCT-TGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * *
5361474 GAATACAGAGTTCATTCCCATTCTAAGCATACGGAGTTTATTCCCAGTCAAGATCGGACCAGACC
1 GCATACGGAG----TT--CATTC----C---C--AG-----T--C--T-AAGATCGGACTAGACC
* * * * * * *
5361539 GAGGGTTGCGGGAGCACATGTTGGGCTCGAGCTTGTGATGGTGCCGCATTTTTCTTCGCTGGGGC
41 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGC
* * *
5361604 ACCATCGTCGGAGCATTGCCGGAGAACCTGACCGACGACATATT--GGTTCCGACGATTGGGGGG
106 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACG--GTATTGGGGTTCCGACGATCGGGGGG
*
5361667 GTC-GGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
169 G-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
5361731 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAACCATTTGAGATTTTATAGGTTTGCT
233 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
5361796 GCCTGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAGATCTTGTACA
298 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
** * *
5361860 CTTCGAGTTTTTAGCAAAATTTTTTTGTGCATTCCAACAAAAATACAAGGATCACGTCTACCACG
363 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* *
5361925 TTTGGGGCC-AAACTCCATCCGAAAAAATTTT-AAAAATCTCGAATCC-CAAAAAGTTTCAAAAA
428 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA-CCGCAAAAAGTTTCAAAAA
* * * * *
5361987 TCCTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACCTGAAGGTTTAAGGGACCACTG
492 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
5362052 TATGAATTTACAAGCCAT-AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
557 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
* * * * * *
5362116 CTACCACCCTATCGATCCATGGCTTACGCATCCAGTCTCTCAGGCCGGCATAGTGCCCGCCCGCC
622 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG--T-GT---AG--TGCC
* * * *
5362181 CGCCCGCCCTCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTTATTCCCAGTTTAAGATTAGA
679 CGCCCG----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
* ** * * * * *
5362246 CCGGACCAAAGGTTGCGGCAGCAGGATCG---GTA-GC--------ATCC-A--GATCCCTGGCT
740 CCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATGGATCCCCGGCT
* * * * *
5362296 TGCGCATCCCGCCCTTCTGGCCGGCTGAGCACCCACACACTCATTTCATGGGTTGACTTAG
805 TGCGCATCCCGCCCCT-TGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
*
5362357 GAATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAGAGCAGACCAGACC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C--T------------AGACC
* * * * *
5362422 GAGGGTTGCGGCAGCACATGCTGGGCTCGGTCTTGTGATGGTGCGGCATTTTTCTTCACTGGGGC
41 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGC
* ** * * * *
5362487 ACCATCGTCGGAGCATTGCCGGAGAACCTGACCGACGGTATTTTGGTTTCGATGATCGGAAGGGC
106 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGTATTGGGGTTCCGACGATCGG-GGGGG
* *
5362552 CGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCCAT
170 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCC--
* *
5362617 TTTCCCCTCATCAAACCTCCGAGAAATCACACCCCCTTAAAGAGCATTTTGAGATTTTACAGGTT
232 TAT-CCCTCATCAAACCT-CGAGAACTCACACCCCCTTAAAGAGCA-TTTGAGATTTTACAGGTT
* * *
5362682 TGCATGCCAGTAGCCCTTAAAGTGTTTGGAAT-GGGACACTTTTTT-AAAT-GTCACAAAATCTT
294 TGC-TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * * *
5362744 GTACACTTTCAAG-TTTTAGATCAATTTTTTTGTGCATGCCAAAAAAAATATAAGGATCACGTCT
358 GTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * *
5362808 A-CAAGTTT-GGGCCAAAACTTCTTCCAAAAAAATTTTAAAAAATCCCGAACCACTAAAATTTTC
422 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
** * * *
5362871 AAAAATGTTAAAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTACACGTGAAGGCTTAAGGGA
487 AAAAATCAT-GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * * *
5362936 CCATTGTATGAATTTACAAGCCATAAAAATGCCATTGGCATGCAAAAATATGAAGATGTGCCTAA
551 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAA
* *
5363001 ACCCACCTACCACCCAATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCG
616 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCG
*
5363066 CCCATCCGCCTGCCCTCACGCTCATTCCGTCGGTTGGCTTAGGCATACGGAGATCATTCCCAGTC
681 ------C-CC-G--CT--CG-T--TT-CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * * ** *
5363131 TAAGATCGGACCAGACCGAGGGTTGGGGTAGTAGGATTGACAGCATGCAGAGGGGGTGCCGATAG
730 TAAGATTGGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATGG
* ** ** *
5363196 ATCCCCGGCTTGCGCAACCTACCCCTCTGGTAGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTG
795 ATCCCCGGCTTGCGCATCCCGCCCCT-TGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
5363261 ACTTAG
859 ACTTAG
* * *
5363267 GAATACAGAGTTCATTCCCATTCTAAGCATACGGAGTTTATTCCCAGTCAAGATCGGACCAGACC
1 GCATACGGAG----TT--CATTC----C---C--AG-----T--C--T-AAGATCGGACTAGACC
* * * * * * *
5363332 GAGGGTTGCGGGAGCACATGTTGGGCTCGAGCTTGTGATGGTGCCGCATTTTTCTTCGCTGGGGC
41 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGC
* * *
5363397 ACCATCGTCGGAGCATTGCCGGAGAACCTGACCGACGACATATT--GGTTCCGACGATTGGGGGG
106 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACG--GTATTGGGGTTCCGACGATCGGGGGG
*
5363460 GTC-GGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
169 G-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
5363524 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAACCATTTGAGATTTTATAGGTTTGCT
233 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
5363589 GCCTGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAGATCTTGTACA
298 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
** * * *
5363653 CTTCGAGTTTTTAGCAAAATTTTTTTATGCATTCCAACAAAAATACAAGGATCACGTCTACCACG
363 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * *
5363718 TTTGGGGCC-AAACTCCATCCGAAAAAATTTTTAAAAATCTCGAATCC-CAAAAAGTTTCAAAAA
428 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA-CCGCAAAAAGTTTCAAAAA
* * * *
5363781 TCCTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACCTGAAGGTTTAAGGGACCATTG
492 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
5363846 TATGAATTTACAAGCCAT-AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
557 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
*
5363910 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGACC-GTCGTAGTGCCCACCCGC
622 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGT-GTAGTG----CCCGC
*
5363974 CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC-GAAC
682 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAG-AC
*** * * * * **
5364038 TGAGGGTTGCAACAGCAGGATCGATAGCATGCAGAGGGGGACCCGACT-GATCCTCAGCTAACGC
746 TGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-TGGATCCCCGGCTTGCGC
* ** * * *
5364102 ATCCTGCCCCTCTGGGTGACTGAACGCCCGCACACTCGTTTCATGGGTTGACTTAG
810 ATCCCGCCCCT-TGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
*
5364158 GCATACGGAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTGCCAAACTATGATCAAACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C---G------G----AC-----T---A---GAC
* * * ** * **
5364223 CGAGGGTTGCGGCTGCACATGCTAGGCTCGGGCTTGTGCTACTGTCGCATTTTTCTTCGTCGGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
* * * * * * *
5364288 TATCATCGTCGAAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
105 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGTATTGGGGTTCCGACGATCGGGGGGG
* * *
5364353 C-------CGTGCGCAGATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTAT
170 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
5364411 CCCTCATCAAACCTCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-GTTTGCTGC
235 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * * * *
5364475 CAGTAGCCTCTTAAAG-GTCTGAAATGGGAGGCACGTTTTCCAAATAGCCACAAAATCTTGTACA
300 CAGTAGCC-ATTAAAGTGTCTGAAATGGG-GACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
5364539 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAATTACAGGGATCACGTCTACCAAG
363 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * * * *
5364604 TTTGGGACCAAAACTCTTTTCAAAAAAATTTTAAAAAATCCTGAACTGCAAAAAGTTTTAAAAAT
428 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
* * * *
5364669 CGTGAAAAACAGAAAACGAGTAGTCTTG-CATTGAAACTTCACGTGAAGGCTTAAGAGG-GCATT
493 CATGAAAAATAGAAAACGAGTCGTCTTGCCA-TGAAACTTCACGTGAAGGCTTAAG-GGACCATT
* *
5364732 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATGTGAAGATGTGCCTAAACCCA
556 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCA
** *
5364797 CCTACCACCCTATCGATTAACAGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGC
621 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGT--------GC
**
5364862 CCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
678 CCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGG
* * * ** * * * * **
5364927 ACCAGACTGAGTGTTATGACAATAGGATCGGCAGCATGCAGAGCGGGACCCGACGGATCCCCGAT
739 ACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATGGATCCCCGGC
* * * *
5364992 TTGTGCATCCCGCCCCTTTGGTCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
804 TTGCGCATCCCGCCCC-TTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
*
5365054 GCATAC-GAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCTGTCTAAGATTGGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A--------C------T-----AGAC
* * *
5365118 CGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
** * * ** * *
5365183 CACCATCACCGGAGCATCGTCGGAGAACCCGACCGGTGGTATTGGGGCTCCGATGATCGGGAGGG
105 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGTATTGGGGTTCCGACGATCGGG-GGG
* * *
5365248 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGG-CCCCGA
169 GCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
5365312 TCCCTTATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTG
234 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
5365377 CCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
299 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
5365442 TTCGAGTTTTTAGCTCAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
364 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * * **
5365507 TTAGGGG-AAAAACTCCTTCAGAAAAAATTTTAAAAAATCCCTAACCACAAAAATTTTTGAAAAT
429 TT-GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
* ** *
5365571 CATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTGTTTT
493 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
5365636 ATGAATTTGCAAGCCATAAAAATGGAATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
558 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
* * *
5365701 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGATGAAGTGCCCGCCCGCTC
623 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCTC
* * *
5365766 GTTTCGTCGGCTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGT
688 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGT
* * * ** * *
5365831 TGTAGTAGCAGGATCGATAGCACATAAAGGGGGACCCGGTGGATCCCCGGCTTGCGCATCCCGCC
753 TGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATGGATCCCCGGCTTGCGCATCCCGCC
* *
5365896 TCATTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
818 -CCTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * **
5365944 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACTGAGGGTTGCGACAGTACATGCTACG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
5366009 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCAGCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * **
5366074 ATCTGACCGACGGTATTAGGGTTCCGGCGGTCGGGGGGGCAAGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGTATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
* * ** *
5366139 GATGTGTGCTGGAACCGGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
5366204 CCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
5366269 GGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
** *
5366334 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAAGCCAAAAATCCTTCCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
5366399 TTTTAAAAAATCCCCAACCGTAAAAAGATTT-GAAAATCATGAAAAATAGAAAACGAGTCGTCTT
456 TTTTAAAAAATCCCGAACCGCAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
5366463 GCCATGAAACTTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
5366528 TCGACACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
5366593 CATCCCGTCCCTCTGGCCGATGAAGTGCCCGCCCGCTCGTTTCGTCGGCTGGCTTAGGCATACGG
650 CATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * * ** *
5366658 AGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTGTAGTAGCAGGATCGATAGCACATAA
715 AGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG
* * *
5366723 AGGGGGACCCGGTGGATCCCCGGCTTGCGCATCCCGCCTCATTGGCCGGTTGAGCGCCCGCACGC
780 AGGGGGACCCGATGGATCCCCGGCTTGCGCATCCCGCC-CCTTGGCCGGCTGAGCGCCCGCACGC
5366788 TCGTTTCATGGGTTGACTTAG
844 TCGTTTCATGGGTTGACTTAG
* * * **
5366809 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACTGAGGGTTGCGACAGTACATGCTACG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
5366874 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCAGCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * **
5366939 ATCTGACCGACGGTATTAGGGTTCCGGCGGTCGGGGGGGCAAGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGTATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
* * ** * *
5367004 GATGTGTGCTGGAACCGGGCCCTTATATTAGCCTCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
5367069 CCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
5367134 GGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
5367199 GCATGCCAA-ACAAAATACAAGGATCATGTCTACCAAGTTTGGGGCGAAAAATCTTTTCGAAAAA
391 GCATGCCAACA-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *** * * * *
5367263 ATTTTCAAAAATCCCGAACTATAAAAAGTTTCAAAAATCGTGAAAAATAGGAAACTA-TTGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
5367327 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTCCAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * ** * * * *
5367392 TTGGCATGCAGAAATATGAAGATGCACTTAAACCCACCTACCACCGTATCGGTGCACGGCTTGCG
585 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *** ** * *
5367457 CATCCCGTCTCTCTGGCC--CG-CCCGCCTACCCGCTCGTTTCGTCGGTTTGCTAAGGCATACGG
650 CATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
** ** * *
5367519 AGTTCATTCCCAGTCTAAGATCT-GACCAGA-TCGAGGGTTACGATAGCAGGATCGATAGCATGC
715 AGTTCATTCCCAGTCTAAGAT-TGGACCAGACT-GAGGGTTGTGGCAGCAGGATCGACAGCACGC
* * * * * * * * *
5367582 AGAGGGGGACTCGGTCGATCCTCGGCATGCACATCCCGCCTCTCTGGCCGGCTGAGAGCCCACAC
778 AGAGGGGGACCCGATGGATCCCCGGCTTGCGCATCCCGCCCCT-TGGCCGGCTGAGCGCCCGCAC
*
5367647 GCTCATTTCACTGGTTGACTTAGGCATACAGAGTTCATTTCCAG
842 GCTCGTTTCA-TGG--G---T-----T---GA---C--TT--AG
* * * * *
5367691 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGCTACGGTAGCACATG
1 -----GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATG
** * * ** * * *
5367756 CTGGGCTCAAGCATTTGCTGATGCCGCATTTTTCTTCGTCGGGGTACCATCGTCGAAGCATCGCT
61 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCC
* * * * * * *
5367821 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACAATCGGAGGGGCCGAGGGGGCTGTGCACAAAT
126 GGAGAACCTGACCGACGGTATTGGGGTTCCGACGATCGG-GGGGGCG-GGGGGGTGTGCGCACAT
* * *
5367886 GATGTGCGATGGGTGCTAGTACTTAGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGA
189 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
5367951 ACTCACACCCGCTTAAAGAGCATTTGAGATTTTACCGGTTTGCTGCCAGTAGCCATTAAAGTGTC
254 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
5368016 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
319 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
*
5368081 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGG-AAAAACTCCTTC
384 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTC
* * ** ** *
5368145 AGAAAAAAATTTAAAAAATCCCGAACCGCAAAATTTTTTGAAAATCATGAAAAATAGAAAACAAG
448 CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
** * *
5368210 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTGTTTTATGAATTTGCAAGCCATAAA
513 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
5368275 AATGGAATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
578 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
5368340 GCTTGCGCATCCCGTCCCTCTGGCCGATGAAGTGCCCGCCCGCTCGTTTCGTCGGCTGGCTTAGG
643 GCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * *
5368405 CATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTGTAGTAGCAGGATCGATAG
708 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAG
** * * * *
5368470 CACATAAAGGGGGACCCGGTGGATCCCCGGCTTGCGCATCCCGCCTCATTGGCCGGTTGAGCGCC
773 CACGCAGAGGGGGACCCGATGGATCCCCGGCTTGCGCATCCCGCC-CCTTGGCCGGCTGAGCGCC
5368535 CGCACGCTCGTTTCATGGGTTGACTTAG
837 CGCACGCTCGTTTCATGGGTTGACTTAG
* * * **
5368563 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACTGAGGGTTGCGACAGTACATGCTACG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
5368628 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCAGCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * **
5368693 ATCTGACCGACGGTATTAGGGTTCCGGCGGTCGGGGGGGCAAGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGTATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
* * ** * *
5368758 GATGTGTGCTGGAACCGGGCCCTTATATTAGCCTCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
5368823 CCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
5368888 GGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
** * * *
5368953 GCATGCCAACAAAAATACAAGGATCACGTCTACCTTGGTTGGGGCCAAAACTCCTTTCAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
** * *
5369018 TTTT-AAAAATCCCGAACCGCAAAAAGTTTTGAAAGTGATGAAAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * * *
5369082 CCATTAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCTT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * * * *
5369147 TGGTATGCAGAAATATAAAGATGTTCCTAAACCCACCCACCACCCTATCGATCCATGGCTTGCGC
586 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
5369212 ATCCCGTCTCTCTGACCGGCGTAGTACCCGCCCGCCTGCCTGCCTGCTCGTTTCATCGGTTGGCT
651 ATCCCGTCTCTCTGGCCGGTGTAGT----G--C-CC-G-C--CC-GCTCGTTTCGTCGGTTGGCT
* ** * * ** * *
5369277 TAGGCATACGGAGTTCATTCCGAGTCTAAGATCAGATCAAACTGAGGGTTGCAGCAGTAGGATCT
704 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGGCAGCAGGATCG
* ** * * *
5369342 ACAGCACGCAGAGAGGGACCCGACCGATCCCCGGCTTGCGCATCCCTCCCCTTTAGCCGGCTGAC
769 ACAGCACGCAGAGGGGGACCCGATGGATCCCCGGCTTGCGCATCCCGCCCC-TTGGCCGGCTGAG
* * *
5369407 CGCCCGCATGTTCGTTTTGTAGGTTGACTTAGGCATATGGAGTTCATTCCCAG
833 CGCCCGCACGCTCG-TTT-CA---TG-----GG--T-T-GA---C-TT---AG
* * * *
5369460 TCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACTAGACCGAGGGTTGCGGGACCACATG
1 -----GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATG
* * *** *
5369525 CTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTTGTCAGGG-A--A----C----CATCGCC
61 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCC
* * * *
5369579 GGAGAACCTGACC-AGCGGCATTGGGGTTCAGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACAA
126 GGAGAACCTGACCGA-CGGTATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGGTGTGCGCACAT
* * ** *
5369643 GAGGTGTGATGGGTGCTGGTACTTGGCCCTTATATTTACCCCCTATCCCTCATCAAACCTTGAGA
189 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * *
5369708 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCAATTAAAGTGTC
254 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * *
5369773 TGAAATGGGGACACATTTTTCAAATGGTCACAAAATCATGTACACTTCTAGTTTTTAGCCGAATT
319 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
5369838 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
384 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * ** *
5369903 -AAAAAATTTTAAAAAATCCAGAACTGTAAAAAGTTTCAAAAATTGTGAAATATAGAAAACGAGT
449 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
*
5369967 CGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
514 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * * *
5370032 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATTGTTCCATGG
579 ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * *
5370097 CTTGCGCATCGCATCTCTCTGGCCGACGTAGTGGCCGCCCGCCCGC-CAGCTTGTTGTGTCAGTT
644 CTTGCGCATCCCGTCTCTCTGGCCG--GT-GTAG-TGCCCGCCCGCTC-G--T-TT-CGTCGGTT
* * * * ** * * * *
5370161 GGCTTAGGCATACGGTGTTCATTCCCAATCTAAGATCGGATCAGACCAAGGGTTGCGGTACCAAG
700 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGGCAGCAGG
* * *
5370226 ATCGACAGCACGCAGAGGGGGACCC-A-GCCAATCCCCGGGTTGCGCATCCCGCCCCTCTGGTCG
765 ATCGACAGCACGCAGAGGGGGACCCGATG--GATCCCCGGCTTGCGCATCCCGCCCCT-TGGCCG
* *
5370289 GCTGAACGCCCGTC-CGCTCATTTCATGGGTTGACTTAG
827 GCTGAGCGCCCG-CACGCTCGTTTCATGGGTTGACTTAG
* * * * *
5370327 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATTGGACCGAGAGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** *
5370392 CTCGGGCATGTGCTGGTGCCGTATTTTTGTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* ** ** * *
5370457 ACCTGACCGGCGCCATTGGGGTTTTGGCGATCGGGGGGGCTGAGGGGGGTGTGCACACATGATGT
131 ACCTGACCGACGGTATTGGGGTTCCGACGATCGGGGGGGC-G-GGGGGGTGTGCGCACATGATGT
* * * *
5370522 GCGATGGGTGCTAGTACTCGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
5370587 CACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
5370652 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
5370717 GAGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTT-CAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
5370781 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
5370846 TGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
5370911 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
5370976 GCATCCCTTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACTCATTTCGT-TGTTGGCTTAGGCA
649 GCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCG----CTCGTTTCGTCGGTTGGCTTAGGCA
* **
5371040 TACGGAGTTTATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTG
710 TACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTG
5371085 CGGTAGCACA
Statistics
Matches: 10535, Mismatches: 1279, Indels: 958
0.82 0.10 0.08
Matches are distributed among these distances:
858 3 0.00
859 3 0.00
860 3 0.00
861 147 0.01
862 95 0.01
863 2 0.00
864 391 0.04
865 1463 0.14
866 11 0.00
867 141 0.01
868 4 0.00
869 56 0.01
870 16 0.00
871 10 0.00
872 7 0.00
873 50 0.00
874 463 0.04
875 30 0.00
876 149 0.01
877 470 0.04
878 22 0.00
879 8 0.00
880 108 0.01
881 138 0.01
882 6 0.00
883 195 0.02
884 90 0.01
885 130 0.01
886 102 0.01
887 270 0.03
888 275 0.03
889 432 0.04
890 483 0.05
891 380 0.04
892 563 0.05
893 333 0.03
894 303 0.03
895 212 0.02
896 174 0.02
897 18 0.00
898 74 0.01
899 13 0.00
900 7 0.00
901 241 0.02
902 888 0.08
903 477 0.05
904 187 0.02
905 163 0.02
906 160 0.02
907 216 0.02
908 50 0.00
909 58 0.01
910 188 0.02
911 1 0.00
912 11 0.00
914 6 0.00
916 5 0.00
918 2 0.00
920 2 0.00
921 1 0.00
923 3 0.00
924 1 0.00
925 2 0.00
928 2 0.00
929 1 0.00
930 3 0.00
931 2 0.00
932 5 0.00
933 4 0.00
934 3 0.00
935 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (864 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGACGGTATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGA
GGGGGACCCGATGGATCCCCGGCTTGCGCATCCCGCCCCTTGGCCGGCTGAGCGCCCGCACGCTC
GTTTCATGGGTTGACTTAG
Found at i:5367699 original size:26 final size:26
Alignment explanation
Indices: 5367670--5367722 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5367660 GTTGACTTAG
*
5367670 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5367696 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5367722 G
1 G
5367723 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5369468 original size:26 final size:26
Alignment explanation
Indices: 5369439--5369491 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5369429 GTTGACTTAG
5369439 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
5369465 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
5369491 G
1 G
5369492 ATCGAACTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:5370096 original size:892 final size:884
Alignment explanation
Indices: 5368563--5371085 Score: 3178
Period size: 874 Copynumber: 2.8 Consensus size: 884
5368553 GTTGACTTAG
* * * **
5368563 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACTGAGGGTTGCGACAGTACATGCTACG
1 GCATATGGAGTTCATTCCCAGTCTAAGATC-GACTAGAC-GAGGGTTGCGGCAGCACATGCTGGG
* * * *
5368628 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCAGCATCGTCGGAGCATCGTCGGAGA
64 CTCGGGCATGTGCTGGTGCCACATTTTTCTT---C--GTCAG----G--GAACCATCGCCGGAGA
* * * * * **
5368693 ATCTGACCGACGGTATTAGGGTTCCGGCGGTCGGGGGGG-CAAGGGGGTGTGCGCACATGATGTG
118 ACCTGACCG-CGGCATTGGGGTTCAGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
5368757 CGATGTGTGCTGGAAC-CGGGCCCTTATA-TTAGCCTCCTATCCCTCATCAAACCTCGAGAACTC
182 CGATGGGTGCTGGTACTC-GGCCCTTATATTTA-CCCCCTATCCCTCATCAAACCTTGAGAACTC
*
5368820 ACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
245 ACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAA
*
5368885 ATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
310 ATGGGGACACTTTTT-CAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTT
** *
5368950 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCTTGGTTGGGGCCAAAACTCCTTTCAAAA
374 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCAAAA
* ** *
5369015 AAATTTT-AAAAATCCCGAACCGCAAAAAGTTT-TGAAAGTGATGAAAAATAGAAAACGAGTCGT
438 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTG-TGAAAAATAGAAAACGAGTCGT
* * *
5369078 CTTGCCATTAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATG
502 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * *
5369143 GCTTTGGTATGCAGAAATATAAAGATGTTCCTAAACCCACCCACCACCCTATCGATCCATGGCTT
567 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
* * * * * *
5369208 GCGCATCCCGTCTCTCTGACCGGCGTAGTACCCGCCCGCCTGCCTGCCTGCTCGTTTCATCGGTT
632 GCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCAGCCTG-TCGTGTCA---GTT
* * ** ** *
5369273 GGCTTAGGCATACGGAGTTCATTCCGAGTCTAAGATCAGATCAAACTGAGGGTTGCAGCAGTAGG
693 GGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCAAACCAAGGGTTGCAGCACCAAG
* * * *
5369338 ATCTACAGCACGCAGAGAGGGACCC-GACCGATCCCCGGCTTGCGCATCCCTCCCCTTTAGCCGG
758 ATCGACAGCACGCAGAGAGGGACCCAG-CCAATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGG
* * * * ** *
5369402 CTGACCGCCCG-CATGTTCGTTTTGTAGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
822 CTGAACGCCCGTC-CGCTCATTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
5369465 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACTAGACCGAGGGTTGCGGGACCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCG-ACTAGA-CGAGGGTTGCGGCAGCACATGCTGGG
* *
5369530 CTTGGGCATGTGCTGGTGCCACATTTTTCTTTGTCAGGGAACCATCGCCGGAGAACCTGACCAGC
64 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGAACCATCGCCGGAGAACCTGACC-GC
* * *
5369595 GGCATTGGGGTTCAGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACAAGAGGTGTGATGGGTGCT
128 GGCATTGGGGTTCAGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
5369660 GGTACTTGGCCCTTATATTTACCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
193 GGTACTCGGCCCTTATATTTACCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
* *
5369725 GAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCAATTAAAGTGTCTGAAATGGGGACACATT
258 GAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACAC-TT
* *
5369790 TTTCAAATGGTCACAAAATCATGTACACTTCTAGTTTTTAGCCGAATTTTTTTGTGCATGCCAAC
322 TTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
*
5369855 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAAT
387 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAAAAAAATTTTAAAAAAT
* * *
5369920 CCAGAACTGTAAAAAGTTTCAAAAATTGTGAAATATAGAAAACGAGTCGTCTTGCCATGAAACTT
452 CCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
*
5369985 CATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
517 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* * * *
5370050 AATATGAAGATGTGCCTAAACCCACCTACCGCCCTATTGTTCCATGGCTTGCGCATCGCATCTCT
582 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCATCTCT
* * * * *
5370115 CTGGCCGACGTAGTGGCCGCCCGCCCGCCAGCTTGTTGTGTCAGTTGGCTTAGGCATACGGTGTT
647 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCAGCCTGTCGTGTCAGTTGGCTTAGGCATACGGAGTT
* * * * *
5370180 CATTCCCAATCTAAGATCGGATCAGACCAAGGGTTGCGGTACCAAGATCGACAGCACGCAGAGGG
712 CATTCCCAATCTAAGATCAGATCAAACCAAGGGTTGCAGCACCAAGATCGACAGCACGCAGAGAG
* * *
5370245 GGACCCAGCCAATCCCCGGGTTGCGCATCCCGCCCCTCTGGTCGGCTGAACGCCCGTCCGCTCAT
777 GGACCCAGCCAATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAACGCCCGTCCGCTCAT
*
5370310 TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 TTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
5370353 G-AT-T-G-G---ATT----G-----GA-C--C--GA-GA--GTTGTGGCAGCACATGCTGGGCT
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGACTAGACGAGGGTTGCGGCAGCACATGCTGGGCT
** * * *
5370394 CGGGCATGTGCTGGTGCCGTATTTTTGTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAAC
66 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGG-A--A----C----CATCGCCGGAGAAC
* ** * *
5370459 CTGACCGGCGCCATTGGGGTTTTGGCGATCGGGGGGGCTGAGGGGGGTGTGCACACATGATGTGC
120 CTGACC-GCGGCATTGGGGTTCAGGCGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGC
* ** *
5370524 GATGGGTGCTAGTACTCGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTTGAGAACTCACA
183 GATGGGTGCTGGTACTCGGCCCTTATATTTACCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* * *
5370589 CCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATG
248 CCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATG
5370654 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-TGAGTTTTTAGCTGAATTTTTTTG
313 GGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCT-AGTTTTTAGCTGAATTTTTTTG
* * * *
5370718 AGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTCAAAAAAA
376 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAAAAAAA
* *
5370783 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTG
441 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTG
*
5370848 CCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
506 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
5370913 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
571 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
* * *
5370978 ATCCCTTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACTCA---TTTCGT-T--GTTGGCTTAG
636 ATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC-CAGCCTGTCGTGTCAGTTGGCTTAG
* * ** * *
5371037 GCATACGGAGTTTATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGC
700 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCAAACCAAGGGTTGC
5371086 GGTAGCACAT
Statistics
Matches: 1439, Mismatches: 157, Indels: 83
0.86 0.09 0.05
Matches are distributed among these distances:
862 51 0.04
863 1 0.00
864 2 0.00
865 1 0.00
866 2 0.00
868 1 0.00
869 55 0.04
871 2 0.00
872 6 0.00
873 49 0.03
874 477 0.33
875 2 0.00
877 1 0.00
881 3 0.00
884 1 0.00
885 1 0.00
886 1 0.00
887 2 0.00
888 164 0.11
889 2 0.00
891 64 0.04
892 447 0.31
893 14 0.01
897 4 0.00
901 1 0.00
902 84 0.06
903 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (884 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGACTAGACGAGGGTTGCGGCAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGAACCATCGCCGGAGAACCTGACCGCGGC
ATTGGGGTTCAGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTCGGCCCTTATATTTACCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTC
AAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAAAAAAATTTTAAAAAATCCCG
AACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCATCTCTCTGG
CCGGCGTAGTGCCCGCCCGCCCGCCAGCCTGTCGTGTCAGTTGGCTTAGGCATACGGAGTTCATT
CCCAATCTAAGATCAGATCAAACCAAGGGTTGCAGCACCAAGATCGACAGCACGCAGAGAGGGAC
CCAGCCAATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAACGCCCGTCCGCTCATTTCA
TAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5372981 original size:870 final size:850
Alignment explanation
Indices: 5371037--5373416 Score: 3118
Period size: 870 Copynumber: 2.8 Consensus size: 850
5371027 GTTGGCTTAG
* * * * * * * *
5371037 GCATACGGAGTTTATTCCCAGTCTAAGAT-TGGACCAGACCAAGGGTTGCGGTAGCACATGCTGG
1 GCATACGAAGTGTATTCCCAGACTAAGATCAGAATCAGACCGAGGGTTGCGGCAGCACATGCTGG
* ** *
5371101 GCTCGGGCATGTGATGGTGCCGTATTTTTCTTCATC-GGGCACCATCACCGGAGAACCTGACCGG
66 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCAGAGAACCTGACCGG
* * * *
5371165 CGGTATTGGGGTTCCGGAGATCGGTAGGGTCGGGGGGTGTGCACACATGATGTGCGATGGGTGCT
131 TGGCATTGGGGTTCC-GAGATCGG-GGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCT
5371230 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
194 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
5371295 GAGCATTTGAGATTTTACATGTTTCCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTT
259 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
5371360 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAAG
324 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * *
5371425 AAAAATACAAGGATCTCGTCTAACAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
389 AAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAA
* *
5371490 TCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAGAACGAGTCGTCTTGCCATGAAACT
453 TCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
5371555 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACGTAG
518 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* *
5371620 AAATATGAAGATGTGCCTAAACCCACCTACGACCCTATCGATCCACGACTTGCGCATCCCGTCTC
583 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAACTTGCGCATCCCGTCTC
**
5371685 TCTGGCCAGCGTAGTGCCCGCCCACCCACCCGCTCGCTCGTTTTGTCGATTGGCTTAGGCATACG
648 TCTGGCCAGCGTAGTGCCCGCCCACCCA------C-CTCGTTTCATCGATTGGCTTAGGCATACG
** *
5371750 GAGTTTGTTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTAGCAGCAAGATCGGCAGCACGCA
706 GAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTAGCAGCAAGATCGCCAGCACGCA
*** * * * * *
5371815 GAGGGGGACCCTTCTGATCCCCGACTTGTACGTTGGTTTTATGGGTTGACTTAGGCATACAGAGT
771 GAGCCCGACCCCTCTGATCCCCGACTCGCACGCTCGTTTTATGGGTTGACTTAGGCATACAGAGT
5371880 TCATTCCCAATCTAA
836 TCATTCCCAATCTAA
* * * * * ** *
5371895 GCATATGGAGTGTATTCCCAGTCTAAGATCAGACT-GGAAAGAGGGTTGC-GCAGCACATGCTGC
1 GCATACGAAGTGTATTCCCAGACTAAGATCAGAATCAGACCGAGGGTTGCGGCAGCACATGCTGG
** * * * *
5371958 ATTCGGGCATGTGCTGGTGTCGCATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGCCAAAA
66 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTC--AG-A--G------
* * ** * *
5372023 AACTTGACCGATGGCATTGACGTTCCGGCGATCAGGGGGGCCGGAGGGGTGCGCACACATGATGT
120 AACCTGACCGGTGGCATTGGGGTTCC-GAGATC-GGGGGGCCGG-GGGGTGTGCACACATGATGT
* *
5372088 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTCA
182 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
5372153 AACCCCCTTAAAGAGCATTTGAGATTTTAGC-GGTTTGC-GACCAGTAGCCATTAAAGTGTCTGA
247 CACCCCCTTAAAGAGCATTTGAGATTTTA-CAGGTTTGCTG-CCAGTAGCCATTAAAGTGTCTGA
* *
5372216 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAAATTTT
310 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
** * * * * *
5372281 TTGTGCATTTCGACAAAAATACAAGGATCACATCTACCAAGTTTGCGGTCAAAACTCCTTCCGAA
375 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCC-AA
* * *
5372346 AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
439 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
5372411 CTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCTTTGTAAGAATTTACAAGCCATAAAAATG
504 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
5372476 GCATTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACAACTT
569 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAACTT
** *
5372541 GCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCTTCCGCCCA-CTCGTTTCATC-AGTTGGCTTA
634 GCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCACCCACCTCGTTTCATCGA-TTGGCTTA
* * *
5372604 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACTGAGGGTTGT-GACAGCAGGATCG
698 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTGTAG-CAGCAAGATCG
* * * * *
5372667 ATCCCTG-ACTTGC-GCATCCCG-CCCCTCTGGTCGGCTGACTGCCCGCACGCTCGTTTCT-TGG
761 ---CCAGCAC--GCAG-AGCCCGACCCCTCTGATC-CCCGACT---CGCACGCTCGTTT-TATGG
** * *
5372728 GTTGACTTAGGCATATGGAGTTCATTCCGAGTCTAA
815 GTTGACTTAGGCATACAGAGTTCATTCCCAATCTAA
* * * * *
5372764 GCCTACGAAGT-TCATTGCCAGACTAAGATC-GAATCAGACCGAGGGTTACGGCAACACATACTG
1 GCATACGAAGTGT-ATTCCCAGACTAAGATCAGAATCAGACCGAGGGTTGCGGCAGCACATGCTG
* * *
5372827 GGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCAGAGAACCTGATCG
65 GGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCAGAGAACCTGACCG
* * *
5372892 GTGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGCTGTGCGCACATGGTGTGCGATGTGTGC
130 GTGGCATTGGGGTTCCGA-GATCGGGGGGCCGGGGGG-TGTGCACACATGATGTGCGATGGGTGC
* *
5372957 TGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
193 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
5373022 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACATTT
258 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
5373087 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
323 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
5373152 AAAAAATACAAGGATCACGTCTACCAAGTTTAATGCCAAAACTCCTTCCAAAAAAGTTTTAAAAA
388 AAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCAAAAAA-TTTTAAAAA
* * *
5373217 ATCTCGAACCGTAAAACGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
452 ATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * *
5373282 TTCACGCGAAGGCTTAAGGGACCAATGTATGAATTTAAAATCCATAAAAATGGCATTGGCATGCA
517 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* *
5373347 GAAATATGAAGATGAGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCT
582 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAACTTGCGCATCCCGTCT
5373412 CTCTG
647 CTCTG
5373417 CCCGCCTTTC
Statistics
Matches: 1324, Mismatches: 159, Indels: 78
0.85 0.10 0.05
Matches are distributed among these distances:
857 53 0.04
858 495 0.37
859 27 0.02
860 1 0.00
861 4 0.00
862 71 0.05
863 1 0.00
864 2 0.00
865 13 0.01
866 9 0.01
867 1 0.00
868 6 0.00
869 110 0.08
870 530 0.40
871 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (850 bp):
GCATACGAAGTGTATTCCCAGACTAAGATCAGAATCAGACCGAGGGTTGCGGCAGCACATGCTGG
GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCAGAGAACCTGACCGG
TGGCATTGGGGTTCCGAGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
AAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCC
CGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAACTTGCGCATCCCGTCTCTCT
GGCCAGCGTAGTGCCCGCCCACCCACCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCAGATCGGACCGAGGGTTGTAGCAGCAAGATCGCCAGCACGCAGAGCCCGACC
CCTCTGATCCCCGACTCGCACGCTCGTTTTATGGGTTGACTTAGGCATACAGAGTTCATTCCCAA
TCTAA
Found at i:5375465 original size:350 final size:348
Alignment explanation
Indices: 5374817--5375474 Score: 894
Period size: 348 Copynumber: 1.9 Consensus size: 348
5374807 CGGTTGGCTT
** * *
5374817 AGGCATACGGAGTTCATTCCAAGTCCAAGATTGGACCGGACCGAGGGTTGTGGCAGCAAGATCGA
1 AGGCATACGGAGTTCATTCCAAGTCCAAGATCAGACCGGACCAAGGATTGTGGCAGCAAGATCGA
* * **
5374882 CAGCACACAGACGGGGACCCGACCGATCCTCGGCTTGCGCTTCCTGCCCCTCTGGCAGGCTAAGC
66 CAGCACACAGACGGGGACCCGACCGATCCTCAGCTTGCGCATCCCACCCCTCTGGCAGGCTAAGC
* * *
5374947 GCCCGCACGCTCTTTTCGTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACATATGAAG
131 GCCCGCACACTCGTTTCGTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACATACGAAG
* * *
5375012 TTCATTCCCAGTCTACGATCGAACCAGACCGGGGGTTGCGACAGCACATGCTGGGCTCGGGCATG
196 TTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATG
*
5375077 TGCTAGTGCCGCATTTTTCTTCGTCGGGCCACCATCGTCGTAGCATCGCAGGAGAACCTGACTGG
261 TGCTAGTGCCGCATTTTTCTTCGTCGGGCCACCATCGTCGGAGCATCGCAGGAGAACCTGACTGG
5375142 TGGCATTGGGGTTCCGGCAATTG
326 TGGCATTGGGGTTCCGGCAATTG
* * * * * * *
5375165 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCAATGATTGTGGCAGCAGGATCGG
1 AGGCATACGGAGTTCATTCCAAGTCCAAGATCAGACCGGACCAAGGATTGTGGCAGCAAGATCGA
* * * * *
5375230 TAGCACGCAGAGGGGGACCC-AGCCGATCC-CTAGCTTGCGCATCCCACCCTTCTGGTC-GGCTG
66 CAGCACACAGACGGGGACCCGA-CCGATCCTC-AGCTTGCGCATCCCACCCCTCTGG-CAGGCTA
* * *
5375292 AGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCTTTCCCAGTCTAAGGATA
128 AGCGCCCGCACACTCGTTTCGT-GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA-CATA
* *
5375357 CGGAGTTCATTTCCAGTCTAAGATC-AGACC-GAACCGAGGGTTACGACAGCACATGCTGGGCTC
191 CGAAGTTCATTCCCAGTCTAAGATCGA-ACCAG-ACCGAGGGTTACGACAGCACATGCTGGGCTC
* * * *
5375420 GGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
254 GGGCATGTGCTAGTGCCGCATTTTTCTTCGTCGGGCCACCATCGTCGGAGCATCG
5375475 TCAGAGCATC
Statistics
Matches: 267, Mismatches: 36, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
347 2 0.01
348 121 0.45
349 38 0.14
350 106 0.40
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (348 bp):
AGGCATACGGAGTTCATTCCAAGTCCAAGATCAGACCGGACCAAGGATTGTGGCAGCAAGATCGA
CAGCACACAGACGGGGACCCGACCGATCCTCAGCTTGCGCATCCCACCCCTCTGGCAGGCTAAGC
GCCCGCACACTCGTTTCGTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACATACGAAG
TTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATG
TGCTAGTGCCGCATTTTTCTTCGTCGGGCCACCATCGTCGGAGCATCGCAGGAGAACCTGACTGG
TGGCATTGGGGTTCCGGCAATTG
Found at i:5377146 original size:26 final size:26
Alignment explanation
Indices: 5377110--5377162 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5377100 GTTGAATTAG
*
5377110 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5377136 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5377162 G
1 G
5377163 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5377997 original size:908 final size:900
Alignment explanation
Indices: 5376228--5380888 Score: 5546
Period size: 908 Copynumber: 5.2 Consensus size: 900
5376218 GTTGACTTAG
* * *
5376228 GCATACGGAGTTCATTCCCAGTCTAGGATCAGACCGGGACCGAGGGTTGTGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
5376293 GCTCGAGCATGTGCTGGTGCCGTATTTTTCTTTGCCGGGGCGCCATTGA-GGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGTATTTTTC-TTGTCGGGGCACCA-TCACGGAGCATCGCCGGAG
* *
5376357 AACCTGACCGACGGCATTGGGGTTCTGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGT
128 AACCTGACCG-CGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * *
5376422 GTGACGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTTTGAGAACTC
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTC
* *
5376486 ACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTATAGTGTCTGAA
255 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
5376551 A-TGCGGACACTTTTTTCAAATGGTCACAAAATCTTTTACATTTCGAGTTTTTAGCTGAATTGTT
320 ATTG-GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
5376615 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAA
384 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
** *
5376680 AAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGT
449 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
5376745 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * ** * *
5376810 GCATTGGCTCATAGAAATATGATGATGTGCCAAAATGCACCTACCACCCTAACGATCCACGGCTT
579 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTT
* * * *
5376875 GCGTAACCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGATCGTTTCGTC
644 GCGCATCCCGTCTCTCTGGCCG-CGTAGTGCCCGCCCGCCCG-CC-CCCCCT-GATCGTTTCATC
* * * * * **
5376940 TGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATCAGACCAAACTGAGGTTTGAGATAG
705 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAG
* ** * * * * * *
5377005 TAGTTTTGGCAGCACGTAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATGCCGCCCCTCTGGT
770 CAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * *
5377070 CGGCTGAGCACCCGCACGCTCCTTTCGTGGGTTGAATTAGGCATACGGAGTTCATTCCTAGTCTA
835 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
5377135 A
900 A
* * **
5377136 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** *
5377201 CACGGGCATGTGCTGATGCCGTATTTTTCTTGATCGGCACACCATCACCGGAGCATCGCCGAAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTG-TCGGGGCACCATCA-CGGAGCATCGCCGGAGA
* * *
5377266 ACCTGACCAGCGGCATTTGGGTTCCGACGATCAGGGGGGGCCAGGGGGTGTGCGCACATAATGTG
129 ACCTGACC-GCGGCATTGGGGTTCCGACGATC-GGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
5377331 CGATGGGTGATGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * **
5377396 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCAAAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5377461 TGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
322 TGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
5377526 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
387 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
5377591 ATTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
452 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
5377656 GCCATGAAACTTCACATGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGTA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
5377721 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCG
582 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCG
* * *
5377786 CATCCCGTTTCTCTGGCCAGCGTAGTGCCTGCCCGCCCGTCCACCCTCCTGCTCGTTTCATCGGT
647 CATCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCCGCCCG-CC-CCC-CCTGATCGTTTCATCGGT
*
5377851 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAG
708 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAG
** * * * * * *
5377916 GATCGATAGCACGTAGAGGGGGACCCGGTCGATCCTCGGCTTACGCATCCCACCCCTCTAGCCGA
773 GATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * * *
5377981 CTGAGCGTCGGCACGCTCGTTTCGTGGTTTCAATTAGGCGTACGGAGTTCATTCCCAGTCTAA
838 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
5378044 GCATACGGAGTTCATTCCCAGTCTATGATCGAACCGGACAGAGGGTTACGGTAGCAAATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
5378109 CTTGGGCATGTGCTGGTGCCGTATTTTTCTTCATTGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTT-GTCGGGGCACCATC-ACGGAGCATCGCCGGAGA
* * * * * *
5378174 ACCTAACCTGCAGCATTTGGGTTTCGATGATCGGGGGGGCCGGGGGGTGGTTTGCGCACATGATC
129 ACCTGACC-GCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGT-G--TGCGCACATGATG
* * * * *
5378239 TGCGATGGTTGCTGGTACGTGGCCCTTATATT-TCTCCCCCATCCCTCATCAAAGCTCGAGAACT
190 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCCTATCCCTCATCAAACCTCGAGAACT
* * *
5378303 CACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCAGA
254 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
5378368 AATTGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTT
319 AATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
5378433 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTCGGGCCAAAAATCCTTCAGAA
384 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
** * ** *
5378498 AAAATTTTAAAAAATCCCAAAACGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGT
449 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
5378563 CTTGCCACGAAACTTCACGTGAAGGTTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
5378628 GCATT-GC-CATGGAGAAATATTAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGC
579 GCATTGGCACAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGC
* * * *
5378691 TTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCG---G-CCGCCC-GCTCGTTTCGTCG
642 TTGCGCATCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCCGCCCGCCCCCCCTGATCGTTTCATCG
* * *
5378751 GTTGGCTTAGTCTTACAGAGTTCATTCCCAGTCTAAGATCAGACCAGA-TCGAGGGTTGTGGCAG
706 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGTGGCAG
* * *
5378815 CAGGATCGACAGCA--CACA-GTGG----GG--GA--CCCGGC---CG-AT----CCCCTCTGGC
770 CAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * * * *
5378861 CGGCTGAGTGCCCGTATGCTCGTTTCGTTGGTTGACTTAGGGATATGGAGCTCATTCCCAGTCTA
835 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
5378926 A
900 A
* * * * *
5378927 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
5378992 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG------CAC----CATCGCCGGAGAA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTT-GTCGGGGCACCATCACGGAGCATCGCCGGAGAA
*
5379047 CCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGGTGTGCGCACATGATGTGC
130 CCTGACC-GCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGC
* **
5379112 GATGGGTGTTGGTACTTGGCCCTTATATTGGTGCCCTATCCCTCATCAAACCTCGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
5379177 CCCCC-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATT
*
5379241 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-TCTCGAGTTTTTAGCTGAATTTTTTTT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGCTGAATTTTTTTG
* * ** *
5379305 TGCATGCCAAAAAAAATAGAAGGTTCACGTCTACCAAGTTTGTTGCCAAAACTCCTTTCGAAAAA
387 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
5379370 ATTTTAAAAAATCCTGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAGAAACGAGTCGTCT
452 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA-AAACGAGTCGTCT
*** * * *
5379435 TGTTGTGAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAAAGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
5379500 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
581 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGC
* * * * *
5379565 GCATCCCGTCTTTCTAGCCGACGTAGTGCCCG---GCCCG--CCCGC--ATCGTTTCGTCAGTTT
646 GCATCCCGTCTCTCTGGCCG-CGTAGTGCCCGCCCGCCCGCCCCCCCTGATCGTTTCATC-GGTT
* * * ** * * *
5379623 GGCTTAGCCATATGGAGTTCATTTCCAG-CTAAGATTGGATCCGGACTGAGGGGATGTTGCCAAG
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCAGACTGA-GGGTTG-TGGC-AG
* * * *
5379687 CAGGGTCAGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGG-TTGTGCATCTCGCCCCTCTGG
770 CAGGATC-GGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* ** * * *
5379751 CTGGCCTGAAGCGCGTGCTTC-CTTG-TTCGTAGGTTGACTTAGGCATACGGGAGTTCATT-CC-
834 CCGG-CTG-AGCGCCCGC-ACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GGAGTTCATTCCCA
5379812 --C--A
895 GTCTAA
* * ** *
5379814 G--T-C-GAG---A-----A-TC-AA-A-C---CAGAATTGAGGGTATGCAGCAAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT-TGCGGC-AGCACATGCTG
* * * *
5379860 GGCTCGGGCATGTGCTGGTGCCACT-TTTTTCTT-TGCTGGGGCACCATCATCGAAGCGTCGCAG
64 GGCTCGGGCATGTGCTGGTGCC-GTATTTTTCTTGT-C-GGGGCACCATCA-CGGAGCATCGCCG
* * * *
5379923 GAGAACCTGACCGACGGCATTGGGGTTACGACGGTC-GGGGGGTCGGGGGGTGTGCGCCCATGAT
125 GAGAACCTGACCG-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
5379987 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
189 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
5380052 CACACCCCCTTAAAGAGAATTTGAGATTTCACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
254 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * * *
5380117 AATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGTGTTTTTTGCTAAATTTTT
319 AATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * *
5380182 TTCTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAATACTCCTTTCAAA
384 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* *
5380247 AAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
449 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
5380312 CTTGCCATGAAACTTCACGCGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
5380377 GCATTGGCACGTAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTT
579 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTT
* * * * *
5380442 ACGCATCCCATCTCTCTGGCCAACGTAGTGCCCGCCCACCCGCCCGCCC-GATCGTTTCATCGGT
644 GCGCATCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCCGCCCGCCCCCCCTGATCGTTTCATCGGT
* * **
5380506 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAG
708 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAG
* * * * *
5380571 GATTGGCAGCACACAGAGGGGGACCCGATCGATCCCCAG-TTGCGCATCTCGCCCCTCTGGCCGG
773 GATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
5380635 CTGAGCGCTCGCACACTCGTTCCGTGGGTTGACTTAGGCATACGGAG----TT--CA---T--
838 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
5380687 ---T-C------C--T---AGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACTTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** ** * ** * * * **
5380737 CTCACGCATGTGCTGGTGCCACATATTTCTTCACCGAGGTACCATCGCTGGAGCATCGCAAGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTT-GTCGGGGCACCATCAC-GGAGCATCGCCGGAGA
* * * * *
5380802 ACCTGACCGACGGCATTGTGGTTCCGACGATCTGGGGGTCGGGGGGGTGTGCGCACATGATGTAC
129 ACCTGACCG-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
5380867 GATGGGTGTTGGTACTTGGCCC
193 GATGGGTGCTGGTACTTGGCCC
5380889 GCATACAGAG
Statistics
Matches: 3256, Mismatches: 394, Indels: 238
0.84 0.10 0.06
Matches are distributed among these distances:
867 1 0.00
868 30 0.01
869 254 0.08
870 280 0.09
871 8 0.00
872 61 0.02
873 17 0.01
874 6 0.00
875 92 0.03
876 59 0.02
877 12 0.00
878 14 0.00
879 270 0.08
880 282 0.09
881 46 0.01
882 7 0.00
883 160 0.05
884 44 0.01
885 20 0.01
886 1 0.00
887 6 0.00
888 2 0.00
889 1 0.00
891 17 0.01
892 25 0.01
893 19 0.01
895 2 0.00
899 3 0.00
900 2 0.00
902 84 0.03
903 2 0.00
904 2 0.00
905 1 0.00
906 5 0.00
907 75 0.02
908 847 0.26
909 39 0.01
910 460 0.14
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCTTGTCGGGGCACCATCACGGAGCATCGCCGGAGAAC
CTGACCGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGCGTAGTGCCCGCCCGCCCGCCCCCCCTGATCGTTTCATCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGCA
GCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5378932 original size:26 final size:26
Alignment explanation
Indices: 5378903--5378953 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5378893 TGACTTAGGG
5378903 ATATGGAGCTCATTCCCAGTCTAAGC
1 ATATGGAGCTCATTCCCAGTCTAAGC
*
5378929 ATATGGAGTTCATTCCCAGTCTAAG
1 ATATGGAGCTCATTCCCAGTCTAAG
5378954 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATATGGAGCTCATTCCCAGTCTAAGC
Found at i:5382415 original size:4 final size:4
Alignment explanation
Indices: 5382399--5382428 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
5382389 TCGGCGTAGT
*
5382399 GCCC GCAC GCCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
5382429 TCGTTTCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.03, C:0.70, G:0.27, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:5382638 original size:26 final size:26
Alignment explanation
Indices: 5382609--5382661 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5382599 GTTAACTTAG
*
5382609 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5382635 GCATGCGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5382661 G
1 G
5382662 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5386250 original size:870 final size:869
Alignment explanation
Indices: 5383866--5388679 Score: 5571
Period size: 871 Copynumber: 5.5 Consensus size: 869
5383856 TTTTATGCCA
* * *
5383866 CTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCG
1 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
* *
5383931 CAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG
66 CAGTCTAAGATCGGATCGGAC-GAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * *
5383996 CCACATTTTTCTTCGCT-GGGGCAGCATCGCCAGAGCATTGCCGGAGAACCTGACCGAC-AGTAT
130 CCACATTTTTCTTC-CTCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCG-CGAGCAT
* * * * * *
5384059 TGGGGTTCTGGTGTTCGGGGGGACGGGGGGGTTGTACGCACACGATGTGCGATGGGTGCTGGTAC
193 TGGGGTTCCGGCGATCGGGGGG-CCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
5384124 TTGGCCCTGATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCA
256 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
5384189 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCA
321 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC-TTTTTCA
* *
5384254 AATGGTCACAAAATATTCTACACTTCGAGATTTTT-GCTGAATTTTTTTGTGCATGCCAAAAAAA
385 AATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
* *
5384318 ATACAAGGATCACGTCTACCAAATTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCCC
449 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * * * *
5384383 GAACCACAAAATTGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCA
514 GAACCGCAAAA-AGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC-TCA
* *
5384448 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGCATTGGCATGATAGAA
577 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-CATAGAA
*
5384513 ATATGAAGATGT-CCT-AACCTACCTACCACCCTATCGATCCACGGGCTTGGCGCATTCCCGTCT
641 ATATGAAGATGTGCCTAAACC-CCCTACCACCCTATCGATCCAC-GGCTT-GCGCA-TCCCGTCT
* * * * * * *
5384576 CTCTGGCTGGCGTAGTGCCTGCCCGTCC--ACCGCTCGTTTCATCGGTT-GCTTAGGCATACGAA
702 CTCTGGCCGGCGTAGTGCCCGCCCGCCCTGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGA
* * * * * *
5384638 G-TCATTCCAAGTCT-AGATTAGACCCCGA-TCGAGGGTTGCAAGCAGCAGGATCGACAGTACGC
767 GTTCATTCCCAGTCTAAGATCAGA-CCAGACT-GAGGGTTGC-GGCAGCAGGATCGGCAGCACGC
* * ** *
5384700 AGA-GGGGACCCAACCGAT-CCCAACTT-CTGGCATCCCGCCA
829 AGAGGGGGACCCGATCGATCCCCGGCTTGC--GCATCCCGCCC
* * * *
5384740 CTATGGCCGACTGAGCGGCCCGCACGCTCATTTCGTGGGTTGACTTTAGGCATACGGGAGTTCAT
1 CTCTGGCCGGCTGAGC-GCCCGCACGCTCGTTTCATGGGTTGAC-TTAGGCATAC-GGAGTTCAT
* * * * * *
5384805 TCCCAGTCTAAGCATCGGACCGAATCGAGGGTTGCGGCAGCACAAAGCTGGG-TTGCGGCATGTG
63 TCCCAGTCTAAG-ATCGGATCGGA-CGAGGGTTACGACAGCAC-ATGCTGGGCTCG-GGCATGTG
* * * * * * * *
5384869 CTGGCTGTCGCATATTTCTTCGTCGGGGCAACCATCGTC-GGGCATC-ACGGAGGACCTGACCG-
124 CTGG-TGCCACATTTTTCTTCCTCGGGGC-ACCATCGCCAGAGCATCGCCGGAGAACCTGACCGC
5384931 GTAGCATTGGGTGGTTCCGGCGATC---GGG--GGGGGGTGTGCGCACATGATGTGCGATGGGTG
187 G-AGCATT-GG-GGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * * * * *
5384991 CTGCTACTTGGCCATTATATTCGCCCCCAATCCCTCATCAAACCTCGAGAATTCACAACCCCTTA
249 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
** * *
5385056 AAGAGCATTTGAGATTTTATGGGTTTGTTTCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
314 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
* *
5385121 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTGGCTGAA-TTTTTTGTGCATGCC-A
379 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
5385184 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAAACTCCTTCCGAAAAAATTTAAAAA
444 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CCAAAACTCCTTCCGAAAAAATTTTAAAA
*** * *
5385249 AATTTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
508 AATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
5385314 CCTCAAGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT
573 -CTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT
* * *
5385379 AGAAATATGAAGATGTGCCTAAACCCCCTACCACCCTATCGACCCACGGCTTACACATCCCGTCT
637 AGAAATATGAAGATGTGCCTAAACCCCCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
5385444 CTCTGGCCGACGTAGTGCCCGCCCG-CCTGCCCGCTCGTTTCGTTAGTTGGCTTAGGCATATGGA
702 CTCTGGCCGGCGTAGTGCCCGCCCGCCCTGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGA
* * * * *
5385508 GTTCATTCCCAGTCTAAGATCAGATCGGA-TCAAAGGTTGCGGTAGCAGGATCGGCAGCACGCAG
767 GTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG
* *
5385572 AGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCC
831 AGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCC
* *
5385611 CTCTGGCCGACTGAGCG-CCGCACGCACGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
1 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * *
5385675 TAGTCTAAGATCGGATCGGATCGTGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGCTGGTG
66 CAGTCTAAGATCGGATCGGA-CGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG
*
5385740 CCACATTTTTCTTCACT-GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCTGCGA-CAT
130 CCACATTTTTCTTC-CTCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACC-GCGAGCAT
* * *
5385803 TGGGGTCCCGGTGATCGGGGGGCCGGGAGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACT
193 TGGGGTTCCGGCGATCGGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* ** * * *
5385868 TGGCCCCTATATTATCCCTCTATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAAAGCAT
257 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
**
5385933 TTGAGATTTTACAGGTTTGCTGCCAGTAGCTGTTAAAGTGTCTAAAATGGGGACACTTTTTCAAA
322 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTCAAA
* *
5385998 TGGTCACAAAATCTTGTAGACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATA
387 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
* * * * *
5386063 CAAAGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTTCGAAAAAATTTTAAAAAATCTCAAA
452 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
*
5386128 CCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTGCACGTG
517 CCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT-CACGTG
* * *
5386193 AAGGCTTAAGGGACCATTGTAGGAATTTACAAGGCATAAAAATGGCATTAGCACATAGAAATATG
581 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATG
* * * **
5386258 AAGATGTGCCTAAACGCACCTACCACCCTATCGATACATGGCTTGCGCATCCTATCTCTCTGGCC
646 AAGATGTGCCTAAAC-CCCCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
** * * *
5386323 GGTATAGTGCCTGCCCGCCCGTCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
710 GGCGTAGTGCCCGCCCGCCC-T--GCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCA
* *
5386388 TTCCAAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA-GGGG
772 TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGG
* *
5386452 ACCCGACCGATCCCTGGCTTGCGCATCCCGCCC
837 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCC
* * *
5386485 CTCTGGCCGGCTGAGCGCCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCC
1 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * *
5386550 CAGTCTAAGATTGGATTGGACCGAGGGTTTCAACAGCACTTGCTGGGCTCGGGCATGTGCTGGTG
66 CAGTCTAAGATCGGATCGGA-CGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * *
5386615 CCAC-TTTTTCTTCATCAGGGCACCTTC-ACAGAGCATCGCCGGAGAACCTGACCTAC-AGCATT
130 CCACATTTTTCTTCCTCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACC-GCGAGCATT
* * *
5386677 GGGGTTCCGACGATCGGGGGG-C-TGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTA
194 GGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * * ** * *
5386740 ACCCGTATAATATCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGACCATTT
259 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * **
5386805 GAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGAGACAAAATTTTCAAAT
324 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC-ACTTTTTCAAAT
*
5386870 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCTAAAAAAAATAC
388 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
* * * * *
5386935 AAGGATCATGTTTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCCCAAAC
453 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
* *
5387000 CGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
518 CGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC-TCACGTGA
***
5387065 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
582 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGA
* *
5387130 AGATGTG-CTGAAACCCACCTACTATCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
647 AGATGTGCCT-AAACCC-CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * *
5387194 GGCGTAGTGCCCGCCCGCCCTCCCGCCCGCTCATTTTGTCGATTGGCTTAGGCATACGGAGTTCA
710 GGCGTAGTGCCCGCCCGCCCT---GCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCA
* * **** * * *
5387259 TTCCCAGTCTAAGATCAGACCAAACTGAAGGTTGTAATAGCAGGATTGGTAGCATGCAGAGGGGG
772 TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGG
* * *
5387324 ACCCGGTCGATCCCCGGCTTACGCATCCTGCCC
837 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCC
* * * * *
5387357 CTCTGGCCGG-TCGAACGCCCGCATGCTTGTTTCATGGGTTCACTCAGGCATACGGAGTTCATTC
1 CTCTGGCCGGCT-GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
* *
5387421 GCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATTGGACAAGACCGAGGGTTACGGCAGCA
65 CCAGTCTAAG-AT-CG--G----------ATC--------G----GA-CGAGGGTTACGACAGCA
* * * * * * * * *
5387486 CATGCTAGGCTCAGGCATGTGCTGGTGTCATATTTTTCTTCCCCGGGGTAGCATTGTCAGAGCAT
103 CATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCCTCGGGGCACCATCGCCAGAGCAT
* * **** * **
5387551 CGCCGAAGAATCTGACCGACGA-CATTTAAATTTCGATGATCGGGGGGCCGGGGGGTGTGCGCAC
168 CGCCGGAGAACCTGACCG-CGAGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCAC
* *
5387615 ATGATGGGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGA
232 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * *
5387680 GAACTCTCACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGTCATTAAAGTG
297 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
5387745 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAG
362 TCTAAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * * * * *
5387810 TTTTTTTATGCATGTCAACAAAAATAAAAGGATCACGGT-TAACAAGTTTGGGTCTAAAACTCCT
426 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC-GTCTACCAAGTTTGGGGCCAAAACTCCT
* * * * * *
5387874 TTCAAAAAAATTTTAAAAAATCCTGAACCACAAAAA-TTTTCAAAAATTGTGAAAAATAGAAAAT
490 TCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTT-AAAAATCGTGAAAAATAGAAAAC
* * *
5387938 GAGTCATCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGTCAT
554 GAGTCGTCTTGCCATGAAA-CTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
***
5388003 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC-ATCGATCC
618 AAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCC-CCTACCACCCTATCGATCC
* * * *
5388067 ATGGCTTGCGC-TCCCATCTCTCTGGCCGACGTAGT----GCCCGCCC-GCCCACTCGTTTCGTT
682 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTGCCCGCTCGTTTCGTT
* * * * *
5388126 GGTTGGCCTAGGCATACGGAGTTCATTCCCAGTCTACGATCGGATCAGACTGAGGGTTGTGGCAG
747 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAG
* * * * * * *
5388191 TAGGATCGACAGCACACAGAGGGTGACCCGATCGATTCCTGGCTTGCGCATCCCACCC
812 CAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCC
* * * * *
5388249 CTCTAGTCGGCTGAACGCCCGCACACTCATTTTGTGGGTTGACTTAGGCATTGGAGATCATTCCC
1 CTCTGGCCGGCTGAGCGCCCGCACGCTC---------G-T---TT---CA-TGG-G----TT--G
* * * * *
5388314 AATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTATGGCAGCAGA
42 ACT-TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC-GAGGGTTACGACAGCACA
* *
5388379 TGCTGGGCTCGGGCATGTGCTGGTGGCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATC-
105 TGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCCTCGGGGCACCATCGCCAGAGCATCG
** * ** *
5388443 CCAAAGAACCTGACAGGCG-GCCCTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCGC
170 CCGGAGAACCTGAC-CGCGAGCATTGGGGTTCCGGCGATC-GGGGGGCC-GGGGGGTGTGCGCAC
* *
5388507 ATGATGTGGGAT-GGTGCTAGTAC-TGGCCCTTATATTGG-CCCCTATCCCGTCAATCAAACCT-
232 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC-TC-ATCAAACCTC
5388568 GAGAA-TCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGGTTTGCTGCCAGTAGCCATTAAA
295 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC-AGGTTTGCTGCCAGTAGCCATTAAA
* * *
5388632 GTGTCTGAAATCGAGACACTCTTTTCAAATGGTCACAAAATCTTGTAC
359 GTGTCTAAAATGGGGACACT-TTTTCAAATGGTCACAAAATCTTGTAC
5388680 TTTTGGGTCC
Statistics
Matches: 3394, Mismatches: 416, Indels: 244
0.84 0.10 0.06
Matches are distributed among these distances:
863 19 0.01
864 26 0.01
865 36 0.01
866 33 0.01
867 23 0.01
868 43 0.01
869 227 0.07
870 386 0.11
871 719 0.21
872 176 0.05
873 92 0.03
874 221 0.07
875 222 0.07
876 12 0.00
877 20 0.01
878 29 0.01
879 40 0.01
880 25 0.01
881 17 0.01
886 2 0.00
889 41 0.01
890 115 0.03
891 100 0.03
892 157 0.05
893 1 0.00
894 1 0.00
895 1 0.00
896 8 0.00
898 43 0.01
899 16 0.00
900 65 0.02
901 26 0.01
902 399 0.12
903 8 0.00
905 2 0.00
908 2 0.00
909 3 0.00
910 1 0.00
913 1 0.00
914 2 0.00
915 2 0.00
916 5 0.00
917 27 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (869 bp):
CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATCGGATCGGACGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
CACATTTTTCTTCCTCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCGCGAGCATTGG
GGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTCAAATGGT
CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGC
AAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTCACGTGAAGGC
TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGAT
GTGCCTAAACCCCCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
GTGCCCGCCCGCCCTGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
TAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCG
ATCCCCGGCTTGCGCATCCCGCCC
Found at i:5387434 original size:26 final size:26
Alignment explanation
Indices: 5387404--5387456 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5387394 GTTCACTCAG
* * *
5387404 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
5387430 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
5387456 G
1 G
5387457 ATTGGACAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:5388547 original size:902 final size:893
Alignment explanation
Indices: 5386532--5388679 Score: 2593
Period size: 902 Copynumber: 2.4 Consensus size: 893
5386522 GTTGACTTAG
* ** *
5386532 GCATACGAAGTTCATTCCCAGTCTAAGATTGGATTGGACCGAGGGTT-TCAACAGCACTTGCTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTAT-GGCAGCACATGCTGG
* * *
5386596 GCTCGGGCATGTGCTGGTGCCAC-TTTTTCTTCATCAGGGCACCTTC-ACAGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGACAGAGCATCGCCGAAG
* * * *
5386659 AACCTGACCTACAGCATTGGGGTTCCGACGATCGGGGGG-C-TGGGGTGTGCGCACATGATGTGC
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGG
* ** *
5386722 GATGGGTGCTGG--TACTTAACCCGTATAATATCCCCCTATCCCTCATCAAACCTTGAGAACTCA
195 GATGGGTGCTGGCTTAATTGGCCC---T-ATATCCCCCTGTCCCTCATCAAACC-TGAGAACTCA
* * * *
5386785 CACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAA
255 CACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
**
5386850 TGGAGACAAAATTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
320 TGGAGACACTATTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
5386915 GTGCATGCTAAAAAAAATACAAGGATCATGTTTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
385 ATGCATGCTAAAAAAAATAAAAGGATCACGGTTAACAAGTTTGGGGCCAAAAATCCTTCCAAAAA
** * *
5386980 AATTTAAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
450 AATTTAAAAAAATCCCAAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCT
* *
5387045 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
515 TGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCATAAAAATGGC
* *
5387110 ATTGGCATGCAGAAATATGAAGATGTGCTGAAACCCACCTACTATCCTATCGATCCACGGCTTGC
580 ATTGGCATGCAGAAATATGAAGATGTGCTGAAACCCACCTACCATCCCATCGATCCACGGCTTGC
* * * *
5387175 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCCCGCCCGCTCATTTTGTCGATTGG
645 GCATCCCATCTCTCTGGCCGACGTAGT---CGCCCG--C-CCCGCCCACTCATTTCGTCGATTGG
* *
5387240 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAAGGTTGTAATAGCAGGAT
704 CCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAAGGTTGTAACAGCAGGAT
* ** ** * ** *
5387305 TGGTAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGGTCG
769 CGACAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCACCCCTCTAGCCGGTCG
** ** * * *
5387370 AACGCCCGCATGCTTGTTTCATGGGTTCACTCAGGCATACGGAGTTCATTCGCAGTCTAA
834 AACGCCCGCACACTCATTTCATGGGTTCACTCAGGCATACGGAGATCATTCCCAATCTAA
* * * *
5387430 GCATACGAAGTTCATTCCCAATCTAAGATTGGA-CAAGACCGAGGGTTACGGCAGCACATGCTAG
1 GCATACGAAGTTCATTCCCAGTCTAAGATTGGATC-GGACCGAGGGTTATGGCAGCACATGCTGG
* * * ** * * * *
5387494 GCTCAGGCATGTGCTGGTGTCATATTTTTCTTCCCCGGGGTAGCATTGTCAGAGCATCGCCGAAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGACAGAGCATCGCCGAAG
* * **** * *
5387559 AATCTGACCGACGACATTTAAATTTCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATG-GG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGG
*
5387623 CGATGGGTGCTGG--TACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTC
195 -GATGGGTGCTGGCTTAATTGGCCC-TATA-T--CCCCCTGTCCCTCATCAAACCT-GAGAACTC
* * *
5387686 TCACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAA
254 ACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
5387751 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTTT
319 ATGGAGACACTATTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
5387816 TATGCATG-TCAACAAAAATAAAAGGATCACGGTTAACAAGTTTGGGTCTAAAACTCCTTTCAAA
384 TATGCATGCT-AAAAAAAATAAAAGGATCACGGTTAACAAGTTTGGGGCCAAAAATCCTTCCAAA
* ** * *
5387880 AAAATTTTAAAAAATCCTGAACCACAAAAA-TTTTCAAAAATTGTGAAAAATAGAAAATGAGTCA
448 AAAATTTAAAAAAATCCCAAACCACAAAAAGTTTT-AAAAATCGTGAAAAATAGAAAACGAGTCA
*
5387944 TCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGTCATAAAAAT
512 TCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCATAAAAAT
*
5388009 GGCATTGGCATGCAGAAATATGAAGATGTGCCT-AAACCCACCTACCA-CCCATCGATCCATGGC
577 GGCATTGGCATGCAGAAATATGAAGATGTG-CTGAAACCCACCTACCATCCCATCGATCCACGGC
* * *
5388072 TTGCGC-TCCCATCTCTCTGGCCGACGTAGT-GCCCG-CCCGCCCACTCGTTTCGTTGGTTGGCC
641 TTGCGCATCCCATCTCTCTGGCCGACGTAGTCGCCCGCCCCGCCCACTCATTTCGTCGATTGGCC
* * * * * ** *
5388134 TAGGCATACGGAGTTCATTCCCAGTCTACGATCGGATCAGACTGAGGGTTGTGGCAGTAGGATCG
706 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAAGGTTGTAACAGCAGGATCG
* * * * *
5388199 ACAGCACACAGAGGGTGACCCGATCGATTCCTGGCTTGCGCATCCCACCCCTCTAGTCGG-CTGA
771 ACAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCACCCCTCTAGCCGGTC-GA
** * * *
5388263 ACGCCCGCACACTCATTTTGTGGGTTGACTTAGGCAT-TGGAGATCATTCCCAATCTAA
835 ACGCCCGCACACTCATTTCATGGGTTCACTCAGGCATACGGAGATCATTCCCAATCTAA
* * * *
5388321 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTATGGCAGCAGATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTATGGCAGCACATGCTGGG
* * * *
5388386 CTCGGGCATGTGCTGGTGGCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATC-CCAAAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGACAGAGCATCGCCGAAGA
* * ** * *
5388450 ACCTGACAGGCGGCCCTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCGCATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * * *
5388515 GGAT-GGTGCTAG--T-ACTGGCCCTTATATTGGCCCCTATCCCGTCAATCAAACCTGAGAA-TC
194 GGATGGGTGCTGGCTTAATTGGCCC-TATA-T-CCCCCTGTCCC-TC-ATCAAACCTGAGAACTC
5388575 ACACCCCCTTAAAGAGCATTTGAGATTTTACAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
254 ACACCCCCTTAAAGAGCATTTGAGATTTTA-AAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
5388640 AATCGAGACACTCTTTTCAAATGGTCACAAAATCTTGTAC
318 AATGGAGACACTATTTTCAAATGGTCACAAAATCTTGTAC
5388680 TTTTGGGTCC
Statistics
Matches: 1069, Mismatches: 159, Indels: 52
0.84 0.12 0.04
Matches are distributed among these distances:
889 41 0.04
890 114 0.11
891 146 0.14
892 178 0.17
893 2 0.00
896 5 0.00
898 74 0.07
899 19 0.02
900 68 0.06
901 28 0.03
902 392 0.37
903 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTATGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGACAGAGCATCGCCGAAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGGG
ATGGGTGCTGGCTTAATTGGCCCTATATCCCCCTGTCCCTCATCAAACCTGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGA
CACTATTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAT
GCTAAAAAAAATAAAAGGATCACGGTTAACAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTA
AAAAAATCCCAAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAT
GAAACCTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAGAAATATGAAGATGTGCTGAAACCCACCTACCATCCCATCGATCCACGGCTTGCGCATCC
CATCTCTCTGGCCGACGTAGTCGCCCGCCCCGCCCACTCATTTCGTCGATTGGCCTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAAGGTTGTAACAGCAGGATCGACAGCACACA
GAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCACCCCTCTAGCCGGTCGAACGCCCGCACA
CTCATTTCATGGGTTCACTCAGGCATACGGAGATCATTCCCAATCTAA
Found at i:5392300 original size:26 final size:26
Alignment explanation
Indices: 5392270--5392322 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5392260 GTCGACGTAG
* *
5392270 GCATATGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
5392296 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACGGAGTTCATTCCCAGACTAA
5392322 G
1 G
5392323 ATCTGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:5393998 original size:877 final size:876
Alignment explanation
Indices: 5388926--5399229 Score: 12663
Period size: 902 Copynumber: 11.7 Consensus size: 876
5388916 TTCGCCGGGA
* * *
5388926 GGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTTCTTGGCCCTTATATTGGTCCCCTATCCCT
1 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * * *
5388991 CATCAAACCTTGCGAACTCACACCCCCTTAAAGCGCATTTGAGATTTTACAAGTTTGCTGCCAGT
66 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * *
5389056 AGGCATTAAAGTGTCTGAAATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
131 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * * *
5389121 GTTTTTAGCTGATTTTTTTTTTGCATGCCAAGAAAAGTACAAGGATCACATCTACCAAGTTT-GG
196 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * * *
5389185 GCCAAAAACTTCTTTCAAAAAAATTTTAAAAAATCCTG-ACCCCAAAAAGTTTCGAAAATCTTGA
261 GCC-AAAAC-TCCTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA
* *
5389249 AAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAA
324 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
*
5389314 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
389 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAACTACCA
* * * * *
5389379 CCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCTGGCATAATGCCCGCCCGCCCGCCCG
454 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCGCCCGCCCG
* * ** *
5389444 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTATAAGATCAGAGCAGAC
518 CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGAC
* * * * * **
5389509 TGAGGGTTGCGGTAGAAGAATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
583 CGAGGGTTGCGATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCA
* * * * *
5389574 T-CCTCCCCTCTAGCCGGCTGAGCGCCCGTACACTCGTTTTGTGGGTTGACTTAGGCATACGGAG
648 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * * * *
5389638 TTAATTCCCAGTCTAAGATTG-GACCGGACTGAGGATTGCGACAGCACATGCTGGGCTCGGGCAT
713 TTCATTCCCAGTCTAAGATCGAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAT
** * *
5389702 GTGCTGGTGCCGCATTTTTCTTCGAAGGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACCG
778 GTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCG
*
5389767 ACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGG
843 ACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GG
* * * * **
5389802 GGGGTGTGCGCACCTGATGTGTGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCCATCTTT
1 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
5389867 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
66 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
5389932 AGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGA
131 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
5389997 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTTCCAAGTTTGGG
196 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * *
5390062 GCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAGCCACAAAAAGTTTCAAAAATCTTGAA
261 GCCAAAACTCCTTC-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAA
* *
5390127 AAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAAT
325 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
** *
5390192 TTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
390 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAACTACCAC
* * *
5390257 CCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGTCGACGTATTGCCTGCCCGCCCGCCTGC
455 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G--TGCCCG-CCGCCCGC
* * * *
5390322 CCGTCCGCTCGTTTCATCGGTTGGCTTTGGCATACGAACTTCATTCCCAGTCTAAGATTGGACCA
515 CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCA
** * * ** *
5390387 GATTGAGGGTTG-TAGTAGCAGGATCGACAGCACATAGAGGGGGACCCGGTCGATCCCCGACTTG
580 GACCGAGGGTTGCGA-TAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTG
* **
5390451 CGCATCCCGCCCTTCTGGCCGATTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
644 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
5390516 -GAGGTTCATTCCCAGTTTAACCATACGGAGTTGATTCTCAGTCTAAGATCGGACCAGACCGAGG
709 GGA-GTTCATTCCCAG--T---C-TA---A---G------A-TC---GA---GACCAGACCGAGG
* * *
5390580 GTTGCGACAGCACATGGTAGGCTCGGGCATGCGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCA
748 GTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCA
** * * * * *
5390645 TCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTTCGATGATTGGGGGGGTCGA
813 TCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
* * *
5390709 GGGGTGTGCGCACATAATGTGCGATGGGCGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCT
1 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
5390774 CATCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGT
66 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
5390839 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGA
131 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
5390904 GTTTTTAGCTGACTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAGGTTTGGG
196 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * ** *
5390969 GCGAAAACTCTTTCCGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATTGTGAA
261 GCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAA
* *
5391034 AAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAAT
325 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * *
5391099 TTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAAGCCACCTACCAC
390 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAACTACCAC
* *
5391164 CCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTA-----------CTGCCCGCC
455 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCGCCCGCC
* * * *
5391218 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGTGTTTATTCCCAGTCTAAGATCGGACCAGATCG
520 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCG
* * *
5391283 AGGGTTGTGGTAGCAGGA-CTGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCTGCTTGCGCAT
585 AGGGTTGCGATAGCAGGATC-GGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCAT
* * * * * *
5391347 CCTGCCCCTCTGGCCGGTTGAGCACCTGCACGCTCGTTTTGTGGGTTGACTTAGGCATGCGGAGT
649 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * * *
5391412 TCATTCCCAGTCTAAGATCG-GATCGGACCGAGGGTTACGACAGCACATGCTAGGCTTGGGCATG
714 TCATTCCCAGTCTAAGATCGAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATG
* *
5391476 TGCTGGTGCCGCATTTTTCTTCGCCGAGG---CA----C----CATCGTCGGAGAACCTGACAGA
779 TGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGA
5391530 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
844 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
*
5391563 GGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
1 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
5391628 CATCAAACCTCGAGGATTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
66 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
5391693 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
131 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
5391758 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAC-AAAATACAAGGATCATGTCTACCAGGTTTGGG
196 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * *
5391822 GCCAAAACGCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTC-AAAATCATGA
261 GCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG-TTTCAAAAATCGTGA
* *
5391886 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCATAAGGGACCATTGTGTGAA
324 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * * * * *
5391951 TTTACAAGGCATAAAAATGGGATCGACA-GATAGAAATATGAAGATGTGCTTAAACCCACCTACC
389 TTTACAAGCCATAAAAATGGCATTGGCATG-CAGAAATATGAAGATGTGCCTAAACCCAACTACC
* * *
5392015 ACCCTATCGATCCACGGATTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCTACCC
453 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCG----CCC
* * * * * **
5392080 GCCCACCCGCTCGTTTCGTCGATTGGCTTACGCATACGGAGTTCATTCCCGGTCTAAGATCAGAC
513 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGAC
** * * * * * * *** ** *
5392145 TGGATCGAGGGTTGCGGTCGAAAGATTGGCAGCACGCAGAGGGGGAGTTGACCGATCCCCGACTT
578 CAGACCGAGGGTTGCGATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTT
* * * *
5392210 GCGCATCCGGCCCCTCTGGCCGGCTGAGTGCCCGCACACTCATTTCATGGGTCGACGTAGGCATA
643 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC----GT----G--GG--T-
* *
5392275 TGGAGTTCATTCCCAGCCTAAGCATACGGAGTTCATTCCCAGACTAAGATC-TGACCAGACCGAG
695 T-GA---C-TT---AG-----GCATACGGAGTTCATTCCCAGTCTAAGATCGAGACCAGACCGAG
* * * * *
5392339 GGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGTCACT
747 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
* * * * * * ** **
5392404 GTTGCCGGAGCATCATCAGAGAACCCGACCGGTGGCATTGGGGTTCCGGTGATC-GGGGGGCCGG
812 ATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
5392468 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
1 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
5392533 CATCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGT
66 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * * *
5392598 AGCAATTAAAGTGTCTGAAATGGGGACACTTCTTTCAAATGGTCACAAAATATTGTACACTTCCA
131 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * * *
5392663 GTTTCTAGCTGAATTCTTTTATGCATGCCAACAAAAATACAAGGATCACGTATACTAAGTTTGGG
196 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * *
5392728 GCCAAAACACCTTCCGAAAAAATTTGAAAAAA-CCTGAACCGCAAAAAGTTTCAAAAATCATGAA
261 GCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAA
*
5392792 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAAT
325 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
** * * *
5392857 TTACAAGGGATAAAAATTGG-AATGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCCACCA
390 TTACAAGCCATAAAAA-TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAACTACCA
* * * *
5392921 CCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCACCCGCCCTCCCG
454 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-GCCGCCCGCCCG
* * * * * * *
5392986 CTCGCTCGTTTCGTTGGTTGGCTTTGGCATACGGAGTTCATTCCCAGTCTAAGTTTGGATCGGAC
518 CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGAC
* * * ** * ** * *
5393051 CAAGAGTTGTGGCAGCAGGATCGGTAGCACGCAGAGACGGACCCGGTCGATCTCCAGCTTGCGCA
583 CGAGGGTTGCGATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCA
* * * *
5393116 TCCCACCCTTCTGGCCGACTGAGCGCCCGCAGGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
648 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* **
5393181 TTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCAT
713 TTCATTCCCAGTCTAAGATCGAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAT
* * * ** * *
5393245 GTGCTGGTTCCACATTTTTCTTCGCCGGGGCACCATCGCCTTAGCATCGTCGGAGAACTTAACCG
778 GTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCG
* * * * *
5393310 GCGGCATTAGGGTTCCAACGATCGGAGGGGCAGG
843 ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
* * * *
5393344 GGGTGTGTGTGCACATGATTTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCC
1 GGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
5393409 TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAG
65 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
5393474 TAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTAAAATGGTCACAAAATCTTGTACACTTCG
130 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
5393539 AGTTTTTAGCTGAATGTTTTTGGGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
195 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * *
5393604 GGCCAAAAATCGTTCGAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTCCAAAAATCGTGA
260 GGCCAAAACTCCTTCG-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA
** * *
5393669 AAAATAGAAAATC-AGTCACCTTGCCATGAAACTTCACGTGAACGCTTAAGCGACCATTGTATGA
324 AAAATAGAAAA-CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
5393733 ATTTACAAGCTATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAACTACC
388 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAACTACC
* * * *
5393798 ACCCTATCGATCCATGGCTTACGAATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGACCCTCCC
453 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCG-CCCGCCC
* ***
5393863 GCCCGCTCGTTTCTTCGGTTGGCTTAGGCATACGGAG-TCATTCCCAGTCTAAGATTGGATTGGA
517 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGA
* * * * * * * * * * *
5393927 CCAAGGGTTGCGACAGCAAGATCGGCAGCACGCAAAGGGGGACCCAGCCAATTCGCGGCTTACGT
582 CCGAGGGTTGCGATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGC
* * *
5393992 ATCCCACCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAA
647 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * ** * * *
5394057 GTTCATTCCCAGTCTAAGATC-AGATCGGACCGAGGGTTGCGGTACCACATGCTGGGCTTGGGAA
712 GTTCATTCCCAGTCTAAGATCGAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
** ** ** *
5394121 TGTGCTGGTATCATATTTTTCTTCGCCAAGGCACCACCGTCGGAGCATCGTCGGAGAACCTGACC
777 TGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
** * * * *
5394186 GGTGGCATTAGGGTTCCAACGATCGAGGGGGTC-G
842 GACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
*
5394220 GGGG-GTGCGCACATGATGTGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCT
1 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
5394284 CATCAAACCTCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGT
66 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
5394349 AGCCATTAAACTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGA
131 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * **
5394414 GTTTTTAGCTGAA-TTTTTTGTGCAAGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGCA
196 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * *
5394478 GCCAAAACCCCTTCTGAAAAAATTTTAAAAAATCCTGAATCGTAAAAAGTTTCAAAAATCATGAA
261 GCCAAAACTCCTTC-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAA
* *
5394543 AAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAAT
325 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
5394608 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC-ACTACCAC
390 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAACTACCAC
* *
5394672 CCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTG--C-CCG-CCGCCCGCC
455 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCGCCCGCC
** * *
5394733 CGCTCGTTTCATCAATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACTG
520 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCG
* * * * * * *
5394798 AGGGATGCGATAGCAGGATCGACAACACGCAGAGGGTGACCCGGTCGATCCCCGACTTACCCATC
585 AGGGTTGCGATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATC
* * * * *
5394863 CCACCCCTCTAGCCGGCTGAGCGCCCGGACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTT
650 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* *** * * *
5394928 CATTCCCAGTCAAAGATC-AGATTGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCA-GT
715 CATTCCCAGTCTAAGATCGAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGT
** * * *
5394991 GCTGGTGCCATATTTTTC-TCGCTGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGAA
780 GCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGAC
* *
5395055 AGCATTGGGGTTCCGACAATC-GGGGGGCCGGG
845 GGCATTGGGGTTCCGACGATCGGGGGGGCC-GG
*
5395087 TGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCC
1 -GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
5395152 TCGTCAAACCTCGAGAACTCACACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTACCAG
65 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
5395217 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCG
130 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * *
5395282 AGATTTTAGCTGAAATTTTTTATGCATGCCAACAAAAATACAACGATCACGTCTACCAAGTTTGG
195 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * *
5395347 GGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGT-
260 GGCCAAAACTCCTTC-GAAAAAATTTT-AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTG
*
5395411 AACAAATAGAAAACGAGTCGTCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATG
323 AA-AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * * * *
5395476 AATTTACAAGCCATAAAAATGGCATTAGCATGTAGAAATATTAAGATATACCTAAA-CCAACCTA
387 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAA-CTA
* * * *
5395540 CCACCCTATCGATCCACGGCTCGTGCATCTCGTCTCTCTGGCCGACATAGTG--C-CCGCCCGCC
451 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCGCC
* * * * * *
5395602 CGTCCACTCGTTTCATCGGTTGGCTTAGGTATATGGAGTTCATTCCCAGTCTAAGATCGGACCGG
516 CGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAG
* * ** * ** * *
5395667 ATCGAGGGTTGTGGCAGTAGGA-CTGGCAGCACATAGAAGGGGACCCGATC-AGTCCCCGGCTTG
581 ACCGAGGGTTGCGATAGCAGGATC-GGCAGCACGCAGAGGGGGACCCGGTCGA-TCCCCGGCTTG
* ** * * * * *
5395730 CGCATCCCGCCCTTCTGGCTAGCGGAGCACCTGTACGCTCGTTTCGTGGATTGACTTAGGCATAC
644 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
5395795 GGAGTTCATTCCTAGTCTAAGCACACGGAGTTCATTCCCAGTCTAAGATTGCACTAGACCGAGGG
709 GGAGTTCATTCCCAGTCT------A---AG---A-T--C-G----AGA---C-C-AGACCGAGGG
* * *
5395860 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT
749 TTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCAT
** * ** * * *
5395925 TATCGGAGTATCG-CAGTCGAACCTGACC-AGCGGCATTGGGGTTTCGGCGATCGGGGGGGCCAG
814 CGTCGGAGCATCGTC-GGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
*
5395988 GGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
1 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
5396053 CATCAAACCTCAAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
66 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
5396118 AGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAA
131 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
5396183 TTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGG
196 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * * *
5396248 ACTAAAACCCCTTTTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT-AGAAAATCATGA
261 GCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA-AAAATCGTGA
*
5396312 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGGA
324 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * *
5396377 TTTGCAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTACCTAAACCCAACTACCA
389 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAACTACCA
* * * * *
5396442 CCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCT-GCTCGACGTAGTGCCTGTCGGCCCGTCT
454 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC-CGACGTAGTGCCCG-CCGCCCGCCC
* ** * * *
5396506 GCTCGCTCGTTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATTGGATCAGA
517 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGA
* * * * * * * * *
5396571 CTGAGGGTTACGGTAGCAGGATCGGCAGCACGTAAAGGGGGACCCGGTCTATCCCCAGCTAGGGC
582 CCGAGGGTTGCGATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGC
** * * * *
5396636 ATCCCGCCCCTCTGGCCGGCTGAGCGCCTACACGCTCATTTTGTGGCTTAACTTAGGCATACGGA
647 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
*
5396701 GTTCATTCCCAGTCTAAGCTTACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTG
712 GTTCATTCCCAGTCTAAG-AT-C-GAG---A----C---C--AGA-C---C--G----AGGGTTG
* * * * * * *
5396766 CGACAGCACATGTTGGGCTCAGGCATTTGCTGGTGTCGTATTTTTCTTCGTCGAGGCACCATCGT
752 CGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGT
* * * *
5396831 CGGAGCATCGCCAGAGAACTTGACCGGA-GGCATTGGGGTTCCGACGAT-TGGGGGGCCGG
817 CGGAGCATCGTCGGAGAACCTGACC-GACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
* * * * *
5396890 GGGGTGTGCGCACATGATGTGCAATGGGTTCTGGTACTCGGCCCTTACATTGGCCCCCTGTCCCT
1 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
5396955 CATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGGTGCCAGT
66 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
5397020 AGCCATTAAAGTGTCTGAAATGGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTTGA
131 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * **
5397085 GTTTTTAGCTGAATTTTTTTGGGCATGCCAACAAAAATACAAGGATCACATCTATTAAGTTTGGG
196 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* ** *
5397150 GCCAAAACCCCTTCTGAAAAAATTTTAAAAAATCCTTAACCGCAAAAAGTTTTAAAAATCGTGAA
261 GCCAAAACTCCTTC-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAA
*
5397215 AAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
325 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
5397280 TTAGAAGCCATAAAAATGGCATTGGCGCAT-CA-AAATATGAAGATGTGCCTAAACCCAACTACC
390 TTACAAGCCATAAAAATGGCATT-G-GCATGCAGAAATATGAAGATGTGCCTAAACCCAACTACC
* * *
5397343 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTGGTGCCCGCCCACCCGCCC
453 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCGCCCGCCC
* * * * * *
5397408 TCCCACTCGTTTCGTCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTAGACCAGA
517 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGA
* * * ** * * * *
5397473 CTGAGGGTTACGACAATAGGATCGGCAGTACGCAGAGGGGGACCCGGTCGATCCCCAGCTTGTGT
582 CCGAGGGTTGCGATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGC
* * *
5397538 ATCCCGCCCCTCTGGCTGG-TCGGGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
647 ATCCCGCCCCTCTGGCCGGCT-GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
5397602 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
711 AGTTCATTCCCAGTCTAAG-AT-C-GAG---------A--C------C--A---GACCGAGGGTT
** *
5397667 GCGACATG-ACATGCTGGGCTCGGGCATGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATC
751 GCGACA-GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC
* *
5397731 G-CTGGAGCATCGTCGGAGAACCTGACTGACGGCATGGGGGTTCCGACGATC------G--GG
815 GTC-GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
*
5397785 GGGGTGTGCGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
1 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
5397850 CATCAAACCTCGAGAACTCACACCCCCTTAAAGTGCCTTTAAGATTTTACAGGTTTGCTGCCAGT
66 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
5397915 AGCCATTAAAGTGTCTGAAATGGGGACACTTGTTTCAAATGGTTACAAAATCTTGTACACTTCGA
131 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
5397980 CTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
196 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * **
5398045 GCCAAAACTCCTTCTGAAAATATTTTAAAAAATCTCGAACCACAAAAAGTTTTGAAAATCGTGAA
261 GCCAAAACTCCTTC-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAA
* * *
5398110 AAATAGAAAACGAGTCGTCTTGCCATTAAACTTTACGTGAAGGCTTAAAGGACCATTGTATGAAT
325 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
5398175 TTACAAGACATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA-CCAACCTACCA
390 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAA-CTACCA
* * * * * *
5398239 CCCTATCGATCCATGGCTTGGGCATCCCATCTCTCTAGCCGGCGTAGTG--C-CCGCCCACCCGC
454 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCGCCCGC
* ** * *
5398301 CCGCTCATTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
519 CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACC
* * * * * * *
5398366 AAGGGTTGC-AGTAGCAGGATCGACAGCAAGCAGAGGGGGACCCGATCGCTCCCTGGCTTGCACA
584 GAGGGTTGCGA-TAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCA
* * *
5398430 TCCCGCCCCCCTTTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCGTACGG
648 TCCCG--CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* *
5398495 AGTTCATTCCCATTCTAAGATC-AGACCGGACCGAGGGTTGC-AGCAGCACATGCTGGGCTCGGG
711 AGTTCATTCCCAGTCTAAGATCGAGACCAGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGG
* * **
5398558 CATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCGCCAGG-GCATCACCGGAGAACCTG
775 CATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC-GGAGCATCGTCGGAGAACCTG
* *
5398621 ACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCCAG
839 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
* *
5398659 GGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCT
1 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
5398724 CATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
66 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * *
5398789 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCATAAAATCTTATACACTTCGA
131 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * * *
5398854 CTTTTTAGCCGAATTTTTTTGTGCATGCCACCAAAAATACTAGGATCACGGCTACCAAGTTTGGG
196 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
** * *
5398919 GCCAAAACTCCTTCCGAAAAAATTAAAAAAAATCCCGAACGGCAAAAAGTTTCAAAATTCGTGAA
261 GCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAA
**
5398984 AAATAGAAAACGAGTCCACTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG--T-AA-
325 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
5399045 -T----GGCAT-----TGGCA----CA--CAGAAATATGAAGATGTGCCTAAACCC-ACTGACCA
390 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAACT-ACCA
* * * *
5399093 GCCTATCGATCCACGACTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCGACCCGCCCG
454 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCG-CCCGCCCG
* ** * * *
5399158 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTCAGATCGGACCGGAC
518 CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGAC
5399223 CGAGGGT
583 CGAGGGT
5399230 CGTGGCAGCA
Statistics
Matches: 8235, Mismatches: 958, Indels: 488
0.85 0.10 0.05
Matches are distributed among these distances:
852 1 0.00
853 244 0.03
854 338 0.04
855 2 0.00
856 3 0.00
857 3 0.00
858 74 0.01
860 5 0.00
862 2 0.00
865 76 0.01
866 109 0.01
867 119 0.01
868 194 0.02
869 343 0.04
870 74 0.01
871 143 0.02
872 111 0.01
873 388 0.05
874 543 0.07
875 142 0.02
876 274 0.03
877 734 0.09
878 229 0.03
879 5 0.00
880 3 0.00
881 131 0.02
882 66 0.01
883 4 0.00
884 2 0.00
885 3 0.00
886 5 0.00
887 5 0.00
888 4 0.00
889 5 0.00
890 8 0.00
891 307 0.04
892 6 0.00
893 78 0.01
894 15 0.00
895 546 0.07
897 5 0.00
898 3 0.00
899 224 0.03
900 289 0.04
901 199 0.02
902 769 0.09
903 280 0.03
904 11 0.00
905 416 0.05
906 99 0.01
907 461 0.06
908 129 0.02
909 3 0.00
911 1 0.00
912 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (876 bp):
GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
GCCAAAACTCCTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAA
AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAACTACCACC
CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCGCCCGCCC
GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGA
GGGTTGCGATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCC
CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCGAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTG
CTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACG
GCATTGGGGTTCCGACGATCGGGGGGGCCGG
Done.