Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 4 of 129
Found at i:787777 original size:26 final size:26
Alignment explanation
Indices: 787732--787784 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
787722 GTTGACTTAG
787732 GCATACGAAGTACATGCCCAGTCTAA
1 GCATACGAAGTACATGCCCAGTCTAA
* * *
787758 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTACATGCCCAGTCTAA
787784 G
1 G
787785 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTACATGCCCAGTCTAA
Found at i:789938 original size:877 final size:875
Alignment explanation
Indices: 782549--790437 Score: 9048
Period size: 903 Copynumber: 9.0 Consensus size: 875
782539 TTGACGTGAA
* * * * ** *
782549 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCACCGTCGGAGCATCATCGGA
1 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGCCACCATCGCCGGAGCATCGCCAGA
** * * * ** * * *
782614 GAACCAAACCGACGGCGTTGGGGTTTCGACAATCGGGAAGACCGGGGTGGGTGTGCGCACATGAT
66 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-AGG-GGGTGTGCACACATGAT
* * *
782679 GTG-CGATGGGTGCAGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
129 GTGTC-ATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
782743 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGGCATTAAAGTGTCTG
193 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
782808 AAATGGGGACACTTTTTTC-AATGGGTCACAAAATCTTGTACACTACGAGTATTTAGCTGAATTT
258 AAATGGGGACA-TTTTTTCAAAT-GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
782872 TTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
321 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCA
* ** ** *
782937 AAAAAATTTTAAAAAATCCCGAACCTCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGACTC
386 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
783002 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAA
451 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * *
783067 TGGCATTGGCACGTAGAAATATGAAGATGTACGTAAACCCACCTACCACCCTATCGATCCACGGC
516 TGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* ** * * * * * * *
783132 TTGCGCATCCCGTCACTCTTCCCGGCTTAGTGCCCGCCTGCCCGCCCGTCCGTTCATTTTGTCAG
581 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * * * * * *
783197 TTCGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGTA
646 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCA
* * *
783262 GGATCGACAGCACGTAGAGGGGGACCCGATCGATCCTCTGCTTGCGCATCCCACCCCTCTGGCCG
711 GGATCGGCAGCACGTAGAGGGGGACCCGATCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
783327 GCTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAG
775 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
* * *
783392 ATCGGACCGGACCGAAGGTTGCGGCAGCACATGCTG
840 ATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTG
* ** ** * **
783428 GGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCTGGA
1 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGCCACCATCGCCGGAGCATCGCCAGA
* * ** * *
783493 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGATGGGGCCGGGGGGGTGTGCGCACATGATG
66 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-AGGGGGTGTGCACACATGATG
* *
783558 TGTGATGGGTGCTGCTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
130 TGTCATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
783623 CCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
195 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
783688 ATGGGTACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTTGCGTTTTTAGCTGAATTTTTT
260 ATGGGGACA-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
783753 TGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
324 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAA
* * *
783818 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATC
389 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
783883 TTGCCATGAAACTTCACTTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGG
454 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * * *
783947 CATTGTCACGTAGAAATATGAAGACGTGCCTAAACCCACATACCACCCTATCGATCCATGGCTTG
519 AATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * *
784012 CGAATCACGTCTCTCTGGTCGGCGTAGTGCCTGCCAGCCTGCCTG-CCGCTCGTTTCGTCAGTTG
584 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* *
784076 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGA-CTGAGGGTTTGCGACAGCAG
649 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGG-TTGCGGCAGCAG
* * *
784140 GATCGGCAGCACGCAGAGGGGGATCCGA-CTGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCG
712 GATCGGCAGCACGTAGAGGGGGACCCGATC-GATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * * *
784204 GCTGACCACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAA
775 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
* *
784269 ATCGGACCAGACC-AAGGTT-CACGGCAGCACTTGCTG
840 ATCGGACCAGACCGAGGGTTGCA--GCAGCACATGCTG
* * *** * * * *
784305 GGCTCAGGCATGTGTTGGTGCCACATTTTTCTTCGTAGGGGCACCATCGCGGGAGCATCGTCGGA
1 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGCCACCATCGCCGGAGCATCGCCAGA
* * * * *
784370 GAACCTGACCGACGGCATTTGGGTTCTGACGATC-GGGGGGTC-GGGGGTGTACGCACATGATGT
66 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCACACATGATGT
* * *
784433 G-CGATCGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
131 GTC-ATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * *
784497 ATACCCCCTTAAAGAGCGTTTGAGATTTTACAAGTTTGCTACCAGAAGCCATTAAAGTGTCTGAA
195 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
784562 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTATTTTTTAGCTAAATTTTTT
260 ATGGGGACA-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * **
784627 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCGCAA
324 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAA
* * * * *
784692 AAATTTTAAAAAATCCTGAACCGCAGAAAGTTTCAAAAATCTTCAAAAATAGAAAACTAGTCGTC
389 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
784757 TTGCTATGAAGCTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATGG
454 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
784822 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTT
519 AATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
784887 CGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
584 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * ** * * *
784952 GCTTATGCATTCGGAGTTAATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGTGGCAGCAGGA
649 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGA
* * * * * * * *
785017 TCGGCAGCATGCAGAGGGGGGCCCGGTCGATCCCCGACTTGCGCAT-TCGACCCTCTGGCCAGCT
714 TCGGCAGCACGTAGAGGGGGACCCGATCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
785081 GAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAAGCAT
778 GAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-T-----TA--G-G--------C-A--T-A-C--
* * * **
785146 ACGGAGTTCTTTCCCAGTCTAAGATCGGACCGGACCGAGTGTTGTGGCAGCACATGCTG
819 A--GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTG
* * * *
785205 GGCTCGGGCATGTGTTGGTGCCGCATTTTTCTT---C--G------T---CGGAGCATCGTCGGA
1 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGCCACCATCGCCGGAGCATCGCCAG-
* * * * ** ** *
785256 AGAACCTGACCGGTC-GCATTGGGGTTCTGGCGATCGGGCGGGCTGGGGGGGTGTGTGCGCATGA
65 AGAACCTGACC-GACGGCATTGGGGTTCCGACGATCGGGGGGGC-CAGGGGGTGTGCACACATGA
* * *
785320 TGTG-CAATGGGTGCTGGTACTTGGCCCCTATATTGGCCGCCTATCCCTCATCAAACCTCGAGAA
128 TGTGTC-ATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
785384 CTCACTCCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
192 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
785449 GAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTA
257 GAAATGGGGACA-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
785514 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
321 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCA
* ** *
785579 AAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTC
386 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
785644 GTCTTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-GAAAA
451 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* ** * * * *
785708 TGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCATGAC
516 TGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
785773 TTGTGCATCCCTTCTTTCTGGCCGGCGTAGTGCCAGCCCGCCCGTCCGCCCGCTCGTTTCGTCGG
581 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
*
785838 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGA-CTGAGGGTTGCGGCAG
646 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCGGATC-GAGGGTTGCGGCAG
* * * * * * * * *
785901 GAAGATCGACAACACGCAGA-GGGGACCCGATCGATCCCCGGCTTACACATCCTGCCCCACTGGC
709 CAGGATCGGCAGCACGTAGAGGGGGACCCGATCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGC
* *
785965 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTA
773 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
* *
786030 AGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCACATGCTG
838 AG-AT-C-G-G----------A-C------C--A--G-ACCGAGGGTTGCAGCAGCACATGCTG
* * * * * * *
786094 GGCTCGAGCTTGTGCTGGTGCCGCA-TTTTCTTCGCCGAAGG--AACATCGTCGGGAGCATCGTC
1 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCG--GGCCACCATCG-CCGGAGCATCGCC
* * *
786156 GGAGAACCTGA-CGACGGCATTGGGGTTCCGATGATCGGGGCGGG---GGGTGTGTG--CACATG
63 AGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGGCCAGGGGGTGTGCACACATG
* * *
786215 ATGT-ACGA-GTGGTGCTGGTACTTGG-CCTTGTTATTGG-CCCCTATCCC-CATCAAACCTCGA
127 ATGTGTC-ATG-GGTGCTGCTACTTGGCCCTT-ATATTGGCCCCCTATCCCTCATCAAACCTCGA
786275 GAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTACAGGTTTGCTGCCCAGTAGCCATTAAAGT
189 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CCAGTAGCCATTAAAGT
*
786339 GTCTGAAATGGGGAC----TTTC---TGGTCAC-AAAT-TTTTAC-C-T-GAGTTTTTAG-TGAA
253 GTCTGAAATGGGGACATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
786391 TTTTTTT-TGCATGCCAA-AAAGAATACAA-GATCACGTCTA--AA-TTT--GGCCAAAA---C-
318 TTTTTTTGTGCATGCCAACAAA-AATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCT
* * * ** *
786444 TCC------A--TAAAAAAAT-CTG----GTAAAAAGTTTTGAAATTCATGAAAAATAGAAAACG
382 TCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
*
786496 AGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
447 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * * *
786561 AAAACGGCATTGGCATGTAGAAATATGAAGATATACCTAAACCCACCTACCACCCTATCGATCCA
512 AAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
*
786626 CGGCTTGCGCATCCCGTCTCTCTGGGCGGCGTAGT--------GCCCGCCCGCCCGCTCGTTTCG
577 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
* * * * * *
786683 TCTGTTGGCTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGAGGC
642 TCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGC
* * * *
786748 AGCAGGATCGGCAGCACGCAGAGAGGGG-CCCGGTCGATCCCCAGCTTGCTCATCCCGCCCCTCT
707 AGCAGGATCGGCAGCACGTAGAG-GGGGACCCGATCGAT-CCCGGCTTGCGCATCCCGCCCCTCT
* * * * **
786812 GGCTGACTGAGCGCCCGCAAGCTCGTTTCGTGAGTTGACTTAGGCATATGGAGTTCATTCCCAGT
770 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
* * * *
786877 CTAAGATCGGACCGGACTGAGGGGTGCGGCAGCACATGCTG
835 CTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTG
*
786918 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCAGA
1 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGCCACCATCGCCGGAGCATCGCCAGA
* * ** *
786983 GAACCTGACCGGCGGCATTCGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCACAAATGATGT
66 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCACACATGATGT
* * *
787048 GTGATGGGTGCTGCTACTTGGCCCATATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCA
131 GTCATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
787113 CACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACGGCCAGTAGCCATTAAAGTGTCTGAAA
196 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
787178 TGGGGACATTTTTTCAAATGGTCACAAAATCTTATGCACTTCGAGTTTTTAGCTGAATTTTTTTG
261 TGGGGACATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * * * **
787243 TGCATGCCAACAAAAATACAAGGATCACGTCTAATAATTTTATGGCCAAAACTCCGTCTGAAAAA
326 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAA
* ** *
787308 ATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCATGAAAAATATAAAACGAGTCGTCTT
391 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
787373 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCA
456 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAA
*** * * * * * *
787438 TTGGCACATAGAAATATGAAGATATACCTAAACCAACCTACGACCCTATCGATCGACAGCTTGCG
521 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
787503 CATCCCGTCTATCTGGCCGGCGTAGTGCCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
586 CATCCCGTCTCTCTGGCCGGCGTAGTG-CCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * *
787568 CTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGA-CTGAGGGTTACGACAGTAGGA
650 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGGCAGCAGGA
** * * * * *
787632 TCGATAGCACGTAGAGGGGGACTCGACCGATCCCCGACTTGCGCATCCCGCCCCACTGGCCGACT
714 TCGGCAGCACGTAGAGGGGGACCCGATCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
787697 AAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTACATGCCCAGTCTAAGCAT
778 GAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-T-----T----AG-----G--CA---T-A-C--
* * *
787762 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGAG-AGCACATGCTA
819 A--GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-AGCAGCACATGCTG
* * *
787821 GGCTCGGGCATGTGCTGGTGCCACATTTTCCTTCA-CTGGCGTACCATCGCCGGAGCATCGCCAG
1 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGC-CACCATCGCCGGAGCATCGCCAG
* ** * * *
787885 AGAACCTGACTGGTGGCATTAGGGTTCCGACGATC-GGGAGGCCAGGGGGTGTGCGCACATGATG
65 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCACACATGATG
787949 TG-CGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTCGAGAAC
130 TGTC-ATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAAC
* * * *
788013 TCACACCCCCTTAAAAAGCATTTGAGATTTTGCAGCTTTGCTACCAGTAGCCATTAAAGTGTCTG
193 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
788078 -AATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTT
258 AAATGGGGACA-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * *
788142 TTTGTGCATGCAAAAAAAAATACAAGGATCATGTCT-CCAAAGTTTATGGCCAAAACTTCTTTCA
322 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC-AAGTTTAGGGCCAAAACTCCTTCCA
* *
788206 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGATAAATAGAAAACGAGTC
386 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
** *
788271 ACCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAA
451 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * *
788336 TGGAATTGGCAAACAGAAATATGAAGATGTGCCTAAACCAACCTAACACCCTATCGATCCACGGC
516 TGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * *
788401 TTGCACATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGTTGGTTTTGTCAG
581 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* *
788466 TTGGCTTAGGCATACA-CGTTCATTCCCAGTCTAAGATCAGACCGGA-CTGAGGGTTGTGGCAGC
646 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGGCAGC
* * * * * *
788529 AGGATCGACAGCACGTAGAGGGAGACTCGATCGATCCCTGGCTTACGCATCCTGCCCCTCTGGTC
710 AGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCC
* *
788594 GGCTGAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCAAACAGAGTTCATTCCCAGTCTAA
774 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
788659 GCATACGGAGTTAATCTCCAGCCTAAGGTTGGACCTGATCGAGGGTTGCGGCAGCACATACAG
839 G-AT-C-G-G---------A-CC--A-----GA-C----CGAGGGTTGCAGCAGCACATGCTG
* * **
788722 GGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCTGGA
1 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGCCACCATCGCCGGAGCATCGCCAGA
* * *
788787 GAACTTGACC-AGCGGCATTGGGGTTTCGGCGATCGGGGGGGGCCAGGGGGTGTGCACACATGAT
66 GAACCTGACCGA-CGGCATTGGGGTTCCGACGATC-GGGGGGGCCAGGGGGTGTGCACACATGAT
* * *
788851 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACT
129 GTGTCATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
788916 CACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
194 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * **
788981 AATGGGGACAATTTTTTCAAATGGCCACAAAATCTTGTACACTTTGAGTTTTTAGCCAAATTTTT
259 AATGGGGAC-ATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * *
789046 TTATGCATACCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
323 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAA
* * *
789111 AAAATTTTAAAAAATCCAGAACTGCAGAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
388 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
789176 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATG
453 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
789241 GAATTGGCATGCAAAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
518 GAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
789306 GCGCATCCCGTCTCTCTGGCCGGTGTAGTGCACGCCCGCCCGCCTGCCCACTCGTTTCGTCGGTT
583 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * * *
789371 GCCTTAGGCATACAG-GTTCATTACCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGCGGCAAG
648 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGG
* ** * * * *
789435 ATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTACGCATCCCACTCTTCTGGCCGGC
713 ATCGGCAGCACGTAGAGGGGGACCCGATCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * ** * *
789500 TGAGGGCCCGCATGCTTATTTCGTGGGTTGACTTAGCCATACAGAGTTCCTTCCCAGTCTAAGAT
777 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
*
789565 CGGACCAGACCGAGGGTTGCAAGCAGCACGTGCTG
842 CGGACCAGACCGAGGGTTGC-AGCAGCACATGCTG
* * ** * * *
789600 GGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCCACCATCGCCGGAGCATTGTCGGA
1 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGCCACCATCGCCGGAGCATCGCCAGA
* * * * * *
789665 GAACCCGACCGACGGCATTGGGGTTTCAACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGT
66 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCACACATGATGT
* * * *
789730 G-CATTGAGTGCTGGTACTTGGCCCTTACATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTC
131 GTCA-TGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
** *
789794 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAACAGCCATTAAAGTGTCTGGA
195 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
789859 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
260 ATGGGGACA-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
789924 TGTGCATGCCAACAAAAATACAGGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
324 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAA
* * * ** *
789989 AAAGTTTAAAAAATCCTGAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
389 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
790054 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAATGG
454 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
790119 AATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
519 AATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * **
790184 CGCATCCCGTCTCTCTGGCCTGCGTGGTGCCCGCACGCTCGCCCGCCCATTCG-TTCGTCGGTTG
584 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * * * * *
790248 GCTTAGGCATACGGAGTTAATTCCCAGTCTAAGGTCAGATCAGATTGAGTGTTGCGGTAACAGGA
649 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGA
* * * *
790313 TCGGCAGCACGTAG-TGGGGTCCCGATCGATACCCGGCTTGTGCA-CCCACCCCTCTGGCCGGCT
714 TCGGCAGCACGTAGAGGGGGACCCGATCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * * *
790376 AAGTGCCCGTATGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
778 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
790438 CATATGGAGT
Statistics
Matches: 6082, Mismatches: 685, Indels: 490
0.84 0.09 0.07
Matches are distributed among these distances:
823 2 0.00
824 69 0.01
825 44 0.01
827 8 0.00
829 31 0.01
830 14 0.00
831 75 0.01
832 13 0.00
835 5 0.00
836 1 0.00
838 7 0.00
839 4 0.00
840 4 0.00
841 1 0.00
842 1 0.00
843 10 0.00
844 11 0.00
845 17 0.00
846 15 0.00
847 1 0.00
848 3 0.00
849 100 0.02
850 96 0.02
851 12 0.00
854 1 0.00
855 2 0.00
856 92 0.02
857 86 0.01
860 1 0.00
861 9 0.00
863 27 0.00
864 4 0.00
865 1 0.00
866 1 0.00
867 2 0.00
868 187 0.03
869 4 0.00
870 1 0.00
871 1 0.00
872 1 0.00
873 8 0.00
874 379 0.06
875 276 0.05
876 189 0.03
877 1079 0.18
878 454 0.07
879 114 0.02
880 14 0.00
881 12 0.00
882 4 0.00
883 5 0.00
884 8 0.00
885 4 0.00
886 21 0.00
887 32 0.01
888 44 0.01
889 286 0.05
890 367 0.06
891 4 0.00
892 2 0.00
893 15 0.00
894 76 0.01
895 17 0.00
896 35 0.01
897 2 0.00
898 9 0.00
899 2 0.00
900 81 0.01
901 248 0.04
902 215 0.04
903 1110 0.18
904 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (875 bp):
GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGCCACCATCGCCGGAGCATCGCCAGA
GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCACACATGATGT
GTCATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAA
ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATC
GGCAGCACGTAGAGGGGGACCCGATCGATCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGA
CCAGACCGAGGGTTGCAGCAGCACATGCTG
Found at i:790441 original size:26 final size:26
Alignment explanation
Indices: 790411--790463 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
790401 GTTGACTTAG
790411 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
** * *
790437 GCATATGGAGTTCTTTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
790463 G
1 G
790464 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:791019 original size:26 final size:26
Alignment explanation
Indices: 790990--791042 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
790980 GTTGACTTAG
790990 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
** * *
791016 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
791042 G
1 G
791043 ATCAGACCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:792799 original size:26 final size:26
Alignment explanation
Indices: 792763--792812 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
792753 GACTTAGGCA
792763 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
792789 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
792813 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:793699 original size:25 final size:26
Alignment explanation
Indices: 793664--793715 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
793654 GTTGACCTAG
793664 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
793690 GCATA-GGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
793715 G
1 G
793716 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 21 0.81
26 5 0.19
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:794284 original size:903 final size:900
Alignment explanation
Indices: 791083--794710 Score: 4865
Period size: 904 Copynumber: 4.0 Consensus size: 900
791073 TGCTAGGCTC
* * * *
791083 GGGCACCATCATCGGAGCATCGTCGGAGAACCTGACAGGCGGCATT-AGGGTTTCGACGATCGGG
1 GGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGA-GGTTCCGACGATCGGG
*
791147 GGAGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GCGC
65 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC-C
* *
791211 CCCTATCCCTCATCAAACCTCGAGAACTCACACCGCCTTAAAGAGCAATTGAGATTTTATAGGTT
129 CCCTATCCCTCATCAAACCTCGAGAACTCACACC-CCTTAAAGAGCATTTGAGATTTTACAGGTT
* * *
791276 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACACATTTTTCCAATGGTCACAAAATCTTG
193 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * *
791341 TACACTTCGATTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGAATCACGTCTAC
258 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * *
791406 CAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACTGCAAAAGGTTTCAA
323 CAAGTTTGGGGCCAAAACTCCTTC-CAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAA
* * *
791471 AAATCGTGAAAAATA-ATAAAGGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACC
387 AAATCATGAAAAATAGA-AAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *** * *
791535 ATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCACATAGAAATGTGAAGATGTGCGTAAAC
451 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * * *
791600 CCTCCTACCACCCTATCAATCCACGACTTGCGCAACCCGTCTCTCTGGCCGGCATAGTGCCCACC
516 CCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCC
* * * * * *
791665 CGCCTGCCCACCTGCTCGTTACGTCCATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
581 CGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGAT
* * * *** * *
791730 TGGACC-GAACTGAGGGTTGCGGTAGTAGGATCGACAGCACATGGAGGGGGACCCGGTCGATCCC
646 TAGACCAG-ACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAAGGGGACCC-GACGATCCC
* ** * * ** * * *
791794 CGGCCCGCGCATCTCGCCTATCTGGCTGGCTGAGCACCCACACACTCGTTTCGTGGGTTGACTTA
709 CGACTTGCGCATCCCACCCCTCTAGCCGACTGAGCACCCACACACTCGTTTCGTGGGTTGACTTA
* * * *
791859 GGCATGCAGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCCGA
774 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * * * ** * *
791924 CCGAGAGTTGCTG-CAGCACATGCTGGGCGCAGGCATGTTTTGGCTCTGCATTTTTCTTCGCTG
839 CCGAGGGTTGC-GACAGCACATGCTGGGCTCGGGCATGTGTTGG-TCCACATTTTTCTTCCCCG
* * * * * *
791987 GGGCACCATCGTCGGGGCATCGCCAGAGAACTTGACCGGCGGCATTGGGGTT-CTAGTGATC-GG
1 GGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGAGGTTCCGA-CGATCGGG
792050 GGGGCCGGGGGGGATGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
65 GGGGCCGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
792115 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAGGTT
129 CCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * *
792180 TGCTGCCAATAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCCAATGGTCACAAAATCTTG
193 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * *
792245 TACACATT-GAGTTTTTAGCTGAATTTTTTTTTTCATGCCAACAAAAATAAAAGGATCACGTCTA
258 TACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * *
792309 CCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTA
322 CCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
*
792374 AAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACC
386 AAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
792439 ATTATATGAATTTACAAGCCATAAGAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
451 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * * *
792504 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTTTCTCTGGCCGACGTAGT----GCC
516 CCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCC
* * ** * *
792565 CGACCGCCTGCATGCTCGTTTCATCGGTTGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGAT
581 CGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGAT
** * * *
792630 TAGACCAGACCGAGCATTGCGGTAGCAGGATCGGCAGCACGCAGAAGAGGACCCAAGCGATCCCC
646 TAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAAGGGGACCCGA-CGATCCCC
* * * * *
792695 GACTTGTGGATCCCACCCCTCTAGCCGGCTGAGCACCCGCACACTCCTTTCGTGGGTTGACTTAG
710 GACTTGCGCATCCCACCCCTCTAGCCGACTGAGCACCCACACACTCGTTTCGTGGGTTGACTTAG
* *
792760 GCATACGGAGTTCATTCCCAGTCTAAGCGTACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
775 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * *
792825 TGAGGGTTGCGACAGCACATGCTGGGGTCGGGCATGTGTTGGTTCAGCATTTTTCTTCCCCG
840 CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTCCA-CATTTTTCTTCCCCG
* * *
792887 GGGCACCATCG-CTGGAGCTTTGTCGGAGAACCTGACCGGCGGCATTG-GCGTTCCGACGATCGG
1 GGGCACCATCGTC-GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGAG-GTTCCGACGATCGG
* *
792950 AGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
64 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
793015 CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAAGTT
129 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-TTAAAGAGCATTTGAGATTTTACAGGTT
*
793080 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTA
193 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
*
793145 TACACTTCGAGTTTTTTAGCTGAATTTTTTTGTGCATGCCAACGAAAATACAAGGATCACGTCTA
258 TACACTTCGAG-TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * *
793210 CCAAGGTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCA
322 CCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
* * * * *
793275 AAAATCATGAAAAATACAAAACGAGCCGTCTCGCCCTGAAACTTCACGTGAAGGCTTAAGGGACC
386 AAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
793340 ATT-TATGAATTTACAAGCCAT-AAAATTGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
451 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * * *
793403 CCACCTACCACCCTATGGATCCATGGCTTGCGCATCCCGTCTCTCTGGCTGGCATAGTGCCCGCC
516 CCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCC
* * *
793468 CGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACTGAGTTGATTCCCAGTCTAAGAT
581 CGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGAT
* * * * * *
793533 TAGACCGGACCGAGGGTTGCGGCAGTAGGATCGATAGCATGCAGAAGGGGACCGTGACTGATCCC
646 TAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAAGGGGACC-CGAC-GATCCC
* * * *
793598 CGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGACCTA
709 CGACTTGCGCATCCCACCCCTCTAGCCGACTGAGCACCCACACACTCGTTTCGTGGGTTGACTTA
*
793663 GGCATACGGAGTTCATTCCCAGTCTAAGCATA-GGAGTTCATTCCCAGTCTAAGATCGGACCGGA
774 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * * * ***
793727 CCGAGGGTTACGATAGCACATGCTGGGTTCGGGCATGTGTCGGTGCCACATTTTTCTTTGTCG
839 CCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGT-CCACATTTTTCTTCCCCG
* * * * *
793790 AGGCACCATCGTCGGAGCATCACCGGAGAACCTAACCGGTGGCATTGAGGTTCCGATGATCGGGG
1 GGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATCGGGG
* * *
793855 GGGCC-GGGGGGTGTGCGCACATGGTGTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGTCCC
66 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
793919 CTATCCCTCATCAAACCTCGAGAACTCGCACCTCCTTAAAGAGCATTTGAGATTTTATAGGTTTG
131 CTATCCCTCATCAAACCTCGAGAACTCACACC-CCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
793984 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTA
195 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * * *
794049 CACTCCAAGTTTTTAGCTGAATTTTTTTGCGCATGCCAAGAAAAATACAAGGATCATGTCTACCA
260 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * **
794114 AGTTTGGGGCCAAAACGCCTTCCAAAATAATTTTAAAAAATCCCGAACCGTAAAAAGTTTGGAAA
325 AGTTTGGGGCCAAAACTCCTTCCAAAA-AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
* * * * *
794179 ATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAGGTGAAGCCTTAAGGGACCATT
389 ATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * *
794244 GTATGAATTTACAAGCCATAAAAATGGCATTGGTATGCAGAAATATGAAGGTGTACCTAAACCCA
454 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * *
794309 CCTACCACCTTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGC
519 CCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGC
* ** *
794374 CCG---G-CCGCTTGTTTCGTCGATTGGCTTAGGCATAAAGAGTTCATTCCCAGTCTAAGATCAG
584 CCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGATTAG
* * * * ** * * * *
794435 ACCAGACTGAGGGATGCGATAGCAGGATCGGCAGCACATAGAGGGGGACCCGACCAATCCTCAAC
649 ACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAAGGGGACCCGA-CGATCCCCGAC
* * * * * ** * *
794500 TTGAGCATCCCGCCCTTCTAGCTGACTGAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCA
713 TTGCGCATCCCACCCCTCTAGCCGACTGAGCACCCACACACTCGTTTCGTGGGTTGACTTAGGCA
* * *
794565 TACGGAGTTCATT-CCTGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAA
778 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA
* * * * **
794629 GTGTTGCGGTC-GCACATGCTAGGCTCGGGCATTTGTTGGTGCCGTATTTTTCTTCCCCG
843 GGGTTGC-GACAGCACATGCTGGGCTCGGGCATGTGTTGGT-CCACATTTTTCTTCCCCG
*
794688 GGGTACCATCGTCGGAGCATCGC
1 GGGCACCATCGTCGGAGCATCGC
794711 AAGAGAAACT
Statistics
Matches: 2406, Mismatches: 283, Indels: 76
0.87 0.10 0.03
Matches are distributed among these distances:
897 13 0.01
898 173 0.07
899 192 0.08
900 509 0.21
901 349 0.15
902 202 0.08
903 365 0.15
904 596 0.25
905 7 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGAGGTTCCGACGATCGGGG
GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
GTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
CATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
TACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCC
GCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGATTAGAC
CAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAAGGGGACCCGACGATCCCCGACTTG
CGCATCCCACCCCTCTAGCCGACTGAGCACCCACACACTCGTTTCGTGGGTTGACTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
TTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTCCACATTTTTCTTCCCCG
Found at i:794596 original size:25 final size:26
Alignment explanation
Indices: 794562--794613 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
794552 GTTGACTTAG
*
794562 GCATACGGAGTTCATT-CCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
794587 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
794613 G
1 G
794614 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:795969 original size:26 final size:26
Alignment explanation
Indices: 795933--795985 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
795923 GTTTACTTAG
*
795933 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
795959 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
795985 G
1 G
795986 ATCTGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:796836 original size:26 final size:26
Alignment explanation
Indices: 796800--796852 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
796790 CTTGACTTAG
*
796800 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
796826 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
796852 G
1 G
796853 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:797132 original size:878 final size:879
Alignment explanation
Indices: 794715--801082 Score: 7222
Period size: 897 Copynumber: 7.2 Consensus size: 879
794705 CATCGCAAGA
* *
794715 GAAACTTCACGTGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCAAAAAAATGGCATTGGC
1 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
794780 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCT
66 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
794845 TGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGTCCG--C-TT-GTTTCATCGGTTGGCTTAGG
131 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGG
* * * **
794906 CATACGGAGTTCATTCCCATTCTAAAGATCGGACC-GAAC-GAAGGGTTGCGGCAGCAGGATCTA
196 CATACGGAGTTCATTCCCAGTCT-AAGATCAGACCAG-ACTG-AGGGTTGCGGCAGTAGGATCGG
* * * * *
794969 CAGCACGTAAAGGGGGACCCGACCAATCCCTGGCTTGTGCATCTCGCCCCTCTGGCCGGCTGAGC
258 CAGCACGTAGAGGGGGACCCG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
795034 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCAG
322 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * ** * *
795099 AGTTCATTCCCAATCTAAGATTGGATCAGATAGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCG
387 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * *
795164 TGTGTTGGTGCCACATTTTTCTTCGCCAGGGCACCATCG-C----CA------GAGAACCTGACC
452 TGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACC
* * * *** *
795218 GGCGGCATTGGGGTTCCGGGGATC-AGGGGGCCAAAGGGGTGTGCGCAAATGATGTGCGATGGGT
517 GACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
795282 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
582 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
795347 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACAC
647 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
795412 TTTTTTCAAATGGTCACAAAATCTTGTATACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCC
712 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
795477 AACAAAAATACAAGGATCACATCTACAAAGTTTGGGGCCAGAAATCCTTTCGAAAAAATTTTAAA
777 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAA--C--TC----CAA---T---
* **
795542 AAATCCCGAACCGCAAAAAGTTTTGAAAAT-AGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
827 --A--CCG-A----AAAATGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
795604 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATGGCATTGGC
1 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** * *
795669 ACATAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCC
66 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* *
795734 CGTCTCTCTGGTCGGCGTAGT----GCCTGCCCGCCCG--C--TCGTTTCGTCGGTTGGCTTAGG
131 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGG
* * * * * **
795791 CATACGAAGTTCATTCCTAGTCTATGATCAGACCAGA-TGGAGGGTTGTGACA-TCAGGATCGAT
196 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAGT-AGGATCGGC
795854 AGCACGTAGAGGGGGA--C-CCGA-------C---CG-ATCCCGCCCCTC-GGCCGGCTGAGCAC
259 AGCACGTAGAGGGGGACCCGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
* * *
795904 CCGCACGCTCATTTCGTGGGTTTACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAG
324 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * *
795969 TTCATTCCCAGTCTAAGATCTGACCGGACCAAGGGTTGCGGCAGCACATGCTAGGCTCGAGCATG
389 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* *
796034 TGTTGGTGCCACATTTTTCTTCATC-GGG--CCA----C----CATCGCCGGAGAACCTGACCGA
454 TGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA
* ** * *
796088 CGGCATTGGGGTTCCGACGATCGACGGAGTCGGGGGAGGTGTGCGCACATGATGTGCGATGGGTG
519 CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGG-GGTGTGCGCACATGATGTGCGATGGGTG
*
796153 CTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTGT
583 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT-T
* * * *
796217 AAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATTTGAAATGGGCACAC
647 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
796282 TTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGCTTTTAGCTGAATTTTTTTGTGCATGCC
712 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
796347 AACAAAAATACAAGGATCACGTCAACCATGTTTGGGGCCAAAACTCC-AT-CC-AAAAATGTTTC
777 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCAATACCGAAAAATGTTTC
*
796409 AAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCAT
842 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
796447 GAAACTTCACGTGAAGGCTTAAGGGACCATGGTATGAATTTACAAGCCATAAAAATGGCATTGGC
1 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
796512 ACACAGAAATATGAAGATTTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
66 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
** * * *
796577 CGTCTCTCTGGCCAACGTAGTGCCCGCTCGCCTGCCCGCCCATTCGTTTCGTCGGTTGGCTTAGG
131 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGG
* ** * *
796642 CATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTATGGCAATAGGATCGGTAG
196 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGTAGGATCGGCAG
* * * * * * *
796707 CATGTAGAGGGGGACCCAGTCGATCCCCGGCTTCCTCATCCTGCCCCTCTGGCCAGTTGAGCACC
261 CACGTAGAGGGGGACCC-GCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACC
* * *
796772 CGCACGCTTGTTTCGTGGCTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGT
325 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * * *
796837 TCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGACGGCATATGCTGGGCTTGGGCATGT
390 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * *
796902 GTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCCCGGAGCATCGTCGGAGAACCTGACCGGC
455 GTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGAC
* * * ** * * *
796967 GACGTTGGGGTTTCCGGCGATCGGGGGGGCCGAGGTTGTGTACGCACATGATGAGTGATGGGTGC
520 GGCATTGGGG-TTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
797032 TGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
584 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
797097 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTT
649 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
797162 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCGTGCCAA
714 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
** * *
797227 CAAAAATATGAGGATAACGTCTACGAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTCAAAAA
779 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-C---C-----AA--T------
* * *
797292 ATCCCGAACTTCAAAAAGTTTCAAAAAACATGAAAAATAAAAAACGAGTCGTCTTGCCAT
827 A--CCG-A----AAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
797352 GAAACTTCACGTGAAGGCTTACGGGACCATTGTATGAATTTACAATCCATAAAAATGGCATTGGC
1 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
797417 ATGTAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCATGGCTTGCGCATCC
66 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * *
797482 CGTATCTTTGGCCAGCGTAGT----GCCCGCCCG-CC-CAC--TCGTTTTGTCGGTTGGCTTAGG
131 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGG
* * * * ** * *
797539 CATACGAAGTCCATTCCTAGTCTAATATTGGACCGGA-TGGAGGGTTGCGGCA-TCAGGATCAGC
196 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAGT-AGGATCGGC
* * * * * * * *
797602 AGTACGTAGAGTGGGACCCGATCGATCCCCAGCTTG-GACATTCGGCCCCTCTAGTCGGCTGAGC
259 AGCACGTAGAGGGGGACCCG-CCGATCCCCGGCTTGCG-CATCCCGCCCCTCTGGCCGGCTGAGC
* * *
797666 ACTCAG-ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGATTTCATTCCCAATCTAAGCATACG
322 AC-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * ** *** *
797730 GAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGCGATAGTGTATGCTGGGCTCGAGC
386 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * *
797795 ATGTGTTGGTGCCGTATTTTTCTTCATCGGGGCACCATCCCCAGAGCATCGTCGGAGAACCTGAC
451 ATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGAC
* ** * * ** *
797860 C-AGCGGCATTAGGGTTCCGAAGATC-GGGGGGTCGAGGGGGTGTATGCACATGATGAGCGATGG
516 CGA-CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
* * *
797923 GTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAAGTCACACCCTC
580 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
797987 TTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGAC
645 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
798052 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTATTTTGTGCATG
710 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
798117 CCAATAAAGATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTATCCAAAAAAATTTTA
775 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA--C--TCC-----AA---T-
* ** * * *
798182 AAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATATAAAACTAG-CTGTCTTGCCAT
827 ----A--CCG-A----AAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTC-GTCTTGCCAT
*
798246 GAAA-TCTCACGTGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATAAAAATGGCATTGG
1 GAAACT-TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * **
798310 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTGTCGATCCACGATTTGCGCATC
65 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
798375 CTGTCTCTTTGGCCGGCATAGTGCCCGCCCGCCCGCCCG--C--TCATTTCGTCGGTTGGCTTAG
130 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAG
* * * *
798436 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAAGACCGAGGGTTGCAGCAGTAGGATCGACA
195 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGTAGGATCGGCA
* * * * * *
798501 GCACGTAGAGGGGGACCTGACTGATCCCTGGCTTGCG-ATCCCACCCTTCTGGCCGGCTGAGCAT
260 GCACGTAGAGGGGGACCCG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
* * *
798565 CCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATACGGAG
324 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * *
798630 TTCATTCCCAGTCTAAGATTGGACCGGACCGATGGTTGTGGCAGCACATGCTGGGCTCGGGCGTG
389 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * * *
798695 TGTTGGTGCCGTATTTCTCTTCGCCAGGGCACCAT---C---G--T---CGGAGAACCTGACTGA
454 TGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA
* * * * *
798749 CGGCATTGGGGTTCCGACGATTGGGGGGGTC-GGGGGCTGAGCGCACATGATGTGCGATGGGTGC
519 CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
798813 TGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
584 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
798878 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAAACTT
649 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * *
798943 TTTTCAAATGGTCACAAAATCTTGTACAGTTCAATTTTTTTGCTGAATTTTTTTGTGCATGCC-A
714 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
*
799007 CAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCCAAAGTACCTTCCAAAAAAATTTTAAAAA
779 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA--A-C-TCC-----AA---T-----
* * *
799072 ATCTGGAACTGCAAAAA-GTTTCAGAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAT
827 A-C-----C-G-AAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
799132 GAAACTTCACGTGAAGGCTTAAGGGACTAATGTATGAATTTACAAGCCATAAAAATGGCATTGGC
1 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** * ** *
799197 GTGCA-AAATATTAAGATGTGGTTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCC
66 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * *
799261 CGTTTCTCTAGCCGGCGTAGTGTCCGCCCGCCTGCCCGCCCGTTCATTTCGTCGGTTAGCTTAGG
131 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGG
* * * * **
799326 CATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGATTGATGATTGCAGCAGTAGGATCGATAG
196 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGTAGGATCGGCAG
* * * * *
799390 CACGTAGAGGAGGACCCGACAGATCCCCAGCTTGCGCATCCCGCCCCTCTAGCCGACTGAGCACC
261 CACGTAGAGGGGGACCCG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACC
* *
799455 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGACTTCATTTCCAGTCTAAGCATACGGAGT
325 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
*
799520 TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
390 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * * *
799585 GTTGGTGCCACATTTTTTTTCATCGGGGCACCATCGCCGGAGCATCGCCGAAGAACCTGACCGAC
455 GTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGAC
** * * * *
799650 GGCATTGAAGTTCCAGTGATCGGGGGGGCCGGGGGGGGTGTGTGCACATGATGTGCAATGGGTGC
520 GGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
799715 TGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
584 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
799780 AAAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
649 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
799845 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAA
714 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
799910 CAAAAATACAAGGATCACGTCAACCATGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAT
779 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA---C-TCC----AA---T----A-
* * *
799975 CTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCGT
828 C-CG-A----AAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
800033 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTCTGAATTTACAAGCCGTAAAAATGGCATTGCC
1 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** *
800098 ATTCAGAAATATGAAGATGTGCCTAGACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
66 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
800163 CATCTCTCTGGCCGGCGCAGT----GCCTGCCCGCCCGTCCGTTCGTTTCGTCGGTTGGCTTAGG
131 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGG
* * * *
800224 CATACGGAGTTCATTCCCAGTCTAAGATC-GAACTAGACAGAGGGTGGCGGCAGCAGGATCGGCA
196 CATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCGGCAGTAGGATCGGCA
* * ** * * * *
800288 GGACGTAGAGGTGGACCCAATCGATCCCCGGCTTGCGCATCCCGCCCTTCTGGACGACTAAGCAC
260 GCACGTAGAGGGGGACCC-GCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
* * * *
800353 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTGCCAGTCTAACCATACAGAG
324 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * * ** * *
800418 TTCATTCCCAGTCTAAGATCAGATCAGACCGATGGTTGCGGTAGCACATGCTGACCTCGAGCTTG
389 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* ** * *
800483 TGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCATCGGAGCAGCGCTGGAGAACCTGACCGA
454 TGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA
* * *
800548 CGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGTTGTGCGCACATGATGTGTGATGGGTGC
519 CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*** * * * * *
800613 TGGCGTTTGGGCCTTATATTGGCCCCCTATCCCTGATCAAACCTCGAGAAGTCATACCGCCTTAA
584 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
800678 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG--TGAAATGGGGACACTT
649 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * *
800741 TTTTCAAATGGTCAGAAATTATTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
714 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *** * * **
800806 CAAAAATACAAGGGTCACGTCTACCAAGTTTGCCAACAAAAATTTTAAAAAATCCCGTACCGTAA
779 CAAAAATACAAGGATCACGTCTACCAAGTTTG-GGGC---------CAAAACTCCAATACCG-AA
800871 AAA-GTTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
833 AAATG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
800918 GAAACTTCACATGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
1 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * * * *
800983 ACGTAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTACCGATCAATGGCTTACACATCC
66 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* ** *
801048 CATCTCTCTGGCTAGCATAGTGCCCGCCCGCCCGC
131 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
801083 TCGTTTCATC
Statistics
Matches: 4755, Mismatches: 563, Indels: 322
0.84 0.10 0.06
Matches are distributed among these distances:
843 184 0.04
844 1 0.00
847 11 0.00
849 3 0.00
851 89 0.02
852 2 0.00
853 1 0.00
855 3 0.00
857 1 0.00
860 1 0.00
862 4 0.00
865 6 0.00
866 11 0.00
867 153 0.03
868 186 0.04
869 26 0.01
870 245 0.05
873 1 0.00
874 1 0.00
878 268 0.06
879 24 0.01
880 3 0.00
882 2 0.00
884 44 0.01
885 312 0.07
886 235 0.05
887 178 0.04
888 62 0.01
889 373 0.08
890 3 0.00
891 4 0.00
892 1 0.00
893 2 0.00
894 394 0.08
895 63 0.01
896 120 0.03
897 463 0.10
898 306 0.06
899 284 0.06
900 44 0.01
901 117 0.02
902 294 0.06
903 44 0.01
905 182 0.04
906 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (879 bp):
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGTAGGATCGGCAG
CACGTAGAGGGGGACCCGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
TTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACG
GCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCAATACCGAAAAATGTTTCAAAA
ATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
Found at i:797726 original size:26 final size:26
Alignment explanation
Indices: 797697--797756 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
797687 GTTGACTTAG
797697 GCATACGGATTTCATTCCCAATCTAA
1 GCATACGGATTTCATTCCCAATCTAA
* * *
797723 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGATTTCATTCCCAATCTAA
797749 G-AT-CGGAT
1 GCATACGGAT
797757 CGGACCGAGG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 4 0.13
25 2 0.07
26 24 0.80
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATACGGATTTCATTCCCAATCTAA
Found at i:798625 original size:26 final size:26
Alignment explanation
Indices: 798595--798645 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
798585 TTGACTTAGG
798595 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
798621 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
798646 GATTGGACCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:799522 original size:26 final size:26
Alignment explanation
Indices: 799483--799542 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
799473 GTTGACTTAG
*
799483 GCATACGGACTTCATTTCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
*
799509 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
799535 G-AT-CGGAC
1 GCATACGGAC
799543 CAGACCGAGG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 4 0.13
25 2 0.06
26 25 0.81
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:799967 original size:902 final size:900
Alignment explanation
Indices: 796397--807596 Score: 9083
Period size: 894 Copynumber: 12.3 Consensus size: 900
796387 AAACTCCATC
*
796397 CAAAAATGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAA
1 CAAAAA-GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* *
796462 GGCTTAAGGGACCATGGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
65 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
* * **
796527 GATTTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAA
130 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * * *
796592 CGTAGTGCCCGCTCGCCTGCCCGCCCATTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
195 CGTAGTGTCCGCCCGCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* ** * ** *
796657 CCCAATCTAAGATCAGACCAGACTGAGGGTTATGGCAATAGGATCGGTAGCATGTAGAGGGGGAC
260 CCCAGTCTAAGATC-GACCAGACTGAGGGTTGCGGCAGTAGGATCGACAGCACGTAGAGGGGGAC
* * * * * *
796722 CCAGTCGATCCCCGGCTTCCTCATCCTGCCCCTCTGGCC-AGTTGAGCACCCGCACGCTTGTTTC
324 CC-GACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA-CTGAGCACCCGCACGCTCGTTTC
* *
796786 GTGGCTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
387 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * * * *
796851 AGATCGGACCGGACTGAGGGTTACGACGGCATATGCTGGGCTTGGGCATGTGTTGGTGCCGCATT
452 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATT
* * * *
796916 TTTCTTCGTCGGGGCACCATCCCCGGAGCATCGTCGGAGAACCTGACCGGCGACGTTGGGGTTTC
517 TTTCTTCGTCGGGGCACCATCCCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG-TTC
* ** * * * *
796981 CGGCGATCGGGGGGGCCGAGGTTGTGTACGCACATGATGAGTGATGGGTGCTGGAACTTGGCCCT
581 C-GCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
797046 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
645 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
797111 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCA
710 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * **
797176 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCGTGCCAACAAAAATATGAGGA
775 CAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * * **
797241 TAACGTCTACGAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTCAAAAAATCCCGAACTT
840 TCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAATTTTAAAAAATCCCGAACCG
* *
797303 CAAAAAGTTTCAAAAAACATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
1 CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * * *
797368 GCTTACGGGACCATTGTATGAATTTACAATCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
66 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* * * * *
797433 ATGTGCCTAAACCCACCTGCCACCCTATCGATCCATGGCTTGCGCATCCCGTATCTTTGGCCAGC
131 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * *
797498 GTA--GT--GCCCGCCCGCCCACTCG-T--TTT-GTCGGTTGGCTTAGGCATACGAAGTCCATTC
196 GTAGTGTCCGCCCGCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * *
797555 CTAGTCTAATATTGGACCGGA-TGGAGGGTTGCGGCA-TCAGGATC-AGCAGTACGTAGAGTGGG
261 CCAGTCTAAGA-TCGACCAGACT-GAGGGTTGCGGCAGT-AGGATCGA-CAGCACGTAGAGGGGG
* * * * * * *
797617 ACCCGATCGATCCCCAGCTTG-GACATTCGGCCCCTCTAGTCGGCTGAGCACTCAG-ACGCTCGT
322 ACCCGA-CGATCCCCGGCTTGCG-CATCCCGCCCCTCTGGCCGACTGAGCAC-CCGCACGCTCGT
* * *
797680 TTCGTGGGTTGACTTAGGCATACGGATTTCATTCCCAATCTAAGCATACGGAGTTCATTCCTAGT
384 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* ** *** *
797745 CTAAGATCGGATCGGACCGAGGGTTGCGATAGTGTATGCTGGGCTCGAGCATGTGTTGGTGCCGT
449 CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGT
* * * *
797810 ATTTTTCTTCATCGGGGCACCATCCCCAGAGCATCGTCGGAGAACCTGACC-AGCGGCATTAGGG
514 ATTTTTCTTCGTCGGGGCACCATCCCCGGAGCATCGCCGGAGAACCTGACCGA-CGGCATTGGGG
* * * ** *
797874 TTCCGAAGATC-GGGGGGTCGAGGGGGTGTATGCACATGATGAGCGATGGGTGCTGGTACTTGGC
578 TTCCG-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * *
797938 CCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAAGTCACACCCTCTTAAAGAGCATTTGA
642 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
798002 AATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGG
707 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
798067 TCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTATTTTGTGCATGCCAATAAAGATACAA
772 TCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
798132 GGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTATCCAAAAAAATTTTAAAAAATCCCGAACC
837 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCC-AAAAAATTTTAAAAAATCCCGAACC
798196 G
900 G
* ** * * *
798197 TAAAAAGTTTTGAAAATCGTGAAAAATATAAAACTAG-CTGTCTTGCCATGAAA-TCTCACGTGA
1 CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC-GTCTTGCCATGAAACT-TCACGTGA
* *
798260 AGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGA
64 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
* ** * *
798325 AGATGTGCCTAAACCCACCTACCACCCTGTCGATCCACGATTTGCGCATCCTGTCTCTTTGGCCG
129 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* *
798390 GCATA--GT--GCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
194 GCGTAGTGTCCGCCCGCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * *
798451 TCCCAGTCTAAGATCAGACAAGACCGAGGGTTGCAGCAGTAGGATCGACAGCACGTAGAGGGGGA
259 TCCCAGTCTAAGATC-GACCAGACTGAGGGTTGCGGCAGTAGGATCGACAGCACGTAGAGGGGGA
* * * * * * *
798516 CCTGACTGATCCCTGGCTTGCG-ATCCCACCCTTCTGGCCGGCTGAGCATCCACACGCTCGTTTC
323 CCCGAC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTC
* *
798580 ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATACGGAGTTCATTCCCAGTCTA
387 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * *
798645 AGATTGGACCGGACCGATGGTTGTGGCAGCACATGCTGGGCTCGGGCGTGTGTTGGTGCCGTATT
452 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATT
* * * *
798710 TCTCTTCGCCAGGGCACCAT---C---G--T---CGGAGAACCTGACTGACGGCATTGGGGTTCC
517 TTTCTTCGTCGGGGCACCATCCCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCC
* * * * *
798764 GACGATTGGGGGGGTC-GGGGGCTGAGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCACTT
582 G-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
798828 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
646 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
*
798893 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAAACTTTTTTCAAATGGTCAC
711 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * * *
798958 AAAATCTTGTACAGTTCAATTTTTTTGCTGAATTTTTTTGTGCATGCC-ACAAAAATACAAAGAT
776 AAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* ** *
799022 CACGTCTACCAAGTTTGGGGCC-AAAGTACCTTCCAAAAAAATTTTAAAAAATCTGGAACTG
841 CACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCC-AAAAAATTTTAAAAAATCCCGAACCG
* * *
799083 CAAAAAGTTTCAGAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAG
1 CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * ** *
799148 GCTTAAGGGACTAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCGTGCA-AAATATTAAG
66 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
** * * *
799212 ATGTGGTTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGTTTCTCTAGCCGGC
131 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* *
799277 GTAGTGTCCGCCCGCCTGCCCGCCCGTTCATTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTC
196 GTAGTGTCCGCCCGCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * *
799342 CCAGTCTAAGATCGACCAGATTGATGATTGCAGCAGTAGGATCGATAGCACGTAGAGGAGGACCC
261 CCAGTCTAAGATCGACCAGACTGAGGGTTGCGGCAGTAGGATCGACAGCACGTAGAGGGGGACCC
* *
799407 GACAGATCCCCAGCTTGCGCATCCCGCCCCTCTAGCCGACTGAGCACCCGCACGCTCGTTTCGTG
326 GAC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTG
* *
799472 GGTTGACTTAGGCATACGGACTTCATTTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
390 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* **
799537 TCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTT
455 TCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTT
* * * * ** *
799602 TTTCATCGGGGCACCATCGCCGGAGCATCGCCGAAGAACCTGACCGACGGCATTGAAGTTCCAGT
520 CTTCGTCGGGGCACCATCCCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCC-GC
* *
799667 GATCGGGGGGGCCGGGGGGGGTGTGTGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTAT
584 GATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * *
799732 GTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCGTTTGAGATTTT
648 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
799797 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
713 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
** *
799862 AATCTTGTACACTTTGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCA
778 AATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * *
799927 CGTCAACCATGTTTGGGGCCAAAACTCCTTCCAAAAAATTTT-AAAAATCTCGAACCG
843 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCGAACCG
* * *
799984 TAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCGTGAAACTTCACGTGAAG
1 CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * * **
800049 GCTTAAGGGACCATTGTCTGAATTTACAAGCCGTAAAAATGGCATTGCCATTCAGAAATATGAAG
66 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* *
800114 ATGTGCCTAGACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGC
131 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * *
800179 GCA--GT--GCCTGCCCGCCCGTCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
196 GTAGTGTCCGCCCGCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * *
800240 CCAGTCTAAGATCGAACTAGACAGAGGGTGGCGGCAGCAGGATCGGCAGGACGTAGAGGTGGACC
261 CCAGTCTAAGATCG-ACCAGACTGAGGGTTGCGGCAGTAGGATCGACAGCACGTAGAGGGGGACC
* * * *
800305 CAATCGATCCCCGGCTTGCGCATCCCGCCCTTCTGGACGACTAAGCACCCGCACGCTCGTTTCGT
325 CGA-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGT
* * * *
800370 GGGTTGACTTAGGCATACGAAGTTCATTGCCAGTCTAACCATACAGAGTTCATTCCCAGTCTAAG
389 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * ** * *
800435 ATCAGATCAGACCGATGGTTGCGGTAGCACATGCTGACCTCGAGCTTGTGTTGGTGCCGTATTTT
454 ATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTT
** * * *
800500 TCTTCGTCGGGGCACCATCATCGGAGCAGCGCTGGAGAACCTGACCGACGGCATTGGGGTTCTGG
519 TCTTCGTCGGGGCACCATCCCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTC-CG
* * *** *
800565 CGATCGGGGGGGCCGGGGGGTTGTGCGCACATGATGTGTGATGGGTGCTGGCGTTTGGGCCTTAT
583 CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * * *
800630 ATTGGCCCCCTATCCCTGATCAAACCTCGAGAAGTCATACCGCCTTAAAGAGCATTTGAGATTTT
648 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
*
800695 ACAGGTTTGCTGCCAGTAGCCATTAAAGTG--TGAAATGGGGACACTTTTTTCAAATGGTCAGAA
713 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * *
800758 ATTATTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGGTCA
778 AATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
*
800823 CGTCTACCAAGTTT---GCC--AA-------C-AAAAATTTTAAAAAATCCCGTACCG
843 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCGAACCG
* *
800868 TAAAAAGTTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAA
1 CAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* *
800933 GGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAA
65 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
* * * * * * * **
800998 CATGTGCCTAAACCCACCTACCACCCTACCGATCAATGGCTTACACATCCCATCTCTCTGGCTAG
130 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * ** * *** * *
801063 CATAGTGCCCGCCCGCCCGCTCGTTTC-ATCAGTTTCAGAAATC-G-TGAAAAATA-GAAAAC-G
195 CGTAGTGTCCGCCCGCCCGCCCG-CCCGTTCA-TTTC-G---TCGGTTG--GCTTAGGCATACGG
* ** ** ** * **
801123 AGTCGTC-TTGCCA-TGAAACTTC-A-C-G--TGAAGCCTTAAG-GGACCATTGTATGAATTTAC
252 AGT--TCATTCCCAGTCTAAGATCGACCAGACTG-AGGGTT--GCGG--CA--GTA-GGATCGAC
* ** * * * * *** * *
801180 AAGC-CATAAAAATGCATTGGCATGCAGA-AAT-ATGGAGATGTGC-CTAAACCCACGTACCACC
307 -AGCACGT----A-G-AGGGGGA-CCCGACGATCCCCG-GCT-TGCGC---ATCC-CG--CC-CC
*** * ** * * * *
801241 -CTGTCGATCC-AC-G-GCTTGCGCA-TCTCGTCTCTC-T-GGCCGGCATAGTGCCCGTCCGCCC
355 TCTG--G--CCGACTGAGCACCCGCACGCTCGT-T-TCGTGGGTTGACTTAG-G--CAT----AC
* * * * * * * * * *
801299 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAACATTGAAT
407 G---G--AGTTC-ATTC-CCAG-T--C-TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* ** * * * * * ** * * *** *
801364 CAGATTGAGGGTTGCAGCAGTAGGAT-C--GAC-AGCACATAGAG--GGGGACACG-ATCAATCC
461 CGGACCGAGGGTTGCGGCAGCA-CATGCTGGGCTCGGGCAT-GTGTTGGTG-C-CGTATTTTTCT
* * *** ** * * * * * * **
801422 ACGGCTTCCGCATCCCGCCCCTCTG-GC--CGGCTGAGCACCCG--C-AC-GC-TT--GTTTCAT
522 TCGTC-GGGGCA--CCATCCC-CGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* * * **** ***** * *** ** * * ** * * *
801477 TGGTTGACTTAGGCATACAGAGT-T-CATTC-CCA-GT-CTAAGCATACGGAGTTCATT--CCCA
583 CGATCG-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG-GTAC-TTGGCCC-
* * * * * ** * ** * ** ** * **
801535 GTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCT-G-G-GCTTGGGCA-TGCGTTGG
644 -T-T-ATATTGG-CC--CCCTA----TCCCTCATCA-AACCTCGAGAAC-T-CACACCCCCTTAA
* * **** * *
801596 TGCCGCATTT----TTCTTCACCAGGGCACCATCGCCCGAGAACCTGACCGGCCGCATT--GGGG
696 AG-AGCATTTGAGATT-TT-A-CAGGTTTGC-T-G-CC-AG----T-A---G-C-CATTAAAGTG
** * ** ** ***** * * * ** ** **
801655 TCCTGGCGATCGGGAGGC--CGTGGGGGTTGTGCGC-ACATGATGTACGA-TGGGTGCTGGTACT
743 T-CT-GAAATGGGGACACTTTTTTCAAATGGT-CACAAAATCTTGTAC-ACT---T-CAAGTTTT
* ** * * * * ** * * ** *
801716 TGGC--CCTTATATTG-GCCCCCTATCCCTCATCAAACCT-CGAGAACTCACACCCCCTTA-AAG
800 TAGCTGAATTTTTTTGTG----C-AT-GC-CAACAAAAATACAAGGA-T--CA-CGTC-TACCA-
*** **** * * ** **** ** * **
801776 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTAT-CTGAAATGG
852 AG--TTTG-G---GGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCG-AACCG
* **** ** * * * ** * ** *
801831 TGACACTTTTTTCAAATGGTCA-CAAAATCTTGTACACTTCGAGT--TTTTAG-C-TGAATTTTT
1 -CA-AAAAGTTTCAAA-AATCATGAAAA-ATAG-A-A-AACGAGTCGTCTT-GCCATGAAACTTC
** * * * * * * * ** * * *
801891 TTGTGCATGCCAAAAAAAATACAAGAATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
58 ACGTG-AAGGC-------TTA-AGGGACCAT-TGTATGAA-TTT------ACAA-GCC-AT--AA
*** * * * * * * ** *
801956 AAGATTTTAAAAAATCTCGAACCGCAAAAAGGTTTGAAAAT-TG--TGAAA---A-ATAGAAAAC
102 AA-A---T--GGCAT-TGGCA-CGCAGAAA--TATGAAGATGTGCCT-AAACCCACCTA-CCACC
* *** * ** * * * *** **
802014 C-A---AT---CGTCTTGC-CATGAAAGT-TC-ATGTGAAGGCTTAAGGGACCATTGTATGAATT
155 CTATCGATCCACGGCTTGCGCAT-CCCGTCTCTCTG-GCCGGCGT-AGTGTCC---GCCCG--CC
** ** * ** ** * * * ** * * * * * * ** * ** *
802069 TACAAG-CCATAAAAAT-GGC-ATTGGCATGCAGAAATATGAAGAT-GTGCCTAAACTCACCTAG
212 CGCCCGCCCGTTCATTTCGTCGGTTGGC-T-TAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* ** * * * ** ** * * *
802130 CACCATATCGATCTGCGACTTGC-GCA-T-GCCATC-TC-TCTGGTAGGCATAGTG-CCCGGC-C
275 -ACC--A--GA-CTGAGGGTTGCGGCAGTAG-GATCGACAGCACGTA-G-AGGGGGACCCGACGA
* * ** * * * *** ** *
802188 CCCTGCCCGCCCGCTCATTTTATCGGTTGGCT-TAGGCATACAGAGTTCATTCCCAGTCTAAGAT
331 TCC--CCGGCTTGCGCA---T-CCCG-CCCCTCT-GGCCGACTGAG--CA--CCC-G-C----A-
* * * * * *
802252 CAGAC-CAGATT-GAGGGTTGCGGCATCACGATCAACAGCACGCAGAGAGGGACCCGATCGA-TC
377 C-G-CTC-GTTTCGTGGGTT---G----AC--T---TAG---GC--ATACGGA---GTTC-ATTC
* * ** * * *** ** * * * ** *** *
802314 CCCGACTTGTGCATCCCGCCCTC-TGGCC-GGCTGAGCACCCCCACGCTCGTTTCGTGGGTTGAC
418 CCAGTC-TAAGCATACGGAGTTCATTCCCAGTCTAAG-A-TCGGA--C-CGGACCGAGGGTTG-C
* * * * * * ** ****
802377 TTAGGCATACGGAGTTCATTCCCAGTCTAGGATCGGAC-CGCATG-TGTTGGTGCCGCATTT-TT
476 ---GGC--A-GCA---CA-T----G-CTGGGCTCGGGCATG--TGTTGGTGCCG-TATTTTTCTT
* *** ** * * * * * * *
802439 CGTCGCCAGGGTACATCATCGGTGCATCACAGGAAAACCTGACTGGCGGCA-TGGGGTTCCGGCA
523 CGTCG--GGGCACCATCCCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCC-GCG
* *
802503 ATCAGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATAT
585 ATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
802567 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCGTTTGAGATTTTAC
650 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * * *
802632 AGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAAAGGGGATACTTTTTTCAAATGGTCACAAAA
715 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
802697 TCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGTGCATGCCCAA-AAAAATACAAGGATCAT
780 TCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATG-CCAACAAAAATACAAGGATCAC
* * *
802761 GTCTACAAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGCACCG
844 GTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCG
* * *
802819 CAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGTAACTTCACGTGAAG
1 CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
802884 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCCTTGGCACGTAGAAATATGAAG
66 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* * *
802949 ATGTGCCTAAACCCA-CTAACCACCCTATCGATCCATGGCTTGCGCATGCCGTCTCTCTGGCCAG
131 ATGTGCCTAAACCCACCT-ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * * *
803013 CGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATT
195 CGTAGTGTCCGCCCGCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * *
803078 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATTGACAGCACGCAGAGGGGGAC
260 CCCAGTCTAAGATC-GACCAGACTGAGGGTTGCGGCAGTAGGATCGACAGCACGTAGAGGGGGAC
* * * * * *
803143 CCGACCGATCCCCAGCTTGCGCATCCCGCCCCTC-GACCGGCTGAGCACCTGCACGCTCATTTCA
324 CCGA-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCG
* * * *
803207 TGGATTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCATACGAAGTTCATTCCCAATCTAA
388 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * *
803272 GATCAGATCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTT
453 GATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTT
* * ** * * * * *
803337 TTCTTCGTCAGGGCAGCATCGTCAGAGCATCACCGAAAAACCTGACCGACGGCATTAGGGTTCCG
518 TTCTTCGTCGGGGCACCATCCCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCC-
* * *
803402 GTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTT
582 GCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
803467 TATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTT
647 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
803532 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
712 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
** * * ** *
803597 AAATCTTGTACACTTTGATTTTTTAGCTGAATGTTTTTGTGCATGCTGAGAAAAATACAAGGATC
777 AAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
*
803662 ATC-TCTACCAAGTTTGGGGCCAAAACTCCTTCGGAAAAAATTTTAAAAAATCCCGAACCG
842 A-CGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAAATTTTAAAAAATCCCGAACCG
* ** * *
803722 CATAAAGTTTCAAAAATTGTGAAAGATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAA
1 CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* **
803787 GCTTAAGGGACCATTTTATGAATTT-CAAAGCCATAAAAATGGCATTGGCTTGCAGAAATATGAA
66 GCTTAAGGGACCATTGTATGAATTTAC-AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
* *
803851 GATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGT
130 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * ** *
803916 TGTAGTGCCTGCCCGCCCGCCCGCCCGCCCGCTT-GTTTCGTCATTTGGCTTAGGCATACGGAAT
195 CGTAGTG--T--CCGCCCGCCCGCCCGCCCG-TTCATTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * ***
803980 TCATTCCCAGTCTAAGATCAAACCAGATTGAGGGTTGCAGTAGCAGGATCGGTGGCACGTAGAGG
255 TCATTCCCAGTCTAAGATC-GACCAGACTGAGGGTTGCGGCAGTAGGATCGACAGCACGTAGAGG
* * * * * * *
804045 GGGATCCGGCCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCACACCCTCA
319 GGGA-CCCGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCG
* *
804110 TTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATACAGAGTTCATTCCCAG
383 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* *** * ** * * * * *
804175 TCTAAGATCAGATTAGACCAAGGGTTATGACCGCATATACTGGGCTCGGGCATGTGTTGGTGCCA
448 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCG
* * * ** * * * ** *
804240 CATTTTTTTTCATCGGGAAACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCAACATTGAGG
513 TATTTTTCTTCGTCGGGGCACCATCCCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* * * *
804305 TTCTGAGGATCGGGGTGGCCGGGGGGGTCTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
578 TTCCG-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * * * *
804370 CCTTATATTGGCCCCCTATCCGTCATCAAACCTTGAGAACTGACGCCCCCTAAAAGAGCATTTGA
642 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
804435 GATTTTATAGGTTTGCTGCGAGTAGCCATTAAAGTGTCTGAAAATGGGGACACTTTTTTCAAATG
707 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAATG
* * *
804500 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTTTGTGCATGCCAAAAAAAATACA
771 GTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * * * * *
804565 AGGATCATGTCTACCATGTTTGGGGCAAAAACTCATTCTAAAAAAATTTTAAAAAATCCCGAACT
836 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAAATTTTAAAAAATCCCGAACC
804630 G
900 G
* *
804631 CAAAAAGTTTCGAAAATCATTAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
1 CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
804696 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCCTTGGCACGTAGAAATATGAAG
66 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* * *
804761 ATGTGCCTAAACCCA-CTAACCACCCTATCGATCCATGGCTTGCGCATGCCGTCTCTCTGGCCAG
131 ATGTGCCTAAACCCACCT-ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * * * * *
804825 CGTAGTGCCCGCCCGCCCGCTCGCTCGCTCGTTTTGTCGGTTGGCTTAGGCATATGGAGTTCATT
195 CGTAGTGTCCGCCCGCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * *
804890 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATTGACAGCACGCAGAGGGGGAC
260 CCCAGTCTAAGATC-GACCAGACTGAGGGTTGCGGCAGTAGGATCGACAGCACGTAGAGGGGGAC
* * * * * * *
804955 CCGACCGATCCCCAGCTTGCGTATCCCGCCCCTC-GACCGGCTGAGCACCTGCACGCTCATTTCA
324 CCGA-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCG
* * * *
805019 TGGATTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCATACGAAGTTCATTCCCAATCTAA
388 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
805084 GATCAGATCGAACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTT
453 GATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTT
* ** * * * * *
805149 TTCTTCGT-GAGGGCAGCATCGTCAGAGCATCACCGAAAAACCTGACCGACGGCATTAGGGTTCC
518 TTCTTCGTCG-GGGCACCATCCCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCC
* *
805213 GGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTT
582 -GCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * *
805278 TTATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATT
646 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
805343 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
711 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
** * * ** *
805408 AAAATCTTGTACACTTTGATTTTTTAGCTGAATGTTTTTGTGCATGCTGAGAAAAATACAAGGAT
776 AAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* *
805473 CATC-TCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAATTTTAAAAAATCTCGAACCG
841 CA-CGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAAATTTTAAAAAATCCCGAACCG
* ** * * *
805534 CATAAAGTTTCAAAAATTGTGAAAGATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAA
1 CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* **
805599 GCTTAAGGGACCATTTTATGAATTT-CAAAGCCATAAAAATGGCATTGGCTTGCAGAAATATGAA
66 GCTTAAGGGACCATTGTATGAATTTAC-AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
* * *
805663 GATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCAGGCCGA
130 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * *
805728 CATA--GT--GCCCGCCCGCCCG--C--TCGTTTGGTCGGTTGGCTTAGGCATACGGAGTTCATT
195 CGTAGTGTCCGCCCGCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * *
805785 CCTAGTGTAAGATCGGATCGGA-TCGAGGGTTGCGGCAGTAGGATCG-CAGCACGTAGA-AGGGA
260 CCCAGTCTAAGATC-GACCAGACT-GAGGGTTGCGGCAGTAGGATCGACAGCACGTAGAGGGGGA
* * ** * * * *
805847 CCCGACCGATCCTCGACTTATGCATCCCGCCCTTCTGGCCGGCTGAGCACCTGCACGCTTGTTTC
323 CCCGA-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTC
* * *
805912 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATATGGAGTTCATACCCAGTCTA
387 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * * * *
805977 GGATCGGACTGGACCGAGGGTTACAGAAGCACATGCTGGGCTTGGGCATGTGTTGGTGCCGCATT
452 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATT
* * ** * * * *
806042 TTTCTTCATCGGGGCACCATCGCCGGAGCCCCGCCAGAAAACCTGACAGTCGGCATTGGGGTTCC
517 TTTCTTCGTCGGGGCACCATCCCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCC
* * *
806107 GACGATCGGGGGGGCCGGGGGGGTGTGCACAGATGATGTACGATGGGTGCTGGTACTTGGCCCTT
582 G-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * * * ***
806172 ATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTCACACCTCCTTAAGGAGTGCTTGAGATT
646 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * *
806237 TTATAGGTTTGCTGCCAGTAGCCATTAAACTGTCTGAAATGGGGATACTTTTTTCAAATGGTCAC
711 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * * * *
806302 AAAATCTTGTACACTTCGAGTTGTTAGCTGAATTTTTTTGTGCCTGCCAAAAAAAATACAAGTAT
776 AAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * * **
806367 CACCTCTACTAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTAAAAAAATCATGAACCG
841 CACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAATTTTAAAAAATCCCGAACCG
*
806428 TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
1 CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
806493 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCCTTGGCACGCATAAATATGAAG
66 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* *
806558 ATGTGCCTAAACCCACCTACCACGCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGC
131 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * * * *
806623 GTAGTGCCCGCCAGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
196 GTAGTGTCCGCCCGCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * ** * * * **
806688 TCAGTCTAAGATAGGACTGGACCGAGGGTTGCGGCAGCAGTATCG-CAGCACACAGAGGGGGACT
261 CCAGTCTAAGAT-CGACCAGACTGAGGGTTGCGGCAGTAGGATCGACAGCACGTAGAGGGGGAC-
* * * * * * *
806752 CAGCCGATCCCCGGCTTGCGCATACCGCCCCTCTGACCGGCTGAGGACCCGCA-GACTCGTTTTG
324 CCGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACG-CTCGTTTCG
*
806816 TGGGTTGACTTAGGCATACTGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C---C--A
388 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * *
806865 GA-CTGA----A--GA---TTGCAGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATTT
453 GATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTT
* *** * * **
806920 TTCTTCATCGGGGCACCATGATCGGAGCATCACCGGAGAACCTGATCGACGGCATTAAGGTTCCG
518 TTCTTCGTCGGGGCACCATCCCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* * * * *
806985 ACGATTGGGGGGGCCGGGGAGGGTGGGCACACATGATGTGTGATGGGTGCTGGTATTTGGCCCTT
583 -CGATCGGGGGGGCCGGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
807050 ATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
646 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
807115 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
711 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
** *
807180 AAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTTGTGTATGCCAACAAAAATACAAGGAT
776 AAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* *
807245 CATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCA
841 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCG
* ** *
807306 TAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
1 CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * * * * * *
807371 GCTTAAGCGACAATTGGATGAAGTTAAAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAG
66 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* * *
807436 ATGTGCCTAAACCCACCTACCACCCTATCGATCAACAGCTTGCGCATCCCGTTTCTCTGGCCGGC
131 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * * ** * *
807501 GTAGTGCCCGCCTGCCTGCCCGTCCGCACATTTCATCGGTTGGCATAGGCATACGGAGTTCATTC
196 GTAGTGTCCGCCCGCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* *
807566 CCAGTCTAAGATCAGACCGGACCGAGGGTTG
261 CCAGTCTAAGATC-GACCAGACTGAGGGTTG
807597 GGGTAGCACA
Statistics
Matches: 8211, Mismatches: 1590, Indels: 1014
0.76 0.15 0.09
Matches are distributed among these distances:
877 115 0.01
878 535 0.07
880 2 0.00
882 1 0.00
883 9 0.00
884 21 0.00
885 240 0.03
886 248 0.03
887 182 0.02
888 63 0.01
889 252 0.03
890 9 0.00
891 4 0.00
892 16 0.00
893 58 0.01
894 1080 0.13
895 139 0.02
896 117 0.01
897 458 0.06
898 311 0.04
899 299 0.04
900 45 0.01
901 169 0.02
902 404 0.05
903 920 0.11
904 368 0.04
905 312 0.04
906 9 0.00
907 133 0.02
908 352 0.04
909 323 0.04
910 5 0.00
911 5 0.00
912 11 0.00
913 12 0.00
915 10 0.00
916 7 0.00
917 5 0.00
918 18 0.00
919 36 0.00
920 21 0.00
921 3 0.00
922 65 0.01
923 17 0.00
924 4 0.00
926 6 0.00
927 1 0.00
928 2 0.00
930 3 0.00
931 3 0.00
932 16 0.00
933 4 0.00
934 15 0.00
935 1 0.00
936 9 0.00
937 1 0.00
938 2 0.00
939 4 0.00
940 9 0.00
942 5 0.00
943 9 0.00
944 5 0.00
945 1 0.00
946 3 0.00
949 1 0.00
950 1 0.00
951 2 0.00
953 3 0.00
954 7 0.00
955 8 0.00
956 11 0.00
957 6 0.00
958 9 0.00
959 9 0.00
960 9 0.00
961 17 0.00
962 19 0.00
963 31 0.00
964 22 0.00
965 14 0.00
966 22 0.00
967 13 0.00
968 10 0.00
973 2 0.00
974 8 0.00
975 11 0.00
976 11 0.00
977 5 0.00
978 5 0.00
979 3 0.00
980 10 0.00
981 1 0.00
982 12 0.00
983 22 0.00
984 28 0.00
985 18 0.00
986 20 0.00
987 17 0.00
988 13 0.00
989 4 0.00
990 8 0.00
991 12 0.00
992 11 0.00
993 12 0.00
994 29 0.00
995 6 0.00
996 7 0.00
997 16 0.00
998 11 0.00
999 7 0.00
1000 1 0.00
1001 9 0.00
1002 1 0.00
1003 20 0.00
1004 9 0.00
1005 18 0.00
1006 1 0.00
1007 1 0.00
1008 1 0.00
1009 1 0.00
1013 3 0.00
1014 4 0.00
1015 10 0.00
1016 22 0.00
1017 22 0.00
1018 2 0.00
1019 2 0.00
1020 6 0.00
1021 3 0.00
1022 5 0.00
1023 13 0.00
1024 4 0.00
1025 4 0.00
1026 5 0.00
1027 9 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
GTAGTGTCCGCCCGCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCGACCAGACTGAGGGTTGCGGCAGTAGGATCGACAGCACGTAGAGGGGGACCC
GACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGG
GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
CGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTC
TTCGTCGGGGCACCATCCCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGCGA
TCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
CTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCGAACCG
Found at i:801520 original size:26 final size:26
Alignment explanation
Indices: 801489--801541 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
801479 GTTGACTTAG
801489 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
801515 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
801541 G
1 G
801542 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:803271 original size:26 final size:26
Alignment explanation
Indices: 803220--803272 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
803210 ATTGACTTAG
* *
803220 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGAAGTTCATTCCCAACCTAA
*
803246 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAACCTAA
803272 G
1 G
803273 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAACCTAA
Found at i:804164 original size:26 final size:26
Alignment explanation
Indices: 804128--804180 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
804118 GTTGACTTAG
*
804128 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
*
804154 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
804180 G
1 G
804181 ATCAGATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:805083 original size:26 final size:26
Alignment explanation
Indices: 805032--805084 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
805022 ATTGACTTAG
* *
805032 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGAAGTTCATTCCCAACCTAA
*
805058 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAACCTAA
805084 G
1 G
805085 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAACCTAA
Found at i:805963 original size:26 final size:26
Alignment explanation
Indices: 805927--805976 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
805917 TTGACTTAGG
*
805927 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATACCCAGTCTAAC
*
805953 CATATGGAGTTCATACCCAGTCTA
1 CATACGGAGTTCATACCCAGTCTA
805977 GGATCGGACT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (26 bp):
CATACGGAGTTCATACCCAGTCTAAC
Found at i:806128 original size:903 final size:895
Alignment explanation
Indices: 802416--807602 Score: 6790
Period size: 903 Copynumber: 5.8 Consensus size: 895
802406 GGATCGGACC
* ** * * * * *
802416 GCATGTGTTGGTGCCGCATTTTTCGTCGCCAGGGTA-CATCATCGGTGCATCACAGGAAAACCTG
1 GCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCAC-CGAAAACCTG
* * * *
802480 ACTGGCGGCA-TGGGGTTCCG-GCAAT-CAGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGA
65 ACCGACGGCATTAGGGTTCCGAG--ATGCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
*
802541 TGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
128 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * * *
802606 CCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAAAGGG
193 CCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
802671 GATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTGTGC
258 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * *
802736 ATGCCCAAAAAAATACAAGGATCATGTCTACAAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATT
323 ATGCCAAAAAAAATACAAGGATCATCTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAATT
* * *
802801 TTAAAAAATCCCGCACCGCAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCC
388 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
802866 ATGTAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCCTTG
453 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
802931 GCACGTAGAAATATGAAGATGTGCCTAAACCCA-CTAACCACCCTATCGATCCATGGCTTGCGCA
518 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCT-ACCACCCTATCGATCCACGGCTTGCGCA
*
802995 TGCCGTCTCTCTGGCC-AGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCT
582 TCCCGTCTCTCTGGCCGAGCGTAGT----GCCCGCCCG-CCGC-CGCTCGTTTCGTCGGTTGGCT
* *
803059 TAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATTG
641 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATCG
*
803124 ACAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTC-GACCGGCTGAG
706 -CAGCACGCAGAGGGGGACCCGACCGATCCCGA-CTTGCGCATCCCGCCCCTCTGACCGGCTGAG
* *
803188 CACCTGCACGCTCATTTCATGGATTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCATACG
769 CACCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCATACG
**
803253 AAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGG
834 AAGTTCATTCCCAATCTAAGATCAGAT-GGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGG
* * * *
803316 GCATGTGTTGGTGCCGCATTTTTCTTCGTCAGGGCAGCATCGTCAGAGCATCACCGAAAAACCTG
1 GCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCG-AAAACCTG
*
803381 ACCGACGGCATTAGGGTTCCGGTGAT-CGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
65 ACCGACGGCATTAGGGTTCC-GAGATGCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* * *
803445 GGGTGCTAGTACTTGGCCCTTTTATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
129 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
803510 CCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
194 CCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
803575 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATGTTTTTGTGCA
259 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
** * *
803640 TGCTGAGAAAAATACAAGGATCATCTCTACCAAGTTTGGGGCCAAAACTCCTTCGGAAAAAATTT
324 TGCCAAAAAAAATACAAGGATCATCTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAATTT
* ** *
803705 TAAAAAATCCCGAACCGCATAAAGTTTCAAAAATTGTGAAAGATAGAAAACGAGTCGTCTTGCCA
389 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
803770 TGAAACTTCACGTGAAAGCTTAAGGGACCATTTTATGAATTT-CAAAGCCATAAAAATGGCATTG
454 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC-AAGCCATAAAAATGGCATTG
** *
803834 GCTTGCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
518 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * **
803899 CCCGTCTCTCTGGCCGTTGTAGTGCCT-GCCCGCCCGCCCGCCCGCCCGCTTGTTTCGTCATTTG
583 CCCGTCTCTCTGGCC---G-A--GCGTAG--TGCCCGCCCG-CCG-CCGCTCGTTTCGTCGGTTG
* * * ** * *
803963 GCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCAAACCAGATTGAGGGTTGCAGTAGCAGGA
638 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGA
** * * * * *
804028 TCGGTGGCACGTAGAGGGGGATCCGGCCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGACT
703 TC-GCAGCACGCAGAGGGGGACCCGACCGATCCC-GACTTGCGCATCCCGCCCCTCTGACCGGCT
** * * *
804093 GAGCACCCACACCCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCAT
766 GAGCACCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCAT
* * * * * *
804158 AC-AGAGTTCATTCCCAGTCTAAGATCAGATTAGACCAAGGGTT--ATGACCGCATATACTGGGC
831 ACGA-AGTTCATTCCCAATCTAAGATCAGA-TGGACCGAGGGTTGCA-G-CAGCACATGCTGGGC
804220 TCGG
892 TCGG
* * ** * *
804224 GCATGTGTTGGTGCCACATTTTTTTTCATCGGGAAACCATCGCCGGAGCATCACCGGAGAACCTG
1 GCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACC-GAAAACCTG
* ** * * *
804289 ACCGGCAACATT-GAGGTTCTGAGGAT-CGGGGTGGCCGGGGGGGTCTGCGCACATGATGTGCGA
65 ACCGACGGCATTAG-GGTTCCGA-GATGCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
* * * *
804352 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTTGAGAACTGACGCC
128 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
804417 CCC-TAAAAGAGCATTTGAGATTTTATAGGTTTGCTGCGAGTAGCCATTAAAGTGTCTGAAAATG
193 CCCTTAAAA-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATG
*
804481 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTTTGT
256 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
804546 GCATGCCAAAAAAAATACAAGGATCATGTCTACCATGTTTGGGGCAAAAACTCATTCTA-AAAAA
321 GCATGCCAAAAAAAATACAAGGATCATCTCTACCAAGTTTGGGGCCAAAACTCCTTC-AGAAAAA
* * *
804610 ATTTTAAAAAATCCCGAACTGCAAAAAGTTTCGAAAATCATTAAAAATAGAAAACGAGTCGTCTT
385 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
804675 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCC
450 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
804740 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCA-CTAACCACCCTATCGATCCATGGCTTGC
515 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT-ACCACCCTATCGATCCACGGCTTGC
* *
804804 GCATGCCGTCTCTCTGGCC-AGCGTAGTGCCCGCCCGCCCGCTCGCTCGCTCGTTTTGTCGGTTG
579 GCATCCCGTCTCTCTGGCCGAGCGTAGT----GCCCGCCCGC-CGC-CGCTCGTTTCGTCGGTTG
*
804868 GCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGA
638 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGA
* * *
804933 TTGACAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGTATCCCGCCCCTC-GACCGGCT
703 TCG-CAGCACGCAGAGGGGGACCCGACCGATCCCGA-CTTGCGCATCCCGCCCCTCTGACCGGCT
* *
804997 GAGCACCTGCACGCTCATTTCATGGATTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCAT
766 GAGCACCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCAT
* **
805062 ACGAAGTTCATTCCCAATCTAAGATCAGATCGAACCGAGGGTTGTGGCAGCACATGCTGGGCTCG
831 ACGAAGTTCATTCCCAATCTAAGATCAGAT-GGACCGAGGGTTGCAGCAGCACATGCTGGGCTCG
805127 G
895 G
* * *
805128 GCATGTGTTGGTGCCGCATTTTTCTTCGT-GAGGGCAGCATCGTCAGAGCATCACCGAAAAACCT
1 GCATGTGTTGGTGCCGCATTTTTCTTCATCG-GGGCACCATCGTCGGAGCATCACCG-AAAACCT
*
805192 GACCGACGGCATTAGGGTTCCGGTGAT-CGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
64 GACCGACGGCATTAGGGTTCC-GAGATGCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
* * *
805256 TGGGTGCTAGTACTTGGCCCTTTTATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
128 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
805321 CCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
193 CCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
805386 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATGTTTTTGTGC
258 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
** *
805451 ATGCTGAGAAAAATACAAGGATCATCTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAATT
323 ATGCCAAAAAAAATACAAGGATCATCTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAATT
* * ** * *
805516 TTAAAAAATCTCGAACCGCATAAAGTTTCAAAAATTGTGAAAGATAGAAAACGAGTCATCTTGCC
388 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
805581 ATGAAACTTCACGTGAAAGCTTAAGGGACCATTTTATGAATTT-CAAAGCCATAAAAATGGCATT
453 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC-AAGCCATAAAAATGGCATT
** *
805645 GGCTTGCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
517 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
805710 TCCCGTCTCTCAGGCCGA-CATAGTGCCCGCCCG-C-CCGCTCGTTTGGTCGGTTGGCTTAGGCA
582 TCCCGTCTCTCTGGCCGAGCGTAGTGCCCGCCCGCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * *
805772 TACGGAGTTCATTCCTAGTGTAAGATCGGATCGGATCGAGGGTTGCGGCAGTAGGATCGCAGCAC
647 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATCGCAGCAC
* * ** * *
805837 GTAGA-AGGGACCCGACCGATCCTCGACTTATGCATCCCGCCCTTCTGGCCGGCTGAGCACCTGC
712 GCAGAGGGGGACCCGACCGATCC-CGACTTGCGCATCCCGCCCCTCTGACCGGCTGAGCACCTGC
** * * * *
805901 ACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATATGGAGTTCA
776 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCATACGAAGTTCA
* * * * * * *
805966 TACCCAGTCTAGGATCGGACTGGACCGAGGGTTACAGAAGCACATGCTGGGCTTGG
841 TTCCCAATCTAAGATCAGA-TGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGG
* ** *
806022 GCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCCCCGCCAGAAAACCTG
1 GCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACC-GAAAACCTG
* * * * * *
806087 ACAGTCGGCATTGGGGTTCCGACGAT-CGGGGGGGCCGGGGGGGTGTGCACAGATGATGTACGAT
65 ACCGACGGCATTAGGGTTCCGA-GATGCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* * *
806151 GGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTCACACCT
129 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
** *** * *
806216 CCTTAAGGAGTGCTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAACTGTCTGAAATGGGG
194 CCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
806281 ATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTTAGCTGAATTTTTTTGTGCC
259 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
806346 TGCCAAAAAAAATACAAGTATCACCTCTACTAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATT
324 TGCCAAAAAAAATACAAGGATCATCTCTACCAAGTTTGGGGCCAAAACTCC-TTCAGAAAAAATT
* ** *
806410 TAAAAAAATCATGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
388 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
806475 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCCTTG
453 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
806540 GCACGCATAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCACAGCTTGCGCAT
518 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
*
806605 CCCGTCTCTCTGGCCG-GCGTAGTGCCCGCCAGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTT
583 CCCGTCTCTCTGGCCGAGCGTAGTG--C-CC-GCCCG-CCGCC-GCTCGTTTCGTCGGTTGGCTT
* * * * *
806669 AGGCATACGGAGTTCATTCTCAGTCTAAGAT-AGGACTGGACCGAGGGTTGCGGCAGCAGTATCG
642 AGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCGGACCGAGGGTTGCGGTAGTAGGATCG
* * * *
806733 CAGCACACAGAGGGGGACTC-AGCCGATCCCCGGCTTGCGCATACCGCCCCTCTGACCGGCTGAG
706 CAGCACGCAGAGGGGGACCCGA-CCGAT-CCCGACTTGCGCATCCCGCCCCTCTGACCGGCTGAG
* * * * * *
806797 GACCCGCA-GACTCGTTTTGTGGGTTGACTTAGGCATACTGAGTTCATTCCCAGTCTAAG-AT-C
769 CACCTGCACG-CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCATAC
* *
806859 G--G---A----C---C--AGA-C---T-GA---A-GATTGCAGCAGCACATGCTGGGCTCGA
833 GAAGTTCATTCCCAATCTAAGATCAGATGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGG
*
806899 GCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCAT-GATCGGAGCATCACCGGAGAACCT
1 GCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCG-TCGGAGCATCACC-GAAAACCT
* * * * * *
806963 GATCGACGGCATTAAGGTTCCGACGAT-TGGGGGGGCCGGGGAGGGTGGGCACACATGATGTGTG
64 GACCGACGGCATTAGGGTTCCGA-GATGCGGGGGGGCCGGGG-GGGTGTGCGCACATGATGTGCG
* *
807027 ATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
127 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
807092 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
192 CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
807157 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTTGTG
257 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
807222 TATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
322 CATGCCAAAAAAAATACAAGGATCATCTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAAT
** ** *
807287 TTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
387 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * * * *
807352 CATGAAACTTCACGTGAAGGCTTAAGCGACAATTGGATGAAGTTAAAAGCCATAAAAATGGCATT
452 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
807417 GGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACAGCTTGCGCA
517 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * *
807482 TCCCGTTTCTCTGGCCG-GCGTAGTGCCCGCCTGCCTGCCCGTCCGCACATTTCATCGGTTGGCA
582 TCCCGTCTCTCTGGCCGAGCGTAGTGCCCG-C--CC-G-CCG-CCGCTCGTTTCGTCGGTTGGCT
*
807546 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGGGGTAG
641 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAG
807603 CACATGCTGG
Statistics
Matches: 3779, Mismatches: 422, Indels: 194
0.86 0.10 0.04
Matches are distributed among these distances:
874 1 0.00
875 3 0.00
876 2 0.00
877 118 0.03
878 531 0.14
879 3 0.00
881 2 0.00
882 1 0.00
886 1 0.00
887 2 0.00
889 1 0.00
892 1 0.00
893 32 0.01
894 665 0.18
895 84 0.02
896 3 0.00
897 3 0.00
898 5 0.00
899 10 0.00
900 35 0.01
901 33 0.01
902 111 0.03
903 863 0.23
904 340 0.09
905 135 0.04
907 139 0.04
908 335 0.09
909 316 0.08
910 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
GCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGAAAACCTGA
CCGACGGCATTAGGGTTCCGAGATGCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAAAAAAAATACAAGGATCATCTCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAATTTTA
AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGAGCGTAGTGCCCGCCCGCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATCGCAGCACGCAG
AGGGGGACCCGACCGATCCCGACTTGCGCATCCCGCCCCTCTGACCGGCTGAGCACCTGCACGCT
CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCATACGAAGTTCATTCCC
AATCTAAGATCAGATGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGG
Found at i:808640 original size:26 final size:26
Alignment explanation
Indices: 808611--808663 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
808601 GTTGACTTAG
808611 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
* *
808637 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
808663 G
1 G
808664 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:809535 original size:26 final size:26
Alignment explanation
Indices: 809506--809558 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
809496 GTTGACTTAG
*
809506 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
809532 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
809558 G
1 G
809559 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:811129 original size:26 final size:26
Alignment explanation
Indices: 811093--811145 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
811083 GTTGACTTAG
* *
811093 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
811119 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
811145 G
1 G
811146 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:811775 original size:896 final size:898
Alignment explanation
Indices: 809971--812098 Score: 2899
Period size: 896 Copynumber: 2.4 Consensus size: 898
809961 AGGGCCAAAA
* ** * * * * * *
809971 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGGCCGCCCGTCCG-CCGCTCGTTTCGTCAGTTGTCT
1 ATCCCGTCTCTCTGGCC-GAGTAGT-AAC-GCCGCCCGCCCGCCCACTCATTTCATCGGTTGGCT
* * * ** *
810035 TAGGCATACGGAGTTCATTCCGAGTCTAAGATCAGATCAGACCGAGGGTTGTGGTAGCAGGATCG
63 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTCT-ACAACAGGATCG
* * ** * * *
810100 ACAGCACACAGAGGGGGACTTGGCTAATCCCCGAGTTGTGCATCCCGCCCCTCTGGCCGGTAGAG
127 ACAGCACACAGAGGGGGACCTGACCGATCCCCGACTTGTGCATCCCACCCCTCTGGCCGCT-GAG
* * **
810165 CACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATATG
191 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-AGTCTAAGCATACA
* * *
810230 GAGTTGATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
255 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGAGTTACGGCAGCACATGCTGGGCTCGGGC
* * * * *
810295 ATGTTTTGGTTCCGTATTTTTCTTCGCCGGGGCACCATCATCGGAACATCACAGGAGAACCTGAC
320 ATGTGTTGCTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAACATCACAGGAGAACCTGAC
* * ** * *
810360 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGG
385 CGACGGCATTAGGGTTCCGACGATCGGAGGCACCGGGGGGGTGTGCACACATGATGTGCGATGGG
* * *
810425 TGCTACTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTTGAGAGCTCACACCCCGT
450 TGCTACTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCGT
* * * *
810490 TAAAGTGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGGCATTAAAGTGCCTAAAATGGGGACA
515 TAAAGAGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGCCTAAAATGGGGACA
* * * ** *
810555 CTTTTTTCAACTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGC
580 CTTTTTCCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATAGTTTTATGCATGC
** *
810620 CAACAAAAATACAAGGATCACGTCTACCAATTTTAGGAAAAAAAATCCTTCTGAAAAAATTTTGA
645 CAACAAAAATACAAGGATCACGTCTACCAAGATTAGGAAAAAAAATCCTTCTGAAAAAATTTTAA
* *
810685 AAAATCCCATACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
710 AAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
810750 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
775 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *
810815 ACAGAAATATGAAGATGTACCTAAACCCACCTACCAACCTATCGATCCACGGCTTGCAC
840 ACAGAAATATGAAGATGTACATAAACACACCTACCAACCTATCGATCCACAGCTTGCAC
* *
810874 ATCCCGTCTTTCTGGCCG-GT-GT-A-G-TGCCCGCCCGCCCACTCATTTCATCGGTTGGCTTAG
1 ATCCCGTCTCTCTGGCCGAGTAGTAACGCCGCCCGCCCGCCCACTCATTTCATCGGTTGGCTTAG
810934 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACTACAACAGGATCGACA
66 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT-CTACAACAGGATCGACA
* * * * *
810999 GCACCCAAAGGGGGACCCGATCGATCCCCGACTTGTGCATCCCTCCCCTCTGGCCGACTGAGCAC
130 GCACACAGAGGGGGACCTGACCGATCCCCGACTTGTGCATCCCACCCCTCTGGCCG-CTGAGCAC
811064 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCGCAGTCTAAGCATACAGAG
194 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC-CAGTCTAAGCATACAGAG
* * *
811129 TTCATTCCCAGTCTAAGATCGGATCGGACCGAGAGTTATGGCAGCACATGTTGGGCTCGGGCATG
258 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGAGTTACGGCAGCACATGCTGGGCTCGGGCATG
* * * * *
811194 TGTTGCTGCTGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA
323 TGTTGCTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAACATCACAGGAGAACCTGACCGA
*
811259 CGGCATTAGGGTTTCGACGATCGGAGGCACCGGGGGGGTGTGCACACATGATGTGCGATGGGTGC
388 CGGCATTAGGGTTCCGACGATCGGAGGCACCGGGGGGGTGTGCACACATGATGTGCGATGGGTGC
** * *
811324 TGGTACTTGGCGCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAA
453 TACTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCGTTAA
*
811389 AGAGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
518 AGAGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGCCTAAAATGGGGACACTT
* *
811454 TTTCCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATAGTTTTATGCATGCCAA
583 TTTCCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATAGTTTTATGCATGCCAA
* *** *
811519 CAAAAATACAAGGATCACGTCTACCAAGATTGGGGCTAAAACTCCTT-TCGAAAAAATTTTAAAA
648 CAAAAATACAAGGATCACGTCTACCAAGATTAGGAAAAAAAATCCTTCT-GAAAAAATTTTAAAA
* * *
811583 AATCTCAAACCGTAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
712 AATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
811648 CTTCACATGAAGGTTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCACAC
777 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
* * ** * *
811713 AGAAATATGAAGATGTGCATAAATATGCCTACCACCCTATCGATCCACAGCTTGCGC
842 AGAAATATGAAGATGTACATAAACACACCTACCAACCTATCGATCCACAGCTTGCAC
* * * *
811770 ATCCCGTCTCTCTGGTCGACGTAGTAACCGCCCGTCCGCCCGCCCGCTCATTTCGTCGGTTGGCT
1 ATCCCGTCTCTCTGGCCGA-GTAGTAA-CG-CCGCCCGCCCGCCCACTCATTTCATCGGTTGGCT
* *
811835 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAACAGGATCG
63 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT-CTACAACAGGATC-
* ** * * *
811900 GGA-AG-ACGCAGAGGGGGACCTGACCGATCCATTG-TTTGTGCATCTCACCCCTCTGGCCGGTT
126 -GACAGCACACAGAGGGGGACCTGACCGATCC-CCGACTTGTGCATCCCACCCCTCTGGCC-GCT
* *
811962 GAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCAT
188 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCAT
* * * ** * * *
812027 GCAGAGTTCATTCCCAGTCTAAGATCAGACTGGATTGAGGGTTACGGTAGCACATGCTGGGCACG
252 ACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGAGTTACGGCAGCACATGCTGGGCTCG
*
812092 AGCATGT
317 GGCATGT
812099 AGAAATATTA
Statistics
Matches: 1076, Mismatches: 131, Indels: 35
0.87 0.11 0.03
Matches are distributed among these distances:
895 9 0.01
896 776 0.72
897 3 0.00
898 2 0.00
899 2 0.00
900 3 0.00
901 2 0.00
902 2 0.00
903 16 0.01
904 254 0.24
905 5 0.00
906 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
ATCCCGTCTCTCTGGCCGAGTAGTAACGCCGCCCGCCCGCCCACTCATTTCATCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTCTACAACAGGATCGACAG
CACACAGAGGGGGACCTGACCGATCCCCGACTTGTGCATCCCACCCCTCTGGCCGCTGAGCACCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACAGAGTTC
ATTCCCAGTCTAAGATCGGACCGGACCGAGAGTTACGGCAGCACATGCTGGGCTCGGGCATGTGT
TGCTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAACATCACAGGAGAACCTGACCGACGG
CATTAGGGTTCCGACGATCGGAGGCACCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTAC
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCGTTAAAGA
GCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGCCTAAAATGGGGACACTTTTT
CCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATAGTTTTATGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGATTAGGAAAAAAAATCCTTCTGAAAAAATTTTAAAAAATC
CCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
ATATGAAGATGTACATAAACACACCTACCAACCTATCGATCCACAGCTTGCAC
Found at i:812026 original size:26 final size:26
Alignment explanation
Indices: 811997--812049 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
811987 GTTGACTTAG
* *
811997 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
812023 GCATGCAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
812049 G
1 G
812050 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:812270 original size:26 final size:26
Alignment explanation
Indices: 812233--812285 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
812223 GTTGACTTAG
812233 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
812259 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
812285 G
1 G
812286 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:814444 original size:870 final size:872
Alignment explanation
Indices: 812724--815032 Score: 3019
Period size: 869 Copynumber: 2.6 Consensus size: 872
812714 CCCAAACCAC
* * * *
812724 AAAAATTTCAAAAATCGTTAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACATGAAGGC
1 AAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * *
812789 TTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTTGAAATATAAAGAT
66 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGAT
* ** *
812854 TTGTATAAACCCACCTACTACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
131 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
*
812919 AGTGCCCGCCCGCCTGCCAGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
196 AGT---CGCCCGCC-GCC-GCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * * * * *
812984 AATCTAATATTGGATCGAATCGAGTGTTACGACAGTAGGATTGGTAGCTCGCAGAGAGGGACCCG
256 AGTCTAAGATTGGACCGGATCGAGGGTTACGACAGCAGGATCGGTAGCACGCAGAGGGGGACCCG
* * * * * * * *
813049 ATCGATCCCCGGCTTGTGCATCCTGCCCTTCTGGCCAGTTGAGTGCCCGTACACTCGTTTCGTGG
321 ATCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCAGCTGAGCGCCCGTACGCTCGTTTCATGG
* * *
813114 GTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTCCATTCCCAGTCTAAGAT
386 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAAAT
* * * * * *
813179 CGGACCGGACCGTGGGTTGCGACAGCACATGCTGGGCTCAGGCAAGTGTTGGTGCTGCATTTTTC
451 CGGACCGGACCGAGGGTTACGATAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTC
* * * * * **
813244 -TCTACCGAGGCACCATTGTCGGGGCATCGCCGGAGAACCTGACCAGCGGCATTGGCGTTCCGGT
516 TTC-ACCGAGGCACCATCGCCCGAGCATCGCCGAAGAACCTGACCAGCGGCATTGGCGTTCCGAC
* *
813308 GATCGGGAGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
580 GATCGGGAGGGCCAGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTAAA
* *
813373 TTGGCCCCCTATCTCTTATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTA
645 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTA
* * * * *
813438 GAGGTTTACTGCCAGTAGTCGTTAAAGTGTCTGAAATGGGGACACTTTTTACAAATGGTCACAAA
710 CAGGTTCACTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTACAAATGGTCACAAA
* *
813503 ATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
775 ATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
813568 GTCTACCAAGGTTAGGGCCGAAAA-TCCTTCCGA
840 GTCTACCAA-GTTAGGGCCGAAAAGTCCTTCCGA
*
813601 AAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGC
1 AAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * *
813666 GTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
66 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGAT
* *
813731 GTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
131 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
*
813796 AGT-GCCCG-C-CCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGCCT
196 AGTCGCCCGCCGCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
** *
813858 AAGATCAGACCGGATCGAGGGTTACGACAGCAGGATCGGTAGCACGTAGAGGGGGACCCGATCGA
261 AAGATTGGACCGGATCGAGGGTTACGACAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGA
** * * * *
813923 TCCCCAACTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGAACGTTCATTTCATGGGTTGA
326 TCCCCGGCTTGCGCATCCCGCCCCTCTAGCCAGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGA
*
813988 CTTAGGCATACGGAGTTCATTCCCAGTCCAAGCATATGGAGTTCATTCCCAGTCTAAAATCGGAC
391 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAAATCGGAC
* * * * *
814053 CGGACCGAGGGTAACGATAGCACATGCTGGGCTCGGGGATGTGCTGGTGCCACAATTTTCTTCAC
456 CGGACCGAGGGTTACGATAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCAC
* * * *
814118 TGAGGCACCATCGCCCGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGG
521 CGAGGCACCATCGCCCGAGCATCGCCGAAGAACCTGACCAGCGGCATTGGCGTTCCGACGATCGG
* * *
814183 GGGGGCCGGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGTCCCTTAAATTGGC
586 GAGGGCC-AGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTAAATTGGC
* * *
814248 CCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACCGGT
650 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGT
* *
814313 TCGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
715 TCACTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTACAAATGGTCACAAAATCTT
* * *
814378 GTACAGTTCGAGTTTTTTGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTA
780 GTACACTTCGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * *
814443 CCAAGTTTGGGGCTAAAAGTCCTTCTGA
845 CCAAGTTAGGGCCGAAAAGTCCTTCCGA
*
814471 AAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCA
1 AAAAA--TT------T-------C--AAAAA---TC----AT-G--AAAAATAGAAAACGAGTCG
** *
814536 TCTTGCCATGAAAAATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAA
39 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
814601 GGCATTGGCATGTAGAAATTTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATGCACGGCT
104 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
814666 TGCGCATCCCATCTCTCTCGTCGACGTAGTGCCCGCCCGCCCGTCCGCCCGTCCACCCGCTCGTT
169 TGCGCATCCCGTCTCTCTGGCCGACGTAGT---CGCCCG-CCG-CCG--C--CCA----CTCGTT
* * * *
814731 TCGTCGGTTGGCTTAGGCATACGGAGTTAATTGCCAGTCTAAGATTGGACTGGA-CTGAGGGTTG
221 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATC-GAGGGTTA
* * * * *
814795 CGGCAGCAGGATCGATAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCGTCCCGCCCC
285 CGACAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCC
* * * *
814860 TCCAGCCTGCTGAGCACCTGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
350 TCTAGCCAGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * * *
814925 AGTCTAAGCATACGGAGTTCATTCCTAGTCTAAAATCGGATCGGACCGAGCGTTACGGTAGCACA
415 AGTCTAAGCATATGGAGTTCATTCCCAGTCTAAAATCGGACCGGACCGAGGGTTACGATAGCACA
814990 TGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCG
480 TGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCG
815033 GGCCGGGGGG
Statistics
Matches: 1239, Mismatches: 146, Indels: 58
0.86 0.10 0.04
Matches are distributed among these distances:
869 336 0.27
870 252 0.20
872 3 0.00
873 5 0.00
877 181 0.15
878 1 0.00
885 1 0.00
887 5 0.00
890 2 0.00
894 2 0.00
895 1 0.00
897 164 0.13
901 5 0.00
903 1 0.00
905 3 0.00
907 1 0.00
909 3 0.00
912 1 0.00
913 272 0.22
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (872 bp):
AAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGAT
GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
AGTCGCCCGCCGCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
AAGATTGGACCGGATCGAGGGTTACGACAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGA
TCCCCGGCTTGCGCATCCCGCCCCTCTAGCCAGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGA
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAAATCGGAC
CGGACCGAGGGTTACGATAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCAC
CGAGGCACCATCGCCCGAGCATCGCCGAAGAACCTGACCAGCGGCATTGGCGTTCCGACGATCGG
GAGGGCCAGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTAAATTGGCC
CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTT
CACTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTACAAATGGTCACAAAATCTTG
TACACTTCGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
CAAGTTAGGGCCGAAAAGTCCTTCCGA
Found at i:814936 original size:26 final size:26
Alignment explanation
Indices: 814906--814957 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
814896 GTTGACTTAG
814906 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
814932 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
814958 AATCGGATCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:815773 original size:26 final size:26
Alignment explanation
Indices: 815737--815789 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
815727 CTTCACTTAG
815737 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
815763 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
815789 G
1 G
815790 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:815878 original size:845 final size:848
Alignment explanation
Indices: 814191--816771 Score: 3332
Period size: 845 Copynumber: 3.0 Consensus size: 848
814181 GGGGGGGCCG
* * *
814191 GGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGTCCCTTAAATTGGCCCCCTATC
1 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
814256 CCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACCGGTTCGCTACC
66 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
814321 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTT
131 AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
814386 CGAGTTTTTTGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT
196 CGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * * **
814451 GGGGCTAAAAGTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGT
261 GGGGCCAAAACTCATT-TCAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGT
* * *
814516 AAAAAATAGAAAACGAGTCATCTTGCCATGAAAAATCACGTGAAGGCTTAAGGGACCATTGTATG
325 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAAATTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
814581 AATTTACAAGCCATAAAAAAGGCATTGGCATGTAGAAATTTGAAGATGTGCCTAAACCCACCTAC
390 AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
814646 CACCCTATCGATGCACGGCTTGCGCATCCCATCTCTCTCGTCGACGTAGTGCCCGCCCGCCCGTC
455 CACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGT----G-CC-CAC--C
* *
814711 CGCCCGTCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTA-ATTGCCAGTCTAAGA
512 CGCCCGT----CCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAG-TACATTCCCAGTCTAAGA
* * * * *
814775 T-TGGACTGGACTGAGGGTTGCGGCAGCAGGATCGATAGCACACAGAGGGGGACCCGGTCGATCC
572 TCT-GACTGGACTGAGGGTTGAGGAAGCAGGATCGACAGCACATAGAGGGGGACCCGGCCGATCC
* ** * * * * *
814839 CCGGCTTGCGCGTCCCGCCCCTCCAGCCTGCTGAGCACCTGTACGCTCGTTTCATGGGTTGACTT
636 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTACCCGCACGCTCGTTTCGTGGGTTGACTT
* * *
814904 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAAATCGGATCGG
701 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGG
* *
814969 ACCGAGCGTTACGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTC-T------
766 ACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCAGCATTTTTCTTCGCCGG
815027 ------TCACCGG-G-CC
831 GGCCCATCACCGGAGACC
* * *
815037 -GGGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTGGCTCTTATATTGGCCCCTTATC
1 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
815101 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
66 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
815166 AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
131 AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
**
815231 CGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAAGAAGTTT
196 CGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
**
815296 GGGGCCAAAACTCATTTCAAAAAAGTTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGT
261 GGGGCCAAAACTCATTTCAAAAAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGT
* *
815361 GAAAAATAGAAAATGAGTCGTCTTGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATG
325 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAAATTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
815426 AATTTACAAGCCATAAAAATGGCATTAGCATGCAGAAATATGAAGATGTACCTAAACCCACCTAC
390 AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
*
815491 CACCCTATCGATCCACGGCTCGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCACCCGCCCGTC
455 CACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCACCCGCCCGTC
* * *
815556 CGCTCGTTTCGTTAGTT-GCTTAGGCGTACGGAGTACATTCCCAGTCTAAGATCTGACCGGACTG
520 CGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTACATTCCCAGTCTAAGATCTGACTGGACTG
* * *
815620 AGGGTTGTGGTAGTAGGATCGACAGCACATAGAGGGGGACCCGGCCGATCCCCGGCTT-CGCATC
585 AGGGTTGAGGAAGCAGGATCGACAGCACATAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATC
* * * *
815684 CTGCCCCTCTGGCCGGTTGAGTACCCGCACGCTCGTTTCGTGGCTTCACTTAGGCATACGGAGTT
650 CCGCCCCTCTGGCCGGCTGAGTACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
815749 CATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACGG
715 CATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACGG
*
815814 TAGCACATGCTGGGCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCACCGG
780 TAGCACATGCTGGGCTCGGGCATGTGTTGGTGCAGCATTTTTCTTCGCCGGGGC-CCATCACC-G
815879 AGAACCTGACC
843 -G-A---GACC
815890 GGTGGCATTGGGGTTTCGACGATCGGGCGGGCCGGGAGGTTGTGTGCACATGATGTGCGATGGGT
1 -G-GG----GGGG--T----G-T-------G-C------------GCACATGATGTGCGATGGGT
* *
815955 GCTGGCACTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
33 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
816020 AAAGGGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACAC
98 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
* * * *
816085 TTTTTTCAAATGGTCACAAAATCTTGTACACGTCGAGTTTTTCGTTGAATTTTTTTGTGCATGCC
163 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCC
* * *
816150 AACAAAAATACAAGGATCACGTCTACCAAATTTGGGGCCAAAACTCATTCCGAAAAAATTTTAAC
228 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCATTTC-AAAAAATTTTAAA
*
816215 AAATCCAGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
292 AAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
816280 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTTCAAGCCATAAAAATGGAATTGGCAT
357 AATTCACGTGAAGGCTTAAGGGACCATTGTATGAA-TTTACAAGCCATAAAAATGGCATTGGCAT
* * * *
816345 GTAGAAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCACGACTTGCGAATCCCG
421 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCA
* * * * * *
816410 TCTCTCTGGCCGGCATAGGGCCCGCCCGCCCGCCCGCTTGTTTCGTCAGTTGGCTTAGGCATACG
486 TCTCTCTGGCCGACGTAGTGCCCACCCGCCCGTCCGCTCGTTTCGTCAGTTGGCTTAGGCATACG
* * * * * * * **
816475 GAGTTCATTCCTAGTCTAAGATCGGATTGGACCGAGGGTTGCAGAAAGCAGGATCGGCAGCATGT
551 GAGTACATTCCCAGTCTAAGATCTGACTGGACTGAGGGTTG-AGGAAGCAGGATCGACAGCACAT
* * * * *
816540 AGAGGGGGACCCGGCCGATCCCCGGTTTGTGCATCCCACCCCTCTGGTCGGCTGAGTGCCCGCAC
615 AGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTACCCGCAC
* * * * * *
816605 GCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTGCCAGTGTAAGCTTACGAAATTCATT
680 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * **
816670 CCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAACACATGCTGGGCTCAAGCATGTG-TGG
745 CCTAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGTTGG
** *
816734 TGCAAAATTTTTCTTCGCCGGGGCCCCATCGCCGGAGA
810 TGCAGCATTTTTCTTCGCCGGGG-CCCATCACCGGAGA
816772 ACCTGACCGG
Statistics
Matches: 1523, Mismatches: 147, Indels: 92
0.86 0.08 0.05
Matches are distributed among these distances:
831 164 0.11
832 92 0.06
833 17 0.01
837 8 0.01
839 2 0.00
840 2 0.00
841 1 0.00
844 7 0.00
845 461 0.30
846 1 0.00
847 1 0.00
852 1 0.00
853 2 0.00
856 2 0.00
860 4 0.00
862 1 0.00
866 1 0.00
867 1 0.00
874 1 0.00
875 1 0.00
884 2 0.00
887 352 0.23
888 135 0.09
889 48 0.03
890 73 0.05
891 143 0.09
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (848 bp):
GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAACTCATTTCAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTG
AAAAATAGAAAACGAGTCGTCTTGCCATGAAAATTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCACCCGCCCGTCC
GCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTACATTCCCAGTCTAAGATCTGACTGGACTGA
GGGTTGAGGAAGCAGGATCGACAGCACATAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCC
CGCCCCTCTGGCCGGCTGAGTACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACGGT
AGCACATGCTGGGCTCGGGCATGTGTTGGTGCAGCATTTTTCTTCGCCGGGGCCCATCACCGGAG
ACC
Found at i:817123 original size:26 final size:26
Alignment explanation
Indices: 817093--817174 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
817083 GTTAACTTAG
*
817093 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
817119 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
817145 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
817171 GCAT
1 GCAT
817175 GGGCTCGGGC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:819024 original size:876 final size:876
Alignment explanation
Indices: 817174--820637 Score: 5831
Period size: 876 Copynumber: 4.0 Consensus size: 876
817164 AGTCTAAGCA
* ** * * * * ** * **
817174 TGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCATCGGGGCACTATCGTCGGAGCATCACCG
1 TGGGCTCGGGCATGTGCTGGTGCTGCATTTCT-TTCGTTGGGGCACCATCACCAGAGCATCATTG
* * ** * * * *
817239 GAGAACCTAACTGACGATATTGGGGTTCCGGCGATC-GGGGCGGCTGGGGGGGTGTGCGCACATG
65 GAGAACCTGACCGACGGCATTAGGGTTTCGACGATCAGGGG-GGCCGGGGGGGTGTGCGCACAT-
** * * *
817303 ATGTGCAATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAA
128 ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAA
* * * * *
817368 CTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTACTAAAGTGTTT
193 ATCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
817433 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTT
258 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
817498 TTTTGTGTATGCCAAAAAAAATCGGAGGATCATGTCTACCAGGTTTTGGGCCAAAAATCCTTCCG
323 TTTTGTGTATACCAAAAAAAATAGGAGGATCATGTCTACCAGGTTTTGGGCCAAAAATCCTTCCG
* *
817563 AAAAAATTTTAAAAAATCTTGAATCGCAAAATGTTTCAAAAATTATGAAAAATAGAAAATGAGTC
388 AAAAAATTTTAAAAAATCTTGAACCGTAAAATGTTTCAAAAATTATGAAAAATAGAAAATGAGTC
817628 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
453 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
817693 TGGCATTGGCAGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCTATCAATCCACGG
518 TGGCATTGGCAGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCCTATCAATCCACGG
817758 TATCTGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCATCG
582 TATCTGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCATCG
817823 GTTGGCTTGGGCATACGAAGTTCATTCCCAGTCTAAGATCACACCAAACCGAGGGTTGCGACAAC
647 GTTGGCTTGGGCATACGAAGTTCATTCCCAGTCTAAGATCACACCAAACCGAGGGTTGCGACAAC
*
817888 AGGATTGCCAGCACGGAGAGGGGGACCCGATCGATCCCCGATTTACACATCCCATCCCTCTGGCC
712 AGGATTGCCAGCACGCAGAGGGGGACCCGATCGATCCCCGATTTACACATCCCATCCCTCTGGCC
817953 GACTGAGCGCTCGCACGCTCTTTTCATGGGTTTACTTAAGCATACGGAGTTCATTCCCAGTCTAA
777 GACTGAGCGCTCGCACGCTCTTTTCATGGGTTTACTTAAGCATACGGAGTTCATTCCCAGTCTAA
818018 GATCGGGCTGGACCGAGTGTTACGGCAGCACATGC
842 GATCGGGCTGGACCGAGTGTTACGGCAGCACATGC
818053 TGGGCTCGGGCATGTGCTGGTGCTGCATTTCTTTCGTTGGGGCACCATCACCAGAGCATCATTGG
1 TGGGCTCGGGCATGTGCTGGTGCTGCATTTCTTTCGTTGGGGCACCATCACCAGAGCATCATTGG
818118 AGAACCTGACCGACGGCATTAGGGTTTCGACGATCAGGGGGGCCGGGGGGGTGTGCGCACATATG
66 AGAACCTGACCGACGGCATTAGGGTTTCGACGATCAGGGGGGCCGGGGGGGTGTGCGCACATATG
818183 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAAATC
131 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAAATC
818248 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
196 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
818313 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
261 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
818378 TGTGTATACCAAAAAAAATAGGAGGATCATGTCTACCAGGTTTTGGGCCAAAAATCCTTCCGAAA
326 TGTGTATACCAAAAAAAATAGGAGGATCATGTCTACCAGGTTTTGGGCCAAAAATCCTTCCGAAA
*
818443 AAATTTTAAAAAATCTTGAACCATAAAATGTTTCAAAAATTATGAAAAATAGAAAATGAGTCGTC
391 AAATTTTAAAAAATCTTGAACCGTAAAATGTTTCAAAAATTATGAAAAATAGAAAATGAGTCGTC
818508 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
456 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
818573 CATTGGCAGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGTATC
521 CATTGGCAGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGTATC
818638 TGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCATCGGTTG
586 TGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCATCGGTTG
*
818703 GCTTGGGCATACGAAGTTCATTCCCAGTCTAAGATCACACCAAACCGAGGGTTGTGACAACAGGA
651 GCTTGGGCATACGAAGTTCATTCCCAGTCTAAGATCACACCAAACCGAGGGTTGCGACAACAGGA
818768 TTGCCAGCACGCAGAGGGGGACCCGATCGATCCCCGATTTACACATCCCATCCCTCTGGCCGACT
716 TTGCCAGCACGCAGAGGGGGACCCGATCGATCCCCGATTTACACATCCCATCCCTCTGGCCGACT
818833 GAGCGCTCGCACGCTCTTTTCATGGGTTTACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
781 GAGCGCTCGCACGCTCTTTTCATGGGTTTACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
818898 GGGCTGGACCGAGTGTTACGGCAGCACATGC
846 GGGCTGGACCGAGTGTTACGGCAGCACATGC
818929 TGGGCTCGGGCATGTGCTGGTGCTGCATTTCTTTCGTTGGGGCACCATCACCAGAGCATCATTGG
1 TGGGCTCGGGCATGTGCTGGTGCTGCATTTCTTTCGTTGGGGCACCATCACCAGAGCATCATTGG
*
818994 AGAACCTGACCGACGGCATTAGGGTTTCGACGATCAGGGGGGCCGGGCGGGTGTGCGCACATATG
66 AGAACCTGACCGACGGCATTAGGGTTTCGACGATCAGGGGGGCCGGGGGGGTGTGCGCACATATG
819059 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAAATC
131 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAAATC
819124 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
196 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
819189 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
261 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
819254 TGTGTATACCAAAAAAAATAGGAGGATCATGTCTACCAGGTTTTGGGCCAAAAATCTTTCCGAAA
326 TGTGTATACCAAAAAAAATAGGAGGATCATGTCTACCAGGTTTTGGGCCAAAAATCCTTCCGAAA
*
819319 AAATTTTAAAAAATCTTGAACCGTAAAATGTTTCAAAAATTATGAAAAATAGATAATGAGTCGTC
391 AAATTTTAAAAAATCTTGAACCGTAAAATGTTTCAAAAATTATGAAAAATAGAAAATGAGTCGTC
819384 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
456 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
819449 CATTGGCAGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGTATC
521 CATTGGCAGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGTATC
819514 TGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCATCGGTTG
586 TGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCATCGGTTG
819579 GCTTGGGCATACGAAGTTCATTCCCAGTCTAAGATCACACCAAACCGAGGGTTGCGACAACAGGA
651 GCTTGGGCATACGAAGTTCATTCCCAGTCTAAGATCACACCAAACCGAGGGTTGCGACAACAGGA
819644 TTGCCAGCACGCAGAGGGGGACCCGATCGATCCCCGATTTACACATCCCATCCCTCTGGCCGACT
716 TTGCCAGCACGCAGAGGGGGACCCGATCGATCCCCGATTTACACATCCCATCCCTCTGGCCGACT
819709 GAGCGCTCGCACGCTCTTTTCATGGGTTTACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
781 GAGCGCTCGCACGCTCTTTTCATGGGTTTACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
819774 GGGCTGGACCGAGTGTTACGGCAGCACATGC
846 GGGCTGGACCGAGTGTTACGGCAGCACATGC
819805 TGGGCTCGGGCATGTGCTGGTGCTGCATTTCTTTTCGTTGGGGCACCATCACCAGAGCATCATTG
1 TGGGCTCGGGCATGTGCTGGTGCTGCATTTC-TTTCGTTGGGGCACCATCACCAGAGCATCATTG
819870 GAGAACCTGACCGACGGCATTAGGGTTTCGACGATCAGGGGGGCCGGGGGGGTGTGCGCACATAT
65 GAGAACCTGACCGACGGCATTAGGGTTTCGACGATCAGGGGGGCCGGGGGGGTGTGCGCACATAT
819935 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAAAT
130 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAAAT
820000 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
195 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
820065 AATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCAAGTTTTTAGCTGAA-TTTT
260 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * ** * * * * * *
820129 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTTCCAAGTTTAGGGCCAAAACTCCTTTCGAA
325 TTGTGTATACCAAAAAAAATAGGAGGATCATGTCTACCAGGTTTTGGGCCAAAAATCCTTCCGAA
* * * * ** *
820194 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTATGAAAAATGGTGAAAAATAGAAAACGAGTCGT
390 AAAATTTTAAAAAATCTTGAACCGTAAAATGTTTCAAAAATTATGAAAAATAGAAAATGAGTCGT
*
820259 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATG
455 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*** * *
820324 GCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT-
520 GCATTGGCAGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGG-TA
** * *
820388 TGC-GCATCCCGTCTCTCTGGCC-----A--G--CGTACTCCCGCTTGCCCGCTCGTTTCATCGG
584 T-CTGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCATCGG
* * * * * * ** ** * * * *
820443 TTAGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGATCGGATTGACGGTTACTACAGCA
648 TTGGCTTGGGCATACGAAGTTCATTCCCAGTCTAAGATCACACCAAACCGAGGGTTGCGACAACA
* * ** * * ** **
820508 GGATAGACAGCACATAGTGGGGGACCCGATTGATCCCCGATTTATGCATCCCGCCCCTCTGGCCG
713 GGATTGCCAGCACGCAGAGGGGGACCCGATCGATCCCCGATTTACACATCCCATCCCTCTGGCCG
** * * * * * *
820573 GTTGAGTGCCCGCACGCTCGTTTT-ATGGGTTGACTTAGGCATACAGAGTTCACTCCCAGTCTAA
778 ACTGAGCGCTCGCACGCTC-TTTTCATGGGTTTACTTAAGCATACGGAGTTCATTCCCAGTCTAA
820637 G
842 G
820638 CATATGGAGT
Statistics
Matches: 2472, Mismatches: 108, Indels: 22
0.95 0.04 0.01
Matches are distributed among these distances:
867 185 0.07
868 4 0.00
869 1 0.00
871 1 0.00
876 1466 0.59
877 709 0.29
878 74 0.03
879 32 0.01
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (876 bp):
TGGGCTCGGGCATGTGCTGGTGCTGCATTTCTTTCGTTGGGGCACCATCACCAGAGCATCATTGG
AGAACCTGACCGACGGCATTAGGGTTTCGACGATCAGGGGGGCCGGGGGGGTGTGCGCACATATG
TGTGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAAATC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
TGTGTATACCAAAAAAAATAGGAGGATCATGTCTACCAGGTTTTGGGCCAAAAATCCTTCCGAAA
AAATTTTAAAAAATCTTGAACCGTAAAATGTTTCAAAAATTATGAAAAATAGAAAATGAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCAGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGTATC
TGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCATCGGTTG
GCTTGGGCATACGAAGTTCATTCCCAGTCTAAGATCACACCAAACCGAGGGTTGCGACAACAGGA
TTGCCAGCACGCAGAGGGGGACCCGATCGATCCCCGATTTACACATCCCATCCCTCTGGCCGACT
GAGCGCTCGCACGCTCTTTTCATGGGTTTACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
GGGCTGGACCGAGTGTTACGGCAGCACATGC
Found at i:821440 original size:26 final size:26
Alignment explanation
Indices: 821404--821456 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
821394 GTTGACTTAG
821404 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
821430 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
821456 G
1 G
821457 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:822320 original size:26 final size:26
Alignment explanation
Indices: 822280--822332 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
822270 GTTGACTTAG
822280 GCATAAGGAGCTCATTCCCAGTCTAA
1 GCATAAGGAGCTCATTCCCAGTCTAA
* *
822306 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGCTCATTCCCAGTCTAA
822332 G
1 G
822333 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGCTCATTCCCAGTCTAA
Found at i:822457 original size:876 final size:874
Alignment explanation
Indices: 820696--823827 Score: 4028
Period size: 876 Copynumber: 3.5 Consensus size: 874
820686 AGCAACATAT
* *
820696 GCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCCAGTACTTGGCCCTTATATTGG-CCCCTA
1 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTA
* *
820760 TCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTT
66 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
820825 CTAGTAGCCATTAAATTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
131 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * **
820890 TTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAAAACAAGGATGACGTCTAAAAAGT
196 TTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAAAACAAGGATCACGTCTACCAAGT
* * *
820955 TTGGGACTAAAACTCCTTCCGAAAGAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATC
261 TTGGGACCAAAACTCCTTCCGAAA-AAATTTAAAAAATCCCGAACCATAAAAAGTTTTAAAAATC
*
821020 ATGAAAAATAAAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
325 ATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* ** * *
821085 TGAATTTAGAATTCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCTACCT
390 TGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
821150 ACTAACCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGTCCTTCC-
455 ACCACCCTATCGATCCACGGCTTGCGCGTCCCGTCTCT-TGGTCGACGTAGTGCCCGTCC-ACCT
* * * *
821214 GCCCGTCCGCTCGTTTCGTCGATTGGCTTAGGCATATGGAGTTCATTCACAGTCTAAGATCAGAT
518 GCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTC-CAGTCTAAGATCAGAA
* * * * * * *
821279 CAGACCGAGGGTTGGGGTAGCAGGATCAACAACACGCAGAGGGGGACCCGGCCGATCCCCGACTT
582 CTGACCGAGGGTT-GAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
* * *
821344 GCCCATCCCGCCCCTCCGGCCGGCTGAGTGCCGGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
646 GCGCATCCCGCCCCTCTGGCCGACTGAGTGCCGGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * *
821409 CA-GAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAG
711 -AGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAG
* * *** *
821473 GGTTACGGCAGTACATGCTGGGCTCGAGCATGTGCT-GGGTCACATTTTTCTTCACCGGAGAACT
775 GGTTACGGTAGCACATGCTGGGCTCGAGCATGTGCTGGGGTCACATTTTTCTTCGTTGGAGAACA
* * *
821537 TGACCGGCGGCAATGGGGATCCGACGATCGGGGGG
840 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* *
821572 GCCCGGGGGGTGTGCACACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCT
1 G-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCT
821637 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
65 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * *
821702 TCCAGTAGCCATTAAACTGTCTGAAATGGGGGCATTTTTTTCAAATGGTCACAAAATCTTGTACA
130 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
821767 CTTCGAGTTTTTAGCTAAATTTTTTTGTACATGCCAAAAAAAAAACAAGGATCACGTCTACCAAG
195 CTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAAAACAAGGATCACGTCTACCAAG
* * * * *
821832 TTTGGGACCAAAACCCCTTCCGAAAAAATTTAAAAAATCTCGAATCATAAATA-TTTTGAAAATC
260 TTTGGGACCAAAACTCCTTCCGAAAAAATTTAAAAAATCCCGAACCATAAAAAGTTTTAAAAATC
*
821896 ATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG-TTAAGGGACCATTGCA
325 ATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
821960 TGAATTTACAAGCCATAAAAATGGCATTGGCACATGGAATATATGAAGATGTGCCTAAACCCACC
390 TGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAA-ATATGAAGATGTGCCTAAACCCACC
* * *
822025 TACCACCCTTTCGATACACGGCTCGCGCGTCCCGTCTCTTTGGTCGACGTAGTGCCCGTCCACCT
454 TACCACCCTATCGATCCACGGCTTGCGCGTCCCGTCTC-TTGGTCGACGTAGTGCCCGTCCACCT
* *
822090 ACCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATC-GAA
518 GCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCC-AGTCTAAGATCAGAA
* * ** * *
822154 CTGGACAGTGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCAATCCTCGGCT
582 CT-GACCGAGGGTTG-AGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
* *
822219 TGCGCATCCCACCCCTCTGGCCGACTGAGTGCCGGTACGCTCGTTTCGTGGGTTGACTTAGGCAT
645 TGCGCATCCCGCCCCTCTGGCCGACTGAGTGCCGGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* **
822284 AAGGAGCTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAG
710 AAGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAG
* * *
822349 GGTTGCGGTAGCACATACTGGGCTCGAGCATGTGCTGGGGTCGCATTTTTCTTCGTTGGAGAACA
775 GGTTACGGTAGCACATGCTGGGCTCGAGCATGTGCTGGGGTCACATTTTTCTTCGTTGGAGAACA
* *
822414 TGACCGACGGCATTGGGGTTTCGACGATTGGGGGG
840 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
* * * ** *
822449 GTCGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCACCCCCAA
1 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTA
*
822514 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTG
66 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
822579 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACAC
131 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
822644 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAATACAAGGATCACGTCTTCCAAG
196 TTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAA-AAAAAAAACAAGGATCACGTCTACCAAG
* * ** * * *
822709 TTTAGGG-CCAAAACTCCATCCAAAAAAATTTTAAAAAATCTGGAACTACAAAAAGTTTCAAAAA
260 TTT-GGGACCAAAACTCCTTCCGAAAAAA-TTTAAAAAATCCCGAACCATAAAAAGTTTTAAAAA
* * *
822773 TCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
323 TCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * *
822838 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAAAAGTGCCTAATCCCAC
388 TATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCAC
* * * ** * *
822903 CATACCCGCCCTATCG-TCCACGGACCTTAC-CG-CCCATC-C-T-GTCTTTC-T-G-GCCGGTG
453 C-TA-CCACCCTATCGATCCACGG--CTTGCGCGTCCCGTCTCTTGGTC-GACGTAGTGCCCGTC
* * * *
822959 TA-GTGCCCGCCCGCT-AGTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCCAAGTCTAAGA
513 CACCTGCCCGCCCGCTCA-TTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCC-AGTCTAAGA
* * * * * * * *
823022 TCGGACCTGACCGAGGGTT-ATGACGGTAGGATCGACAGGATGCAGTGGGGGACCC-AGCTGATC
576 TCAGAACTGACCGAGGGTTGA-G-CAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-CCGATC
* * * * *
823085 CCCGGCTTGCGCATCCTGCCCCTCTAGCC-AGCTGAGCGCCCGCACGCTCGTTTTGT-GGTTGAG
638 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGA-CTGAGTGCCGGCACGCTCGTTTCGTGGGTTGA-
* *
823148 GTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
701 CTTAGGCATAAGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
* * * *
823213 CGGATCAAGGGTTACGATGGCACATGCTGGGCTC-AGGCATGTGCTGGTGCCACATTTTTCTTCA
766 CGGATCAAGGGTTACGGTAGCACATGCTGGGCTCGA-GCATGTGCTGGGGTCACATTTTTC-T--
* * * *
823277 TCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACTGGCGGCATTGGAGTTCCGGCGATCG
827 TC---G-----T--T-GGAG-AACAT----G-ACC-GA----CGGCATTGGGGTTCCGACGATCG
*
823342 GGGGA
870 GGGGG
* * *
823347 GCCAGGGTGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTGGGCCCTTATATTGGCCCCC
1 GCC-GGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCC
* *
823412 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGC
64 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * * *
823477 TGCCAGTGGCCATTAAAGTGTTTGAAATGGGGACACTTTATACAAATGGTCACAAAATCTTGTAC
129 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * **
823542 ACTTCGAGTTTTTAGCTGAACTTTTTTGTGCATTACAAAAAAAAATACAAGGATCACGTCTACCA
194 ACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAAA-ACAAGGATCACGTCTACCA
* * * *
823607 AGTTTGGGAACAAAACTCCTTCCGAAAAAATGTTAAAAAATCCCGAACCGTAAAAAATTTTGAAA
258 AGTTTGGGACCAAAACTCCTTCCGAAAAAAT-TTAAAAAATCCCGAACCATAAAAAGTTTTAAAA
** * * *
823672 ATTGTGAAAAATAGAAAATGAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTCAA-GGACCAT
322 ATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGGACCAT
* * * *
823736 TGTATGAATTTACAAGCCATAAAAATGGGATTGCCACGTAGAAATATGAAGATGTTCCTAAACCC
386 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCC
*
823801 ACCTACCACCCTATCGATCCACAGCTT
451 ACCTACCACCCTATCGATCCACGGCTT
823828 ACGCATTTGA
Statistics
Matches: 1981, Mismatches: 215, Indels: 99
0.86 0.09 0.04
Matches are distributed among these distances:
871 1 0.00
872 11 0.01
873 250 0.13
874 11 0.01
875 58 0.03
876 606 0.31
877 180 0.09
878 236 0.12
879 78 0.04
880 65 0.03
881 11 0.01
882 3 0.00
884 1 0.00
886 1 0.00
887 4 0.00
888 3 0.00
892 1 0.00
893 3 0.00
894 2 0.00
897 3 0.00
898 35 0.02
899 21 0.01
900 395 0.20
901 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (874 bp):
GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTA
TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
TTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAAAACAAGGATCACGTCTACCAAGT
TTGGGACCAAAACTCCTTCCGAAAAAATTTAAAAAATCCCGAACCATAAAAAGTTTTAAAAATCA
TGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTGCGCGTCCCGTCTCTTGGTCGACGTAGTGCCCGTCCACCTGCC
CGCCCGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCAGTCTAAGATCAGAACTGA
CCGAGGGTTGAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
TCCCGCCCCTCTGGCCGACTGAGTGCCGGCACGCTCGTTTCGTGGGTTGACTTAGGCATAAGGAG
TTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTAC
GGTAGCACATGCTGGGCTCGAGCATGTGCTGGGGTCACATTTTTCTTCGTTGGAGAACATGACCG
ACGGCATTGGGGTTCCGACGATCGGGGGG
Found at i:823189 original size:26 final size:26
Alignment explanation
Indices: 823153--823205 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
823143 TTGAGGTTAG
*
823153 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
823179 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
823205 G
1 G
823206 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:824158 original size:377 final size:377
Alignment explanation
Indices: 823453--824198 Score: 1359
Period size: 377 Copynumber: 2.0 Consensus size: 377
823443 CCCTTAAAGA
823453 GCATTTGAGATTTTATAGGTTTGCTGCCAGTGGCCATTAAAGTGTTTGAAATGGGGACACTTTAT
1 GCATTTGAGATTTTATAGGTTTGCTGCCAGTGGCCATTAAAGTGTTTGAAATGGGGACACTTTAT
823518 ACAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTTTTTGTGCATTACAAAAA
66 ACAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTTTTTGTGCATTACAAAAA
823583 AAAATACAAGGATCACGTCTACCAAGTTTGGGAACAAAACTCCTTCCGAAAAAATGTTAAAAAAT
131 AAAATACAAGGATCACGTCTACCAAGTTTGGGAACAAAACTCCTTCCGAAAAAATGTTAAAAAAT
* *
823648 CCCGAACCGTAAAAAATTTTGAAAATTGTGAAAAATAGAAAATGAGTCGTCTTGCAATGAAACTT
196 CCCGAACCGTAAAAAATTTTGAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCAATGAAACTT
* * *
823713 CACGTGAAGGCTTCAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGGATTGCCACGTAGA
261 CACGTGAAGGCTTCAAGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGCCACGCAGA
* *
823778 AATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACAGCTTAC
326 AATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACAGCTTAC
823830 GCATTTGAGATTTTATAGGTTTGCTGCCAGTGGCCATTAAAGTGTTTGAAATGGGGACACTTTAT
1 GCATTTGAGATTTTATAGGTTTGCTGCCAGTGGCCATTAAAGTGTTTGAAATGGGGACACTTTAT
823895 ACAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTTTTTGTGCATTACAAAAA
66 ACAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTTTTTGTGCATTACAAAAA
*
823960 AAAATACAAGGATCACGTCTACCAAGTTTGGGAACAAAACTCCTTCCGAAAAAATTTTAAAAAAT
131 AAAATACAAGGATCACGTCTACCAAGTTTGGGAACAAAACTCCTTCCGAAAAAATGTTAAAAAAT
* * *
824025 CCCGAACCGTAAAAAGTTTTGCAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTT
196 CCCGAACCGTAAAAAATTTTGAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCAATGAAACTT
* *
824090 CACGTGAAGGCTT-AAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAG
261 CACGTGAAGGCTTCAA-GGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGCCACGCAG
824154 AAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCA
325 AAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCA
824199 TTGCTTGCGC
Statistics
Matches: 355, Mismatches: 13, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
376 2 0.01
377 353 0.99
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (377 bp):
GCATTTGAGATTTTATAGGTTTGCTGCCAGTGGCCATTAAAGTGTTTGAAATGGGGACACTTTAT
ACAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTTTTTGTGCATTACAAAAA
AAAATACAAGGATCACGTCTACCAAGTTTGGGAACAAAACTCCTTCCGAAAAAATGTTAAAAAAT
CCCGAACCGTAAAAAATTTTGAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCAATGAAACTT
CACGTGAAGGCTTCAAGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGCCACGCAGA
AATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACAGCTTAC
Found at i:824463 original size:26 final size:26
Alignment explanation
Indices: 824427--824479 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
824417 GTTGACTTAG
*
824427 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
824453 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
824479 G
1 G
824480 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:825338 original size:26 final size:26
Alignment explanation
Indices: 825302--825354 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
825292 GTTGACCTAG
825302 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
825328 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
825354 G
1 G
825355 ATCGAACTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:826250 original size:26 final size:26
Alignment explanation
Indices: 826197--826250 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
826187 TGGGTTGACT
*
826197 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCACTC
**
826223 TAGGCATACGGAGTTCATTGTCACTC
1 TAGGCATACGGAGTTCATTCCCACTC
826249 TA
1 TA
826251 AGATCGGACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCACTC
Found at i:826336 original size:898 final size:890
Alignment explanation
Indices: 823830--829324 Score: 7112
Period size: 898 Copynumber: 6.2 Consensus size: 890
823820 CACAGCTTAC
* * * *
823830 GCATTTGAGATTTTATAGGTTTGCTGCCAGTGGCCATTAAAGTGTTTGAAATGGGGACACTTTAT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * * * *
823895 ACAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTTTTTGTGCATTACAAAAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCA-TGCCAACA
**
823960 AAAATACAAGGATCACGTCTACCAAGTTTGGGAACAAAACTCCTTCCGAAAAAATTTTAAAAAAT
130 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA-
* *** *
824025 CCCGAACCGTAAAAAGTTTTGCAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTT
194 CCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
* **
824090 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAGA
259 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
* ** *
824155 AATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCATTGCTTGCGCGTCCCGTCTCT
324 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * **
824220 CTGGCCGACGTAGTGCCCGCCCG-CCCGCTTGTGTCGTCAGTTGGCTTAGGCATAAAGAGTTCAT
389 CTGGCCGACGTAGTGCCCGCCCGCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * * * ** * *
824284 TCCCAGTCTAAGATCAAACCAGACCCAGGGTTACGGTAGTAGGATCGGTAGCATGTAGAGAGGGA
454 TCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGA
* * * * * *
824349 CCCAATCGATCTCC-GGCTTGCACATTCCGCCCCTCTGG-CGGATGAGCACCCGCACGCTCGTTT
519 CCCGACCGATC-CCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTT
* *
824412 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCT
583 CGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* ** * * *
824477 AAGATCGGACTAGACCGAGGGTTGCGGTAGCACATGCTAGGCTCGAGCATGTGTTGGAGCCGCAT
648 AAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGTCGCAT
* * * * * *
824542 TTTTCTTCGTCAGGGCTACCAT---C--GC--CGGAG---C--A--TCGTC--T---GTTTCGAC
713 TTTTCTTTGTCGGGGC-ACCATCACCGGGCATCGGAGAACCTGACCGCGGCATTGGGGTTCCGGC
*
824588 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATAG
777 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA-
824653 TT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGA
841 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
824701 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * * *
824766 TCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCTTGCCAATAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAA
* *
824831 AAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCTGAAAAAATTTTAAAAAATC
131 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA-C
* * *
824896 CCGAACCACAAAAAGTTTAAAAAATCGTGAAAAATAGAAAATTAGTCGTCTTGCCATGAAACTTC
195 CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTC
824961 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
260 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
* * * *
825026 ATATGAAGTTGTGCGTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCACTC
325 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * *
825091 TGGCC-AGCGCAGTGCCCGCCCACCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTT
390 TGGCCGA-CGTAGTGCCCG-CC-CGC-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * * * *
825155 CATTCCTAATCTAAGATCAGACTGAACCGAGGGTTGCGGCAGCAGGATCGATAGCACATAGAGGA
451 CATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGG
* * * *
825220 GGACCCGATCGAT-CCTCGACTTACGCATCCCGCCCTTCTGGTCGGCTGAGCACCCGCACGCTCG
516 GGACCCGACCGATCCCT-GACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCG
* *
825284 TTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
580 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * *
825349 TCTAAGATCGAACTAGACTGAGGGTTGTGACAGCACATGCTGGGCTAGGGCATGTGTTGGTGTCG
645 TCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGTCG
* *
825414 CATTTTTCTTTGTCGGGGCACCATCACCGGAGCATCGTCAAAGAATCTGACCAGCGGCATTGGGG
710 CATTTTTCTTTGTCGGGGCACCATCACCGG-GCATCG---GAGAACCTGACC-GCGGCATTGGGG
*
825479 TTCCGGCGATCGGGGGGACCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
770 TTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* *
825544 CCTTATATTGGCCCCTTATCCCTCATCAAACCTCGCGAACTCACACCCCCTTAAAGA
834 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
825601 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAACTGTCTGGAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
825666 TCAAATGGTCAC-AAATCTTGTACACTTCGAGTTTTTAGTTAAATTTTTTTGCGCATGCGAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAA
*
825730 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAACC
131 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAACC
* * * * * *
825795 TGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAAAAAACGAGTCGTGTTGCCATGAAACTTCA
196 CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
** *
825860 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCCGAAA
261 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
* * ** * * *
825925 TATGAAGATGTGCTTGAAGACACCTACCACCCTATCGATCCACGTCTTGCGCATCCCGTTTGTCT
326 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* *
825990 GGCCGACGTAGTGCCCGCCCGCTCGTCCGCTCGTTTCGTCGGTTGGCTCAAGCATACGGAGTTCA
391 GGCCGACGTAGTGCCCGCCCGC-C--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* ** * * * * *
826055 TTCCTAGTCTAAGATTAGACCGGATTGAGGGTT-CTGACAGCTGGATTGGCAGCATGTAGAGGGG
453 TTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGC-GGCAGCAGGATCGACAGCACGTAGAGGGG
* * *
826119 GACCCGACCAATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACACTCGTT
517 GACCCGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTT
* * ** *
826184 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGGCATACGGAGTTCATTGTCACTC
582 TCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* ** * *
826249 TAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTTTGCTCGGGCATGTGCTGGTGTGGCA
647 TAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGTCGCA
* ** * *
826314 TTTTTCCTCATCGGGACACCAT---C--G--TCGGAGAACCTGACCTGCGGCATTGGGGTTTCGG
712 TTTTTCTTTGTCGGGGCACCATCACCGGGCATCGGAGAACCTGACC-GCGGCATTGGGGTTCCGG
**
826372 CGATCGGGGGGGCCGGGGGGAAGGTGTGCGCACATGATGCACGATGGGTGCTGGTACTTGGCCCT
776 CGATCGGGGGGGCC--GGGG--GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
826437 TATATTGGCCCCTTATCCCTCATCAAACCTCGACAACTCACACCCCCTTAAAGA
837 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
826491 GCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * * *
826556 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTGGTGCATGCTAGAAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCA-ACA
* * *
826621 AAAAAACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAACT
130 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA-A
* *
826686 CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTT
194 CCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
* * * **
826751 CACGTGAAGGCTTAAGGGACCATTGTCTGAATTTACAAGCCAGAAAAATGGAATTGG-ATGCAGA
259 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
* * *
826815 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGCATCCTGTCTCT
324 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * ** *
826880 CCGGCCGGCGTAGT----GCCCG-CCCGCTAATTTCGTCGGTTGGCTTAGGCAAACGGAGTTCAT
389 CTGGCCGACGTAGTGCCCGCCCGCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * * * *
826940 TCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGAAGGATCGGCAACATGCAGAGGGGGA
454 TCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGA
* * *
827005 CCCGATCGAT-CCTCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTT
519 CCCGACCGATCCCT-GACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTT
* *
827069 CGTGAGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCT
583 CGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* ** * * * *
827134 AAGATCGGATCAGACCGAGGGTTAAGACAGCACATGCTAGGCTCGAGCATTTGTTGGTGCCGTAT
648 AAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGTCGCAT
* * * *
827199 TTTTCTTCGTCGGGGCACCATCGCCGGGGCAACGCCGGAGAACCTGACCGGCGGCATTAGGGTTC
713 TTTTCTTTGTCGGGGCACCATCACC-GGGC-A--TCGGAGAACCTGACC-GCGGCATTGGGGTTC
* * * *
827264 CGACGATCGGGGGGGTCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTT
773 CGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
827329 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
838 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * * * * *
827382 GCATTCGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAATGTCTAAAATGAGGACAGTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * * **
827447 TCAAATGGTCACAAAATCATGTACACCTT-GAGTTTTTAGCTGAATTTTTTTATGTACACCAACA
66 TCAAATGGTCACAAAATCTTGTACA-CTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACA
* * * ** * *
827511 AAAATGCAAGGATCATGTCTACCAAGTTTAGCACCAAAACTCCTTTCGAAAAATTTTTAAAAAAT
130 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA-
* ** *
827576 CCCAAACCGCAAAAAGTTTTGAAAATCGAGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
194 CCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
* * *
827641 CACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCTATAAAAATGGCATTGGCACACAAA
259 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
* *
827706 AATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCAG-ATCCCGTCTT
324 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC-GCATCCCGTCTC
* * * *
827770 TCTGGCC-AGCGTAGTGCCCGCCCG-CCCGCTCGTTTCGTCGGTTAGCCTAGGGATACGCAGTTC
388 TCTGGCCGA-CGTAGTGCCCGCCCGCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * *
827833 ATTGCCAGTCTAAGATTGGATCGGACCGAGGGTTGTGGCAGCAGGATTGACAGCACGTAGAGGGG
452 ATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGG
* * * * * * * * *
827898 GACTCGACGGATCCCCGACTTACACATCCTG-CCCTCTGGCCGGTTGAGCACTCGCTCGCTCGTT
517 GACCCGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTT
* * * *
827962 TAGTGGGTTGACTTAGGCATACAAAGTT-ATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTC
582 TCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * * *
828026 TAAGATCAGACCAGACCGAGGGTTGTGGCAACACATGCTGGGCTCGGGCATGTGTTGGTGTCGCA
647 TAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGTCGCA
* * * * *
828091 TTTTTCTTTGT--TGG-AGCATCA----G---CGGTGAACTTGACCGACGGCATTGGGGTTCTGG
712 TTTTTCTTTGTCGGGGCACCATCACCGGGCATCGGAGAACCTGACCG-CGGCATTGGGGTTCCGG
*
828146 CGATCGGGAGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
776 CGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
828211 ATTGGCCCCCTATCCCTCATCAAACCTCGTGAACTCACACCCCCCTTAAAAA
840 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCCTTAAAGA
* * *
828263 GCATTTGAGATTTTACAGGTTCGTTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * *
828328 TCAAATGGTCATAAAATGTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGTGCGTGCCAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAA
* * * *
828393 AAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAACTCGTTCTGAAAAAATTTTAAAAATCC
131 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAACC
* * * * *
828458 CAAACCCCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAATCGTCTTGCTATGAAACTTCA
196 CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
* *
828523 TGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACATTGGCACACAGAAA
261 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
* *
828588 TATGAAGATGTGCCTAAACCCACCTACCACCCTTTCGATCCACGACTTGCGCATCCCGTCTCTCT
326 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
*
828653 GGCCGGCGTAGTGCCCGCCAGTCTGTCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
391 GGCCGACGTAGTGCCCGCC---C-G-C--CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * *
828718 TTCATTCCCAGCCTAAGATTAGATCGGATCGAGGGTTACAGCAGCAGGATCGACAACACGCAGAG
449 TTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAG
** * * * * *
828783 TTGGACCCGGCCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCACCCACACGCTC
514 GGGGACCCGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTC
* * * *
828848 GTTTCATGGGTTGACTTAGGCAAACGAAGTTCATTCCCAGTCTAAGCATGCAGAGTTCATTCCCA
579 GTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * * * *
828913 GTCTAAAATCAGACTAGACCGAGGGTTACGATAGCGCATGCTAGGCTCGGGCATGTGTTGGTGCC
644 GTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGTC
* ***
828978 GCATTTTTCATTGTCGGGGCACCATCGTAGGAGCATCGTTAGAGAACCTGACCGACGGCATTGGG
709 GCATTTTTCTTTGTCGGGGCACCATCACCGG-GCATCG---GAGAACCTGACCG-CGGCATTGGG
* * *
829043 GTTCCGACGATC-GGGGGGCCGGAGGGTGTGCGCACATGATGTGCGGTGGGTGCTGGTACTTGGC
769 GTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
829107 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
834 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
829164 GCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
829229 TCAAATGGTCACAAAATCTTGTACACTTGGAGCTTTTAGCTAAATTTTTTTGTGCATGCCAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAA
* *
829294 AAATATAAGCATCACGTCTACCAAGTTTGGG
131 AAATACAAGGATCACGTCTACCAAGTTTGGG
829325 ACCATTGTAT
Statistics
Matches: 4030, Mismatches: 495, Indels: 168
0.86 0.11 0.04
Matches are distributed among these distances:
869 1 0.00
870 260 0.06
871 114 0.03
872 3 0.00
874 118 0.03
875 156 0.04
877 1 0.00
878 1 0.00
879 39 0.01
880 286 0.07
881 171 0.04
882 2 0.00
883 4 0.00
884 273 0.07
885 4 0.00
886 1 0.00
887 41 0.01
888 121 0.03
889 52 0.01
890 443 0.11
891 317 0.08
892 142 0.04
893 221 0.05
894 54 0.01
895 153 0.04
896 5 0.00
897 3 0.00
898 481 0.12
899 191 0.05
900 85 0.02
901 162 0.04
902 86 0.02
903 7 0.00
904 32 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAACC
CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGACGTAGTGCCCGCCCGCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACC
CGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGT
GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
ATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGTTGGTGTCGCATTTT
TCTTTGTCGGGGCACCATCACCGGGCATCGGAGAACCTGACCGCGGCATTGGGGTTCCGGCGATC
GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
Found at i:827121 original size:26 final size:26
Alignment explanation
Indices: 827084--827136 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
827074 GTTGACTTAG
*
827084 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
827110 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
827136 G
1 G
827137 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:828014 original size:25 final size:26
Alignment explanation
Indices: 827978--828029 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
827968 GTTGACTTAG
*
827978 GCATACAAAGTT-ATTCCTAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
*
828003 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
828029 G
1 G
828030 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:829700 original size:26 final size:26
Alignment explanation
Indices: 829649--829701 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
829639 GTTGATTTAG
**
829649 GCATACAGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
*
829675 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
829701 G
1 G
829702 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:830359 original size:777 final size:785
Alignment explanation
Indices: 829322--831384 Score: 2617
Period size: 777 Copynumber: 2.6 Consensus size: 785
829312 TACCAAGTTT
* *
829322 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTAC
1 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* * * * * *
829387 CTAAACCCACCTACCACCCTAAAGATCCCCGACTTGCGGATCCCATCTCTCTTGCTGACGTAGTG
66 CTAAACCCACCTACCACCCTATAGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTG
* * * * *
829452 CCCGC-CTGCTCGCTCGCTCATTTCGTTGGTTGGCTTACGCATACGGAGTTCATTTCCAATCTAA
131 CCCGCTC-GCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAA
** * * * * * *
829516 GATTGGA-TCGGACCGAGGGTTGCGGCAGCAGGATTGGCAACATGCAGAGGGGGACCCGATCGAT
195 GATCAGACT-GGA-TGAAGGTTGTGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGACCGAT
* * * * * *
829580 CCCTAGCTTGCACACCCCGCCCGTCTGGCCGGTTGAGCACCCGCACGCTCATTTCATGGGTTGAT
258 CCCTGGCTTGCGCATCCCGCCCGTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGAC
* * *
829645 TTAGGCATACAGAGTTCATTCCCATTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCGAACC
323 TTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* *
829710 AGACCGAGGGTTGTGGCATCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTC
388 AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTC
829775 GGGGCACCATCGTCGGAGAACAAGACCGGCGGCATTAGGGTTCC-AGCGATC-ACGGGG-G-CC-
453 GGGGCACCATCGTCGGAGAACAAGACCGGCGGCATTAGGGTTCCGA-CGATCGACGGGGAGCCCA
* * *
829835 A-A-A-G-G-G-GGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCCAA
517 AGACATGAGTGAGGTTTCCTACCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
829894 TGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTGAATTTTTTTGTGCATGGCAACAAAAATA
582 TGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATA
*
829959 CAACGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCAAAAAAATTTTGAAAAAATCCCAA
647 CAACGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT-AAAAAATCCCAA
* * * *
830024 ACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGACGTCTTGCCATGAAACTTCACGT
711 ACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGACATCTTGCCAAGAAACTTCACGT
830089 GAAGGCTTAA
776 GAAGGCTTAA
* *
830099 GGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGC
1 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* * **
830164 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCTGGTGTAGTG
66 CTAAACCCACCTACCACCCTATAGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTG
* * * *
830229 CTCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAG
131 CCCGCTCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAG
* *
830294 ATCAGACTGGATAGAAGGTTGTGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGGCCGATCC
196 ATCAGACTGGAT-GAAGGTTGTGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGACCGATCC
* * * *
830359 CCGGCTTGGGCATCCCGCCCGTCTGGCCGACTGAACACCCGCACGCTCGTTTCATGGGTTGACTT
260 CTGGCTTGCGCATCCCGCCCGTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTT
* * * * * *
830424 AGGCATGCAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTTCCAGTGTAAGATTGGACCGG
325 AGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* * *
830489 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTATTGGTGCCGCATTTTTCTTTGTTGG
390 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGG
* * * * **
830554 GGCACCATCGCCGAAGCATCGTTGGAGAACCAGATCGGCGGCATTGGGGTTTCGACGATCGGGGG
455 GGCACCAT---C---G--TC---GGAGAACAAGACCGGCGGCATTAGGGTTCCGACGATCGACGG
*
830619 GGTCAGCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTCCTGCCAGTAGCAATTAAAGTGTCTG
509 GG--AG-CCC---AAGA-CA--TGAG----TG-AGGTTTCCTACCAGTAGCAATTAAAGTGTCTG
*
830684 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTT
560 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTAAATTTT
* * * **
830749 TTTGTGCATGCCACCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCTGA
625 TTTGTGCATGCCAACAAAAATACAACGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
* * * *
830814 AAAGATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGATAACGAGTCA
690 AAAAATTTTAAAAAATCCCAAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGACA
*
830879 TCTTGCCAAGATACTTCACGTGAAGGCTTAA
755 TCTTGCCAAGAAACTTCACGTGAAGGCTTAA
* *
830910 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATTTGAAGATGTGC
1 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* * *
830975 CTAAACCCACCTACCACCCTATGGATCCACGGCTTGCCCATCCCGTCTCTCTGGCCGACGTAGTG
66 CTAAACCCACCTACCACCCTATAGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTG
* * *
831040 CCCGCCCGTCCGCTCGCCCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTACTC
131 CCCG--C-T-CGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATC
* * * *
831105 TAAGATCAGACCGGACTG-AGAGTTGTGGCACCAGGATCGGCAGCACGTAGAGGGGGACCCGACC
192 TAAGATCAGACTGGA-TGAAG-GTTGTGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGACC
* * * * * *
831169 GGT-CCTCGGCCTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGCT
255 GATCCCT-GGCTTGCGCATCCCGCCCGTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGT
* * * * *
831233 CGACTGAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAATCCTAGTCTAAGATCG
319 TGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * ** * * *
831298 GACCAGACCGAGGGTTGCGACAGAACATGCTGGGCTCAAGCATGTGTTGGTGTCACTTTTTTCTT
384 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTT
* * *
831363 CGCCAGGGCACCATCGCCGGAG
449 CGTCGGGGCACCATCGTCGGAG
831385 CATCGTCGGA
Statistics
Matches: 1099, Mismatches: 141, Indels: 65
0.84 0.11 0.05
Matches are distributed among these distances:
777 401 0.36
778 2 0.00
780 1 0.00
783 1 0.00
785 2 0.00
788 31 0.03
789 5 0.00
792 1 0.00
794 2 0.00
798 1 0.00
799 1 0.00
801 1 0.00
804 5 0.00
805 1 0.00
807 1 0.00
809 1 0.00
810 1 0.00
811 202 0.18
812 157 0.14
813 1 0.00
814 5 0.00
815 275 0.25
816 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (785 bp):
GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
CTAAACCCACCTACCACCCTATAGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTG
CCCGCTCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAG
ATCAGACTGGATGAAGGTTGTGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGACCGATCCC
TGGCTTGCGCATCCCGCCCGTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTA
GGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGG
GCACCATCGTCGGAGAACAAGACCGGCGGCATTAGGGTTCCGACGATCGACGGGGAGCCCAAGAC
ATGAGTGAGGTTTCCTACCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
CACAAAATCTTGTACACTTCGAGCTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAC
GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGA
AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGACATCTTGCCAAGAAACTTCACGTGAAGG
CTTAA
Found at i:831277 original size:26 final size:26
Alignment explanation
Indices: 831241--831293 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
831231 CTCGACTGAG
*
831241 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
*
831267 GCATACGGAGTTCAATCCTAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
831293 G
1 G
831294 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:831416 original size:815 final size:812
Alignment explanation
Indices: 829841--831435 Score: 2352
Period size: 815 Copynumber: 2.0 Consensus size: 812
829831 GGCCAAAGGG
* * *
829841 GGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCCAATGGTCACAAAAT
1 GGTTTCCTACCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
829906 CTTGTACACTTCGAGCTTTTAGCTGAATTTTTTTGTGCATGGCAACAAAAATACAACGATCACGT
66 CTTGTACACTTCGAGCTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAACGATCACGT
* * *
829971 CTACCAAGTTTGGGGCTAAAACTCCTTCCAAAAAAATTTTGAAAAAATCCCAAACTGCAAAAAGT
131 CTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTGAAAAAATCCCAAACCGAAAAAAGT
* *
830036 TTCAAAAATCATGAAAAATAGAAAACGAGACGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
196 TTCAAAAATCATGAAAAATAGAAAACGAGACATCTTGCCAAGAAACTTCACGTGAAGGCTTAAGG
*
830101 GACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCT
261 GACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCT
** * ** *
830166 AAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCTGGTGTAGTGCT
326 AAACCCACCTACCACCCTATCGATCCACGGCTTGCCCATCCCGTCTCTCTGGCCGACGTAGTGCC
*
830231 CGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
391 CGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCACTCTAAGAT
* * * * *
830296 CAGACTGGATAGAAGGTTGTGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGGCCGATCCCC
456 CAGACCGGATAGAAGGTTGTGGCACCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC
* * * * * *
830361 GGCTTGGGCATCCCGCCCGTCTGGCCGACTGAACACCCGCACGCTCGTTTCATGGGTTGACTTAG
521 GGCCTGCGCATCCCGCCCCTCTGGCCGACTGAACACCCGCACGCTCGTTTCATGGCTCGACTGAG
* * * * * *
830426 GCATGCAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTTCCAGTGTAAGATTGGACCGGAC
586 GCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATATCCAGTCTAAGATCGGACCAGAC
* * ** * * ***
830491 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTATTGGTGCCGCATTTTTCTTTGTTGGGG
651 CGAGGGTTGCGACAGAACATGCTGGGCTCAAGCATGTATTGGTGCCACATTTTTCTTCGCCAGGG
* * * * *
830556 CACCATCGCCGAAGCATCGTTGGAGAACCAGATCGGCGGCATTGGGGTTTCGACGATCGGGGGGG
716 CACCATCGCCGAAGCATCGTCGGAGAACCAGACCAGCGGCATTGGGGTTCCGACGATCAGGGGGG
830621 TCAGCCCCTTAAAGAGCATTTGAGATTTTGCA
781 TCAGCCCCTTAAAGAGCATTTGAGATTTTGCA
*
830653 GGTTTCCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
1 GGTTTCCTACCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
830718 CTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCACCAAAAATACAAGGATCACGT
66 CTTGTACACTTCGAGCTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAACGATCACGT
* ** * *
830783 CTACCAAGTTTGGGGCCAAAATTCCTTCTGAAAAGATTTT-AAAAAATCCCGAACCGAAAAAAGT
131 CTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTGAAAAAATCCCAAACCGAAAAAAGT
* * *
830847 TTCAAAAATCATGAAAAATAGATAACGAGTCATCTTGCCAAGATACTTCACGTGAAGGCTTAAGG
196 TTCAAAAATCATGAAAAATAGAAAACGAGACATCTTGCCAAGAAACTTCACGTGAAGGCTTAAGG
* * *
830912 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATTTGAAGATGTGCCT
261 GACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCT
*
830977 AAACCCACCTACCACCCTATGGATCCACGGCTTGCCCATCCCGTCTCTCTGGCCGACGTAGTGCC
326 AAACCCACCTACCACCCTATCGATCCACGGCTTGCCCATCCCGTCTCTCTGGCCGACGTAGTGCC
* * * *
831042 CGCCCGTCCGCTCGCCCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTACTCTA
391 CG--C-T-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCACTCTA
*
831107 AGATCAGACCGGACT-G-AGAGTTGTGGCACCAGGATCGGCAGCACGTAGAGGGGGACCCGACCG
452 AGATCAGACCGGA-TAGAAG-GTTGTGGCACCAGGATCGGCAGCACGCAGAGGGGGACCCGACCG
* * * * * *
831170 GTCCTCGGCCTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGCTCG
515 ATCCCCGGCCTGCGCATCCCGCCCCTCTGGCCGACTGAACACCCGCACGCTCGTTTCATGGCTCG
*
831235 ACTGAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA-ATCCTAGTCTAAGATCGG
580 ACTGAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATATCC-AGTCTAAGATCGG
* * *
831299 ACCAGACCGAGGGTTGCGACAGAACATGCTGGGCTCAAGCATGTGTTGGTGTCACTTTTTTCTTC
644 ACCAGACCGAGGGTTGCGACAGAACATGCTGGGCTCAAGCATGTATTGGTGCCACATTTTTCTTC
* * *
831364 GCCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCAGCGGCATTGGGGTTCCGGCGATC
709 GCCAGGGCACCATCGCCGAAGCATCGTCGGAGAACCAGACCAGCGGCATTGGGGTTCCGACGATC
831429 AGGGGGG
774 AGGGGGG
831436 CCGGGGGAGG
Statistics
Matches: 693, Mismatches: 83, Indels: 11
0.88 0.11 0.01
Matches are distributed among these distances:
811 202 0.29
812 156 0.23
813 1 0.00
814 6 0.01
815 327 0.47
816 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (812 bp):
GGTTTCCTACCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGAGCTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAACGATCACGT
CTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTGAAAAAATCCCAAACCGAAAAAAGT
TTCAAAAATCATGAAAAATAGAAAACGAGACATCTTGCCAAGAAACTTCACGTGAAGGCTTAAGG
GACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCT
AAACCCACCTACCACCCTATCGATCCACGGCTTGCCCATCCCGTCTCTCTGGCCGACGTAGTGCC
CGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCACTCTAAGAT
CAGACCGGATAGAAGGTTGTGGCACCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC
GGCCTGCGCATCCCGCCCCTCTGGCCGACTGAACACCCGCACGCTCGTTTCATGGCTCGACTGAG
GCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATATCCAGTCTAAGATCGGACCAGAC
CGAGGGTTGCGACAGAACATGCTGGGCTCAAGCATGTATTGGTGCCACATTTTTCTTCGCCAGGG
CACCATCGCCGAAGCATCGTCGGAGAACCAGACCAGCGGCATTGGGGTTCCGACGATCAGGGGGG
TCAGCCCCTTAAAGAGCATTTGAGATTTTGCA
Found at i:832190 original size:26 final size:26
Alignment explanation
Indices: 832147--832196 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
832137 GTTGACTTAG
*
832147 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
832173 GCATACGGA-TATCATTCCCAGTCT
1 GCATACGGAGT-TCATTCCCAGTCT
832197 CAGATCAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:833078 original size:26 final size:26
Alignment explanation
Indices: 833049--833101 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
833039 GTTGACTTAG
*
833049 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
833075 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
833101 G
1 G
833102 ATCTGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:833466 original size:913 final size:905
Alignment explanation
Indices: 830625--835265 Score: 6081
Period size: 906 Copynumber: 5.2 Consensus size: 905
830615 GGGGGGTCAG
* * *
830625 CCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTCCTGCCAGTAGCAATTAAAGTGTCTGAAATGG
1 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
830690 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTG
66 GGACACTTTTTTCAAAT-GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * *
830755 CATGCCACCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCTGAAAAGAT
130 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* *
830820 TTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGATAACGAGTCATCTTGC
195 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGC
* *
830885 CAAGATACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
260 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
830950 GGCATGCAGAAATTTGAAGATGTGCCTAAACCCACCTACCACCCTATGGATCCACGGCTTGCCCA
325 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
831015 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG---TCCGCTCGCCCTCTCGTTTCGTCGGTTGG
390 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCCGCTCGCCCGCTCATTTCGTCGATTGG
* * * * *
831077 CTTAGGCATACGGAGTTCATTCCTACTCTAAGATCAGACCGGACTGAGAGTTGTGGCACCAGGAT
455 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGACTGAGGGTTGTGGCAGCAGGAT
* * * *
831142 CGGCAGCACGTAGAGGGGGACCCGAC-CGGTCCTCGGCCTGCGCATCCTGCCCCTCTGGCCGGCT
519 CGGCAGCACGCAGAGGGGGACCCAACTCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCT
* * * * *
831206 GAGCACCCGCACGCTCGTTTCGTGGCTCGACTGAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
584 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCAT
* * *
831271 ACGGAGTTCAATCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGAACATGCTGGGCTCA
649 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTC-
* * * * * * **
831336 AGCATGTGTTGGTGTCACTTTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
713 GGCATGTGTTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCACCGGAGAACCT
* * *
831401 GACC-AGCGGCATTGGGGTTCCGGCGATC-AGGGGGGCCGGGGGAGGTGTGTGCACATGATGTGT
778 GACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGGCC-GGGG-GGTGTGTGCACATGATGTGC
* * * * **
831464 GATGGGGGCTGGTATTTGGCCCTTATATTGGCCCCCCATCCCTCGTCATTCCTCGAGAACTCACA
840 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
831529 C
905 C
* *
831530 CCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAG
1 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
831595 GGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTT-T
66 GGACACTTTTTTCAAAT-GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGT
* *
831659 GCATGCCAAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAA
129 GCATGCC-AACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
831724 ATTTTAAAAAATCACGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCATCTT
193 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
* * *
831789 GCCATGAAACTTCACGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGTA
258 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* ** * * *
831854 TAGGCACACAGAGATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATGGCTTGCG
323 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * *
831919 AATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCTG--C-CCGCCCGTCCGCTCGTTTCGTCGGTT
388 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCCGCTCGCCCGCTCATTTCGTCGATT
* *
831981 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGATTGAGGGTTGTGGCAGCAGG
453 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGACTGAGGGTTGTGGCAGCAGG
* * * *
832046 ATCGGCAGCACGCAGAGGGGGA--CAAGATCGATCCTCGGCTTGTGCATCCTGTCCCGT-TGGCT
517 ATCGGCAGCACGCAGAGGGGGACCCAA-CTCGATCCTCGGCTTGCGCATCCTG-CCCCTCTGGCC
* * * * *
832108 GACTGAGCGCCCGCACACTTGTTTCATAGGTTGACTTAGGCATACGGAGTTC-TTTCCCAGTCTA
580 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTT-CCAGTCTA
* * *
832172 AGCATACGGA-TATCATTCCCAGTCTCAGATCAGATCAGACCGAGGG-T-----------TGCTG
644 AGCATACGGAGT-TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTG
* * * ** ** *
832224 GGCTTAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCTTCATCGTCGGAGCATTGCCAGA
708 GGC-TCGGCATGTGTTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCACCGGA
* * * * * * *
832289 GAACCTGACCGGCGGCGTTAGGGTTCCGGCCAATC-TGGGGGGCCGGAGGGGTGTGCGCACATGA
772 GAACCTGACCGACGGCATTGGGGTTCC-GACGATCGGGGGGGGCCGG-GGGGTGTGTGCACATGA
* * *
832353 TGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACTTCGAGAAC
835 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
832418 TCACAC
900 TCACAC
*
832424 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTGTCTGAAATGG
1 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
832489 GGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCAAGCTTTTAGCTGAATTTTTTTGTG
66 GGACACTTTTTTCAAATG-TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
832554 CATGCCAACAAAAATACAAAGATCATGACTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAT
130 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * *
832619 TTTAAAAAATCCTGAACC-TCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
195 TTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTG
* * *
832683 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCACGAATTTACAAGCCATAAAAATGGGAT
259 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
832748 TGGCATGCAGAAATATGAAGATGTTCTTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
324 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
832813 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCTGCCTTGCTCGCCCGCTCATTTCGT
389 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CCT-CC--GCTCGCCCGCTCATTTCGT
*
832878 CGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTAGCA
448 CGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGACTGAGGGTTGTGGCA
*** * * *
832943 GCAGGATCAATAGCACACAGAGGGGGACCCAACT-GATCCACGGCTTGCGCATCCCGCCCCTCTG
512 GCAGGATCGGCAGCACGCAGAGGGGGACCCAACTCGATCCTCGGCTTGCGCATCCTGCCCCTCTG
* *
833007 GCCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTC
577 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTC
* *
833072 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCAGACCAAGGGTTGC-ACAGCACATGCT
642 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCT
* * *
833136 GGGCTCGGCCATGTGTTGGTGTCGTATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCACCGG
707 GGGCTCGG-CATGTGTTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCACCGG
* * **
833201 AGAACCTGACCGACGGCATTGGGGTTCCGATGATCAGGGGGGGGTCGGGGGGTGTGCACACATGA
771 AGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGGGCCGGGGGGTGTGTGCACATGA
* *
833266 TGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAAC
835 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
833331 TCACAC
900 TCACAC
* *
833337 CCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATGG
1 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
833402 GGACATTTTTTTCAAATCGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTGTTTTGTG
66 GGACACTTTTTTCAAAT-GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
833467 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
130 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
*
833532 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
195 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGC
*
833597 CATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
260 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
833662 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
325 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * *
833727 TCCCGTCTCTCTGGCCGGTGTAGTGCCCACCCGCCC-AC-C-CACCTGCTCGTTTCGTC-AGTTG
390 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCCGCTCGCCCGCTCATTTCGTCGA-TTG
* * *
833788 GCTTAGGCATACGGAGTTCATTCCCAGTCTCAGACTCGACCA-ATTGAGGGTTGTGGCAGCATGA
454 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCGACCAGACTGAGGGTTGTGGCAGCAGGA
* ** * * * *
833852 TCGGCAGCATGCAGAGGGGGACCC-GGTCGATCCCCGGCTTGCGTATCCCGCCCCTCTGGCCGAC
518 TCGGCAGCACGCAGAGGGGGACCCAACTCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGC
* * *
833916 TGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCA-TTCTCAGTCTAAGC
583 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTC-CAGTCTAAGC
* * * * *
833980 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGATTACGGCATCACATGCTGGGCT
647 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCT
*
834045 CGGGTATGTGTTGGTGCCGCA--TTT-TT-----------C-T--TC---G--T---CGGAGAAC
712 C-GGCATGTGTTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCACCGGAGAAC
* * * * * ** *
834085 CTGACCGGCAGCATTGGGGTTCTGGCGATCGGGGGGCGAGGGGGGGTGTGTGCATATGATGTGCG
776 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCG
* * * * *
834150 ATGGTTGCTGGTACTTGACCTTTATATT-GCCCCCTATCCCTCATCAAACCTTGGGAACTCACA-
841 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
834213 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
1 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * * *
834278 GGACACCTTTTGCAAATGATCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTATG
66 GGACACTTTTTTCAAATG-TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
834343 CAAGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGGCGCCAAAACTCCATCCG-AAAAAT
130 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * *
834407 TTT-AAAAATCCTTGAACCCGCCAAAAAGTTTCGAAAAATCGTGAAAAATAGAAAACGAGTCATC
195 TTTAAAAAATCC-CGAA-CCG-TAAAAAGTTTC-AAAAATCATGAAAAATAGAAAACGAGTCATC
* *
834471 TTGCCATGAAACTTCAGGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
256 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
834536 CATTGCCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTG
321 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
834601 CGCATCTCGTCTCTTTGGCCGGGCGTAGTG--C-ACCG--CTCCGCCCGCCCACTCATTTCGTCG
386 CGCATCCCGTCTCTCTGGCC-GGCGTAGTGCCCGCCCGCCCTCCGCTCGCCCGCTCATTTCGTC-
* * * * *
834661 GA-TGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCGAGCCAGA-TCGAGGGATGCGGTA
449 GATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-CCAGACT-GAGGGTTGTGGCA
* * * * * ** *
834724 GTAGGATCAGTAGCACACAGAGGGGGACCCGA-TCGATCC-CTAACTTACGCATCCTGCCCCTCT
512 GCAGGATCGGCAGCACGCAGAGGGGGACCCAACTCGATCCTC-GGCTTGCGCATCCTGCCCCTCT
* * * *
834787 GGCCGGCTGAGCGCCCGCACGCTCGTTTCATTGGTTGACTTAGGCATACGAAGTTCA-TTCTCAT
576 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTC-CAG
* **
834851 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCACATG
640 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATG
* * * * *
834916 CTGGGCTCAGGCATGTGTTGGTGCCGCATTTTTCCTCATCGGGGCACCATCGCCAGAGCATCACC
705 CTGGGCTC-GGCATGTGTTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCACC
* * *
834981 GGAGAACCTGACCGACGACATTGGGATTCTGACGATC-GGGGGGGCCGGGGGGTGTGTGTGCACA
769 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGGCC-GGGGG-GTGTGTGCACA
835045 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
832 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
835110 AACTCACAC
897 AACTCACAC
* *
835119 CCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
1 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
835184 GGACACTTTTTTCAAATGGCACAAAATCTTGTACACTTCGCGTTTTTAGCTGATTTTTTTTTTTT
66 GGACACTTTTTTCAAATGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA--ATTTTTTTGT
*
835249 GCATGCTAACAAAAATA
129 GCATGCCAACAAAAATA
835266 AAAATGGCAT
Statistics
Matches: 3287, Mismatches: 351, Indels: 194
0.86 0.09 0.05
Matches are distributed among these distances:
874 9 0.00
875 14 0.00
876 182 0.06
877 94 0.03
878 424 0.13
879 42 0.01
880 3 0.00
881 1 0.00
882 1 0.00
884 1 0.00
887 2 0.00
889 1 0.00
890 1 0.00
892 2 0.00
893 267 0.08
894 277 0.08
895 17 0.01
898 2 0.00
900 3 0.00
901 6 0.00
902 229 0.07
903 215 0.07
904 134 0.04
905 195 0.06
906 558 0.17
907 27 0.01
908 1 0.00
910 2 0.00
911 1 0.00
912 7 0.00
913 558 0.17
914 11 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (905 bp):
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCCGCTCGCCCGCTCATTTCGTCGATTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGACCAGACTGAGGGTTGTGGCAGCAGGATCG
GCAGCACGCAGAGGGGGACCCAACTCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGC
ATGTGTTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
CGACGGCATTGGGGTTCCGACGATCGGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
Found at i:833988 original size:26 final size:26
Alignment explanation
Indices: 833952--834004 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
833942 GTTGACTTAG
*
833952 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
833978 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
834004 G
1 G
834005 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:834861 original size:26 final size:26
Alignment explanation
Indices: 834830--834882 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
834820 GTTGACTTAG
* *
834830 GCATACGAAGTTCATTCTCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
834856 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
834882 G
1 G
834883 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:836444 original size:26 final size:26
Alignment explanation
Indices: 836408--836460 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
836398 GTTAACCGAG
*
836408 GCATATGGAGTTCATTCACAGTCTAA
1 GCATATGGAGTTCATTCACAATCTAA
*
836434 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATGGAGTTCATTCACAATCTAA
836460 G
1 G
836461 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCACAATCTAA
Found at i:837292 original size:26 final size:26
Alignment explanation
Indices: 837262--837314 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
837252 GTTGACCGAG
837262 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
837288 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
837314 G
1 G
837315 ATCGAACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:838529 original size:854 final size:862
Alignment explanation
Indices: 837296--839397 Score: 2534
Period size: 853 Copynumber: 2.4 Consensus size: 862
837286 AAGCATATGG
* * * * *
837296 AGTTCATTCCCAGTCTAAGATCGAAC-CAGACCGAGGGTTGC-ACAGAACATGCTGGGCTCGGGC
1 AGTTCATTCCCAGTCTAAGATCGAACTGAGACCAAAGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * *
837359 ATGTGCTGGTGCCGCATTTTTCTTCGCCTGGGCACCATCGTCAGAGCATCACCGGAGAACCTGAT
66 ATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGTCGGAGCA-CACC-GAGAACC----
* * * *
837424 CGGGGTATTGGGGTTCCGACGATCGAGGAGGCCGGGGGGGTGTGCGTACATGATG-CACGATGGG
125 CGCGGCATTGGGGTTCCGACGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTC-CGATGGG
** *
837488 TGCTGGTACTTGGTGCTTATATTGGCCCCCTATCCCTCAGCAAACCTCGAGAACTCACAACCCCA
187 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-ACCCCA
* *
837553 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATAGGGACA
251 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TTGAATGGGGACA
* *
837618 CTTTTTTCAAATGGCCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGC
315 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAATTTTTTGTGCATGC
*
837683 CAAAAAAAATACAAGGATCACGCCTACCAAGTTTGGAGCCAAAAATAATTCTGAAAAAAA-TTTA
380 CAAAAAAAATACAAGGATCACGCCTACCAAGTTTGGAGCCAAAAATAATT-TCAAAAAAATTTTA
*
837747 AAAAATCCCGAACCATAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
444 AAAAATCCCGAACC-GAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
837812 GAAACTTCACGGGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATGAAAATGGCATTGGC
508 GAAACTTCACAGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** *
837877 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-AGCTTGCGCATC
573 ACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA-CTTGCGCATC
* * * * ** *
837941 -CTATCTCTCTGGTCGGCGTAGTG-CG-G-G-C-GC-GCTCGTTTCGTCGGTTGGCTTAGGCATA
637 TC-ATCTCTCTGGCCGACGTAGTGCCGCGCGCCACCTGCTCATTTCGTCAATTGGATTAGGCATA
* * * *
837999 CAGAGTTCATTCCCAGTGTAAGATTAGACCAGATGGAGGGTTACGGCAACAGGATC-AGCAGCAC
701 CAGAGATCATTCCCAGTCTAAGATTAGACCAGATCGAGCGTTACGGCAACAGGATCGA-CAGCAC
* * * * * ** **
838063 GCTA-AGGGGGGACCC-GATCGATCCCTGGCTTGTGGATCCCGCCCCTCTGGTGGGTTGAACGCC
765 -ATAGA-GGGGGACCCAG-TCAATCCCTGGCTTGCGCATCCCGACCCTCTGGCCGACTGAACGCC
*
838126 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGA
827 CGCACGCTCATTTCATGGGTTGACTTAGGCATACGA
*
838162 AGTTCATTCCCAGTCTAAGATCGAACTGA-ACCAAAGGTTTCGGCAGCACATGCTGGGCTCGGGC
1 AGTTCATTCCCAGTCTAAGATCGAACTGAGACCAAAGGTTGCGGCAGCACATGCTGGGCTCGGGC
* *
838226 ATGTGTTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGTCGGAG-A-ACC-TG-ACCCGCGGC
66 ATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGTCGGAGCACACCGAGAACCCGCGGC
** * *
838287 ATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTACGCACATGACGTCCGATGGGTGCTGGTAC
131 ATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTCCGATGGGTGCTGGTAC
* *
838352 TTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCAT
196 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCATAAAGAGCAT
* * *
838417 TTGAGATTTTACAGGTTTGCTGTCAGTAGCCATAAAAGTGTTTGAACCGGGGACACTTTTTTCAA
261 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA-TGGGGACACTTTTTTCAA
**
838482 ATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAAAT
325 ATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAAAT
* * * * ** **
838547 ACAAGGATCATGTCTACCTAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAAATCTTGA
390 ACAAGGATCACGCCTACCAAGTTTGGAGCCAAAAATAATTTCAAAAAAATTTTAAAAAATCCCGA
* ** ** * *
838612 ACCGCAAAAAGTTTTGAAAATTGTGCAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
455 ACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAG
838677 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATAT
520 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATAT
838742 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCTCATCTCTCTGGC
585 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCTCATCTCTCTGGC
* **
838807 CGATGTAGTGCCCGCCCGCCCGTCCACCTGCTCATTTCGTCAATTGGATTAGGCATATGGAGATC
650 CGACGTAGTG-CCG--CG--CG-CCACCTGCTCATTTCGTCAATTGGATTAGGCATACAGAGATC
* * * ** **
838872 ATTCCCAGTCTAAGATTGGATCGGATCGAGCGTTGTGGCAGTAGGATCGACAGCACATAGAGGGG
709 ATTCCCAGTCTAAGATTAGACCAGATCGAGCGTTACGGCAACAGGATCGACAGCACATAGAGGGG
* * * *
838937 GACCCAGTCAATCCCTGGCTTGCGCATCCCTACCCTCTTGCCGACTGAGCGCTCGCACGCTCATT
774 GACCCAGTCAATCCCTGGCTTGCGCATCCCGACCCTCTGGCCGACTGAACGCCCGCACGCTCATT
* *
839002 TCGTGGGTTGACTTAGGCATACGG
839 TCATGGGTTGACTTAGGCATACGA
* *
839026 AGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTTAGATCAGATCAGACCGAGGGTT
1 AGTTCATTCCCAGTCTAAG---AT--CG---A-----A--C-T-G---AGACCA-A---A-GGTT
* * *
839091 GCGGCAGCACATGCTGGGCTCGGACATGTGCTGTTGCCACATTTTTCTTCGTCGGGGCACCATCG
41 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCG
* *
839156 TCGGAGCATCACCGGAGAACCTAACCGGCGGCATTGGGGTTTCGACGATCGGAGGGGTCGGAGGG
106 TCGGAGCA-CACC-GAGAA-C---CC-GCGGCATTGGGGTTCCGACGATCGG-GGGGCCGG-GGG
* **
839221 GTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
162 GTGTGCGCACATGATGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
**
839286 CAAACCTTAAGAACTCACACTCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
227 CAAACCTCGAGAACTCACAC-CCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
839351 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAA
291 CATTAAAGTGTTTG-AATGGGGACACTTTTTTCAAATGGTCACAAAA
839398 GCAGTAGGAT
Statistics
Matches: 1053, Mismatches: 120, Indels: 88
0.84 0.10 0.07
Matches are distributed among these distances:
853 193 0.18
854 183 0.17
855 81 0.08
856 7 0.01
857 21 0.02
858 1 0.00
861 4 0.00
862 1 0.00
863 1 0.00
864 101 0.10
865 75 0.07
866 37 0.04
867 64 0.06
869 1 0.00
872 1 0.00
877 1 0.00
879 1 0.00
880 1 0.00
881 1 0.00
884 1 0.00
885 3 0.00
886 1 0.00
889 1 0.00
890 70 0.07
891 1 0.00
893 3 0.00
895 1 0.00
896 1 0.00
897 1 0.00
900 2 0.00
901 22 0.02
902 7 0.01
903 80 0.08
904 82 0.08
905 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (862 bp):
AGTTCATTCCCAGTCTAAGATCGAACTGAGACCAAAGGTTGCGGCAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGTCGGAGCACACCGAGAACCCGCGGC
ATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTCCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCATAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAAATA
CAAGGATCACGCCTACCAAGTTTGGAGCCAAAAATAATTTCAAAAAAATTTTAAAAAATCCCGAA
CCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAGG
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATG
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCTCATCTCTCTGGCC
GACGTAGTGCCGCGCGCCACCTGCTCATTTCGTCAATTGGATTAGGCATACAGAGATCATTCCCA
GTCTAAGATTAGACCAGATCGAGCGTTACGGCAACAGGATCGACAGCACATAGAGGGGGACCCAG
TCAATCCCTGGCTTGCGCATCCCGACCCTCTGGCCGACTGAACGCCCGCACGCTCATTTCATGGG
TTGACTTAGGCATACGA
Found at i:839054 original size:26 final size:26
Alignment explanation
Indices: 839018--839067 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
839008 GTTGACTTAG
839018 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
839044 GCATATGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
839068 TAGATCAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:839536 original size:26 final size:26
Alignment explanation
Indices: 839507--839559 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
839497 GTTGACTTAG
*
839507 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
839533 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
839559 G
1 G
839560 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:841327 original size:26 final size:26
Alignment explanation
Indices: 841291--841343 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
841281 GTTGACTTAG
*
841291 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
841317 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
841343 G
1 G
841344 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:841667 original size:897 final size:897
Alignment explanation
Indices: 839409--841862 Score: 3398
Period size: 897 Copynumber: 2.7 Consensus size: 897
839399 CAGTAGGATT
* * * * *
839409 GGCAGCATGCAGAGGGGGACCCAACCGATCCCCGACTTACGCATCCCACCCCTATGGCTGGCTGA
1 GGCAGCATGCAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCC-GCCTTCTGGCCGGCTGA
* * * *
839474 GCACCCGCATGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATAT
65 GCCCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATAC
* *
839539 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCACATTCTAGGCTCGGG
130 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCACATTCTAGGCTCAGG
839604 CATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGA
195 CATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATC-CCGGAGCATCACCGGAGAACCTGA
* * *
839669 CCGGGGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG-TGCAAGG
259 CCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTTG-ATGG
* *
839733 GTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCCCATCAAACCTC-AGAAACTCACA-CCC
321 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG-AACTCACACCCC
* *
839796 CTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGA
385 CTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
839861 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATGTTTTTGTGCAT
450 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATGTTTTTGTGCAT
*
839926 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-GAAAAAATTTT
515 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAAAATTTT
* ** * *
839990 AAAAAATCCCGAACC-AAAAAAGTTTTGAAAATTGTCAAAAATAGAAAAGGAGTCGTCTTGCCAT
580 AAAAAATCTCGAACCGAAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * * * *
840054 TAAACTTTACGTGAAGGCTTAACGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGC
645 GAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCACTGGC
840119 ATGAGGAAATATGAAGATATGCCTAAACCCACCTAACACCCTATAGATCCACGACTTGCGCATCC
710 ATGAGGAAATATGAAGATATGCCTAAACCCACCTAACACCCTATAGATCCACGACTTGCGCATCC
* * * * * * *
840184 CGTCTCTCTGGTCGGCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTTGTCAGTTGGCTTAGG
775 CGTCTCTCTAGCCGACGTAGT--CCGCCCACCCGACCGACCGCTCATTTCGTCAGTTGGCTTAGG
* ** * ** * *
840249 CATACGGACTTTCTTCCCAGTCTAAGATTGGATCAGACCAAGGGTTATGGTAGCAGGATC
838 CATACGGACGTTCTTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACAGCAGCAAGATC
* * * * * * ** * *
840309 AGTAGCACGGAGAGGGGTACCCGACCGATCCCCGGCTCGCGCATCCCGCCTCTCTGACCGGCTAA
1 GGCAGCATGCAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCCGCCT-TCTGGCCGGCTGA
* * * * *
840374 G-CACCGCACGCTTGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGAATAC
65 GCCCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATAC
* * * *
840438 GGAGTTCATTCCCAGTCTAATATCAGACCAGACTGAGGGTTGCGGTAGCACATGCTTGGCTCAGG
130 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCACATTCTAGGCTCAGG
* *
840503 CATGTGTTGGTGCCGCATTTTTTTTCGTCGGGGCACCAT--C---G--TCA---GAGAACCTGAC
195 CATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCCCGGAGCATCACCGGAGAACCTGAC
* * *
840558 CGGTGGCATTGGGGTTCC-AGCGAGT-GGGGGGCCGGGGGGTGTGTGCACATGATGTACGATGGG
260 CGGCGGCATTGGGGTTCCGA-CGA-TCGGGGGGCCGGGGGGTGTGCGCACATGATGT-TGATGGG
*
840621 TGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
322 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
840686 TAAAGAGCATTTGAAATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACA
387 TAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * * *
840751 CTTTTTTAAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAAGC
452 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATGTTTTTGTGCATGC
* * *
840816 CAATAAGAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAAAATTTTAA
517 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAAAATTTTAA
* * ***
840881 AAAATCTCAAACCGCAAAAAGTTTCAAAAATCAAGAAAAATAGAAAACGAGTCGTCTTGCCATGA
582 AAAATCTCGAACCGAAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
***
840946 AACTTCACGTGAAGGCTTGGGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCACT-GCAA
647 AACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCACTGGC-A
* * * * * *
841010 TGCA-GAAATATGAAGATGTGCCTAAACCTATCTACCACCCTATCGATCCACGGCTTGCGCATCC
711 TG-AGGAAATATGAAGATATGCCTAAACCCACCTAACACCCTATAGATCCACGACTTGCGCATCC
* * * *
841074 CGTTTCTCTAGCCGACGTAGT-C-CCCGCCCGACCGATCGCTCATTTCGTCGGTTGGCTTAGGCA
775 CGTCTCTCTAGCCGACGTAGTCCGCCCACCCGACCGACCGCTCATTTCGTCAGTTGGCTTAGGCA
* * ** *
841137 TATGGA-GTTCATT-CCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAAGATC
840 TACGGACGTTC-TTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACAGCAGCAAGATC
* ** *
841194 GGCAGCATGCAGAGGGGGA-CCGATCGATCCTTGACTTACGCATCCTGTCCTTCTGGCCGGCTGA
1 GGCAGCATGCAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCCG-CCTTCTGGCCGGCTGA
841258 GCCCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATAC
65 GCCCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATAC
* * *
841323 GGAGTTCATTCCCAGTCTAAGATCAGACCAGA-TCAAGGGTTGCAGCAGCACATTCTGGGCTC-G
130 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAGCACATTCTAGGCTCAG
841386 GCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTG
194 GCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATC-CCGGAGCATCACCGGAGAACCTG
* *
841451 ACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGGTTCTGCGCACATGATGTTTGATG
258 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGG-TGTGCGCACATGATG-TTGATG
841516 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
320 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * *
841581 CTTAAAGAGCATGTGAGATTTTATAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
385 CTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
841646 CAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAACTTTTTATCTAAATGTTTTTGTGCAT
450 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATGTTTTTGTGCAT
* * *
841711 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTCCTAAAAAAATTT
515 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTC-GAAAAAATTT
* *
841775 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAATTTGTGAAAAATAGAAAACGAGTCGTCTTGCCA
579 TAAAAAATCTCGAACCGAAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCA
841840 TGAAACTTCACGTGAAGGCTTAA
644 TGAAACTTCACGTGAAGGCTTAA
841863 GATCGGACTG
Statistics
Matches: 1361, Mismatches: 161, Indels: 67
0.86 0.10 0.04
Matches are distributed among these distances:
884 73 0.05
885 165 0.12
886 61 0.04
887 67 0.05
888 208 0.15
889 27 0.02
890 170 0.12
891 4 0.00
892 3 0.00
893 1 0.00
894 1 0.00
895 38 0.03
896 12 0.01
897 330 0.24
898 1 0.00
899 152 0.11
900 48 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
GGCAGCATGCAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCCGCCTTCTGGCCGGCTGAG
CCCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCACATTCTAGGCTCAGGC
ATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCCCGGAGCATCACCGGAGAACCTGACC
GGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTTGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATGTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAAAATTTTAAAAAA
TCTCGAACCGAAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAACGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCACTGGCATGAGG
AAATATGAAGATATGCCTAAACCCACCTAACACCCTATAGATCCACGACTTGCGCATCCCGTCTC
TCTAGCCGACGTAGTCCGCCCACCCGACCGACCGCTCATTTCGTCAGTTGGCTTAGGCATACGGA
CGTTCTTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACAGCAGCAAGATC
Found at i:842369 original size:518 final size:518
Alignment explanation
Indices: 841353--842381 Score: 1607
Period size: 518 Copynumber: 2.0 Consensus size: 518
841343 GATCAGACCA
* * *
841353 GATCAAGGGTTGCAGCAGCACATTCTGGGCTCGGCATGTGTTGGTGCCACATTTTTCTTCGTCGG
1 GATCAAGGGTTGCAGCAGCACATGCAGGGCTCGGCATGTGTTGGTGCCACATTTTTCTTCATCGG
*
841418 GGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
66 GGCACCATCGCCGGAGCATCACCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCGGGGG
*** *
841483 GCCAGGGGGGTTCTGCGCACATGATGTTTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
131 GCCAGGGGGG-T-TGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCAC
*
841548 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATGTGAGATTTTATAGGTTTGC
194 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATGTGAGATTTTACAGGTTTGC
* *
841613 TTCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTAC
259 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * * *
841678 ACTTCAACTTTTTATCTAAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
324 ACTCCAACTTTTTAGCTAAATGTTTTTGTGCATGCCAACAAAAAGAAAAGGATCACATCTACCAA
* *
841743 GTTTGGGGCCAAAACTCCTCCTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAT
389 GTTTGGGGCCAAAACTCCTCCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* *
841808 TTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGATCGGACTG
454 TCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGATCGGACTG
* * *
841873 GATCAAGGGTTGCGGCAGCACATGCAGGGCTCGGGCTTGTGTTGGTGCCGCATTTTTCTTCATCG
1 GATCAAGGGTTGCAGCAGCACATGCAGGGCTC-GGCATGTGTTGGTGCCACATTTTTCTTCATCG
* ** * *
841938 GGGCACCATCGCTGGAGCATCGTCGGAGAACCTAACCGACGGCATTGGGGTTCCGGCGATTGGGG
65 GGGCACCATCGCCGGAGCATCACCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGA-TCGGG
842003 GGGCC-GGGGGG-TGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCAC
129 GGGCCAGGGGGGTTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCAC
* * * * *
842066 TATCCCTCATCAAACCTCGAGAACTCGCCCCCCCTTTAAGAGCATTTGAGATTTTCCAGGTTTGC
194 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATGTGAGATTTTACAGGTTTGC
842131 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
259 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
842196 ACTCCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAGAAAAGGATCACATCTACCAA
324 ACTCCAACTTTTTAGCTAAATGTTTTTGTGCATGCCAACAAAAAGAAAAGGATCACATCTACCAA
* * * *
842261 GTTTGGGGCCAAAATTCCT-TTCGAAAAAATTTTAAAAAATCCCGAATCGTAAAAA-TCTTCAAA
389 GTTTGGGGCCAAAACTCCTCCT-AAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT-TTCAAA
*
842324 AATCGTGAAAAATAGAAAACGAGTCATCTTTCCATGAAACTTCACGTGAAGGCTTAAG
452 AATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAG
842382 GGACCATTGT
Statistics
Matches: 464, Mismatches: 41, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
517 2 0.00
518 335 0.72
520 29 0.06
521 89 0.19
522 9 0.02
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (518 bp):
GATCAAGGGTTGCAGCAGCACATGCAGGGCTCGGCATGTGTTGGTGCCACATTTTTCTTCATCGG
GGCACCATCGCCGGAGCATCACCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCGGGGG
GCCAGGGGGGTTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTA
TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATGTGAGATTTTACAGGTTTGCTG
CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
TCCAACTTTTTAGCTAAATGTTTTTGTGCATGCCAACAAAAAGAAAAGGATCACATCTACCAAGT
TTGGGGCCAAAACTCCTCCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
GTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGATCGGACTG
Found at i:842734 original size:26 final size:26
Alignment explanation
Indices: 842704--842753 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
842694 GTTGACTTAG
842704 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
842730 GCATACGGAGTTCATTTCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
842754 TAGATCGGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:843628 original size:26 final size:26
Alignment explanation
Indices: 843592--843644 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
843582 GTTGACTTAG
843592 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
843618 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
843644 G
1 G
843645 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:844005 original size:900 final size:895
Alignment explanation
Indices: 841860--845154 Score: 4537
Period size: 900 Copynumber: 3.7 Consensus size: 895
841850 CGTGAAGGCT
* * * * * *
841860 TAAGATCGGACTGGATCAAGGGTTGCGGCAGCACATGCAGGGCTCGGGCTTGTGTTGGTGCCGCA
1 TAAGATCGGACCGGATCAAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCTGCA
* * * * *
841925 TTTTTCTTCATCGGGGCACCATCGCTGGAGCATCGTCGGAGAACCTAACCGACGGCATTGGGGTT
66 TTTTTCTTCTTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACCGCATTGGGGTT
* * * *
841990 CCGGCGATTGGGGGGGCC-GGGGG-GTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCT
131 CCGACGATCGGGGGCGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* * * *
842053 TATATTGGCCCACTATCCCTCATCAAACCTCGAGAACTCGCCCCCCCTTTAAGAGCATTTGAGAT
196 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
*
842118 TTTCCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
261 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
842183 CAAAATCTTGTACACTCCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAGAAAAGGA
326 CAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * *
842248 TCACATCTACCAAGTTTGGGGCCAAAATTCCTTTCGAAAAAATTTTAAAAAATCCCGAATCGTAA
391 TCACTTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAA
* *
842313 AAA-TCTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTTCCATGAAACTTCACGTGAAGGC
456 AAAGT-TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
*
842377 TTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
520 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * * *
842442 GTAACTAAACCCACCTACCACCCTATCGATCAACGACTTGTGCATCCCGTCTCTCTGGCCGGCGT
585 GTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGT
* * * *
842507 AGTG-C-CCGCCCGCCCACTCCTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTTTCAGTCTA
650 AGTGCCGCCGCTCG-CCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTA
* * * * * *
842570 AGATCAGACCGAACCGAGGGATGTGGCGGCAGGATTGGCAGCACGCAGAGGGGGATCCGACCGAT
714 AGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGA-GGGGACCCGATCGAT
* ** * * *
842635 CCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTGGTTTCATAGGTTGAC
778 CCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGAC
*
842700 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTC
843 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * *
842753 TTAGATCGGACCGGACCGAGGG-T-T-GC-G-----GC--AGC-CGAGCATGTGTTGGTGCT-CA
1 TAAGATCGGACCGGATCAAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCTGCA
* * *
842805 TTTTTCTTCGTCGGGACACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTT
66 TTTTTCTTCTTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACCGCATTGGGGTT
* * * *
842870 CCGATGATCGGGGGGGCCGAGGGGGTGTGCGCTCATGATGTACGATGGGTGCTGGTACTTGGCCC
131 CCGACGATCGGGGGCGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * *
842935 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAAAGCATATGAGA
195 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
843000 TTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGG-CACTTTTTTCTAATGGT
260 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGGACACTTTTTTCAAATGGT
* * * * *
843064 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTTTGTGCATACCAACAAAATTACAAT
324 CACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * * * *
843129 GATCACTTCGAACAAGTTTGGAGCCAAAAGTACTTTCGAAAAAATTTTGAAAAATCCCGAACCGC
389 GATCACTTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGC
* *
843194 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAATG
454 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
843259 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCATAAATATGATGA
519 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * *
843324 TGTACCTAGACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATG
584 TGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACG
*
843389 TAGTGACCGCTCGCTCGCGGCACTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCAT-A
649 TAGTG-CCGC-CGCTCGC--CACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC-TCA
** ** * * * * *
843453 GTCTAAGATTGGATTGGACCAAGGGTTATGGTAGTAGGATCGACAGCACGCAGAGAGGGACCCGA
709 GTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAG-GGGACCCGA
* * * *
843518 TCGATCCCCGGCTTGCGCAACCCATCCCTCTAGCCGACTGAGCACCCGCACGCTCGTTTCGTGGG
773 TCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGG
*
843583 TTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCATACGGAGTTCATTCCCAGTC
838 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
** * * *
843641 TAAGATCGGATTGGATCAAGGGTTGTGACAGCACATGCTTGGCTCGAGCATGTGTTGGTGCTGCT
1 TAAGATCGGACCGGATCAAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCTGCA
* ** * **
843706 TTTTTCTTTTTCGGGGCACCATCACCGGAGCATCG-CTGGAGAACCTGATTGGCCGCATTGGGAC
66 TTTTTCTTCTTCGGGGCACCATCACCGGAGCATCGTC-GGAGAACCTGACCGACCGCATTGGGGT
* * * *
843770 TCCGACAATCGGGGGCACCGGGGGGTGTGCGCACATGATGCGCGATGGGTGCTGGCACTTGGCCC
130 TCCGACGATCGGGGGCGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
843835 TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCGTAAAGAGCATTTGAGA
195 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * *
843900 TTTTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTC
260 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
843965 ACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
325 ACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * **
844030 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-GAAAAAAATTTTAAAAAATCCAGAACAAC
390 ATCACTTCTACCAAGTTTGGGGCCAAAACTCCTTTCG-AAAAAATTTTAAAAAATCCCGAACCGC
*
844094 AAAAAGTTTCAAAATTCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
454 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
844159 CTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGA
519 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * *
844224 TGTACCTACACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCTGCCG
584 TGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACG
* *
844289 TAGTGCCCGCCCGTCTAC-CCACTCGTTTCGTTGGTTGGCTTAGGCATACAGAGTTCATTCTCAG
649 TAGTG-CCG-CCG-CT-CGCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAG
* * * * *
844353 TCTAAGATCAGACCAGACCGAGGGTTGCGACAACAGGATCGGCAGCATGCAGAGGAGGACCCGAT
710 TCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGG-GGACCCGAT
* * * * *
844418 CGTTCCCCGACTTGCACATCCCACCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
774 CGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
* * * *
844483 TGACTTAGGCATGCAGAGTTCATTCCCAGTCTAAGCATACGGATTTCATTCTCAGTC
839 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * * *
844540 TAAGATCGGATCGGA-CTGAGCGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCTGT
1 TAAGATCGGACCGGATC-AAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCTGC
*** * * * * *
844604 ATTTTTCTTCGTT-GGGGCACCATCGTTGGAGAATCGTCAGAGAACCTGATC-AGCGAGATTGGG
65 ATTTTTCTTC-TTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACCG-CATTGGG
* *
844667 GTTCCTG-CGATCGGAAGGGC-CAGGGGGGTGCGCGCACATGATGTGCGATGGGTGCTGGTACTT
128 GTTCC-GACGATCGG--GGGCGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
844730 GGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
190 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
844795 TGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAA
255 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
844860 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAA-ACAAAAT
320 TGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA-AAAAT
* * * *
844924 ACAAGGATCA-TGTCTACCACGTTTGGGGCCAAAACTCC-TTCCAAAAAAGTTTTTAAAAATCCT
384 ACAAGGATCACT-TCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA-TTTTAAAAAATCCC
* * *
844987 GAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAT
447 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
845052 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATTGGCATGTAGAAAT
512 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* *
845117 ATGAAGATGTGCTTAAACCCACCTACCACCCTATCGAT
577 ATGAAGATGTACCTAAACCCACCTACCACCCTATCGAT
845155 GCATGGTGTC
Statistics
Matches: 2117, Mismatches: 240, Indels: 83
0.87 0.10 0.03
Matches are distributed among these distances:
880 77 0.04
881 15 0.01
882 7 0.00
883 447 0.21
884 7 0.00
885 1 0.00
886 2 0.00
887 6 0.00
888 214 0.10
889 3 0.00
890 3 0.00
891 1 0.00
892 2 0.00
893 18 0.01
897 2 0.00
898 5 0.00
899 321 0.15
900 907 0.43
901 78 0.04
902 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
TAAGATCGGACCGGATCAAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGCTGCA
TTTTTCTTCTTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACCGCATTGGGGTT
CCGACGATCGGGGGCGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
CAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
TCACTTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAA
AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
TACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTA
GTGCCGCCGCTCGCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAG
ATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGACCCGATCGATCCC
CGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTA
GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
Found at i:844530 original size:26 final size:24
Alignment explanation
Indices: 844501--844550 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
844491 GCATGCAGAG
844501 TTCATTCCCAGTCTAAGCATACGGAT
1 TTCATTCCCAGTCTAAG-AT-CGGAT
*
844527 TTCATTCTCAGTCTAAGATCGGAT
1 TTCATTCCCAGTCTAAGATCGGAT
844551 CGGACTGAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.22
25 2 0.09
26 16 0.70
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (24 bp):
TTCATTCCCAGTCTAAGATCGGAT
Found at i:854382 original size:26 final size:25
Alignment explanation
Indices: 854361--854410 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
854351 AGGCATACGT
854361 AGTTCATTCCAAGTCTAAGCATCGG
1 AGTTCATTCCAAGTCTAAGCATCGG
*
854386 AGTTCATTCCCAGTCTAAG-ATCGG
1 AGTTCATTCCAAGTCTAAGCATCGG
854410 A
1 A
854411 CCAGACTGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 6 0.25
25 18 0.75
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (25 bp):
AGTTCATTCCAAGTCTAAGCATCGG
Found at i:854838 original size:896 final size:895
Alignment explanation
Indices: 853489--855141 Score: 2529
Period size: 895 Copynumber: 1.8 Consensus size: 895
853479 TAGGCATACA
* *
853489 GAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTGCGACAGCATATGCTGGGCTCGAGC
1 GAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGATTGCGACAGCACATGCTGGGCTCGAGC
* *
853554 ATGTGCTGGTGCTGTATTTTTCTTCATCGAGGCACCATCACTGGAGCATCGCCGGAGAACCTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCACTGGAGCATCGCCGGAGAACCTGAC
* * * *
853619 CGGCGACATTGGGGTTTCGACGATCGGGGGCCGGGTGGGTGTGCTCACATGATGTGCTATGGGTG
131 CGGCGACATTGGGGTTTCGACGATCGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTA
* * *
853684 CTGGTACTCGACCCTTCTATTGGCCCCCTATCCCTCATCAAAGCTCGAGAACTCACACCCCCTTA
195 CTGGTACTCGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCATTA
* *
853749 AAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
260 AAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
* * *
853814 TTCTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTACCTGAATTTTTTTGTGCATGCCA
325 TTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTACCTGAATTTTTTTATGCATGCCA
* * *
853879 AAAACAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTTATTTTGAAAGAATTTAAAAA
390 AAAACAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACTTATTCTGAAAAAATTT-AAAA
* *
853944 AATCCCGAACC-GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCGATGAA
454 AATCCCGAACCACT-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
* * **
854008 ACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAGAATGGCATTGGCATG
518 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
* * *
854073 CAGAAATATGAAGATGTGCCTAAGCCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGT
583 CAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCAATCCACGGCTTGCGCATCCCGT
854138 CTCTCTGGCCGGCGTAGTACCC-A-CCCACCCGCCCGCTCGTTTCGTC-AGTTGGCTTAGGCATA
648 CTCTCTGGCCGGCGTAGTACCCGACCCCACCCGCCCGCTCGTTTCGTCGA-TTGGCTTAGGCATA
* * * *
854200 CGGAGTTCATTCCCAGTCTAAGATGGGACCAGATAGAGGGTTGCAGCAGTAGGATTGGCAGCATG
712 C-AAGTTCATTCACAGTCTAAGATCGGACCAGACAGAGGGTTGCAGCAGTAGGATTGGCAGCATG
854265 CAAAGGGAGACCCGGCCGATCCCCGACTTGTGCATCCCGCCCCTCTTGCCAGCTGAGCTCCGTAC
776 CAAAGGGAGACCCGGCCGATCCCCGACTTGTGCATCCCGCCCCTCTTGCCAGCTGAGCTCCGTAC
854330 GCTCGTTCCGTGGGTTGACTTAGGCATACGTAGTTCATTCCAAGTCTAAGCATCG
841 GCTCGTTCCGTGGGTTGACTTAGGCATACGTAGTTCATTCCAAGTCTAAGCATCG
** *
854385 GAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGATTGCGGCAGCACATGCTGGGCTC-AGG
1 GAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGATTGCGACAGCACATGCTGGGCTCGA-G
* * * *
854449 CATGTGCTGGTGCCGCATTTTTCTTC-GCTGGGGCACCATC-GTCGGAGCATCGTCGGAGAACCT
65 CATGTGCTGGTGCCGCATTTTTCTTCATC-GAGGCACCATCACT-GGAGCATCGCCGGAGAACCT
* *
854512 GATCGGCGGCATTGGGG-TTCTGACGATCGGGGG-GGTCGGGGGTGTGCGCACATGATGTGCGAT
128 GACCGGCGACATTGGGGTTTC-GACGATCGGGGGCGG--GGGGGTGTGCGCACATGATGTGCGAT
* * *
854575 GGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
190 GGGTACTGGTACTCGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
854640 CATTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCA-TAGCCATTAAAGTGTCTAAAATGGGG
255 CATTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGG
* *
854704 ACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTACCTGAATTTTTTTATGCA
320 ACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTACCTGAATTTTTTTATGCA
*
854769 TGCCAACAAA-TATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAAC-TACTTCTGAAAAAAT
385 TGCCAA-AAACAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACTTA-TTCTGAAAAAA-
* * *
854832 TTTAAAAAATCTCGAACCACTAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGC
447 TTTAAAAAATCCCGAACCACTAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGC
854897 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
512 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
854962 GGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGTCTTGTGCA
577 GGCACACAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCAATCCACGGCTTGCGCA
* * *
855027 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGACCGCCCTCCCGCCCGCTCGTTTTGTCGATTGGCTT
642 TCCCGTCTCTCTGGCCGGCGTAGTACCCGA-C-CCCACCCGCCCGCTCGTTTCGTCGATTGGCTT
* * *
855092 AGGCATACAAGTTCATTGACAGTCTAAGATCGGACCGGACCGAGGGTTGC
705 AGGCATACAAGTTCATTCACAGTCTAAGATCGGACCAGACAGAGGGTTGC
855142 GGTAGCACAT
Statistics
Matches: 681, Mismatches: 61, Indels: 28
0.88 0.08 0.04
Matches are distributed among these distances:
894 4 0.01
895 344 0.51
896 261 0.38
898 35 0.05
899 36 0.05
900 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (895 bp):
GAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGATTGCGACAGCACATGCTGGGCTCGAGC
ATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCACTGGAGCATCGCCGGAGAACCTGAC
CGGCGACATTGGGGTTTCGACGATCGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTAC
TGGTACTCGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCATTAA
AGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
TCTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTACCTGAATTTTTTTATGCATGCCAA
AAACAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACTTATTCTGAAAAAATTTAAAAAA
TCCCGAACCACTAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAA
AAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGGCGTAGTACCCGACCCCACCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACAAG
TTCATTCACAGTCTAAGATCGGACCAGACAGAGGGTTGCAGCAGTAGGATTGGCAGCATGCAAAG
GGAGACCCGGCCGATCCCCGACTTGTGCATCCCGCCCCTCTTGCCAGCTGAGCTCCGTACGCTCG
TTCCGTGGGTTGACTTAGGCATACGTAGTTCATTCCAAGTCTAAGCATCG
Found at i:855766 original size:716 final size:716
Alignment explanation
Indices: 854386--855863 Score: 2329
Period size: 716 Copynumber: 2.1 Consensus size: 716
854376 TAAGCATCGG
* * *
854386 AGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGATTGCGGCAGCACATGCTGGGCTCAGGCA
1 AGTTCATTGCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCA
* *
854451 TGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGATC
66 TGTGCTAGTGCCGCATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
* * *
854516 GGCGGCATTGGGGTTCTGACGATCGGGGGGGTCGGGGGTGTGCGCACATGATGTGCGATGGGTAC
131 GGCGGCATTGGGGTTCCGACAATCGGGGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTAC
*
854581 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCATTAA
196 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCATTAA
* *
854646 AGAGCATTTGAGATTTTATAGGTTTGCTACCATAGCCATTAAAGTGTCTAAAATGGGGACACTTT
261 AGAGCATTTGAGATTTTACAGGTTCGCTACCATAGCCATTAAAGTGTCTAAAATGGGGACACTTT
* *
854711 TTTGAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTACCTGAATTTTTTTATGCATGCCAAC
326 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTACCTGAATTTTTTTATGCATGCCAAA
* *
854776 AAATATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACTACTTCTGAAAAAATTTTAAAAAA
391 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACTACTTCCGAAAAAATTTTAAAAAA
* * *
854841 TCTCGAACCACTAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
456 TCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
* *
854906 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAA
521 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCACAAAAATGGCATTGGCACACAA
* * **
854971 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGTCTTGTGCATCCCGTCTC
586 AAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTACGCATCCCGTCTC
* * * * *
855036 TCTGGCCGGCGTAGTGCCCGACC-GCCCTCCCGCCCGCTCGTTTTGTCGATTGGCTTAGGCATAC
651 TCTAGCCAGCGTAGTGCCCG-CCAACCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATAC
855100 -A
715 GA
* * *
855101 AGTTCATTGACAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCAGGCA
1 AGTTCATTGCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCA
855166 TGTGCTAGTGCCGCATTTTTCTTCG-TCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
66 TGTGCTAGTGCCGCATTTTTCTTCGCT-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
855230 CGGCGGCATTGGGGTTCCGACAATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
130 CGGCGGCATTGGGGTTCCGACAATCGGGGGGGCC-GGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
855294 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCCCACCCCCTT
194 ACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCATT
* *
855359 AAAGAGCATTTGAGATTTTACAGGTTCGCTACCAGTAGCCATTAAAGTGTCTGAAATGTGGACA-
259 AAAGAGCATTTGAGATTTTACAGGTTCGCTACCA-TAGCCATTAAAGTGTCTAAAATGGGGACAC
* * *
855423 TTGTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT-AACTTTTTTTATGCATG
323 TT-TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTACCTGAA-TTTTTTTATGCATG
* * *
855487 CCAAAAAAAATACAAGGATCATGTCTACTAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
386 CCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACTACTTCCGAAAAAATTTTA
* **
855552 AAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATG
451 AAAAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATG
855617 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCACAAAAATGGCATTGGCA
516 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCACAAAAATGGCATTGGCA
** * * **
855682 TGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACTCTATTGATCCACGGCTTACGCATCCC
581 CACAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTACGCATCCC
* * *
855747 GTCTCTCTAGCCAGCGTAGTGCCCGCCAATCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGC
646 GTCTCTCTAGCCAGCGTAGTGCCCGCCAACCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGC
*
855812 ATACGG
711 ATACGA
* * *
855818 AGTTCATTGCCAGTCTAAGATCAGACTAGACCGAGGGTTGTGGCAG
1 AGTTCATTGCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAG
855864 TAGGACCGAC
Statistics
Matches: 694, Mismatches: 62, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
714 8 0.01
715 271 0.39
716 375 0.54
717 40 0.06
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (716 bp):
AGTTCATTGCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCA
TGTGCTAGTGCCGCATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
GGCGGCATTGGGGTTCCGACAATCGGGGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTAC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCATTAA
AGAGCATTTGAGATTTTACAGGTTCGCTACCATAGCCATTAAAGTGTCTAAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTACCTGAATTTTTTTATGCATGCCAAA
AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACTACTTCCGAAAAAATTTTAAAAAA
TCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCACAAAAATGGCATTGGCACACAA
AAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTACGCATCCCGTCTC
TCTAGCCAGCGTAGTGCCCGCCAACCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACG
A
Found at i:855998 original size:26 final size:26
Alignment explanation
Indices: 855969--856021 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
855959 GTTGACTTAG
*
855969 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
*
855995 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
856021 G
1 G
856022 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCAGTCTAA
Found at i:856228 original size:71 final size:71
Alignment explanation
Indices: 856093--856240 Score: 161
Period size: 71 Copynumber: 2.1 Consensus size: 71
856083 TTTTTCTTCA
* ** * * **
856093 CCGGGGCACCATCGTCAGAGCATCACCGAAAAACCTGACCGACGGTATTGGGGTTTCGTTGATCG
1 CCGGGGCACCATCGCCAGAGCATCACCGAAAAACCTGACCGACGACATTAGGGTTCCGACGATCG
856158 GGGGGG
66 GGGGGG
** * * **
856164 CCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGGTGACATTAGGGTTCCGACGATCG
1 CCGGGGCACCATCGCCAGAGCATCACCGAAAAACCTGACCGACGACATTAGGGTTCCGACGATCG
*
856229 GGTGGG
66 GGGGGG
*
856235 TCGGGG
1 CCGGGG
856241 GGTGGGTGTG
Statistics
Matches: 62, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
71 62 1.00
ACGTcount: A:0.20, C:0.26, G:0.37, T:0.17
Consensus pattern (71 bp):
CCGGGGCACCATCGCCAGAGCATCACCGAAAAACCTGACCGACGACATTAGGGTTCCGACGATCG
GGGGGG
Found at i:856998 original size:26 final size:26
Alignment explanation
Indices: 856950--856999 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
856940 TGACTTAGGC
* *
856950 ATACGGAGTTCATTCCTAGTCTAAGT
1 ATACGGAGTTCATTCCCAATCTAAGT
*
856976 ATACGGAGTTCTTTCCCAATCTAA
1 ATACGGAGTTCATTCCCAATCTAA
857000 AATCAGACTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGT
Found at i:859203 original size:26 final size:26
Alignment explanation
Indices: 859173--859223 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
859163 TTGACTTAGG
859173 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
*
859199 CATACGGAGTTCATTCCTAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
859224 GATCGGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:860097 original size:26 final size:26
Alignment explanation
Indices: 860061--860113 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
860051 GTTGACTTAG
* *
860061 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAATCTAA
*
860087 GCATATGGAGTTCACTCCCAATCTAA
1 GCATACGGAGTTCACTCCCAATCTAA
860113 G
1 G
860114 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAATCTAA
Found at i:861409 original size:873 final size:873
Alignment explanation
Indices: 857518--873318 Score: 17489
Period size: 897 Copynumber: 17.9 Consensus size: 873
857508 AGGCTTAAGG
* * * *
857518 GCATTTTTCTTCGCCTAGGGCACCATCGCCGAATCATCGTCGGAGAACCTGACCGGTGGCATTGT
1 GCATTTTTCTTCGCC-AGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGG
* * * * *
857583 GGTTCCGACGAT-AGGGGGGCCAGGTGGTGTGTGCACATGATGTACGATGGGCGCTGGTACTTGG
65 GGTTCCGACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* ** * *
857647 CCCTTATATTGG-CCCCTAATCCCTCATTAAATTTTGAGAACTCACACCCCCATAAAGAGCATTT
130 CCCTTATATTGGCCCCCT-ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * *
857711 GAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTCCAAAT
194 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * * *
857776 GGTCACAAAATCATGTACAGC-TCGAGTTTTTAGCTTAATTTTTTTATGCAGGCCAACAAAAATA
259 GGTCACAAAATCTTGTACA-CTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATA
* * * *
857840 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAAGATTTTAAAAAATCCCGAA
323 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCGGAA
* ** * * *
857905 CAGCCAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTG
388 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * * **
857970 AAGGCTTAAGGGACCACTGTATGAATTTCCAATCCATAAAAATGGCATTGGCACATAGAAATATG
453 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATG
*
858035 AAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
518 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * * **
858100 GGCGTAGTGCCTGCCCGCCCGTCCGCCCGCTTGTTTCATCTGTTGGTTTAGGCATACGGACCTCA
583 GGCGTA--G--TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
** * * * * * *
858165 TTCCTGGTCTAAGATCAAATCGGACCGAAGGTGTG--GCAGCAAGATTGACAGCACGTAGAGGGG
644 TTCCCAGTCTAAGATCAGACCGGACCGAGGGT-TGCAGCAGCAGGATCGACAGCACGCAGAGGGG
* * * *
858228 GACCCGGTCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCT-TGT
708 GACCCGGTCGATCCCTGACTTGCACATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCT-T
*
858292 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
772 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTA
*
858357 CGACAGCACATGCTGGGGTCGGGCATGTGCTGGTGCC
837 CGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * *
858394 GCATTTTTCTTCACCGGGGAACCAT---C---G---C-T-GGAGAACCTGACTGGCGGCATTGGG
1 GCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
** * * * * * * *
858448 GTTCCGGTGAACGGGGGGGCTGGGGGGGTATGGGCACATGACGTGCGATGGGTGCTGGAACTTGG
66 GTTCCGACGATCAGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
858513 CTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAATGAGCATTTG
130 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
858578 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATG
195 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
858643 GTCATAAAATCTTGTACACTTTGAGTTTTTAGCTGAATATTTTTGTGCATGCCAATAAAAATACA
260 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACA
** *
858708 AGGATCACGTCTACCAAGTTTGGAACCAAAACTCCTTCCGAAAAAATTTTAAAAAGTCCGGAACC
325 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCGGAACC
* *
858773 ATAAAAATTTTCAAAAAT-AGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
390 GTAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* **
858837 AGGCTTAAGGGACCATGGTATGAATTTACAAGAAATAAAAATGGCATTGGCATGTAGAAATATGA
454 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGA
* * * *
858902 AGATGTACCTAAACCCACCTACCACCCTATCAATCCACGGCTTACGCATCCCGTCTCTCTAGCCG
519 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
** *
858967 GCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCATTTGGCTTAGGCATACGGAGTTCATTACC
584 GCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
** * ** * * **
859032 AGTCTAAGATTGGACCAGACAAAGGGTTGCAGCAGTAGGATTGACAGCACATAGAGGGGGACCCG
649 AGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCG
* * ** * * * * * * *
859097 GTCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCAACCGAGTGCCCGTATGCTCTTTTCATGG
714 GTCGATCCCTGACTTGCACATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCTTTTCGTGG
859162 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAACATACGGAGTTCATTCCTAGTCTAAGAT
779 GTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---------A-TC----A-
* * **
859227 CGGACCGGACCGAGGGTTGCGACAGCACATGCTAGGCTCAAGCATGTGCTGGTGCC
820 --GACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
** ** *
859283 GCATTTTTCTTCTACAGGGCACCATCGCTAGAGCATCG-CAGGAGAACCTGACCGGCGACATTGG
1 GCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGTC-GGAGAACCTGACCGGCGGCATTGG
** * * * *
859347 GGTTCCGTTGATC-GGGGGACCGGGGGTTGTGCGCACAAGATGTGCAATGGGTGCTGGTACTTGG
65 GGTTCCGACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
859411 CCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
130 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
859475 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGACACTTTATTCAAATG
195 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * *
859540 GTCACAAAATCTTGTATACTTCGACTTTTTAGCTAAATATTTTTGTGCATGCCAACAAAAATAAA
260 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACA
* *
859605 AGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCC-AACAAAATTTTAAAAAATTTC-GAA
325 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA-AAAATTTTAAAAAA-TCCGGAA
* * * * *
859668 CGGTAAAAAGTTTCAAAAATCGTGAAAAATACAAAACGAGTCGTCTTGCCTTGAAACTTCATGTG
388 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * *
859733 AAGGCTCAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGTAGAAAAATG
453 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATG
* *
859798 AAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCC
518 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * **
859863 GGCGTAGT--------GCCCGCCCGCTCGCTTCCTCAGTTGGCTTAGGCATATGCTGTTCATTCC
583 GGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
** ** * * * * *
859920 CAGTCTAAGATTGGGTCGGACTGAGGGTTGCGGTAGCAAGATCGACAGCATGCAGAGGGGGACCC
648 CAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCC
* * * * *
859985 GGTCGAT-CCTCGACTTGCGCATCCCGCCCCTCTAGCCGACTGAGCGCCCACACGCCCATTTCGT
713 GGTCGATCCCT-GACTTGCACATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCTTTTCGT
860049 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCACTCCCAATCTAAG
777 GGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG----------ATC--AG
* * * *
860114 ATCGGATCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATATGCTGGTGCC
821 A-C----CGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * *
860172 ACATTTTTCTTCACC--GG------CG-C--ACCATCGTCGGAGAACCTGACCTGCGGCATTGGG
1 GCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
* * *
860226 GTTCCGACGATCAGGGGGGCCGGGGGGGTGTGCGCATATGGTGTGCGATGGGTGCTGGTACTTAG
66 GTTCCGACGATCAGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
860291 CCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACACCCCCTGAAAGAGCATTTG
130 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
860356 AGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
195 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * * * *
860421 CTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTATGGATGCCAATAAAAATACA
260 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACA
* * *
860486 AGGATCCCGTCTACCAAGTTTGGGCCCAAAACTCCTTCCGAAAAAATTTTAAAAACTCCGGAACC
325 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCGGAACC
* * * *
860551 TTAAAAATTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCCCGTGAA
390 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
** *
860616 GGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGACATTGGCATGTAGAAATATGAA
455 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAA
*
860681 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGG
520 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* ** * * * * *
860746 CGTAGTGCCCGCCCACTTGCCCGCTCATTTCGTCGTTTGGCTTAGTCATATGGAGTTCATTCCTA
585 CGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* ** * *
860811 GTCTAAGATCAGACCAGAAAGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGA
650 GTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGG
* * * * *
860876 TCGATCCCTGACTTGCACTTCTCGCCCCTCTGGCCGACTGAGCGCCCGTATGCTCTTTTCATGGG
715 TCGATCCCTGACTTGCACATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCTTTTCGTGGG
* * *
860941 TTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGTA
780 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCA
861006 CATGCTGGGCTCGGGCATGTGCTGGTGCC
845 CATGCTGGGCTCGGGCATGTGCTGGTGCC
* * **
861035 GCATTTTTCTTCGCCAGGGCACCACCGCCGGAGCATCGCCTAAGAACCTGACCGGCGGCATTGGG
1 GCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
* *
861100 GTTCCGACGATCAGGGGGGCCAGGGGGGTGTGTGCACATGATGTGCAATGGGTGCTGGTACTTGG
66 GTTCCGACGATCAGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
861165 CTCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTA
130 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * *
861229 AGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTATTCAAATG
195 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
*
861294 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATAAA
260 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACA
* ***
861359 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAACAATTTTAAAAAATTTTGAACC
325 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCGGAACC
* *
861424 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC-TCGAAACTTCATGTGA
390 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT-GAAACTTCACGTGA
* *
861488 AGGCTCAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
454 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGA
* ** * * * *
861553 TGATGTAACTAAACCCACCTACCACCCTATCGATCCTCGGCTTGTGCATCTCGTCACTCTGGCCG
519 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* ** * *
861618 GCGTTGTGCCCGCCTGCCTGCCCGCCCGCTAATTTCGTCGGTTGTCTTAGGCATACGAAGTTCAT
584 GCGTAGTGCCCG-C--CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * ** * *
861683 TCCCAGTCTGAGATCAGACTGGACTGATGGTTGTGGCAGCAGGATCGGCAGCACGGAGAGGGGGA
645 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGA
* * * * * * * * * * * *
861748 CCCGGCCGAT-CCTCGACTTACGCATCCCGCCCCTCTAGTCGGCTGAGTGCCCGTATGCCCGTTC
710 CCCGGTCGATCCCT-GACTTGCACATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCTTTT
* * *
861812 CGTGGGTTGACTTAGGCAGACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACG
774 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACG
** *
861877 GTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCC
839 ACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
** * * * * *** *
861912 -CTATTTTTCTTCATCGGGGCACCATTGTCGGAGCATCGTCGGAGAACCTGATCAATGACATTGG
1 GC-ATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGG
* * * *
861976 GGTTCCGATGATCGGGGGGGCCGGGAGGGTGTGCGCACATGATGTGTGATGGGTGGTGGTACTTG
65 GGTTCCGACGATCAGGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
862041 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
129 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * *
862106 AAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTATTCAAAT
194 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
*
862171 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATAA
259 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATAC
* * ***
862236 AACGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAACAATTTTAAAAAATTTTGAAC
324 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCGGAAC
*
862301 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC-TCGAAACTTCATGTG
389 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT-GAAACTTCACGTG
* * *
862365 AAGGCTCAAGGGACCATTGTATGAATTTACAAGCCGTAAAAATGGCATTGGCATGCAGAAATATG
453 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATG
* ** * * * * *
862430 ATGATGTAACTAAACCCACCTACCACCCTATCGATCCTCGGCTTGTGCATCTCGTCACCCTGGCC
518 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * ** *
862495 AGCGTTGTGCCCGCCTGCCTGCCCGCTAATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCC
583 GGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * ** ** *
862560 CAGTCTGAGATCAGACTGGACTGATGGTTGTGGCAGCAGGATCGGTAGCACGGAGAGGGGGACCC
648 CAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCC
* * * * * * * * * *
862625 GGTCGAT-CCTCGACTTACGCATCCCGCCCCTCTAGTCGGCTGAGTGCCCGTACGCCCGTTCCGT
713 GGTCGATCCCT-GACTTGCACATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCTTTTCGT
* * ** **
862689 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGCATTGAGGGTTACGGTA
777 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACA
*
862754 GCACATGCTGGGCTCGAGCATGTGCTGGTGCC
842 GCACATGCTGGGCTCGGGCATGTGCTGGTGCC
** * * * * *** *
862786 -CTATTTTTCTTCATCGGGGCACCATTGTCGGAGCATCGTCGGAGAACCTGATCAATGACATTGG
1 GC-ATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGG
* * *
862850 GGTTCCGATGATCGGGGGGGCCGGGAGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTG
65 GGTTCCGACGATCAGGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * * *
862915 GCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCAAGAATTCACACCCCATTAAAGAGCATTT
129 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
862980 GAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
194 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
*
863045 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
259 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATAC
** * *
863110 AAGGATCACGTCTACCAAGTTTGGGGCTGAAACTCCTTCCG-AAAAATTTTAAAAACTCTGGAAC
324 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCGGAAC
*
863174 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
389 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
** **
863239 AGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCATTGGCACATAGAAATATGA
454 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGA
* * * **
863304 AGATGTGACTAAACCCACCTAGCACCCTATCGATCCACGGCTTGCGTATCTTGTCTCTCTGGCCG
519 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * * *
863369 ACGTAGTGCCCGCCCACTCGTCCGCTCGTTTCATCGTTTGGCTTAGGCATACGGAGTTCATTCCC
584 GCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * *
863434 AGTCTAAGATCAGACCGGACAGAGGGTTGCAGTAGCAGGATCGACAGCACGTAGAGGGGGACCCG
649 AGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCG
* * * * * * * *
863499 GCCGAT-CCTCGACTTGCACTTCTCGCCCCTCTGACCGGCTGAGCGCCCGTATGCTCTTTTCATG
714 GTCGATCCCT-GACTTGCACATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCTTTTCGTG
* * *
863563 GGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAACATACGGAGTTCATTCCCAGTCTAAGA
778 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-AAGAT-C--AG---A---CC-G-----GA
* *
863628 TCAGATCAGACCGAGGATTGCGACAGTACATGCTGGGCTCGGGCATGTGCTGGTGCC
827 -C----C-GA--G-GG-TTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * ** * **
863685 GTATTTTTCTTCACCAGGGCACCACCGTCGGAGCATCACCGGAGAACCTGACTGGCGATATTGGG
1 GCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
* * * *
863750 GTTTCGACGATCAGGGGAGCCGAGGGGGTGTGCGCACATAATGTGCAATGGGTGCTGGTACTTGG
66 GTTCCGACGATCAGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
863815 CTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
130 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * * *
863880 AGATTTTATAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTATTCAAATG
195 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
863945 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGTGCATGCCAACAAAAATAAA
260 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACA
* * * *
864010 ATGATCACCTCTACCACGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAACTTTC-GAA
325 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA--TCCGGAA
* * *
864074 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC-TCGGAACTTCATGT
388 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT-GAAACTTCACGT
* ** *
864138 GAAGGCTCAAGGGAAGATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATAT
452 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATAT
* *** * * * *
864203 GATGATGTAATTAAACCCACCTACCACCCTATCGATCCTCGGCTTACGCATCTCGTCACTCTGGC
517 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * *
864268 CGGCGTTGTGCCCGCCCGCCTGCCCGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTC
582 CGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* ** ** * *
864333 CCAGTCTGAGATCAGACTAGACCGAGGGTTGTGGCAGTAGGATCGGCAGCACGCAGA-GGGGACC
647 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACC
** * * * * * * *
864397 CGACCGAT-CCTCGACTTGCGCATCCCGCCCCTCTAGTCGGCTGAGCGCCCGCACGCCCGTTCCG
712 CGGTCGATCCCT-GACTTGCACATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCTTTTCG
* * * * * **
864461 TTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTATGGT
776 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGAC
*
864526 AGCACATGCTGGGCTCGAGCATGTGCTGGTGCC
841 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
** * * * * ** *
864559 -CTATTTTTCTTCATCGGGGCACCGTTGCCGGAGCATCGTCGGAGAACCTGATCAACGGCATTAG
1 GC-ATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGG
* * *
864623 GGTTCCGATGATC-GGGGGGCCGGGCGGGTGTGCGCACATGATGTGTGGTGGGTGCTGGTACTTG
65 GGTTCCGACGATCAGGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * *
864687 TCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAATTCACACCCCATTAAAGAGCATTT
129 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
864752 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAAT
194 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
864817 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGGCAACAAAAATAC
259 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATAC
** * * *
864882 AAGGATCACGTCTACCAAGTTTGGGGCTGAAGCTCCTTCCGAAAAAATTTTAAAAACTCTGGAAC
324 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCGGAAC
* * *
864947 CGTAAAAATTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
389 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
** **
865012 AGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCATTGGCACATAGAAATATGA
454 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGA
* * *
865077 AGATGTGACTAAACCCACCTAGCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCG
519 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * *
865142 GCGTAGTGCCCGCCCACTCGCCCGCTCGTTTCGTCGTTTGGCTTAGGCATACGGAGTTCATTCCC
584 GCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* ** * * *
865207 AGTCTAAGATCAGACTGGATAGAGGGATGCAGTAGCAGGATCGACAGCACGCAGAGGGGGATCCG
649 AGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCG
** * * * ** * * *
865272 ACCGATCCCCGACTTGCACTTCCTGCCCCTCTGGCCGACTGAGCTTCCGTATGCTCTTTTCATGG
714 GTCGATCCCTGACTTGCACATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCTTTTCGTGG
865337 GTTAACTTAGGCATACAGAGTTCATTCCGAGTCTAAACATACGGAGTTCATTCCCAGTCTAAGAT
779 G-----TT--G---AC----TT-A----G-G------CATACGGAGTTCATTCCCAGTCTAAGAT
* * * *
865402 CAGACCGGACTGAGGGTTACGATAGTACATGCTGGGCTTGGGCATGTGCTGGTGCC
818 CAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* ** * *
865458 GCATTTTTCTTCGCCAGGGCACCACCGCCGGAGCATCACCGGAGAACCTGACCAGC-GTATTGGG
1 GCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
* *
865522 GTTCCGACGATCA-GGGGGCCGAGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGC
66 GTTCCGACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* **
865586 TCTTATATTGGCCCTTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
131 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
865651 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTATTC-AATGG
196 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
865715 TCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATAAAA
261 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAA
* * * * * *
865780 CGATCACGTCTTCCAAGTTTGGGGCCAAAGCTCCTTCCGAAAATATTTTAAAAAATTTC-AAACC
326 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA-TCCGGAACC
* * *
865844 TTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTCGCC-TCGAAACTTCATGTGA
390 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT-GAAACTTCACGTGA
* * *
865908 AGGCTCAAGGGACCATTGTATGATTTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
454 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGA
* ** * * *
865973 TGATGTAACTAAACCCACCTACCACCCTATCGATCCTCGGCTT-CTGCATCTCGTCACTCTGGCC
519 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC-GCATCCCGTCTCTCTGGCC
* * * * **
866037 GACGTTGTGCCCGCCTGCCTGCCCGCTAATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
583 GGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * ** *
866102 CAGTCTGAGATCAGACTC-AATCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
648 CAGTCTAAGATCAGAC-CGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACC
* * * * * * * * *
866166 CGGCCGATCCTTGACTTACGCATCCCGCCCCTCTAGTCGACTGAGCGCCCGCACGCCCGTTCCGT
712 CGGTCGATCCCTGACTTGCACATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCTTTTCGT
* * * * * * **
866231 GGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTATGATCGGACCAGACTGAGGGTTATGGTA
777 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACA
*
866296 GCACATGCTGGGCTCGAGCATGTGCTGGTGTCC
842 GCACATGCTGGGCTCGGGCATGTGCTGGTG-CC
* ** * * * * **
866329 -TATTTTTCTTCATCGGGGCACCGTTGCCGGAGCATCGTCGGAGAACCTGATCAACGGCATTGGG
1 GCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
* * * *
866393 GTTTCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGC
66 GTTCCGACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* *
866458 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAATTCACACCCCATTAAAGAGCATTTGA
131 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
866523 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGACACTTTTTTCAAATGG
196 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
866588 TCACAAAATCTTGTACA-TTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAAAAATACAA
261 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAA
** * *
866651 GGATCACGTCTACCAAGTTTGGGGCTGAAACTCCTTCCGAAAAAATTTTAAAAACTCTGGAACCG
326 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCGGAACCG
* * *
866716 TAAAAAGTTTCAAAAATCGTAAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
391 TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* ** **
866781 GCTTAAGGGACCACTGTATGAATTTACAAGAAATAAAAATGGCATTGGCACATAGAAATATGAAG
456 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
* * * *
866846 ATGTGACTAAACCCACCTAGCACCCTATCGATTCAAGGCTTGCGCATCCCGTCTCTCTGGCCGGC
521 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * *
866911 GTAGTGCCCGCCCACTCGCCCGCTCGTTTCGTCGTTTGGCTTAGGCATACGGAGTTCATTCCCAG
586 GTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
** ** * * **
866976 TCTAAGATCAGACCGGATAGAGGGTTGCAATAGCAGGATCGACAGCACGTAGAGGGGGATCCGAC
651 TCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGT
* * * * ** * * *
867041 CGATCCCCGACTTGCACTTCCCGCCCCTCTAGCCGGCTGAGCTTCCGTATGCTCTTTTCATGGGT
716 CGATCCCTGACTTGCACATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCTTTTCGTGGG-
*
867106 TAACTTAGGCATACAGAGTTCATTCCCAGTCTAAACATACGGAGTTCATTCCCAGTCTAAGATCA
780 -----T-----T---GA---C-TT---AG-----GCATACGGAGTTCATTCCCAGTCTAAGATCA
* * *
867171 GACCGGATCGAGGGTTACGATAGTACATGCTGGGCTCGGGCATGTGCTGGTGCC
820 GACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * *
867225 GCATTTTTCTTCGCCAGGGCACCACCGTCGGAGCATCATCGGAGAACCTGACCGGCGGTATTGGG
1 GCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
* *
867290 GTTCCGACGATCA-GGGGGCCGGGGGGTGTGCGCACATGATGTGCAATTGGTGCTGGTACTTGGC
66 GTTCCGACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* ** * *
867354 TCTTATATTGGCCCTTTATCCCTCATCAAACCTCGAGAATTCACACCCCATTAAAGAGCATTTGA
131 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
867419 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
196 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
867484 TCACAAAATCTTGTACACTTTGCGTTTTTAGCTGGAAT-TTTTTGTGCATGCC-ACAAAAAACAC
261 TCACAAAATCTTGTACACTTCGAGTTTTTAGCT-GAATATTTTTGTGCATGCCAAC-AAAAATAC
* * * * *
867547 AAGGATCATGTCTACCAAGTTTGGTGCCAAAACACCTTCCGAAAAATTTTTAAAAAATCCTGAAC
324 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCGGAAC
* *
867612 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTGA
389 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * *
867677 AGGCTTAAGGGACCATTCTATGAATTTACAATCCATAAAAATGGCACTGGCATGTAAAAATATGA
454 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGA
* * * *
867742 AGATGTGCCTAAACCCATCTACCACCCTATCGATCTACGGCTTGCGCATCCCGTCTCTATAGCCG
519 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * *
867807 ACGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGTTTAGGCATACAGAGTTCATTCCT
584 GCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * * * * *
867872 AGTTTGAGATCTGATCAGATCGAGGCTTGCAGCAGCAGGAT-TAGCAGCATGCAGAGGGGGACCC
649 AGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCC
** * * * * * *
867936 GACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGTACACT-TGTTTCGT
713 GGTCGATCCCTGACTTGCACATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCT-TTTCGT
868000 GGGTTGACTTAGGAATACGAAGTTCATTCTCAGTCGAAGCATACGAAGTTCATTCCCAGTCTAAG
777 GGGTTGAC-T-----TA-G--G--CA---T-A--C---G-----G-AGTTCATTCCCAGTCTAAG
* *
868065 ATCAGACCAGACCGAAGGTTAC-AGCAGCA-ATGCTGGGCTCGGGCATGTGCTGGTGCC
816 ATCAGACCGGACCGAGGGTTACGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* ** * *
868122 GCATTTTTCTTCGCC-GAGGCACCATCGTCGGAGCATCACCGGAGAACCGGACCGGCAGCATTGG
1 GCATTTTTCTTCGCCAG-GGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGG
* *
868186 GGTTCCGAAGATCGGGGGGGCC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
65 GGTTCCGACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * *
868250 CTCTTATATTGGCCCGCTATCCCGCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
130 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
868315 AGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAAACTTTTTTCAAATG
195 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * *
868380 GTCACAAAATCTTGTACACTACAAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAAAATACA
260 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACA
* * * * *
868445 AGGATCATGTCTACCAAGTTTGGAGCCAAAACTCCTTCCGAAAAAGTTTTTAAAAATCCCGAACC
325 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCGGAACC
* *
868510 GTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTGAA
390 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * * ** *
868575 GGCTTAAGGGACCATTGAATGAATTTACGAGCCCTAAAAATGGCATTGGCACATAGAAATCTGAA
455 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAA
* * * * *
868640 GATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGCATCCTGTCTCTTTAGCCGA
520 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * * * *
868705 CGTAGAGCCCGCCCGCCCGCCTGCTCGTTTTGTCGGTTGGCTTATGCATACAGAGTTCATTACCA
585 CGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * * * * *
868770 GTCTAAGATCAGACCGGATCGAGGGTTACAGTAGTAGGATCAACCGGATGTAGAGGGGGACCCGG
650 GTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGG
* * *
868835 TCGATCCCCT-ACTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGGACG-TGCGTTTT-GT
715 TCGAT-CCCTGACTTGCACATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCT-C-TTTTCGT
*
868897 GGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTTTAAG
777 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A---CC-G-----G
*
868962 ATCAAATCAGACCAAGGGTTACGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
826 A-C----C-G----AGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
** * * * * * *
869020 ATATTTTTCTTTGTCAGGGCACCATCGTCGGAGCATCATCGGAGAACTTGACCGGCAGCATTGGG
1 GCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
* * *
869085 GTTCCGACGATCGAGGGGTCGAG-AGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTAGT
66 GTTCCGACGATC-AGGGG--G-GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
869149 TGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAACTCACACCCCCTTAAAGAGCAT
127 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
869214 TTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATCGGGACACTTTTTTCAA
192 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * * *
869279 ATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCT-CA-ATTTTT-TACGTGCCAAAAAAAAT
257 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAAT
** * * *
869341 ACAAGGATCTTGACTACCAACTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGA
322 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCGGA
* * * * *
869406 ACCGCAAAAATTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTGTTGCCATGAAACTTCACGT
387 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * *
869471 GAAGGCTCAAGGGACCATTTTATGAATTTACAA-CCATAAAAATGGCATTGGCATGCAGAAATAT
452 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATAT
* * * *
869535 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGCATCCCGTCTTTCTAGC
517 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * *
869600 CTGCGTAATGCCCGCCCGCCCGCCCGCTCACTCGTTTCGTCGGTCGGCTTAGGCATACAGAGTTC
582 CGGCGTAGTGCCCGCCCGCCCGCCCG----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * ** * * * *
869665 ATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTACAATAGTAGGATTGACAGCATGCAGCGGGG
643 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGG
** * ** * *
869730 GACCCGACCGATCCC-CAGCTTGTGCATCCC-CCCCTCTGGCCGGA-TGAGCGCCCGCATGCTCG
708 GACCCGGTCGATCCCTGA-CTTGCACATCCCGCCCCTCTGGCC-GACTGAGCGCCCGCACGCTCT
* * *
869792 TTTCTTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGGCTAAGCATACGAAGATCATTCCCAG
771 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A----C--
* * *
869857 TCTAAGATCAGACCAGACCGAAGGTTGCGACAGCACATGCTGGCCTCAGGCATGTGCTGGTGCC
823 -C---G----GACC-GA--G--GGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * *
869921 ACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG-CTAGAGAACCTGATCGGCGGCATTGG
1 GCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGTC-GGAGAACCTGACCGGCGGCATTGG
* * *
869985 GGTTCCGGCGATCAGGGGGG-CTGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGG
65 GGTTCCGACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
870049 CCCTTATATTGGCCCCCTATCCCCCATCAAACCTCGAGAACTCACACCCCCTTAATGAGCATTTG
130 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* **
870114 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACTTTTTTTTCAAATG
195 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
870179 GTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATATTTTTGTGCATGCCAATAAAAATACA
260 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACA
** *
870244 AGGATCACGTCTACCAAGTTTGGAACCAAAACTCCTTCCGAAAAAATTTTAAAAAGTCCGGAACC
325 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCGGAACC
* * *
870309 ATAAAAATTTTCAAAAAT-AGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGA
390 GTAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
**
870373 AGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCATTGGCATGTAGAAATATGA
454 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGA
* *
870438 AGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTG
519 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
*
870503 GCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCC
584 GCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * ** *
870568 AATCTAAGAAT-GGACCAGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC
649 AGTCTAAG-ATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCC
* * ** * * *
870632 GGTCGATCCCCGGCTTGCACATCCCGCCAATCTGGCTGGCTGAGTGCCCGCACGCTCGTTTT-GT
713 GGTCGATCCCTGACTTGCACATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTC-TTTTCGT
* * * *
870696 GGGTTGACTTAGGCATAC-GACGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTATGGC
777 GGGTTGACTTAGGCATACGGA-GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGAC
* * *
870760 AGCACATGCTGGCCTCGGGTATGTGCTGGTGCT
841 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
** * *
870793 GCATTTTTCTTCGTCGGGGCGCCATCGTCGGAGCATTGCCGGAGCATCGCCGGAGAACCTGACCG
1 GCATTTTTCTTCG-CCAGG-G-CA----C----CATCGCCGGAGCATCGTCGGAGAACCTGACCG
* *
870858 GCGGCATTGGGGTTCCGGCGATC-GAGGGGGCCAGGGGGGTGTGCGAACATGATGTGCGATGGGT
55 GCGGCATTGGGGTTCCGACGATCAG-GGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGT
* * * * * * *
870922 GCTAGTACCTGGGCCTTATATTGGCCCCCTATCCCTAATCAAACCACTAGAATTCACACCCCCTT
118 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
870987 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
183 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * *
871052 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCAATTTTTTAGCTGAATTTTTTTTTGCATGCC
248 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCC
* * * *
871117 AAAAAAAATACAAAGATCATGTATACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
313 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* ** * *
871182 AAATCCTGAACCGTAAAAAGTTTCAAAAATTTTGAAAAGTAGAAATCGAGTCGTCTTGCCATGAA
378 AAATCCGGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * *
871247 ACTTCACGTGAAGGCTCAAGGGACCACTGTATGAATTTACAAACCATAAAAATGGCATTGGAATG
443 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * *
871312 CAGAAATATAAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGT
508 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * *
871377 CTCTCTGGCCGACGTGGTGCCCGCTCGCACGCCTGCCCGCCCGCTCGATTCGTTGGTTGGCTTAG
573 CTCTCTGGCCGGCGTAGTG--C-C-CG--C-CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * **
871442 GCATATGGAGTTCATTCCCAGTCTAAGATCAAACTGGACTGAGGTTTGCAGCAGAAGGATCGGTA
630 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACA
* * * * *
871507 ACACGTAGAGGGGGACCCGGTAGAT-CCTCGGCTTGCACATCCCGCCCCTCTAGCCGACTGAGCG
695 GCACGCAGAGGGGGACCCGGTCGATCCCT-GACTTGCACATCCCGCCCCTCTGGCCGACTGAGCG
* **
871571 CCCGCACGCTCGTTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
759 CCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--A
* * *
871636 GTTCATTCCCAGTCTAAGAACATATCCGACCGAGGGTTGCGGCAGCACATGCTGGGCTAGGGCAT
820 G---A----C---C---G---------GACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCAT
*
871701 GTGCTGGTGTC
863 GTGCTGGTGCC
* * * * * * *
871712 GCATTTTTCTTCGTCGGGGCACCAT--------CA-C--CAGAGATCCTGACTGGCAGTATTGGG
1 GCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
*
871766 GTTCCGGCGATC-GGGGGGACCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
66 GTTCCGACGATCAGGGGGG-CC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
871830 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
129 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
871895 GAGATTTTATAGG-TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAAT
194 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
871959 GGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATAC
259 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATA-
*
872023 CAAGGATCACGTCTTACCAAGTTTGGGGCCAAAA-TCCTTTCGAAAAAATTTTAAAAAATCTC-G
323 CAAGGATCACGTC-TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CGG
** * * *
872086 AACCACAAAAAAGTTTCAAAAATCATGAAAAATAGAAATCGAGTCGTCTTGCCATGAAACTCCAT
386 AACC-GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
872151 GTGAAGGCTTAA-GGACCATTGTATTAATTTAACACAGCCAAAAAAAAGGCATTGGGCCATCG--
450 GTGAAGGCTTAAGGGACCATTGTATGAATTT-ACA-AGCCATAAAAATGGCATT-GG-CAT-GTA
** * * *
872213 GAAATATGAAGATGTGCCT-AACCCAGGATACCAACCCTATC-ATCCATGAC-TGTGCAT-CCGT
510 GAAATATGAAGATGTGCCTAAACCCA-CCTACC-ACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * * *
872274 CT-T-TAGTCGTG-GTAGTGCCCTCCGACGCCCG--CGATCGGTTTCGTCCAGTTGGCTGAGGCA
573 CTCTCTGGCCG-GCGTAGTGCCCGCC--CGCCCGCCCGCTC-GTTTCGT-CGGTTGGCTTAGGCA
** * * * * *
872334 TAC-GAG-TCATTCGCCCAGTCTAAGATTGGATCAGA-CG-GAGCTGCGGCA-CAGGATCGACAG
633 TACGGAGTTCATT--CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAG
* * * * * *
872394 CA-TCAGAGGGGGACCCAGCCTCGATCCCAGAC-TG---ATCCTGCCCCTATGGCCCG-TTGAGC
696 CACGCAGAGGGGGACCC-G-GTCGATCCCTGACTTGCACATCCCGCCCCTCTGG-CCGACTGAGC
* *
872453 GCCCGCACGC-CTCGTTCGT-GGTTGAC-TAAGCATACGGAGTTCATTCCCAGTCTAAGCATACG
758 GCCCGCACGCTCT-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-
* * * **
872515 GAGTTCACCAATGAATCGATAGGATCGGAGGAGGGTTCAGGATAGCATTGTGCTGGGCTCGGGCA
819 -AG---A-C-------C----GGA-C---CGAGGGTT-ACGACAGCA-CATGCTGGGCTCGGGCA
*
872580 TGTGCTGGT-CA
862 TGTGCTGGTGCC
* * *
872591 GCATTTTTGCTTCG-C-GCGGCAACATCGTCGGAAGC-TCGTC-GAGAAAC-GA-CGGC-G--TT
1 GCATTTTT-CTTCGCCAG-GGCACCATCGCCGG-AGCATCGTCGGAGAACCTGACCGGCGGCATT
* ** * ** * *
872647 ----TTCTG-C-ATC--GTTGGTC--ATGGT-TGCAAACAAATGA-GTGCGATGGGTGCTGGTAC
63 GGGGTTCCGACGATCAGGGGGGCCGGGGGGTGTGC--GCACATGATGTGCGATGGGTGCTGGTAC
*
872700 -TGG-CCTTATATTGGCCCCCTAT-CCTCAGTCAAACCTTGAGAACTCACACCCCCTTAAAGGAG
126 TTGGCCCTTATATTGGCCCCCTATCCCTCA-TCAAACCTCGAGAACTCACACCCCCTTAAA-GAG
* * *
872762 AATTT-AGATTTT-TAGG-TTGCTG-CAGTAGCCATATAAAGTGTCTGAAAT-GGGACAATTTTT
189 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT-TAAAGTGTCTGAAATGGGGACACTTTTT
* *
872822 TC-AAT-GTCA-AAAATCTTCTACACTT-GAGTTTTTAGACTGAATA--TTTGTGCATGCCAAGA
253 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG-CTGAATATTTTTGTGCATGCCAACA
* * *
872881 AAAATACAA-GATCACGTCTACCAA-TAATTGGGGACAAAAATCCTTTCGATAAAAAATTTT-AA
317 AAAATACAAGGATCACGTCTACCAAGT--TTGGGGCCAAAACTCCTTCCG--AAAAAATTTTAAA
* *
872943 AAATCAC-GAACCAGTAAAAAGTTTC-AAAATCATG-AAAATGAGAAAAC-AGTCGGCTTACCAT
378 AAATC-CGGAACC-GTAAAAAGTTTCAAAAATCATGAAAAAT-AGAAAACGAGTCGTCTTGCCAT
* * *
873004 GTAGGAACTTC-CGTGAAGGCTTAAGTGACCACATGT-TGAA-TTATAAGCCATAAAAATGGCAT
440 G-A--AACTTCACGTGAAGGCTTAAGGGACCA-TTGTATGAATTTACAAGCCATAAAAATGGCAT
***
873066 TGGCACACA-AAATATGAAGATGTGCCT-AA---A-C--CCA-CCTATCGATCCACGGCTTGCGC
501 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
873122 ATCCCGTCTCTCTGGTCGGCGTAATGCCCGCCGACCCGCCCACCTGCCCGCCCGTTCGTTTCGTC
566 ATCCCGTCTCTCTGGCCGGCGTAGTG--C-CCG-CCCG--C-CC-GCCCG--C--TCGTTTCGTC
* * * * **
873187 GGTTGGCTTAGGCATATGGACTTCATTGCAAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAG
619 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAG
* * * * * *
873252 CAGGATCGACAGCACGTAGATGGGGACCCAGTCGATCCCTGGCTTGCGCATCCCTCCCCTCTGGC
684 CAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCTGACTTGCACATCCCGCCCCTCTGGC
873317 CG
749 CG
873319 GGGGGTGTGT
Statistics
Matches: 12909, Mismatches: 1563, Indels: 910
0.84 0.10 0.06
Matches are distributed among these distances:
852 6 0.00
853 8 0.00
854 8 0.00
855 6 0.00
856 2 0.00
857 10 0.00
858 1 0.00
859 3 0.00
860 2 0.00
861 28 0.00
862 77 0.01
863 228 0.02
864 61 0.00
865 76 0.01
866 483 0.04
867 50 0.00
868 18 0.00
869 50 0.00
870 168 0.01
871 512 0.04
872 537 0.04
873 1186 0.09
874 826 0.06
875 17 0.00
876 28 0.00
877 354 0.03
878 504 0.04
879 31 0.00
880 88 0.01
881 456 0.04
882 20 0.00
883 98 0.01
884 16 0.00
885 472 0.04
886 21 0.00
887 37 0.00
888 24 0.00
889 537 0.04
890 13 0.00
891 7 0.00
892 16 0.00
893 182 0.01
894 5 0.00
895 50 0.00
896 788 0.06
897 1977 0.15
898 842 0.07
899 697 0.05
900 329 0.03
901 574 0.04
902 305 0.02
904 1 0.00
905 2 0.00
906 4 0.00
907 2 0.00
908 3 0.00
910 1 0.00
912 1 0.00
916 2 0.00
917 1 0.00
918 3 0.00
919 55 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (873 bp):
GCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
GTTCCGACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAA
GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCGGAACCG
TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
GTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGT
CGATCCCTGACTTGCACATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCTTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAC
ATGCTGGGCTCGGGCATGTGCTGGTGCC
Found at i:863605 original size:26 final size:26
Alignment explanation
Indices: 863575--863625 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
863565 TTAACTTAGG
863575 CATACAGAGTTCATTCCCAGTCTAAA
1 CATACAGAGTTCATTCCCAGTCTAAA
*
863601 CATACGGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
863626 GATCAGATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAA
Found at i:865378 original size:26 final size:26
Alignment explanation
Indices: 865348--865398 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
865338 TTAACTTAGG
*
865348 CATACAGAGTTCATTCCGAGTCTAAA
1 CATACAGAGTTCATTCCCAGTCTAAA
*
865374 CATACGGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
865399 GATCAGACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAA
Found at i:867145 original size:26 final size:26
Alignment explanation
Indices: 867115--867165 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
867105 TTAACTTAGG
867115 CATACAGAGTTCATTCCCAGTCTAAA
1 CATACAGAGTTCATTCCCAGTCTAAA
*
867141 CATACGGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
867166 GATCAGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAA
Found at i:868945 original size:26 final size:26
Alignment explanation
Indices: 868909--868961 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
868899 GTTAACTTAG
868909 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
868935 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
868961 G
1 G
868962 ATCAAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:869836 original size:26 final size:26
Alignment explanation
Indices: 869807--869862 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
869797 TGGGTTGACT
* *
869807 TAAGCATACGGAGTTCATTCCCAGGC
1 TAAGCATACGAAGATCATTCCCAGGC
*
869833 TAAGCATACGAAGATCATTCCCAGTC
1 TAAGCATACGAAGATCATTCCCAGGC
869859 TAAG
1 TAAG
869863 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (26 bp):
TAAGCATACGAAGATCATTCCCAGGC
Found at i:871637 original size:26 final size:26
Alignment explanation
Indices: 871601--871653 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
871591 GTTGACTTAG
871601 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
871627 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
871653 G
1 G
871654 AACATATCCG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:873971 original size:666 final size:651
Alignment explanation
Indices: 872677--873971 Score: 1593
Period size: 666 Copynumber: 2.0 Consensus size: 651
872667 TTGCAAACAA
* **
872677 ATGAGTGCGATGGGTGCTGGTACTGGCCTTATATTGGCCCCCTATCCTCAGTCAAACCTTGAGAA
1 ATGAGTGCGATGGGTGCTGGTACTGGCCTTATATTGGCCCCCTACCCTCAGTCAAACCTCAAGAA
*
872742 CTCACACCCCCTTAAAGGAGAATTTAGATTTTTAGGTTGCTGCAGTAGCCATATAAAGTGTCTGA
66 CTCACACCCCCTTAAAGGAGAATTTAGATTTTAAGGTTGCTGCAGTAGCCATATAAAGTGTCTGA
*
872807 AATGGGACAATTTTTTCAATGTCAAAAATCTTCTACACTTGAGTTTTTAGACTGAATATTTGTGC
131 AATGGGACAATTTTTTCAATGTCAAAAATCTTCTACACTTAAGTTTTTAGACTGAATATTTGTGC
* * *
872872 ATGCCAAGAAAAATACAAGATCACGTCTACCAATAATTGGGGACAAAAATCCTTTCGATAAAAAA
196 ATGCCAACAAAAATACAAGATCACGTCTACCAAT-ATTGGGAACAAAAATCCTTTCCATAAAAAA
*
872937 TTTTAAAAATCACGAACCAGTAAAAAGTTTCAAAATCATGAAAATGAGAAAACAGTCGGCTTACC
260 TTTTAAAAATCACGAACCAGCAAAAAGTTTCAAAATCATGAAAATGAGAAAACAGTCGGCTTACC
* * *
873002 ATGTAGGAACTTCCGTGAAGGCTTAAGTGACCACATGTTGAATTATAAGCCATAAAAATGGCATT
325 ATGTA-GAACTTCCGTGAAGGCCTAAGGGACCACATGTTGAATTACAAGCCATAAAAATGGCATT
* **
873067 GGCACACAAAATATGAAGATGTGCCTAAACCCACCTATCGATCCACGGCTTGCGCATCCCGTCTC
389 GGCACACAAAATATAAAGATAAGCCTAAACCCACCTATCGATCCACGGCTTGCGCATCCCGTCTC
* *
873132 TCTGGTCGGCGTAATGCCCGCCGACCCGCCCACCTGCCCGCCCGTTCGTTTCGTCGGTTGGCTTA
454 TCTGGCCAGCGTAATG-CCGCCGACCCGCCCACCTGCCCGCCC--TCGTTTCGTCGGTTGGCTTA
* * * * * *
873197 GGCATATGGACTTCATTGCAAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
516 GGCATACGAACTTCATTCCAAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
873262 AGCACGTAGATGGGGACCCAGTCGATCCCTGGCTTGCGCATCCCTCCCCTCTGGCCGGGGGGTGT
581 AGCACGCAGAGGGGGACCCAGCCGATCCCCGACTTGCGCATCCCTCCCCTCTGGCCGGGGGGTGT
873327 GTGCAT
646 GTGCAT
873333 ATGACGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTACCCCTCA-TCAAACCTCA
1 ATGA-GTGCGATGGGTGCTGGTAC-TGG-CCTTATATTGGCCCCCTA-CCCTCAGTCAAACCTCA
* *
873397 AGAACTCACACCCCCTTAAA-GAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCCAT-TAAA
62 AGAACTCACACCCCCTTAAAGGAGAATTT-AGATTTT--AAGGTTGCTGC-AGTAGCCATATAAA
* * * *
873460 GTGTCTGACATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAATTTTTTAG-C
123 GTGTCTGAAAT-GGGACAATTTTTTC-AAT-GTCA-AAAATCTTCTACACTT-AAGTTTTTAGAC
* * * *
873524 TGAATTTTTTTGTGCATGCCAACAAAAATACTAGGATCACGTCTACCAGT-TTGGGAACAAAACT
183 TGAA--TATTTGTGCATGCCAACAAAAATAC-AAGATCACGTCTACCAATATTGGGAACAAAAAT
* *
873588 CC-TTCCA-AAAAAATTTTAAAAAATC-CTGAA-CGGCAAAAAGTTTCAAAAATCGTGAAAAAT-
245 CCTTTCCATAAAAAATTTT-AAAAATCAC-GAACCAGCAAAAAGTTTC-AAAATCATG-AAAATG
* * *
873648 AGAAAACGAGTCGTCTTGCCATG-A-AACTTCACGTGAAGGCCTAAGGGACCA-TTGTATGAATT
306 AGAAAAC-AGTCGGCTTACCATGTAGAACTTC-CGTGAAGGCCTAAGGGACCACATGT-TGAA-T
****
873710 TACAAGCCATAAAAATGGCATTGGCATGTGGAAATATAAAGATAAGCCTAAACCCACCTACCACC
367 TACAAGCCATAAAAATGGCATTGGCA-CACAAAATATAAAGATAAGCCT-AA---A-C--CCA-C
* * **
873775 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGTGTAGTG-C-CC-ACCCGCCCGTCT
423 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAATGCCGCCGACCCGCCCACCT
* * *
873837 GTCCG-CC-CGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCA
488 GCCCGCCCTCGTTTCGTCGGTTGGCTTAGGCATACGAACTTCATTCCAAGTCTAAGATCAAACCA
* *
873900 GACCGAGGGTTGCGGTAGCAGGATTGACAGCACGCAGAGGGGGACCC-GACCGATCCCCGACTTG
553 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCAG-CCGATCCCCGACTTG
*
873964 GGCATCCC
617 CGCATCCC
873972 GCCCTTCAGG
Statistics
Matches: 548, Mismatches: 57, Indels: 58
0.83 0.09 0.09
Matches are distributed among these distances:
656 4 0.01
657 19 0.03
658 10 0.02
659 53 0.10
660 5 0.01
661 23 0.04
662 22 0.04
663 12 0.02
664 49 0.09
665 77 0.14
666 165 0.30
667 25 0.05
668 16 0.03
669 2 0.00
670 15 0.03
671 3 0.01
672 1 0.00
673 3 0.01
674 44 0.08
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (651 bp):
ATGAGTGCGATGGGTGCTGGTACTGGCCTTATATTGGCCCCCTACCCTCAGTCAAACCTCAAGAA
CTCACACCCCCTTAAAGGAGAATTTAGATTTTAAGGTTGCTGCAGTAGCCATATAAAGTGTCTGA
AATGGGACAATTTTTTCAATGTCAAAAATCTTCTACACTTAAGTTTTTAGACTGAATATTTGTGC
ATGCCAACAAAAATACAAGATCACGTCTACCAATATTGGGAACAAAAATCCTTTCCATAAAAAAT
TTTAAAAATCACGAACCAGCAAAAAGTTTCAAAATCATGAAAATGAGAAAACAGTCGGCTTACCA
TGTAGAACTTCCGTGAAGGCCTAAGGGACCACATGTTGAATTACAAGCCATAAAAATGGCATTGG
CACACAAAATATAAAGATAAGCCTAAACCCACCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCAGCGTAATGCCGCCGACCCGCCCACCTGCCCGCCCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGAACTTCATTCCAAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCAC
GCAGAGGGGGACCCAGCCGATCCCCGACTTGCGCATCCCTCCCCTCTGGCCGGGGGGTGTGTGCA
T
Found at i:874059 original size:26 final size:26
Alignment explanation
Indices: 874023--874075 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
874013 GTTGACTTAG
*
874023 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
874049 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
874075 G
1 G
874076 ATCGGATCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:874955 original size:26 final size:26
Alignment explanation
Indices: 874926--874978 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
874916 GTTGACTTAG
874926 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
874952 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
874978 G
1 G
874979 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:875468 original size:26 final size:26
Alignment explanation
Indices: 875432--875484 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
875422 GTTAACTTAG
*
875432 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
875458 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
875484 G
1 G
875485 ATTAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:877069 original size:26 final size:26
Alignment explanation
Indices: 877033--877105 Score: 146
Period size: 26 Copynumber: 2.8 Consensus size: 26
877023 TATAGGATAC
877033 GGAGTTCATTCCCAGTCTAAGCATAT
1 GGAGTTCATTCCCAGTCTAAGCATAT
877059 GGAGTTCATTCCCAGTCTAAGCATAT
1 GGAGTTCATTCCCAGTCTAAGCATAT
877085 GGAGTTCATTCCCAGTCTAAG
1 GGAGTTCATTCCCAGTCTAAG
877106 ATCGGACCGG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GGAGTTCATTCCCAGTCTAAGCATAT
Found at i:877962 original size:26 final size:26
Alignment explanation
Indices: 877926--877976 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
877916 TTACTTAGGC
877926 ATACGGAGTTCACTCCCAGTCTAAGG
1 ATACGGAGTTCACTCCCAGTCTAAGG
*
877952 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCACTCCCAGTCTAAG
877977 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCACTCCCAGTCTAAGG
Found at i:879613 original size:25 final size:26
Alignment explanation
Indices: 879576--879627 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
879566 GTTGACTTAG
* *
879576 GCATATGAGGTTCATT-CCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
879601 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
879627 G
1 G
879628 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:881974 original size:158 final size:159
Alignment explanation
Indices: 881620--881974 Score: 491
Period size: 158 Copynumber: 2.2 Consensus size: 159
881610 TCGTTTCCTC
* * * * * *
881620 GGTTGGCTTAGGCATATGGACTTCATTCCCAGTCTCAGATCAGATCGAACTGAGGGTTGCAGCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTACAGCAG
* *
881685 CAGGATCGGTAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCTCGCCCCTCTGGC
66 CAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGC
* ** * *
881750 CAGCTGAGCGCCCGCATGCTCGTTTTATG
131 CAGCTGAACGCCCGCACACTCATTTCATG
* *
881779 GGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAACTGA-GGTTACGGCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTACAGCAG
*
881843 TAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGAG-TTGCT-CATCCCGCCCCTCTG
66 CAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCG-GCTTG-TGCATCCCGCCCCTCTG
* *
881906 GCCGGCTGAACGCCCGCACACTCATTTCGTG
129 GCCAGCTGAACGCCCGCACACTCATTTCATG
* *
881937 GGTTGACTTAGGGATACGGAGTTCATTCCCAGCCTAAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
881975 CATACGGAGT
Statistics
Matches: 173, Mismatches: 21, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
158 124 0.72
159 49 0.28
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (159 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTACAGCAG
CAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGC
CAGCTGAACGCCCGCACACTCATTTCATG
Found at i:881986 original size:26 final size:26
Alignment explanation
Indices: 881950--882000 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
881940 TGACTTAGGG
881950 ATACGGAGTTCATTCCCAGCCTAAGC
1 ATACGGAGTTCATTCCCAGCCTAAGC
*
881976 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGCCTAAG
882001 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGCCTAAGC
Found at i:882863 original size:26 final size:26
Alignment explanation
Indices: 882827--882877 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
882817 GTTGACTTAG
*
882827 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
882853 GCATACGGAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATTCCCAATCTA
882878 GGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:884626 original size:26 final size:26
Alignment explanation
Indices: 884591--884642 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
884581 TTGACTTAGC
* *
884591 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
884617 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
884643 ATCGGATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:885135 original size:894 final size:890
Alignment explanation
Indices: 881767--891564 Score: 10056
Period size: 901 Copynumber: 11.0 Consensus size: 890
881757 GCGCCCGCAT
* * * * *
881767 GCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACC-GAACTG
1 GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCAG-ACAG
* * * ** * *
881831 A-GGTTACGGCAGTAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGAG-TTGCTCAT
64 AGGGTTGCAGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCCCG-GCTTGCGCAT
* * * * * * *
881894 CCCGCCCCTCTGGCCGGCTGAACGCCCGCACACTCATTTCGTGGGTTGACTTAGGGATACGGAGT
128 CCCGCCCCTCTGGCCGGTTGAGCACCCGCACGCT--GTTCATGGGTTGACTTA-GCATACGGAGT
* * * * *
881959 TCATTCCCAGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTACG
190 TCATT-CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCG
* * * **
882024 GCATCACATGCTGGGCTCAGGCATGTGCTGTTG-CGCATTTTTCTTCGTCGGGG--CA-C-CA--
254 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCCCACCGCATC
* * * * *
882082 -TC-----ACC-G---GACGACATTGGGGTTCCGATGATCGGGGGAGCCGGGGGTGTGTACGCAC
319 GTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCAC
* *
882137 ATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
384 ATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGA
* * * * *
882202 GAACTCACACTCCCTTAAAGAGCATTTGATATTTTATAGCTTTGCTGCCAGTAGCTATTAAAGTG
448 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * * *
882267 TTTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTATACACTTCAATTTTTTAGTTGAA
513 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAA
* *
882332 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTT-GGG-CAAAAACTCCT
578 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA-TCCT
* * * * *
882395 TCC-AAAAAAATTTAAAGAAACCCCGAACCGCAAAAAGTTTCCAAAATCGTGAAATATAGAAAAT
642 TCCGAAAAAATTTTAAA-AAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* * * *
882459 GAGTCATCTTGCCATGAAACTTCACGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCGAT
706 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCAT
* *
882524 AAAAATGGCATTGGCA-AGCAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATC
771 AAAAATGGCATTGGCACA-CACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * * * * *
882588 TACGGCTTACGCATCCCGTCTCTTTGGCCGACGTAATGGCTGCCCGCCCGCC-CACC
835 CACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCTCCGC-CC
* ** * * * * *
882644 TGCTCGTTTCGTCGGTTGGCTTAGGTGTACGGAGTTCATTCCTAGTCTGAGGTCAGATCGGATC-
1 -GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCAGA-CA
* * * * * ** *
882708 GAGGGTTGCGGCAGCAGGATCGGCAGTACGCAGAGGGGGACACGGTCGATCCCCAGCTT-CTGCA
63 GAGGGTTGCAGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGC-GCA
* * * * *
882772 TCCTGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAG
127 TCCCGCCCCTCTGGCCGGTTGAGCACCCGCACGC-TG-TTCATGGGTTGACTTA-GCATACGGAG
* * * *
882837 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAGGATCGGAC-CGAACCGAGGGTTG
189 TTCATT-CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAG-ACCGAGGGTTG
* * * * * ** ** *
882901 CGACAGCACATGTTGGACTCGGGCATGTGCTGGTGTCGCTTTTTTCTTCGTCTAGG--CA-C-TA
252 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCCCACCGCA
* * * * *
882962 TCGTCGAAGATCCTGACCAACGACATTGGGGTTCGGACGATCGGGGGGGCC-GGGGGGTGTGCGC
317 TCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGC
* *
883026 ACATGATGTACGATGGGTGCTGGTACTTGGCCCTGATGTTGGCCCCCTATCCCTCATCAAACCTC
382 ACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTC
*
883091 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAA
446 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
883156 TGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTACCTG
511 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTG
* * * * *
883221 AATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGAGGTCAAAACTCC
576 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCC
* *
883286 TTTCG-AAAAATTTTAAAAAATCTCGAACC-CGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
641 TTCCGAAAAAATTTTAAAAAATCCCGAACCGC-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
* *
883349 CAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
705 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCA
* * * * *
883414 -CAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCGTAAACCCACCTACCACCTTATCGATC
770 TAAAAATGGCATTGGCACACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * *
883478 CACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCT---CCT
835 CACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCTCCGCCC
* * * *** *
883531 GCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTCGATTGGACTGA
1 GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAACCAGACAGA
* ** * **
883596 GGGTTGC-GATAGCAGGATCGACAGCATGTGGAGGGGGACCC-AGCCGATCCTCGGCTTATGCAT
65 GGGTTGCAG-CAGCAGGATCGACAGCATGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCAT
* * ** * * *
883659 CCCGCCCTTCTGGCCGGCTGAGTGCTCGCACGC---TC----G-T---TT--CGT--GG-GTTGA
128 CCCGCCCCTCTGGCCGGTTGAGCACCCGCACGCTGTTCATGGGTTGACTTAGCATACGGAGTTCA
* * * *
883708 ---C--T-TAGGCATACAGAGTTCATTCACAGTCTAAGATCGGACTGGACTGAGGGTTGCGGCAG
193 TTCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAG
* * * **
883767 CACGTGCTGGGTTCGGGCATGTGCTGGTGTCGCATTTTTCTTTGCCGGGGCTCCATCACCGGAGC
258 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG--CC--CACC---GC
* ** * * * *
883832 ATCGTCGGAGAACCTGGCCGGTGGCATTGGGGTTTCGGCGATCGGGGGAGCCGGGGGGGGGTGCG
316 ATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCG
* * * *
883897 CACATGATGTGCGATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCTATCCCTAATCAAACCTT
381 CACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTC
* *
883962 GAGAACTCACACCCCGTTAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
446 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*** * *
884027 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGGGTTTTCAGCTA
511 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTG
* *
884092 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAACTTCGGGGCCAAAAATCC
576 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCC
* ** * **
884157 TTCTGAAAAAATTTTAAAAAATCTGGAACCACAAAAAGTTTCAAAAATTATGAAAAATAGAAAAC
641 TTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
884222 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCAT
706 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCAT
884287 AAAAATGGCATTGGCACACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
771 AAAAATGGCATTGGCACACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* *
884352 ACGGCTTGTGCATCCCGTCTCTCTGGCTGGCATAGTGCCCGCCCGCCCTCCTGCCC
836 ACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCTCC-GCCC
* *
884408 ACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCCTTCCCAGTCTAAGATCAATCCAGATC-G
1 GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAA-CCAGA-CAG
* * ** * * * *
884472 AGGGTTACAACAATAGGATCGATAGGCATGCAGAGGGGGACCCGACTGATCCCCAGCTTGTGCAT
64 AGGGTTGCAGCAGCAGGATCGACA-GCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
* * *
884537 CCCGCCCCTCTGGCCGGCTGACCGCCCGCACGCTTGTTCATGGGTTGACTTAGCCATACGGAGTT
128 CCCGCCCCTCTGGCCGGTTGAGCACCCGCACGC-TGTTCATGGGTTGACTTAG-CATACGGAGTT
*
884602 CATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGA-TCAAACCGAGGGTTGCG
191 CATTCC-AGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACT-AGACCGAGGGTTGCG
* * **
884666 ACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGG-CCA-C-CATC
254 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCCCACCGCATC
*
884728 GTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCAC
319 GTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCAC
* *
884793 ATGATGTATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCTCTCATCAAACCTCGA
384 ATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCCCTCATCAAACCTCGA
** *
884858 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAATTTTGCTGCCAGTAGCCATTAAAATG
448 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
884923 TCTGTAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAA
513 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAA
* * * * * *
884988 TTTTTTTTTGGATGCCATCAAAAATACAAGGATCACATCTGCCAAGTTTGGGGCCAAAACTCCTT
578 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT
* *
885053 CCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
643 CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* * *
885118 GTCATCTTGCGATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGTATTTACAAGCCATAA
708 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAA
* * *
885183 AAATGGCATTGGCACGCACAAATATGAAGATGTGCCTAAGCCCACCTACCACCTTATCGATCCAC
773 AAATGGCATTGGCACACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
885248 GGCTTGCGCATCCCGTCTCTCTGG-TCGACGTAGTGCCCGCCCCGCCCGCC-CGCC
838 GGCTTGCGCATCCCGTCTCTCTGGCT-GGCGTAGTGCCCG-CCCGCCCTCCGC-CC
* *
885302 GCTCGTTTCATCGGTTGGCTTAGGTATACAGGAGTTCATTCCCAGTCTAAGATTAGACCAGACTA
1 GCTCGTTTCATCGGTTGGCTTAGGCATAC-GGAGTTCATTCCCAGTCTAAGATCA-ACCAGAC-A
* *
885367 -AGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCAT
63 GAGGGTTGCAGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
* *
885431 CCCGCCCCTTTGGCCGGTTGAGCACCCGCA--C-GTTCAT---TT--C---G--T--GG-GTTGA
128 CCCGCCCCTCTGGCCGGTTGAGCACCCGCACGCTGTTCATGGGTTGACTTAGCATACGGAGTTCA
* * * *
885480 ---C--T-TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAG
193 TTCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAG
* * * *
885539 CACATACTGGGCTCAGGCATGTGTTGGTACCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGC
258 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGC-CCA-C--C---GC
* * * * * * *
885604 ATCGTCAGAGAACCTGACTGGCGACATTGGGGTTCCGGCGAT-TGGGGGGCCGGGGGGGTGTGCA
316 ATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCG
* *
885668 CACATGATGTGCGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCAT-AAAGCC
381 CACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAA-CC
* * * * *
885732 TTGAGAATTGACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAATAGCCATTAA
444 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
**
885797 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTGGTTTTTAGC
509 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGC
* *
885862 TGAATTTTTTTGTGCATGCGAACAAAAATACAAGGATCACGTCTACCAA-TGTTGGGGCTAAAAA
574 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT-TTGGGGCCAAAAA
* * * ** ** *
885926 TCCTTCCAAAAAAATTTTCAAAAATCCCGAACCGCAAAAGGTTTTGAAAATCGTGAAGGACAGAA
638 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* * * *
885991 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCGTTGTATGAATTTAGAAGC
703 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGC
* * *
886056 AATAAAAATGGCATCGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
768 CATAAAAATGGCATTGGCACACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * **
886121 TCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTTGCCCGCCCGTCCGCCC
833 TCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCC-TCCGCCC
* * * *
886180 GCTTGTTTTATCGGTTGGCTTAGGCATACGGCGTTCATTCCCAGTCTATGATCAAACCAGACAGA
1 GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AACCAGACAGA
* * *
886245 GGGTTGCAGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCC
65 GGGTTGCAGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC
* * * *
886310 CGCTCCTCTGGCCGGTTGAGCACCTGTACGCTCGTTTCATGGGTTGACTTAGGCATACGTAGTTC
130 CGCCCCTCTGGCCGGTTGAGCACCCGCACGCT-G-TTCATGGGTTGACTTA-GCATACGGAGTTC
* * * * *
886375 ATTCCCAGTCTAAGCATACGGAGTTCTTTCCCAGTCTAAGATCAGACCAGGCCGAGGGTTGCGGC
192 ATT-CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGC
** * * **
886440 AGCACATGCCAGGCTAGGGCATGTGCTGGTGCCGCATTTTTCCTCAATGGGGCACCATCGCCGGA
256 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGC-CCA---CC---
* * ** *
886505 GCATCGTCGGAGAGCCTGACCGACGGCATTAGGGTTCAAACAATC-GGGGGGCC--GGGGGTGTG
314 GCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTG
886567 CGCACATGATGTGA-GATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAA
379 CGCACATGATGT-ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATCAAA
*
886631 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATT
442 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
886696 AAAGTGTCTAAAATGGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACACTTAAAG-TTTT
507 AAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTT
* *
886760 AGCTGAA-ATTTTTCTGCATGCCCAACAAAAATACAAGGATCACGTCTACCAAG-TTGGGGCC-A
571 AGCTGAATTTTTTTGTGCATG-CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * *
886822 AACT-CTAT-C--AAAAATTTTAAAAAATCGCCGAAAC-CACACAAGTTTCAAAAA-CGTG-AAA
635 AAATCCT-TCCGAAAAAATTTTAAAAAATC-CCGAACCGCA-AAAAGTTTCAAAAATCGTGAAAA
* *
886880 CTAGAAAAACGAGTCGTCTTGCCATGAAA-TTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
697 ATAG-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATT
* * ** * * *
886944 GAAAAGCCATAAAAATCTCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCATACTACCTG
761 TACAAGCCATAAAAATGGCATTGGCACACACAAATATGAAGATGTGCCTAAACCCA-CCTACC-A
* * * * * ** **
887009 CCCTATCGACCCACAGC-TG-GCAT--CG---GT-TGGCTTAGGCATA-TAG--AG--TTCATTC
824 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC-T-GGCGTAGT-GCCCGCCCGCCCTC
*
887061 CAG-TC
886 C-GCCC
** * * * *
887066 G-AAG-ATCAAAC---TGG---A--C-T--GG-GTTGCAGT---AG-C-AAGATC-AGCAGCACG
1 GCTCGTTTC-ATCGGTTGGCTTAGGCATACGGAGTT-CATTCCCAGTCTAAGATCAACCAG-A--
* * * ** * * *** ** *
887111 CAGAGGG--GGACCTGGTC-GG-TCCCCGGCTTGC----GGCTTCCCG-CCCCTCCAGCCGAC-T
61 CAGAGGGTTGCAGC-AG-CAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCC--CCGGCTT
* * * * * ****
887166 GAGC-GCCCG---C-AT-GCTCGTTTCGTG-GGTTG-A--C--TT-A------G-----GCATAC
122 GCGCATCCCGCCCCTCTGGC-CGGTT-GAGCACCCGCACGCTGTTCATGGGTTGACTTAGCATAC
** * *
887207 GGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGA-TCAGATCGAGG
185 GGAGTTCATT-CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACT-AGACCGAGG
* * * * * ** *
887271 GTTGCGGCAGCACATGCTAGGCTTGGGCATATGCTGGTACCGCATATTTCTTCGTCGGGCCACCA
248 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGC-CCA
* * * *
887336 TCGTCGGAGCATCGTCGGAGAACCTAACC-AGCGACATTGAGGTTCCGGCGATC-GGGGGGCCGG
312 -C--C---GCATCGTCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
* * * *
887399 GGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGAACTTGGCTCTTATATTGGCCCCCTATCCC
370 GGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCC
* * *
887464 TCATCAAACCTGGAGAACTTACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAG
434 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
887528 TAGCCATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCG
499 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
* * *
887593 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAATGATCATGTCTACCATGTTTGG
564 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * ** ** *
887658 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCTAA-C-CTTAAAGTTTTGAAAATCATGA
629 GGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGA
887721 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GTGACCATTGTATGA
694 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACG-GACCATTGTATGA
** *
887785 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA-GAAGATGTGCCTAAACCCACCTACC
758 ATTTACAAGCCATAAAAATGGCATTGGCACACACAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * *
887849 ACCCTATCGATCGACGGCTTGCGCATCCCATCTCTCAGGCCGACGTAGTGCCCGTCCAC-CCGCT
823 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCG-CC-CGCC-CT
887913 CGCCCGCCC
885 ---CCGCCC
* * * * **
887922 GCTTGTTTC-TAAGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCT
1 GCTCGTTTCAT-CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCAGACAG
* * ** *** * * * *
887986 AGGGTTGCAACAGCAGGATTGGTAGCACAAAGAGGGGGACCCGATCAATCACCGGCTTACGCATC
64 AGGGTTGCAGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
* * ** * *
888051 CCGCCCCTCTGGTCGGTTAAGTGCCCGCACGGTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
129 CCGCCCCTCTGGCCGGTTGAGCACCCGCACGCT-G-TTCATGGGTTGACTTA-GCATACGGAGTT
* * * * *
888116 CATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGACCAAGGGTTACG
191 CATT-CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACT-AGACCGAGGGTTGCG
* * **
888180 GCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCG
254 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGC-CCA-C--C-
* ** * * * * * *
888245 GAGCTTCACCGGAGAACCTGACCGATGGCATTAGGGTTTCGGCGCTC-GGGGGTCCGGGGGGGTG
314 --GCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTG
* * * * *
888309 TGCGCACATGATGTGCGATGTGTGCTAGTAGTTGGCCCTTATATTGGCCCTGTATCCCTCATCAA
377 TGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCCCTCATCAA
* * *
888374 ACCTCGAGAACTCACACCCCTTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTAT
441 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * * *
888439 TAAAGTATCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTT
506 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTT
* * *
888504 AGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGTGGCCAAA
571 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * **
888569 ACTCATTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAG
636 AATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAG
* * *
888634 AAAACGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAA
701 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAA
* *** * * *
888699 GCCATGAAAATGGCATTGGCATGTAAAAATATAAAGATGTGCCTAAACCCACCTACCACCTTATC
766 GCCATAAAAATGGCATTGGCACACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * * *
888764 GATCCA-GAGCTTGCACATCTCGTCTCTCTGGCAGACGTAGTGCCTGCCCGCCCGCCCGCCC
831 GATCCACG-GCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCC-TCCGCCC
* * *
888825 GCTCGTTTCCTCGGTTGGCTTAGGCATACCGAGTTCATTCCCAGTCTAAGATCAGACCA-AAATG
1 GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCAGACA-G
* * * * * * * **
888889 AGGGTTGCGGTAGCAGGATC-AGTAGCACGCAGAGGGGGACCTGGCCGATCCTCGGCTTATGCAT
64 AGGGTTGCAGCAGCAGGATCGA-CAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
** * * * * *
888953 CCCGCCCCTCTGGCCGACTGAGCGCCCACATGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGT
128 CCCGCCCCTCTGGCCGGTTGAGCACCCGCACGC-TG-TTCATGGGTTGACTTA-GCATACGGAGT
* *
889018 TCATTCCCAGACTAAGCATACAGAGTTCATTCCCAGT-TAAGATCGGA-TCAGATCGAGGGTTGC
190 TCATT-CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACT-AGACCGAGGGTTGC
* * * **
889081 GGCAGCACATGCTGGGCTCAGGCATGTGCTAGTGCTGCA-TTTTCTTCGTCGGGGCACCATCACC
253 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG--CC--CACC
** * **
889145 GGAGCATTATCGGAGAACCTGACCGGCGGCATTGGGGTTCC-AGCGATC-GAAGGGCC-GGGGGG
314 ---GCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGG
889207 TGTGCGCACATGATGTGA-GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
375 TGTGCGCACATGATGT-ACGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCAT
* *
889271 CAATCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
438 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
889336 CTTTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
503 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTT
* * *
889401 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCATGTCTACCAAGTTTGAGGC
568 TTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* ** *
889466 CAAAACA-CCTTCCGAAAAAATTTTAAAAAATTCCGAACCATAAAAAGTTTCAAAAATCATGAAA
632 CAAAA-ATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAA
* **
889530 AATAGAAAACGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTATGAATT
696 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATT
* * ** *
889595 TTCATGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACC
761 TACAAGCCATAAAAATGGCATTGGCACACACAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * * * *
889660 CTAACGATCAATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTACCCGCCCGCCCGCCCGCC
826 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCC-TCCGCC
*
889725 T
890 C
* * *
889726 GCTCGTTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCA-
1 GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCAGA-CAG
* * * * * *
889790 AGGGTT-CTGGCAGCAGGATCGGCAGCACT-CAGAGGGGGACCCAATCGATCCCCGACTTGTG-A
64 AGGGTTGC-AGCAGCAGGATCGACAGCA-TGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
* * * * *
889852 TCCCACCCCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAG
127 TCCCGCCCCTCTGGCCGGTTGAGCACCCGCACGCT-G-TTCATGGGTTGACTTA-GCATACGGAG
* * * *
889917 TTCATTGCCAGTCTAAGCATACAGAGTTAATTCCCAGTCTAAGATCAGAC-CGAACCAAGGGTTG
189 TTCATT-CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAG-ACCGAGGGTTG
* * * * **
889981 CGGCAGCACATACTGGGCTCGGACATGTGCTGGTGTCACATTTTTCTTCACTAGGGCACCATCGT
252 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGC-CCA-C--
* * * * *
890046 CGGAGCATCGTC-GAGTACCTGACC-AGCGACATTGGGGTTCTGACGATCGAGGGGGCCGGGAGG
313 C---GCATCGTCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG
* * * * * * **
890109 GTGTTCACATATGATGTGCGATGGGTGCTGGTACGTGGCTCTTATATTGGCCCCCTATCCCTTGT
374 GTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCAT
*
890174 CAAACCTCGAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
438 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
890239 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
503 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTT
* * * * * *
890304 TTTAGCTG-ATTTTTTTATGCACGCCAAAAAAAATACAAGGATCACTTCTACCGAGTTTGGGGGC
568 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
** * * * **
890368 AAATCTCCATCCAAAAAAATTTTAAAAAATCTCGAACCG-AAAAAGCTTTTGAAAATCGTGAAAA
633 AAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG-TTTCAAAAATCGTGAAAA
* * * * *
890432 ATAGAAAATGAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGACTTT
697 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTT
* * ** * *
890497 AAAAGCCATAAAAGTGGCATTGGCATGCAGAAATATGAAGATGTGCCGAAACCCACCTACCACCC
762 ACAAGCCATAAAAATGGCATTGGCACACACAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * * *
890562 TGTCGATGCACGACTTGCGCATCCCATCTCTCTGGCCGGTGTAGTGCCCGCCCACCTGCCCGTCG
827 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCG--C-CC-GCCC-TCC
890627 GCCC
887 GCCC
** * * ** * *
890631 GCTCGTTTTGTCGATTGGCTTAGGTATACAAAGTTCATTCCCAGTCTAAGATTGAACCAGACCGA
1 GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAACCAGACAGA
* ** * ** * * * * *
890696 GGGTGGTGGTAGCAGGATCGACAGCACACAGAAGGGGACCCGACCGATCCCTGGTTTGCGTATCT
65 GGGTTGCAGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC
* * * *** * * * * *
890761 TGCCCTTCTGGTCGACAGATCACCCGTATGCTCGTTCCGTGGGTTGACTTAGGCGTACGGAGTTC
130 CGCCCCTCTGGCCGGTTGAGCACCCGCACGCT-GTT-CATGGGTTGACTTA-GCATACGGAGTTC
* * *
890826 ATTCCCTA-TCTAAGCATACGGAGTTCATTCCCAGACTAAGATCGGA-TCAGACCGAGTGTTGCG
192 ATT-CC-AGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACT-AGACCGAGGGTTGCG
* * * * **
890889 GCAGCACTTGTTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCTAGGGCACCATCGTCG
254 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGC-CCA-C--C-
* * * * * *
890954 GAGCATCGTC-GAGTACCTGACC-AGCGACATTGGGGTTCTGACGATCGAGGGGGCCAGGAGGGT
314 --GCATCGTCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGT
* * * * **
891017 GTTCGCATATGATGTGCGATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCCTATCCCTTGTCA
376 GTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCA
* *
891082 AACCTCGAGAACTCACTCCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCA
440 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
891147 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTT
505 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTT
* * * * * *
891212 TAGCTG-ATTTTTTTATGCACGCCAAAAAAAATACAAGGATTACTTCTACCAAGTTTGGGGGCAA
570 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
** * * * * *
891276 ATCTCCATCCGAAAAAATTTAAAAAAATCTCGAACCGAAAAAAAGTTTTAAAAATCGTGAAAAAT
635 AAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG-CAAAAAGTTTCAAAAATCGTGAAAAAT
* * *
891341 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTAA
699 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTAC
** * *
891406 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCGACCTACCACCCTA
764 AAGCCATAAAAATGGCATTGGCACACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * *
891471 TCGATCCACGGCTTGCGCATCCTGCCTCTCTAG-TGGCGTAGTGCTCGCCCG--C-CCGCCC
829 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCTCCGCCC
* *
891529 G-T--TTT-GTCAGTTGGCTTAGGCATACGGAGTTCATTC
1 GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
891565 ATTCTAGAGA
Statistics
Matches: 7634, Mismatches: 962, Indels: 632
0.83 0.10 0.07
Matches are distributed among these distances:
837 1 0.00
838 1 0.00
839 198 0.03
840 108 0.01
841 111 0.01
842 25 0.00
843 56 0.01
844 73 0.01
845 19 0.00
847 5 0.00
848 2 0.00
849 4 0.00
851 1 0.00
852 3 0.00
853 1 0.00
855 1 0.00
856 5 0.00
857 1 0.00
858 5 0.00
859 7 0.00
860 94 0.01
861 2 0.00
863 11 0.00
864 10 0.00
865 4 0.00
866 3 0.00
867 9 0.00
868 18 0.00
869 105 0.01
870 13 0.00
871 249 0.03
872 173 0.02
873 121 0.02
874 12 0.00
875 4 0.00
876 10 0.00
877 201 0.03
878 609 0.08
879 244 0.03
880 22 0.00
881 3 0.00
882 13 0.00
883 9 0.00
884 3 0.00
885 8 0.00
886 133 0.02
887 9 0.00
888 3 0.00
889 6 0.00
890 112 0.01
891 345 0.05
892 49 0.01
893 113 0.01
894 529 0.07
895 151 0.02
896 62 0.01
897 33 0.00
898 11 0.00
899 9 0.00
900 331 0.04
901 935 0.12
902 146 0.02
903 873 0.11
904 205 0.03
905 114 0.01
906 642 0.08
907 240 0.03
908 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (890 bp):
GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAACCAGACAGAG
GGTTGCAGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
GCCCCTCTGGCCGGTTGAGCACCCGCACGCTGTTCATGGGTTGACTTAGCATACGGAGTTCATTC
CAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCAC
ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCCCACCGCATCGTCGGAG
AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACACACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCTCCGCCC
Found at i:886392 original size:26 final size:26
Alignment explanation
Indices: 886362--886414 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
886352 GTTGACTTAG
*
886362 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
886388 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
886414 G
1 G
886415 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:887230 original size:26 final size:26
Alignment explanation
Indices: 887201--887253 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
887191 GTTGACTTAG
887201 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
887227 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
887253 G
1 G
887254 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:888133 original size:26 final size:26
Alignment explanation
Indices: 888104--888156 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
888094 GTTGACTTAG
888104 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
888130 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
888156 G
1 G
888157 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:890864 original size:26 final size:26
Alignment explanation
Indices: 890816--890865 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
890806 GACTTAGGCG
*
890816 TACGGAGTTCATTCCCTATCTAAGCA
1 TACGGAGTTCATTCCCTAACTAAGCA
890842 TACGGAGTTCATTCCC-AGACTAAG
1 TACGGAGTTCATTCCCTA-ACTAAG
890866 ATCGGATCAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCTAACTAAGCA
Found at i:892398 original size:26 final size:26
Alignment explanation
Indices: 892362--892411 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
892352 GGCTTAGGTG
892362 TACGGAGTTCATTCCCAGTCTAAGGA
1 TACGGAGTTCATTCCCAGTCTAAGGA
892388 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
892412 ATCGAACCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGGA
Found at i:893990 original size:289 final size:288
Alignment explanation
Indices: 893472--894045 Score: 943
Period size: 289 Copynumber: 2.0 Consensus size: 288
893462 ATGCCAACAG
** * *
893472 AAATACAAGGATCACGTCTACCAAATTTGGGGCCAAAAATCCTTCCAAAAAAATTTTGAAAATCT
1 AAATACAAGGATCACGTCTACCAAATTTGGCACCAAAAATCCTTCCAAAAAAATTTTAAAAATCC
*
893537 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCA
66 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
*
893602 CGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAA
131 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAA
* * * *
893667 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTATGGCTTGCACAT-CCTGTCTCTC
196 TATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTACACATACC-GTCTCTC
*
893731 TGCCCGGCGTAGTGCCCACCCGCCCGCAA
260 TGCCCGGCATAGTGCCCACCCGCCCGCAA
* * *
893760 AAATACAAGGATGACGTCTACCAAGTTTGGCACCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
1 AAATACAAGGATCACGTCTACCAAATTTGGCACCAAAAATCCTTCCAAAAAAATTTT-AAAAATC
*
893825 CCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
65 CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
893890 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAA
130 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAA
* * *
893955 ATATGAAGATGTGCCTAAACCAACCTTCCACCCTATTGATCCACGGCTTACGCATACCGTCTCTC
195 ATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTACACATACCGTCTCTC
* *
894020 TGGCCGGCATAGTGCCCGCCCGCCCG
260 TGCCCGGCATAGTGCCCACCCGCCCG
894046 TTCGCCCACT
Statistics
Matches: 264, Mismatches: 20, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
288 52 0.20
289 210 0.80
290 2 0.01
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (288 bp):
AAATACAAGGATCACGTCTACCAAATTTGGCACCAAAAATCCTTCCAAAAAAATTTTAAAAATCC
CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAA
TATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTACACATACCGTCTCTCT
GCCCGGCATAGTGCCCACCCGCCCGCAA
Found at i:894273 original size:26 final size:26
Alignment explanation
Indices: 894243--894295 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
894233 GTTGACTTAG
894243 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
894269 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
894295 G
1 G
894296 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:895177 original size:26 final size:26
Alignment explanation
Indices: 895147--895199 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
895137 GATGACTTAG
895147 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
895173 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
895199 G
1 G
895200 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:899024 original size:26 final size:26
Alignment explanation
Indices: 898995--899047 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
898985 GTTGACTTAG
* *
898995 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
899021 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
899047 G
1 G
899048 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:899935 original size:26 final size:26
Alignment explanation
Indices: 899899--899977 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
899889 GTTGACTTAG
* *
899899 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCGAA
*
899925 GCATACGGAGTTCATTCCCAATCGAA
1 GCATACGGAGTTCATTCCCAGTCGAA
*
899951 GCATACGGAGTTCATTCCCAGTTGAA
1 GCATACGGAGTTCATTCCCAGTCGAA
899977 G
1 G
899978 ATCGGACCAG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCGAA
Found at i:900416 original size:933 final size:909
Alignment explanation
Indices: 897277--907026 Score: 11554
Period size: 904 Copynumber: 10.8 Consensus size: 909
897267 ATTCCCAGTC
* * * * *
897277 TAAGATCGGACCGGACCGAGGGTTACAGTAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGTA
1 TAAGATCGGACC-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
*
897342 TTTTTCTTCACCGGGGCACCA---TC---G--T--CGGAGAACCTGACCGAC-AGCATTGGGGTT
65 TTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACGGAGAACCTGACCGACGA-CATTGGGGTT
* * *
897396 CCGACGATCTGGGGGGCC-GGTGGGTGTGCGCACATGATGTACGATGGGTGCAGGTACTTGGCCC
129 CCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
897460 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGA
193 TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
***
897525 TTTTACAGGTTTGCTGCCAGTAGTTTTTAAAGTGTCTGAAATGGGGACA-TTTTCTTCAAATGGT
258 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT-TTCAAATGGT
* *
897589 GACAAAATCTTGTACACTTCGAG-TTGTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
322 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * ** * *
897653 GATCACGTCTGCCATGTTTGGGGCAAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGC
387 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGC
* * * *
897718 AAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAACTTCACATGAAGG
452 AAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* ** **
897783 CTTAAGGGACCATTGTATGAATTCACAAGCCATAAATTTGGCATTGGCACATAGAAATATGAAGA
517 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* * * * * *
897848 TGTACCTAAACCCACCTAACACCCTATCGATCCAGGGCTTGCACATCCTGCCTCTCTGGCCGGCG
582 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * **
897913 TAGTGCCCACCCGCCCGCCCG--C-TCGTTTCATCGGTTGGCTTAGGCATATAGAGTTCATTCCC
647 TAGTGCCCGCCCGCCCGCCCGCCCGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * * * * *
897975 AGTCTAAGA-CTGGACTGGATTGAGGGTTACGGTAGCAGGATCGACAGCATGCAGAAGGGGACCT
712 AGTCTAAGATC-AGACCGGACTGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACCC
* * * ** * * * * *
898039 AGTTGATCCTCGGCTTACGCATCCCGCTTCTCTGGCCAACTGAGCACCCGTACGCTCGGTTCATG
776 GGTCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTG
* **
898104 GGTTGACTTAGGCATACGGCGTTCATTCCCAGTCTAAGCATACAAAGTTCA-T--TC--C-CAGT
840 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTCAGCTCAGT
898163 C----
905 CTAGT
* * *
898164 TAAGATCGGACCAGACCAAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
1 TAAGATCGGACC-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
*
898229 TTTTTCTTCATCGGGGCACCA---TC---G--T--CGGAGAACCTAACCGACGACATTGGGGTTC
65 TTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACGGAGAACCTGACCGACGACATTGGGGTTC
*
898284 CGACGATCGGGGGGGCC-GGGGGGTGGGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC-
130 CGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
*
898347 -----T------CTATCCTTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
194 TATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* ** * *
898401 TTTACAGGTTTACTGCCAGTAGTTATTAAAGTGTCTGAAATGGGGGCACTTTTTTCGAATGGTCA
259 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
898466 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAATAAAAATAAAAGGA
324 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * * *
898531 TCATGTCTACCACA-TTTGGGACCAAAACTCCTTCTGAAAAAATTTAAAAAAATCTCAAACCGTA
389 TCACGTCTACCA-AGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCA
* *
898595 AAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGC
453 AAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
*
898660 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
518 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
*
898725 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
583 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * * * * * * * **
898790 AGAGCCCGCCCGCTCACCCGCCCGCTCATTTCGTCGATTGGCTCAGGTATACGAAGTTCATTCTT
648 AGTGCCCGCCCGCCCGCCCGCCCG-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * ** * * * *
898855 AGTCTAAGATCCGACCGGACCGAGGGTTGTAGCAGTAGGATCGACAGCATGCAGAGGGGGACTCG
712 AGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACCCG
* * * * * *
898920 GTCAATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGTGCCCACACGCTCGTTTCGTTG
777 GTCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGG
* *
898985 GTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATACAGAGTTCA-T--TC--C-CAGTC
841 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTCAGCTCAGTC
899044 ----
906 TAGT
* *
899044 TAAGATCGGACCGAACCGAGGGTTCCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCA
1 TAAGATCGGACCG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * * * * ** *
899109 TTTTTCTTCGTCGAGGCACCATC-ACAGGAGCATCGTCAGAGAACCTGATCGGTGGCATTGGGGT
65 TTTTTCTTCATCGGGGCACCATCGTC-GGAGCATC-ACGGAGAACCTGACCGACGACATTGGGGT
* * * * * *
899173 TCCGGCGATCGGAGCGGCCGGGGGGGTGTGCGCGCATGATGTGCGATGGGTGTTGGGACTTGGCT
128 TCCGACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
899238 CTTATATTGGCCCCCTATCCCTCATCAAACCT-AGTGAATTCACACCCCCTTAAAGAGCATTTGA
192 CTTATATTGGCCCCCTATCCCTCATCAAACCTCA-AGAACTCACACCCCCTTAAAGAGCATTTGA
* *
899302 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATAGGGACACTTTTTTCAAATGG
256 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * *
899367 TCACAAAATCTTATACACTTCGAGATTTTAGCTGAATTATTTTGTGCTTGCCAACAAAAATACAA
321 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * *
899432 GGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAATTTTTAAAAAATCTCAAACCG
386 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCG
* * *
899497 GAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAG
451 CAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * * *
899562 GCTTAAAGGACCATTGTATAAATTTACAAGCCAAAAAAATGGCATTGGCACGTAGAAATATGAAG
516 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* * * *
899627 GTGTGCCTAAACCCACCTACCAGCCTATCAATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGC
581 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* *
899692 GTAGTGCCCGCCTGCCCGCCCGCCCTTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
646 GTAGTGCCCGCCCGCCCGCCCGCCC-GTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
** ** * * *
899757 CCAGTCTAAGATTGGATTGGACTGAGCGTTGCGGCAGCAAGATCGAAAGCATGCAGAGGGGGACC
710 CCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACC
*
899822 CGGTTGATCCACGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGT
775 CGGTCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGT
*
899887 GGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCGAAG
839 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CC--TC--AG
899952 CATACGGAGTTCATTCCCAGT
899 C-T-C--AG-TC--T---AGT
* * ** *
899973 TGAAGATCGGACCAGATCGAGGGTTGCGGCAGTACATGCTGGGCTCAAGCATGTGCTGGTGCCAC
1 T-AAGATCGGACC-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* **
900038 ATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACAGGAGAACCTGACCGACGACATTGGGGT
64 ATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCAC-GGAGAACCTGACCGACGACATTGGGGT
* *
900103 TCCGATGATCGGGGGGCCGGGGGGTGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTG
128 TCCGACGATCGGGGGGCC---GGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
900168 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCTCTTAAAGAGCATTC
189 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
* *
900233 GAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAAT
254 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
*
900298 GGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
319 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * **
900363 AAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCTGAAAAACTTTTAAAAAATCCTGAAC
384 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAAC
** * * * * *
900428 AACAAAAATTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGCCTTGCCAGGAAACTTCACGTGA
449 CGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
*
900493 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
514 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
* * * *
900558 ATATGTGCCTAAATCCACCTACCACCCTATCGTTTCACGGCTTGCGCATCCCGTCTCTCTGGCCG
579 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
900623 GCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
644 GCGTAGTGCCCGCCCGCCCGCCCGCCCG-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* ** * * * * *
900688 TCCCATTCTAAGATTGGACCAGA-TCGAGGGTTACGGTAGCAAGATCGGCAGCACGTAGAGGGGG
708 TCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGG
* * * *
900752 ACCCGATCGATCCCCGGCTTGCGCATCCCG-CCCTCTAGCCGGCTGAGCGCCCGTACGCTCGTTT
772 ACCCGGTCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTT
* * * *
900816 CATGGGTTGACTTAGGTATACGAAGTTCATTGCCAGTCTAAGCATACGGAGTTCA-T--TC--C-
836 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTCAGCT
900875 CAG--TA--
901 CAGTCTAGT
* *
900880 TAAGATCGGACCTGACCGAGGGTTGCTGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGC-
1 TAAGATCGGACC-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
**
900944 -TTTT-TTC-T----------TCGTCGGAG-A--AC-CTG-ACCTG--CG--G-CATTGGGGTTC
65 TTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACGGAGAACCTGACCGACGACATTGGGGTTC
* *
900986 CGACGATCGGGGGGCCGGGGGGGTGTGCGCACATCATATGCGATGGGTGCTGGTACTTGGCCCTT
130 CGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * *
901051 ATATTGGCCCCTTATCCCTCATCAAACCTCAAGATCTCACACCCCCTTAAAGAGAATTTGAGATT
195 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
901116 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
260 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
901181 AAAATCTTGTACAGTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
325 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * * * *
901246 CACATCTTCCAAGTTTGGGGCCAAAACTCTTTGTGAAAAAAATTTAAAAAATCCCAAACCGGTAA
390 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACC-GCAA
* * * * *
901311 AAA-TTTTGAGAATTGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCC
454 AAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * * *
901375 TAAGGGAACATTGTACGAATTTATAAGCCATAAAAATGGCATTGGCAC-CTAGAAATATGAAGGT
519 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC-AGAAATATGAAGAT
** * *
901439 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTATGTATCTCGTCTCTCTGGCCGGCGT
583 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * * *
901504 AGTGCCTGCCCGCCCG-CC-CAC-TCGTTTCGTCGGTTGGCTTAGGTATACGGAGTTCTTTCCCA
648 AGTGCCCGCCCGCCCGCCCGCCCGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * *
901566 GTGTAAGATCAGACCGGA-TCGAGGGTTGCGGTAGTACGATCGACAGCACGTAGAAGGGGACCCG
713 GTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACCCG
** * * *
901630 GTCGATCCCCAACTTGCACATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTTGTGG
777 GTCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGG
901695 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C---G-----------G---A--C
841 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTCAGCTCAGTC
901739 ----
906 TAGT
* * * *
901739 ------C-G---GACCGAGGGTTGCGGCAGGACATGCTGGGCTCGAGCATGTGTTGGTGCCGTAT
1 TAAGATCGGACCGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * * *
901794 TTTTCTTC-GCTAGGGCACCATCGTCGGAGCATCGTCGGAGAACCTAACCGACGGCATTGGGGTT
66 TTTTCTTCATC-GGGGCACCATCGTCGGAGCATC-ACGGAGAACCTGACCGACGACATTGGGGTT
* *
901858 CCGACGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGCTACTTGGCCC
129 CCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * *
901923 TTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCGCCTTAAAGAGCATTTGAGA
193 TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
901988 TTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTC
258 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * * *
902053 ACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCAAGTCAACAAAAATACAAGG
323 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * * * *
902118 ATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACAGCA
388 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCA
* * *
902183 AAATG-TTTAAAAATCGTGAAAAATAAAAAACGAGTAGTCTTGCCATGAAACTTCACGTGAAGGC
453 AAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * * * * *
902247 TTAAGGGACCACTGTTTGAATTTACAAGGCATGAAATTGGCATTGGCACGTAGAAATATGAAGAT
518 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
* * *
902312 GTTCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGT-TCTCTAGCCGGCGT
583 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * * * *
902376 AGT----GCCAGCCCGCCCG--C-TCATTTCGTCGATGGGGTTAGGCATACGGAGTTCATTCCCA
648 AGTGCCCGCCCGCCCGCCCGCCCGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
** * * * * * *
902434 GTCTAAGATTGGACCGGACTGAGGGATGCAGTAGCAGGACCGACAGCACGCAGAGGGGGACCCGA
713 GTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGG
* * * * * * * * * * *
902499 CCAATCTCCGGCATGCGCATCCCACCCCTCTAGTCGGCTGAGCGCCTGCATGCTCATTTCATGGG
778 TCGATC-CCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGG
902564 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA-T--T--GC-CAG--T
842 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTCAGCTCAGTCT
902621 --T
907 AGT
* * * *
902622 TAAGATTGGACCGGACCGAGAGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGCA
1 TAAGATCGGACC-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* *
902687 TTTTTCTTCACCGGGGCACCATCGTCGGAGCATCTTCGGAGAACCTGACCGACGACATTGGGGTT
65 TTTTTCTTCATCGGGGCACCATCGTCGGAGCATC-ACGGAGAACCTGACCGACGACATTGGGGTT
** * * * *
902752 TTGGCGATTGGGGGGCC-TGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCT
129 CCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* * *
902816 TATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAGCCCTTTAAAAAGCATTTGAGAT
194 TATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
902881 TTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCA
259 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * *
902946 CAAAATCTTGT-CGACTTCGAGTTTTTAGGTGAATTTTTTTATGCATGCCAAAAAAAATAAAAGG
324 CAAAATCTTGTAC-ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
**
903010 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-TCGAAAAAATTTTAAAAAATCCTGAACCGC
388 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCCCAAACCGC
* * * * *
903074 AAAAAGTTTTGAAAATCCTGAAAAATAGAAAACGAGTTGTCTTGCCATAAAACTCCACGTGAAGG
452 AAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
903139 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGA
517 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* *
903204 TGTGCCTAAGCCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGAG-
582 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-GC
* *
903268 GTAGTGCCCGCCCGCCTGCCCG--C-TCGTTTCATCGGTTGGCTTAGGCATAC-GAGTTCATTCC
646 GTAGTGCCCGCCCGCCCGCCCGCCCGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * *
903329 CAATCTAAGATCAGACCGGACCGAGGGTTG-GGACAGCAGGATCGGCAACACGCAAAGGGGGACC
711 CAGTCTAAGATCAGACCGGACTGAGGGTTGCGG-CAGCAAGATCGACAGCACGCAGAGGGGGACC
* * * * * * **
903393 CAGCCGATCCCTGGCTTACGCATCCCGCCCCTTTGGCCGGCTGAGCGCACGCACGCTCGTTTTAT
775 CGGTCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGT
* * ** *
903458 GGGTTGAATTAGGCATACAGAGTTCATTCCCAGAGTAAGCATACGAAGTTCA-T--TC--C-CAG
839 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTCAGCTCAG
903517 TC----
904 TCTAGT
** ** * * *
903519 TAAGATCGGATTGAACCGAGGGTTGTAGCAGCACATGCTGGGCTCGGGCATGTGTTGGAGCCGTA
1 TAAGATCGGACCG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * *
903584 TTTTTCTTCACCGAGGCACTATCGTCGGAGCATCATCGAAGAACCTGACCGACGACATTGGGGTT
65 TTTTTCTTCATCGGGGCACCATCGTCGGAGCATCA-CGGAGAACCTGACCGACGACATTGGGGTT
* *
903649 CCGTCGATCGGGGGGACCGGGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
129 CCGACGATCGGGGGG-CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * *
903714 TTATATTGGCGCCCTACCCCTAATCAAACCTCAAGAACTCACA-CCCCTTAAAGAGCATTTGAGA
193 TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * * * *
903778 TTTTGCAAGTTTGCTGCCAGTAGCCTTTAAAGTGTCTAAAATGGGGACGCTTTTTTCAAATGGTC
258 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
903843 GCAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGG
323 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * * ** *
903908 ATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTTCGAAAAAATTTCAAAAAATCCCGAATTGT
388 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCCCAAACCGC
* *
903972 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAG
452 AAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
904037 CTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
517 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* * * *
904102 TGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCAGTCTCTCTGGTCGACG
582 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * *
904167 TATTGCCCACACGCCCGCCCGCCCGGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
647 TAGTGCCCGCCCGCCCGCCCGCCC-GTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * ** * *
904232 CAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAAGATCGGTAGCACGCGGAGGGGGACAC
711 CAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACCC
* * *
904297 GGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGACCGACTGAGCACCCGCACGCTCGTTTCGTG
776 GGTCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTG
904362 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC-TT--TC--C-CAGT
840 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTCAGCTCAGT
904421 CTA--
905 CTAGT
** * * * *
904424 -AA-ATCAAACCAGATCGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATTTGCTGGTGCCGCA
1 TAAGATCGGACC-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * *
904487 TTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACAGGCGGCATTGGGGTT
65 TTTTTCTTCATCGGGGCACCATCGTCGGAGCATCA-CGGAGAACCTGACCGACGACATTGGGGTT
* *
904552 CCGATGATCGGGGGG-C-GGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
129 CCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
904615 TATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
194 TATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
904680 TTTACAGGTTTGCTGTCGGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
259 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
904745 CAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCTAAGAAAAATACAAGGA
324 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * * ** * * * ** *
904810 GCATGTCTGCCAGGTTTGGGGCCAAAACTCCACCCGAAAAATTTTTTAAAAATCCCAAATTGTAA
389 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCAA
* * * * * *
904875 AAAGTTTCAAAAATCGTGAAAAATGGAAAAAGAGTTGTGTTGCCATGAAACTTCATGTGAAGGCT
454 AAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * * * *
904940 TAAGGGACAATTATATGAATTTACAAGCCATAAAAATGGCGTTGGCATGCAAAAATATGAAGATG
519 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATG
* ** * * * * *
905005 TGCCTAAACCCACCTACCATCCTATTAATGCATGGCTTGCACAGCCCGTCTCTCTGGTCGGCGTA
584 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* * * * *
905070 GTGCCCACCCGTCTGCCCGCCCGATCGTTTCGTCGGTTAGCTTAGGCATACGAAGTTCATTCCCA
649 GTGCCCGCCCGCCCGCCCGCCCG-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
*
905135 GTCTAAGCATACGGAGTTTATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTCGA
713 GTCTAAG-AT-C--AG---A---CC-G-----G-A-CT-GAG----------G-----G-TT-G-
* * * **
905200 CCGGACCGAGGGATGCGGCAGCAGGACCGATAGCACGCAAAGGGGGACCCGACCGATCCCCGGCT
741 -CGG--C-----A----GCA--A-GATCGACAGCACGCAGAGGGGGACCCGGTCGAT-CCCGGCT
* * * * * * *
905265 TACGCATCCTGCCCCTCTGGTCGACTGAGCACCTGCATGCTCATTTCGTGGGTTGACTTAGGCAT
790 TGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
*
905330 ACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA-T--T-A-C-CAG--TA--
855 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTCAGCTCAGTCTAGT
* * * * * * *
905375 TAAGATCAGACTGGACCGAGAGTTACGGCAGCACATGCTGGGCTCGAGCATTTGCTGGTGCCACA
1 TAAGATCGGAC-CGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * *
905440 TTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGACATTGGGGTT
65 TTTTTCTTCATCGGGGCACCATCGTCGGAGCATC-ACGGAGAACCTGACCGACGACATTGGGGTT
* * * * * *
905505 -CTAGCGATTGGGGGGACGTGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTCGA
129 CCGA-CGATCGGGGGG-C-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
905569 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
191 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
*
905634 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGG
256 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * *
905699 TCACAACATCTTGTACACTTCGAGTTTTTAGTTGAATGTTTTTGTGCATGCTAACAAAAATACAA
321 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* *
905764 GGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT-TCGAAAAAATTTTAAAAAATCCCGAACC
386 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCCCAAACC
* * *
905828 ACAAAAAGTTTTAAAAATCTTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAA
450 GCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* *
905893 GGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
515 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
*
905958 GATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGG
580 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* *
906023 CGTAGTGCCCGCCCGCCCGTCCG--C-TCATTTCGTCGGTTGGCTTAGGCATAC-GAGTTCATTC
645 CGTAGTGCCCGCCCGCCCGCCCGCCCGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * *
906084 CCAGTCTAGGATCAGACCAGACCGAGGATTGGGGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
710 CCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACC
* * * * * * * *
906149 CTGTCGATCCCTGGCTTACGCATCCCACCCCTCTGGCCGGCGGAGCACACGGACGCTCGTTTCGT
775 CGGTCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGT
* *
906214 GGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCA-T--TC--C-CAG
839 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTCAGCTCAG
906273 TC----
904 TCTAGT
* * * * * * *
906275 TAAGATCGGACCAGGCCGAGGGTTGCAGCCGCACATGCTGGGCTCGGGCATGTGTTGGAGTCGTA
1 TAAGATCGGACC-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * * *
906340 TTTTTCTTCA-CTAGGGCACCATCGTCAGAGCATCACCGATGAACCAGACCGACGGCATTGGGGT
65 TTTTTCTTCATC-GGGGCACCATCGTCGGAGCATCACGGA-GAACCTGACCGACGACATTGGGGT
* * *
906404 TCCGTCGATCCGGGGGACCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGAC
128 TCCGACGAT-CGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
** * *
906469 CTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCTCTTAAAAAGCATTTGAG
192 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * *
906534 ATTTCACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGAACACTTTTTTCAAATGGT
257 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * * *
906599 CCCAAAATCTTGTACACTTTGAGTTTTTAGCTTAATGTTTTTGTGCATGCCAACAAAAATACAAG
322 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * *
906664 GATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCTAACCGT
387 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGC
* *
906729 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGG
452 AAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
906794 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGA
517 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* * *
906859 TGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTAGCCAGCG
582 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* *
906924 TAGTGCCCACCCGCCCGCCCGCCCGATCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCC
647 TAGTGCCCGCCCGCCCGCCCGCCCG-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* *
906989 CAGTCTAAGACCAGACCGGACCGAGGGTTGCGGCAGCA
711 CAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCA
907027 CATGTTAGGC
Statistics
Matches: 7711, Mismatches: 895, Indels: 497
0.85 0.10 0.05
Matches are distributed among these distances:
848 47 0.01
850 4 0.00
851 3 0.00
852 1 0.00
853 1 0.00
861 1 0.00
862 9 0.00
863 1 0.00
866 1 0.00
867 2 0.00
868 183 0.02
869 6 0.00
870 3 0.00
872 18 0.00
873 291 0.04
874 353 0.05
875 128 0.02
876 293 0.04
877 460 0.06
878 9 0.00
879 3 0.00
880 262 0.03
881 29 0.00
882 2 0.00
884 2 0.00
886 6 0.00
887 170 0.02
888 2 0.00
889 2 0.00
890 3 0.00
891 38 0.00
892 329 0.04
893 165 0.02
894 121 0.02
895 2 0.00
896 4 0.00
897 289 0.04
898 423 0.05
899 582 0.08
900 315 0.04
901 436 0.06
902 30 0.00
903 326 0.04
904 661 0.09
905 4 0.00
906 57 0.01
907 2 0.00
908 1 0.00
909 1 0.00
910 2 0.00
911 2 0.00
912 3 0.00
914 3 0.00
916 1 0.00
917 6 0.00
918 1 0.00
919 3 0.00
920 5 0.00
922 1 0.00
923 1 0.00
926 2 0.00
929 7 0.00
930 119 0.02
931 3 0.00
932 85 0.01
933 590 0.08
934 3 0.00
935 2 0.00
936 3 0.00
937 1 0.00
939 2 0.00
941 1 0.00
942 2 0.00
945 1 0.00
946 1 0.00
948 2 0.00
950 4 0.00
951 4 0.00
952 23 0.00
953 273 0.04
954 2 0.00
955 1 0.00
957 471 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (909 bp):
TAAGATCGGACCGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
TTTTCTTCATCGGGGCACCATCGTCGGAGCATCACGGAGAACCTGACCGACGACATTGGGGTTCC
GACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
TATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCAAAA
AGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTG
CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
GCCCGCCCGCCCGCCCGCCCGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
TAAGATCAGACCGGACTGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGGTCG
ATCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTCAGCTCAGTCTAGT
Found at i:900863 original size:26 final size:26
Alignment explanation
Indices: 900833--900883 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
900823 TGACTTAGGT
* *
900833 ATACGAAGTTCATTGCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTATAAGC
*
900859 ATACGGAGTTCATTCCCAGTATAAG
1 ATACGAAGTTCATTCCCAGTATAAG
900884 ATCGGACCTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTATAAGC
Found at i:902603 original size:26 final size:26
Alignment explanation
Indices: 902573--902625 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
902563 GTTGACTTAG
902573 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
902599 GCATACGGAGTTCATTGCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
902625 G
1 G
902626 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:903522 original size:26 final size:26
Alignment explanation
Indices: 903470--903522 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
903460 GTTGAATTAG
*
903470 GCATACAGAGTTCATTCCCAGAGTAA
1 GCATACAGAGTTCATTCCCAGACTAA
*
903496 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGACTAA
903522 G
1 G
903523 ATCGGATTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGACTAA
Found at i:904409 original size:26 final size:26
Alignment explanation
Indices: 904373--904424 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
904363 GTTGACTTAG
904373 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
904399 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
904425 AATCAAACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:905152 original size:26 final size:26
Alignment explanation
Indices: 905115--905193 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
905105 GTTAGCTTAG
*
905115 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
905141 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
905167 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
905193 G
1 G
905194 ATTCGACCGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:905355 original size:26 final size:26
Alignment explanation
Indices: 905326--905378 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
905316 GTTGACTTAG
* * *
905326 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTACCAGTATAA
905352 GCATACGAAGTTCATTACCAGTATAA
1 GCATACGAAGTTCATTACCAGTATAA
905378 G
1 G
905379 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTACCAGTATAA
Found at i:906262 original size:26 final size:26
Alignment explanation
Indices: 906226--906278 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
906216 GTTGACATAG
906226 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
906252 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
906278 G
1 G
906279 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:906913 original size:899 final size:896
Alignment explanation
Indices: 901705--907026 Score: 6607
Period size: 899 Copynumber: 5.9 Consensus size: 896
901695 GTTGACTTAG
* *
901705 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGGACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
* * * * * *
901770 CTCGAGCATGTGTTGGTGCCGTATTTTTCTTCGCTAGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTAGGGCACCATCGTCGGAGCATCGACCGAGA
* * * * *
901835 ACCTAACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTG
131 ACCTGACCGACGACATTGGGGTTCCGTCGATCGGGGGGACCGGGGGGGTGTGCGCACATGATGTG
* *
901900 CGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
901965 ACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACC-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* *
902030 GGGGACAATTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAAT-TGTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGT-TTTT
* * * *
902094 GTGCAAGTCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAA
* * * *
902159 AATTTTAAAAAATCTCGAACAGCAAAATGTTT-AAAAATCGTGAAAAATAAAAAACGAGT-AGTC
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCA-TC
* * * * *
902222 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTTTGAATTTACAAGGCATGAAATTGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
902287 CATTGGCACGTAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATTGATCCACGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
902352 CGCATCCCGT-TCTCTAGCCGGCGTAGT----GCCAGCCCGCCCGCTCATTTCGTCGATGGGGTT
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
** * * * *
902412 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGA-TGCAGTAGCAGGACCG
713 AGGCATAC-GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA-GGATTGCGGCAGCAGGATCG
* * * * * * *
902476 ACAGCACGCAGAGGGGGACCCGACCAATCTCC-GGCATGCGCATCCCACCCCTCTAGTCGGCTGA
776 GCAGCACGCAGAGGGGGACCCG-CCGATC-CCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
902540 GCGCCTGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 GCACC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
902599 GCATACGGAGTTCATTGCCAGTTTAAGATTGGACCGGACCGAGAGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
* * ** ** *
902664 CTCAGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCTTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTAGGGCACCATCGTCGGAGCATCGACCGAGA
** * * *
902729 ACCTGACCGACGACATTGGGGTTTTGGCGATTGGGGGG-CC-TGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGACATTGGGGTTCCGTCGATCGGGGGGACCGGGGGGGTGTGCGCACATGATGTG
* *
902792 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
902857 AGCCCTTTAAAAAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAAT
261 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* *
902922 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGT-CGACTTCGAGTTTTTAGGTGAATTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC-ACTTCGAGTTTTTAGCTGAATGTTTTT
* * *
902986 ATGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-CGAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCCGAAA
* ** * **
903050 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCCTGAAAAATAGAAAACGAGTTGTC
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATC
* *
903115 TTGCCATAAAACTCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
903180 CATTGGCATGCAAAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
903245 CGCATCCCGTCTCTCTGGTCGAG-GTAGTGCCCGCCCGCCTGCCCGCTCGTTTCATCGGTTGGCT
648 CGCATCCCGTCTCTCTGGCCG-GCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* *
903309 TAGGCATACGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTG-GGACAGCAGGATCG
712 TAGGCATACGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGATTGCGG-CAGCAGGATCG
* * *
903373 GCAACACGCAAAGGGGGACCCAGCCGATCCCTGGCTTACGCATCCCGCCCCTTTGGCCGGCTGAG
776 GCAGCACGCAGAGGGGGACCC-GCCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAG
* ** * * **
903438 CGCACGCACGCTCGTTTTATGGGTTGAATTAGGCATACAGAGTTCATTCCCAGAGTAA
840 CAC-CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
903496 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATTGAACCGAGGGTTGTAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
* * * * * *
903561 CTCGGGCATGTGTTGGAGCCGTATTTTTCTTCAC-CGAGGCACTATCGTCGGAGCATC-ATCGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTAG-GGCACCATCGTCGGAGCATCGACCG-A
*
903624 GAACCTGACCGACGACATTGGGGTTCCGTCGATCGGGGGGACCGGGGGGGTATGCGCACATGATG
129 GAACCTGACCGACGACATTGGGGTTCCGTCGATCGGGGGGACCGGGGGGGTGTGCGCACATGATG
* * * *
903689 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCGCCCTACCCCTAATCAAACCTCAAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
903754 ACACCCCTTAAAGAGCATTTGAGATTTTGCAAGTTTGCTGCCAGTAGCCTTTAAAGTGTCTAAAA
259 ACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
* * *
903819 TGGGGACGCTTTTTTCAAATGGTCGCAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTT
*
903884 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAA
* ** * *
903949 AATTTCAAAAAATCCCGAATTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCT
* *
904014 TGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
904079 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
904144 GCATCCAGTCTCTCTGGTCGACGTATTGCCCACACGCCCGCCCGCCCGGTCGTTTCGTCGGTTGG
649 GCATCCCGTCTCTCTGGCCGGCGTAGTG--C-C-CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * *
904209 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAAGAT
710 CTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGATTGCGGCAGCAGGAT
* * * * * *
904274 CGGTAGCACGCGGAGGGGGACACGGCCGAT-CCTCGGCTTGCGCATCCCGCCCCTCTGACCGACT
774 CGGCAGCACGCAGAGGGGGAC-CCGCCGATCCCT-GGCTTACGCATCCCGCCCCTCTGGCCGGCT
904338 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 GAGCA-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
904399 GCATACGGAGTTCTTTCCCAGTCTAAAATCAAACCAGATCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
* * *
904464 CTCAGGCATTTGCTGGTGCCGCATTTTTCTTCA-TCGGGGCACCATCGTCGGAGCATC-ACCGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACT-AGGGCACCATCGTCGGAGCATCGACC-GA
* * * *
904527 GAACCTGACAGGCGGCATTGGGGTTCCGAT-GATCGGGGGG--C-GGGGGGTGTGTGCACATGAT
129 GAACCTGACCGACGACATTGGGGTTCCG-TCGATCGGGGGGACCGGGGGGGTGTGCGCACATGAT
*
904588 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
904653 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCGGTAGCCATTAAAGTGTCTGA
258 CACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
* *
904718 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTT
* * * * * * ***
904783 TTGTGCATGCTAAGAAAAATACAAGGAGCATGTCTGCCAGGTTTGGGGCCAAAACTCCACCCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAA
* * * ** * * * **
904848 AAATTTTTTAAAAATCCCAAATTGTAAAAAGTTTCAAAAATCGTGAAAAATGGAAAAAGAGTTGT
452 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCAT
* * * *
904913 GTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACAATTATATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * ** * *
904978 GCGTTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATTAATGCATGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
905043 GCACAGCCCGTCTCTCTGGTCGGCGTAGTGCCCACCCGTCTGCCCGCCCGATCGTTTCGTCGGTT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-GCC--C-GCCCGCCCGCTCGTTTCGTCGGTT
* * **
905108 AGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGCATAT
708 GGCTTAGGCATACG-AGTTCATTCCCAGTCTAAG-AT-C--AG---A---CC-G---GA-CCGA-
** * * * * ** ** *
905173 GGAGTT-CATTCCCAGTCTAAGATTCGACCGGAC-C-GAGGGATGCGGCAGCAGGACCGATAGCA
756 GGA-TTGC---GGCAG-C-AGGA-TCGGCAGCACGCAGA-GG--G-GG-A-CCCG-CCGATCCCT
* ** * * ** * * * *
905235 CGCAAAGGGGGA-CCCGACCGATC--CCCGGCTTACGCATCCTGC-CCCTC-TGGTCGACTGAGC
807 GGCTTA--CGCATCCCG-CCCCTCTGGCCGGCTGA-GCA-CC-GCACGCTCGT-TTCG--TG-G-
* *
905295 ACCTGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
861 ----G--T--TGA-C------------TTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
905352 GCATACGAAGTTCATTACCAGTATAAGATCAGACTGGACCGAGAGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
* * * * * *
905417 CTCGAGCATTTGCTGGTGCCACATTTTTCTTCAC-CGAGGCACCATCGTCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTAG-GGCACCATCGTCGGAGCATCGACCGAG
* * * *
905481 AACCTGACCGACGACATTGGGGTTCTAG-CGATTGGGGGGACGTGGGGGGGTGTACGCACATGAT
130 AACCTGACCGACGACATTGGGGTTC-CGTCGATCGGGGGGAC-CGGGGGGGTGTGCGCACATGAT
* *
905545 GTGCGATGGGTGCTGGTACTTCGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
905610 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
258 CACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
* *
905675 AATGGGGACACTTTTTTCAAATGGTCACAACATCTTGTACACTTCGAGTTTTTAGTTGAATGTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTT
* *
905740 TTGTGCATGCTAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTT-CGA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCCGA
* * *
905804 AAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCTTGAAAAATAGAAAACGAGTCA
451 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCA
*
905869 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
905934 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCT
581 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
905999 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCATTTCGTCGGTTGGC
646 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * *
906064 TTAGGCATACGAGTTCATTCCCAGTCTAGGATCAGACCAGACCGAGGATTGGGGCAGCAGGATCG
711 TTAGGCATACGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGATTGCGGCAGCAGGATCG
* * *
906129 GCAGCACGCAGAGGGGGACCCTGTCGATCCCTGGCTTACGCATCCCACCCCTCTGGCCGGCGGAG
776 GCAGCACGCAGAGGGGGACCC-GCCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAG
* *
906194 CACACGGACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAA
840 CAC-CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
906252 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGG-CCGAGGGTTGCAGCCGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GGACCGAGGGTTGCAGCAGCACATGCTGG
* * * * *
906316 GCTCGGGCATGTGTTGGAGTCGTATTTTTCTTCACTAGGGCACCATCGTCAGAGCATC-ACCGAT
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTAGGGCACCATCGTCGGAGCATCGACCGA-
* * *
906380 GAACCAGACCGACGGCATTGGGGTTCCGTCGATCCGGGGGACCGGGGGGGTGTGCGCACATGATG
129 GAACCTGACCGACGACATTGGGGTTCCGTCGATCGGGGGGACCGGGGGGGTGTGCGCACATGATG
* *
906445 TGCGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
906510 ACACCCTCTTAAAAAGCATTTGAGATTTCACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
259 ACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
* * * *
906575 ATGGGAACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTTGAGTTTTTAGCTTAATGTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTT
906640 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAA
* *
906705 AAATTTTAAAAAATCCCTAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATC
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATC
906770 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
906835 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
906900 CGCATCCCGTCTCTCTAGCCAGCGTAGTGCCCACCCGCCCGCCCGCCCGATCGTTTCGTCGGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * *
906965 GCTTAGGCATATGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTGCGGCAGCA
709 GCTTAGGCATA-CGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGATTGCGGCAGCA
907027 CATGTTAGGC
Statistics
Matches: 3832, Mismatches: 460, Indels: 262
0.84 0.10 0.06
Matches are distributed among these distances:
891 1 0.00
892 279 0.07
893 161 0.04
894 161 0.04
895 1 0.00
896 7 0.00
897 286 0.07
898 420 0.11
899 561 0.15
900 247 0.06
901 427 0.11
902 44 0.01
903 329 0.09
904 50 0.01
905 2 0.00
908 1 0.00
911 2 0.00
912 1 0.00
913 2 0.00
915 2 0.00
916 2 0.00
917 4 0.00
918 2 0.00
920 3 0.00
921 3 0.00
922 8 0.00
923 8 0.00
924 9 0.00
925 16 0.00
926 19 0.00
927 17 0.00
928 19 0.00
929 9 0.00
930 9 0.00
931 7 0.00
932 3 0.00
933 3 0.00
935 2 0.00
936 4 0.00
937 2 0.00
938 2 0.00
940 2 0.00
942 2 0.00
945 1 0.00
948 2 0.00
950 1 0.00
951 2 0.00
952 19 0.00
953 201 0.05
954 3 0.00
956 2 0.00
957 461 0.12
958 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTAGGGCACCATCGTCGGAGCATCGACCGAGA
ACCTGACCGACGACATTGGGGTTCCGTCGATCGGGGGGACCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGATTGCGGCAGCAGGATCGGCAGC
ACGCAGAGGGGGACCCGCCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCACCGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:907628 original size:716 final size:711
Alignment explanation
Indices: 906252--907703 Score: 2279
Period size: 716 Copynumber: 2.0 Consensus size: 711
906242 CCCAGTCTAA
* * * *
906252 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGGCCGAGGGTTGCAGCCGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGACCAGACCAGGCCGAGGGTTGCAGCAGCACATGCTAGG
* * * *
906317 CTCGGGCATGTGTTGGAGTCGTATTTTTCTTCACTAGGGCACCATCGTCAGAGCATCACCGATGA
66 CTCGGGCATGTGCTGGAGCCGCATTTTTCTTCACTAGGGCACCATCATCAGAGCATCACCGATGA
* *
906382 ACCAGACCGACGGCATTGGGGTTCCGTCGATCCGGGGGACCGGGGGGGTGTGCGCACATGATGTG
131 ACCAGACCGACGGCATTGGGGTTCCGACGATCCGGGGGACCGGGGGGGTGTGCACACATGATGTG
906447 CGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * *
906512 ACCCTCTTAAAAAGCATTTGAGATTTCACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
261 ACCCCCTTAAAAAGCATTTGAGATTTCACAGGTTTACTGCCAATAGCCATTAAAGTGTCTAAAAT
* * * *
906577 GGGAACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTTGAGTTTTTAGCTTAATGTTTTTG
326 GGGAACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATGTTTTTG
* * * *
906642 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAA
391 TGCATGCCAAAAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
906707 ATTTTAAAAAATCCCTAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
456 ATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
906772 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
906837 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
586 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCA
* *
906902 CATCCCGTCTCTCTAGCCA-GCGTAGTGCCCACCCGCCCGCCCGCCCGATCGTTTCGTCGGTTGG
651 CATCCCGTCTCTCTAG-CAGGCGTAGTG----CCCGCCCG-CC-CAC--TCGTATCGTCGGTTGG
*
906966 CTTAG
707 ATTAG
* *
906971 GCATATGGAGTTCATTCCCAGTCTAAGACCAGACC-GGACCGAGGGTTGCGGCAGCACATGTTAG
1 GCATATGGAGTTCATTCCCAGTCTAAGACCAGACCAGG-CCGAGGGTTGCAGCAGCACATGCTAG
* ** * *
907035 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCATCGGAGCATCACCAGA-
65 GCTCGGGCATGTGCTGGAGCCGCATTTTTCTTCACTAGGGCACCATCATCAGAGCATCACC-GAT
* *
907099 GAACCTGACCGATGGCATTGGGGTTCCGACGAT-CGGGGG-CC-GGGGGGTGTGCACACATGATG
129 GAACCAGACCGACGGCATTGGGGTTCCGACGATCCGGGGGACCGGGGGGGTGTGCACACATGATG
907161 TGCGATGGGTGCTGGTACTTGG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
* * * *
907225 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAATAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAAAGCATTTGAGATTTCACAGGTTTACTGCCAATAGCCATTAAAGTGTCTAAA
* *
907290 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTT
324 ATGGGAACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATGTTTT
** *
907355 TGTGCATGCCAAAAAAAAATAAAAGGATCACATCTATGAAGTTTGGGGGCAAAACTCCTTCCGAA
389 TGTGCATGCC-AAAAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* *
907420 AAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGT
453 AAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCAT
907485 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** *
907550 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
583 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
907615 GCACATCCCGTCTCTCTAGCAGGCGTAGTGCCCGCCCGCCCACTCGTATCGTCGGTTGGATTAG
648 GCACATCCCGTCTCTCTAGCAGGCGTAGTGCCCGCCCGCCCACTCGTATCGTCGGTTGGATTAG
* *
907679 GCATACGGAGTTCATACCCAGTCTA
1 GCATATGGAGTTCATTCCCAGTCTA
907704 GGATCAAACC
Statistics
Matches: 677, Mismatches: 52, Indels: 19
0.91 0.07 0.03
Matches are distributed among these distances:
708 42 0.06
710 2 0.00
711 2 0.00
712 8 0.01
715 171 0.25
716 303 0.45
717 2 0.00
718 8 0.01
719 137 0.20
720 2 0.00
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26
Consensus pattern (711 bp):
GCATATGGAGTTCATTCCCAGTCTAAGACCAGACCAGGCCGAGGGTTGCAGCAGCACATGCTAGG
CTCGGGCATGTGCTGGAGCCGCATTTTTCTTCACTAGGGCACCATCATCAGAGCATCACCGATGA
ACCAGACCGACGGCATTGGGGTTCCGACGATCCGGGGGACCGGGGGGGTGTGCACACATGATGTG
CGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
ACCCCCTTAAAAAGCATTTGAGATTTCACAGGTTTACTGCCAATAGCCATTAAAGTGTCTAAAAT
GGGAACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATGTTTTTG
TGCATGCCAAAAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCA
CATCCCGTCTCTCTAGCAGGCGTAGTGCCCGCCCGCCCACTCGTATCGTCGGTTGGATTAG
Found at i:909296 original size:835 final size:833
Alignment explanation
Indices: 907679--909344 Score: 2503
Period size: 835 Copynumber: 2.0 Consensus size: 833
907669 GTTGGATTAG
* ** * *
907679 GCATACGGAGTTCATACCCAGTCTAGGATCAAACCAGATTGAGGGTGGCGGCCGCAGGATCGGTA
1 GCATACGGAGTTCATACCCAGTCTAAGATCAAACCAGACCGAGGGTGGCGGCAGCAGGATCGGCA
* * * * * *
907744 GCACACAGAGGGGGACACGGCCGATCCCCGACTTGCGCATCTCGCCCCTCTTGTCGGCTGAGCGC
66 GCACACAGAGGGGGACACGACCAATCCCCGACTTGCGCACCCCGCCCCTCTGGCCGGCTGAGCGC
* * **
907809 CCGCATGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAAGCATACAGGA
131 CCGCACGCTCGTTTCATGGGTTGAATTAGGCATACAGAGTTCATTCCCAATCTAAGCATACAGGA
* * *
907874 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCAT
196 GCTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGCAT
** *
907939 ATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAATCGTCGGAGAACCTGAACG
261 ATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAATCACCAGAGAACCTGAACG
* * * ** *
908004 GCAGCATTAGGGTTCCGACAATCGGGGGTATCGGGGGGTGTGCACCATGATGTGTGATGGGTGCT
326 ACAGCATTAGGGTTCCGACAATCGGGGGGACCGGGGGGTGTGCAAAATGATGTGCGATGGGTGCT
*
908069 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATCGAGAACTCACACCCCCTTAAA
391 GGTACTTGGCCCGTATATTGGCCCCCTATCCCTCATCAAACATCGAGAACTCACACCCCCTTAAA
* *
908134 GAGCATTTGAGATTTTACAGTTTTGCTGCCAGTAGCAATTAAAGTGTTTGAAATGGGGACACTTT
456 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTT
*
908199 TTTCAAATGGTCACAAAATCTTGTACACTTCGGGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
521 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
908264 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTGCGAAAAAATTTTAAAAAA
586 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTGCGAAAAAATTTTAAAAAA
* * * *
908329 TCCCAAACCGTAGAAAGTTTTAAAAATCATGAAAAATAGAAAACAAGTCGTCCTACCATGAAACT
651 TCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCATCCTACCATGAAACT
* * *
908394 TCATGTGAAGGCTTAAGGGACCACTGTATGAATTTACATGCCATAAAAAAGGCATTGGCACGCAG
716 TCACGTGAAGGCTTAAAGGACCACTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCACGCAG
*
908459 AAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAA
781 AAATATGAAGATATGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTAA
* ** * * *
908512 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCA
1 GCATACGGAGTTCATACCCAGTCTAAGATCAAACCAGACCGAGGGTGGCGGCAGCAGGATCGGCA
*** * * * *
908577 GCATGTAGAGGGGGAGC-CGATCAATCCTCGGCTTGTGCACCCCGCCCCTCTGGCCGGCTGAGCG
66 GCACACAGAGGGGGA-CACGACCAATCCCCGACTTGCGCACCCCGCCCCTCTGGCCGGCTGAGCG
* * * *
908641 CCCGCACGCTTGTTTCGTGGGTTGAATTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA-TGG
130 CCCGCACGCTCGTTTCATGGGTTGAATTAGGCATACAGAGTTCATTCCCAATCTAAGCATACAGG
* *
908705 AGCTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGCA
195 AGCTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGCA
* * * *
908770 TGTGGTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCAGAGAACCTGACC
260 TATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAATCACCAGAGAACCTGAAC
* * *
908835 GAC-GACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTTGTGCATAAATGATGTGCGATGG
325 GACAG-CATTAGGGTTCCGACAATCGGGGGGACC-GGGGGG-TGTGCA-AAATGATGTGCGATGG
* *
908899 GTGTTGGTACTTGGCCCGTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
386 GTGCTGGTACTTGGCCCGTATATTGGCCCCCTATCCCTCATCAAACATCGAGAACTCACACCCCC
*
908964 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
451 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGAC
*
909029 ACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
516 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
909094 CCAACAAAAATACAAGGATCACGTGTACTAAGTTTGGGGCCAAAACTCCTT-CTGAAATAATTTT
581 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTGC-GAAAAAATTTT
* * * * *
909158 AAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTATCTTGCCAT
645 AAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCATCCTACCAT
* * *
909223 GAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGTC
710 GAAACTTCACGTGAAGGCTTAAAGGACCACTGTATGAATTTACAAGCCATAAAAAAGGCATTGGC
* * *
909288 ATGCAGAAATCTGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTT
775 ACGCAGAAATATGAAGATATGCCTAAACCCAACTACCACCCTATCGATCCACGGCTT
909345 GCGCATCCCG
Statistics
Matches: 744, Mismatches: 83, Indels: 10
0.89 0.10 0.01
Matches are distributed among these distances:
831 1 0.00
832 145 0.19
833 163 0.22
834 8 0.01
835 427 0.57
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (833 bp):
GCATACGGAGTTCATACCCAGTCTAAGATCAAACCAGACCGAGGGTGGCGGCAGCAGGATCGGCA
GCACACAGAGGGGGACACGACCAATCCCCGACTTGCGCACCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCATGGGTTGAATTAGGCATACAGAGTTCATTCCCAATCTAAGCATACAGGA
GCTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATACTGGGCTCGGGCAT
ATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAATCACCAGAGAACCTGAACG
ACAGCATTAGGGTTCCGACAATCGGGGGGACCGGGGGGTGTGCAAAATGATGTGCGATGGGTGCT
GGTACTTGGCCCGTATATTGGCCCCCTATCCCTCATCAAACATCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTGCGAAAAAATTTTAAAAAA
TCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCATCCTACCATGAAACT
TCACGTGAAGGCTTAAAGGACCACTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCACGCAG
AAATATGAAGATATGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTAA
Found at i:910099 original size:713 final size:711
Alignment explanation
Indices: 908697--910177 Score: 2347
Period size: 713 Copynumber: 2.1 Consensus size: 711
908687 CCCAGTCTAA
* *
908697 GCATATGGAGCTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATACTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCGGCAGCACATACTAGG
*
908762 CTCGGGCATGTGGTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCAGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCAGAGA
*
908827 ACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTTGTGCATAAATGATGT
130 ACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTTGTGCACAAATGATGT
*
908892 GCGATGGGTGTTGGTACTTGGCCCGTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGATGGTACTTGGCCCGTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
908957 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
909022 TGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
** * * *
909087 GTGCATGCCAACAAAAATACAAGGATCACGTGTACTAAGTTTGGGGCCAAAACTCCTTCTGAAAT
390 GTGCATGCCAACAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAC
* * * *
909152 AATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTATCT
455 AATTTAAAAAAAACCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
909217 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
909282 ATTGTCATGCAGAAATCTGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGC
585 ATTGGCACGCAAAAATATAAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGA
* * * *
909347 GCATCCCGTCTCTTTGGCCGACGTAGTGCTCCTCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTA
650 GCATCCCGTCTCTCTAGCCGACGTAGT--T-C-CCGCCCGCCCGCTCATTTCGTCGGTTGGCTTA
909412 G
711 G
* **
909413 GCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGCGGCAGCACATGTTAGGC
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGCGGCAGCACATACTAGGC
** *
909478 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCAGAGAA
* * * * * *
909543 CCTGATCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGTC-GGGGGG-TGTGCACACATGATGTG
131 CCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTTGTGCACAAATGATGTG
*
909606 CGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGATGGTACTTGGCCCGTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
909671 ACCCCCTTAAAGAGCGTTTGAGATTTTACCGGCTTGCTGCCTGTAGCCATTAAAGTGTCTGAAAC
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA-
909736 T-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
*
909800 GTGCATGCCAACAAAAATACAAGGATCACGCCTACCACGTTTGGGGCCAAAACTCCTTCCGAAAC
390 GTGCATGCCAACAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAC
** * *
909865 AATTTAAAAAAAACCCAAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
455 AATTTAAAAAAAACCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
* *
909930 TGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
909995 ATTGGCACGCAAAAATATAAAGATGTGCCTAAACCCACCTACTACCCTATCGATCTACGGCTTGA
585 ATTGGCACGCAAAAATATAAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGA
* *
910060 GCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAG
650 GCATCCCGTCTCTCTAGCCGACGTAGTTCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
* * * *
910122 GCATATGGAATTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCA
1 GCATATGGAGTTCATTCCCAGTCTAAGA-TCGACCGGACCGAGGGTTGCGGCAGCA
910178 TGATTGGCAG
Statistics
Matches: 703, Mismatches: 60, Indels: 10
0.91 0.08 0.01
Matches are distributed among these distances:
709 56 0.08
710 25 0.04
713 459 0.65
714 7 0.01
715 128 0.18
716 28 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (711 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGCGGCAGCACATACTAGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCAGAGAA
CCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTTGTGCACAAATGATGTG
CGATGGGTGATGGTACTTGGCCCGTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAACA
ATTTAAAAAAAACCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
GCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACGCAAAAATATAAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGAG
CATCCCGTCTCTCTAGCCGACGTAGTTCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
Found at i:910308 original size:26 final size:26
Alignment explanation
Indices: 910279--910331 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
910269 GTTGACTTAG
*
910279 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
910305 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
910331 G
1 G
910332 ATCGGACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:913731 original size:26 final size:26
Alignment explanation
Indices: 913695--913748 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
913685 GTTGACTTAG
*
913695 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCCAA
913721 GCATACGGAGTTCATTCCCAGTCCAA
1 GCATACGGAGTTCATTCCCAGTCCAA
913747 GC
1 GC
913749 TCAGACGAGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCCAA
Found at i:915171 original size:26 final size:26
Alignment explanation
Indices: 915141--915193 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
915131 GTTGACTTAG
915141 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
915167 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
915193 G
1 G
915194 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:917108 original size:711 final size:706
Alignment explanation
Indices: 915228--919626 Score: 3127
Period size: 717 Copynumber: 5.9 Consensus size: 706
915218 TTTCTTCGTT
* * * * *
915228 GGAGCATCACCAGAGAACCTGACCGGTGGCATTGGTGTTCCGGCGATCGAGGGGGCCGGAGGGGG
1 GGAGCATCGCCGGAGAACCTGACCGG-GACATTGGGGTTCCGACGATCG-GGGGG-C--AGGGGG
* * *
915293 TGTGTGCA-A-ATGATGTGTGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
61 -GTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTA
* * *
915356 TCAAACCTCAAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAG
125 TCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
915421 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGT
189 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
*
915486 TTTTAGCT-AATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
254 TTTTAGCTGAA-TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACTTCTACCAAGTTTGGGG
* * * * **
915550 ACAAAACTCTTTTCAAAACAATTTTGAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAA
318 ACAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
*
915615 AATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
383 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
915680 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
448 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
**
915745 CTATCGATCCACGGCTTGCGCATCCTATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCC
513 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCG-CT---
* *
915810 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCTCAGCCTAAGATCAGACCAGACC
570 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA-TTCCCAGTCTAAGATC-GACCAGACC
* * * *
915875 GAGGGTTGCGGCAGCACATGCTGGGCCCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGC
633 GAGGGTTACGGCAGCACATACTGGGCCCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGC
*
915940 ACCATCGTC
698 ACCATCGCC
* * * * *
915949 GGAGCATCGCCGGAGAACCTG-TCGGTAGCATTGGGGTTCTGATGATCGGGGGGGCCGGGGGGTG
1 GGAGCATCGCCGGAGAACCTGACCGGGA-CATTGGGGTTCCGACGATC-GGGGGGCAGGGGGGTG
* *
916013 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCTATCAA
64 TGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAA
*
916078 ACCTCGAGAACTCACACCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
129 ACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
916143 AAAGTGTCTGAAATGCGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
194 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * ** *
916208 GCTGAATTTTTTTTTACATGCCAATAAAAATACAAGGATCACTTCTACCAAGTTTGTTGCCAAAA
259 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACTTCTACCAAGTTTGGGGACAAAA
* * *
916273 CTCCTTCCGAAAAAATTTTAAAAAAT-CCGAAACCGCAAAAAGTTTCATAAATCGTGAAAAATAG
324 CTCCTTCCAAAAAAATTTTAAAAAATCCCG-AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
* * * *
916337 AAAACGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAGGGGACCATTGTGTGAATTTACAT
388 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*
916402 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATC
453 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
916467 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTCATTTCATC
518 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCTCGTTTCGTC
* *
916532 GGTTGGCTTAGGCATACGGAGTTCCTTCCCAATCTAAGATCGACCAGACCGAGGGTTACGGCAGC
583 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGACCAGACCGAGGGTTACGGCAGC
*
916597 ACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCC
648 ACATACTGGGCCCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCC
* *
916656 GGAGCATCGTCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATTGGGGGAGCTAGGGGGGT
1 GGAGCATCGCCGGAGAACCTGACCGG-GACATTGGGGTTCCGACGATCGGGGG-GC-AGGGGGGT
* * *
916721 GTGCACACATGATGTGCGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCTTATCCCTTGTCA
63 GTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCA
*
916786 AACCTTGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
128 AACCTCGAGAACTCACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* **
916851 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTCC
192 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
916916 TAACTGAATTTTTTTGTGCACGCCAAAACAAAATACAAGGATCACTTCTACCAAGTATGGGGGCA
257 TAGCTGAATTTTTTTGTGCATGCCAAAA-AAAATACAAGGATCACTTCTACCAAGTTTGGGGACA
* *
916981 AATCTCCATCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
321 AAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
*
917046 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTAC
386 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*
917111 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTA
451 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * *
917176 TCGATCTACGGCTTGCGCATCCCGCCTCTCTAGCCGGTGTAGTGCCCGCCCGCCCGCTCGTTTCG
516 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCTCGTTTCG
* * ** * *
917241 TCGGTTGGCTTAGGCATACGTAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTATGGT
581 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCGACCAGACCGAGGGTTACGGC
* * * * * * *** * * **
917306 AGCAGGAT--TGGTAGCACGTAG-AGTGAGACCCAGCCGAT-CCCCGGCTTGC-GCATC-CCGC-
645 AGCA-CATACTGG--GCCCG-GGCA-TGTG---CTG--G-TGCCGCATTTTTCTTCATCGGGGCA
*
917364 CCCTCTAGCC
699 CCATC--GCC
** * **** ** * * ** * **
917374 GATTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG-CATACGGAGTTCATTACCAGTCTA
1 G---GAGC-ATCGC-CG---G---AG-AACCTGAC-CGGGACAT-TGGGGTTC-CGACGA-TCGG
* *** * * * * * * * * * * * *
917438 AGCATACGGAGTTCATCCCCAGTCTAAGATCAGATCGAAACCAAGGGTTACGGCAGCACATGCTG
50 GGGGCAGGGGGGT-GTGCACA--C-ATGAT--G-T-G---CGATGGG-TGCTG--GTAC-T--T-
* * * * * * * ** * * * **
917503 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTGTCGGA
97 GGC-C---CTTAT-ATTG-GCCCCCTATCCCTT-AT-----CA--AACCTC-GAG-A-ACTC--A
* * * ** * * * *** * ** * * *
917568 GA-ACCTGATCGGCGCCA-TTGAGGTTTCGATGATCGGGGGGGCCGGGCGGGGT-GTGC-GTACA
143 CACCCCTTA-AAGAG-CATTTGAGATTT---T-A-CAGGTTTG-C-TGC-CAGTAG-CCATTAAA
* ** ** *
917629 -TGATGTGCGATGGGTG-CTGGTACTTGGCCCTT-AAATTGGCCCCCTATCCCTCATCAAACCTC
197 GTG-TCTGAAATGGG-GAC----ACTT---TTTTCAAA-TGG-----------TCA-CAAA-ATC
** ** ** **** **
917691 GAGAACTCACACCCCCTG-AAAGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCC-ATTAA
239 TTG---T-ACACTTCGAGTTTTTAGC--T-GA-ATTTT-----TTTG-TG-CA-T-GCCAAAAAA
* * * ** * ** *
917754 AGTGTCTGAAATGGGGA-CACTTTTTTCAA--ATGGTCACAAAATCTTGTACACTTCGAGTTTTT
287 AAT-AC---AA---GGATCACTTCTACCAAGTTTGGGGACAAAA-C---T-C-CTTCCA------
*** * * * ** *
917816 AGCTGAATTTTTTTGTGCATGCCAAAAAAAACACAAGGATCACGTCTACCAAGCTTGGGGCCAAA
333 A----AA--AAATT-T---T----AAAAAATC-C--CGAAC-CG--TAAAAAG-TT----TCAAA
* * * * ** *** *** * ***
917881 ACTCCTTCCGGAAAAATTTTAAAAAATCTCAAACTGTAAAAAGTTTTGAAA-ATCA--TGAAAAA
373 AAT-CGT---GAAAAA---TAGAAAA-C-GAGTC-GT--CTTGCCATGAAACTTCACGTGAAGGC
* * * * ** * * * *
917943 TAGAAAACGAGTCGTC-TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTT
426 T---TAA-GGGAC--CATTG-TATG-AA-TT--T-ACAAGCCATAA---A--AATG---GCA-TT
** * * **
918007 ACCA-GCCATAAAAATG--GCAT-TGGCACGTAGAAATACGAAGATGTTCCTAAACC-CGCCTAC
470 GGCATG-CAGAAATATGAAG-ATGT-GC-C-T---AA-AC--CCA----CCT--ACCAC-CCTA-
* *
918067 CACCTTATCGATCAACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCTCGCC
516 -------TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCT----
* * *
918132 CGCTCGTTTCATCGGTTCGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
570 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGACCG
** * * *
918197 AGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCA
634 AGGGTTACGGCAGCACATACTGGGCCCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCA
*
918262 CCATCGTC
699 CCATCGCC
* * * * *
918270 GGAGCATTGCCAGAGAACCTGACCGACGG-CATTGGGGTTCTGGCGATCGGGGGGGC-CGGGGGT
1 GGAGCATCGCCGGAGAACCTGACCG--GGACATTGGGGTTCCGACGATC-GGGGGGCAGGGGGGT
* * *
918333 GTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCG
63 GTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCA
*
918398 AACCTCGAGAACTAACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
128 AACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
918463 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
193 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * * *
918528 AGCTGAATTTTTTTGTGCATGCCAACAAAAACATAAGGATCACATCTACCAAGCTTGGGG-CAAA
258 AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACTTCTACCAAGTTTGGGGACAAA
* * * *
918592 AATCCTTCCAAAAAAATTTTAAAAATTCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAG
323 ACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
918657 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
388 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * *
918722 GCCA-CAAAATGGCATTGGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCATATC
453 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * *
918786 GATCCACGGCTTGCGCAT-CCATCTCTCT----GGC-T-G-G--CGCACGCACGCTCATTTCGTG
518 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCTCGTTTCGTC
* * * *** * * * *
918841 GGTTGACTTAGGCGTACGGAGTTCATTCTCAGTCTAAGATCGGATTGGAACGAGGGTTGCAGCAA
583 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTTACGGCAG
* * * * * * * *
918906 AACATGCTGGGCTCGAGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGCAGCATCACC
647 CACATACTGGGCCCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCC
* * * * *
918966 GAAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATAAGGGGGGTCGGAGGGGG
1 GGAGCATCGCCGGAGAACCTGACCGG-GACATTGGGGTTCCGACGAT-CGGGGGG-C--AGGGGG
* * ** * *
919031 GTGTGCACACATGATGTCCGTTGGGTGCCAGTACTTGGACCTTATATTGGCCCCCTATCCCTCAT
61 GTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTAT
*
919096 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGC
126 CAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
919161 CATTAATGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTT
190 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * * *
919226 TTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCA-TGTTTACGAAGTTTGGGGC
255 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACT-TCTACCAAGTTTGGGGA
** *
919290 CAAAACTCCTTCCAAAAAAATTTTAAAAAATCTTGAACCGTAAAATGTTTCAAAAATCGTGAAAA
319 CAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
* * *
919355 GTAGAAAATGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
384 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
919420 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGGAGATGCGCCTAAACCCACCTACCACCC
449 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
919485 TATCGAACCACGGCTTGCTCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCTCTCGCCC
514 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG----CT----C
* * *
919550 GCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGA
571 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCGACCAGACCGA
*
919615 GGGTTATGGCAG
635 GGGTTACGGCAG
919627 TAGGATCGGC
Statistics
Matches: 2848, Mismatches: 530, Indels: 600
0.72 0.13 0.15
Matches are distributed among these distances:
694 1 0.00
695 1 0.00
696 159 0.06
697 1 0.00
700 86 0.03
701 162 0.06
702 131 0.05
703 72 0.03
704 10 0.00
705 3 0.00
707 102 0.04
708 37 0.01
709 131 0.05
710 147 0.05
711 310 0.11
712 27 0.01
713 21 0.01
714 4 0.00
716 13 0.00
717 390 0.14
718 84 0.03
719 9 0.00
720 27 0.01
721 84 0.03
722 3 0.00
723 2 0.00
724 1 0.00
726 3 0.00
727 2 0.00
729 4 0.00
730 17 0.01
731 21 0.01
732 8 0.00
733 3 0.00
734 4 0.00
735 3 0.00
736 1 0.00
737 2 0.00
738 1 0.00
740 1 0.00
741 9 0.00
742 4 0.00
744 5 0.00
745 3 0.00
746 4 0.00
747 4 0.00
748 5 0.00
749 9 0.00
750 3 0.00
751 2 0.00
752 10 0.00
753 3 0.00
754 15 0.01
755 2 0.00
757 6 0.00
760 4 0.00
761 6 0.00
762 3 0.00
763 3 0.00
764 1 0.00
765 7 0.00
766 15 0.01
767 4 0.00
768 2 0.00
769 4 0.00
770 1 0.00
771 4 0.00
772 9 0.00
773 15 0.01
774 4 0.00
776 1 0.00
777 4 0.00
779 4 0.00
780 6 0.00
782 2 0.00
786 1 0.00
791 3 0.00
792 9 0.00
793 4 0.00
794 1 0.00
796 6 0.00
797 14 0.00
798 6 0.00
799 7 0.00
800 5 0.00
802 3 0.00
803 5 0.00
804 2 0.00
805 6 0.00
806 6 0.00
807 6 0.00
808 2 0.00
809 3 0.00
811 15 0.01
812 3 0.00
813 10 0.00
814 9 0.00
815 5 0.00
816 1 0.00
817 4 0.00
818 3 0.00
819 4 0.00
820 3 0.00
823 1 0.00
827 2 0.00
829 2 0.00
830 1 0.00
831 5 0.00
832 3 0.00
833 1 0.00
834 4 0.00
837 11 0.00
838 16 0.01
839 3 0.00
840 7 0.00
841 3 0.00
842 1 0.00
843 5 0.00
844 4 0.00
845 12 0.00
846 4 0.00
847 1 0.00
848 7 0.00
849 5 0.00
850 4 0.00
852 7 0.00
855 6 0.00
856 1 0.00
857 8 0.00
858 10 0.00
859 5 0.00
860 10 0.00
861 3 0.00
862 2 0.00
863 5 0.00
864 5 0.00
865 3 0.00
867 2 0.00
868 10 0.00
870 3 0.00
871 6 0.00
873 3 0.00
874 1 0.00
875 3 0.00
876 7 0.00
877 13 0.00
878 5 0.00
879 1 0.00
881 6 0.00
882 9 0.00
883 4 0.00
884 11 0.00
885 6 0.00
888 4 0.00
889 1 0.00
890 7 0.00
891 1 0.00
892 2 0.00
893 4 0.00
894 1 0.00
895 6 0.00
896 7 0.00
897 4 0.00
898 52 0.02
900 4 0.00
901 8 0.00
902 70 0.02
903 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (706 bp):
GGAGCATCGCCGGAGAACCTGACCGGGACATTGGGGTTCCGACGATCGGGGGGCAGGGGGGTGTG
CACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAAC
CTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACTTCTACCAAGTTTGGGGACAAAACT
CCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCTCGTTTCGTCGGT
TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGACCAGACCGAGGGTTACGGCAGCACA
TACTGGGCCCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCC
Found at i:917449 original size:26 final size:26
Alignment explanation
Indices: 917413--917465 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
917403 GTTGACTTAG
*
917413 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
*
917439 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
917465 G
1 G
917466 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAGTCTAA
Found at i:918519 original size:712 final size:712
Alignment explanation
Indices: 917439--919626 Score: 3145
Period size: 712 Copynumber: 3.1 Consensus size: 712
917429 ACCAGTCTAA
* * * *
917439 GCATACGGAGTTCATCCCCAGTCTAAGATCAGATCGAAACCAAGGGTTACGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCAGACCGAGGGTTACGGCAGCACATGCTGG
917504 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTGTCGGAG
* * * ** **
917569 AACCTGATCGGCGCCATTGAGGTT-TCGATGATCGGGGGGGCCGGGCGGGGTGTGCGTACATGAT
130 AACCTGACCGGCGGCATTGGGGTTCT-GGCGATCGGGGGGGCC--G-GGGGTGTGCACACATGAT
*
917633 GTGCGATGGGTGCTGGTACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
917698 CACACCCCCTGAAAGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
917763 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* **
917828 TTGTGCATGCCAAAAAAAACACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCGGA
386 TTGTGCATGCCAACAAAAACACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCAAA
* * ** *
917893 AAAATTTTAAAAAATCTCAAACTGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
451 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
917958 CTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACCAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * * *
918023 GCATTGGCACGTAGAAATACGAAGATGTTCCTAAACCCGCCTACCACCTTATCGATCAACGGCTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTT
918088 GCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCTCGCCCGCTCGTTTCATCGGTTCGCT
646 GCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCTCGCCCGCTCGTTTCATCGGTT-GCT
918153 TAG
710 TAG
* * **
918156 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
918221 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATTGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTGTCGGAGA
*
918286 ACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGTGTGCACACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGTGTGCACACATGATGTGCG
* * *
918351 ATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCGAACCTCGAGAACTAACA-
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
918415 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
918480 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
918545 CATGCCAACAAAAACATAAGGATCACATCTACCAAGCTTGGGG-CAAAAATCCTTCCAAAAAAAT
391 CATGCCAACAAAAACACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCAAAAAAAT
* *
918609 TTTAAAAATTCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
456 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
918674 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-CAAAATGGCATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
918738 GGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCA
586 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCA
* * * * * *
918803 T-CCATCTCTC---T-GGC----TG---G--CGCACGCACGCTCATTTCGTGGGTTGACTTAG
651 TCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCTCGCCCGCTCGTTTCATCGGTTG-CTTAG
* * * *** * * * **
918852 GCGTACGGAGTTCATTCTCAGTCTAAGATCGGATTGGAACGAGGGTTGCAGCAAAACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * ** * *
918917 CTCGAGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGCAGCATCACCGAAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTGTCGGAGA
* * **
918982 ACCTGACCGGCGGCATTGGGGTTCCGGCGATAAGGGGGGTCGGAGGGGGGTGTGCACACATGATG
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGAT--CGGGGG--GGCCGGGGGTGTGCACACATGATG
* * ** *
919047 TCCGTTGGGTGCCAGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
919112 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAATGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
919177 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGATTTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
919242 TGTGCATGCCAACAAAAATACAAGGATCATGTTTACGAAGTTTGGGGCCAAAACTCCTTCCAAAA
387 TGTGCATGCCAACAAAAACACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCAAAA
* * * * *
919307 AAATTTTAAAAAATCTTGAACCGTAAAATGTTTCAAAAATCGTGAAAAGTAGAAAATGAGTAGTC
452 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
919372 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
919437 CATTGGCATGCAGAAATATGGAGATGCGCCTAAACCCACCTACCACCCTATCGAACCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTG
* *
919502 CTCATCCCGTCTCTCTGG-CTGGCGTAGTGCCCGCCCGCCCTCTCGCCCGCTCGTTTCATCAGTT
647 CGCATCCCGTCTCTCTGGTC-GGCGTAGTGCCCGCCCG----CTCGCCCGCTCGTTTCATCGGTT
919566 GGCTTAG
707 -GCTTAG
* *
919573 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTATGGCAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAG
919627 TAGGATCGGC
Statistics
Matches: 1306, Mismatches: 136, Indels: 54
0.87 0.09 0.04
Matches are distributed among these distances:
695 1 0.00
696 162 0.12
698 6 0.00
700 82 0.06
701 164 0.13
702 130 0.10
703 71 0.05
704 8 0.01
705 3 0.00
706 1 0.00
708 3 0.00
709 8 0.01
710 69 0.05
711 126 0.10
712 170 0.13
713 81 0.06
714 1 0.00
715 1 0.00
716 121 0.09
717 33 0.03
721 64 0.05
722 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (712 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGTGTGCACACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAACACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCAAAAAAAT
TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCTCGCCCGCTCGTTTCATCGGTTGCTTAG
Done.