Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 40 of 129
Found at i:5396731 original size:26 final size:26
Alignment explanation
Indices: 5396695--5396744 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
5396685 AACTTAGGCA
5396695 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGGAGTTCATTCCCAGTCTAAGCT
5396721 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
5396745 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:5397630 original size:26 final size:26
Alignment explanation
Indices: 5397594--5397646 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5397584 GTTGACTTAG
5397594 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5397620 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5397646 G
1 G
5397647 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5400542 original size:722 final size:718
Alignment explanation
Indices: 5399043--5400680 Score: 2570
Period size: 722 Copynumber: 2.3 Consensus size: 718
5399033 GGACCATTGT
* *
5399043 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCA-CTGACCAGCCTATCGATCCAC
1 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT-ACCACCCTATCGATCCAC
* * *
5399107 GACTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCGA-CCCGCCCGCCCGCTCGTTTCG
65 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGACCCCG-CCGCCCGCTCGTTTCG
* * * * * *
5399171 TCGGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTCAGATCGGACCGGACCGAGGGTCGTGGC
129 TCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGAC
* * * *
5399236 AGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCATCGAGGCAGCATCGTCGGA
194 AGCAAATGCTAGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCATCGAGGCACCATCATCGGA
* * *
5399301 GCATCGTCGGAGAACCTGATCGGTGGCATTGGGGTTCCGACGATTGAGGGGGCCAGGGGGTGTGC
259 GCATCGTCGGAGAACCTAACCGGTGGCATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGTGTGC
5399366 GCACATGATGTGCAATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
324 GCACATGATGTGCAATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
5399431 TCGAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGATAGTAGCCATTAA
389 TCGAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGATAGTAGCCATTAA
5399496 AGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGC
454 AGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGC
5399561 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAAGTTGGGGCCAAAAAT
519 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAAGTTGGGGCCAAAAAT
* * * * *
5399626 ACTTTCAAAAAAATTTTAAAAAATCCCGAACCTTAAAAAGTTTCAAAAATCGTGAAAAATAGAAC
584 ACTTCCAAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* *
5399691 ACAAGTCGTCTTGCCATGAAACTCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
649 ACAAGTCGTCGTGCCATGAAACTCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCA
5399756 ATAAA
714 ATAAA
* * * *
5399761 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAACCACCTACCACCTTATCGATACACG
1 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* *
5399826 GCTTACACATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGATCGCCCGGCCGCCCGCTCGTTT
66 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCGA-C-CCC-GCCGCCCGCTCGTTT
* *
5399891 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTGCG
127 CGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCG
* * * * *
5399956 ACAGCAAATGCTAGGCTCGGGCATGTGTTGGTGTCACATTTTTCTTCGTCGGGGCACCATCATCG
192 ACAGCAAATGCTAGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCATCGAGGCACCATCATCG
* *
5400021 GAGCATCGTCGGAGAACTTAACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGT
257 GAGCATCGTCGGAGAACCTAACCGGTGGCATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGTGT
*
5400086 GCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
322 GCGCACATGATGTGCAATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
5400151 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGATAGTAGCCATT
387 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGATAGTAGCCATT
*
5400216 AAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACATTTTGAGTTTTTA
452 AAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTA
** *
5400281 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCTTGTCTACC-ATGTTTGGGGCCAAA
517 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAAG-TTGGGGCCAAA
* * * *
5400345 ACTTCTTCCGAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAG
581 AATACTTCCAAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
* * *
5400410 AAAACGAGTCGTCGTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAA
646 AAAACAAGTCGTCGTGCCATGAAACTCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
5400475 GCAATAAA
711 GCAATAAA
** * *
5400483 AATTTCATTGGCACGTAGAAATATGACGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
1 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
5400548 GCTTGCGCATCCCG-CTTCTCTGACTGACGTAGTGCCCGTCCG-CCCAC-CCGCCCGCTCCTTTC
66 GCTTGCGCATCCCGTC-TCTCTGGCCGACGTAGTGCCCG-CCGACCC-CGCCGCCCGCTCGTTTC
* * *
5400610 ATCGATTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACC-AGACCGAGGGTTGCG
128 GTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCG
5400674 ACAGCAA
192 ACAGCAA
5400681 GATCAGCAAC
Statistics
Matches: 839, Mismatches: 71, Indels: 20
0.90 0.08 0.02
Matches are distributed among these distances:
717 1 0.00
718 167 0.20
719 8 0.01
720 2 0.00
721 3 0.00
722 657 0.78
723 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (718 bp):
AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGACCCCGCCGCCCGCTCGTTTCGTC
GGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGACAG
CAAATGCTAGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCATCGAGGCACCATCATCGGAGC
ATCGTCGGAGAACCTAACCGGTGGCATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGTGTGCGC
ACATGATGTGCAATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGATAGTAGCCATTAAAG
TGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG
AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAAGTTGGGGCCAAAAATAC
TTCCAAAAAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
AAGTCGTCGTGCCATGAAACTCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAAT
AAA
Found at i:5400823 original size:26 final size:26
Alignment explanation
Indices: 5400783--5400835 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5400773 GTTGACTTAG
*
5400783 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGAAGATCATTCCCAGTCTAA
*
5400809 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGATCATTCCCAGTCTAA
5400835 G
1 G
5400836 ATCAGAATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGATCATTCCCAGTCTAA
Found at i:5401701 original size:26 final size:26
Alignment explanation
Indices: 5401665--5401717 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5401655 GTTGACTTAG
*
5401665 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5401691 GCATACAGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5401717 G
1 G
5401718 ATCAAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5403571 original size:25 final size:25
Alignment explanation
Indices: 5403533--5403588 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
5403523 TGACTTAGGC
* **
5403533 ATACAGAGTCCATTCTTAGTCTAAG
1 ATACGGAGTCCATTCCCAGTCTAAG
*
5403558 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTCCATTCCCAGTCTAAG
5403583 AT-CGGA
1 ATACGGA
5403589 CTAGATCGGG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
24 4 0.15
25 23 0.85
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (25 bp):
ATACGGAGTCCATTCCCAGTCTAAG
Found at i:5404469 original size:26 final size:26
Alignment explanation
Indices: 5404433--5404485 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5404423 GTTGACTTAG
5404433 GCATACAGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
* *
5404459 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
5404485 G
1 G
5404486 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:5404866 original size:900 final size:898
Alignment explanation
Indices: 5402132--5406981 Score: 6587
Period size: 902 Copynumber: 5.4 Consensus size: 898
5402122 AGGCAAATTC
* * *
5402132 TCACAAAATCTTGTACACTTCGAGTTTCTAGTTGAATTTTTTTGTGCATGCCAATAAAAATACAA
1 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * *
5402197 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCAAAAAAATTTTAAAAAATCCCGAACCA
66 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCAAACCG
* * * * *
5402262 AAAAAAGTTTCAAAAATCATGAAAAATAGAAAA-GAAGTCCTCTTGCCACGAAACTTCACGTCAT
131 TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG-AGTCGTCTTGCCATGAAACTTCACGTGAA
* * * *
5402326 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAAATATAA
195 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG-TAGAAATATGA
* * * * * *
5402391 AGATGTGCGTAAACCCACATACCACTCTATCGATTCATGGCTTACGCATCCCGTCTCTCTGGCCG
259 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* *
5402456 ACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
324 GCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
** * * * * * * *
5402521 AGTCTAAGATCAGACCATACCGAGGGTTGCGACAGTAGGATCAGTAGCACACAGAAGGGGA-CCG
389 AGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
* * * * *
5402585 ATCGAACCCGGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCTCGTACGCTCGTTTCGTGA
454 ATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGG
* *
5402650 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCAAAGAT
519 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * **
5402715 T-----GGACCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTACATTTTTC
584 TGGACCGGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * ** * * * *
5402775 TTTGCCGGGGTGCCATTGCTGGAGCATCGCTGGAGAACCTGACCGGCGACATTGGGGTTCCAACG
649 TTCGTCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
* * * * * *
5402840 ATCGGGGGGGCGGGGGGTGTACGCACAAGATGCGCGGTGGGTACTGGTACTTGGCCCTTATATTG
714 ATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
5402905 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCC-TAAAGAGCATTTGAGATTTTACAG
779 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * *
5402969 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGATACATTTTTCAAATGG
844 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
*
5403024 TCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAACAAAAATACAA
1 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * * * *
5403088 GGATCACGACTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAGTTTTAAAAAATC-CCAACCA
66 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCAAACCG
* * *
5403152 CAAAACG-TTCTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
131 TAAAAAGTTTC-AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * *
5403216 GGCTTAAGGGACCATTGTATGAATTTACAGGCAATAAAAATGGCATTGGCATGTAGAAATATGAA
195 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAA
* * * * * *
5403281 GGTGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGCGTATCCCGTTTCTCTGGCTGA
260 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
5403346 CGTAGTGCCCGCCCGCCCGCCCG--C---TCGT---TT--C----G--T-C-G-GTTCATTCCCA
325 CGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * *
5403392 GTCTAAGATCTGACCGGACGGAGGGTTGTGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGA
390 GTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA
* * * * *
5403457 CCGATCCCCGGCTTGCACGTCCCGCCCCTCTGGCCGACTGAGCGCCCGCATGCTCATTTCGTGGG
455 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGG
* * ** *
5403522 TTGACTTAGGCATACAGAGTCCATTCTTAGTCTAAG-ATACGGAGTTCATTCCCAGTCTAAGATC
520 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
** * * * *
5403586 GGACTAGATCGGGGGTTACGGTAGCACATGCTGGGCTCGAGCATATGCTGGTGCCGCATTTTGTC
585 GGACCGGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT-TC
* * * *
5403651 TTTG-CTGGGGCACCATCGCTGGAGCATCGTCGGAGAACCTTACCGGCGGCATTGGGGTTCCGGC
649 TTCGTC-GGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
* * *
5403715 GATCGGGGGGGCTGGGGTGGGTATGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTAT
713 GATC-GGGGGGC-CGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
5403780 ATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTT
775 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
*
5403844 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAAACTTTTTTCAAATGG
840 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
**
5403903 TCACAAAATCTTGTACACTTCGAGTTTTGGGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
1 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * *
5403968 GGATCACGACTACCAAGTTCGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCAAACCG
66 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCAAACCG
* *
5404033 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAG
131 TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
5404098 GCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAGATATGAAG
196 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
* ** *
5404162 ATGTGCCCAAACGTACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGC
261 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
5404227 GTAGTGCCCTCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
326 GTAGTG----CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * *
5404292 CCAGTCTAAGATCAGACCGGACCAAGGGTTATGGTAGCAGGATCGGCAGCACGCAGA-GGGGACC
387 CCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
* * * * * * *
5404356 CGGTCGATCCTCGGCTTGCGCATCTCGCCCCTCTAGCCGGCTGAGCGCCCGCACGTTTGTTTCGT
452 CGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGT
* *
5404421 GGGTTGACTTAGGCATACAGAGTTCAATCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
517 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
5404486 ATTGGACCGGACCGAGGGTTATGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGTATTTT
582 ATTGGACCGGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* ** * * * *
5404551 TCTTCGTCGGGACACCATCGCCAGAGCATCGTCGGAGAACCTGACCGGCGGCAATGGGGTTTCGG
647 TCTTCGTCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA
* *
5404616 CGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCCATGGGTGCTGGTACTTGGCCCTTATAT
712 CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* ** * * * *
5404681 TGGCCCCCAATCCCTCATCAAATTTCAAGAACTCACACCCCCTTAGAGAGCATGTCAGATTTTAC
777 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
5404746 AGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
842 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
*
5404803 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
1 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* ** * * *
5404868 GGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAATCCCGAACCG
66 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCAAACCG
* *
5404933 TAAAAAGTTTAAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAG
131 TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
5404998 GCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGTATGTA-AAATATGAAG
196 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
*
5405062 ATGTGCCTAAACCCACCTTCCACCCTATCGATCCAC-GCTTGCGCATCCCGTCTCTCTGGCCGGC
261 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
*
5405126 GTAGTGCCCGCCCGCCCGCCTGCTCGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
326 GTAGTGCCCGCCCGCCCGCCCGCTCG----TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * * * *
5405191 CCAGTCTAAGATTAGATCAGACTGAGGGTTGCGGCAGCAGGATCGGTAGCATGCATATGGGGACC
387 CCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
* * * * * *
5405256 CGACCGATCTCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGTACGCTCCTTTCGT
452 CGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGT
* *
5405321 GGGTTGACTAAAGGCATACGGAGTTCATTCCCAGCCTAAGCATACGGAGTTCATTCCCAGTCTAA
517 GGGTTGACT-TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * *
5405386 G-TTCGGACCGGACCGAGGGTTACGGCAGCACATGTTGGGCTTGGGCATGTGCTGGTGCTGCATT
581 GATT-GGACCGGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * * ** *
5405450 TTTCTTCATCGAGGCACTATCGCCGGAGCATCGCCGGAGAACCTGACCGTTGACATTGGGGTTCC
645 TTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCC
*
5405515 GACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTA
710 GACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * *
5405580 TATTGGCCCCCTATTCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTT
774 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
5405645 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
839 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
5405705 TCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATACAA
1 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
** * *
5405770 GGATCACGTCTACCAAGTTTGGGGTGAAAAATCCTTCTAAAAAAATTTTAAAAAAT-TCAAAACC
66 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTC-AAACC
* *
5405834 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAACTTCACGTGAA
130 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * ** *
5405899 GGCTCAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCCATTGGCACACAGAAATATGAT
195 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAA
* * * **
5405964 GATGTGCCTAAACCCACCTACCACCCTATCGATCCTCGGCTTGTGCATCCCATCAGTCTGGCCGG
260 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
** * ** *
5406029 CGTTA-TGCCCGCCACGCCCGCTTGCTCATTTCGTCGGTTGGCTTAATCATACAGAGTTCATTCC
325 CG-TAGTGCCCGCC-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * *
5406093 CAGTCTAAGATCGGATCGGACTGAGGGTTGTGGCAGTAGGATCGGCAGCACCCAGAGGGGGACTC
388 CAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC
* ** * *
5406158 GATCGATCCCCGGCTTAGCGCATCGCGCCCCTCTGGCCTG-CTGAGCGCTTGCACTCTCGTTTCA
453 GATCGATCCCCGGCTT-GCGCATCCCGCCCCTCTGGCC-GACTGAGCGCCCGCACGCTCGTTTCG
* * * *
5406222 TGGGTTAACTTAGTCCTACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAA
516 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
5406287 GATCGAACCAGACCGAGGGTTGCGATAGCACATGCTGGGC-CCGGCATGTGCT-GTGCCTCATTT
581 GATTGGACCGGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA-TT
* *
5406350 TTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGAAGCTGACCGGGCGGCATT-GGGTTC
645 TTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACC-GGCGGCATTGGGGTTC
* *
5406414 CGACGATCGGGGGGCGGTGGGGGTGTTGCGCACAAT-ATGTGCGATGGGGTGCCGGGTACTT-GC
709 CGACGATCGGGGGGCCG-GGGGGTG-TGCGCAC-ATGATGTGCGAT-GGGTG-CTGGTACTTGGC
*
5406477 CC-TA-ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAG-GCATTTGA
769 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
5406539 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
834 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
5406604 TCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAA
1 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * *
5406669 GGATCACGTCTACCAAGCTAGGGGCCAAAACCCCTTCCAAAAAAATTTTAAAACAT-TCCAAACC
66 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCT-CAAACC
** ** * *
5406733 GCCAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTCGCCATTAAACTTCACGTGAA
130 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * *
5406798 GGCTTAAGGGACCATTGTATGAATTAACAAGCCATAAAAATAGCATTGGCACGCAGATAATATGA
195 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGA-AATATGA
* * * *
5406863 AGATGTGCCTAAACCCACCGACAAACCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCG
259 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* *
5406928 GCGTAGTGCCCGCCCGCCCACCCGCCCGTTTCGTCGGTTGGCTTAGGCATACGG
324 GCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
5406982 GGAACCTAAC
Statistics
Matches: 3496, Mismatches: 392, Indels: 133
0.87 0.10 0.03
Matches are distributed among these distances:
870 84 0.02
871 92 0.03
872 1 0.00
873 1 0.00
875 50 0.01
876 59 0.02
877 6 0.00
878 6 0.00
879 195 0.06
880 189 0.05
881 69 0.02
882 3 0.00
884 19 0.01
886 1 0.00
887 1 0.00
889 93 0.03
890 108 0.03
891 73 0.02
892 42 0.01
894 1 0.00
895 19 0.01
898 1 0.00
899 534 0.15
900 576 0.16
901 425 0.12
902 610 0.17
903 191 0.05
904 33 0.01
905 14 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCAAACCG
TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
GTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGAT
CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTG
GACCGGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
CGTCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
CGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
Found at i:5405366 original size:26 final size:26
Alignment explanation
Indices: 5405334--5405386 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5405324 TTGACTAAAG
5405334 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
5405360 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
5405386 G
1 G
5405387 TTCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:5406268 original size:26 final size:26
Alignment explanation
Indices: 5406238--5406287 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
5406228 AACTTAGTCC
*
5406238 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAATCTAAGCA
5406264 TACGGAGTTCATTCCCAATCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
5406288 ATCGAACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGCA
Found at i:5407759 original size:26 final size:26
Alignment explanation
Indices: 5407729--5407778 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
5407719 GACTTAGTCC
*
5407729 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAATCTAAGCA
5407755 TACGGAGTTCATTCCCAATCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
5407779 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGCA
Found at i:5409056 original size:734 final size:732
Alignment explanation
Indices: 5407646--5409152 Score: 2385
Period size: 734 Copynumber: 2.1 Consensus size: 732
5407636 ACAGAGGGGG
5407646 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCTGCTGAGCGCCTGCACTCTCGTTT
1 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCTGCTGAGCGCCTGCACTCTCGTTT
* *
5407711 CATGGGTTGACTTAGTCCTACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCT
66 CATGGGTTGACTTAGTCCTACGGAGTTCATACCCAGTCTAAGCATACAGAGTTCATTCCCAATCT
* * * * * * *
5407776 AAGATCGGACCGGACCGAGGGTTCCGATAGCACATGCTGGGCATGGGCATGTGCTTGTGCTGCAT
131 AAGATCAGACCGGACCAAGGGTTACGACAACACATGCTGGGCATGGGCATGTGCTGGTGCCGCAT
** * * *
5407841 TTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGTTCT
196 TTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACAGCATTGGGTTCC
**
5407906 GGCGATCGGGGGGGCCTGGGGGATGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCAT
261 GGCGATCGGGGGGGCAGGGGGGATGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCAT
* *
5407971 ATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACTCCCCCTTAAAGAGCGTTTGAGATT
326 ATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
5408036 TTCCAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCGAATGGTCAC
391 TTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCAC
*
5408101 AAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTGTGCATGCCAACAAAATTACAAGGAT
456 AAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * * **
5408166 CACGTCTACCAGGTTTGGGGCCAAATATCCTTCCAAAAAAATTTTAAAAAATCTTGAACCGCAAA
521 CACGACTACCAAGATTGGGGCCAAATAACCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAA
* *
5408231 AAGTTTTAAAAATCGTGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
586 AAGTTTTAAAAATCATGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTC
5408296 AAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGT
651 AAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGT
5408361 GCCTAAACCCACCTACC
716 GCCTAAACCCACCTACC
*
5408378 ACCCTATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCTGCTGAGCGCCTGCACTCTCGTTT
1 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCTGCTGAGCGCCTGCACTCTCGTTT
** * *
5408443 CATGGGTTGACTTAGTCCTACGGAGTTCATACGTAGTCTAAGCATACAGAGTTCATTCCCAGTTT
66 CATGGGTTGACTTAGTCCTACGGAGTTCATACCCAGTCTAAGCATACAGAGTTCATTCCCAATCT
*
5408508 AAGATCAGACCGGACCAAGGGTTACGGCAACACATGCTGGGC-TCGGGCATGTGCTGGTGCCGCA
131 AAGATCAGACCGGACCAAGGGTTACGACAACACATGCTGGGCAT-GGGCATGTGCTGGTGCCGCA
*
5408572 TTTTTCTTTACCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACAGCATTAGGGTT
195 TTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACAGCATT-GGGTT
* * *
5408637 CCGGTGATCGGGGGGTCGAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
259 CCGGCGATCGGGGGGGC-AGGGGGGATGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
5408702 CTTATATTGGCCCCTTATCCCTCATCAAACCTCGGGAACTCACACCCCCTTAAAGAGCATTTGAG
323 CATATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
**
5408767 ATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATCGGG-ACACTTTTTTCAAATGG
388 ATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT-GGGAACACTTTTTTCAAATGG
* * * *
5408831 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTTGCGTGCCAATAAAAATACA
452 TCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACA
* *
5408896 AGGATCATGACTACCAAGATTGGGGCCAAA-ACACCTT-CGAAAAAATTTTAAAAAATCCCGAAC
516 AGGATCACGACTACCAAGATTGGGGCCAAATA-ACCTTCCAAAAAAATTTTAAAAAATCCCGAAC
* *
5408959 GGCAAAAA-TTTTCAAAAATCATGAAGAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTG
580 CGCAAAAAGTTTT-AAAAATCATGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTG
* * ** *
5409023 AAGGCTCAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
644 AAGGCTCAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATG
5409088 AAGATGTGCCTAAACCCACCTACC
709 AAGATGTGCCTAAACCCACCTACC
* * *
5409112 ACCCGATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
1 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
5409153 GGCATAATGC
Statistics
Matches: 708, Mismatches: 60, Indels: 12
0.91 0.08 0.02
Matches are distributed among these distances:
731 1 0.00
732 231 0.33
733 23 0.03
734 396 0.56
735 57 0.08
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (732 bp):
ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCTGCTGAGCGCCTGCACTCTCGTTT
CATGGGTTGACTTAGTCCTACGGAGTTCATACCCAGTCTAAGCATACAGAGTTCATTCCCAATCT
AAGATCAGACCGGACCAAGGGTTACGACAACACATGCTGGGCATGGGCATGTGCTGGTGCCGCAT
TTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACAGCATTGGGTTCC
GGCGATCGGGGGGGCAGGGGGGATGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCAT
ATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
TTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCAC
AAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
CACGACTACCAAGATTGGGGCCAAATAACCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAA
AAGTTTTAAAAATCATGAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTC
AAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGT
GCCTAAACCCACCTACC
Found at i:5409389 original size:26 final size:26
Alignment explanation
Indices: 5409359--5409411 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5409349 GTTGACTTAG
*
5409359 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
5409385 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
5409411 G
1 G
5409412 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:5410288 original size:26 final size:26
Alignment explanation
Indices: 5410258--5410310 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5410248 GTTGACTTAG
*
5410258 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5410284 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5410310 G
1 G
5410311 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5411198 original size:26 final size:26
Alignment explanation
Indices: 5411162--5411213 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
5411152 TTGACTTAGA
5411162 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
5411188 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
5411214 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:5412253 original size:26 final size:26
Alignment explanation
Indices: 5412217--5412269 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5412207 GTTGACTTAG
*
5412217 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5412243 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5412269 G
1 G
5412270 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5412718 original size:26 final size:26
Alignment explanation
Indices: 5412689--5412741 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5412679 CAAAACTCCG
* *
5412689 ACCGAAAAAATTTTAAAAAATCTTGA
1 ACCGAAAAAAGTTTAAAAAATCATGA
* *
5412715 ACCGCAAAAAGTTTCAAAAATCATGA
1 ACCGAAAAAAGTTTAAAAAATCATGA
5412741 A
1 A
5412742 AAATAGAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.53, C:0.15, G:0.09, T:0.23
Consensus pattern (26 bp):
ACCGAAAAAAGTTTAAAAAATCATGA
Found at i:5413159 original size:26 final size:26
Alignment explanation
Indices: 5413122--5413174 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5413112 GTTGACTTAG
*
5413122 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
5413148 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
5413174 G
1 G
5413175 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:5413607 original size:905 final size:900
Alignment explanation
Indices: 5411341--5414677 Score: 4659
Period size: 905 Copynumber: 3.7 Consensus size: 900
5411331 CGTGGGTTGA
* * *
5411341 CTAAGGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCCAGGATTGCGA-TAGCACAT
1 CTAA-GCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGC-ACCAGCACAT
* * * *
5411405 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGTCAGAGCATCGC
64 GCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCAC
* * * *
5411470 CGGAGAACTTGACCGGTGGCATTGGGGTTCCGGCGATCG-GGGGCCCGAGGGGGTGTGCGCACAT
129 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCG-GGGGGTGTGCGCACAT
* *
5411534 GATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTTGAGA
193 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
5411599 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
258 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
5411664 TGAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTGTTTAGCTGAATT
323 TAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
5411729 TTTTTGTGAATGCC-AACAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCC
388 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* *
5411793 GAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAA-AAAAAACGGGT
453 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGT
* * * * *
5411857 CGTCTTGCCATGCAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAGA
518 CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAA
* *
5411922 ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
583 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
5411987 CTTGCGCATCCCGTCTCTCTAGATGGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTG
648 CTTGCGCATCCCGTCTCTCTAGATGGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTG
* * * * * *
5412052 GCTTAGGCATA-TGCAGTTCTTTCCCAGTCTAAGATCGGA-CTGAACTGAGGGTTGCGGCAGTAA
713 GCTTAGGCATACTG-AGTTCATTCCCAGTCTAAGATCGGATC-GGACTAAGGGTTGTGGCAGCAG
* * * * * * * *
5412115 GATC-GACAGCATGCAGA-AGGGAACCTGATCGATCCCTGATTTGTGCATCCTGCCACTCTGGCC
776 GATCAG-TAGCACGCAGAGAGGG-ACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCC
* ** * *
5412178 A-GCTGAGCGCCTGCACGCTAATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGT
839 AGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGT
* * * * *
5412239 CTAAGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACCGAGGGTTGCAGCAGCACATGC
1 CTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCACCAGCACATGC
* * * *
5412304 TGGTCTCGGGCATGTGTTCGTGCCACATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCACCG
66 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCG
* * * *
5412369 GAGAACCTAACCGGCGGAATTGGGGTTCCGATGATCGGGGGGGCCAGGGGGGGTGTGCGCACATG
131 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCC--GGGGGGTGTGCGCACATG
*
5412434 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
194 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
* *
5412499 CTCACACCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTG-CTGTAGCCATTAAAGTGTCT
259 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * * *
5412563 GAATTGGGGACACTTTTTGCAAATGGTTACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTT
324 AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
** * * **
5412628 TTTTGTGCACACCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAACTCCGACCG
389 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
** *
5412693 AAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
454 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTC
* * *
5412758 GTCTTGCCATGAAAGTTCACGTGAAGGCTTAAGGCACCATGGTATGAATTTACAAGCCATAAAAA
519 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAA
* *
5412823 TGGAATTGGCATGCAGAAATATGACA-ATGTGCCTAAACCCACCAACCACCCTATCGATCCACGG
584 TGGCATTGGCATGCAGAAATATGA-AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * ** ** *
5412887 CTTGCGCATCCCGTCACTTTGGCCGATGTAGTGCCCGCCCGCCTGCCCGCCCGGTCATTTCGTCG
648 CTTGCGCATCCCGTCTCTCTAGATGGCGTAGTGCCCGCCCGCCTGCCCG--C--TCGTTTCGTCG
* *
5412952 GTTGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGACCGGATCGGACCAAGGGTTGTGGCAGC
709 GTTGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGATCGGATCGGACTAAGGGTTGTGGCAGC
* *
5413017 AGGATCAGTAGCACGCAGAGAGGGACCCGACCGATCCCCGACTTGCCCATCCTGCCCCTCTAG-C
774 AGGATCAGTAGCACGCAGAGAGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCC
* *
5413081 AGGCTGAGCGGCCCGGACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGT
839 AGGCTGAGC-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGT
* ** *
5413144 CTAAGCATACGGAGTTCATTCCCAATCTAAGATCAAATCGGACCGAGGGTTGCGA-CAGCACATG
1 CTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGC-ACCAGCACATG
* * * *
5413208 TTGGGCTCGGGCATGTGCTGTTGTCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACC
65 CTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACC
* **
5413273 AGAGAACCTGACCGGTAGCATTGGGGTTCCGACGATCGAGGGGGCCGGGCGGGTGTGCGCACATG
130 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGG-GGGTGTGCGCACATG
**
5413338 ATGTGCGATGGGTGCTGGTACTTGGCTTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
194 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
* *
5413403 CTCACACCCACTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
259 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
5413468 AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
324 AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
5413533 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTTCTTCC-
389 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* ** *
5413597 AAATAAATTTTAAAAAATCTCGAACCGTGAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGT
454 AAA-AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGT
* * * * *
5413662 CATCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCATAAGCTATAAAA
518 CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAA
5413727 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
583 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
5413792 CTTGCGCATCCCGTCTCTCTAGATGGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTG
648 CTTGCGCATCCCGTCTCTCTAGATGGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTG
* * *
5413857 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGATCGGACTAAAGGTTGTGGCAGCAGGA
713 GCTTAGGCATACTGAGTTCATTCCCAGTCTAAGATCGGATCGGACTAAGGGTTGTGGCAGCAGGA
* * * * * * * * *
5413922 CCAGTAGCACACAG-G-CGGACTCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTC-GAC
778 TCAGTAGCACGCAGAGAGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCAGGC
*
5413984 TGAGCGCACGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGT
843 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGT
* * * * * *
5414042 CTAAGCATACAAAGTTAATTCCCAGTCTATGATCGGACCAGACTGAGGGTTGCACCAGCACATGC
1 CTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCACCAGCACATGC
* ** ** * * *
5414107 TGGGCTTGGGCATGTTTTGGTGCCGTATTTCTCTCCGTCGGGGCACGATCGTCGGAGCATCACCG
66 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCG
* * *
5414172 GAGAACCTGACCGGCGGCATTGGGGTT-CGGCGATCGAGGGTGTC--GGGGTGTGCGCACATGAT
131 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGAT
*
5414234 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG------------C--C---CC-T----A-T
196 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
*
5414276 ------CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTAA
261 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
* *
5414335 AATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTT
326 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * ** *
5414400 TTGTTCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAACCCCTTCCGAA
391 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
5414465 AAAATTTTAAAAAATCCCGAACCG-TAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCAC
456 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCAT
5414529 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATG
521 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATG
5414594 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
586 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
5414659 GCGCATCCCGCCTCTCTAG
651 GCGCATCCCGTCTCTCTAG
5414678 CCGGCTGAGC
Statistics
Matches: 2185, Mismatches: 229, Indels: 84
0.87 0.09 0.03
Matches are distributed among these distances:
864 179 0.08
865 195 0.09
866 3 0.00
871 1 0.00
872 1 0.00
876 1 0.00
877 2 0.00
880 1 0.00
882 1 0.00
894 49 0.02
895 1 0.00
896 1 0.00
897 155 0.07
898 278 0.13
899 257 0.12
900 172 0.08
901 87 0.04
902 1 0.00
903 6 0.00
904 237 0.11
905 556 0.25
906 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
CTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCACCAGCACATGC
TGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCG
GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGAT
GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCAT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
GCGCATCCCGTCTCTCTAGATGGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACTGAGTTCATTCCCAGTCTAAGATCGGATCGGACTAAGGGTTGTGGCAGCAGGATCA
GTAGCACGCAGAGAGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCAGGCTGA
GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGT
Found at i:5414056 original size:26 final size:26
Alignment explanation
Indices: 5414020--5414070 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5414010 GTTGACTTAG
* *
5414020 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTAATTCCCAGTCTAA
5414046 GCATACAAAGTTAATTCCCAGTCTA
1 GCATACAAAGTTAATTCCCAGTCTA
5414071 TGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.27
Consensus pattern (26 bp):
GCATACAAAGTTAATTCCCAGTCTAA
Found at i:5416280 original size:26 final size:26
Alignment explanation
Indices: 5416246--5416298 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5416236 ATTGACTTAG
* * *
5416246 GCATGCGGAGTTCATTCCTAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5416272 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5416298 G
1 G
5416299 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5417071 original size:26 final size:26
Alignment explanation
Indices: 5417035--5417087 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5417025 GTTGACTTAG
5417035 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5417061 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5417087 G
1 G
5417088 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5420529 original size:26 final size:26
Alignment explanation
Indices: 5420493--5420545 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5420483 GTTGACTTAG
5420493 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* * *
5420519 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
5420545 G
1 G
5420546 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:5422285 original size:26 final size:26
Alignment explanation
Indices: 5422249--5422301 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5422239 GTTGACTTAG
5422249 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
5422275 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5422301 G
1 G
5422302 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5422471 original size:13 final size:13
Alignment explanation
Indices: 5422453--5422492 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
5422443 GCCGGAGGGG
5422453 TGTGCGCATATGA
1 TGTGCGCATATGA
5422466 TGTGCG-ATCA--A
1 TGTGCGCAT-ATGA
5422477 TGTGCGCATATGA
1 TGTGCGCATATGA
5422490 TGT
1 TGT
5422493 TCGATGAGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 8
0.74 0.00 0.26
Matches are distributed among these distances:
11 8 0.35
12 4 0.17
13 11 0.48
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.33
Consensus pattern (13 bp):
TGTGCGCATATGA
Found at i:5426323 original size:26 final size:26
Alignment explanation
Indices: 5426287--5426339 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5426277 GTTGAATTAG
*
5426287 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5426313 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5426339 G
1 G
5426340 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5428106 original size:26 final size:26
Alignment explanation
Indices: 5428077--5428127 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5428067 TGACTTAGGG
5428077 ATATGGAGCTCATTCCCAGTCTAAGC
1 ATATGGAGCTCATTCCCAGTCTAAGC
*
5428103 ATATGGAGTTCATTCCCAGTCTAAG
1 ATATGGAGCTCATTCCCAGTCTAAG
5428128 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATATGGAGCTCATTCCCAGTCTAAGC
Found at i:5428547 original size:870 final size:863
Alignment explanation
Indices: 5424765--5429768 Score: 5305
Period size: 865 Copynumber: 5.7 Consensus size: 863
5424755 GGCCTTAATA
* *
5424765 GCCCCCTATCCCTCATCCAAACCTCGGAGAACTCACACCCCCTTAAAGAGCATTTGGACATTTTA
1 GCCCCCTATCCCTCAT-CAAACCTC-GAGAACTCACACCCCCTAAAAGAGCATTT-GAGATTTTA
* *
5424830 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAAAGGTCACAAA
63 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * *
5424895 ATCTTGTACACTTCCAGTTTTTGGCTGACTTTTTTTATGCGTGCCAAAAAAAATACAGGGATCAC
128 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCAC
** * ** *
5424960 GTCTACCAAGTTTGGGGTGAAAACTCCTTCCAAAAAAATTTTAAAAAATCTTGAACCGCAAAAAG
193 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
*
5425025 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
258 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG
* *
5425090 GGACCATTGTATCAATTTACAAGCCATAAAAAT-GCATTGGCACACAAAAATTATGAAGATGTGC
323 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-GC-CACAGAAA-TATGAAGATGTGC
* *
5425154 CTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
385 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
* * * *
5425219 CCCG--CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGTAGATGGAGTTCATTCCCAGTCTAAGGT
450 CCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * **
5425282 TAGACCA-ACTGAGGGTTGCGACAGGAGGATC-AGCAGCACGTAGAGGGGGACCCGGCCGATCCC
515 CAGACCAGACTGAGGGTTGTGGCAGTAGGATCGA-CAGCACACAGAGGGGGACCCGGCCGATCCC
* ** ** * * * ** *** *
5425345 CGACT-TAC-GCAT-CCCGCCCGTCTAGC-CG----GTTGAG-CGCCTGTACGCTTATTTCGTGG
579 C-TCTGGCCGGC-TGAGCGCCCGTAT-GCTCGTTTCGTTG-GTTGACT-TA-GGGTATGGAGT-C
* * * * * * *
5425401 GTT--GACT-TAGGCATACGGAGTTCATTCCCAGTCTAGGATCAGACCGGACCGAGGGTTGTGGC
637 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CGAGGGTTGCGGC
* * * * * *
5425463 AGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTTGCCGGGGCGCCATTGAGGAG
701 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCAGGGCACCA-T--CG-G
*
5425528 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGA-GGGGCCGGGGGGTGTGCG
762 ---C--CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCG
*
5425592 CACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT-
822 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
5425633 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAG
1 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTAAAAGAGCATTTGAGATTTTACAG
* *
5425698 GTTTGCTGCCAGTAGCCATTATAGTGTCTGAAATGCGGACACTTTTTTCAAATGGTCACAAAATC
66 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * * *
5425763 TTTTACATTTCAAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
131 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTC
* *
5425828 TACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTT
196 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
** *
5425893 CAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
261 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
* * *
5425958 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTCATAGAAATATGATGATGTGCCAAA
326 CCATTGTATGAATTTACAAGCCATAAAAATGGCATT-GC-CACAGAAATATGAAGATGTGCCTAA
* * * * *
5426023 ACGCACCTACCACCCTAACGATCCACGGCTTGCGTAACCCGTCTCTCTGGCCGGCGTAGTGCCCG
389 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG
*
5426088 CCCGCCCGTCCGCCGCTCGATCGTTTCGTCTGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
454 -CC-CCCG--C-CCG--C--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * ** * * * *
5426153 ATGATCAGACCAAACTGAGGTTTGCGATAGTAGTATTGGCAGCACATAGAGGGGGACCAGCCGAT
510 AAGATCAGACCAGACTGAGGGTTGTGGCAGTAGGATCGACAGCACACAGA--GGG----G--GA-
* * * * * * *
5426218 CCCCGGCTTGCGCATGCCGCCCCTCTGGTCGGCTGAGCACCCGCACGCTCCTTTCGTGGGTTGAA
566 -CCCGGC---CG-AT----CCCCTCTGGCCGGCTGAGCGCCCGTATGCTCGTTTCGTTGGTTGAC
* * * *
5426283 TTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC
622 TTAGG-GTATGGAG-TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* ** * *
5426348 GGACCGAGGGTTACAACAGCACATGCTGGGCACGGGCATGT-CTGATGCCGTATTTTTCTT-GAT
685 GGA-CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCG-T
* * *
5426411 C-GGCACACCATCACCGGAGCATCGCCGAAGAACCTGACCAGCGGCATTTGGGTTCCGACGATC-
748 CAGG-GCACCAT---C-G-GC--CG--G-AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
* * * *
5426474 AGGGGGGCCAGGGGGTGTGCGCACATAATGTGCGATGGGTGATGGGACTTGGCCCTTATATTG
802 A-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
5426537 GCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAA-AGCATTTGAGATTTTACA
1 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC-TAAAAGAGCATTTGAGATTTTACA
*
5426601 GGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
65 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
5426666 CTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGT
130 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGT
*
5426731 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAATCCTGAACCGTAAAAAGT
195 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCCGAACCGTAAAAAGT
5426796 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT-AGG
259 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGG
* * *
5426860 GAACATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACATAGAAATATGAAGATGTGCCT
324 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-GC-CACAGAAATATGAAGATGTGCCT
* *
5426925 AAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTTTCTCTGGCC-AGCGTAGTGC
387 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGC
* * *
5426989 CCGCCCGCCCGCCCACCCTCCTGCTCGTTTCATCAGTTGGCTTAGGCTTACGGAGTTCATTCCCA
451 CCG-CC-CCCG------C-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * **
5427054 GTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGTAGAGGGGGACCCGG
506 GTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGTAGGATCGACAGCACACAGAGGGGGA-CC--
* * * * * *
5427119 TCGATCCTCGACTTACGCATCCCACCCCTCTAGCCGACTGAGCGTCGGCATGCTCATTTCG-TGG
568 -CG------G-C---CG-AT----CCCCTCTGGCCGGCTGAGCGCCCGTATGCTCGTTTCGTTGG
* * * *
5427183 TTTCAATTAGGCGTACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTATGAT
617 -TTGACTTAGG-GTATGGAG-TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
5427248 CGAACCGGACAGAGGGTTACGGTAGCAAATGCTGGGCTTGGGCATGTGCTGGTGCCGTATTTTTC
679 CGGACCGGAC-GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTC
* ** * * * * * *
5427313 TTCATTGGGGCACCATCGTCGGAGCATCACCGGAGAACCTAACCTGCAGCATTTGGGTTTCGATG
743 TTCGTCAGGGCACCA---TC-G-G-----CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
* * *
5427378 ATCG-GGGAGGCCGGGGGGTGGTTTGCGCACATGATCTGCGATGGTTGCTGGTACGTGGCCCTTA
798 ATCGAGGG-GGCCGGGGGGT-G--TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
5427442 TATT-
859 TATTG
* * *
5427446 TCTCCCCCATCCCTCATCAAAGCTCGAGAACTCACACCCCCTTAAAA-AGCATTTGAGATTTTAC
1 GC-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC-TAAAAGAGCATTTGAGATTTTAC
* * * *
5427510 AGGTTTGCTTCCAGTAGCCATTAAAGTGTCAGAAATTGGGACATTTTTTTCAAATGGTCACAAAA
64 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * *
5427575 TCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCCAAAAAAATACAAGGATCACA
129 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACG
* * * * * * *
5427640 ACTACCAAGTTTCGGGCCAAAAATCCTTCAG-AAAAATTTTAAAAAATCCCAAAACATAAAAAGT
194 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
** * * * * * * *
5427704 TTTGAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCACGAAACTTCGCATGAAGGTTTAATG
259 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGG
* *
5427769 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGGAGAAATATTAAGATGTGCCT
324 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCA--CAGAAATATGAAGATGTGCCT
* *
5427834 AAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGACGTAGTGCC
387 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
* * *
5427899 CGCCCGACCGCCCGCTCGTTTCGTCGGTTGGCTTAGTCTTACGGAGTTCATTCCTAGTCTAAGAT
452 CGCCC--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * *
5427964 CAGACCAGA-TCGAGGGTTATGGCAGTAGGATCGATAGCACACAGTGGGGGACCCGGCCGATCCC
515 CAGACCAGACT-GAGGGTTGTGGCAGTAGGATCGACAGCACACAGAGGGGGACCCGGCCGATCCC
*
5428028 CTCTGGCCGGCTGAGTGCCCGTATGCTCGTTTCGTTGGTTGACTTAGGGATATGGAGCTCATTCC
579 CTCTGGCCGGCTGAGCGCCCGTATGCTCGTTTCGTTGGTTGACTTAGGG-TATGGAG-TCATTCC
* *
5428093 CAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAGCAC
642 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CGAGGGTTGCGGCAGCAC
* *
5428158 ATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATC-GCCGGAGAAC
706 ATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCAGGGCACCATCGGCCGGAGAAC
5428222 CTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGGTGTGCGCACATGATGTGCG
771 CTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCG
*
5428287 ATGGGTGTTGGTACTTGGCCCTTATATTG
835 ATGGGTGCTGGTACTTGGCCCTTATATTG
**
5428316 GTGCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCCTAAAAGAGCATTTGAGATTTTACA
1 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCCTAAAAGAGCATTTGAGATTTTACA
*
5428381 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
65 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
5428446 CTTGTACA-TCTCGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAAAAAAAATAGAAGGTTCACG
130 CTTGTACACT-TCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACG
** * * * *
5428509 TCTACCAAGTTTGTTGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACTGCAAAAAGT
194 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
* * * *** * *
5428574 TTCAAAAATCGTGAAAAATAGAGAACGAGTCATCTTGTTGTGAAACTTCACATGAAGGCCTAAAG
259 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGG
*
5428639 GACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCACACAGAAATATGAAGATGTGCCT
324 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-GC-CACAGAAATATGAAGATGTGCCT
* * *
5428704 AAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTTTCTAGCCGACGTAGTGCC
387 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
* * * * **
5428769 CG--CCCGCCCGCTCGTTTCGTCAGTTGGCTTAGCCATATGGAGTTCATTTCCAGTCTAAGATTG
452 CGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* ** * * * * * **
5428832 GACCGGACCAAGGGATGTGCCAATAGGGTCGGCAGCACACAGAGGGGGACCCGATCGAT-CCC-C
517 GACCAGACTGAGGGTTGTGGCAGTAGGATCGACAGCACACAGAGGGGGACCCGGCCGATCCCCTC
* ** * * ** * * * * * *
5428895 -GGCTTGTGCAT-CTCGCCCCTCTGGC-CGGCTGAACGCGTGCTT-CCTT---GTTTCGTAG--G
582 TGGC-CG-GC-TGAGCGCCCGTAT-GCTC-G-T-TTCG-TTGGTTGACTTAGGGTAT-GGAGTCA
* * * * * * * *
5428951 TT--GACT-TAGGCATACGGAGTTCTTTCCCAGTCGAAGATCAGACCAGACTGAGGCTTGCGGCA
638 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC-GAGGGTTGCGGCA
**** *
5429013 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACCCTTTTCTTCG-CTGGGGCACCATCGTCGGA
702 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTC-AGGGCACCA---TC-G-
** * *
5429077 GCATCGGAGGAGAACCTGACCGATGGCATTGGGGTTACGACGGTCG-GGGGGCCGGGGGGTGTGC
761 GC--C---GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGC
* *
5429141 GCACATGATATGCGATGGGAGCTGGTACTTGGCCCTTATATTG
821 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * *
5429184 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTCACAG
1 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTAAAAGAGCATTTGAGATTTTACAG
*
5429249 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCATAAAATC
66 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * *
5429314 TTGTACACTTCGTGTTTTTTGCTAAATTTTTTTCTGCATGCCAACAAAAATACAAGGATCACGTC
131 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTC
* * * * * **
5429379 TACCAAGTTTGGAG-TAATACTCCTTTCAAAAAAATTTTTAAAAAATCTTGAACCGTAAAAAGTT
196 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCGTAAAAAGTT
**
5429443 TCAAAAATCATG-AAAATAG-AAACGAGTCGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGG
260 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
* * * *
5429506 ATCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAAGAAGGTGTGCCTA
325 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCAC--AGAAATATGAAGATGTGCCTA
* * * *
5429571 AACCCACCTACCACCATATCGATCCACGGCTTACGCATCCCATCTCTCTGGCCAACGTAGTGCCC
388 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
* *
5429636 GCCCACTCGCCCGCCCGATCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
453 GCCC-C-CGCCCG--C--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * * **
5429701 GATCAGACCAGACTGAGGGTTGCAGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCGATCGATC
512 GATCAGACCAGACTGAGGGTTGTGGCAGTAGGATCGACAGCACACAGAGGGGGACCCGGCCGATC
5429766 CCC
577 CCC
5429769 GATTGTGCAT
Statistics
Matches: 3552, Mismatches: 435, Indels: 291
0.83 0.10 0.07
Matches are distributed among these distances:
858 2 0.00
859 97 0.03
860 2 0.00
862 4 0.00
863 3 0.00
864 7 0.00
865 371 0.10
866 291 0.08
867 152 0.04
868 185 0.05
869 142 0.04
870 350 0.10
871 42 0.01
872 16 0.00
874 91 0.03
875 3 0.00
876 51 0.01
877 29 0.01
879 5 0.00
881 1 0.00
882 153 0.04
883 5 0.00
885 2 0.00
886 2 0.00
887 8 0.00
890 3 0.00
891 3 0.00
894 2 0.00
895 8 0.00
896 11 0.00
897 4 0.00
898 1 0.00
899 15 0.00
900 12 0.00
901 118 0.03
902 106 0.03
903 58 0.02
904 348 0.10
905 168 0.05
906 139 0.04
907 73 0.02
908 85 0.02
909 133 0.04
910 250 0.07
912 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (863 bp):
GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTAAAAGAGCATTTGAGATTTTACAG
GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTC
TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCACAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
AGACTGAGGGTTGTGGCAGTAGGATCGACAGCACACAGAGGGGGACCCGGCCGATCCCCTCTGGC
CGGCTGAGCGCCCGTATGCTCGTTTCGTTGGTTGACTTAGGGTATGGAGTCATTCCCAGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACGAGGGTTGCGGCAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCAGGGCACCATCGGCCGGAGAACCTGACCGGCG
GCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTG
Found at i:5435096 original size:26 final size:26
Alignment explanation
Indices: 5435060--5435112 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5435050 GTTGACTTAG
*
5435060 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5435086 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5435112 G
1 G
5435113 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5437719 original size:25 final size:26
Alignment explanation
Indices: 5437690--5437738 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
5437680 GTTGACTTAG
5437690 GCATACG-AGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5437715 GCATACGAAGTTCATTCCCAGTCT
1 GCATACGAAGTTCATTCCCAGTCT
5437739 GAGATCGAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5439401 original size:901 final size:900
Alignment explanation
Indices: 5436825--5446247 Score: 12283
Period size: 901 Copynumber: 10.5 Consensus size: 900
5436815 GTTGACTTAG
** *** * ** *
5436825 GCATAC-GAAGTTCATTCCCAGTCTAAGATTGGATTGGACCGAGGGTTTCAACAGCACTTGCTGG
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * ** * * * *
5436889 GCTCGGGCATGTGCTGGTGCCACTTTTTTCTTCGTCAGGGCACCTTCACCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCACCGGAG
* * *
5436954 AACCTGACCTACAGCATTGGGGTTCCGACGATC-GGGGGG-CTGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
** * * ** *
5437017 CGATGGGTGCTGGTACTTAACCCGTATAATATCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
5437082 ACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* **
5437147 GGAGACAAATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
5437212 TGCATGCCAAAAAAAATACAAGGATCATGTTTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAA
* * * **
5437277 ATTTAAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
5437342 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
5437407 TTGGCACGCAGAAATATGAAGATGTGCCTAAACGCACCTACCA-CCTATCGATCCACGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
5437471 CATCCCGTCTCTCTGGCCGACGTAGT--------GCCCGCCCGCCCGTTCGTTTCGTCGGTTGGC
649 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
** * * *
5437528 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCAGTAGTAGGATC
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGTAGCAGGATC
* * *
5437593 GGCAGTACACAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCG-CCCTCTGGCCGGCTGA
778 GGCAGCACACAGAGGGGGACCCG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
** * *
5437657 GCGGTCGCACGCTCGATTCATGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAA
842 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** **
5437715 GCATAC-GAAGTTCATTCCCAGTCTGAGATC-GAACCAGACCAAGGCATGCAACAGCACATGCTG
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCACATGCTG
* * * *
5437778 GGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCACCGAA
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCACCGGA
* * * *
5437843 GAACCTGGCCGACGGTATTGGGGTTCCGTCGATC-AGGGGGCCGGGGGGTGTGCGCACATGATGT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
*
5437907 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
5437972 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
5438037 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTT-TACACTTCGAGTTTTCAGCTTAATTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAAT-CTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
5438101 TATGCATGGCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAA
* *
5438166 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
5438231 TTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
**
5438296 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
5438361 CGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTG
647 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* ** * * *
5438426 GCTTAGGCATACGAAGTTCATTCTTAGTCTAAGATCAGACC-GAATCGAGGGTTACGATAGCCGG
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-A-CGAGGGTTGCGGTAGCAGG
* * * * * **** *
5438490 ATCAGCAGCACACAGAGGGGGACCTAGTCGATCCTCGGGTTGAGCATCCCATAACTCTGGTCGGC
775 ATCGGCAGCACACAGAGGGGGACC-CGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
5438555 TGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
839 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
5438617 GCATACAGAGTGCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * *
5438682 CTCGGGCATGTGTTGGAGCCGTATTTTTCTTAACCGAGGCACCATCGTCGGAGCATCATCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCACCGGAGA
* ** * *
5438747 ACCTCACTAACGGTATTGGGGCTCC-ATCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
5438811 CGATGGGTGTTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
5438876 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
5438941 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGAATGTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
5439006 TGCAAGCCAACAAGAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAA
* * **
5439071 ATTTTAAAAAGTCTCGAACCGCAAAAA-TTTTGAAAATCGTG-AAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
5439134 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
5439199 TTGGTACGTAGAAATATGAAGATGTGCCCAAACCCACCTACCACACTATCGATCCACGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
5439264 CATCCCGTCTCTCTAGTCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
649 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * *
5439329 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTGCGGCAGCAGGATC
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGTAGCAGGATC
* * * * * * * *
5439394 GGCAGCACATAGAGGGGGACCCGACTGATCCCCTGCTTGCTCATCCTGTCTCTCTGGCCAGCGTG
778 GGCAGCACACAGAGGGGGACCCGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC-TG
* * ** *** * * * *
5439459 -GTGCCCGCCCG-TCCG-CCCGCCCGTT-AGC-T---CATTTC---G-TCGATT--GACT-TAG
841 AGCGCCCGCACGCT-CGTTTCGTGGGTTGA-CTTAGGCA-TACGGAGTTC-ATTCCCAGTCTAA
* * * ** * * *
5439508 GCATACAGAGTTCATTCCCAGTATAAGATCAGATCGGATTGAGGGTTACGGCAGCAGATGCTAGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * *
5439573 CTCGGGCATGTGCTGGTGTCATATTTTTCTTCACAGGGGCACTATCATCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCACCGGAGA
* * *
5439638 ACCTGATCGACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
5439703 GATGGGTGTTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
5439768 CCCCC-TAAAGAGCATTTGAGA-TTTAGAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
5439831 GGGACACTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
5439895 GCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTT-GGGTCAAAACTCCTTCGGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAA
* * ** * *
5439958 TTTTAAAAAATCACGAACCCCAAAAAGTTTCAAAAATTTTGAAAAATAAAAAATGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * * *
5440023 GCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGTAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
5440088 TGG-A-GCATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC-ATCAATCCATGACTTGC
585 TGGCACGC--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
5440150 GCATCCCGTCTCTCTGGCC-AGCGTAGTGCCCGCCCGCCTGCCCGCTCGCTCGTTTCGTTGGTTG
648 GCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * *
5440214 G-TTAAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGTGTTGCGGTAGCATG
712 GCTT-AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGCGGTAGCAGG
* * ** * * * ** *
5440278 ATCTGTAGCACGTAAAAGAGGACCCGGTCGATCCCCGGCTTGCGCATCCCATCCCTCTGGCCGGT
775 ATCGGCAGCACACAGAGGGGGACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * * *
5440343 TGACCGCCCGTATGCTAGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
839 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
5440405 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** * * **
5440470 CTCGGGCATATGCTAGTACCACATTTTTCTTCGTCGGGGCACCATCATCGAAGGATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCACCGGAGA
* ** * * *
5440535 ACCTGATCGGGGGCATTAGGGTTCCGACGATCAGGGGGACCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
5440600 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCTAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
5440665 CCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
5440730 GGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
5440795 GCATGCCTACAAAAATACAAGGATCACGTCTACCAAGTTTCGGG-CAAAACTCCTTTTGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAA
* *
5440859 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAATGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
5440924 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
5440989 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
5441054 ATCCCATCTCTCTAGCCGACGTAGTG-CCG---GCCCGTCCGCCTGCTCGTTTCGTCGGTTGGCT
650 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * *
5441115 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCACACCAAAACAAGGGTTGCAGCAGTAGGATCG
715 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AGACGAGGGTTGCGGTAGCAGGATCG
* * *
5441180 ACAGCACATAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAG
779 GCAGCACACAGAGGGGGACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
5441245 CGCCCGCACGCTTGTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCTAGTCGAA
843 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
5441303 GCATACGGAGTTCATTGCTTGTCTAAGATC-GAACCAGACCGAGGGTTGTGGCAGCACATGCTTG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
5441367 GCTCAGGCATGTGCTGGTGCCGCA-TTTTCTTCACCGGGGCACCATCGTTGGAGCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCACCGGAG
** * * *
5441431 AACCTGACCGGTGTCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTATG-GCACAAGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * **
5441494 CGATGGCTGCTGGTACATGGCCCTTATATTGGCCGCCTATCCCTCATCAAATGTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
5441559 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
5441624 GGGGACAATTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
5441689 TGCAAGACAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCATTCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAA
* * * *
5441754 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
5441819 GCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTGTGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * ** * * *
5441884 TTGGCACACAAAAATATGAAGATGTGCCTAAACCCAAATATCACCTTATCGATCCACAGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** *
5441949 CATCCCG--TCTCTGGCCGGCGTATTGCCCGTTCG-TCGCCCGCCCGCTCGTTTCGTCGGTTGGC
649 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* *** * * *
5442011 TTAGGCATACAGAGTTCATTTTTAGTCTAAGATCAGACCAGATTGAGGGTTGCGATAGCTGGATC
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGTAGCAGGATC
* ** * * * *
5442076 AGCAGCACACAGAGGGGGACCCAACCGATCCCCGGGTTACGCATCTCGCCCCTCTGGCCGACTGA
778 GGCAGCACACAGAGGGGGACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
** * *
5442141 GCATCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTACCAGTCTAA
842 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
5442200 GCATACAGAGTTCATTGCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * *
5442265 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACTATCACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCACCGGAGA
* *
5442330 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
5442395 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCGCA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
5442460 CCCCCTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
5442525 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
5442589 GCAAGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTCTAAAAAAT
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAAT
* * *
5442654 TTTAAAAAATCTCGAACCTCAAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTG
456 TTTAAAAAATCCCGAACCGC-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
5442719 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
5442784 TGGCATGCAGAAATATGAAGATGTACCTAAATCCACCTACCACCCTATCGATCCATGGCTTGCGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
5442849 ATCCCG--TCTCTGGCCGGCGTAGTGCCCGCCCACCTGCCCACCCGCTCGTTTCGTCGGTTGGCT
650 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
** * *
5442912 TAGGCATACGGAGTTCATTCTTAGTCTAAGATTAGA-CAGGACTGAGGGTTGTGGTAGCCA-GAT
715 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GAC-GAGGGTTGCGGTAG-CAGGAT
* * * *
5442975 CAGCAGCACAAAGAGGGGGACCCGATTGATCCCCGGGTTGCGCATCCCGCCCCTCTGGCCGGCTG
777 CGGCAGCACACAGAGGGGGACCCG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * * *
5443040 TGCACCTGCATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTACCAGTCTAA
841 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
5443100 GCATACAGAGTTCATTGCCAGTCTAAGATCCGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
5443165 CTCGGGCATATGATGGTGCCGCATTTCTCTTCACCGGGGCACTATCACCGTAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCACCGGAGA
* * * *
5443230 ACCTGACCGACGACATTGGGGTTCCGACGATCAGGGGGGCCGGGTGGGTGTGCGCAAATGATGTA
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGGTGTGCGCACATGATGTG
* * * ** *
5443295 TGAAGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCGACATCAAACATCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
5443360 ACCCCCTTAAAGAGCATTTGAGATTGTACTGGTTTGCTGCCAGTGGCCATCAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
**
5443425 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCGGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
5443490 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAC-CCTTCTGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAA
** * * * * * *
5443554 ATTAAAAAAAATGCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAACAGAAAAGGAGTCGTCCT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
5443619 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
5443684 TTGGGACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
5443749 CATCCCGTCTCTCTGGCCGGCATAGT--------GCCCGCCCGCCCGCTCTTTTCGTCGGATAGC
649 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* ** *
5443806 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAGTAGACCAAGGGTTGCGGTAGCAGGATC
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGTAGCAGGATC
* * * *
5443871 GGCAAG-ACAC-GGGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCG-CCCTCTGGCCGGTTG
778 GGC-AGCACACAGAGGGGGACCCG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
*
5443933 AGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * * *
5443993 GCATACAAAGTTCATTCCTAGTCTAAGATCAAACTGGACCGAGGGTTGCGACAGAACATGCTAGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
5444058 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGTCA-C--CATC---G--T---CGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCACCGGAGA
* * ** ** *
5444112 ACCTGACC-AGCGGTATTAGGGTTCCGGTGATCGTCGGGGTCGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * * *
5444176 TGATGGGTACTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCCCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
5444241 GCCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGCAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAA
* *
5444306 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* **
5444371 GTGCATGCCAACAAAAATACAAGGATCTCGTCTACCAAGGTTT-TAGCCAAAACTCCTTACGAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTT-CGAAA
* * ** *
5444435 AAATTTTAAAAAATCTCGATCCATAAAAAGTTTCAAAAATCATTGAAAAATAGAAAACGAGTCAG
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC-GTGAAAAATAGAAAACGAGTC-G
* *
5444500 TCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGACCAATGTATGAATTTACATGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
5444564 GGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGGCT
580 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
5444629 TGCGCATCCCGTCTCTCTGGTCGACGTGGTGCCCGCCCACCCGCTCACCCGCTCGCCTGCTCGTT
645 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG----CCCG--C-CC-GCTCGTT
* *
5444694 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGT
702 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGC
* * * *
5444759 GGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCACATCCCGCCCCT
766 GGTAGCAGGATCGGCAGCACACAGAGGGGGACCCG-TCGATCCCCGGCTTGCGCATCCCGCCCCT
* *
5444824 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCA
830 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
*
5444889 GTCGAA
895 GTCTAA
* ** * * * **
5444895 GCATACAGAGTTCATTCCCAGTCTATGATTGGATCGGACCGAGGGTTACGATAGCACA---T--G
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
5444955 CT-GGGC---T-C--G-G--GCATTTTTCTTCATCGCGGCACCATCGTTGGAGCATCGCCGGGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCACCGGAGA
** * * * * *
5445010 ACCTGACCGGTGGAATTGAGGTTCCGTCGACCGGGGGGGCTGGGGGCAGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG--GTGTGCGCACATGATGT
*
5445075 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
5445140 CACACCCTTAAAGAGCATTTGTGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
5445205 TGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCGAATTTTTAGCTGACTTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * * **
5445270 ATGCAAGACAACAACAATACAAGGATCACGTCTACTTAGGTTT-TAGCCAAAACTCCTTACGAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTAC-CAAGTTTGGGGCCAAAACTCCTT-CGAAA
* * *
5445334 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAGAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
5445399 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
5445464 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * **
5445529 TGCATTCCGTCTCGCTGGCCGGCATAGT--------GCCCGCCTGCCCGCTCGTTTTGTCCATTG
647 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * *
5445586 GATTAGGCATACGGAGTTCATTACCAGTCTAAGATCGGACCGGACTGAGGGTTACGATAGCAGGA
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGCGGTAGCAGGA
* ** * * * * * * *
5445651 TCGACAGCATGCAAAGAGGAACCCAGCCGA-CCCCGACTTGCGTATCCCGCCCCTCTGGCCGACT
776 TCGGCAGCACACAGAGGGGGACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
5445715 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCACAATCTAA
840 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
5445776 GCATACGGAGTTCATTCCCAGTCCAATATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTAGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * **
5445841 CTCGGGCATGTGCTGGTACCGTATTTTTCTTCGCCTGGGCACCATCACCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCACCGGAGA
* * * *
5445906 ACCTGACCGATGGCATTGGGGTTACGGCCATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
5445970 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* **
5446035 CCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTGTTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
5446100 GGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
5446165 GCATGACAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCAAAAAAT
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAAT
5446230 TTTAAAAAATCCCGAACC
456 TTTAAAAAATCCCGAACC
5446248 ATAAAAATGG
Statistics
Matches: 7502, Mismatches: 880, Indels: 300
0.86 0.10 0.03
Matches are distributed among these distances:
881 266 0.04
882 238 0.03
883 50 0.01
884 138 0.02
885 32 0.00
886 58 0.01
887 241 0.03
888 144 0.02
889 97 0.01
890 167 0.02
891 655 0.09
892 89 0.01
893 407 0.05
894 57 0.01
895 330 0.04
896 296 0.04
897 587 0.08
898 534 0.07
899 528 0.07
900 893 0.12
901 971 0.13
902 409 0.05
903 315 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCACCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACGAGGGTTGCGGTAGCAGGATCGGC
AGCACACAGAGGGGGACCCGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5440409 original size:26 final size:26
Alignment explanation
Indices: 5440379--5440431 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5440369 GTTGACTTAG
5440379 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
5440405 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
5440431 G
1 G
5440432 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:5451558 original size:904 final size:890
Alignment explanation
Indices: 5449768--5451739 Score: 2607
Period size: 904 Copynumber: 2.2 Consensus size: 890
5449758 TGTTGGCATG
*
5449768 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG-AGCCCTA
1 TCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCCCT-
* * * * *
5449832 AAAAGTTTTAGAAATCGTGAAAAATAGAAAACGAGTCGTGTTGTCATGAAACTTCACATGAACGC
64 AAAAGTTTTA-AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
*
5449897 TTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGAT
128 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGAT
* * * * ** * *
5449962 GTGCTTAGACCCACCTACCACCTTATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGACGT
193 ATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTACGCATCCCGCCTCTCTGGCCGACAT
* *
5450027 AGTAACACAACCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGT
258 AGTAACACAACCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTACGCATACGGAGTTCATTCCCAGT
* * * *
5450092 CTAAGATCAGACTGAATCGAGGGTTGCGGCAGCAGGAACGGTAGCACGCAGAGGGGTACCCGACC
323 CTAAGATCAGACTGAACCGAGGGTTGAGGCAGCAGGAACAGTAGCACACAGAGGGGTACCCGACC
* * * * * * * *
5450157 GATCCCTGGCTTGCGCATCATGCCCCCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTTGTGGGT
388 GATCCCCGGCTTGCGCAGCA-CCCCCCTCTAGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGT
* *** *
5450222 TTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGTAGATGGAGTTCATTCCCAGTCTAAGATTG
452 TTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCAGACAAAGTTCATTCCCAGTCTAAGATTA
*** *
5450287 GATCAGACCAAGGGTTGCGACAACACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTT
517 GATCAGACCAAGGGTTGCGACAACACATGCTGGGCTCGGGCATGCACTGGTGCCACATTTTTCTT
* * *
5450352 CGCTGGGGCACTATCGCCGGAGCATCGCCGGAGAACCTGACCGACAGCATTAGGGTTGTGGCGAT
582 CGCCGGGGCACCATCGCCGGAGCATCGCCGAAGAACCTGACCGACAGCATTAGGGTTGTGGCGAT
* * *
5450417 CGAGGGGGTGTGCGCCCATGATGTGTGATGGATACTGGTACTTGGACCTTATATTGGCCCCTTAT
647 CGAGGGGGTGTGCGCACATGATGTGCGATGGATACTGGTACTTGGACCTTATATTGGCCCCCTAT
* *
5450482 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
712 CCCTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
5450547 CAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACAAT
777 CAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACAAT
* *
5450612 TTGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAAGA
842 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAAGA
* * * * *
5450661 TCACGTCTACCAAGTTTGGGATCAAAACTCCTTCCGAAAGAATTTTAAAAAAACCCGAATCTCTA
1 TCACGTCTACCAAGTTTGGG-CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCCCTA
* * *
5450726 AAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTTGCCTTGCCATGAAACTTCACGTGAAGGCT
65 AAAGTTTT-AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
*
5450791 TAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGC-CTGTAGAAATATGAAGAT
129 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC-GTAGAAATATGAAGAT
* *
5450855 ATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTACGGATCCCGCCTCTCTGGCCGGCAT
193 ATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTACGCATCCCGCCTCTCTGGCCGACAT
** * ** *
5450920 AGTGCTCGCCCGCCCGCCCGCCTGCTTGTTTCGTCGGTTGGCTTACGCATACGGAGTTCATTCCC
258 A--G-TAACACAACCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTACGCATACGGAGTTCATTCCC
* * * * *
5450985 AGTCTAAGAGT-GGA-TCGGACCGAGGGTTGAGGTAGCAGGATCAAG-AGCACATAGAAGGGG-A
320 AGTCTAAGA-TCAGACT-GAACCGAGGGTTGAGGCAGCAGGAAC-AGTAGCACACAG-AGGGGTA
* ** * *
5451046 CCCGATCGATCCCCGGCTTGCGCAGC-CCACCCCTCTAGCCGGCTGAGCTTCCATACGTTCGTTT
381 CCCGACCGATCCCCGGCTTGCGCAGCACC-CCCCTCTAGCCGGCTGAGCGCCCACACGCTCGTTT
* *
5451110 CGTGGG-TTGATTTAGGCATACGGAGTTCATTCGCAGTCTAAGCATACAAAGTTCATTCCCAGTC
445 CGTGGGTTTGACTTAGGCATACGGAGTTCATTC-CAGTCTAAGCAGACAAAGTTCATTCCCAGTC
* ** * *
5451174 TAAGATTAGA-CAGGATCAAGGGTTGCGGTAGCATATGCTGGGCTCGGGCATGCACTGGTGCCAC
509 TAAGATTAGATCA-GACCAAGGGTTGCGACAACACATGCTGGGCTCGGGCATGCACTGGTGCCAC
* * * *
5451238 ATTTTTCTTTGCCGGGGCACCATCGCCGGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGGT
573 ATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGAAGAACCTGACCGACAGCATTAGGGT
* * * * * *
5451303 T-TCGGCGATCGGGGGGGCCGGAGGTGTGTGCGCACGTGATGTGCGATGGGTGCTGGTGCTTGGC
638 TGT-GGCGATC------G-AGG-GG-GTGTGCGCACATGATGTGCGATGGATACTGGTACTTGGA
*
5451367 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACTCACTTAAAGAGCATTTGA
693 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGA
* * *
5451432 GATTTTACAGGTTTGTTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
758 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGG
*
5451497 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
823 TCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
*
5451562 GGA
888 AGA
* * * * * * *
5451565 TC-CTGTCTACCAAGTTAAGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATTCTGAACCGCA
1 TCAC-GTCTACCAAGTT-TGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCCCT
* *
5451629 AAAAGTTTCCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGC
64 AAAAGTTT-TAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * *
5451694 TCAAGGGACGATTGTATGAATTTACAAGCCATAAAAATGGCGTTGG
128 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
5451740 GAGTTCATTC
Statistics
Matches: 935, Mismatches: 117, Indels: 43
0.85 0.11 0.04
Matches are distributed among these distances:
892 4 0.00
893 222 0.24
894 34 0.04
895 177 0.19
896 115 0.12
897 7 0.01
901 1 0.00
902 2 0.00
903 3 0.00
904 367 0.39
905 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
TCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCCCTAA
AAGTTTTAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATATG
CCTAAACCCACCTACCACCCTATCGATCCACAGCTTACGCATCCCGCCTCTCTGGCCGACATAGT
AACACAACCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTACGCATACGGAGTTCATTCCCAGTCTA
AGATCAGACTGAACCGAGGGTTGAGGCAGCAGGAACAGTAGCACACAGAGGGGTACCCGACCGAT
CCCCGGCTTGCGCAGCACCCCCCTCTAGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTTGA
CTTAGGCATACGGAGTTCATTCCAGTCTAAGCAGACAAAGTTCATTCCCAGTCTAAGATTAGATC
AGACCAAGGGTTGCGACAACACATGCTGGGCTCGGGCATGCACTGGTGCCACATTTTTCTTCGCC
GGGGCACCATCGCCGGAGCATCGCCGAAGAACCTGACCGACAGCATTAGGGTTGTGGCGATCGAG
GGGGTGTGCGCACATGATGTGCGATGGATACTGGTACTTGGACCTTATATTGGCCCCCTATCCCT
CATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACAATTCGA
GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAAGA
Found at i:5453844 original size:13 final size:13
Alignment explanation
Indices: 5453826--5453865 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
5453816 GCCGGAGGGG
5453826 TGTGCGCATATGA
1 TGTGCGCATATGA
5453839 TGTGCG-ATCA--A
1 TGTGCGCAT-ATGA
5453850 TGTGCGCATATGA
1 TGTGCGCATATGA
5453863 TGT
1 TGT
5453866 TCGATGAGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 8
0.74 0.00 0.26
Matches are distributed among these distances:
11 8 0.35
12 4 0.17
13 11 0.48
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.33
Consensus pattern (13 bp):
TGTGCGCATATGA
Found at i:5454586 original size:26 final size:26
Alignment explanation
Indices: 5454550--5454602 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5454540 GTTGACTTAG
**
5454550 GCATACGGAGTTCATTTGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5454576 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5454602 G
1 G
5454603 ATTGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5455493 original size:26 final size:26
Alignment explanation
Indices: 5455455--5455507 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5455445 GTTGACTTAG
*
5455455 GCATACGGTGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
5455481 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5455507 G
1 G
5455508 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5456384 original size:26 final size:26
Alignment explanation
Indices: 5456354--5456408 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
5456344 ATGGGTTGAC
*
5456354 CTAGGCATACGGAGTTCATTCCCAGT
1 CTAGGCATACAGAGTTCATTCCCAGT
5456380 CTAGGCATACAGAGTTCATTCCCAGT
1 CTAGGCATACAGAGTTCATTCCCAGT
5456406 CTA
1 CTA
5456409 AGATCAGACC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
CTAGGCATACAGAGTTCATTCCCAGT
Found at i:5456768 original size:903 final size:900
Alignment explanation
Indices: 5453850--5457148 Score: 4758
Period size: 904 Copynumber: 3.7 Consensus size: 900
5453840 GTGCGATCAA
* * * * * *
5453850 TGTGCGCATATGATGTTCGATGAGTGCTGGTACATGGCCCTTATATTGGCCCCCTAGCCCTCATC
1 TGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* **
5453915 AAACCTCGAGAACTCACACCCCCTTAGCGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
66 AAACCTCGAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
5453980 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
131 ATTAAAGTGTCTAAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTT
* ** * *
5454045 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCGTGTCTACCAATTTTGGGGCCA
196 TTAGCAGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAA
* * * * *
5454110 AAACTCCTTTT-GAAAACATTTTAAAAAATCCCGAACCGCATAAAGTTTCAAAAATTGTGAAAAA
261 AAACT-CTTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
* * *
5454174 TGGAAAACGAGTCGTCTCGCCATGAAACTTCATGTGAAGGCTTACA-GGACCATTGTATGAATTT
325 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA-AGGGACCATTGTATGAATTT
* * *
5454238 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATAAT-AAGATGTGCCTAAACCCACCAACCACC
389 ACAAGCCATAAAAATGGCATTGGCACGCAGAAAT-ATGAAGATATGCCTAAACCCACCTACCACC
* * * * *
5454302 CGATCGATCCACGGCTTGCGCATCCAGTCTCTCTGGTCGGTGTAGTGCCCGCCCGCCCCGCCCAC
453 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCCGCCCGC
* * * **
5454367 CCGCTCGTTTCGTCGGTTGGTTTAGG-ATACAGAGTTCATTCCCAATCTAAGATC-GAACCAGAC
517 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACTGGAC
* * * *
5454430 CGAGGGTTACGGTAGCAGGATCGGCAGCTCGCAGAGGGGGACCCGGTCGATCCCC-AGCTTGCGC
581 CGAAGGTTACGGAAGCAGGATCAGCAGCACGCAGAGGGGGACCC-GTCGATCCCCGA-CTTGCGC
* *
5454494 ATCTCACCCCTCTGG-CTGGCCGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
644 ATCTCGCCCCTCTGGTC-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
** * * *
5454558 AGTTCATTTGCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGATTGGACCAAGGGTT
708 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTT
* * * * *
5454623 ACGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGTCACT-TTTTTCTTCACCGGGGCACCATC
773 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA-TATTTTTCTTCGCCGGGGCACCATC
* * * ** *
5454687 GTCGGAGCATCACCAGAGAACCTGACCGACGGCATTAAGGTTCCGGCGATCGCGGGGGCCGGGGG
837 GCCGGAGCATC-GCGGAGAACCTGACCGACGGCATTGGGGTTCC-GCGATCGAGGGGG-CGGGGG
5454752 GG
899 GG
* *
5454754 TGTGCGCACATGATGTGCGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
1 TGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
5454819 AAACCTCGAGAACTCACA-CCCCTTAAA-ATTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
66 AAACCTCGAGAACACACACCCCCTTAAAGA--GCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
5454882 CCATTAAAGTGTCTAAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGT
129 CCATTAAAGTGTCTAAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGT
*
5454947 TTTTAGCAAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
194 TTTTAGCAGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* *
5455012 AAAAACTCTTTTCAAAAAAATTTTAAAAAATCCTGAATCGTAAAAAGTTTCAAAAATCGTGAAAA
259 AAAAACTCTTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
*
5455077 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTT
324 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
5455142 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCC
389 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCC
* *
5455207 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCTCGCCC
454 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCC
* * * **
5455272 ACTCGTGTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCCG
519 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA-CCG
* * * * * *
5455337 -AGGATTACGGAAGTAGGATCAGTAGCACGCAGAGGGGGACCCGATTGACCCCCGGCTTGCCCAT
583 AAGG-TTACGGAAGCAGGATCAGCAGCACGCAGAGGGGGACCCG-TCGATCCCCGACTTGCGCAT
* * * *
5455401 CCCGCCCCTCCGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGTGT
646 CTCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* *
5455466 TCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCG
711 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCG
* *** *
5455531 ACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCG
776 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCATCGCCG
* * * *
5455596 GAGCATTGCTGGAGAACCTGACCGGCGGTATTGGGGTTCCGACGATCGAGGGGGCTGGGGGG
841 GAGCATCGC-GGAGAACCTGACCGACGGCATTGGGGTTCCG-CGATCGAGGGGGCGGGGGGG
* *
5455658 TGTACGCT-CATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
1 TGTGCG-TACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
5455722 TAAACCTCGAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
65 CAAACCTCGAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
5455787 CATTAAAGTGTCTAAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTT
130 CATTAAAGTGTCTAAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTT
* *
5455852 TTTAGCAGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGCGCA
195 TTTAGCAGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCA
* * *
5455917 AAAACTCTTTTCAAAAAAATTTTAAAAAATCCTGAATCGTAAAAAGTTTCGAAAATCGTGAAAAA
260 AAAACTCTTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
*
5455982 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTA
325 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
5456047 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCT
390 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCT
* *
5456112 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCG
455 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCG
* * * *
5456177 CTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGGCTGAA
520 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAA
* * * ** * *
5456242 GGTTGCAGCAGCAGGATTTGCAGCACGCAGAGGGGGACCCAGCCGATCCCCGACTTGCGTATCTC
585 GGTTACGGAAGCAGGATCAGCAGCACGCAGAGGGGGACCC-GTCGATCCCCGACTTGCGCATCTC
** * * *
5456307 GTGCCTCTGGTCGGCTGAGCGCCC-CTACGCTCATTTCATGGGTTGACCTAGGCATACGGAGTTC
649 GCCCCTCTGGTCGGCTGAGCGCCCGC-ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * *
5456371 ATTCCCAGTCTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGC
713 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGC
*
5456436 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCCGAGGG-ACCATGGCCGG
778 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCCG-GGGCACCATCGCCGG
* *
5456500 AGCATCGTCGGAGAACCTAACCGACGGCATTGGGGTTCCAGCGATCGGGGGGGTC-GGGGGG
842 AGCATCG-CGGAGAACCTGACCGACGGCATTGGGGTTCC-GCGATCGAGGGGG-CGGGGGGG
* **
5456561 TTTGCGTACATGATGTGCGATGGGTGCTGGTACTTGTTCCTTATATTGGCCCCCTATCCCTCATC
1 TGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
5456626 AAACCTCGAGAACACAAACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
66 AAACCTCGAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
**
5456691 ATTAAAGTGTCTAAAATGGGGACTCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTT
131 ATTAAAGTGTCTAAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTT
* * * * *
5456756 TTAGCTGAATTTTTTTGTGCATGCTAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCA
196 TTAGCAGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAA
* * * *
5456821 AAACTCTTTTCGAAAAAATTTTAACAAATCCCAAACCGTAAAAAGTTTCAAAATTCGTGAAAAAT
261 AAACTCTTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
*
5456886 AGAAAACGAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
326 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
5456951 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTA
391 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTA
* * * * * ** **
5457016 TCGATCCATGGCTTGCACATCCCGTCTCTCTTGCCGGCATAGTGCTCGCCTTCCCATCCG-CCGA
456 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCG-
* * * * * *
5457080 CTCGTTTCTTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAACATCGGACTAGACCGAG
520 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAA
5457145 GGTT
585 GGTT
5457149 GCGACAGCTC
Statistics
Matches: 2173, Mismatches: 195, Indels: 55
0.90 0.08 0.02
Matches are distributed among these distances:
902 6 0.00
903 844 0.39
904 1050 0.48
905 271 0.12
906 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
TGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
AAACCTCGAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTAAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTT
TTAGCAGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAA
AAACTCTTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTA
TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGC
TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAAG
GTTACGGAAGCAGGATCAGCAGCACGCAGAGGGGGACCCGTCGATCCCCGACTTGCGCATCTCGC
CCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGC
ACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCATCGCCGGAGCA
TCGCGGAGAACCTGACCGACGGCATTGGGGTTCCGCGATCGAGGGGGCGGGGGGG
Found at i:5459968 original size:902 final size:899
Alignment explanation
Indices: 5457561--5461982 Score: 5674
Period size: 902 Copynumber: 5.0 Consensus size: 899
5457551 ACTAAAAAAA
* * * * * * * *
5457561 TTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGTAGCAGGATTGGCACCACGTAGAG
1 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAG
* * * * *
5457626 GGGGACCCGATCGAT-CCCTAGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACACT
66 GGGGACCCGACCAATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * * **
5457690 CGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTTTAAA-CATACAAAGTTCATTCC
130 CGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAG-TCAAAGCATACGGAGTTCATTCC
* * * ** * *
5457754 CAGTCTAAGATCAGATCGGACCAAGGGTTGCGACAGCACATGCTAGGCTCGAGCATGTGCTGGTG
194 CAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * * * * * * *
5457819 TCACTTTTTTCTTTGCCAGGGCACCATCGTCGAAGCATCATCGAAGAACCTGATCGACGGCATTA
259 CCACATTTTTCTTCGTCGGGGCACCATC-AC--AGCATCGTCGGAGAACCTGACCGACGGCATTG
5457884 GGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
321 GGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
5457949 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
385 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * *
5458014 GAGATTTTATAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTCGAAATGGGGACACTTTTCTCAAA
450 GAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAA
* * *
5458079 TGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCGAACAAAAATA
514 TGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * *
5458144 CAAGTATCATGTCTACCAAGTTTGGGGCAAAAACTCCTTCTGAAAAAATTTTCAAAAATCATGAA
579 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAA
*
5458209 CCGTAAAATA-TTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
644 CCATAAAA-AGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * ***
5458273 GAAGGCTAAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATAT
708 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
* *
5458338 GAAGATGTGCCTAAACGCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTTGC
773 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
** * * *
5458403 CGGCGTAGT----GCCCGCCTGCTTGCCCGCTCGTTTCATCAGTTGGCTTAGGCATAGGGAG
838 CGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * *
5458461 TTCATTCCCAGTCTAAGACCGGACCGGACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAG
1 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAG
* * * * *
5458526 GGGGACCCGACCGATCCCCGACTTACGCATCCCGCCCCTTTGGCCGACTGAGCGCCCCGCATGCT
66 GGGGACCCGACCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG-CCCGCACGCT
* * * * *
5458591 CGTTTTGTGGGTTGACTTATGCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
130 CGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCAAAGCATACGGAGTTCATTCCC
* * * * *
5458656 AAT-TAAGATCAGACCAGACCGAGTGTTGCAGTGGCACATGCTAGGCTCGGGCATGTGCTGGTGC
195 AGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
** * * * * * * *
5458720 TGCATTTTTCTTCGTTGGGG---CAT-----CATCGCCGAAGAACCCGACCGGCAGAATTGGGGT
260 CACATTTTTCTTCGTCGGGGCACCATCACAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGT
*
5458777 TCC-ACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCC
325 TCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* ** * *
5458841 CTTATATAT--TCCCCTATCCCTCATCAAAAATCGAGAACTCACACCCCCTTAAAAAGTATTTGA
388 CTTATAT-TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
5458904 GATTTTACAAGTTTGTTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGACACTTTTTTCAAATGG
452 GATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
5458969 TCACAAAATCTTGTACACTTTGAGCTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAACACAA
517 TCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * *
5459034 GGATCACGTCTACGATGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCA
582 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCA
*
5459099 TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
647 TAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
5459164 GCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATCCAGAAATATGAAG
712 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
*** * * * * * *
5459229 ATGTGGAAAAACCCACCTATCACCCTATCGATCCATGGGTTGCGCATCTCATCTCTCTGGCCGAC
777 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* *
5459294 GTAGTGCCCGCCAGCCTGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
842 GTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * * *
5459352 TTCATTCCCTGTCTAAGATCGGATCAAACTGAGGGTTGCAGCAGCAGGATTC-ACAGTATGCAGA
1 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA-TCGACAGCACGCAGA
* * * *** * * * *
5459416 GGGGGACCTGACCAATCCTCGACCTGCGCATCCTATCGCTTTGGACGGCTGAGCGCCTGCACGCT
65 GGGGGACCCGACCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
*
5459481 CGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCAAAGCATACGGAGTTCATTCCC
130 CGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCAAAGCATACGGAGTTCATTCCC
* * * *
5459546 AGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCACATGCTGGGGTCGGGCATGTGCTGGTGC
195 AGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* *
5459611 CACATTTTTCTTCGTTGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGATCGACGGCATTGG
260 CACATTTTTCTTCGTCGGGGCACCATCA-C--AGCATCGTCGGAGAACCTGACCGACGGCATTGG
* * **
5459676 GGTTCCGACGATCGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCAGGTACTTCAC
322 GGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
5459741 CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
387 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * *
5459806 GATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTCTCTAAAATGGGGACATTTTTTTCAAATGG
452 GATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
*
5459871 TCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAGA-AA
517 TCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
** ** **
5459935 GCGATCTTGTCTACCAAGTTCAGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACC
582 G-GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACC
* * *
5460000 GTAAAAAGTTTTAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
646 ATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* *
5460065 GGATTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTAGGCATGCAGAAATATGA
711 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-GGCATGCAGAAATATGA
* * ***
5460130 AGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCGCATCCCGCCTCTCTCATCG
775 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* ** * *
5460195 ACGTAGTGCCC-CCCGCCCACCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACAGAG
840 GCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * *
5460254 TTCATTACCAGTCTAGGATCAAATCAGACCAAGGGTTGCGGTAGCAGGATCGATAGCACGCAGAG
1 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAG
* * * * * *
5460319 GGGGACCCGACCAATCCCCGGCTTGCGTATCCTGCCCCTCTGGCTGGCTGAGCGCCTGCATGCTC
66 GGGGACCCGACCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
*
5460384 GTTT--T--G-TG-----GG--T-T-GA---C-TT---A--C---GCATACGAAGTTCATTCCCA
131 GTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCAAAGCATACGGAGTTCATTCCCA
*
5460423 GTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
196 GTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * * *
5460488 ATATTTTTCTTCATCGGGG------CAC--CATCGTCGGAGAACCTGACTGGCAGTATTGGGGTT
261 ACATTTTTCTTCGTCGGGGCACCATCACAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTT
* ** * *
5460545 CCGGCGATCGGGGGGCCGGGGTGGTGCACGCACATGATGTGCAATGGGTGCTGGAACTTGGCCCT
326 CCGACGATCGGGGGGCCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
*
5460610 TATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
390 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
*
5460675 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
455 TTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
*
5460740 CAAAATCTTGTACACTTTGAG-TTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGA
520 CAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
*
5460804 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTGAAAAAT-CTCGAACCATA
585 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCT-GAACCATA
* * * *
5460868 AAAATTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGC
649 AAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* *
5460933 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAAAAATATGAAGAT
714 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * * * *
5460998 GTACCTAAACCCACCTACCACCCTATCGATCTACGGCTTGCGCATCCCGCCACTCTGACCGGCGT
779 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
** * * *
5461063 AAAGCCCACCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGTATATGGAG
844 AGTGCCCGCCCGCCT----GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * *
5461123 TTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTG-TG--GC---A--G-C-GCA--CAGTG
1 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAG
** * * * ** * *
5461176 GGGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGATTGAGCG-CCGCACACCC
66 GGGGACCCGACCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * *
5461240 GTTTCGTGGGTTGACTTAGGCAAACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCA
131 GTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCAAAGCATACGGAGTTCATTCCCA
* * * * *
5461305 GTCTAAGATCAGACCGGACCGAGCGTTGCGATAGCACATGCCGGGCTCAGGCATGTGCTGGTGCT
196 GTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGC-
* * * * *
5461370 CACATTTTTCTTCGCCGAGGCACCATCGCCAGAGCATCGTCGGAGAACCTAACCGATGGCATTGG
260 CACATTTTTCTTCGTCGGGGCACCAT---CACAGCATCGTCGGAGAACCTGACCGACGGCATTGG
5461435 GGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
322 GGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * *
5461500 CCCTTATATTGGGCCCCTATCCCTCATCAAACCTTGAGAACACACACCCCCTTAAAGAGCATTTG
386 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
5461565 AGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
451 AGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
*
5461630 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
516 GTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * * * ** *
5461695 AGGATCACATCTACCAAGTTTGGAGCCAAAAATCCTTTTGAAAAAAAATTAAAAAAAATCCCGAA
581 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG--AAAAAATTTTAAAAAATCCTGAA
* * * *
5461760 CCACAAAAGGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
644 CCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
5461825 AAGGCTTTAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATA
709 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* * *
5461890 AAGATGTGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTGCGCATCCAGTCTCTCTGGTC
774 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
*
5461955 GGTGTAGTGCCCGCCCGCCTGCCCGCCC
839 GGCGTAGTGCCCGCCCGCCTGCCCGCCC
5461983 ACCTACCACC
Statistics
Matches: 3063, Mismatches: 378, Indels: 169
0.85 0.10 0.05
Matches are distributed among these distances:
856 10 0.00
857 49 0.02
858 1 0.00
859 3 0.00
860 1 0.00
861 3 0.00
863 1 0.00
864 84 0.03
865 249 0.08
866 187 0.06
868 1 0.00
869 69 0.02
870 4 0.00
873 1 0.00
874 1 0.00
876 95 0.03
877 1 0.00
879 2 0.00
881 1 0.00
882 77 0.03
883 16 0.01
884 2 0.00
885 1 0.00
886 1 0.00
887 323 0.11
888 97 0.03
889 83 0.03
890 71 0.02
891 208 0.07
892 6 0.00
893 8 0.00
894 232 0.08
895 78 0.03
897 214 0.07
898 2 0.00
900 167 0.05
901 116 0.04
902 513 0.17
903 85 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAG
GGGGACCCGACCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCAAAGCATACGGAGTTCATTCCCA
GTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
ACATTTTTCTTCGTCGGGGCACCATCACAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTT
CCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
TTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
AAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCATAAA
AAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
TGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
Found at i:5462038 original size:76 final size:76
Alignment explanation
Indices: 5461904--5462058 Score: 240
Period size: 76 Copynumber: 2.0 Consensus size: 76
5461894 TGTGCCTAAA
* **
5461904 CCCACCTACCACCCGATCGATCCACGGCTTGCGCATCCAGTCTCTCTGGTCGGTGTAGTGCCCGC
1 CCCACCTACCACCCGATCGATCCACGGCTTGCGCATCCAGTCTCTCTGGCCGACGTAGTGCCCG-
*
5461969 CCG-CCTGCCCG
65 CCGACCCGCCCG
* *
5461980 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGC
1 CCCACCTACCACCCGATCGATCCACGGCTTGCGCATCCAGTCTCTCTGGCCGACGTAGTGCCCGC
5462045 CGACCCGCCCG
66 CGACCCGCCCG
5462056 CCC
1 CCC
5462059 GCTTGTTTCG
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
75 3 0.04
76 69 0.96
ACGTcount: A:0.12, C:0.47, G:0.22, T:0.19
Consensus pattern (76 bp):
CCCACCTACCACCCGATCGATCCACGGCTTGCGCATCCAGTCTCTCTGGCCGACGTAGTGCCCGC
CGACCCGCCCG
Found at i:5462277 original size:26 final size:26
Alignment explanation
Indices: 5462238--5462293 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
5462228 TGGGTTGACT
5462238 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
*
5462264 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
5462290 TAAG
1 TAAG
5462294 ATCAGACCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:5464457 original size:26 final size:26
Alignment explanation
Indices: 5464427--5464479 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5464417 GTTGACTTAG
*
5464427 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5464453 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5464479 G
1 G
5464480 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5465737 original size:902 final size:895
Alignment explanation
Indices: 5463562--5467026 Score: 4772
Period size: 902 Copynumber: 3.9 Consensus size: 895
5463552 GTTGACTTAG
* * * *
5463562 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGATGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
5463627 ATCGGGCATGTGCTAGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* *
5463692 ACCTGACCGGCGGCATTGGGGTTCCAGCGATC----GG--GGGGGTTGTGCGCACATGATGTGCG
131 ACCTGACCGACGGCATTGGGGTTCC-GCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
5463751 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
5463816 CCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
5463881 GTACA-CTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTTA
325 G-ACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
5463945 CGTGCCAACAAAAATACTAGGATCACGTCTACCAAGTTTGGGGCCAAAAAGCCTTCCGAAAAAAT
389 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAGCCTTCCAAAAAAAT
* *
5464010 TTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTAC-TG
454 TTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGT-CTTG
* * * *
5464074 CCACGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTTCAAGCCATAAAAAAGACAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCAT
* **
5464139 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTTATGC
583 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
5464204 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGC--CCACCCGCTCATTTTGTCGGTTGGCATA
648 ATCCCGTCTCTCTGGCCGACGTAGTG-CCGCCTGCTGCCGCCCGCTCATTTTGTCGGTTGGCCTA
* * * * * ** * * *
5464267 GG-ATTACGGAGTTCATTCCCAGTATAAGATCAGACTAGACCAAGGGATGCGGCAGCAGGATCGG
712 GGCA-TATGAAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCAGGATCAG
* * * * *
5464331 CAGCACGCGGAGGGGGACTCGGCCTATCCCCGGCTTGCGCATCCCGTCCCTCTGGCCGGTTGAGC
776 CAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGC
* * * *
5464396 ACCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
840 ACCCGCACGCTCGTTTCGT-GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * *
5464453 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGAA-CGAGGGTTGCGCCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGCCTAAGATCAGACC-GAACCGAGGGTTGCGGCAGCACATGCTGG
** * *
5464517 GCTCGGGCATGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATGGCCGGAGCATCCCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * *
5464582 AACATGAACGGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
130 AACCTGACCGACGGCATTGGGGTTCCG-CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
5464647 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
194 GATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
5464712 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATT
259 CCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA-T
*
5464777 GGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGT
323 GGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
5464842 GCATGCCAACAAAAATATAAGGATCACGTCTACCTAGTTTGGGGCCAAAAAGCCTTCCAAAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAGCCTTCCAAAAAAA
** *
5464907 TTTTAAAAAATGTCAAACCGCAAAAAGTTTCCAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
453 TTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* **
5464972 CCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAAAGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCAT
** * *
5465037 AAGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGC
583 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
5465102 ATCCCGTCTCTCTGACCGGCGTAGTGCTCGCCTGCTTGTCGGCACGCTCGTTTTGTCGGTTGGCC
648 ATCCCGTCTCTCTGGCCGACGTAGTGC-CGCCTGC-TG-CCGCCCGCTCATTTTGTCGGTTGGCC
* *
5465167 TAGGCATATGAAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACAGTAGCAGGATCA
710 TAGGCATATGAAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCAGGATCA
* * * *
5465232 GCGGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCTAGCCCCTCTAGCC-GCTGAG
775 GCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATC-CGCCCCTCTGGCCGGCTGAG
*
5465296 CACCCGCACGCTCGTTTCGTGGCTTGACTTAGGCATACTAAGTTCATTCCCAGTCTAA
839 CACCCGCACGCTCGTTTCGTGG-TTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * *
5465354 GCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGAACCGAGGGTTACGGTAGCATATGCTTGG
1 GCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* *
5465419 CT-AGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * ** * *
5465483 ACTTGACCGACAGCATTGCTGCTCCTGCGATCAGGGGGGTCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCC-GCGATC-GGGGGG-CCGGGGGGTGTGCGCACATGATGTG
* * * *
5465548 TGATGGCTGCCAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
193 CGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
5465613 ACCCCCTTAAAGAGCATTTAAGATTTTACATGTTTGCTACCAGTAGCCATTAAATTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
* * *
5465678 GGAGACATTTTTTTCAAATGGTCACCAAATCTTTTACACTTCGAGTTTTTAGCTGAATTTTTTTA
323 GG-GACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* **
5465743 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAGCCTTCCAAAAAA
** * * *
5465808 ATTTTAAAAAATCCTGAACCACAAAAAATTTCGAAAATCATGAAAAAAAGAAAACGAGTCGTCTT
452 ATTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
5465873 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCA
** * *
5465938 -TGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGGCTTGCG
582 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
5466002 CATCCCGTCTTTCTGGCCGACATAGTGCCGGCTCGCTCGCCCGCCCGCTCATTTCGTCAGTTGGC
647 CATCCCGTCTCTCTGGCCGACGTAGTGCCGCCT-GCT-G-CCGCCCGCTCATTTTGTCGGTTGGC
* *
5466067 CTAGGCATAT-AGAGTTCATTCCCAATCTAAGATTGGACCAGACTGAGGGTTGCGGTAGCAGGAT
709 CTAGGCATATGA-AGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCAGGAT
* * *
5466131 CAGCAGCACGCAAAGGGGGACCCGGTCGATCCCCGGCTTGTGCATGCCGCCCCTCTGGCCGGCTG
773 CAGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGGCTG
* *
5466196 AGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAA
837 AGCACCCGCACGCTCGTTTCGT-GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
** ** *
5466256 GCATACGGAGTTCATTCCCAGCCTAAGATTGGACCGAACCGAGGGTTGCGATAGCACATGCTTGG
1 GCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
5466321 -TTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* *
5466385 ACCTGACCGACGGCATTGGGGTTCCGGCGATAGAGGGGGCCGGGGGGTGTGCGCACATGATGTAC
131 ACCTGACCGACGGCATTGGGGTTCC-GCGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
5466450 GATGGGTGCCGATAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
5466515 -CCCCTTAAAGAGCATCTAAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
259 CCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT-
* *
5466579 GGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAATTTTTTGT
323 GGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
5466644 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAGCCTTCCAAAAAAA
* * *
5466709 TTTTAAAAAATCCCGAACC-CAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
453 TTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * * * * *
5466773 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGAGTTCACGAGGCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCAT
* * *
5466838 TGGCACGTAGAAATCTAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCCTGCGC
583 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** ** * * * * * * * * ** *
5466903 ATTTCGTCTCTCTAACCAACGCAGTTCGCACCCGCCTGCCCGCCCGTTCGTCTCATCGGTTGGCT
648 ATCCCGTCTCTCTGGCCGACGTAGTGC-CGCCTG-CTG-CCGCCCGCTCATTTTGTCGGTTGGCC
* * * * * * *
5466968 TAGGCATACGGAGTTCATTCCCAGTCTAACATCAGACCGGACCGAGGGTTGCGGCAGCA
710 TAGGCATATGAAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCA
5467027 CATGCTGGGC
Statistics
Matches: 2286, Mismatches: 251, Indels: 65
0.88 0.10 0.02
Matches are distributed among these distances:
890 1 0.00
891 143 0.06
892 2 0.00
895 2 0.00
897 150 0.07
898 324 0.14
899 99 0.04
900 432 0.19
901 425 0.19
902 705 0.31
903 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
GCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGG
ACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAGCCTTCCAAAAAAATTT
TAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGG
CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGACGTAGTGCCGCCTGCTGCCGCCCGCTCATTTTGTCGGTTGGCCTAGGCA
TATGAAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCAGGATCAGCAGCA
CGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCGCCCCTCTGGCCGGCTGAGCACCCGC
ACGCTCGTTTCGTGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:5466281 original size:26 final size:26
Alignment explanation
Indices: 5466230--5466282 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5466220 GTTGACTTAG
*
5466230 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAACCTAA
* *
5466256 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGAAGTTCATTCCCAACCTAA
5466282 G
1 G
5466283 ATTGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAACCTAA
Found at i:5468740 original size:874 final size:876
Alignment explanation
Indices: 5466940--5470401 Score: 4185
Period size: 907 Copynumber: 3.9 Consensus size: 876
5466930 GCACCCGCCT
* * * * * *
5466940 GCCCGCCCGTTCGTCTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA-CA-TC-A
1 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAAGCATTCGA
* * *
5467002 GA-C-C-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATTTGCTGGTGCCGCATTATT
66 GATCACTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * *
5467064 CTTCG-CTGGGGCACCATCGCTAGAGCATCGTCGGAGAACCTGATCGGCGGCATTGGGGCTCCGA
131 CTTCGTC-GGGGCACCATCGC-GGAGCATCGCCGGAGAACCTGATCGACGGCATTGGGGTTCCGA
* * * ** *
5467128 CGATTGGGGAGGCCACGGGGGGGTGTGTGCAAATGATGTGTGATGGGTGCTGGTACTTGGCCCTT
194 CGATCGGGG-GG-C-CGGGGGGGTGTGCGCACATGATGTGCAATGGGTACTGGTACTTGGCCCTT
* * *
5467193 ATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTCAAAGAGCATTTGAGATT
256 ATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAAAGCATTTGAGATT
* * *
5467258 TTACAGGTTTGCTACCAGTAGCCATTAAAGAGTCTGAAATGGGGATACTTTTTTCAAATGGTCAC
321 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * * *
5467323 AAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTTTTTGTGCAGGGCAAAAAAAATACAAGGAT
386 AAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * ** * *
5467388 TACGTCTACCAAGTTTGGAGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAA
451 CACGTCTACCAAGTTTGG-GGCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAA
** * * *
5467453 AAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTGAAGGCTT
515 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTT
*
5467518 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCACATAGAAATATGAAGATGT
580 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGT
* *
5467583 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATTG
645 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTGG
* * * * *
5467648 TGCCCACCCGCTCG-C-CCCCTTGTTTCATCGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTC
710 TGCCCGCCCGCACGCCGCCCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * ** * * *
5467711 TAAGATCAGACCAGACCTAGTGTTGCGGCAGTAGGATCGACAGCATGCAAAGGGGGACCCAACCG
775 TAAGATCGGACCAGA-CGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGA-CCGACCG
* * * * * *
5467776 ATCCCCGGCTTGCACATCCCGCCCCTCTAGCCGACTGAGT
838 ATCCTCGACTTGCGCATCCC-ACCCTCTAGCCGGCTGAGC
* * *
5467816 GCCCGCACGCTCGTTTCGTAGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAAG-A-TCG-
1 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAAGCATTCGA
* * *
5467878 GA-C-C-AGACCGAGGGTTGTGGCAGCTCATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTT
66 GATCACTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * *
5467940 CTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGACAACCTGAACGACGGCATTGGGGTTCCGGC
131 CTTCGTCGGGGCACCATCG-CGGAGCATCGCCGGAGAACCTGATCGACGGCATTGGGGTTCCGAC
* * *
5468005 AATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCAATGGGTACTGGTACTTGCCCCTTTTA
195 GATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTACTGGTACTTGGCCCTTATA
*
5468069 TTGGCCCCTTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTA
259 TTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTA
5468134 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
324 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
5468199 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC-AGAGATCA
389 ATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG-GATCA
* * * * *
5468263 CGTCTACCAAGCTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAAAT-TCCAAATCGTAAA
453 CGTCTACCAAGTTTGGGG-CAAAAATCCTTCCGAAAAAATTTT-AAAAAATCT-CGAACCGCAAA
*
5468327 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACATGAAGGCTT
515 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTT
* *** * *
5468392 AAGGTACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGCTAT
580 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGT
* **
5468457 GCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTGG
645 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTGG
* * * *
5468522 TG-CCGCCCGCACGCCTGCCCCTCATTTCGTTGGCTGGCTTAGGCATACGGAGTTCATT-CCAAT
710 TGCCCGCCCGCACGCC-GCCCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
** * * ****
5468585 CTAAGATCGGGTCAGATCGAGGGTTGCGGTAGCAGGATTGGTAGCACGGAGACAATGATCCGACC
774 CTAAGATCGGACCAGA-CGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGA-CCGACC
*
5468650 AATCCTCGACTTGCGCATCCCACCCTCTAGCCGGCTGAGC
837 GATCCTCGACTTGCGCATCCCACCCTCTAGCCGGCTGAGC
* * *
5468690 GCTCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATTCGA
1 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAAGCATTCG-
** * *
5468755 AGTTCATTCCCAATCTATGATCGGATTAGACTGGATCGAGGATTATGGCAGCAAATGCTGGGCCC
65 AG---A-T--C-A-CTA-GA-C--------C--GA--G-GG-TTGCGGCAGCACATGCTGGGCTC
* * * * *
5468820 AGGCATGTGCTGGTGCCGTATTTTTTTTTGTCGGGGCACCATCGTCGGAGCATCCCCGGAGAACC
106 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGCCGGAGAACC
* * * * * *
5468885 TGATCGATGACATTGGGGTTTCGATGATCGAGGGGGCCGGGGGGGGTGTGCGTACATGATGTGTA
170 TGATCGACGGCATTGGGGTTCCGACGATCG-GGGGGCC-GGGGGGGTGTGCGCACATGATGTGCA
* * *
5468950 GTGGGTACTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGACAACTCACAC
233 ATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACAC
* *
5469015 ACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
298 CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
5469080 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
363 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
* * * ** * ** *
5469145 CATGCCAA-AGAAAATACAAGGATCATGTCTACCAGGTTCGGGGGGAAACTCCTTTTGAGAAAAT
428 CATGCCAACA-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAATCCTTCCGAAAAAAT
* * *
5469209 TTT-AAAAATCTGGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCCTGC
492 TTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGC
*
5469273 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGGATT
557 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
5469338 GGCACATAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCACA
622 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * *
5469403 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCCTACTCGTTTCGTCGGTTGGCTT
687 TCCCGTCTCTCTGGCCGACGTGGTGCCCGCCCGCACG-CCGCC-CCTCGTTTCGTCGGTTGGCTT
* *
5469468 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGATAGCAGGATCGG
750 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC-GAGGGTTGCGGTAGCAGGATCGG
* * * * *
5469533 TAGCACTCAGAGGGGGACCTGATCGATCCTCGAATTACGCATCCCACCCCTCTGGCCGGCTGAGC
814 TAGCACGCAGAGGGGGACC-GACCGATCCTCGACTTGCGCATCCCA-CCCTCTAGCCGGCTGAGC
* * *
5469598 GCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGCTCATTCCCAGTCTAAGCATATGG
1 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC----C--A---
* * *
5469663 AGTTCATTCCTAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGTTTGGC-CTGGGC
57 AG--CATT-C--G----AGATC--ACTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC-GGGC
* * *
5469727 ATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCA--A---C--ATCAT---CGGAGAACCTGACC
110 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCGCCGGAGAACCTGATC
** * * * *
5469782 GACGGCATTGGGGTTCTAACGATCGGGGGAGCCGGGGGGGTGTGGGAACATGATATGCGATGGGT
175 GACGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGTGCAATGGGT
* * * *
5469847 GCTGGTGCTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
239 ACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCCTT
* * *
5469912 AAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGACTAAAATGGGGACAC
304 AAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * **
5469977 TTTTTTGAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGTGCACACC
369 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
5470042 AACAAAAATACAAGGATCATGTCTACCAAGTTTCGGGCAAAAACTCCCTCTGAAAAAATTTTAAA
434 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAA-TCCTTCCGAAAAAATTTTAAA
*
5470107 AAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
498 AAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAA
* * **
5470172 ACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTACCAGCCATAAAAATGGCATTGGCATG
563 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
* *
5470237 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCACGGCTTGCGCATCCTGT
628 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* *
5470302 CTCTCTGGCCGACGTGGTGCCCGCCCGCA---CG---CTCGTTTCGTGGGTTGACTTAGGCATAC
693 CTCTCTGGCCGACGTGGTGCCCGCCCGCACGCCGCCCCTCGTTTCGTCGGTTGGCTTAGGCATAC
* *
5470361 GGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTT
758 GGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CGAGGGTT
5470402 ACGGCAACAC
Statistics
Matches: 2237, Mismatches: 270, Indels: 149
0.84 0.10 0.06
Matches are distributed among these distances:
872 3 0.00
873 268 0.12
874 265 0.12
875 68 0.03
876 205 0.09
877 5 0.00
878 1 0.00
881 1 0.00
885 65 0.03
886 1 0.00
888 1 0.00
889 3 0.00
890 2 0.00
891 246 0.11
892 51 0.02
893 208 0.09
895 4 0.00
897 1 0.00
899 1 0.00
901 3 0.00
902 1 0.00
903 50 0.02
904 198 0.09
905 122 0.05
906 58 0.03
907 316 0.14
908 68 0.03
909 1 0.00
914 1 0.00
917 3 0.00
918 2 0.00
919 7 0.00
920 2 0.00
921 1 0.00
922 2 0.00
925 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (876 bp):
GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAAGCATTCGA
GATCACTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
CTTCGTCGGGGCACCATCGCGGAGCATCGCCGGAGAACCTGATCGACGGCATTGGGGTTCCGACG
ATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTACTGGTACTTGGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
CTACCAAGTTTGGGGCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTT
CAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAA
ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTGGTGCCCG
CCCGCACGCCGCCCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
CGGACCAGACGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCGACCGATCCTCGA
CTTGCGCATCCCACCCTCTAGCCGGCTGAGC
Found at i:5469669 original size:26 final size:26
Alignment explanation
Indices: 5469629--5469681 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5469619 GTTAACTTAG
5469629 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
* * *
5469655 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
5469681 G
1 G
5469682 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:5472122 original size:550 final size:555
Alignment explanation
Indices: 5471123--5472164 Score: 1717
Period size: 550 Copynumber: 1.9 Consensus size: 555
5471113 GGGTTATGGT
5471123 AGCACATGCTGGGCTCGGGCATGTGCTGGAGCCACATTTTTCTTCATCGAGGCACCATTGCCGAA
1 AGCACATGCTGGGCTCGGGCATGTGCTGGAGCCACATTTTTCTTCATCGAGGCACCATT-CC--A
* * * * *
5471188 GCATCGCCAGAGAACCTGACCGGTGGTATTGGTGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGC
63 G-ATCG-C-GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTATGC
5471253 GCACATGATGTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
125 GCACATGATGTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
5471318 TCGAGAACTCACACCCCCTTAAAGAGCATTTGCGATTTTACAGGTTTGCTGCCAGTAGACATTAA
190 TCGAGAACTCACACCCCCTTAAAGAGCATTTGCGATTTTACAGGTTTGCTGCCAGTAGACATTAA
5471383 AGTGTCTGAAATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGC
255 AGTGTCTGAAATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGC
* * *
5471448 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGTGCCAAACTC
320 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACTC
5471513 CTTCGAAAACAATTTTAAAAAATCCTGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
385 CTTCGAAAACAATTTTAAAAAATCCTGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
*
5471578 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTATGGAGTTCCCAGTCTAAGCATATGGAGT
450 CGAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTATGGAGTTCCCAGTCTAAGCATATGGAGT
5471643 TCATTTTTGGTCTAAGATCGGATCAGACCAAGGGTTGCGGC
515 TCATTTTTGGTCTAAGATCGGATCAGACCAAGGGTTGCGGC
* * *
5471684 AGCACATGCTGGGCTCGGGCATGTGCT-GATGCCGCATTTTTCTTTATCGGGGCACCA-T-C-G-
1 AGCACATGCTGGGCTCGGGCATGTGCTGGA-GCCACATTTTTCTTCATCGAGGCACCATTCCAGA
* *
5471744 TCG-GAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGTGTATGCGCACA
65 TCGCGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTATGCGCACA
* *
5471808 TGAT-TAGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
130 TGATGT-GCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
*
5471872 GAACTCACA-CCCCTTAAAGAGCATTT-CAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
194 GAACTCACACCCCCTTAAAGAGCATTTGC-GATTTTACAGGTTTGCTGCCAGTAGACATTAAAGT
* * *
5471935 GTTTGAAAT-TGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACAGTTTGAGTTTTTAGCTG
258 GTCTGAAATGT-GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG
*
5471999 AATTTTTTTGTGCATGCCAAAAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
322 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAACTCC
*
5472064 TTCGAAAACAATTTTAAAAATTCCTGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAC
386 TTCGAAAACAATTTTAAAAAATCCTGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAC
5472129 GAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
451 GAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
5472165 AGGGACCATT
Statistics
Matches: 454, Mismatches: 22, Indels: 21
0.91 0.04 0.04
Matches are distributed among these distances:
548 2 0.00
549 164 0.36
550 229 0.50
553 3 0.01
555 1 0.00
558 1 0.00
560 3 0.01
561 51 0.11
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (555 bp):
AGCACATGCTGGGCTCGGGCATGTGCTGGAGCCACATTTTTCTTCATCGAGGCACCATTCCAGAT
CGCGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTATGCGCACAT
GATGTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGCGATTTTACAGGTTTGCTGCCAGTAGACATTAAAGTGTC
TGAAATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT
TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACTCCTTCGA
AAACAATTTTAAAAAATCCTGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAATC
GTCTTGCCATGAAACTTCACGTGAAGGCTTATGGAGTTCCCAGTCTAAGCATATGGAGTTCATTT
TTGGTCTAAGATCGGATCAGACCAAGGGTTGCGGC
Found at i:5472537 original size:26 final size:26
Alignment explanation
Indices: 5472497--5472549 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
5472487 GTTGACTTAG
5472497 GCATACGGAGATCATTGCCC-GTCTAA
1 GCATACGGAGATCATT-CCCAGTCTAA
* *
5472523 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
5472549 G
1 G
5472550 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:5473443 original size:26 final size:26
Alignment explanation
Indices: 5473406--5473458 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
5473396 GTTGACTTAG
5473406 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5473432 GCATAC-GAAGTTCGTTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
5473458 G
1 G
5473459 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5473798 original size:905 final size:901
Alignment explanation
Indices: 5471620--5475987 Score: 5902
Period size: 905 Copynumber: 4.8 Consensus size: 901
5471610 GCTTATGGAG
* **** * *
5471620 TTCCCAGTCTAAGCATATGGAGTTCATTTTTGGTCTAAGATCGGATCAGACCAAGGGTTGCGGCA
1 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
* *
5471685 GCACATGCTGGGCTCGGGCATGTGCTGATGCCGCATTTTTCTTTATCGGGGCACCA---TC---G
66 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAG
* * *
5471744 -----TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCG-GGGGGGCCGGGGTGTATGC
131 CATCATCGGAGAACCTGACCGGCGGCATTGGGGTT-CGATGATCGAGGGGGGCGGGGGGGTGTGC
*
5471803 GCACATGAT-TAGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
195 GCACATGATGT-GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
5471867 CTCGAGAACTCACA-CCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
259 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * * * *
5471931 AAGTGTTTGAAATTGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACAGTTTGAGTTTTTAG
324 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
*
5471996 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAAC
389 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * *
5472061 TCCTT-CGAAAACAATTTTAAAAATTCCTGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGA
454 TCCTTCCGAAAA-AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGA
*
5472125 AAACGAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
518 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*
5472190 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
583 CCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * * *
5472255 ATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGACCGC-CTACCCGCCCGCCCGTTC
648 ATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGT-TCCGCTC-GCCCGCCCCCCCGCTC
* ** *
5472319 ATTTCGTCGGTTGGCTTAGGCATATAGAGTTCATTCCCTA-TCTAAGATCAGATCAGACTAAGGG
711 ATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCAGACTAAGGG
* * * *
5472383 TTGTGGCAGCAGGATCGACAGCACCCAGAGGGGGACTCTGTCGATCCCCGACTTGCGCATCCCGC
775 TTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGAT-CCCGACTTGCGCATCCCGC
* * *
5472448 CCCTCTGGCCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGATCA
839 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * *
5472511 TTGCCC-GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGTGGGTTGCGGC
1 TT-CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGC
* * * * *
5472575 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTTGGTGTACCATCGTCGGA
65 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGA
** * ** * * *
5472640 GCATCGCCGGAGAACCTGACCGACGGCATCAGGGTTCCGGTGATTGAGGGGGTCGGGGGGGGTGT
130 GCATCATCGGAGAACCTGACCGGCGGCATTGGGGTT-CGATGATCGAGGGGGGC-GGGGGGGTGT
* * * * ** *
5472705 GGGCACATGATGTGCAACGGGTGCTGGTACTTGACCCTTATATTGGCAACCTATCCCTAATCAAA
193 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
*
5472770 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATT
258 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
5472835 AAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
323 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * * * * * *
5472900 GCTGAATTGTTTTGTGCATGACAACAAAAATACAAGGATCATGTATAACAAGTTTGGGACCAAAC
388 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * *
5472965 CCCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTCAAAATCGTGAAAAATAGA
453 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGA
* * * *
5473030 AAACTAGTTGTCCTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
518 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
5473095 CCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
583 CCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
** * *
5473160 ATCCACAACTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTTCCTGCTCGCCCGTCCGCCCACCAG
648 ATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTTCC-GCTCGCCCG-CC-CCC-CC-G
* * * ***
5473225 CTCGTTTCGTCGATTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGAT-TGAATTGGA-TCA
708 CTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACT-A
* * * * ** * *
5473288 AGGGTTGTGGCAGCAAGATCGGCAACATACAGTGGAGGACCCGGTCGATCCTCGACTTGCGCATC
771 AGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCC-CGACTTGCGCATC
* * *
5473353 CCGTCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTT
835 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
5473418 CA
900 CA
* * * * *
5473420 TTCCCAGTCTAAGCATACGAAGTTCGTTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGCA
1 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
* * *
5473485 GCACATGCTGGTCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAG
66 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAG
* * * * *
5473550 CATCATCAGAGAACCTGACCAGCGTCATTGGGGTT-GAGCGATCGAGGGGGTCGGGGGGGTGTGC
131 CATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCGA-TGATCGAGGGGGGCGGGGGGGTGTGC
* * *
5473614 GCACATGATGTGTGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACC
195 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
5473679 TCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAA
260 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
5473743 AGTGTCTGAATTGGTGACACTTTTTTCAAATGGTCACAAAAT-TTGTACGCTTCGAGTTTTTAGC
325 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * **
5473807 TGCATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAAAAAGTTTGGGGCCAAAACT
390 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * * **
5473872 CCTTCCGAAAATATTTTAAAAAATCCCTAACCGCAGAAAGCTTCAAAAATCGTGAAAAATAGAAA
455 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
5473937 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
520 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
5474002 ATAAAAATGGCATTGGCATGTAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
585 ATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * *
5474067 CCACGGCTTGCGTAGCCCGTCTCTTTGGCCGACGTAGTTCACG-TCCGCCCGCCCGCCCGCCCGC
650 CCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTTC-CGCT-CGCCCG--C-CCC-CCCGC
* * * * *
5474131 TCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCATACTAGACTGAGG
709 TCATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGG
* * * * * *
5474196 GTTGCAGCAGCAGGATC-AGCAGCATGCAGAGGGGGACCCGATCGATCCCCAGCTTGTGCATCCT
774 GTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGGTCGATCCCGA-CTTGCGCATCCC
5474260 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
837 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * *
5474325 TTCTCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGTGGCA
1 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
* * * * *
5474390 GCACATGCTGAGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCACCGAGGCACCATCGTCGGAG
66 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAG
* * * *
5474455 CATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATAATTG-GGGGGCCGGGTGGGGGGTG
131 CATCATCGGAGAACCTGACCGGCGGCATTGGGGTT-CGATGATCGAGGGGG--GCG-GGGGGGTG
*
5474519 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAA
192 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
5474584 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTCA-CCA
257 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT-AGCCA
* * * *
5474648 TTAAAGTGTCTGAAATGGGGAAACTTTTTTCAAATGCTCACAAAATGTTGTACACTTTGAGTTTT
321 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
5474713 TAGCTGATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCTAGTTTGGAGCCAA
386 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * *
5474778 AAATCCTTCCGAAAAATTTTTAAAAAATCCCGAACCATAAAACGTTTTGAAAATCGTGAAAAATA
451 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATA
* *
5474843 GAAAACGATTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
516 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
*** *
5474908 AGCCATAAAAATGGCATTGGCGCATAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTAT
581 AGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * *
5474973 CGATCCACGGCTTTCGCATCCCGTCCCTTTGGCCGGCGTAG-T--GCCCGCCCGCCCGCCCGCTC
646 CGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTTCCGCTCGCCCGCCCCCCCGCTC
* * * *
5475035 GTTTCGTC-AGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCATGACCGGACTGAGG
711 ATTTCGTCGA-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCAGACTAAGG
* * * * *
5475099 GTTGCGGTAGCAGGATTGACAGCACGGAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCAACCCG
774 GTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCC-GACTTGCGCATCCCG
* * *
5475164 CCCCT-TAGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGAAGTTCA
838 CCCCTCT-GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
5475228 TTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTA
1 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
* * * * * *
5475293 GCACATGCTGGGCACGAGCATTTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCAGAG
66 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAG
* * * * *
5475358 CATCGTCGGAGAACCTAACCGGCGACATTGGGGTTCCG--G-TCAACGGGGGGCTGGGGGGTGTG
131 CATCATCGGAGAACCTGACCGGCGGCATTGGGGTT-CGATGATCGA-GGGGGGCGGGGGGGTGTG
* * *
5475420 CGCACAAGATGTGCGATGGATGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAAC
194 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
5475485 CTTGAGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
259 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
5475550 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
324 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * * *
5475615 CTGAATTTTTTTGTGCATGCCAAGAAAATTACAAGGATCACCTCAACCAGGTTTGGGGCCAAAAC
389 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* ** * * *
5475680 TCCTTCCAAAAAAAGTTTTAAAAAAATCTTGAAACCGCAAAAAGTTTTGAAAATCATGAAAAAAA
454 TCCTTCCGAAAAAA-TTTT-AAAAAATCCCG-AACCGTAAAAAGTTTTGAAAATCGTGAAAAATA
* *
5475745 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACT
516 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
5475810 AGCCAAAAAAATGGCATTGGCATGCAGAACTATGAAGATGTGCCTAAACCCACCTACCACCCTAT
581 AGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * ** *
5475875 CGATCCACGGCTTGCGCATCTCGTCTCTTTGGCCGGCGTAG---CGCCCGCCCACCTGCCCGGTC
646 CGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTTCCGCTCGCCCGCCCCCCCGCTC
* * *
5475937 GTTTCGTC-AGCTGGCTTAGGAATACGGAGTTC--TCCCAGTCTAAGAATCAGA
711 ATTTCGTCGA-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGA
5475988 TGCACCGAAG
Statistics
Matches: 3070, Mismatches: 347, Indels: 111
0.87 0.10 0.03
Matches are distributed among these distances:
891 102 0.03
892 3 0.00
894 2 0.00
897 1 0.00
898 1 0.00
899 261 0.09
900 19 0.01
901 13 0.00
902 324 0.11
903 276 0.09
904 84 0.03
905 998 0.33
906 77 0.03
907 125 0.04
908 144 0.05
909 352 0.11
910 288 0.09
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAG
CATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCGATGATCGAGGGGGGCGGGGGGGTGTGCG
CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTTCCGCTCGCCCGCCCCCCCGCTCATTTC
GTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTTGCGG
CAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCGACTTGCGCATCCCGCCCCTCTG
GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
Found at i:5474348 original size:26 final size:26
Alignment explanation
Indices: 5474311--5474363 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5474301 GTTGACTTAG
* *
5474311 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5474337 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5474363 G
1 G
5474364 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5475244 original size:26 final size:26
Alignment explanation
Indices: 5475214--5475266 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5475204 GTTGACTTAG
* *
5475214 GCATATGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5475240 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5475266 G
1 G
5475267 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5476843 original size:26 final size:26
Alignment explanation
Indices: 5476807--5476859 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5476797 GTTGACTTAC
* *
5476807 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5476833 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5476859 G
1 G
5476860 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5479191 original size:26 final size:26
Alignment explanation
Indices: 5479161--5479213 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5479151 GTTGACTTAG
*
5479161 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5479187 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5479213 G
1 G
5479214 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5481312 original size:26 final size:26
Alignment explanation
Indices: 5481283--5481361 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
5481273 CTGATTTGAT
*
5481283 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5481309 CTTAGACTGGGAATGTACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5481335 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5481361 C
1 C
5481362 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5482977 original size:26 final size:26
Alignment explanation
Indices: 5482948--5483000 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5482938 AACCTCCGAT
* *
5482948 CTTAGAATGGGAATGAACTCCATATG
1 CTTAGAATAGCAATGAACTCCATATG
* *
5482974 CTTAGACTAGCAATGAACTCCGTATG
1 CTTAGAATAGCAATGAACTCCATATG
5483000 C
1 C
5483001 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGAATAGCAATGAACTCCATATG
Found at i:5483861 original size:26 final size:26
Alignment explanation
Indices: 5483832--5483884 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5483822 CCGGTTTGAT
5483832 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
5483858 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
5483884 C
1 C
5483885 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:5484760 original size:26 final size:26
Alignment explanation
Indices: 5484722--5484774 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5484712 CCAGTCTGAT
5484722 CTTAAACTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
* *
5484748 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
5484774 C
1 C
5484775 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGTATG
Found at i:5485653 original size:26 final size:27
Alignment explanation
Indices: 5485624--5485681 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
5485614 TCGATCCGAT
5485624 CTTAAG-CTGAGAATGAACTCCGTATG
1 CTTAAGACTGAGAATGAACTCCGTATG
*
5485650 CTT-AGACTGGGAATGAACTCCGTATG
1 CTTAAGACTGAGAATGAACTCCGTATG
*
5485676 CCTAAG
1 CTTAAG
5485682 TCAACCCATG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 2 0.07
26 24 0.86
27 2 0.07
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (27 bp):
CTTAAGACTGAGAATGAACTCCGTATG
Found at i:5485982 original size:902 final size:899
Alignment explanation
Indices: 5483412--5486481 Score: 4234
Period size: 902 Copynumber: 3.4 Consensus size: 899
5483402 AACGGTTCGA
** * ** *
5483412 AAGGAGTTTTGGCCCCACGCTTGGTAGATGTGAGGCTTCTATTTTTGTTGGCATGCACAAAAAAA
1 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAA
*
5483477 TTCAGCTAAAAGCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA-
66 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT-AAG
* *
5483541 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTT
130 ACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * ** * *
5483606 CTCAAGGTTTGATTAGGGATAGGGGGCCAATATAAGGGCCACCTACCAGTACCCATTGCACATCA
195 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCA
* *
5483671 TGTGTGCACACCCCCC-GCGGCCCCCCGATCATCGGAACCCCAATGCCACCGGTCAGGTTCTCCG
260 TGTGCGCACACCCCCCAGC--CCCCCCGATCACCGGAACCCCAATGCCACCGGTCAGGTTCTCCG
* * * ** *
5483735 GCGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATACAACACCAGCACATGCCCGAGCCCAGC
323 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAG-CCAGC
* * * * *
5483800 ATGTGCTATCGCAACCCTCGGTCCGGTTTGATCTT-AGACTGGGAATGAAATCCGTATGCTTAGA
387 ATGTGCTGTCGCAACCCTCGGT-CGATCTGATCTTAAG-CTGAGAATGAACTCCGTATGCTTAGA
* *
5483864 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCGT-AGAACGAGCGTGCGGGTGCTTAACCGGCC
450 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA-AACGAGCGTGCGGGTGCTCAACCGGCC
* * ** * * * * *
5483928 AGAGGGGCGAGATGCGCAAGTCAGGGATCGG-CCAGTCACCTTCTGCGTGCTACCGATCCTACTG
514 AGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCGATCCTGCTA
* *
5483992 CTGCAACCCTCGATCTGGTTTGATCTTAGACTGGGAATGAACAT-CGCATGCCTAAGCCAACCGA
579 CCGCAACCCTCGAT-TGGTTTGATCTTAGACTGGGAATGAAC-TCCGTATGCCTAAGCCAACCGA
* * * *
5484056 TGAAACGAGC-AGAAGGACGGGCAGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCC
642 TGAAACGAGCGGGAAGG-CGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCC
5484120 GTCGATCGATA-GGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
706 GT-GATCGATAGGGA-GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
5484184 TTTATGGCTTGTAAATTAATACAATTGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGA
769 TTTATGGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGA
* *
5484249 CTTGTTTTCTATTTTGCACGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTAAAAATTTTTTTG
834 CTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTTG
5484314 G
899 G
* *
5484315 ACGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGTACAAAAAAA
1 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAA
*
5484380 TTCGGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGA
66 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGA
* * *
5484445 CACTTTAATGGCTACTTGCAACAAACCTGTAAAAT-T-AAATGCTTTTTTAGGGGGTGTGAGTTC
131 CACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * * *
5484508 TTGAGGTTTGATGAGGGATAGGGGGCCAATGT-AAGCACCTAGTGCCAGCACCCATCGCACATCA
196 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAG-GCCAAGTACCAGCACCCATCGCACATCA
* * ** **
5484572 TGAGCGCACACCCCCCCGGCCCCCCCGATCTTCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--
260 TGTGCGCACA-CCCCCCAGCCCCCCCGATCACCGGAACCCCAATGCCACCGGTCAGGTTCTCCGA
* * **
5484634 CG--G-T-----GATGGTGCCCTGGCGAAGAAAAATACGGTGCCAACACATGCCCGAGCCAAGCA
324 CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCC-AGCA
* * * * * *
5484691 TGTGCTGCCGCAACCATTGATCCAGTCTGATCTTAAACT-AGGAATGAACTCCGTATGCTTAGAC
388 TGTGCTGTCGCAACCCTCGGTCGA-TCTGATCTTAAGCTGA-GAATGAACTCCGTATGCTTAGAC
* * *
5484755 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAACCAGCCAG
451 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAACCGGCCAG
* * * **
5484820 AGGGGTGAGATGTGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTATGCTACAAATCCTGCTACC
516 AGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCGATCCTGCTACC
* * * * * *
5484885 ACAACCCTCGATCCGGTTTGATCTTAGACTGGGAAGGAACTCCGTATTCTTAAGCCAACCCATGA
581 GCAACCCTCGAT-TGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
* ** * * * *
5484950 AACGAGAGGGTGGGCAGGCCA-ACGAGCACTACGTCAGCCAGAGAGACGGGATGCGTAAGCCGTG
645 AACGAGCGGGAAGGC-GGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGT-
* * *
5485014 GATCGATAGGGTGGTAGGTGGGTTTAGGCATAGCTTCATATTTCTGCATGCCAATGCCATTTTTA
708 GATCGATAGGGAGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
5485079 TGGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTTG
773 TGGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTTG
*
5485144 TTTTCTATTTTTCACGATTTTTGAAACCTTTTGCGGTTCAAGATTTTTTAAAATTTTTTTGG
838 TTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTTGG
*
5485206 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGAACAAAAAAA
1 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAA
5485271 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGA
66 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGA
* *
5485336 CACTTTAATGGCTACTTGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTAGTTC
131 CACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * ** *
5485401 TTGAGGCTTGATAAGGGATAGGGGGAAAATATAAAGGCCAAGTACCAGCACCCATTGCACATCAT
196 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCAT
* * *
5485466 GTGCGCACACCCCCCAGCCCCCCCGATCACCGGAACCTCAACGCCACCGGTCAAGTTCTCCGACG
261 GTGCGCACACCCCCCAGCCCCCCCGATCACCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACG
* ** *
5485531 ATGCCCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACGTGCCCGAGCTCAGCAT-
326 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGC-CAGCATG
* *
5485595 TGCTGTCGTAACCCTCGGCTCGATCCGATCTTAAGCTGAGAATGAACTCCGTATGCTTAGACTGG
390 TGCTGTCGCAACCCTCGG-TCGATCTGATCTTAAGCTGAGAATGAACTCCGTATGCTTAGACTGG
* * * *
5485660 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCAGGTGCTCAGCTGGCCAGAGG
454 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGG
* * *
5485725 GGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTACCGCA
519 GGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCGATCCTGCTACCGCA
* * * * *
5485790 ACCCTCGGTTAAGTTTGATGTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAAC
584 ACCCTCGATT-GGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC
* *
5485855 GAGCGGGCAGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGAATC
648 GAGCGGGAAGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTG-ATC
* **
5485920 GATAGGGAGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGC
712 GATAGGGAGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* * * * *
5485985 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGAGGACTCGTTTT
777 TTGTAAATTCATACAATTGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTTGTTTT
** * * * *
5486050 CTATTTTTCATAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTATTCGG
842 CTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTTGG
* * * **
5486108 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGGTCCTTGTATTTTTCTTGGCATGCACAAAAACT
1 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAA
* * *
5486173 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCAATTCAGA
66 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGA
*
5486238 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
131 CACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
5486303 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCGCACATCAT
196 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
5486368 GTGCGCACACCCCCTA---CCCCCGATCCCCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACG
261 GTGCGCACACCCCCCAGCCCCCCCGATCACCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACG
* ** **
5486430 ATGCTTCGGCGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAACACATGCC
326 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCC
5486482 ATCGATCCTG
Statistics
Matches: 1917, Mismatches: 216, Indels: 72
0.87 0.10 0.03
Matches are distributed among these distances:
889 3 0.00
890 176 0.09
891 469 0.24
892 52 0.03
893 85 0.04
894 3 0.00
895 3 0.00
896 1 0.00
897 1 0.00
898 2 0.00
899 87 0.05
900 3 0.00
901 125 0.07
902 705 0.37
903 201 0.10
904 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (899 bp):
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGA
CACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCAGCCCCCCCGATCACCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACG
ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCAGCATGT
GCTGTCGCAACCCTCGGTCGATCTGATCTTAAGCTGAGAATGAACTCCGTATGCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGG
CGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCGATCCTGCTACCGCAAC
CCTCGATTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAG
CGGGAAGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGATCGATA
GGGAGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATTGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTTGTTTTCTAT
TTTTCACGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTTGG
Found at i:5487810 original size:26 final size:26
Alignment explanation
Indices: 5487781--5487833 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5487771 CCATTCTGAT
*
5487781 CTTAGACTGGGAATGAAATCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
* *
5487807 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
5487833 C
1 C
5487834 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:5488711 original size:26 final size:26
Alignment explanation
Indices: 5488675--5488725 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
5488665 TCGGTCGATC
5488675 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
5488701 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
5488726 CCTAAGTCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:5489603 original size:26 final size:26
Alignment explanation
Indices: 5489574--5489626 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5489564 CCGATCCGAT
* *
5489574 CTTAGATTGGGAGTGAACTCCGTATG
1 CTTAGATAGGGAATGAACTCCGTATG
5489600 CTTAGATAGGGAATGAACTCCGTATG
1 CTTAGATAGGGAATGAACTCCGTATG
5489626 C
1 C
5489627 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGATAGGGAATGAACTCCGTATG
Found at i:5491402 original size:26 final size:26
Alignment explanation
Indices: 5491373--5491423 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5491363 GATCCGATCA
5491373 TAGACTGGGAAGGAACTCCGTATGCT
1 TAGACTGGGAAGGAACTCCGTATGCT
*
5491399 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAAGGAACTCCGTATGC
5491424 ATAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAAGGAACTCCGTATGCT
Found at i:5491568 original size:905 final size:900
Alignment explanation
Indices: 5486920--5494081 Score: 8974
Period size: 905 Copynumber: 8.0 Consensus size: 900
5486910 CTAGTCTGAT
* *
5486920 CTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * * * * * * * *
5486985 CGGCCAGAGGGGCGGGCTGTGCAAGCTAGGGATCGATCGGGTCCCCTTCTGCATCCTG-TGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGC-GGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * *
5487049 TACTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
130 TGCT-ACGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
5487114 CCGATGAAACGAG-GG-CGGGTGGGCGGGCGGGCACTACGCTGGCCAGAGCGACTGGATGCGCAA
194 CCGACGAAACGAGCGGACGGGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCACAA
* *
5487177 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCATGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
5487242 TTTTTATGGCTTGTAAAATCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
5487307 AACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTATAGTTTGAGATTTTTTAAAATTTTTT
389 GACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTT
* * * *
5487372 CGGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGTATGCATAAAA
454 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
5487437 AAATTCAGCTATAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
5487502 AGACAC-TTAATGACTACT-AGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
584 AGACACTTTAATGGCTACTGA-CAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
5487565 GTTCTCAAGGTTTGATGAGAGATAGGGGACCAATATAAGGGCCAAGTACCTGCACCCATCGCACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * * *
5487630 TCATGTGCACACACCCCCCGCCCCCCCGATCTTCAGAACCCCAATCCCACCGGTCAGGTTCT-C-
713 TCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCG
* *
5487693 -C---G----G-CGATGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGTGCCCAGC
778 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGC
* * * * * *
5487749 ATGTTCTGCCACAACCCTCGGTC-CATTCTGATCTTAGACTGGGAATGAAATCTGTATG
843 ATGTGCTGCCGCAACCCTCGGTCTGA-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
5487807 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * * * * * * *
5487872 CAGTCAGAGGGGCGAGATGCGCAACCCGGAGATTGG-CTGGGTCCCTCTCTACGTGCTGCCAATC
66 CGGCCAGAGGGGCGGGATGCGCAA-GCGGGGATCGGTC-GGGTCCCCCTCTACGTGCTGCCGATC
* ** *
5487936 CTGCTGTCGCAACCCTC-GATCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
129 CTGCT-ACGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
5488000 AACCGACGAAACGA---G--TGGC---C--G-G-GCACTACGTCGACCAGACAGACGTGATGCGC
192 AACCGACGAAACGAGCGGACGGGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCAC
* *
5488053 AAGCCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGCACATCTTCATATTTTTGCATGCCAATGC
257 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
5488118 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAG
322 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * ** *
5488183 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACGTTTTGCGGTTCGGGATTTTTTAAAATTTT
387 ACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTATGGTTCGAGATTTTTTAAAATTTT
* * * *
5488248 TTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAA
452 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-A
* * **
5488313 AAAAAATTTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCAGA
516 AAAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
5488378 TTTCAGACACTTTAATGGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTG
580 TTTCAGACACTTTAATGGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
5488443 TGAGTTCTCGAGGTTTGACGAGGGACAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGC
645 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * * *
5488508 ACATCATGTGCACACACCCCCCCAGCCCCCCTGATCG-CTGAAACCCTAATGCCGTCGGTCAGGT
710 ACATCATGTGCGCACA-CCCCCCGGCCCCCC-GATCGTC-GGAACCCCAATGCCGCCGATCAGGT
* * * * * *
5488572 TCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAACAAAAATGTGGCTCCAACGCATGCCCAAG
772 TCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAG
* * *
5488637 CCCAGCATGTGCCGCCACAACCCTCGGT-TCGGT-CGATCTTAGACTGGGAATGAACTCCGTATG
837 CCCAGCATGTGCTGCCGCAACCCTCGGTCT-GATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * ** * * *
5488700 TTTAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCCGTGAAACAAGCATGCGAGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * ** * *** * *
5488765 CGACAAGAGGGGCGGGATGCATAAGCAGGTGATCAACCGGGTCCCCCTCTGCATGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGC-GGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* ** * **
5488830 TGCTACTGCAACCCTTAGTCCAATCCGATCTTAGACCAGGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTAC-GCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * * *
5488895 CCGATGAAACGAGTGGGTGGGCGGGCGGGCGAGCACTACGTCAGCCAGAGAGACGGGATGCACAT
194 CCGACGAAACGAGCGGACGGGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCACAA
*
5488960 GCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
5489025 TTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCCTCATGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* **
5489090 GACTCGTTTTCTATTTTTCACGACTTTT-GAAAGTTTTTGCGGTTCGAGATGTTTTT-AAATTTT
389 GACTCGTTTTCTATTTTTCACGA-TTTTCGAAACTTTTTATGGTTCGAGAT-TTTTTAAAATTTT
* *
5489153 TTCGGAAGGAG-TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCTCAA
452 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * *
5489217 AAAAATTCAACTAAAAACTCGAAGTGCACAAGATTTTGCGACCGTTTGAAAAAAGTGTCCCCATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
5489282 TCAGACTCTTTAATGGCTACTGACAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTG
582 TCAGACACTTTAATGGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
5489347 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCACCCATTGCAC
647 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * *
5489411 ATCATGTGTGCACATCCCCTGTCCCCCCGATCGTCGGAACCCCAACGCCGCCGGTCAGGTTCTCC
712 ATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCC
* * *
5489476 GGTGATGCTCCGATGATGGTGCCCCAACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAG
777 GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAG
* * * * *
5489541 CATGTGCTACCGCAACCCTCGATCCGATCCGATCTTAGATTGGGAGTGAACTCCGTATG
842 CATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
5489600 CTTAGA-TAGGGAATGAACTCCGTATGCCTATGTCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAA
* * * * **
5489664 TCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGTTCGATCGGGTCCCCCTCTACGTGCTGTTGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATC
* * * * *
5489729 CTACTGCTGCGACCCTCAGTCCGGT-TCAATCTTAGCCTGGGAATGAACTCCGTATGCCTAAGCC
129 CTGCTAC-GCAACCCTCAGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * ** *
5489793 AACCGACGAAACGATCAGG-CGGGCAGGCAGGCGGGCACTACATCGGCCAGAGAGACGGGGTGCA
192 AACCGACGAAACGAGC-GGACGGGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCA
* * * * *
5489857 CAAGTCGTGGATCGATAGGCTGGTGGGTGGATTTAGGCACATCTTCATATTTCTGCATGCCGATG
256 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* *
5489922 CCATTTTTATGGCTTGTAAATTTATACAATGGTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
321 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * *
5489987 GACGACTTGTTTTCTATTTTTCACGATTCTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
386 GACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTATGGTTCGAGATTTTTTAAAATTT
* * * * *
5490052 TTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATGCTTGTACTTTTGTTGGCATGCACA
451 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * * *
5490117 AAAAAAATCAGCTAAAAACTCAAAGTGTAAAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCAT
516 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * *
5490182 TTCAAACACTTTAAAGCCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT
581 TTCAGACACTTTAATGGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT
** * *
5490247 GAGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCACA
646 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
5490312 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCAATCAGGTTCT
711 CATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCT
* * *
5490377 -C--CG--G-T-----GATGGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCTCGAGCCT
775 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCC
* * * * * * * *
5490431 AGCATATGCTGTCG-TACCACTCAGTCTGGTCTGATGTTAGACTGGGAAGGAACTCCGTATG
840 AGCATGTGCTGCCGCAACC-CTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
5490492 CTTAGACTGGGAATGAACTCCGTTTGCCTAAGTCAACCCATGAAATGAGCGTGCGGATGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * *
5490557 CGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* *
5490622 TGCTGCCGCAACCCTCAG-CCAGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 TGCT-ACGCAACCCTCAGTCC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* **
5490686 ACCGACGAAATGAGCGGACGGGCGGGCGGGCGAAAACTACGCCGGCCAGAGAGACGGGATGCACA
193 ACCGACGAAACGAGCGGACGGGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCACA
* * * *
5490751 AGCCGTGGATCGATAGGGTGGCAAGTGGGTTTAGGTACATCTTCATATTTTTGCATGCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
5490816 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
5490881 CGACTCGTTTTCTATTTTTCATGATTTTCCAAACTTTTTTATGGTTCGAGATTTTTTAAAATTTT
388 CGACTCGTTTTCTATTTTTCACGATTTTCGAAAC-TTTTTATGGTTCGAGATTTTTTAAAATTTT
* * * *
5490946 TTTGGAAGGAGTTTTGGCTCCAAACTTGGTAGACGTGATCTTTGTATTTTTGTTGGTATGCACAA
452 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
5491011 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGAATTTGTGACCATTTGAAAAAAGTGTCCCCATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-T
* *
5491076 TTGAGACACTTTCATGGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT
581 TTCAGACACTTTAATGGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *** ** *
5491141 AAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTATGGGCAGTCATTGCA
646 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
5491206 CATCATGTGCGCACACCCCCCGGCCCTCCCGATCGTCGGAACCCCAATGTCGCCGATCAGCTTCT
711 CATCATGTGCGCACACCCCCCGGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCT
*
5491271 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAACACATGCCCGAGCCC
775 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCC
* * * *
5491336 AGCACGTGCTGTCGCAACCCTCGGTCTGATCCGATCATAGACTGGGAAGGAACTCCGTATG
840 AGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * **
5491397 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* *
5491462 CGGCCAGAGGGGCGGGATGCACAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
*
5491527 TGCTACGACAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTACG-CAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * *
5491592 CCGACGAAACGAGCGGGTGGGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATG-AGCA
194 CCGACGAAACGAGCGGACGGGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCA-CA
* * * **
5491656 AGTCGTGGATCGATAGGGT-GTAGGTGGGTTTAGGAACATCTTCATATTTTTGTGTGCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
5491720 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
5491785 CGACTCGTTTTTTATTTTTTACGATTTTCAAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTT
388 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTT
* * *
5491850 TCGGAA-GAGGTTTGGCCCCAAACTTAGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAA
453 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
5491914 AAAATTCAGCTTAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAGAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* ** * *
5491979 CAGACACTTTAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAATGCCCTTTAAGGGGGTGTAA
583 CAGACACTTTAATGGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
5492044 GTTCTCGAGGTTTGATGGGGGATAGGGGGCCAATATAATGGCCACGTACCAGCACCCATC-CTAC
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC-AC
* *
5492108 ATCATGTGCGCACACACCTCGGCCCCCCCGATCGTCGGAA-CCCAATGCCG-C--T--GG---T-
712 ATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTC
* * * *
5492163 ---C-A------G--G-T--T-CTCCGGCGAAGAAAAATGTGGCACCAACACATGCCAGAGCCCA
776 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCA
* * * * **
5492212 GCATGTGCTGTCGCAACCCGCGGTCTGGTCCGATCTTAGATTTTGAATGAACTCCGTATG
841 GCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
5492272 GTTAGACTGGGAATGAACTCCGTATGCCCAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * * * * *
5492337 CGGCCAGAGGGGTGAGATGCGCAAGCCAGGGATTGG-CTGGGTCCCCCTCTATGTGCTGCTGATC
66 CGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGGTC-GGGTCCCCCTCTACGTGCTGCCGATC
* * *
5492401 CTACTACCGCAACCCTC-GATCCGGTCTGATCTTAGATTGGGAATGAACTCCATATGCCTAAGCC
129 CTGCTA-CGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
5492465 AACCAACAAAACAAGC-GAGCGGGC-GG-GGG-G-GCACTCCGCCGGCCAGAAAGACGGGATGTA
192 AACCGACGAAACGAGCGGA-CGGGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCA
*
5492525 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCATGCCAATG
256 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* **
5492590 CCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGTGTTCACGTGAAGTTTCATGGCAA
321 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
5492655 GATGACTCGTTTTCTA-TTTTCATGATTTTCGAAACTTTTTATGGTTCG-G--------GAATTT
386 GACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTATGGTTCGAGATTTTTTAAAATTT
* * * * * *
5492710 TTTCGGAAGGATTTTTTGCCCCAAACTTGGTAGACTTGATCCTTGCATTTTTTTTGGTATGCAC-
451 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * *
5492774 AAAAAATTCAACTAAAAACTTGAAGTGTACAAGGTTTTGTGACCATTTG-AAAAAGTGTCCCCAT
516 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
5492838 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
581 TTCAGACACTTTAATGGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
5492903 GAGTTCTTGAGGTTTGATGAGGGATAGGAGGCCAATATAACGGTCAAGTACCAGCACCCATCGCA
646 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
5492968 CATCATGTACGCACA--------CCCCCCGATCGTCGGAA-CCCAATGCCGCCGGTTAGTTTCTC
711 CATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTC
* * * * * * * * * *
5493024 CGGCGATGCTTCGATGATGGTGCCTCGGCAAAGAAAAATGTGTCACCAGCACATACCCGAGCGCA
776 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCA
* * * * *
5493089 GCATGTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATG
841 GCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
5493149 CTTAGACTCGGAATGAACTCCGTATGCCTAAGTTAACCCACAAAACAAGCGTGCGGGCGTGCTCA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GG-GTGCTCA
* * ** ** * * *
5493214 ACCGGCTAGAGGGGCGGGATGCGCAAGCTAGGGATCGGTTAGGTTTCGCTCTGCGTGCTGCCAAT
64 ACCGGCCAGAGGGGCGGGATGCGCAAGC-GGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGAT
* * * * *
5493279 CCTGCTGCCACAACCCTCAGTCTGGTC-GAATCTTAGACTAGGAATGAACTCCGTATGCCAAAGC
128 CCTGCT-ACGCAACCCTCAGTCCGGTCTG-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * * *
5493343 CAACCGACGAAACGAGC-GAGTGGGCAGGCGGGCAAGCGCTACACCGACCAGAGAGACGGGATGT
191 CAACCGACGAAACGAGCGGA-CGGGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGC
* * * * * *
5493407 GCAAGCTGTGAATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGTCAAT
255 ACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* *
5493472 GCCATTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCA
320 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
5493537 AGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGG-TCGAGATTTTTTAAAATT
385 AGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTATGGTTCGAGATTTTTTAAAATT
* *
5493601 TTTTCGGAAGGATTTTTGGCACCAAACTTGGT--A---GATCCTTGTATTTTTGTTGGCATGCAC
450 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
5493661 AAAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCAATTGAAAAAAGTGTCCCCA
515 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * *
5493726 TTTCAGACACTTTAGTGGCTGCTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGAGGGTG
580 TTTCAGACACTTTAATGGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * * *
5493791 TGAGTTTTCAAGGTTTGATGAGAGATAGGGGGCCAGTATAAGGGCCAAGTACCAGCA-CCATCAC
645 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * **
5493855 ACATCATGTGCGCACACCCCTCGACCCCCTCGATCACCGGAACCCCAATGCCGCCCG-TCAGGTT
710 ACATCATGTGCGCACACCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCG-CCGATCAGGTT
* ** * * *
5493919 CTCCGGCGATGCTCCGATGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCACATGCCCGAGT
773 CTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGC
* * *
5493984 CCAGCATGTGCTACCGTAACCCTCGGTCT-AGTCCGATCTTAGACTAGGAATGAACTCCGTATG
838 CCAGCATGTGCTGCCGCAACCCTCGGTCTGA-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
5494047 CTTAGACT-GGAATGAACTTCATATGCCTAAGTCAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
5494082 ACCTTTTTGT
Statistics
Matches: 5459, Mismatches: 668, Indels: 286
0.85 0.10 0.04
Matches are distributed among these distances:
852 27 0.00
853 1 0.00
855 1 0.00
857 1 0.00
860 1 0.00
861 147 0.03
862 58 0.01
863 46 0.01
864 1 0.00
865 1 0.00
870 1 0.00
871 75 0.01
872 116 0.02
873 4 0.00
874 6 0.00
875 273 0.05
876 4 0.00
877 135 0.02
878 264 0.05
879 135 0.02
880 67 0.01
881 128 0.02
882 15 0.00
883 188 0.03
884 27 0.00
885 2 0.00
886 2 0.00
887 126 0.02
888 138 0.03
889 125 0.02
890 1 0.00
891 7 0.00
892 491 0.09
893 340 0.06
894 241 0.04
895 2 0.00
896 6 0.00
897 38 0.01
898 136 0.02
899 124 0.02
900 435 0.08
901 389 0.07
902 303 0.06
903 81 0.01
904 185 0.03
905 552 0.10
906 13 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
CGGCCAGAGGGGCGGGATGCGCAAGCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCT
GCTACGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGAGCGGACGGGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCACAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGCG
ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATG
TGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:5493161 original size:26 final size:26
Alignment explanation
Indices: 5493123--5493175 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5493113 CCGGTCTGAT
*
5493123 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTCGGAATGAACTCCATATG
*
5493149 CTTAGACTCGGAATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCATATG
5493175 C
1 C
5493176 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCATATG
Found at i:5494071 original size:25 final size:26
Alignment explanation
Indices: 5494021--5494072 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
5494011 CTAGTCCGAT
*
5494021 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
5494047 CTTAGACT-GGAATGAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
5494072 C
1 C
5494073 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:5497216 original size:26 final size:26
Alignment explanation
Indices: 5497187--5497237 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
5497177 GGTCTGATTA
* *
5497187 TAGACGGGGAATGAACTCTGTATGCT
1 TAGACGAGGAATGAACTCCGTATGCT
*
5497213 TAGACTAGGAATGAACTCCGTATGC
1 TAGACGAGGAATGAACTCCGTATGC
5497238 ATAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACGAGGAATGAACTCCGTATGCT
Found at i:5500106 original size:26 final size:26
Alignment explanation
Indices: 5500055--5500107 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5500045 CTGATCCGAT
* *
5500055 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
5500081 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
5500107 C
1 C
5500108 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:5500974 original size:26 final size:26
Alignment explanation
Indices: 5500945--5500997 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5500935 CCGGTCTGAT
5500945 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5500971 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5500997 C
1 C
5500998 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5502744 original size:26 final size:26
Alignment explanation
Indices: 5502715--5502765 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
5502705 AGTCCGATCA
5502715 TAGATTCAAAATGAACTCCGTATGCT
1 TAGATTCAAAATGAACTCCGTATGCT
***
5502741 TAGATTGGGAATGAACTCCGTATGC
1 TAGATTCAAAATGAACTCCGTATGC
5502766 CTAAGTTAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
TAGATTCAAAATGAACTCCGTATGCT
Found at i:5503654 original size:26 final size:26
Alignment explanation
Indices: 5503618--5503670 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5503608 CTGGTCTGAT
5503618 CTTAGAATGGGAAAGAACTCCGTATG
1 CTTAGAATGGGAAAGAACTCCGTATG
* *
5503644 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAAAGAACTCCGTATG
5503670 C
1 C
5503671 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGAATGGGAAAGAACTCCGTATG
Found at i:5504096 original size:906 final size:899
Alignment explanation
Indices: 5500014--5508143 Score: 9609
Period size: 883 Copynumber: 9.1 Consensus size: 899
5500004 GATCCGGCCA
* * * * * * *
5500014 GAGCCTAGCATGTGCT-CCTGCAATCTTCGATCTGATCCGATCTTAGACTGGGAATGAACTTCGT
1 GAGCCCAGCATGTGCTGCC-GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGT
* * * *
5500078 ATGCTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTC
65 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * ** * *
5500143 AACCGGCCTGAGGGGAGGGATGCGCAAGTCGGGTATCGATTGGGTCCCCCTCTGCGAGCTGTCGA
130 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGG-ATCGGTCAGGTCCCCCTCTGCGTGCTGCCGA
* * * * * *
5500208 TCCTGCTGCCGCAACCCTCAGTCCGATCCGATCTTAGGCTGGGAATGAACTCCGTATGCCTAGGC
194 TCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
* * *
5500273 CAACCGACG--A-A-A--C--G-AGCGGGCGGGCACTACGCCGGCCAGAGAGATGGGATGCGAAA
259 CAACCGACGAAAGACAGGCGGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * **
5500329 GTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCTAGTGTGA
324 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
5500394 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
389 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
5500459 GACTCGTTTTCTATTTTTCATG-TTTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
454 GACTCGTTTTCTATTTTTCACGATTTTT-GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
*** * * *
5500523 TCAAAAGGAGTTTT--CACCCAAACTTGGCAGATGTGATCCTTGTATTTTTGTTGGCTTGCACAA
518 TTGGAAGGAGTTTTGGC-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
5500586 AAAATTTCAGCTAAAAACTCGAATTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATT
582 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
5500651 ACAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
647 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
5500716 AGTTTTCGAGGTTTGATGAGGGATAATGAGGGATACGAGACCAATAAAAGGGCCAAGTACCAACA
712 AGTTCTCGAGGTTTGATGAGGG---AT-AGGG----G-G-CCAATATAAGGGCCAAGTACCAGCA
* * * *
5500781 CCCATCGCACATCATGTGCGTACACCACCCCCAG-CCCCCCGATCGTCGGAACCCCAATGGCACC
767 CCCATCGCACATCATGTGCGCACA-CACCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCC
* * * * *
5500845 TGTCAGGTTCT----C--TG--AC---GATGGTGCCCCGATGAAGAAAAATACGGCACCAACACA
831 GGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTG-CCCGACGAAGAAAAATGCGGCACCAGCACA
5500899 TGCCC
895 TGCCC
* * * ** *
5500904 GAACCCAGCATGTGTTGCCACAACCCTTAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
1 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
* * *
5500969 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGTGGGTGCTCA
66 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
5501034 GCCGGCCAGA---G-GGGAT-CG---G-C----T--G--A-GTCCCCCTCTACGTGCTACTGATC
131 GCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGATCGGTCAGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * * * * *
5501081 TTACGGCTGCAACCCTCGATCCGGTCCGATCTTAGACGAGGAATGAACTTCGTATGCCTAAGACA
196 CTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
* * * *
5501146 ACCGATGAAATGACCAGGCGGGTGGACGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCA
261 ACCGACGAAA-GA-CAGGCGGGCGG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* **
5501211 AGCCGTGGATCGATAGGGTGGGAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCC
323 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
5501276 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
388 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
5501341 CGACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTACGGTTCGGGATGTTTTAAAATTTTT
453 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * *
5501406 TGGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCGTTGTGTTTTTGTTGGCATGCACAAA
518 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
5501471 AACATTCAGCTAAAAACTCGAAGTGTACGAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
583 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
5501536 CAGACACTTTAATGGCTACCGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTAA
648 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
5501601 GTTCTCGAGGTTTGATGCGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
713 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
5501666 TCATGTGCG--CACA-------CCCCCCCGATTGTCGGAACCCCAATGCTGCCGATTAGGATCTC
778 TCATGTGCGCACACACCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * * *
5501722 CGGTGATGCTCCGGCGATGGTGCCTCGACGAAGAAAAATGCGACACGAACACATGCCT
843 CGGCGATGCTCCGGTGATGGTGCC-CGACGAAGAAAAATGCGGCACCAGCACATGCCC
* * * * * * *
5501780 GAGCACAGCGTGTGCTACCGCAACCCTCGGTCTGGTCTGATCTTATACTAGGAATGAACTCCATC
1 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
* * * * * *
5501845 TGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAATCGAGCATGCGGGTGGTCA
66 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* ** * * * * *
5501910 GTCGGCCAGAGGGGTAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCAAT
131 GCCGGCCAGAGGGGCGGGATGCGCAAGCC-AGGATCGGTCAGGTCCCCCTCTGCGTGCTGCCGAT
* * * * *
5501975 CCTGTTGCCGCAACCCTCGGTCTGGTTTGATCTTAGTCTGGGAATGAACTCCGTATGCCTAAGCC
195 CCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
** * *
5502040 AACCGACGAAA-TTA-------GGC-GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAG
260 AACCGACGAAAGACAGGCGGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
5502096 CCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCAT
325 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
* *
5502161 TTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACC
390 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
*
5502226 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAACTTTTTTT
455 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTT
* *
5502291 GGAAGGAGTTTTGGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAA
520 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * *
5502356 AATTCAACCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTAA
585 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
5502421 GACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGT
650 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
5502486 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATC
715 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
5502551 ATGTGCGCACACCCCCCCGGCCCCCCTGATTGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
780 ATGTGCGCACACACCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* ** * * *
5502616 ACGATGCTCCGAAGATGGTGCCCCGATGAAGAAAAATGTGGCACCAACACATGCCC
845 GCGATGCTCCGGTGATGGTG-CCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
* * ** ** * * * ***
5502672 AAGCCCAGCATGTGCTACCGCAACCCTTAGTCCAGTCCGATCATAGATTCAAAATGAACTCCGTA
1 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
* *
5502737 TGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGC-GGCTGCTC
66 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-GCTC
* * * * ** *
5502801 AGCCAGCCAGAGGAGTGGGATGCACAAGCCAGGGATCGACCAGGTCCCCCTCTGTGTGCTGCCGA
130 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCA-GGATCGGTCAGGTCCCCCTCTGCGTGCTGCCGA
* * * **
5502866 TCCTACTGCCTCAACCCTTGACCCGGTCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGC
194 TCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
* *** * * * *
5502930 CAACCGACGAAACGAGCAGGTGGGCCGATAGGCGAGCACTACGCCAGCCAGAGAGATGGGATACG
259 CAACCGACGAAA-GA-CAGGCGGG-CGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* ** *
5502995 CAAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAAACACATCTTCATATTTCTACTTGCCAATG
321 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
* *
5503060 CCATTTTTATGGCTTGTAAATCCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
386 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
5503125 GATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGCTCGAGATTTTTTTAAATTT
451 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
* * * **
5503190 TTTTGGAAAGAGTTTTGGCCCCAAAATTGGTATACGTGATCCTTGTATTTTTGTTGGCGCGCACA
516 TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
5503255 AAAAAATTCAGCTAAAAAGTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
581 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
5503320 TTCAGACACTTTAATGGCTACTGGTAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
646 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
5503385 GAGTTCTCAAGATTTGATGAGGGATAGGGGGCCAATATAAGGG-CACAGTACCAGCACCCATCGC
711 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA-AGTACCAGCACCCATCGC
* * * * **
5503449 ACTTCATGTGTGCACACCACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGTCGTTGGTCAGG
775 ACATCATGTGCGCACA-CA-CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG
* * * *
5503514 TTCTCCGGTGATTCTTCGGTGATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGCCT
838 TTCTCCGGCGATGCTCCGGTGATGGTGCC-CGACGAAGAAAAATGCGGCACCAGCACATGCCC
* ** * * *
5503577 GACCCCAGCATGTGCTGTTGTAACCCTCGGTCTGGTCTGATCTTAGAATGGGAAAGAACTCCGTA
1 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
* * * * *
5503642 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAATGAGCTTACGGGCGCTCA
66 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
5503707 GCCGGCCAGAGGGGCGGGATACGCAAGCCGAGGATCAGTCAGGTCCCCCTCTGCGTGCTACCAAT
131 GCCGGCCAGAGGGGCGGGATGCGCAAGCC-AGGATCGGTCAGGTCCCCCTCTGCGTGCTGCCGAT
* * ** * *
5503772 CCTGTTGCCGTAAACCC-CGGTCCAATCCGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGC
195 CCTGCTGCCG-CAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
* * *
5503836 CGAA-CGACGAAATGAGCAGGCGGGCGGACGGGCGGGCACAACGTCGGCCAGAGAGACGGGATAC
259 C-AACCGACGAAA-GA-CAGGCGGGCGG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
5503900 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
320 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
* * *
5503965 GCCATTTTTATGGCTTGCAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCAAGGCA
385 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* *
5504030 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACATTTTACGGTTCAAGATTTTTTAAAATT
450 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATT
* * ** *
5504095 TTTTTGGAAGGAGCTTTGGCCCCAAACTTGGAAGACACGATCCTTGTATTTTAT-TTGGCTTGCA
515 TTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT-TGTTGGCATGCA
5504159 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
579 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * * *
5504224 ATTTCAGACATTTTAATAGCTACTGGCAGTAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGT
644 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
5504289 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCCAGTACCAGCACCCATCG
709 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* ** * *
5504354 CACATCATGTGCGCAAATGCCCCCGGCCCCCCCGATCGTCAGAACCCCAATGCCGCCAGTCAGGT
774 CACATCATGTGCGCACACACCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * * *
5504419 TCTCCGACGATGCTCCGGTGATGGTGCCCCAGCGAAGAAAAATGCGACACCAGCACATGCCT
839 TCTCCGGCGATGCTCCGGTGATGGTGCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCC
* ** *
5504481 GAGCCCAGCATGTGCTGCCACAACCCTCAATCTAGT-TCGATCTTAGACTGGGAATGAACTCCGT
1 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGT
* * * *
5504545 AAGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGGGCGTGCGAGCGCTC
65 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
** ** * * **
5504610 AATCGGCCAGAGGGGCCAGATGCGTAAGCCAGGGATCGGTCGGGTCCCCCTCTATGTGCTAG-CG
130 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCA-GGATCGGTCAGGTCCCCCTCTGCGTGCT-GCCG
* ** * * * *
5504674 ATCCTGCTGCCACAACCCTTAGTCTGGTTTGATCTTATACTGGGAATGAACTCCGTATGCCTAAG
193 ATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
* ** * *
5504739 CCAACTGACG-AA-AC-GAGC--G-AACGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGT
258 CCAACCGACGAAAGACAG-GCGGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
*
5504798 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
322 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
*
5504863 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAGGGCAAG
387 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
** * * * * *
5504928 ATAACTCGTTTTCTATTTTTTACGATTTTTGAGA--TTTT----TT-AAAATTTTTTTAAATTTT
452 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * *
5504986 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACTTGATCCTTGAATTTTTGTTGGCATGCACAA
517 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
5505051 AAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
582 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* ** * * **
5505116 TTAGATGCTTTAATGGCTAGTGGCAGCAAACCTGCAAAATCTCAAAAACTCTTTAAGGGGGTGTG
647 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
5505181 AGTTCTCGAGGTTTAATGAGGGAT-GGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCAC
712 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
5505245 ATCATGTGCACACACCCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCTGTCAAGTTC
777 ATCATGTGCGCACACACCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
** * * * * * * * *
5505310 TTTGGCAATGCTCAGGCGATGGGGTCCCGGCAAAGAAAAATGTGGCACCAGCACGTGCCC
841 TCCGGCGATGCTCCGGTGATGGTG-CCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
* * * ** *
5505370 GAGCCCAGCATGTGCTGTCGTAACCCACGGTCCAGTCTGATCTTAGACTGAGAATGAACTCCGTA
1 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
* *
5505435 TGGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAACGAGCGTGCGGGCGCTCA
66 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
5505500 GTCGGCCAAAGGGGCGGGATGCGCAAACCAGGGATCGGTCAGGTCCCTCTCTGCATGCTACCGAT
131 GCCGGCCAGAGGGGCGGGATGCGCAAGCCA-GGATCGGTCAGGTCCCCCTCTGCGTGCTGCCGAT
* * * ** * * *
5505565 CCTACTGCTGCAACCCTCAGTCTAGTGTGATCTTAGACTAAGAATGAACTCTGTATGCCTAAGCC
195 CCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
* * * *
5505630 AACCGACGAAACGAGCGGGCAGGCAGGCGGGCGGGCACTACGTCGGTCAGAGAGACGGGATGCGC
260 AACCGACGAAA-GA-CAGGCGGGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * * * *
5505695 AAGTCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCGTCATATTTCTACGTGCTATTGC
322 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* * * *
5505760 CATTTTCATGGCTTGTAAATTCATACAATGTTCCCTTAAGCCTTCACATGAAATTTCATGGCAAG
387 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
*
5505825 ACGACTCGTTTTCTATTTTTCATGATTTTCT-AAACTTTTTACGGTTCGAGATTTTTTAAAATTT
452 ACGACTCGTTTTCTATTTTTCACGATTTT-TGAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
* * *
5505889 TTTCGGAA-GAGGTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACA
516 TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * * *
5505953 AAAAAATTCAGCTTAAAACTCAAAGTGTACAAGATTTTGTGACAATTTGAGAAAAGTGTCCCCAT
581 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
5506018 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGCAAAATCTCAAATGCCCTTTAAGGGGGTGT
646 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
5506083 AAGTTCTCGAGGTTTGATGGGGGATAGGGGGCCAATATAATGGCCACGTACCAGCACCCATC-CT
711 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC-
* *
5506147 ACATCATGTGCGCACACA-CCTCGG-CCCCCCGATCGTCGGAA-CCCAATGCCGCTGGTCAGG--
775 ACATCATGTGCGCACACACCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * *
5506207 -T-------T-CTCC---------G---G-CGAAGAAAAATGTGGCACCAACACATGCCA
840 CTCCGGCGATGCTCCGGTGATGGTGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
* * * * **
5506245 GAGCCCAGCATGTGCTGTCGCAACCCGCGGTCTGGTCCGATCTTAGATTTTG-ATGAACTCCGTA
1 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
* * *
5506309 TGGTTAGACTGGGAATGAACTCCGTATGCCCAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCA
66 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * ** *
5506374 GTCGGCCAGAGGGGTGAGATGCGCAAGCCAGGGATTGG-CTGGGTCCCCCTCTATGTGCTGCTGA
131 GCCGGCCAGAGGGGCGGGATGCGCAAGCCA-GGATCGGTC-AGGTCCCCCTCTGCGTGCTGCCGA
* * * * * *
5506438 TCCTACTACCGCAACCCTCGATCCGGTCTGATCTTAGATTGGGAATGAACTCCATATGCCTAAGC
194 TCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
* * * * * **
5506503 CAACCAAC-AAA-ACAAGCGAGCGGGCGGGGGGGCACT-CTGCCGGCCAGAAAGACGGGATGTAC
259 CAACCGACGAAAGACAGGCGGGC-GGCGGGCGGGCACTAC-GCCGGCCAGAGAGACGGGATGCGC
* *
5506565 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCATGCCAATGC
322 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* **
5506630 CATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTAAGTGTTCACGTGAAGTTTCATGGCAAG
387 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * *
5506695 ATGACTCGTTTTCTA-TTTTCATGATTTTCGAAACTTTTTATGGTTCG-G--------GAATTTT
452 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * * * * * *
5506750 TTCGGAAGGATTTTTTGCCCCAAACTTGGTAGACTTGATCCTTGCATTTTTTTTGGTATGCACAA
517 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
5506815 AAAAATTCAACTAAAAACTTGAAGTGTACAAGGTTTTGTGACCATTTGAAAAAAGTGTCCCCATT
582 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
5506880 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
647 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
5506945 AGTTCTTGAGGTTTGATGAGGGATAGGAGGCCAATATAACGGTCAAGTACCAGCACCCATCGCAC
712 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
5507010 ATCATGTACG--CACA-------CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTTAGTTTCT
777 ATCATGTGCGCACACACCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * * * *
5507066 CCGGCGATGCTTCGATGATGGTGCCTCGGCAAAGAAAAATGTGTCACCAGCACATACCC
842 CCGGCGATGCTCCGGTGATGGTGCC-CGACGAAGAAAAATGCGGCACCAGCACATGCCC
* * * * *
5507125 GAGCGCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTTGGAATGAACTCCATA
1 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
* * * *
5507190 TGCTTAGACTCGGAATGAACTCCGTATGCCTAAGTTAACCCACAAAACAAGCGTGCGGGCGTGCT
66 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC--GCT
* * ** * ** * *
5507255 CAACCGGCTAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTTAGGTTTCGCTCTGCGTGCTGCCA
129 CAGCCGGCCAGAGGGGCGGGATGCGCAAGC-CAGGATCGGTCAGGTCCCCCTCTGCGTGCTGCCG
* * * ** *
5507320 ATCCTGCTGCCACAACCCTCAGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCAAAG
193 ATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
* ** * * *
5507385 CCAACCGACGAAACGAGC-GAGTGGGCAGGCGGGCAAGCGCTACACCGACCAGAGAGACGGGATG
258 CCAACCGACGAAA-GA-CAG-GCGGGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* * * * *
5507449 TGCAAGCTGTGAATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTCTACATGTCA
319 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTACATGCCA
* *
5507514 ATGCCATTTTTAT-GCATGTAAATTCATACAATGGTCCCTTAAG-CTTCACGTGAAGTTTCAAGG
383 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* **
5507577 CAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGG-TCGAGGATTTTTT-AA
448 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAA
* *
5507640 ATTTTTTTCGGAAGGATTTTTGGCCACCAAACTT--T-G--GTAGATCATTGTATTTTTGTTTGG
512 ATTTTTTT-GGAAGGAGTTTTGGCC-CCAAACTTGGTAGACGT-GATCCTTGTATTTTTG-TTGG
* *
5507700 CATGCACAAAAAAATCTCAGCTAAAAAACTCGAAGCTGTATAAGATTTTTGTGACCAATTGAAAA
573 CATGCACAAAAAAAT-TCAGCT-AAAAACTCGAAG-TGTACAAGA-TTTTGTGACCATTTG-AAA
* * *
5507765 AAAGTGTCCCCCATTTCAAGACACTTTAGTGGCTGCTGCGGGCAGCAAAACCTATAAAAATCTCA
633 AAAGTGT-CCCCATTTC-AGACACTTTAATGGCTACT---GGCAGC-AAACCTGT-AAAATCTCA
* * * *
5507830 AATGCT-TTTGAAGAGGGTGTGAGTTCTTCAAGGTTTAGATGAGAAGATA-GGGGCCAGTATAAG
691 AATGCTCTTT-AAGGGGGTGTGAGTTC-TCGAGGTTT-GATGAG-GGATAGGGGGCCAATATAAG
* * * * **
5507893 GGCCAAGTACCAGCA-CCATCACACATCATGTGCGCACAC-CCCTCGACCCCCTCGATCACCGGA
752 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCGGCCCCCCCGATCGTCGGA
* * **
5507956 ACCCCAATGCCGCCCGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGGTG-AGAAAAAT
817 ACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTG-CCCGACGAAGAAAAAT
*
5508020 GCAGCACCAGCACATGCCC
881 GCGGCACCAGCACATGCCC
* * * * * *
5508039 GAGTCCAGCATGGTGCTACCGTAACCCTCGGTCTAGTCCGATCTTAGACTAGGAATGAACTCCGT
1 GAGCCCAGCAT-GTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGT
* *
5508104 ATGCTTAGACT-GGAATGAACTTCATATGCCTAAGTCAACC
65 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
5508144 TTTTTGTAGT
Statistics
Matches: 6226, Mismatches: 814, Indels: 376
0.84 0.11 0.05
Matches are distributed among these distances:
854 17 0.00
855 16 0.00
858 1 0.00
859 4 0.00
860 13 0.00
861 235 0.04
862 1 0.00
865 34 0.01
866 3 0.00
868 1 0.00
869 30 0.00
870 166 0.03
871 82 0.01
872 2 0.00
873 6 0.00
874 228 0.04
875 75 0.01
876 157 0.03
877 1 0.00
879 3 0.00
880 80 0.01
881 69 0.01
882 2 0.00
883 801 0.13
884 193 0.03
885 9 0.00
886 46 0.01
887 134 0.02
888 80 0.01
889 527 0.08
890 127 0.02
891 40 0.01
892 275 0.04
893 18 0.00
894 25 0.00
895 94 0.02
896 215 0.03
897 197 0.03
898 16 0.00
899 15 0.00
900 28 0.00
901 35 0.01
902 6 0.00
903 671 0.11
904 383 0.06
905 281 0.05
906 541 0.09
907 28 0.00
908 31 0.00
909 7 0.00
914 58 0.01
915 117 0.02
916 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
GCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGATCGGTCAGGTCCCCCTCTGCGTGCTGCCGATC
CTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
ACCGACGAAAGACAGGCGGGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACACCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
CGATGCTCCGGTGATGGTGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
Found at i:5504558 original size:26 final size:26
Alignment explanation
Indices: 5504522--5504571 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
5504512 CTAGTTCGAT
5504522 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
*
5504548 CTTAGATTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
5504572 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:5505450 original size:26 final size:26
Alignment explanation
Indices: 5505412--5505462 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5505402 CAGTCTGATC
5505412 TTAGACTGAGAATGAACTCCGTATGG
1 TTAGACTGAGAATGAACTCCGTATGG
*
5505438 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGAGAATGAACTCCGTATG
5505463 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGG
Found at i:5507204 original size:26 final size:26
Alignment explanation
Indices: 5507166--5507218 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5507156 CCGGTCTGAT
*
5507166 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACTCGGAATGAACTCCATATG
*
5507192 CTTAGACTCGGAATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCATATG
5507218 C
1 C
5507219 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCATATG
Found at i:5508131 original size:25 final size:26
Alignment explanation
Indices: 5508081--5508132 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
5508071 CTAGTCCGAT
*
5508081 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
5508107 CTTAGACT-GGAATGAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
5508132 C
1 C
5508133 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:5510507 original size:26 final size:26
Alignment explanation
Indices: 5510471--5510523 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5510461 GTTGACTTAG
5510471 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5510497 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5510523 G
1 G
5510524 ATCGGATTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5511408 original size:26 final size:26
Alignment explanation
Indices: 5511372--5511424 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5511362 GTTGACTTAG
*
5511372 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
5511398 GCATATGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
5511424 G
1 G
5511425 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:5511882 original size:26 final size:26
Alignment explanation
Indices: 5511846--5511898 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5511836 GTTGACTTAC
*
5511846 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5511872 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5511898 G
1 G
5511899 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5514493 original size:26 final size:26
Alignment explanation
Indices: 5514456--5514508 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5514446 GTTGACTTAG
* *
5514456 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5514482 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5514508 G
1 G
5514509 ATCGGATGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5515378 original size:26 final size:26
Alignment explanation
Indices: 5515342--5515394 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5515332 GTTGACTTAG
*
5515342 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5515368 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5515394 G
1 G
5515395 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5515802 original size:886 final size:890
Alignment explanation
Indices: 5513496--5520520 Score: 8307
Period size: 884 Copynumber: 7.9 Consensus size: 890
5513486 CCACTTTGGT
* * ** * * * * *
5513496 ATCCCGCCCTTCTGGCCGGCTAAGTGCTCGCACGCTGGTTTCGTGGGTTGACTTTGGCATTCGAA
1 ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * *
5513561 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAGGCTTG
66 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* * * * *
5513626 CGGCAGCACATCCTGGGCTCGGGCATGTGCTGGTGTC-GCATTTTTCTTCGTTGGGCCACCATCG
131 CGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCAGCATTTTTCTTCGTCGGGGCACCATCG
* * * * *
5513690 CCGGAGCATC-GTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
196 TCGGAGCATCACT-GGAGAACCTGAACGGCGACATTGGGGTTCCGACGATCGGGGGGGCC-GGGG
* * * * *
5513754 GGGTGTGCGCACATGATGTGCAAAGAGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTC
259 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
5513819 ATCAAACCTCAAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTA
324 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * * * *
5513884 GCCATTAAAGTGTCTTAAATGGGCACACTTTTTTCAAATGGTCACAAGATCTTGTAAACGTCGAG
389 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * *
5513949 TTTTTAGCTGAA-TTTTTTGTGCATGCCAAGAAAAATACAAGGATCATGTCTACCAGGTTTGGGG
454 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
*
5514013 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
519 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAA
* * * *
5514078 AATAGAAAACGAGTCGTCTTGCCATAAAACTTAACGTGAAGTCTTAAGCGACCATTGTATGAATT
584 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
** * *
5514143 TACAAGCCATAAAAATGGCATTGGCACGTACAAATATGAAGATGTGTCTAAACCCACCTACCACC
649 TACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* ** *
5514208 CTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCAACGTAGTGCCCGCCCACCCGTCCGCC
714 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCCGCCCGCC
* * *
5514273 CGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCG
775 CACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCG
* * * *
5514338 AGGGTTGTAGTAGCAGGATTGGCAGCACGCAGAGGGGGACCC-AGTTGATCCTCGACTTGGGC
840 A-GG--GT--TAGC------GGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGC
* * * *
5514400 ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCTCGCACATTTTGTGGGTTGACTTAGGCATACGGA
1 ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * ***
5514465 GTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATGGGACCGAGGGTTG
66 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* * * * *
5514530 CGGTAGCAAATGCTGGGCTCGGGTATGTGCTGGTGCC-GCATTTTTCTTCGCCGGGGCACCATCG
131 CGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCAGCATTTTTCTTCGTCGGGGCACCATCG
* * * * *
5514594 TCAGAGCATCACCGGAGAACCT-AACCGACGACATTGGGGTTCCGGCGAT-GGGGGGGCC-AGGG
196 TCGGAGCATCACTGGAGAACCTGAA-CGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
*
5514656 GGTGTGCGCACATGAGGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
260 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
5514721 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAATAG
325 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
5514786 CCATTAAAGTCTCTGAAATGGGGACAATTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGT
390 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
5514851 TTTTAGCTGAATTGTTTTGTGCATGCCAACAAAATTACAAGGATCACGTCTACCAAGTTTGGGGC
455 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * * * *
5514916 CAAAACCCCTTCCGAAAAAATTTTCACACATCTCGAACCGTAAAATGTTTAAAAAATCTTGAAAA
520 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAA
* *
5514981 ATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTT
585 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
** *
5515046 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGACGTGCCTAAACCCACCTACCACCC
650 ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * * *
5515111 TATCAAACTACGGCTTGCGCATCCCGTCTCTCTGACTGACGTAGTGCCTGCCCGCCCGCCCACTC
715 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTC
* * *
5515176 GTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGT
780 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGT
* * * * *
5515241 T-GCGGCAGCAGGCAGAGGGGGACCCGACCGATCCCTGACTTGCAC
845 TAGCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
* *
5515286 ATCTCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGA
1 ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
*
5515351 GTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
66 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* * * * *
5515416 CGGCAGCACATGCTGGGCTCGGGCACGTGTTGGTG-CAGCATTTATGTTCGTCGAGCCACCATCG
131 CGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCAGCATTTTTCTTCGTCGGGGCACCATCG
* * **
5515480 TCGGAGCATCGCTGGAGAACCTGAACGGCGACATTAGGGTTCCGGTGATCGGGGGGGCCGGGGGG
196 TCGGAGCATCACTGGAGAACCTGAACGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG
** * * *
5515545 GTGTAAGCACATGATGTGTGATGGGTACTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCAT
261 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
5515610 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTCGC
326 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
5515675 CATTAAAGTGTCT-AGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGT
391 CATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
5515739 TTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATA-AAGGATCACGTCTACCAAGTTTGGGGC
455 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
*
5515802 CAAAACTCCTTCTGAAAAAATTTTAAAAAATC-CTGAACCGTAAAAAGTTTCAAAAATCATGAAA
520 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAA
* *
5515866 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCACTGTATGAATT
584 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * *
5515931 TACATGCCATAAAAATGGCATTGGTACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
649 TACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * *
5515996 CTATCGATCCACGGCTTGCCCATCCCGTCTCCCTAGCCGGCATAGTGCTCGCCTGCCCGCCCGCC
714 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCGCC
* * * * * *
5516061 CGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACTGGATCG
775 CACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCG
* *
5516126 AGGGTTGCCACATCAAGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGGTTTGCGC
840 AGGG-T------T--AG--CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
* * ** * * *
5516188 ATCCCGGCCCTTTGGTTGGTTGAGCACCCGCA---T-G---C------TCA-TT--TCAT--GG-
1 ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
*
5516234 GTTGA----C--T-TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
66 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* * * * *
5516292 TGGCAGCACATGCTGGGCTCGGGAATGTGTTGGTGCCA-TATTTTTCTTCATCGGGGCACTATCG
131 CGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCAGCATTTTTCTTCGTCGGGGCACCATCG
* * * * * * *
5516356 CCGGAGCATCACCGAAGAACCTGATCGACGGA-ATTGGGGTTCCGACGATCGGGGGGGTCGGAGG
196 TCGGAGCATCACTGGAGAACCTGAACGGC-GACATTGGGGTTCCGACGATCGGGGGGGCCGGGGG
* *
5516420 GGTGTGCGCACATTATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCA
260 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
5516485 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTGGCTGTCAGTAG
325 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
5516550 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
390 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
5516615 TATTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACCGCCTACCAAGTTTGGGG
455 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA-CGTCTACCAAGTTTGGGG
* * * *
5516680 CCAAAACTTCTTCTCGAAAAAATTTTAAAAAATCCGCGAATCGTAAAAAATTTTCAAAAATCAAT
519 CCAAAACTCCTTC-CGAAAAAATTTTAAAAAAT-CTCGAACCGT-AAAAAGTTTCAAAAATC-AT
* * * *
5516745 GAAAACTAGAAAATGAGTCCGTCTTGCCATTG--ATTTCCACGTGAAGGCTTAAAGAGACCATTG
580 GAAAAATAGAAAACGAGT-CGTCTTGCCA-TGAAACTT-CACGTGAAGGCTT-AAGGGACCATTG
* *
5516808 TATG-ATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCTAC
641 TATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAC
* * * *
5516872 CTACAACTCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGAAGT---C-CCTGCC
706 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * * * * * *
5516933 CACCCACTCATTTCGTTGGTTGGCTTAGGCATATGTAGTTCATTCCCAGTCTAAGATCTGATTC-
771 CGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCG
* * * * * *
5516997 GATTGAGGGTTGCAGCAGTAGGATTG-ATAGCATGTAGAAAGGGACCCGATCGATCCTCAGCTTG
835 GATCGAGGGTT--AGC-G--GCA--GCA-CGCA-G-AG--GGGGACCCGATCGATCCCCGGCTTG
5517061 CGC
888 CGC
* * * * * *
5517064 ATCCTGGCCCTCTGGCCGACTGAGCACCCGCTCGCTCATCTCGTGGGTTGACTTAGGCATACGGA
1 ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * * *
5517129 GTTCATACCCAGTCTAAGCATACGAAGTTCTTTCCCAGTCTAAGATCGGATCGGACCGAGGGTTG
66 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* * * *
5517194 CGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTGTC-GCATTTTTCTTTGTCGGGGTACCATCG
131 CGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCAGCATTTTTCTTCGTCGGGGCACCATCG
* * *
5517258 TCGGAGCATCGTCGGAGCATCGTTGGAGAACCTGATCGACGGCATTGGGGTTCCGACGATCGGGG
196 TCGGAGCA---T-----CA-C--TGGAGAACCTGAACGGCGACATTGGGGTTCCGACGATCGGGG
*
5517323 GGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
250 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
5517388 CTATCCCTCATCAAACCTTGAGAGCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
315 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
5517453 CTGTCAGTAGCCAATAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
380 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* *
5517518 CACTTCTAGCCATTAAATTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCA
445 CACTTC--G-------AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* *
5517583 CGTCTATCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
501 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAA
* * *
5517648 GTTTTAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
566 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * *
5517713 GGGACCATTGTATGAATTTACATGCCATAAAAATGGCATTGGCACGCAGAAATTTGAAGATGTGC
631 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGC
* * * ** *
5517778 CCAAACCCACCTACCACCCTATTGATCCA---C--G-GCACCCCGTCTCTCTGGCCGGTATAGTA
696 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* * * ** *
5517837 CCTG---G-TCACCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCATTCTAAG
761 CCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
5517898 ATCGGACCGGACCGAGGGTTGCAGCAGTAAGATCACCCACACGTAGAGGGGGACCCGATCGATCC
826 ATCAGACCGGATCGAGGGTT--AGC-G---G--CA---GCACGCAGAGGGGGACCCGATCGATCC
5517963 CCGGCTTGCGC
880 CCGGCTTGCGC
* ** * * *
5517974 ATCCCGACATTCTGGCCGGCTGAGCACCTGCACACTCGTTTTGTGGGTTGACTTAGGCATACGGA
1 ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * *
5518039 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGGCTAAGATCGAACCAGACCCAAGGTTG
66 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* * *
5518104 CGGCAGCACATGCT-GG-ACAGGCATGTGTTGGTGCCA-AATTTTTCTTCG-CTGGGGCACCATC
131 CGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCAGCATTTTTCTTCGTC-GGGGCACCATC
* * ** * * * * *
5518165 GTCGGGGCATC-GTCAAAGAACATG-ACTAGCGGCACTGGGGTTCC-AGCGAT-TGGGGGGCCGG
195 GTCGGAGCATCACT-GGAGAACCTGAAC-GGCGACATTGGGGTTCCGA-CGATCGGGGGGGCCGG
*
5518226 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCC
257 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
5518291 TCATCAAACTTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAG
322 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
5518356 TAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
387 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
5518421 AGTTTTTAGCTGAAGTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
452 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * **
5518486 GGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATATCGAACCGCAAAAAGTTTTGAAAATCATGA
517 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGA
*
5518551 AAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
582 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
** * * *
5518616 TTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCCAAACACACCTCCCA
647 TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * *
5518681 CCCTATCGATCCACGGCTCGCAGCATCCTGCTCTCTCTGGCCGGCGTA-TGCCCGCCCACCCGCC
712 CCCTATCGATCCACGGCTTGC-GCATCCCG-TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
* * * *
5518745 C-CTTCGCTCATTTCGGTCAGTTGGCTTTAAGGCGTACGGGCAGTTCATTCCCAGTATAAGATCG
775 CAC-TCG----TTTC-GTCGGTTGGC-TT-AGGCATAC-GG-AGTTCATTCCCAGTCTAAGATCA
* * *
5518809 GATCGGATGGAGGGTTGCGGTAGTAGGATCGGCAGCACGTAGAGGGGGACCC-AGTCGATCCCCG
830 GACCGGATCGA-----G-GGT--TA-G--CGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCG
5518873 GCTTGCGC
883 GCTTGCGC
* * * * * *
5518881 ATCCCGCCCCTCTGGCTGACTGAGCACCCACATGCTTGTTTCGTGGGCTGACTTAGGCATACGGA
1 ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* *
5518946 GTTCATTCCCAGTCTAAG-AT-C-G-G---------A--C-----T--G----GACTGAGGGTTA
66 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* * * * *
5518985 CGACAGCACATGCTGGGCTCGAGCATGTGTTGGTG-CTGTATTTTTCTTCG-CTGGGTCACCATC
131 CGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCAGCATTTTTCTTCGTC-GGGGCACCATC
* * * * * * * * *
5519048 GCCAGAGCATCACCGAAGAACCT-AACCGCTGGCATTGGGGTTCCGACAATCGGGTGGGCCGAGG
195 GTCGGAGCATCACTGGAGAACCTGAACGGC-GACATTGGGGTTCCGACGATCGGGGGGGCCGGGG
**
5519112 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTGCTATCCCTC
259 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
5519177 TTCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTA
324 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
5519242 GCCATTAAAGTGTCTGAAATGGGGACA-TTTTTCTCAAATGGTCACAAAATCATGTACACTTTGA
389 GCCATTAAAGTGTCTGAAATGGGGACACTTTTT-TCAAATGGTCACAAAATCTTGTACACTTCGA
* * * * * *
5519306 GTTTTTAGCTGAATATTTTTGTGTATGCCAACAAAAATAAAAGGATCATGTCTGCCAAGTTTGGA
453 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * ** * **
5519371 GCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTTGAACCACAAAAAGTTTGAAAAATTGTGAA
518 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAA
*
5519436 AAATA-AAAAGCGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTCAAGGGACCATTGTATGAA
583 AAATAGAAAA-CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
*
5519500 TTTACAAGACATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA
647 TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
5519565 CCCTATCGATCCACGACTTGCGCATCACGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCA
712 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCA
* * * * * *
5519630 CTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTGCTAGTCTAAGATCAGACCAGACCGAG
777 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAG
* * * * *
5519695 GGTTGTGGCAGCAGGATTGGTAGCACGTAGAGGGGGACCCGGTTGATCCCCGGCTTGCAC
842 GG-T-T---AGC------GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
* * * * *
5519755 ATCCTGCCCTTCTGGCCGACTGAGCGCCCTG-ACACTCGTTTCGTGGGTTGACTTAGG-ATACAA
1 ATCCCGCCCCTCTGGCCGGCTGAGCACCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATAC--
* *
5519818 GATAGTTCATTCCCCAGTCTAAGGCATTACAGAGTTTCATTTCCCAGTCTAAGATCGGACCAGAC
63 G-GAGTTCATT-CCCAGTCTAA-GCA-TACGGAG-TTCA-TTCCCAGTCTAAGATCGGACCAGAC
* * * *
5519883 CAAGGGTTTGCGGCAGCACATGCTTGGGCTCGAGCATGTGCTT-ATGCC-GCA-TTTTC-TC-CC
122 CGAGGG-TTGCGGCAGCACATGC-TGGGCTCGGGCATGTG-TTGGTGCCAGCATTTTTCTTCGTC
* *
5519943 GGGGC-CCATCGTCGTGAG-A--ACTTG-G-ACC-G-ACGTC-A-ATTGGGGTTCCGACGACTCG
184 GGGGCACCATCGTCG-GAGCATCACTGGAGAACCTGAACGGCGACATTGGGGTTCCGACGA-TCG
* *
5519998 GGGGGGCCGGGGGGGTGTGCGCACAGGATGTGCTATGGGTGCTGGTACTTGGCCCTTATATTGGC
247 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
5520063 CCCCTATCCCTCATCAAATCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
312 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
5520128 TTGCTACCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTT
377 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
*
5520193 GTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
442 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * * * * * *
5520258 CCAAATTTGGGCCCAAAACCCCTTCCGAAAAAATTTAAAAAAAAACCCGAACCGCAAAAAGTTTA
507 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT-TAAAAAATCTCGAACCGTAAAAAGTTTC
* * * *
5520323 AAAAATCATGAAAAATAGAGAACGAGTCATCTTGCCATAAAACTTCACGTGAAGGCCTAAGGGAC
571 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
5520388 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAA
636 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAA
* *
5520453 CCCACCTACCACCCTATCGATCCACGACGTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
701 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
5520518 CCG
766 CCG
5520521 GCTGAGCACC
Statistics
Matches: 5290, Mismatches: 610, Indels: 447
0.83 0.10 0.07
Matches are distributed among these distances:
867 1 0.00
868 6 0.00
869 5 0.00
870 3 0.00
871 2 0.00
872 4 0.00
873 5 0.00
874 112 0.02
875 4 0.00
876 469 0.09
877 43 0.01
878 18 0.00
879 36 0.01
880 19 0.00
881 29 0.01
882 39 0.01
883 130 0.02
884 566 0.11
885 18 0.00
886 486 0.09
887 291 0.06
888 195 0.04
889 5 0.00
890 74 0.01
891 1 0.00
892 7 0.00
893 1 0.00
894 15 0.00
895 22 0.00
896 198 0.04
897 44 0.01
898 344 0.07
899 212 0.04
900 8 0.00
901 196 0.04
902 445 0.08
903 23 0.00
904 206 0.04
905 18 0.00
906 12 0.00
907 146 0.03
908 62 0.01
909 23 0.00
910 248 0.05
911 5 0.00
912 5 0.00
913 236 0.04
914 3 0.00
915 21 0.00
916 93 0.02
917 21 0.00
918 14 0.00
919 8 0.00
920 19 0.00
921 28 0.01
922 46 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
CGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCAGCATTTTTCTTCGTCGGGGCACCATCG
TCGGAGCATCACTGGAGAACCTGAACGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG
GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCG
TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTT
AGCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
Found at i:5517157 original size:26 final size:26
Alignment explanation
Indices: 5517120--5517172 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5517110 GTTGACTTAG
*
5517120 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
* *
5517146 GCATACGAAGTTCTTTCCCAGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
5517172 G
1 G
5517173 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATACCCAGTCTAA
Found at i:5517269 original size:11 final size:11
Alignment explanation
Indices: 5517253--5517285 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
5517243 GTCGGGGTAC
5517253 CATCGTCGGAG
1 CATCGTCGGAG
5517264 CATCGTCGGAG
1 CATCGTCGGAG
*
5517275 CATCGTTGGAG
1 CATCGTCGGAG
5517286 AACCTGATCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.24, G:0.36, T:0.21
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:5518066 original size:26 final size:26
Alignment explanation
Indices: 5518030--5518082 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5518020 GTTGACTTAG
*
5518030 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGGCTAA
5518056 GCATACGGAGTTCATTCCCAGGCTAA
1 GCATACGGAGTTCATTCCCAGGCTAA
5518082 G
1 G
5518083 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGGCTAA
Found at i:5520595 original size:26 final size:26
Alignment explanation
Indices: 5520559--5520611 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5520549 GTTGACTTAG
*
5520559 GCATACAGAGTTAATTCTCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
* *
5520585 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
5520611 G
1 G
5520612 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:5521471 original size:26 final size:26
Alignment explanation
Indices: 5521442--5521494 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5521432 GTTAACTTAG
*
5521442 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTCCATTCCCAGTCTAA
* *
5521468 GCATACGGAGTCCTTTCCCAGTCTAA
1 GCATACGAAGTCCATTCCCAGTCTAA
5521494 G
1 G
5521495 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTCCATTCCCAGTCTAA
Found at i:5522372 original size:26 final size:26
Alignment explanation
Indices: 5522342--5522394 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5522332 GTTGACTTAG
5522342 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5522368 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5522394 G
1 G
5522395 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5522855 original size:903 final size:900
Alignment explanation
Indices: 5520522--5523122 Score: 3674
Period size: 903 Copynumber: 2.9 Consensus size: 900
5520512 GCCCGCCCGG
* * *
5520522 CTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTAATTCTCAGTCTAAGC
1 CTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
*** **
5520587 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGACAATTGTGGCAGCACATGCTGGGCT
66 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCT
* * * * * *
5520652 CGGGCATGCG-TTAGTG-T-CGTATTTTTTTAGTCGGAGCACCATCGCCGAAGCATCACCGGAGA
131 CGGGCATGTGCTT-GTGCTGCATA-TTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * *
5520714 ACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGAGGGTGTGT-GCACATGATGT
194 ACCTGGCCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGAGGGTGTGTCGCACATGATGT
*
5520777 GCGATGGGTGCTGGTA------C-----TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
259 GTGATGGGTGCTGGTACTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
5520831 ACGCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCCGTAGCCATTAAAGTGTCTAAAAT
324 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5520896 GGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATGTTTTTG
389 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * *
5520961 TGCATGCCAACAAAAATACAAGGATCACGTA-TACCAAGTTTGGGGCCAAAACTCCTTCCCAGAA
454 TGCATGCCAACAAAAATACAAGGATCACG-ACTACCAAGTTTGGGGTGAAAAATCCTT-CCAAAA
* * * * * *
5521025 AAATTTTAAAAAAACCCGAACCGTAAAAAATTTCTAAAATTATGAAAAATAGAAAACGAGTCGTC
517 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC
* *
5521090 TTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGG
582 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGG
* * *
5521155 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATGCACGGCTTG
647 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
5521220 CGCACCCCGTCTCTCTGGTCGGCGTA--G--TGCCTGCCCGCCCACTCGTTTCTTCGGTTGCCTT
712 CGCATCCCGTCTCTCTGGCCGACGTAGCGCCCGCCTGCCCGCCCACTCGTTTCATCGGTTGGCTT
* * *
5521281 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGTGGCAGCAGGATCAG
777 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGACAGCAAGATCAG
* * * * * *
5521346 CAGCACGTAGAGGGGGACTCGGTCGATCCCCAGCTTGTGCATCCTACCCCTCTGGCCGG
842 CAGCACGTAGAGGGGGACCCGCTCGATCCCCAGCTTATGCATCCCACCCCTCTAGCCGA
* * * *
5521405 CTGAGCACCCGTACGCTCGTTTCTTGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCTAAGC
1 CTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * *
5521470 ATACGGAGTCCTTTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATGCTGGGCT
66 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCT
* * * * * *
5521535 CGGCCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACCGGAGAAC
131 CGGGCATGTGCTTGTGCTGCATATTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAAC
* * * *
5521600 CTGAG-CTACGGCATTGGGGTTCCGACGATCGGTGGGGTCGGGTGGGTGTG-CGCACATGATGTG
196 CTG-GCCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGAGGGTGTGTCGCACATGATGTG
5521663 TGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
260 TGATGGGTGCTGGTAC-TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
5521728 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
324 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
5521793 GCGGACACTTTTTTCAAATTGTCACAAAACCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
389 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
5521858 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGTGAAAAATCCTTCCCAAAAT
454 TGCATGCCAACAAAAATACAAGGATCACGACTACCAAGTTTGGGGTGAAAAATCCTTCCAAAAAA
* * *
5521923 ATTTTAAAAAATCCCAGACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCATCTT
519 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
* **
5521988 GCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTACAAATTTACAAGACATAAAAATGGCA
584 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCA
*
5522053 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
649 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * *
5522118 CATCCCGTCTCTCAAGCCGACGTAGCGCCCGCCTGCCCGCCTACTCGTTTCGTCGGTTGGCTTAG
714 CATCCCGTCTCTCTGGCCGACGTAGCGCCCGCCTGCCCGCCCACTCGTTTCATCGGTTGGCTTAG
* ***
5522183 GCATACGGAGTTCATTGCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGACAGCAAGATC-GAC
779 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGACAGCAAGATCAG-C
* * *
5522247 AGCAC-TCAGGGGGGGACCCGACT-GATCCCC-GACTTATGCATCCCGCTCCTCTAGCCGA
843 AGCACGT-AGAGGGGGACCCG-CTCGATCCCCAG-CTTATGCATCCCACCCCTCTAGCCGA
* *
5522305 CTGAGCGCCCGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
1 CTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * *
5522370 ATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCT
66 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCT
* ** *
5522435 CGGGCATGTGCTTGTGCTGCATATTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGAAGAAC
131 CGGGCATGTGCTTGTGCTGCATATTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAAC
** * *
5522500 CTGGCCGACGAAATTAGGGTTCCGACGATCGGGGGGGCCGGGAGGTGTGTGTTCGCGCATGATGT
196 CTGGCCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGAGG-GTGTG-TCGCACATGATGT
5522565 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
259 GTGATGGGTGCTGGTAC-TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
5522630 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
323 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
5522695 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
388 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
5522760 ATGCATGCCAACAAAAATACAAGGATCATGACTACCTAGTCTGGGGTGAAAAAACCTTCCAAAAA
453 GTGCATGCCAACAAAAATACAAGGATCACGACTACCAAGTTTGGGGTGAAAAATCCTTCCAAAAA
*
5522825 AATTTTAAAAAATCTCAAACCGCT-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC
518 AATTTTAAAAAATCCCAAACCG-TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC
* ** *
5522889 TTGCCATGAAACTTCACGTGAAGACTTAAGGGAATATTGTATGAATTTACAAGTCATAAAAATGG
582 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGG
* *
5522954 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
647 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
5523019 CGCATCCCGTCTCTTTGGCTGACGTAGTGCCGGCCCGCCTGCCCGCCCGCTCGTTTCATCGGTTG
712 CGCATCCCGTCTCTCTGGCCGACGTA--G-C-GCCCGCCTGCCCGCCCACTCGTTTCATCGGTTG
**
5523084 GCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGA
773 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
5523123 TCGGATCGAG
Statistics
Matches: 1512, Mismatches: 170, Indels: 48
0.87 0.10 0.03
Matches are distributed among these distances:
883 125 0.08
884 70 0.05
885 36 0.02
892 1 0.00
896 201 0.13
897 206 0.14
898 1 0.00
899 4 0.00
900 338 0.22
901 6 0.00
903 455 0.30
904 1 0.00
905 1 0.00
906 1 0.00
907 66 0.04
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (900 bp):
CTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCT
CGGGCATGTGCTTGTGCTGCATATTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAAC
CTGGCCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGAGGGTGTGTCGCACATGATGTGT
GATGGGTGCTGGTACTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGACTACCAAGTTTGGGGTGAAAAATCCTTCCAAAAAAAT
TTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATT
GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGCGCCCGCCTGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGACAGCAAGATCAGCAGC
ACGTAGAGGGGGACCCGCTCGATCCCCAGCTTATGCATCCCACCCCTCTAGCCGA
Found at i:5523798 original size:720 final size:722
Alignment explanation
Indices: 5522376--5523863 Score: 2236
Period size: 720 Copynumber: 2.1 Consensus size: 722
5522366 AAGCATATGG
* **
5522376 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCACATGCTAGGCTCGGGCA
* * *
5522441 TGTGCTTGTGCTGCATATTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGAAGAACCTGGCC
66 TGTGCTGGTGCTACATATTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGAAGAACCTGACC
* * * * * *
5522506 GACGAAATTAGGGTTCCGACGATCGGGGGGGCCGGGAGGTGTGTGTTCGCGCATGATGTGTGATG
131 GACGAAATTAGGGTTCCGACGATCGGGAGCGCCGGGAGGGGGGTGTTCGCACATGATGTGCGATG
*
5522571 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
196 GGTGCTGGTACTTGGCCCTTATATTGCCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
5522636 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
261 CTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGA
* *
5522701 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAT
326 CACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAACTTTTTTATGCAT
* * * ** *
5522766 GCCAACAAAAATACAAGGATCATGACTACCTAGTCTGGGGTGAAAAAACCTTCCAAAAAAATTTT
391 GCCAAAAAAAATACAAGGATCACGACTACCAAGTCTGGGGCCAAAAAACCTTCCAAAAAAATTTA
*
5522831 AAAAAATCTCAAACCGCTAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
456 AAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
* * **
5522896 GAAACTTCACGTGAAGACTTAAGGGAATATTGTATGAATTTACAAGTCATAAAAATGGCATTGGC
521 GAAACTTCACGTGAAGACTTAAGGGAACAATGTATGAATTTACAAGGAATAAAAATGGCATTGGC
* * *
5522961 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCC
586 ACACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * **
5523026 CGTCTCTTTGGCTGACGTAGTGCCGGCCCGCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGG
651 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCGCTAATTTCATCGGTTGGCTTAGG
5523091 CATACAA
716 CATACAA
* * * * *
5523098 AGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCACATGCTAGGCTCGGGCA
* *
5523163 TGTGCTGGTG-TCACATTTTTCTTTGTCGGGGCACCATCACCGGAGCATCGTC-AGAGAACCTGA
66 TGTGCTGGTGCT-ACATATTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGA-AGAACCTGA
* *** * * *
5523226 CCGGCGGCGTT-GGGATTCCGGCGATCGGGAGCGCCGGGGGGGGGGTG-TGGCACATGATGTGCG
129 CCGACGAAATTAGGG-TTCCGACGATCGGGAGCGCCGGGAGGGGGGTGTTCGCACATGATGTGCG
* *
5523289 ATGGGTGCTGGTACTTGGCCCTTATATTGCCCCCCTATCCCTCATCAAGCTTCGAGAACTCACAC
193 ATGGGTGCTGGTACTTGGCCCTTATATTGCCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
5523354 CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAG
258 CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAG
* *
5523419 GGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTTGAGTTTTTAGCTGAACTTTTTTGTG
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAACTTTTTTATG
* * ** *
5523484 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAAAAT
388 CATGCCAAAAAAAATACAAGGATCACGACTACCAAGTCTGGGGCCAAAAAACCTTCCAAAAAAAT
** * *
5523548 TTAAAAAAATCTCGGACCGCAAAAAGTTTCAAAAATCGTTAAAAATAGAAAACGAGTCATCTTGC
453 TTAAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGC
* *
5523613 CATGAAACTTGACGTGAAGGCTTAA-GGAACCAATGTATGAATTTACAAGGAATAAAAATGGCAT
518 CATGAAACTTCACGTGAAGACTTAAGGGAA-CAATGTATGAATTTACAAGGAATAAAAATGGCAT
*
5523677 TGGCACACAGAAATATGAGGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-CTG
582 TGGCACACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC-G
*
5523741 CATCCCGTCTCTCTGGCCGACGTAGTGCCCTCCCG-CTCGCCCGCCCGCTAATTTCATCGGTTGG
646 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCT-GCCCGCCCGCTAATTTCATCGGTTGG
*
5523805 CTTAGGCATACAG
710 CTTAGGCATACAA
*
5523818 AGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGTGGCAG
1 AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAG
5523864 TAGGATCGGC
Statistics
Matches: 686, Mismatches: 74, Indels: 14
0.89 0.10 0.02
Matches are distributed among these distances:
719 7 0.01
720 284 0.41
721 251 0.37
722 144 0.21
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (722 bp):
AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCACATGCTAGGCTCGGGCA
TGTGCTGGTGCTACATATTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGAAGAACCTGACC
GACGAAATTAGGGTTCCGACGATCGGGAGCGCCGGGAGGGGGGTGTTCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGCCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAACTTTTTTATGCAT
GCCAAAAAAAATACAAGGATCACGACTACCAAGTCTGGGGCCAAAAAACCTTCCAAAAAAATTTA
AAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
GAAACTTCACGTGAAGACTTAAGGGAACAATGTATGAATTTACAAGGAATAAAAATGGCATTGGC
ACACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCGCTAATTTCATCGGTTGGCTTAGG
CATACAA
Found at i:5523999 original size:26 final size:26
Alignment explanation
Indices: 5523969--5524021 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
5523959 GTTGACATAG
5523969 GCATACAG-AGTTCATTCCCAGTCTAA
1 GCATAC-GCAGTTCATTCCCAGTCTAA
5523995 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
5524021 G
1 G
5524022 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:5524860 original size:907 final size:900
Alignment explanation
Indices: 5523098--5525317 Score: 3125
Period size: 907 Copynumber: 2.5 Consensus size: 900
5523088 AGGCATACAA
* * *
5523098 AGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATC-GACCAGATCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCA
* * *
5523163 TGTGCTGGTGTCACATTTTTCTTTGTCGGGGCACCATCACCGGAGCATCGTCAGAGAACCTGACC
65 TGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCGTC--CGGAGAACCTGACC
* * * * * * *
5523228 GGCGGCGTTGGGATTCCGGCGATCGGGAGCGCCGGGGGGGGGGTGTG-GCACATGATGTGCGATG
128 GACGGCATTGGGGTT-CGACGATCGGG-GGGCC-GAGGGGGGGTGTGCGCACATGATGTGCGATA
* * *
5523292 GGTGCTGGTACTTGGCCCTTATATTGCCCCCCTATCCCTCATCAAGCTTCGAGAACTCACACCCC
190 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
5523357 CTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGA
255 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
5523422 CACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTTGAGTTTTTAGCTGAACTTTTTTGTGCAT
320 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
5523487 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAATTTAA
385 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTCGGCGCCAAAACTCCTTCCGAAAAATTTAA
* ** *
5523552 AAAAATCTCGGACCGCAAAAAGTTTCAAAAATCGTTAAAAATAGAAAACGAGTCATCTTGCCATG
450 AAAAATCTCGAACCAAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATG
* * *
5523617 AAACTTGACGTGAAGGCTTAAGGAACCAATGTATGAATTTACAAGGAATAAAAATGGCATTGGCA
515 AAACTTCACGTGAAGGCTTAAGGAACCAATGTAAGAATTTACAAGCAATAAAAATGGCATTGGCA
* *
5523682 CACAGAAATATGAGGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCTGCATCCC
580 CACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGAACCACGGCTTCTGCATCCC
* *
5523747 GTCTCTCTGGCCGACGTAGTGCCCTCCCGCTCGCCCGCCCGCTAATTTCATCGGTTGGCTTAGGC
645 GTCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGCCCGCCCGCTAATTTCATCGGTTGCCTTAGGC
* * * ** *
5523812 ATACAGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGTGGCAGTAGGATCGGCAGC
710 AAACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCAGCAGTAGGATCGACAGC
* ** *
5523877 ACATAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCAGCCCCCTGGCCGGCTGAGCGCCG
775 ACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCAGCCCCCTGGCCGGCTGAGCGCCC
5523942 GCACCCTCGTTTCATGGGTTGACATAGGCATAC-AGAGTTCATTCCCAGTCTAAGCATACGC
840 GCACCCTCGTTTCATGGGTTGACATAGGCATACGA-AGTTCATTCCCAGTCTAAGCATACGC
5524003 AGTTCATTCCCAGTCTAAGATCGGACCAGA-CTGAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
1 AGTTCATTCCCAGTCTAAGATC-GACCAGATC-GAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
* * *
5524067 ATGTGCTAGTGTCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCGTCACCGGAGAACATGAC
64 ATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCGT--CCGGAGAACCTGAC
* *
5524132 CGACGGCATTGGGGTTCTGATGATCGGGGGAGCCGAGGGGGGGTGTGCGCACATGATGTGCGATT
127 CGACGGCATTGGGGTTC-GACGATCGGGGG-GCCGAGGGGGGGTGTGCGCACATGATGTGCGATA
* * * * **
5524197 GGTGCTGGTACTTGGCCCTTCTGTTGGCCCCATATCCCTCATCAAACCTCAAGAACTCACTTCCC
190 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
5524262 CTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGA
255 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
5524327 CTCTTTTTTCAAATGGTCACAAGAA-CTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTTTTAC
320 CACTTTTTTCAAATGGTCACAA-AATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGC
* * * *
5524391 ATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTCGGCGCCAAAACTCGTTCTGAAAAAATT
383 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTCGGCGCCAAAACTCCTTCCG-AAAAATT
* * *
5524456 TTAAAAAATC-CTGAACCAAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGC
447 TAAAAAAATCTC-GAACCAAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGC
* * *
5524520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAAATGGCATT
511 CATGAAACTTCACGTGAAGGCTTAAGGAACCAATGTAAGAATTTACAAGCAATAAAAATGGCATT
** *
5524585 GGCATGCAGAAATATGAAGA-AGTGCCTAAACCCACCTACCACCCTATCGAACCAGGGCTTGC-G
576 GGCACACAGAAATATGAAGATA-TGCCTAAACCCACCTACCACCCTATCGAACCACGGCTT-CTG
** *
5524648 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC-CTGCCCGCCCGCTCGTTTCGTCGGTTGC
639 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTC-GCCCGCCCGCTAATTTCATCGGTTGC
* * *
5524712 CTTATGCAAACAGAGTTCTTTCCCAGTCTAAGATTGGACCAGATCAAGGGTTGCAGCAGTAGGAT
703 CTTAGGCAAACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCAGCAGTAGGAT
* *
5524777 CGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC-GCCCCTCTGGCCGGCT
768 CGACAGCACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCAGCCCC-CTGGCCGGCT
* * * *
5524841 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCGCAGTCTAAGCAT
832 GAGCGCCCGCACCCTCGTTTCATGGGTTGACATAGGCATACGAAGTTCATTCCCAGTCTAAGCAT
*
5524906 ACGG
897 ACGC
* * * *
5524910 AGTTCATTCACC-GTCTAAGATCAATCCAGATCGAGGGTTGTGGGAGAACATGCTGGGCTCGGGT
1 AGTTCATTC-CCAGTCTAAGATCGA-CCAGATCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
* * * *
5524974 ATGTGCTGGAGACACATTTTTCTTCGTCGGGGCACCAT--------CGT-CGGAGCACCTGATCG
64 ATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCGTCCGGAGAACCTGACCG
* * *
5525030 ACGGCATTGGGGTTCAAGCGATCGGAGGGGTC-AGGGGGGGGTGTGCGCATATGATGTGC-ATAG
129 ACGGCATTGGGGTTCGA-CGATCGG-GGGGCCGA-GGGGGGGTGTGCGCACATGATGTGCGATAG
*
5525093 AGTACTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
191 -GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
5525157 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
255 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
5525222 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCAT
320 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
*
5525287 GCCAAGAAAAATACAAGGATCACGTCTACCA
385 GCCAAAAAAAATACAAGGATCACGTCTACCA
5525318 TTGAATCAAT
Statistics
Matches: 1172, Mismatches: 120, Indels: 57
0.87 0.09 0.04
Matches are distributed among these distances:
894 42 0.04
895 149 0.13
896 80 0.07
897 3 0.00
899 3 0.00
904 15 0.01
905 315 0.27
906 70 0.06
907 490 0.42
908 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (900 bp):
AGTTCATTCCCAGTCTAAGATCGACCAGATCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCAT
GTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCGTCCGGAGAACCTGACCGAC
GGCATTGGGGTTCGACGATCGGGGGGCCGAGGGGGGGTGTGCGCACATGATGTGCGATAGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
AAAAATACAAGGATCACGTCTACCAAGTTCGGCGCCAAAACTCCTTCCGAAAAATTTAAAAAAAT
CTCGAACCAAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGAACCAATGTAAGAATTTACAAGCAATAAAAATGGCATTGGCACACAGA
AATATGAAGATATGCCTAAACCCACCTACCACCCTATCGAACCACGGCTTCTGCATCCCGTCTCT
CTGGCCGACGTAGTGCCCGCCCGCTCGCCCGCCCGCTAATTTCATCGGTTGCCTTAGGCAAACAG
AGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCAGCAGTAGGATCGACAGCACACAG
AGGGGGACCCGACCGATCCCCGACTTGCGCATCCCAGCCCCCTGGCCGGCTGAGCGCCCGCACCC
TCGTTTCATGGGTTGACATAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGC
Found at i:5524913 original size:26 final size:26
Alignment explanation
Indices: 5524876--5524928 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5524866 GTTGACTTAG
*
5524876 GCATACGAAGTTCATTCGCAGTCTAA
1 GCATACGAAGTTCATTCACAGTCTAA
* *
5524902 GCATACGGAGTTCATTCACCGTCTAA
1 GCATACGAAGTTCATTCACAGTCTAA
5524928 G
1 G
5524929 ATCAATCCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCACAGTCTAA
Found at i:5525667 original size:26 final size:26
Alignment explanation
Indices: 5525637--5525689 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5525627 GTTGACTTAG
*
5525637 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
** *
5525663 GCATATGGAGTTCGTTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
5525689 G
1 G
5525690 ATCCGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:5526022 original size:768 final size:764
Alignment explanation
Indices: 5524559--5526085 Score: 2015
Period size: 768 Copynumber: 2.0 Consensus size: 764
5524549 CCATTGTAAG
5524559 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAAGTGCCTAAACCCACCTAC
1 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAAGTGCCTAAACCCACCTAC
* * *
5524624 CACCCTATCGAACCAGGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCC
66 CACCCTATCGAACCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCGACTGCC
* ** * *
5524689 CGCCCGCTCGTTTCGTCGGTTGCCTTATGCAAACAGAGTTCTTTCCCAGTCTAAGATTGGACCAG
130 CGCCCACTAATTTCGTCGGTTGCCTTATGCAAACAGAGTTCATTCCCAGTCTAAGATCGGACCAG
* * * *
5524754 ATCAAGGGTTGCAGCAGTAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
195 ATCAAGGGTTACAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCA
* * *
5524819 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA
260 CATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGA
* * * * *
5524884 AGTTCATTCGCAGTCTAAGCATACGGAGTTCATTCACCGTCTAAGATCAATCCAGATCGAGGGTT
325 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACCGCCTAAGATCAATCCAGACCAAAGGTT
** *
5524949 GTGGGAGAACATGCTGGGCTCGGGTATGTGCTGGAGACACATTTTTCTTCGTCGGGGCACCATCG
390 GCAGGAGAACATGCTGGGCTCGGGTATGTGCAGGAGACACATTTTTCTTCGTCGGGGCACCATCG
* * * *
5525014 TCGGAGCACCTGATCGACGGCATTGGGGTTCAAGCGATCGGAGGGGTCAGGGGGGGGTGTGCGCA
455 TCGGAGCACCTGATAGACGGCATTGGGGTTCAAGCGATCGGAAGGGTCA-CGGGGGGTGTACGCA
*
5525079 TATGATGTGCATAGAGTACTGGTACTTGGCCCTTATATTGCCCCCTATCCCTCATCAAACCTCGA
519 CATGATGTGCATAGAGTACTGGTACTTGGCCCTTATATTGCCCCCTATCCCTCATCAAACCTCGA
* * *
5525144 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
584 GAACTAAAACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTG
* *
5525209 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAA
649 TCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
*
5525274 TTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCATTGAATC
714 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATTGAATC
* *
5525325 AATTTACACA-CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAGCTA
1 AATTTACA-AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAAGTGCCTAAACCCACCTA
* * * * *
5525389 CCACCCTATCGATCCACGGCTTACGCATCCCGTCTTTCTGGTCGGCTTAGTGCCCG-C-AC-GCC
65 CCACCCTATCGAACCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGACTGCC
* * * * * *
5525451 CGCCCACTAATTTCGTTGGTTGGCTTA-GACATACGGAGTTCATTCCCAGTTTAAGATCGGACCG
130 CGCCCACTAATTTCGTCGGTTGCCTTATG-CAAACAGAGTTCATTCCCAGTCTAAGATCGGACCA
* * ** * * *
5525515 GA-CGTAGGGTTACGGCAGCAGGATCGGTAGCACGTAGAGTGGGACCC-ATCGATCCCCGACTTG
194 GATC-AAGGGTTACAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTG
* * *
5525578 CATATCCCGCCCCTCTGGCCGATTGAGCACCTGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
258 CACATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
* * * **
5525643 -AGAGTTCATTCCCAGTCTAAGCATATGGAGTTCGTTC-CCAGCCTAAGATCCGA-CTGGACCAA
323 GA-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACC-GCCTAAGAT-CAATCCAGACCAA
* * * * *
5525705 AGGTTGCAGTAGCACATGCTGGGCTCGGG-ATGTGCAGGTA-TCGCATTTTTCTTCGTTGGGGCA
385 AGGTTGCAGGAGAACATGCTGGGCTCGGGTATGTGCAGG-AGACACATTTTTCTTCGTCGGGGCA
* **
5525768 CCATCGTCGAGGCATCGTCGGAGAACCTGATAGGCGGCATTGGGGTTCCGGCGATC-GAAGGG-C
449 CCATCGTC--GG-A--G-C-----ACCTGATAGACGGCATTGGGGTTCAAGCGATCGGAAGGGTC
* * * *
5525831 -CGGGGGGTGTACGCACATGATGTGCGAT-GGGTGCTGGTATTTGGCCCTTATATTGGCCCTCTA
503 ACGGGGGGTGTACGCACATGATGTGC-ATAGAGTACTGGTACTTGGCCCTTATATT-GCCCCCTA
* *
5525894 TCCCTCATTAAACCTCGAGAACTAAAACCCCCTTAAAGAGCATTTGAGATTTTATAAGTTTGCTG
566 TCCCTCATCAAACCTCGAGAACTAAAACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTG
* *
5525959 CCAGTAGCCATTAAAGTTTCTGAATTAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
631 CCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
5526024 TTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATGCAAGGATTACGTCTACCA
696 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
5526086 AGTTTTGGGC
Statistics
Matches: 660, Mismatches: 81, Indels: 38
0.85 0.10 0.05
Matches are distributed among these distances:
760 39 0.06
761 144 0.22
762 95 0.14
763 2 0.00
764 1 0.00
765 1 0.00
766 110 0.17
767 46 0.07
768 188 0.28
769 1 0.00
770 5 0.01
771 28 0.04
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.26
Consensus pattern (764 bp):
AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAAGTGCCTAAACCCACCTAC
CACCCTATCGAACCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGACTGCCC
GCCCACTAATTTCGTCGGTTGCCTTATGCAAACAGAGTTCATTCCCAGTCTAAGATCGGACCAGA
TCAAGGGTTACAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCAC
ATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAA
GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACCGCCTAAGATCAATCCAGACCAAAGGTTG
CAGGAGAACATGCTGGGCTCGGGTATGTGCAGGAGACACATTTTTCTTCGTCGGGGCACCATCGT
CGGAGCACCTGATAGACGGCATTGGGGTTCAAGCGATCGGAAGGGTCACGGGGGGTGTACGCACA
TGATGTGCATAGAGTACTGGTACTTGGCCCTTATATTGCCCCCTATCCCTCATCAAACCTCGAGA
ACTAAAACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATTGAATC
Found at i:5526567 original size:26 final size:26
Alignment explanation
Indices: 5526537--5526589 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5526527 GTTAACTTAG
* *
5526537 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
* *
5526563 GCATATGGAGCTGATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
5526589 G
1 G
5526590 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:5528254 original size:867 final size:870
Alignment explanation
Indices: 5526606--5529930 Score: 4502
Period size: 867 Copynumber: 3.8 Consensus size: 870
5526596 CCAGAGCGAA
* * * *
5526606 GGTTACGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGGCTCATTTTTCTTCGTCGGGGCACC
1 GGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACC
* * * * *
5526671 ATCGCCGAAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCAGGGGGGCCGGCGGGGTGTGCG
66 ATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCG
5526736 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCT
131 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCT
*
5526801 TGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
196 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
5526866 GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
261 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT
* **
5526931 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAAAAAGTTTGGGGCCAAAACTC
326 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * *
5526996 TTTCTGAAAAAATTTAAAAAAATACCCGAACCGCAAAAAGTTTC-AAAAATCGTGAAAAATAGAA
391 CTTCCGAAAAAATTTTAAAAAAT-CCCGAACCGCAAAAAGTTTCGAAAAATCGTGAAAAATAGAA
* * * *
5527060 AATGAGTTGTCTTGCCATGAAACTTCATGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
455 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
5527125 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGA
520 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * * *
5527190 TCCATGGCTTGTGCATCCCGTCTCTCTGGCTGCCGCAGTGCCCGCCCGCCCGCCAGCCCGCTTGT
585 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACC-GCCCGCTCGT
* * * * *
5527255 TTTGTCGGTTGGCTTAGGGATATGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACTGAGGGTT
649 TTCGTAGGTCGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTT
* * *
5527319 GC-ACAACAGGATCGACAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC
713 GCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC
*
5527383 CTCTGGCCGACTGAGCACCCGCACGCACGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
778 CTCTGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
5527448 CAGTCTAAG-AT-CAGATCGGATCA-AG
843 CAGTCTAAGTATGCAGATCGGATCACAG
* * * *
5527473 GGTTATGGCAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCACCGGGGCACC
1 GGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACC
* * * *
5527538 ATCGTCGGATAACCTGACCGACGACATTGGGGTTCTGGCGAT-GGGGGGGTCGGGGGGGTGTGTG
66 ATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGG-CCGGGGGG-GTGTG
* * *
5527602 CGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTAGCCCCTTATACCTCATCAAAC
129 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAAC
* * *
5527667 CTTGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGTCAGTAGCCATTA
194 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
5527732 AAGTGTCTGAAATGGGGACACTTTTGTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAG
259 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAG
*
5527797 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA
324 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * *
5527862 TCCTTCCAAAAAAATTTTAAAAAATCTCAAACCGCAAAATA-TTTCGTAAAA-CGTGAAAAATAG
389 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAA-AGTTTCGAAAAATCGTGAAAAATAG
*
5527925 AAAACGAGTCGTCATGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
453 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*
5527990 GCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
518 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
5528055 GATCTACGGCTTGCGCATCGCGTCTCTCTGGCCGGCGCAGTGCCCGCCCGCCCACCAGCCCGCTC
583 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACC-GCCCGCTC
* * * * *
5528120 GTTTCGTAGGTCGGTTTAGGCTTATGGAGTTCATTCCCCGTCTAAGATCAGACCTGA-TCGAGGG
647 GTTTCGTAGGTCGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGG
* * * * * * *
5528184 TTGCGGCACCAGGAT-TAGTAGCACGCAAAGGGGGACCCGGTCGATCCTCGACTTGCGCATCCC-
711 TTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCG
* * * * *
5528247 ACCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTTGGTTGACTTTGGCATACGGAGTTCAT
775 CCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * * **
5528312 TCCCAGTCCAAG-AT-CGGACCGGA-CTGAG
840 TCCCAGTCTAAGTATGCAGATCGGATCACAG
* * * *
5528340 GGTTACGACAGCACATGCTGGGCTCGGGCAAGTGTTGGTGCCGCATTTTTCTTTATTGGGGCACC
1 GGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGG---C
* * * * * * *
5528405 ATCGCCGGTGCATCGTCGGAGAACCAGACCGGCGGTATT-GGGTTCCGACGATCGAGGGCGTCGG
63 A----C----CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGG
* * * *
5528469 GGGGATGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAGATTGGCCCCCTATCCC
120 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCC
*
5528534 TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
185 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
5528599 TAGCCATTAAAGTGTTTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTA
250 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
** *
5528663 AGTTTTTAGCTGAATTTTTTTGTGCATGGGAACAAAAATACAATGATCACGTCTACCAAGTTTGG
315 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* *
5528728 GGCCAAAACTCCTTCTGAAAAATTTTTAAAAAATCCCGAACCGCAAAAAGTTT-GATAAAATCGT
380 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGA-AAAATCGT
* *
5528792 GAAAAATAGAAAATGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
444 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
**
5528857 AATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTAC
509 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
5528922 CACCCTACCGATCCACGGCTT-CTGCATCCCGTCTCTTTGGCCGACGTAGTGCCCGCCCG--C-C
574 CACCCTATCGATCCACGGCTTGC-GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCAC
*
5528983 CGTCCGCTCGTTTCGTAGGTTC-GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-CAGGACC
638 CGCCCGCTCGTTTCGTAGG-TCGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACC
* * * * **
5529046 AGACCGAGGGTTGTGGCAGCAGGATTGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTG
701 AGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTG
* * *
5529111 CGCATCCCGTCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGCGTTGACTTAGGCATAC
766 CGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
*
5529176 GGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTTTAAGATCGGACCACCCGAG
831 GGAGTTCATTCCCAGTCTAAG--TAT---G--------C------AGATCGGATCA--C-AG
* ** * * *
5529238 GGTTGCGGTGGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTTTTCGTCGGGGCACC
1 GGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACC
* * *
5529303 ATCGCCAGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATAGAGGGGGCCGG
66 AT---C---G--T---CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGG
* *
5529368 GGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTACTTGG-CCTTATATTGGCCCCCTATCCC
120 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCC
*
5529432 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACGGGTTTGCTGCCAG
185 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
5529497 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
250 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
*
5529562 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
315 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * *
5529627 GCCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGATCTGTAAAAAGTTTC-AAAAATCATG
380 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAAATCGTG
* * *
5529691 AAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTACGA
445 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
** * *
5529756 ATTTACAAGCCATAAAAATAACATTGGCACACAGAAATATGAAGATGTGCCTAAACTCACCTACC
510 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
5529821 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT---C-CCCG--C-CCG
575 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCG
* * *
5529879 TCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
640 CCCGCTCGTTTCGTAGGTCGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
5529931 AATTGGGCCG
Statistics
Matches: 2182, Mismatches: 205, Indels: 115
0.87 0.08 0.05
Matches are distributed among these distances:
866 8 0.00
867 498 0.23
868 327 0.15
870 2 0.00
871 2 0.00
872 110 0.05
873 76 0.03
874 4 0.00
875 152 0.07
876 318 0.15
877 17 0.01
878 29 0.01
887 3 0.00
888 1 0.00
890 1 0.00
891 1 0.00
893 2 0.00
894 62 0.03
895 5 0.00
898 353 0.16
899 211 0.10
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (870 bp):
GGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACC
ATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCG
CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT
GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
CTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAAATCGTGAAAAATAGAAA
ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCGCCCGCTCGTTT
CGTAGGTCGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCG
GCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTC
TGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
TCTAAGTATGCAGATCGGATCACAG
Found at i:5529206 original size:26 final size:26
Alignment explanation
Indices: 5529170--5529222 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5529160 GTTGACTTAG
5529170 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
5529196 GCATATGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5529222 G
1 G
5529223 ATCGGACCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5531566 original size:26 final size:26
Alignment explanation
Indices: 5531530--5531582 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5531520 GTTGGCTTGG
5531530 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5531556 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5531582 G
1 G
5531583 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5531726 original size:899 final size:899
Alignment explanation
Indices: 5529979--5534158 Score: 5221
Period size: 899 Copynumber: 4.7 Consensus size: 899
5529969 GTGCTGGTAC
* *
5529979 TTGGCCCCCTATCCCTCTTCAAACCTCGAGAACTCACACCCCCTTAAAGAGCGTTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * *
5530044 CAGGTTTGCTGCCAGTAGCAATTAAAGCGTCTGAAATGGGGACACTTTTTTCAAATGGACACAAA
66 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
5530109 ATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTTTTGCATGCCAACAAAAATACAAGGATAA
131 ATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
** * * * *
5530174 CGTCTACCAAGTTTGAAGCCAAAACTCCTTTCGAAAAATTTTTAAGAAATCCCGAACCGTAAAAA
195 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
*
5530239 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
260 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* **
5530304 GGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGC
325 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTGAGAAATATGAAGATGTGC
** *
5530369 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCATCTCTCTGGCCGGC-----G
390 CTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTG
5530429 CCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
455 CCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
** * * *
5530494 TAAGATCAGACCAGACCAAGGGTTGTGGCAGCCGGATCGGTAGCACGCAGAGGGGGACCCGACCG
520 TAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGG-CCCG-TCG
* * * *
5530559 AT-CCTCGACTTGTGCATCCCACCCCTCTGAGCCGGCTGAGC-GCCCGCACGCTCTTTTCGCGGG
583 ATCCCT-GACTTGCGCATCCCGCCCCTCT-AGCCGGCTGA-CAGCCCGCACGCTCGTTT--CGTG
* * * * *
5530622 TTGACATAGGCATACGGAGTTCATTCCCATTCTGAGGATACGGAGTTCATTCCCTGTCTAAGATC
643 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * **
5530687 AGACCTGACAGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCT
708 AGACCGGACCGAGGGTTACGGCAACACATACTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCT
** * * * * * *
5530752 TTGCCGCGGCTCCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGTATTGGTGTTCCGACGA
773 TCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCAACGA
* * *
5530817 TCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAGTTGGGCCTTATA
838 TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
5530879 TTGGCCCCTTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
5530944 CAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
66 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* **
5531009 ATCTTATACACTTCGTCTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
131 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* ** * * *
5531074 GTCTATCAAGTTTGGGGCCAAATTTCCTACCAAAAAAATTTTAAAAAATCCCGAACTGCAAAAAG
196 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
** * * *
5531139 TTTTGAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGAGAAGGCTTAAG
261 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
*
5531204 GGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACTGAGAAATATGAAGATGTGCC
326 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTGAGAAATATGAAGATGTGCC
*
5531269 TAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGTCGTAGTGC
391 TAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* * * * *
5531334 CCGCCCGCCCTTCGGCCCACTTGTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATT-CCAGTCT
456 CCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
** ** ** * *
5531398 AAGATTGGACCAGACTGAGGGTTAAGATAGCAGGA-CTGGCAGCACGTAGAGGGGGCCCAGCCGA
521 AAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATC-GGCAGCACGCAGAGGGGGCCC-GTCGA
* * * *
5531462 TCCCTGACTTGCGCATCCCGCCCCTCTAGTCGGGTGAAAGCCCGCACGCTCGTTTCGTGTTGGCT
584 TCCCTGACTTGCGCATCCCGCCCCTCTAGCCGGCTGACAGCCCGCACGCTCGTTTCGTGTTGACT
* *
5531527 TGGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCG
649 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * * * ** * *
5531592 GACTGAGGGTTACGGCAACACATACTTGGCTCGGGCTTGTCCCGACGTCGTATTTTTCTTCATCG
714 GACCGAGGGTTACGGCAACACATACTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCG
* * * * ** * *
5531657 GGGCACAATCGTCAGAGCATCACCAGAGAACCTGACCGGTGGCATTGGGGTGTGC-GCGATCGGG
779 GGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGT-TCCAACGATCGGG
*
5531721 GGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATA
843 GGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
5531779 TTGGCCCCTTATCCCTCATCAAATCTCGATAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * *
5531844 CAGGTTTGCTGCCAGTATCCATTAATGTGTCTAAAAAGGGGACACTTTTTTCAAATGGTCACAAA
66 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * *
5531909 ATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATACAGGGATCAC
131 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* ** * *
5531974 GTCTACCAAGTGTT-GGGCCAAAACTCCATCCAGGAAAATTTTTAAAAATCCCAAACCG-AAAAA
196 GTCTACCAAGT-TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
* * * *
5532037 GTTTCAAAAATCGTGAAAAATAGAAAAGGAGTTGTCTTGCCATAAAACTTCACATGAAGGCTTAA
260 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * *
5532102 GGGACCATTGTATGAATTTACAAGCCA-CAAAATGGTATTGGCA-AGCAGAAATATGAAGATGTG
325 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTG-AGAAATATGAAGATGTG
* * *
5532165 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCAGAAC-T-
389 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCC-G-GCGTA
* * * *
5532228 GTGCCTC-CCCGCCCGCCCGTCCGCTCGTTTCGTCAGTTGGTTTAGGCATACGGAGTTCATTCCC
452 GTGCC-CGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* ** ** * * *
5532292 AGTCTAAGATCAGACCGGACCAAGGAATGCGGCTGCAGGATCGGCAGCACGCAGAGGGGTACCCG
516 AGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGG-GCCC-
* * * * * * * *
5532357 GTCGATCCC-CAGCTTGTGGATCCCG-CCCTTTGGCCGACTGACCGCCTGCA----CG-TTCGT-
579 GTCGATCCCTGA-CTTGCGCATCCCGCCCCTCTAGCCGGCTGACAGCCCGCACGCTCGTTTCGTG
* *
5532414 TT--C----G--T--GG-GTTGA----C--T-TAGGCATACGGAGTTCATTCCCAGTCTAAGATC
643 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * *
5532461 AGATCGGACCGAGGGTTGCGACAGCACATGCAGGACTCGGGCATGTGCTGGTGCCGTATTTTTAT
708 AGACCGGACCGAGGGTTACGGCAACACATACTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCT
* * * * * ** *
5532526 TCACCGGGGCACCATCGCCGGAACATTGTCGGAGAACCTGATCGGTGGCATTGGTGTTCCAACGA
773 TCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCAACGA
* *
5532591 TCGGGCGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATA
838 TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
5532653 TTGGCCCCCTATACCTCATCAAACCTTC-AGAACTCACACCCCTTTAAAGAGCATTTGAGATTTT
1 TTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
5532717 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATAGTCACAA
65 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
*
5532782 AATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCA
130 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * * * * *
5532847 CGTCTACCAGGTTTTGGGCCAAAATTCCTTGCAAAAAAATTTTCAAAAATCTCGAATCGTAAAAA
195 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
* *
5532912 GTTTCAAAAATAGTGAAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
260 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
5532977 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT-AGAAATATGAAGATAG-
325 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC-TGAGAAATATGAAGAT-GT
* * ** * * ***
5533040 GCATAAACCCACCAACCACCCTATCGATCCACAACTT-CGCATACCGTCTTTCTATTCGGCGTAG
388 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAG
* * * *
5533104 TGCCCGCCCGCCTG-CCTGCCCGCTCGTTTCATCGGTTGGCTTAGGAATACAGAGTTCATTCCCA
453 TGCCCGCCCGCCCGTCC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * * *
5533168 GTCTAAGATCAAACCAG-GTCGAGAGTTGTGGCAACAAGATCAGCAGCATGCAGAGGGGGACCCG
517 GTCTAAGATCAGACCAGACT-GAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGG-CCCG
* * * * * *
5533232 ATCGATCCCTGGCTTGCGCATCTCGCCCCTTTGGCCAGCTGAGCA-CCCGCACGCTCGTTTTGTG
580 -TCGATCCCTGACTTGCGCATCCCGCCCCTCTAGCCGGCTGA-CAGCCCGCACGCTCGTTTCGT-
*
5533296 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGA
642 -GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * *
5533361 TCATACCAGACCGTGGGTTACGGCAACACATACTGGGCTCGAGCATGTGTTGGTGCCGTATTTTT
706 TCAGACCGGACCGAGGGTTACGGCAACACATACTGGGCTCGGGCATGTGCTGGTGCCGTATTTTT
** * * * *
5533426 CTTCGTCGGGGCATCATCGTCGGAGCATCGCTGAAGAACCTGACCGACGGCATTAGGGTTCCAAC
771 CTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCAAC
* **** *
5533491 GATCGGGGGGGTCGGGGGGTGTGCGCACATGATACATGATGGGTGCTGGTACTTGGCCCTTACA
836 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * * *
5533555 TTGGCCCCCTATCCCTCACCAAACCTCAATAACTCACACCCCCTTAAACAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * *
5533620 TAGGTTTGCTGCTAGTAGCCATAAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
66 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
5533685 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAT
131 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* *
5533750 GTCTACCAAGTTTGGGG-CAAAGCTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAG
196 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
* * * *
5533814 TTTTAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCCATGAAACTTCACGTGAATGCTTAA
261 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG-CCATGAAACTTCACGTGAAGGCTTAA
5533879 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAATATGAAGATGTG
325 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTG-AGAAATATGAAGATGTG
*
5533943 CCTAAACCCACCTACCACCCTATTGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGT
389 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGT
* * * *
5534008 ----GCCCGCCC-T---CTCGCTTGTTTCATCGGTTGGCTTAGGCATAC-GAGGTTCATTCCTAG
454 GCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA-GTTCATTCCCAG
* * * *
5534064 TCTAAGATCAGACCAGA-TCGAGGGTTGTGGCAGTAGGAAT-GGTAGCACGTAGAGAGGGACCCA
518 TCTAAGATCAGACCAGACT-GAGGGTTGTGGCAGCAGG-ATCGGCAGCACGCAGAG-GGGGCCC-
** *
5534127 GTCGAT-CCTCGGTTTACGCATCCCGCCCCTCT
579 GTCGATCCCT-GACTTGCGCATCCCGCCCCTCT
5534159 GACCGATTGA
Statistics
Matches: 2819, Mismatches: 384, Indels: 159
0.84 0.11 0.05
Matches are distributed among these distances:
873 3 0.00
874 278 0.10
875 365 0.13
876 81 0.03
877 2 0.00
878 1 0.00
880 2 0.00
881 4 0.00
882 4 0.00
883 2 0.00
884 2 0.00
885 1 0.00
886 1 0.00
887 1 0.00
890 1 0.00
891 1 0.00
892 1 0.00
893 2 0.00
894 12 0.00
895 113 0.04
896 6 0.00
897 1 0.00
898 137 0.05
899 591 0.21
900 447 0.16
901 104 0.04
902 526 0.19
903 76 0.03
904 54 0.02
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (899 bp):
TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
GTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTGAGAAATATGAAGATGTGCC
TAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGC
CCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
AAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGCCCGTCGATC
CCTGACTTGCGCATCCCGCCCCTCTAGCCGGCTGACAGCCCGCACGCTCGTTTCGTGTTGACTTA
GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
CCGAGGGTTACGGCAACACATACTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGG
GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGG
GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
Found at i:5533343 original size:26 final size:26
Alignment explanation
Indices: 5533307--5533359 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5533297 GTTGACTTAG
*
5533307 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5533333 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5533359 G
1 G
5533360 ATCATACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5537131 original size:884 final size:883
Alignment explanation
Indices: 5535399--5537894 Score: 3131
Period size: 884 Copynumber: 2.8 Consensus size: 883
5535389 TGAAATCGTG
* * * * *
5535399 AAAGTTTCCAAAATCGTCAAAAATAGAGAACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCT
1 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTCACGTGAAGGCT
*
5535464 TAA-AGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCA-AGCAGAAATATGAAGA
66 TAAGA-GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA-CAGAAATATGAAGA
* * ** * * * *
5535527 TGTGCCTAAGCCAACCTATGACCCTATTGATCCACGGCTTGTGCATCCCATCTCTCTGGCATGCG
129 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC-CGCG
* * *
5535592 TAGTGCCCGCCCGTCCGTCCATCCGTTCGTTTCGTCGATTGGCTTAGGCATACGAAGTTCATTCT
193 TAGTGCCCGCCCGTCCG--C--CCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCC
* * * * *
5535657 CAGTCTAAGATCAGACCGAACTAAGGGTTGCGGCAGCAGGATC-GACAGCACACAGAGGGGGACC
254 CAGTCTAAGATCAGACAGAACGAA-GGTT-TGGCAGTAGGATCGGA-AGCACGCAGAGGGGGACC
* * * * * *
5535721 CGGCCGATCCCCGGCTTGCTCATCCTGCCCATCTGGCTGGCTGA-CTG-CCGTACGCTCGTTTCG
316 CGGCCGATCCCTGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGC-GCCCGCACGCTCGTTTCG
* * * * *
5535784 TTGGTTGACTTAGGCATACGGAGTTCATTCCCAATGTAAGCAAACAGAGTTAATTCCCAGTCTAA
380 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
* * * * * * *
5535849 GATCAGACTAGATCGAGGATTGC-GGCAGCACATGTTAGACTCGAGCATGTGCTGGTGTCGCATT
445 GATCAGACCAGACCGAGGTTTGCTGG-TG--C-TG---GGCTCGGGCATGTGCTGGTGCCGCATT
* * * * *
5535913 TTTCTTCGTCGGGGCACCATCGCCCGAGCATCGC-CGA-ACCATCTGACTTGCAGCATTGGGGTT
503 TTTCTTC-T---GG--CCATCGTCGGAGCATCGCTAGAGA--ACCTGACTGGCAGCATTGGGGTT
* * * * *
5535976 CCGACGATCGGGGGGGCCGGGGGGCTCTGCGCACATGACGTGCGATGGGTGCTGGTACTTGACCC
560 CAGGCGATCGGGGGGGCC-GGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
5536041 TTATATTGGCCCCCTATCTCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
623 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * * * *
5536106 TTTTACAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTAAAATGGGGACATTTTTTTCAAATGGTC
688 TTTTACAGGTTTCCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGATC
* * * *
5536171 ACAAAATCTTATACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGT
753 ACAAAATCTTATACACTTCAAGTATTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATAAAAGG
*
5536236 ATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTA
818 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTA
5536301 A
883 A
** * * *
5536302 AAAGTTTTTAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGGAAGTTCACGTGAAGGCT
1 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTCACGTGAAGGCT
* *
5536367 TAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGTAATGGCACACAGAAATATGAAGATG
66 TAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG
*
5536432 TGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
131 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-CGTA
* *
5536497 GTGCCCGCCCGTCCGCCCGCTCGTTTCGTCGATTGGCTTAGCCATACGGAGTTCCTTCCCAGTCT
195 GTGCCCGCCCGTCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * *
5536562 AAGATCAGACAGGATCGAAGGTTATGGCAGTAGGATCGGTAGCACGCAGAGGGGGACCAGGCCAA
260 AAGATCAGACA-GAACGAAGGTT-TGGCAGTAGGATCGGAAGCACGCAGAGGGGGACCCGGCCGA
* *
5536627 TCCCTGGCTTGCACATCCCGCCCCTTTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGA
323 TCCCTGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* *
5536692 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAGTGTTCATTCCCAGTCTAAGATCAGAC
388 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
* *
5536757 CGGACCGAGGTTTGCTGGTGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTT-T-G-CATC
453 CAGACCGAGGTTTGCTGGTGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTGGCCATC
* * * * *
5536819 GTCGGAGCATGGCTAGAGAACCTGACCGGTAGCATTGGGGTTCGGGCTATCGGGGGGGCCGGGGA
518 GTCGGAGCATCGCTAGAGAACCTGACTGGCAGCATTGGGGTTCAGGCGATCGGGGGGGCCGGGG-
* * *
5536884 GTGTGCGCACATGGTGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCATATCCCTCAT
582 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
5536949 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTACCAGTAGC
647 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTACCAGTAGC
* * * *
5537014 CATTAAAGTGTCTGAAATGGTGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTA
712 CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTATACACTTCAAGTA
*
5537079 TTTAGCTGAATTTTTTTATGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCC
777 TTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCC
* *
5537144 AAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAA
842 AAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAA
* *
5537186 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGCTCACGTGAAGGGT
1 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTCACGTGAAGGCT
* * *
5537251 CAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACCCAGAAATATGAAGATG
66 TAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG
*
5537316 TGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTC-CTCTTGGCCGGCGT
131 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC-TGGCC-GCGT
* *
5537380 AGTGCCTGCCGCCC-ACCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
194 AGTG-C--CCGCCCGTCC-GCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCC
** * * *
5537444 AGT-TGAAGATTGGACCAGACCGAAGG-TT-GCAGTAGCAGCATCGGAAGCATGTAGAGGGGGAC
255 AGTCT-AAGATCAGA-CAGAACGAAGGTTTGGCAGTAG--G-ATCGGAAGCACGCAGAGGGGGAC
* * * * * *
5537506 CCGGTCGATCCCTGGCTTCCGCATCCCGCCCCTCTGGTCGGCTGAGGGCCCGCACGCTCGTTTCA
315 CCGGCCGATCCCTGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * * * * *
5537571 TGGGTTGGCTCAAGCGTACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
380 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
* * * * *
5537636 GATCGGACCAGACCGAGGGTTATGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTT
445 GATCAGACCAGACCGA-GGTT-TGCT-G---GTGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * *
5537701 TTCTTCGTCGGGGCACCATCGTCGGAGCATTG-TCGGAGAACCTGACTGACGGCATTGGGATTCA
504 TTCTTC-T---GG--CCATCGTCGGAGCATCGCT-AGAGAACCTGACTGGCAGCATTGGGGTTCA
* *
5537765 GGCGATC-GGGGGGCTAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTA
562 GGCGATCGGGGGGGC-CGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
*
5537829 TATTGGCCCCCTATCCCTCATCAAACCTCGTGAACTCACA-CCCCTTAAAGAGCATTTGAGATTT
626 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
5537893 TA
691 TA
5537895 GTTGAATTTT
Statistics
Matches: 1394, Mismatches: 160, Indels: 81
0.85 0.10 0.05
Matches are distributed among these distances:
883 3 0.00
884 465 0.33
885 52 0.04
886 7 0.01
887 214 0.15
888 7 0.01
889 3 0.00
890 1 0.00
892 1 0.00
893 35 0.03
894 29 0.02
895 1 0.00
897 2 0.00
898 1 0.00
899 123 0.09
900 126 0.09
901 90 0.06
902 49 0.04
903 183 0.13
904 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (883 bp):
AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTCACGTGAAGGCT
TAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG
TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGCGTAG
TGCCCGCCCGTCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
AGATCAGACAGAACGAAGGTTTGGCAGTAGGATCGGAAGCACGCAGAGGGGGACCCGGCCGATCC
CTGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
AGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAG
ACCGAGGTTTGCTGGTGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTGGCCATCGTC
GGAGCATCGCTAGAGAACCTGACTGGCAGCATTGGGGTTCAGGCGATCGGGGGGGCCGGGGGTGT
GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTACCAGTAGCCATT
AAAGTGTCTAAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTATACACTTCAAGTATTTA
GCTGAATTTTTTTATGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
CTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAA
Found at i:5537616 original size:26 final size:26
Alignment explanation
Indices: 5537582--5537636 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
5537572 GGGTTGGCTC
* *
5537582 AAGCGTACGGAGTTCATTCCTAGTCT
1 AAGCATACGGAGTTCATTCCCAGTCT
5537608 AAGCATACGGAGTTCATTCCCAGTCT
1 AAGCATACGGAGTTCATTCCCAGTCT
5537634 AAG
1 AAG
5537637 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
AAGCATACGGAGTTCATTCCCAGTCT
Found at i:5538728 original size:26 final size:26
Alignment explanation
Indices: 5538692--5538744 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5538682 GTTGACTTAG
5538692 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5538718 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5538744 G
1 G
5538745 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5539393 original size:26 final size:26
Alignment explanation
Indices: 5539341--5539393 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5539331 GTTGACTTAG
*
5539341 GCATACAGAGTTCATTCCCACTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
5539367 GCATACGGAGTTCATTCCCAATGTAA
1 GCATACAGAGTTCATTCCCAATCTAA
5539393 G
1 G
5539394 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:5542362 original size:661 final size:663
Alignment explanation
Indices: 5541099--5542431 Score: 1941
Period size: 661 Copynumber: 2.0 Consensus size: 663
5541089 CGGAGTTCAT
* * * * ***
5541099 TCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAG
1 TCCCAGTCTAACCATAAGAAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACAGCAG
* * * * * *
5541164 CACATGATGGGCTTAGGCATGTGCTGGTGTGACATTTTTCTTCGTCGGGACACCATCGTCAGAGC
66 CAAATGATAGGCTCAGGCATGTGCTGGTGCGACATTTTTCTTCGTCGGGACACAATCGCCAGAGC
* * * *
5541229 ATCATCAGAGAACCTGATCGATGGCATCAAGGTTCCGATGATCGGTAGGGTCGGGGGGGGTGTGC
131 ATCACCAGAGAACCTGATCGACGGCATCAAGGTTCCAATGATCGGGAGGGTC-GGGGGGGTGTGC
5541294 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
195 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
5541359 ATGAGAACTCACACCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
260 ATGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAA
* *
5541424 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTTAGC
325 AGTGTCTGAAATGGGGACACTTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * *
5541489 TGAATTATTTTGTGCATTCCAAAAAAAATACAAGGATCATGTCTTCAAAGTTTGGAGCCAAAACT
390 TGAATTATTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACAAAGTTTGGAGCCAAAAAT
* * * * * ** *
5541554 CCTTTCAAAAGAATTTTAAAAAATCCTGTACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAA
455 CCATCCAAAAGAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAAAAA
* * * *
5541619 ATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
520 AAGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCA
* * * * *
5541684 ATAAAAATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCTAT
585 AAAAAAATGGCATTGGCAAGCAAAAATATCAAGATGTCCCTAAACCCACCTATCACACTATCGAT
*
5541749 CCACGGCTTGCGCA
650 CCACGGCTTGCACA
*
5541763 TCCCAGTCTAACCATATAG-AGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTACAGCA
1 TCCCAGTCTAACCATA-AGAAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACAGCA
* *
5541827 GCAAATGCTAGGCTCAGGCATGTGCTGGTGCCG-CATTTTTCTTTGTCGGGGA-ACAATCGCCAG
65 GCAAATGATAGGCTCAGGCATGTGCTGGTG-CGACATTTTTCTTCGTC-GGGACACAATCGCCAG
* * *
5541890 AGCATCACCGGAGAACCTGATCCG-CGGCAT-TAGGATTCCAATGATCGGGGGGGTC-GGGGGGT
128 AGCATCACCAGAGAACCTGAT-CGACGGCATCAAGG-TTCCAATGATCGGGAGGGTCGGGGGGGT
*
5541952 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCCCTCATCA
191 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
5542017 AACC-TCGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACGGGTTTGCTACCAGTAGCC
256 AACCAT-GAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCC
*
5542081 ATTAAAGTGTCTGAAATGGGGACAC-TTTTTAAAATGGTCACAAAATCTTGTACACTTCGGGTTT
320 ATTAAAGTGTCTGAAATGGGGACACTTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * * * *
5542145 TTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCACGTTTGGGGCTA
385 TTAGCTGAATTATTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACAAAGTTTGGAGCCA
* *
5542210 AAAATCCATCCGAAAA-AATTTTAAAAAATCCCGAACTATAAAAAGTTTCAAAAATCGTGAAAAA
450 AAAATCCATCC-AAAAGAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAA
5542274 TAAAAAACAG-GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTT
514 TAAAAAA-AGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTT
* *
5542338 ACAAGCAAAAAAAATGGCATTGGCAAGCAGAAATATCAAGATGTCCCTAAACCCACCTATCACAT
578 ACAAGCAAAAAAAATGGCATTGGCAAGCAAAAATATCAAGATGTCCCTAAACCCACCTATCACAC
5542403 TATCGATCCACGGCTTGCACA
643 TATCGATCCACGGCTTGCACA
5542424 TCCC-GTCT
1 TCCCAGTCT
5542432 CTCTGGCCGG
Statistics
Matches: 598, Mismatches: 63, Indels: 20
0.88 0.09 0.03
Matches are distributed among these distances:
660 4 0.01
661 281 0.47
662 159 0.27
663 3 0.01
664 143 0.24
665 8 0.01
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (663 bp):
TCCCAGTCTAACCATAAGAAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACAGCAG
CAAATGATAGGCTCAGGCATGTGCTGGTGCGACATTTTTCTTCGTCGGGACACAATCGCCAGAGC
ATCACCAGAGAACCTGATCGACGGCATCAAGGTTCCAATGATCGGGAGGGTCGGGGGGGTGTGCG
CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCA
TGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTATTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACAAAGTTTGGAGCCAAAAATC
CATCCAAAAGAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAAAAAA
AGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCAA
AAAAAATGGCATTGGCAAGCAAAAATATCAAGATGTCCCTAAACCCACCTATCACACTATCGATC
CACGGCTTGCACA
Found at i:5542929 original size:654 final size:657
Alignment explanation
Indices: 5542024--5543333 Score: 1818
Period size: 654 Copynumber: 2.0 Consensus size: 657
5542014 TCAAACCTCG
* *
5542024 AGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACGGGTTTGCTACCAGTAGCCATTAAAGT
1 AGAACTCACACCCCATTAAACAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGT
* *
5542089 GTCTGAAATGGGGACACTTTTTAAAATGGTCACAAAATCTTGTACACTTCGGGTTTTTAGCTGAA
66 GCCTGAAATGGGGACACTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* *
5542154 TTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCACGTTTGGGGCTAAAAATCCAT
131 TTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCACGTTTGAGACTAAAAATCCAT
* **
5542219 CCGAAAAAATTTTAAAAAATCCCGAACTATAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACAG
196 CCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGAAAAAAATAAAAAA-AG
*
5542284 -GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCAAAA
260 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCAAAA
* *
5542348 AAAATGGCATTGGCA-AGCAGAAATATCAAGATGTCCCTAAACCCACCTATCACATTATCGATCC
325 AAAATGGCATTGGCACA-CAGAAATATCAAGATGTCCCTAAACCCACCTACCACACTATCGATCC
* * * *
5542412 ACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-G-C-CCACTCGTTTCG
389 AC-GCTTGCACATCCCATCTCTCTGGCCGGCATAGTCCCCGCCCGCCCGGCCACCACTCATTTCG
* * *
5542474 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGACT-GAGGGTTGC-G
453 TCGCTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-TGGAGGGTTGCGG
* * * *
5542537 TAGCAAGATCGACAGCACGCAAAGAGGGACCCGGCTGATCCCCGGCTTGTGTATCCCACCCCTCT
517 CAGCAAGATCGACAGCACGCAAAGAGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCT
* * * * * *
5542602 -GG-CCGCTGAGCGCCCGTACGCTC-GTTTTGTGGGTTGACTTTGGCATACGAAGTTCATTCCCC
582 GGGTCCGCTGACCACCCGCACGC-CAGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA
5542664 GATCTAAGCATCA
646 G-TCTAAGCATCA
*
5542677 AGAACTCACACCCCATTAAA-AGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
1 AGAACTCACACCCCATTAAACA-GCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAG
* *
5542741 TGCCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG
65 TGCCTGAAATGGGGACAC-TTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * *
5542806 AAGTT-TTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAGGTTTTGAGAC-AAAACT
129 AA-TTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCACG-TTTGAGACTAAAAAT
* * * * * *
5542869 CCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGAAAAAAATAGAAA
192 CCATCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGAAAAAAATAAAAA
* * * * *
5542934 ATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTGAGGGACCATTGTATGAGTTTACAAGCC
257 AAGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCA
* * * * *
5542999 ATAAAAATGGCATTGGCACACAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGAT
322 AAAAAAATGGCATTGGCACACAGAAATATCAAGATGTCCCTAAACCCACCTACCACACTATCGAT
* *
5543064 CCACGCTTGCGCATCCCATCTCTCTGGCCGGCATAGTCCCCGCCCGCCCGGCCGACCGCTCATTT
387 CCACGCTTGCACATCCCATCTCTCTGGCCGGCATAGTCCCCGCCCGCCCGGCC-ACCACTCATTT
* * *
5543129 CGTCGCTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGATGGAGGGTTGCG
451 CGTCGCTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATGGAGGGTTGCG
* * * * * * * ** *
5543194 GCAGCAGGATGGGCAGCACGTAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCTGCCCTTC
516 GCAGCAAGATCGACAGCACGCAAAGAGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTC
* *
5543259 TGGGTCGGCTGACCACCCGCACGCCAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
581 TGGGTCCGCTGACCACCCGCACGCCAGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA
5543324 GTCTAAGCAT
646 GTCTAAGCAT
5543334 ACGGAGTTCA
Statistics
Matches: 574, Mismatches: 68, Indels: 24
0.86 0.10 0.04
Matches are distributed among these distances:
652 1 0.00
653 118 0.21
654 265 0.46
655 10 0.02
656 1 0.00
657 64 0.11
658 52 0.09
659 12 0.02
660 51 0.09
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (657 bp):
AGAACTCACACCCCATTAAACAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGT
GCCTGAAATGGGGACACTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
TTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCACGTTTGAGACTAAAAATCCAT
CCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGAAAAAAATAAAAAAAGA
GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCAAAAA
AAATGGCATTGGCACACAGAAATATCAAGATGTCCCTAAACCCACCTACCACACTATCGATCCAC
GCTTGCACATCCCATCTCTCTGGCCGGCATAGTCCCCGCCCGCCCGGCCACCACTCATTTCGTCG
CTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATGGAGGGTTGCGGCAGC
AAGATCGACAGCACGCAAAGAGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGGT
CCGCTGACCACCCGCACGCCAGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTA
AGCATCA
Found at i:5543333 original size:26 final size:26
Alignment explanation
Indices: 5543304--5543356 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5543294 GTTGACTTAG
*
5543304 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
5543330 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
5543356 G
1 G
5543357 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:5544886 original size:883 final size:884
Alignment explanation
Indices: 5542677--5546677 Score: 4344
Period size: 921 Copynumber: 4.5 Consensus size: 884
5542667 CTAAGCATCA
*
5542677 AGAACTCACACCCCATTAAA-AGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
1 AGAACTCACACCCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
5542741 TGCCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG
65 CGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * * *
5542806 AAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAGGTTTTGAGA-CAAAACTC
130 AATTTTTTTGTGCATGACAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGGACCAAAACTC
* **
5542870 CTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGAAAAAAATAGAAAA
194 CTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAA
* * * *
5542935 TGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTGAGGGACCATTGTATGAGTTTACAAGCCA
259 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
** *
5543000 TAAAAATGGCATTGGCACACAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATC
324 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * *
5543065 CAC-GCTTGCGCATCCCATCTCTCTGGCCGGCATA---GTC-CCCGCCCGCCCGGCCGA-CCGCT
389 CACGGCTTGCGCATCCCGTCTCTCTGGCC-GCATAGTGGTCGCCCGCCCG-CCTGCCCACCCGCT
* * * * * * ***
5543124 CATTTCGTCGCTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGATGGAGGG
452 -GTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGG
* * * * ** * * *
5543189 TTGCGGCAGCAGGATGGGCAGCACGTAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCTGC
516 TTGCAGTAGCAGGATCGACAGCACACAGAGGGGGACCCGGTCGATCGTCGGCTTGCGCATCCCGC
* * *
5543254 CCTTCTGGGTCGGCTGACCACCCGCACGC-CAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
581 CCCTCT-GGCCGGCTGAGCACCCGCACGCTCA-TTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
5543318 TTCCCAGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATCAGACCAGATCGAGGGTTACGGCA
644 TTCCCAGTCTAAGCATA-TGA---CA-T--C---C---G----GA-C----CGAGGGTTGCGGCA
* * * ** *
5543383 GCACATGCTGGGCTCGAGCATGTGTTGGT-CTCGTAATTTTCTTCG-TCGGGG---CA----C--
687 GCACTTGCTAGGCTCGGGCATGTGTTGGTGC-CACATTTTTCTTCGCT-GGGGCACCATCGCCGG
* *
5543437 --CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGGTGT
750 AGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGT
* * *
5543500 GCACACATGATGTGCGATGGGTGC-AGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
815 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
5543564 CCTCG
880 CCTCG
*
5543569 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
1 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGC
5543634 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
66 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * * *
5543699 ATTTTTTTGTGCATGAAAATAAAAATATATGGATCACGTCTTCCAAGTTTGGGGA-CAAAACTCC
131 ATTTTTTTGTGCATGACAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGACCAAAACTCC
* * * * * *
5543763 ATCCAAAAAAATTTTTAAAAAATCCCGAATCGCAAGAAGTTTCAAAAATTGTGAAAAATAGAAAA
195 TTCCGAAAAAA-TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAA
* *
5543828 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCA
259 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
5543893 TAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATC
324 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * *
5543958 GACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCTCGCCCGCCCGCCTGCCCACCCGCTC
389 CACGGCTTGCGCATCCCGTCTCTCTGGCC-GCATAGTGGTCGCCCGCCCGCCTGCCCACCCGCT-
* * *
5544023 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGT
452 GTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGT
** * * * * ** * *
5544088 TGTGGCAACAGGATTGACAGCACGCAGAGGGGGACCCGGTTAATCGTCAGCTTTCGCATCCCGCC
517 TGCAGTAGCAGGATCGACAGCACACAGAGGGGGACCCGGTCGATCGTCGGCTTGCGCATCCCGCC
* * * * *
5544153 CCTTTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACATGGGCATACGGAGTTCATTC
582 CCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
5544218 CCAGTCTAAG-AT-TGA-A-CCGGACCGAGGGTTGCGGCAGCACTTGCTAGGCTCGGGCATGTGT
647 CCAGTCTAAGCATATGACATCCGGACCGAGGGTTGCGGCAGCACTTGCTAGGCTCGGGCATGTGT
* **
5544279 TGGTGCCACATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGATTGACGA
712 TGGTGCCACATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGA
* * *
5544344 CATTGGGGTTCTGATGATTGGGGGGGCCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
777 CATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
5544409 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
841 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * *
5544453 AGAACTCACACCCCCTTAAAGAGGATTTAAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGC
1 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGC
* * * *
5544518 GT-TCGAAATGGGGACATTTTTTTCGAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTC
66 GTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* *
5544582 AATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCC
130 AATTTTTTTGTGCATGACAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCC
* * *
5544647 TTCCGAAAAAATTTTCAAAAATCTCGAACCATAAAAAGTTTCAAAAATTGTAAAAAATAGAAAAC
195 TTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAAC
5544712 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
260 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
5544777 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAGCCTATCGATCT
325 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
5544842 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGGTCGCCCGCCCG-CT---CA-------T
390 ACGGCTTGCGCATCCCGTCTCTCTGGCC-GCATAGTGGTCGCCCGCCCGCCTGCCCACCCGCTGT
* * * *
5544896 TTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGATGGTTA
454 TTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTG
* * * * **
5544961 CAGTAGCAGGATCGACAGCACACAAAAGAGGACCCGATCGAT-GCTCGGCTTGATCATCCCGCCC
519 CAGTAGCAGGATCGACAGCACACAGAGGGGGACCCGGTCGATCG-TCGGCTTGCGCATCCCGCCC
* * * * * *
5545025 CTCTGGCCGGTTGAGCGCCTGCACGCTCATTTCGTGTGTTGACTTAGGCACACAGAGTTCATTCC
583 CTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* ** * * * ** *
5545090 CAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGCATACGG-AGTTCA-TTCCCAGTCTAAGAT
648 CAGTCTAAGCATA-TGA---CA-TCCGGACCGAGGGTTGCGGCAG--CACTT----G-CT-AG--
* * * * * ***
5545153 CAGATCGGACCGA-GGGTTACG-ACAGCACATGCTGGGC-TCGGGCATGTGTTGGTGCTACATTT
698 --GCTCGG-GC-ATGTGTT-GGTGC--CACAT--TTTTCTTC--GC---TG--GG-GC-AC----
* ** * * * *
5545215 TTCTTCGTTGGGGCACCATCGCTGGAGCATCGTCGGTGAACCTGATCGGCGGCA-TGAGGGTTCC
741 --CATCG--CCGG-AGCATCGCCGGAG-AAC--C--TG-ACC-GA----CGACATTG-GGGTTCC
* *
5545279 GACGATCGGGGGGGCC-GGGGGTTGTGCCCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
789 GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
5545343 ATATTGGCCCCCTATCCCTCATCAAACCTCG
854 ATATTGGCCCCCTATCCCTCATCAAACCTCG
* * *
5545374 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAACGT
1 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGC
*
5545439 GTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
66 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * *
5545504 ATTTTTTTGTGCGTGACAACAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAAATCCT
131 ATTTTTTTGTGCATGACAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCT
* ** **
5545569 TTCGAAAAAATTTTAAAAAATC-CTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAAC
196 TCCGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAAC
*
5545633 GAGTCGTCTTGCCATGAAACTTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
260 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*
5545698 AAAAATGGCATTGGCATGCAGAGATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
325 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * *
5545763 ACGGCTTGCGCATCCAGTCTCTCTGGCCG-A-CGTAGT-GCCCGCCCGTCC-GCCCACCCGCTTG
390 ACGGCTTGCGCATCCCGTCTCTCTGGCCGCATAGTGGTCGCCCGCCCG-CCTGCCCACCCGC-TG
* ** *
5545824 TTTCGTCGATTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATTGGACCAGACGAAGGGTT
453 TTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTT
* ** ** * *
5545888 GCAATAGCAGGATCGGTAGCACACAGAGGGGGACTTGGCCGATC-CCTGGCTTGCGCATCCCGCC
518 GCAGTAGCAGGATCGACAGCACACAGAGGGGGACCCGGTCGATCGTC-GGCTTGCGCATCCCGCC
* *
5545952 CCTCTGGCCGGCTGAGCACCCGCACGTTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTC
582 CCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
*
5546017 CCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAGCA
647 CCAGTCTAAGCATAT---G---A----CA-TC------CGGACC-G----AGGGTTGCGGCAGCA
* * * *
5546082 CATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCG-TCGGGGCACCATCGCTGCAGCA
690 CTTGCTAGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGCT-GGGGCACCATCGCCGGAGCA
* * * * * * * *
5546146 TCACCGAAGAACCTGACCGACGGCACTGGGGTTCCGATGATCGGGGGGTCGGGGGGGGTGTACGC
754 TCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGC
* *
5546211 ACATGATGTGTGATGGATGCTGGTACTTGGCCC------T------CTATCCCTCATCAAACCTC
819 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
5546264 A
884 G
* * * * *
5546265 AGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGTCTGTAGCCATTAAAGT
1 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGC
* * * * * *
5546330 GTCTAAAATGAGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTGTTTAGCTAA
66 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * *
5546395 ATTTTTTTGTGCATGCCAACAGAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCT
131 ATTTTTTTGTGCATGACAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCT
* * *
5546460 TCCGAAAAAATTTTAAAAAATCT-GAGCCTTAAAAAGTTTCAAAAATCT-TGAAAAATAGAAAAT
196 TCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT-TGTGAAAAATAGAAAAC
* * * *
5546523 GTGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGAGACCACTGTATGAATTTACAAGCCAT
260 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
5546588 AAAAATGGCATTGGCTTGCAGAAATATAAAGATGTGCTTAAACCCACCTACCACCCTATCGATCC
325 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * *
5546653 ATGACTTGCACATCCCGTCTCTCTG
390 ACGGCTTGCGCATCCCGTCTCTCTG
5546678 TCTTAGGCAT
Statistics
Matches: 2649, Mismatches: 329, Indels: 264
0.82 0.10 0.08
Matches are distributed among these distances:
870 1 0.00
871 222 0.08
872 4 0.00
874 4 0.00
875 1 0.00
876 2 0.00
878 2 0.00
879 4 0.00
880 13 0.00
881 2 0.00
882 47 0.02
883 255 0.10
884 225 0.08
885 2 0.00
886 3 0.00
890 181 0.07
891 225 0.08
892 185 0.07
893 176 0.07
894 32 0.01
895 2 0.00
896 4 0.00
897 71 0.03
898 127 0.05
899 2 0.00
901 2 0.00
902 27 0.01
903 45 0.02
906 2 0.00
907 3 0.00
908 2 0.00
909 4 0.00
910 1 0.00
911 2 0.00
912 12 0.00
913 11 0.00
914 1 0.00
915 1 0.00
916 4 0.00
917 11 0.00
918 5 0.00
919 4 0.00
920 2 0.00
921 461 0.17
922 5 0.00
923 26 0.01
924 2 0.00
925 1 0.00
926 1 0.00
927 1 0.00
928 141 0.05
929 35 0.01
930 3 0.00
931 2 0.00
932 5 0.00
933 3 0.00
934 10 0.00
935 5 0.00
939 1 0.00
940 5 0.00
941 1 0.00
944 2 0.00
945 6 0.00
946 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (884 bp):
AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGC
GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
ATTTTTTTGTGCATGACAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCT
TCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACG
AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
CGGCTTGCGCATCCCGTCTCTCTGGCCGCATAGTGGTCGCCCGCCCGCCTGCCCACCCGCTGTTT
CGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCA
GTAGCAGGATCGACAGCACACAGAGGGGGACCCGGTCGATCGTCGGCTTGCGCATCCCGCCCCTC
TGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
TCTAAGCATATGACATCCGGACCGAGGGTTGCGGCAGCACTTGCTAGGCTCGGGCATGTGTTGGT
GCCACATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGACATT
GGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
Found at i:5545115 original size:26 final size:26
Alignment explanation
Indices: 5545079--5545150 Score: 135
Period size: 26 Copynumber: 2.8 Consensus size: 26
5545069 TAGGCACACA
5545079 GAGTTCATTCCCAGTCTAAGCATACG
1 GAGTTCATTCCCAGTCTAAGCATACG
*
5545105 GAGTTCATTCCCAATCTAAGCATACG
1 GAGTTCATTCCCAGTCTAAGCATACG
5545131 GAGTTCATTCCCAGTCTAAG
1 GAGTTCATTCCCAGTCTAAG
5545151 ATCAGATCGG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
GAGTTCATTCCCAGTCTAAGCATACG
Found at i:5546036 original size:26 final size:26
Alignment explanation
Indices: 5546000--5546052 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5545990 GTTGACTTAG
5546000 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5546026 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5546052 G
1 G
5546053 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5549245 original size:176 final size:177
Alignment explanation
Indices: 5548934--5549286 Score: 566
Period size: 176 Copynumber: 2.0 Consensus size: 177
5548924 GTGTGCGCAT
* *
5548934 ATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTTGT
1 ATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTCTGA
* * * *
5548999 GTACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGAG
66 GAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGAG
*
5549064 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
131 TCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACAC
* * *
5549111 ATGATTTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTA-CCCTCATCAAACCTCT-
1 ATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTCTG
*
5549174 AGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGT
65 AGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGA
* *
5549239 GTCTGAAATGGGGTCACTTTTTTCTAATGATCACAAAATCTTGTACAC
130 GTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACAC
5549287 TTCGACTTTT
Statistics
Matches: 162, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
176 115 0.71
177 47 0.29
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (177 bp):
ATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTCTGA
GAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGAG
TCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACAC
Found at i:5554649 original size:176 final size:177
Alignment explanation
Indices: 5554345--5554700 Score: 563
Period size: 176 Copynumber: 2.0 Consensus size: 177
5554335 GGGGTGTGGG
*
5554345 CACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTT
1 CACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTC
* * * *
5554410 TGAGTACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
66 TGAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAACCATTAAA
* *
5554475 GAGTCTGAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTA
131 GAGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTA
* * *
5554522 CACATGATTTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTA-CCCTCATCAAACCT
1 CACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CT
5554586 CT-AGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAACCATTAA
65 CTGAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAACCATTAA
* * * *
5554650 AGTGTCTGGAATGGGGTCACTTTTTTCTAATGATCACAAAATCTTGTA
130 AGAGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTA
5554698 CAC
1 CAC
5554701 TTCGACTTTT
Statistics
Matches: 164, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
176 114 0.70
177 50 0.30
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31
Consensus pattern (177 bp):
CACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTC
TGAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAACCATTAAA
GAGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTA
Found at i:5556072 original size:26 final size:26
Alignment explanation
Indices: 5556036--5556087 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
5556026 GTTGACTTAG
*
5556036 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
5556062 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
5556088 TATCGGACTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:5556961 original size:26 final size:26
Alignment explanation
Indices: 5556932--5556984 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5556922 GTTGACTTAG
*
5556932 GCATACAGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
5556958 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5556984 G
1 G
5556985 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5557577 original size:907 final size:903
Alignment explanation
Indices: 5555172--5561295 Score: 8052
Period size: 896 Copynumber: 6.9 Consensus size: 903
5555162 TTGACTTAGA
* * ** * *
5555172 CATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCACATCCTGGCC
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCACATGCTGGGC
* * * * * * *
5555237 TCGAGCATGTGCTAGTGCCGTACTTTTCTTC-GTCGGGGCACCATCGTCGGAGCATCGTCGAAGA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACT-GGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
5555301 ACCTGACCGACGGCATTGGGGTTTC-GACGATCGGGGTGGCCGGGGGGTTGTGCGCACATGATGT
130 ACCTGACCGGCGGCATTGGGGTTCCTG-CGATCGGGGGGGCCGGGGGG-TGTGCGCACATGATGT
5555365 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-ACGAACTC
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTC
* *
5555429 ACACCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAG
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
5555494 ATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
5555559 TGTGCATTCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCTGAAA
387 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * * * *
5555624 AAATTTTAAAAAATCTCGAATCGTAAAAAGTTTCGAAGATCGTGAAAAATAAAAAACGAGT-GTC
452 AAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
5555688 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
5555753 CATTGGCATGCAGAAATATCAAGATGTGCCTAAACCCACCTACC-ACC---C--T--A----TTG
582 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATCCACGGCTTG
* * * * * * * *
5555806 CGTATCCCGCCTCTCTGGCAGACGTGGTCCCCGCCCGCCCTCCCGCCCGCTCGTTTCATTGGTTG
647 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCCGCCCGCTCGTTTCGTCGGTTG
** * * * * *
5555871 GCTTAGGCATACGGAGTTCATTCTTAGTCTTAGATC-AGACCAGACCGACGGTTGCTA-CAACAG
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ATCAGACTGAGGGTTGC-AGCAGCAG
* * * *
5555934 GATCGGCAGCACGTAGAGGGGGACCTGGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGA
775 GATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGA
* *
5555999 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
840 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
* * * * * * *
5556063 CATACGGAGTTCATTCCCAATCTAATATCGGA-CTGGATCGAGGGTTGCGGCAGCACATGTTGGG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGATC-AGACCGAGGGTTGCGACAGCACATGCTGGG
* *
5556127 CTCGGGCATGTGCTGGTGCCGCA-TTTTCTTC-GTCGGGGTACCA---T-----CAT---CGGAG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACT-GGGGCACCATCGTCGGAGCATCGCCGGAG
* * ** **
5556179 AACCTGACTGACGGCATTGGGGTTCCAACGATCGGGGGGGCCGGTGGGGTGTGCTTACATGATGT
129 AACCTGACCGGCGGCATTGGGGTTCCTGCGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGT
* *
5556244 GTGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * **
5556309 CACCCCCTTATAGAGCATTTGAGATTTTACAAGATTGCTGCCAGTAGTTATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
5556374 TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAATTTCTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
5556439 GTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTCGGGCCAAAACTCCTTCC-ATAA
388 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA-AA
* *
5556503 CAATTTTAAAAAATCCCGAACCGA-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCAT
452 AAATTTTAAAAAATCCCGAACC-ATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
5556567 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * *
5556632 GCATTGGCATGCAGAAATATGTAGATGTGCCTAAACCCACCGACCGCCCTATCAACCCACGGCTT
581 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATCCACGGCTT
* ** * *
5556697 GCGCATCCTGTCTCTCTGGTTGGCGTAGTGCCCGCCCGCCCACCCACTCGCCCACTCGTTTCGTC
646 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CC-CCC-C-CGCCCGCTCGTTTCGTC
* * * * * * *
5556762 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAGGATCGAACCGGACTAAGGCTTGCGGCAG
707 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACTGAGGGTTGCAGCAG
* ** *
5556827 CAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGC
772 CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
** * * * *
5556892 TGGTTGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCATTCTA
837 TGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTA
5556957 AG
902 AG
* * *
5556959 CATACGGAGTTCATTCTCAGTCTAAGATCAGATCAGACCGAGGGTTACGGCAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCACATGCTGGGC
* * * **
5557024 TCGGGCATGTGCTGGTGCTGCATTTTTTTTCGCTGGGGCACCATCGTCGGAGCATCGTTGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * *
5557089 CCTGACCGGCGGCATTGGGGTTCCTGCGATCGGTGGGGCCAGGGGGTGTGCGCACATGATGTGTG
131 CCTGACCGGCGGCATTGGGGTTCCTGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
5557154 ATGGGTGCTCGTCCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
5557219 CCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
5557284 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
5557349 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
391 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* ** * * *
5557414 TTTCAAAAATCTTGAACTATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGC
456 TTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
5557479 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * * * *
5557544 GGCATGCAGAAATATGAAGATGCGCTTAAACCCACCTACCACCCTATCGGTGCACGGCTTGCGCA
586 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATCCACGGCTTGCGCA
* * * * *
5557609 TCCTGTCTCTCTGGCC--C-----GCCCGCCCG----CACTCCCGCTCGTTTCGTCGGTTTGCTA
651 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * *
5557663 AGGCATACGGAGTTCATTCCCAGTCTAGGATC-AGACCGGA-TGAAGGGTTAC-GATAGCAGGAT
716 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ATCAGACTG-AGGGTTGCAG-CAGCAGGAT
* * * * * * * * * * *
5557725 CGGTAGCATGCAAAGGGGGACTCGGTCGATACTCGACATGCACATCCCGCCTCTCTGGCTGACTG
778 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGACTG
* * * *
5557790 AGAGGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTACG
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
* * *
5557851 CATCCGGAGTTCTTTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCACATGCTGGGC
* * * * *
5557916 TTGAGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGACACCATCGTCGGAGCGTCGCTGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * *
5557981 CCTGACCGACGGTATTGGGGTTCC-GACGATCGGGGGGGCCGAGGGGGGCTGTGCGCAAATGATG
131 CCTGACCGGCGGCATTGGGGTTCCTG-CGATCGGGGGGGCC--GGGGGG-TGTGCGCACATGATG
* * *
5558045 TGCGAAGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
5558110 ACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
5558175 ATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCTAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
5558240 TGTGCATGCCAAAAAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
387 TGTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
5558305 AAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATGAAATATAGAAAACGAGTCGT
451 AAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
5558370 CTTGCCATAAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
5558435 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATTGATCCACGGCTT
581 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATCCACGGCTT
* ** * * * *
5558500 GCGCATCCCGTCTCTCTGGCCGGCGTAGTG---G-CCGCCCGTCCGTCCGCTTGTTGCGTCAGTT
646 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCCGCCCGCTCGTTTCGTCGGTT
** * * * * *
5558561 GGCTTAGGCATATAGTGTTCATTCCCAGTCTAAGATCGGATCAAACCGAGGGTTGCAGCACCAGG
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACTGAGGGTTGCAGCAGCAGG
* * * * * * *
5558626 ATCGACAGCATGCAGAGGGGGACCCGGCCAATCCCTGGGTTACGCATCCCGCCCCTCCGG-TCGA
776 ATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCT-GA
* * * *
5558690 CTGAACGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATATAAG
840 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
* * *
5558754 CATACAGAGTTCATTCCCAGTCTAAGATCAAATCAGACCGAGGGTTGCGACAGCACATGCTAGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCACATGCTGGGC
* * * * * *
5558819 TCGGGCATGTGCTGGTGCCGTATTTTTGTTCATTGGGGCAACATCGCCGGAGCATCACCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * * *
5558884 CCTGACCGGCAGCATTGGGATT-TTGGCGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGC
131 CCTGACCGGCGGCATTGGGGTTCCT-GCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
5558948 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATTCCTCTTCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
5559013 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
5559078 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGA
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
5559143 GCATGCCAAAAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTT-CAAAAAAA
390 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
5559207 TTTTAAAAAATCCCGAACCATAAAAAGTTTCGAAAATCATGAAAAATAAAAAATGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
5559272 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
5559337 TGGTACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATCCACGGCTTGCGC
585 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATCCACGGCTTGCGC
* * * *
5559402 ATCCCGTCTTTCTCGTCGACGTAAAGCCGCCTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
650 ATCCCGTCTCTCTGGCCGACGT--A---G--TGCCCGCCCGCCCCCCCGCCCGCTCGTTTCGTCG
* *
5559467 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TAGATCAGACTGAGGGTTGCAGTAG
708 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ATCAGACTGAGGGTTGCAGCAG
* * * * * * * *
5559531 CAGGATCTGCAGGACGTAGAGAGGGACCTGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTAGC
772 CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * *
5559596 CGGCTGACCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-A-GT-
837 TGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTA
5559658 --
902 AG
*
5559658 C-TAC---G---A-T--C-G----A-A-C---T-AGACCGAGGGTTGCGATAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCACATGCTGGGC
* *
5559702 TCGGGCATGTGCTGGTGACACATTTTTCTTC-CTTGGGG-A--A----C----CATCGCCGGAGA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCAC-TGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * * *
5559755 ACCTAACCAGCGGCATTGGTGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGTACGCACAAGAGGT
130 ACCTGACCGGCGGCATTGGGGTTCCTGCGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGT
* *
5559820 GTGATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
5559885 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCAAGTAGCAATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
5559950 TGGGGACATTTTTTTTCAAATGGTCACAAAATCATGTACACTTCTAGTTTTTAGCTGAATTTTTT
323 TGGGGACA-CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
5560015 TGTGCATGCCAAAAAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
387 TGTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
5560080 AAAATTTTAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATGAAATATAGAAAACGAGTCGT
451 AAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
5560145 CTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
5560210 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATTGATCCACGGCTT
581 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATCCACGGCTT
* ** * * * *
5560275 GCGCATCCCGTCTCTCTGGCCGGCGTAGTG---G-CCGCCCGTCCGTCCGCTTGTTACGTCAGTT
646 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCCGCCCGCTCGTTTCGTCGGTT
** * * * *
5560336 GGCTTAGGCATATAGTGTTCATTCCCAGTCTAAGATCGGATCAAACTGAGGGTTGCAGCACCAGG
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACTGAGGGTTGCAGCAGCAGG
* * * * * *
5560401 ATCGACAGCATGCAGAGGGGGACCCGGCCAATCCCTGGGTTGCGCATCCCGCTCCTCTGG-TCGA
776 ATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCT-GA
* * * *
5560465 CTGAACGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATATAAG
840 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
* * * *
5560529 CATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGACAGCACATGCTAGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCACATGCTGGGC
* * * * * *
5560594 TCGGGCATGTGCTGGTGCCGTATTTTTGTTCATTGGGGCAACATCGCCGGAGCATCACCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * * *
5560659 CCTGACCGGCGGCATTGGGATT-TTGGTGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGC
131 CCTGACCGGCGGCATTGGGGTTCCT-GCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
5560723 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
5560788 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAGAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
5560853 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGA
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
5560918 GCATGCCAAAAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTT-C-AAAAAA
390 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
5560981 TTTTAAAAAATCCCGAACCATAAAAAGTTTCGAAAATCATGAAAAATAAAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
5561046 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
5561111 TGGCACGTAGAAATATGAAGATGTGCCTAAAGCCACCTACCACCCTATTGATCCACGGCTTGCGC
585 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATCCACGGCTTGCGC
* * *
5561176 ATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCG----CCCGCCCGCTTGTTTTGTCGGTTGGCT
650 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * *
5561237 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCA
715 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACTGAGGGTTGCAGCAGCA
5561296 CATGCTGGGC
Statistics
Matches: 4598, Mismatches: 504, Indels: 256
0.86 0.09 0.05
Matches are distributed among these distances:
866 181 0.04
867 2 0.00
868 1 0.00
870 2 0.00
871 1 0.00
872 48 0.01
874 147 0.03
875 64 0.01
876 47 0.01
877 211 0.05
878 2 0.00
879 345 0.08
880 113 0.02
881 3 0.00
882 5 0.00
883 61 0.01
884 2 0.00
886 1 0.00
887 3 0.00
888 3 0.00
889 1 0.00
890 20 0.00
891 80 0.02
892 419 0.09
893 4 0.00
894 9 0.00
895 209 0.05
896 511 0.11
897 309 0.07
898 213 0.05
899 96 0.02
900 283 0.06
901 156 0.03
902 1 0.00
903 358 0.08
904 4 0.00
905 6 0.00
906 1 0.00
907 452 0.10
908 45 0.01
909 179 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCGTCGGAGCATCGCCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCTGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACTGAGGGTTGCAGCAGCAGGATCGG
CAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGACTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
Found at i:5557860 original size:26 final size:26
Alignment explanation
Indices: 5557824--5557874 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5557814 GTTGACTTAG
5557824 GCATACGGAGTTCATTCCCAGTCTAC
1 GCATACGGAGTTCATTCCCAGTCTAC
* *
5557850 GCATCCGGAGTTCTTTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
5557875 AGATCAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.20, C:0.31, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAC
Found at i:5564616 original size:26 final size:26
Alignment explanation
Indices: 5564586--5564638 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5564576 GTTGACTTAG
* * *
5564586 GCATATGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGACTAA
*
5564612 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACGAAGTTCATTCCCAGACTAA
5564638 G
1 G
5564639 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGACTAA
Found at i:5565012 original size:887 final size:893
Alignment explanation
Indices: 5563659--5565278 Score: 2389
Period size: 887 Copynumber: 1.8 Consensus size: 893
5563649 TCATCGACTT
* * *
5563659 GCACGCTCGTTTCATGGGTTTACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCGTATGGAGTT
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTT
* * * * * *
5563724 CATTCCCAGTCTAAGATCAGACCAGAGAAAGGGTTATGCAGCACATGCTGGGTTTGGGCATGTGC
66 CATTCCCAGACTAAGATCAGACCAGACAAAGGGTTACGCAACACATGCTGGGCTCGGGCATGTGC
***
5563789 TGGTGTTGCATTTTTCTTCGCCGAGGCACCATCGTCGGACCATCGCCAAAAAACCTGACCGACGG
131 TGGTGCCACATTTTTCTTCGCCGAGGCACCATCGTCGG--CA-CG-----AAACCTGACCGACGG
* * * *
5563854 CATTGAGGTACCGACGATCGGGGGGGCCGGGGGGGGTGTACGCACATGATGTGTGATGGGTGCTG
188 CATTGAGGTACCGACGATCGGGAGGGCCGGGGGGGCTGTACGCACATCATGTGTGATGGGTGATG
*
5563919 GTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAAACCCCCTTAAAG
253 GTACTTAGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTCAAGAACTCAAACCCCCTTAAAG
* * *
5563984 AGCATTTGAGATTTCAGCGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
318 AGCATTTGAGATTTCAGCGGTTTGCTACCAGTAGCCATTAAAGTGTATAAAATGGGGACACTTTT
* *
5564049 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCGACA
383 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAA
* *
5564114 AAAATACAAGGATCACGTCTACCAAGTTTGAGGTCAAAAATCCTCCCAAAAAAATTTTAAAAAAT
448 AAAATACAAGGATCACGTCTACCAAGTTTAAGGCCAAAAATCCTCCCAAAAAAATTTTAAAAAAT
* * * * * *
5564179 C-CAAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTGTTGCCATGAAACT
513 CTC-AAACCACAAAAAGTTTCAAAAATCATGAAAAAAAGAAAACAAGTCATCTTGCCATGAAACT
*
5564243 TCACGTG-AAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
577 TCACGCGAAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* *
5564307 GAAATATAAAGATGTA-CCCAAACCCACCTACCACCCTATCGATCCACGGGTTGCGCATCCCATC
642 GAAATATAAAGATG-AGCCCAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCATC
*
5564371 TCTCGGGCTAGCGTAGTGCCCGCTCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGA
706 TCTCGGGCCAGCGTAGTGCCCGCTCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGA
5564436 GTTCATTCCTAGTCTAAGATCGGACTGAACTGAGGGTTGTGACAACAGTATCGGTAGCACGCAGA
771 GTTCATTCCTAGTCTAAGATCGGACTGAACTGAGGGTTGTGACAACAGTATCGGTAGCACGCAGA
5564501 GTGGGACCCGACCGATCCCCGGCTTGCGTATCCCACCCCTCTGGTCGGCTGAGCGCCC
836 GTGGGACCCGACCGATCCCCGGCTTGCGTATCCCACCCCTCTGGTCGGCTGAGCGCCC
*
5564559 GCACGCTCGTTTCATGGGTTGACTTAGGCATA-TGAAGTTCATTCCTAGTCTAAGCATACGGAGT
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACAG-AGTTCATTCCTAGTCTAAGCATACGGAGT
* * **
5564623 TCATTCCCAGACTAAGATCGGACCGGACCGAGGGTTACGACAACACATGCTGGGCTCGGGCATGT
65 TCATTCCCAGACTAAGATCAGACCAGACAAAGGGTTACG-CAACACATGCTGGGCTCGGGCATGT
* * ** *
5564688 GCTGGTGCCACATTTTTCTTC-TCGGGGCACCATCGTCGG-A-G-AACCTGACCGGTGGCATTGG
129 GCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCGTCGGCACGAAACCTGACCGACGGCATTGA
* * * * * *
5564749 GGTTCCGATGATC-GGAGGGCC-GGGGGGCTGTGCGCACGTCATGTGTGATGTGTTATGGTACTT
194 GGTACCGACGATCGGGAGGGCCGGGGGGGCTGTACGCACATCATGTGTGATGGGTGATGGTACTT
* * * *
5564812 GGCCCTTATGTTGGCCCCCTATCCCTCATAAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
259 AGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTCAAGAACTCAAACCCCCTTAAAGAGCATT
* *
5564877 TGAGATTTTA-CAGGTTTGCTACCAGTAGCCATTAAAGTGTATAAAATGGGGACATTTTTTTCAA
324 TGAGATTTCAGC-GGTTTGCTACCAGTAGCCATTAAAGTGTATAAAATGGGGACACTTTTTTCAA
* *
5564941 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCTAAAAAAAAT
388 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAAAT
* * * *
5565006 ACAAGGATCATGTCTACCAAGTTTAATGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCAA
453 ACAAGGATCACGTCTACCAAGTTTAAGGCCAAAAATCCTCCCAAAAAAATTTTAAAAAATCTCAA
* ** *
5565071 ACCATAAAAAGTTTTGAAAATCATGAAAAAAAGAAAACAAGTCATCTTGGCATGAAACTTCACGC
518 ACCACAAAAAGTTTCAAAAATCATGAAAAAAAGAAAACAAGTCATCTTGCCATGAAACTTCACGC
* *
5565136 GAAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATGGCATTGGCATGCAGAAATA
583 GAAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * * * *
5565201 TGAAGATGAGCCTAAACCTACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGG
648 TAAAGATGAGCCCAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCATCTCTCGGG
5565266 CCAGCGTAGTGCC
713 CCAGCGTAGTGCC
5565279 TGCCCGCATT
Statistics
Matches: 641, Mismatches: 73, Indels: 24
0.87 0.10 0.03
Matches are distributed among these distances:
886 1 0.00
887 326 0.51
888 137 0.21
889 28 0.04
895 1 0.00
897 1 0.00
899 1 0.00
900 106 0.17
901 40 0.06
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26
Consensus pattern (893 bp):
GCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTT
CATTCCCAGACTAAGATCAGACCAGACAAAGGGTTACGCAACACATGCTGGGCTCGGGCATGTGC
TGGTGCCACATTTTTCTTCGCCGAGGCACCATCGTCGGCACGAAACCTGACCGACGGCATTGAGG
TACCGACGATCGGGAGGGCCGGGGGGGCTGTACGCACATCATGTGTGATGGGTGATGGTACTTAG
CCCTTATATTGGCCCCCTATCCCTCATAAAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTG
AGATTTCAGCGGTTTGCTACCAGTAGCCATTAAAGTGTATAAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAAATACA
AGGATCACGTCTACCAAGTTTAAGGCCAAAAATCCTCCCAAAAAAATTTTAAAAAATCTCAAACC
ACAAAAAGTTTCAAAAATCATGAAAAAAAGAAAACAAGTCATCTTGCCATGAAACTTCACGCGAA
AGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAA
AGATGAGCCCAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCATCTCTCGGGCCA
GCGTAGTGCCCGCTCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCT
AGTCTAAGATCGGACTGAACTGAGGGTTGTGACAACAGTATCGGTAGCACGCAGAGTGGGACCCG
ACCGATCCCCGGCTTGCGTATCCCACCCCTCTGGTCGGCTGAGCGCCC
Done.