Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 41 of 129
Found at i:5566403 original size:26 final size:26
Alignment explanation
Indices: 5566367--5566419 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5566357 GTTGACTTAG
* *
5566367 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
5566393 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
5566419 G
1 G
5566420 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:5568712 original size:902 final size:899
Alignment explanation
Indices: 5566567--5576190 Score: 11330
Period size: 902 Copynumber: 10.8 Consensus size: 899
5566557 GAAGGCCAAT
* * ** *
5566567 ACCAAGGCTGGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGG
1 ACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGG
* *
5566632 GGCACCAT---C---G--TCG---GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGG
66 GGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGACGGCATTAGGGTTCCGGCGATCG-GGG
* * * *
5566686 GGTCGAGGGGGGTGTGCGCACACGAT-TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCC
130 GGCCG-GGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * * *
5566750 CTATCCCTCATCAAACCTCAAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTGCATGTTTG
194 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
5566815 CTACCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
259 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
5566880 CACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAAAAAAAAAAACAAGGATCACGTCTACC
324 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACC
** * *
5566945 AAGTTCAGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCTCGAACCTTAAAAAGTTTCAAA
388 AAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAA
* * *
5567010 AATCGTAAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTGAGGGACCAT
453 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* ** ** * * *
5567075 TGCATGAATTTACAAGCCATAAAAATGTTATTGGCACACAAAAATATGAAGATGTACCTAAACTC
518 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * *
5567140 ACCTACCACCCTATCGATCCACGGCTTG-GACATCCCGCCTCTCTAGCTGGCATAGTGCCCGCCA
583 ACCTACCACCCTATCGATCCACGGCTTGCG-CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCA
* * * * *
5567204 GCCCGCCCACCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATT
647 GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * * * **
5567269 GGACCGGACTGAGGGTTATGGCAGCAAGATCGGCAGCACACAGATGGGGACCTGACCTATCCTTG
712 AGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCG
* * * *
5567334 GCTTGCGCATACCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCTTTTCGTGGGTTGACTTAGG
777 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGG
* *
5567399 CATACGGAGTTCATTCCTAGTCTAAGCATATGAAGTTGATTCCCAGTCTAAGATCGGACCGG
842 CATACGGAGTTCATTCC-AGTCTAAGCATATG-AGTTCATTCCCAGTCTAAGAT-AGACC-G
* * * *
5567461 ACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCATCGG
1 ACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGG
** * * ** * * * *
5567526 GGCACCATCATCGGAGTATCG-CAGCAGAACCTGATCGGTGACATTGGGGTTCCGGCAATCGAGA
66 GGCACCATCGCCGGAGCATCGCCAG-AGAACCTGACCGACGGCATTAGGGTTCCGGCGATCG-GG
* * *
5567590 GGGCCGGGGGGGTGTGCGCACATGATGTCCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCC
129 GGGCCGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
5567655 CTATCCCTCATCAAACCTCTAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTGTACAGGTTTG
194 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
5567719 CTACCAATAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAATCTTGTA
259 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
5567783 CACTTCTAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCA
324 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * *
5567848 AGTTCGGGGCTAAAACTCCTTCCAAAAAAAGTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAA
389 AGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAA
* * *
5567913 ATCGTGAAAAATAAAAAACTAGTCGTCTTGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATT
454 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
*
5567978 GTATGAATTTACAAGCCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCA
519 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * *
5568043 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTTTCTCTGGTCGGTGTAGTGCCCGCCAGC
584 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCAGC
* * * * * *
5568108 CCGCCCTCCCGCTCGTTTCCTCGGTTGGCTTAGGGATATGAAGTTCATTCCCAATCTAAGATCAG
649 CCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * * ** *
5568173 ACCAGGCCAAGGGTTGCGGCAGCAAGATCGACAGTACGCAGAGAAGGACCCGATCGATCCCCGGC
714 ACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* * * * * * * * *
5568238 TTGCACTTCCCGCCCCTCTGGCTGACTGAGCGGCCACACGTTCGTTCCATGGGTTGACTTAGGCG
779 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCA
* * *
5568303 TATGGAGTTCATTCCAGTCTAAGCATATGAAGTTCACTCCCAGTCTATGATAGGACCG
844 TACGGAGTTCATTCCAGTCTAAGCATATG-AGTTCATTCCCAGTCTAAGATA-GACCG
* * *
5568361 AACCAAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCCTCG
1 -ACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCG
** * ** * *
5568426 GGGCATTATCGCCGGAGCATCGCCAGAAAACCAAACCGACGGCATTAGGGTTTCGGCAAT-GGGC
65 GGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGACGGCATTAGGGTTCCGGCGATCGGG-
*
5568490 GGG-CGGGGGTGTGCGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
129 GGGCCGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
5568554 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
194 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
5568619 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
259 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
5568684 CACTTCGAGTTTTTGGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCG
324 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
** *** *
5568749 AGTTTGGGGCCAAAGTTCCTTTTGAAAAAATTTTAAAAAATC-CTGAACCATAAAAAGTTTCAAA
389 AGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAA
* * *
5568813 AATCGTGAAAAATAGAAAACGAGTCGTCTTACCATTAAACTTCACGTG-AGGCTTAAAGGACCAT
453 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
** *
5568877 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGCTGTGCCTAAACCC
518 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* *
5568942 ACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGTCC-
583 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCA
* * * * *
5569006 GCCCGTCCGCCCGCTCGTTCCGTCGGTTGGCTTAGCCATACGAAGTTCATTCCCAGTCTAAGATC
647 GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
** * * * * * **
5569071 AGACTGGACCGAGTGTTTCGGCAGCAGGATCGGTAGCACGCAGAGGGGAACCTGGTCGATCCCCG
712 AGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCG
* * * ** *
5569136 ACTTGCGCATCCCGCTCCTCTGGCCGGCTAAGTACCTACACGCTCGTTTCGTGGGTTGACTTAGG
777 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGG
*
5569201 CATACGGAGTTCATTCC---C-AATC-TA--AG---ATT----G-----GATCAGACCG
842 CATACGGAGTTCATTCCAGTCTAAGCATATGAGTTCATTCCCAGTCTAAGAT-AGACCG
* * * * *
5569241 ----AGGGTTGCGGTAGTACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGG
1 ACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGG
* * * * *
5569302 GGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCGGGCGATCGAGGG
66 GGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGACGGCATTAGGGTTCCGGCGATCG-GGG
**
5569367 GGCCGGGGGT-TGTGCG----TG-TGT--GATGGGTGCTGGTACTTGATCCTTATATTAGG-CCC
130 GGCCGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCC
*
5569423 CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
194 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
5569488 CTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAGAATCTTGTA
259 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
** *
5569553 CACTTCGAGTTTTTAGCTGAATTTTTTTAAGCATGCCAACAAAAATACAAGGATCATGTCTACCA
324 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * * * **
5569618 GGTTTGGGGCCAAAACTCCATCCAAAAAAATTTTTAAAAA-CCCTGAACAGTAAAAAGTTTTGAA
389 AGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAA
* * *
5569682 AATCATGAAAAATAGAAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCA
453 AATCGTGAAAAATAG-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
5569747 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC----A-A--AA-A--TGCCTAAACC
517 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
** * * ** * *
5569802 CACCTACCACCCTATCGATCCACGGCTTGCTTATCCCATCCCTCTGGCCAACGTAGTGCCTGCCC
582 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCA
* * * * * *
5569867 GCTCGCCCGCCCGTTCATTTCATCGGTTGGGTTAGGCATACGAAGTTCATTCCTAGTCTAAGATC
647 GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
5569932 AGACCAGACCAAGGGTCACGGCAACAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCG
712 AGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCG
* * * * * *
5569997 ACTTGCGCATCTCACCCCTCTGGCCGGCTGAGCACCCGCACGCTCTTTTCGTGGGTTGACTTAGG
777 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGG
5570062 CATACGGAGTTCATTCCCAGTCTAAG---ATG-G---A----C---C--AG--AG--CG
842 CATACGGAGTTCATT-CCAGTCTAAGCATATGAGTTCATTCCCAGTCTAAGATAGACCG
* *
5570101 ----AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGC-CA
1 ACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CTCG
* * * * * *
5570161 AGGCACCATCGCCAGAGCATCGCCAGAGAACCTGACCGACGACATTCGGGTTCCGACGATCGGAT
65 GGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGACGGCATTAGGGTTCCGGCGATCGG-G
* * *
5570226 GGGCCGAGGG-GTGTGCGCACATGATGTGCGATGGGGGCCGGTACTTGGCCCTTATATTGGCCCC
129 GGGCCGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
5570290 CTATCCCTCACCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTG
194 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
5570355 CTGCCAGTAGCCATTAAAATGTCTGAACTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
259 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * * * * *
5570420 CACTTTGAGTTTTTAACTAAATTTCTTTGTGGATGCCAAAAAAAATACAAGGATCATGTCT---A
324 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * *
5570482 AGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTTAAAA
389 AGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAA
* * *
5570547 ATCGTGAAAAATAGAAAAGGAGTCGTCTTACCATTAAACTTCACGTGAAGGCTTAAGGGACCATT
454 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * * *** * *
5570612 TTATGAATTTACAAGCCATAAAAAAGGCATTGACACATAGAAATATGAAGATGTACGTAAACCCA
519 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * **
5570677 CCTACCACCCTATCGATCCATGGCTTGCGCATCCCATTTCTCTAGCCGGTATAGTGCCCACTCGC
584 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-C-CGC
* *
5570742 CAGCCCGTTTTCTCGCCCGCCCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
645 CAGCCCG----CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * **
5570807 TAGATCAGACCAGACCGATGGTTCCGGCAGCTGGATCGGTAGCACACAGAGGGGGACCTTACCGA
706 AAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
* * * * *
5570872 TCCCCGGCTTGCGCATCCGGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGAGTTAA
771 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGA
*
5570937 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CG-G---A----C---C--AGAT----CG
836 CTTAGGCATACGGAGTTCATT-CCAGTCTAAGCATATGAGTTCATTCCCAGTCTAAGATAGACCG
* * * *
5570983 ----AGGGTTGCGGCAGCACATGCTAGGCTTGGGCATGTGCTCGTGCCGCATTTTTCTTCGTCGG
1 ACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGG
* * * * * * *
5571044 GGCACCATCGTCAGAGCATCGCCGGAGAGCCTGACCGACGACATTTGGGTTCCGACGATCGGGGG
66 GGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGACGGCATTAGGGTTCCGGCGATC-GGGG
*
5571109 GGCCGGGTGG-GTGTGCAG-ACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCC
130 GGCCGGG-GGTGTGTGC-GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
5571172 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTT
193 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
5571237 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTCTTT-AAATGGTCACAAAATCTTG
258 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT-TTTCAAATGGTCACAAAATCTTG
* * *
5571301 TACACTTCTAGTTTTTACCTGAATTTTTTTGTGCATGCCAACAAAGATACAAGGATCACGTCTAC
322 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* ** * * **
5571366 CAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTTGA
387 CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAA
* * * *
5571431 AGATCGTGAAAAATAGAAAACGAATCATCTTGCGATGAAACTTCACGTGAAGGCTTAAGGGACCA
452 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *
5571496 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATAAAGATGTGCCTAAACC
517 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * *
5571561 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCG-TA
582 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCA
* * *
5571625 CGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
647 -GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * * * *
5571690 AAAAACTGATCGAGGGTTACGGCAACAGGATCGGTAGCATGCAGAGAGGGACCC-AGCCGATCCC
711 CAGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCC
** * * * * * *
5571754 TAGCTTGCGCAACCTGCCCCTCTGGCCGGCTGAACGGCCACACGCTCGTTCCATGGGTTGACTTA
775 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTA
* *
5571819 GGCATACGGAGTTCATTCCGAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGG
840 GGCATACGGAGTTCATTCC-AGTCTAAGCATA-TGAGTTCATTCCCAGTCTAAGAT-AGACC-G
* * * * * * *
5571883 ACCGAGGTTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTCCCGCATTTTTCATCATCGG
1 ACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGG
** * * * * * *
5571948 GGTGCC-TCGCTGCAGCATCGTCGGAGAACCTGACCGACGGCATTAAGGATCCGGCGATCGGAGG
66 GGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGACGGCATTAGGGTTCCGGCGATCGG-GG
* *
5572012 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCC
130 GGCCGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
** * *
5572077 TATCGTTCATCAAACCTCGAGAACTCACACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGT
195 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
5572142 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAATTGGTCACAAAATCTTGTAC
260 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
5572207 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCGTGCCAACAAAAATACAAGGATCACATCTACCAA
325 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * *
5572272 GTTT--GGCTCAACAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTCTT-GA
390 GTTTGGGGC-CAA-AACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGT-TTCAA
* *
5572334 AAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
452 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *
5572399 TTGTATGAAATTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACC
517 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* *
5572464 CACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCT-T-T--CTGGC----TGCCCG--A
582 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCA
* * *
5572519 --CCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATGCGGAGTTCATTCCCAGTCTAAGATT
647 GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * ** * *
5572582 AGACCAGACCGAGGGTTACGACAGTAGGACCGACAACACATAGAGGGGGA-CCTAGCCAATCCCC
712 AGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCC
* * *
5572646 AGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
776 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAG
* * *
5572711 GCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACAGG
841 GCATACGGAGTTCATTCC-AGTCTAAGCATA-TGAGTTCATTCCCAGTCTAAGAT-AGAC-CG
* * *
5572774 ACCAAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCAC-CG
1 ACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CTCG
* * * * *
5572838 GCGCACCATCGTCGGAGCATTG-CAGGAGAACCTGACCGACGGCGA-T-GGGGTCCGGTGATCAG
65 GGGCACCATCGCCGGAGCATCGCCA-GAGAACCTGACCGACGGC-ATTAGGGTTCCGGCGATC-G
* * * * *
5572900 CGGGGCCGGGGG-GTCTGCGCACATGGTGTGCGATGGGTGCTGGCACTTGGGCCTTATATTGGCC
127 GGGGGCCGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * * *
5572964 CCCTATCCCTAATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTATAGGTT
192 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
5573029 TGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTG
257 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * * * * * *
5573094 TGCACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGTCAAAAAAAAAATAGGGATCATGTCTAC
322 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * *
5573159 CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAA
387 CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAA
* * * *
5573224 AAATCGTGAAACATACAAAACGAGTCGTCTTGCCATGAAACTTCCCGTGAAGGCTTAAGGGACCT
452 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *
5573289 TTGTATGAATTTACAAGCCATAAAAATAGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
517 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* *
5573354 CACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTTTCTCTGGCCGGCGTAGTG--C-CC-
582 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCA
* * * *
5573415 GCCCGCCCGCACGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATC
647 GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * **
5573480 AGACCAGACTGAGGGTTACGACAGCAGGATCAGCAGCATC-CAGAAGGGGACCCGGCCAATCCTT
712 AGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCA-CGCAGAGGGGGACCCGACCGATCCCC
** * * * * *
5573544 GGCTTGTACATCCTGCCCCTCTGGCCGGTTGAGTGCACACACGCTCATTTCGTGGGTTGACTTAG
776 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAG
* * *
5573609 GCATACAGATTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGG
841 GCATACGGAGTTCATT-CCAGTCTAAGCATAT-GAGTTCATTCCCAGTCTAAGAT-AGACC-G
* * ** *
5573672 ATCGAA--GTCTGTC-GCAGCACATGCTGGGCTTGGGCACATGTTGGTGCCGCATTTTTCTTCAC
1 A-CCAAGGGT-TG-CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-C
** * * * ** * * ** *
5573734 -CGACGAACCATCACCGGAGCATTGCTGGAGAACCTGATCGGCGATATTGGGGTTCCGGCGATCA
62 TCGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGACGGCATTAGGGTTCCGGCGATC-
* * *
5573798 GGGGGGCCGAGGGGGGTGTACGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGG
126 GGGGGGCCG-GGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * * *
5573863 CCCCCTATCCCTCACCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTCAGATTTTACAGG
190 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
5573928 TTTGCTGCTAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
255 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
5573993 TGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATATAAGGATCATGTCT
320 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* ** * * *
5574058 ACCAAGTTTGGGGCCAAAACTGCTTTTGAAAAAAATTTTAAAAACTCCCGAACCGTAAAAGGTTT
385 ACCAAGTTTGGGGCCAAAACT-CCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTT
* **
5574123 AAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
449 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * * * *
5574188 CCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCACGTAGAAATATAAAGATGTACCTAA
514 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * * ** * *
5574253 ACCAAACTACCACCTTATCGATCCACGGCTTGCGCATCGTGTCTCTCTAGCCGGCGTAGTCCCCG
579 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* *
5574318 CCCA-CCCGCCCGCCAGCTCGTTTCATCGGTTGGCTTAAGCATACGGAGTTCATTCCCCA-TCTA
644 -CCAGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT-CCCAGTCTA
* * * * * * * * * ** *
5574381 AGATCAGATCGGACTGAAGGTTGCGGCAGCAAGATCGACAGCACACAGAGGGGTACCCGGTCGAA
707 AGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT
* * * * * * * * ** *
5574446 CCCCGACTTACGCATCCTGCCCTTTTGGCCGGTTGAACGCTCGTACGCTCGTTTCATGGGTTGAC
772 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGAC
*
5574511 TTAGGCATACGGAGTTCATTCCAGTCTAAG-AT-CG-G---A----C---C--------A--G
837 TTAGGCATACGGAGTTCATTCCAGTCTAAGCATATGAGTTCATTCCCAGTCTAAGATAGACCG
** * ** ** *
5574551 ACCAAGGGTT-CTGATAGCACGTGCAAGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCG
1 ACCAAGGGTTGC-GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCG
* * * * *
5574615 GGGCACCATCGTCGGAGCATAGCCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATC-GGG
65 GGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGACGGCATTAGGGTTCCGGCGATCGGGG
* *
5574679 GGTC-GGGGTAGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
130 GGCCGGGGGT--GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
5574743 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGATT
193 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
5574808 GCTGCCAGTAGCCATTAAACTGACTGAAATGGGGACAC-TTTTTCAAATGTTCACAAAATCTTGT
258 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
5574872 GCACTTCGAGTTTTTAGCT-ACCTTTTCTTGTGCATGCCAAAAAAAAAATACAAGGATCACGTCT
323 ACACTTCGAGTTTTTAGCTGA-ATTTTTTTGTGCATGCC--AACAAAAATACAAGGATCACGTCT
* * * ** * *
5574936 ACCAAGTTTAGGGCGAAAACACCTTCTGAAAAAATTTTAAAAAATC-CTGATCTGTAAAAAGTTT
385 ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTT
** * *
5575000 TGAAAATCGTGAAAAGTAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGA
449 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
5575065 CCATTGTATGAATTTACGAGCCATAAAAATGGCATT-GCATGCAGAAATATGAAGATGTACCTAA
514 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * * *
5575129 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGTCCGGTGCAGT----G
579 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
*
5575190 CC-G---GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
644 CCAGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * *
5575251 ATCAGACCGGACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAAAGGAGGACCCGACCGATTC
709 ATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC
* * * * ** * *
5575316 CCAGCTTGCGCATCCC-CCCCTTTGGTCGGTTGAGCGCCTGCACACTCGTTCCGTGGGTTGACTT
774 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTT
** * * *
5575380 AGGCATATAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGG
839 AGGCATACGGAGTTCATTCC-AGTCTAAGCATA-TGAGTTCATTCCCAGTCTAAGAT-AGA-CCG
** * * * **
5575445 ACTGAGGGTT-AGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTTATCGA
1 ACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCG-
* * * * * * * * *
5575509 GGGTACCGTCACCGGAGCGTCACCAGAGAACTTGACCGACGGCATTGGGGTTCCGGCGATTGATG
65 GGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGACGGCATTAGGGTTCCGGCGATCG-GG
* * * *
5575574 GGGCCAGGGGTGGGGTGTGCACACATGATGTGCGATGGGTACTAGTACTTGGCCCTTATATTGGC
129 GGGCC--GGG-GGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
5575639 CCCCTATCCGTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGT
191 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * * * *
5575704 TTACTGCCATTAGTCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATGTT
256 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
*
5575769 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT--CGTGCT
321 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT-CT
* * * *
5575832 GACCGAGTTTGGGGCCATAAA-TCCTTCC-AAAAAATTTTAAAAAATCTCAAACTGCAAAAAGTT
385 -ACCAAGTTTGGGGCCA-AAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTT
* *
5575895 TCAAAAATCATGAAAAATA-AGAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGG
448 TCAAAAATCGTGAAAAATAGA-AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
*
5575959 GACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGTCATTGGCATGCAGAAATATGAAGAT
512 GACCATTGTATGAATTTACAAGCCATAAAAAT-G----G-CATTGGCATGCAGAAATATGAAGAT
* *
5576024 GTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
571 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * *
5576089 AGTGCCCGCCCGCCCGCCTGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
636 AGTGCCCGCCAGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* *
5576154 AATCTAAGATCAGACCAGACCGAGGGTTACAGCAGCA
701 AGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCA
5576191 CATGCCAGGC
Statistics
Matches: 7540, Mismatches: 960, Indels: 443
0.84 0.11 0.05
Matches are distributed among these distances:
859 1 0.00
860 124 0.02
861 248 0.03
862 4 0.00
863 78 0.01
864 73 0.01
865 9 0.00
866 5 0.00
867 267 0.04
868 124 0.02
869 283 0.04
870 34 0.00
871 60 0.01
872 4 0.00
873 56 0.01
875 111 0.01
876 143 0.02
877 295 0.04
878 224 0.03
879 93 0.01
880 10 0.00
881 192 0.03
882 135 0.02
883 227 0.03
884 5 0.00
885 2 0.00
886 219 0.03
889 5 0.00
890 432 0.06
891 304 0.04
892 37 0.00
893 46 0.01
894 132 0.02
895 12 0.00
896 127 0.02
897 42 0.01
898 442 0.06
899 179 0.02
900 404 0.05
901 555 0.07
902 656 0.09
903 611 0.08
904 162 0.02
905 112 0.01
906 169 0.02
907 6 0.00
908 1 0.00
911 80 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
ACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGG
GGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGACGGCATTAGGGTTCCGGCGATCGGGGG
GCCGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
TTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT
CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCAGCCC
GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATA
CGGAGTTCATTCCAGTCTAAGCATATGAGTTCATTCCCAGTCTAAGATAGACCG
Found at i:5570758 original size:16 final size:16
Alignment explanation
Indices: 5570737--5570767 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
5570727 ATAGTGCCCA
5570737 CTCGCCAGCCCGTTTT
1 CTCGCCAGCCCGTTTT
*
5570753 CTCGCCCGCCCGTTT
1 CTCGCCAGCCCGTTT
5570768 CATCGGTTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.03, C:0.48, G:0.19, T:0.29
Consensus pattern (16 bp):
CTCGCCAGCCCGTTTT
Found at i:5571849 original size:26 final size:26
Alignment explanation
Indices: 5571820--5571872 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5571810 GTTGACTTAG
* *
5571820 GCATACGGAGTTCATTCCGAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5571846 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5571872 G
1 G
5571873 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5572209 original size:903 final size:902
Alignment explanation
Indices: 5570061--5576190 Score: 7352
Period size: 903 Copynumber: 6.9 Consensus size: 902
5570051 GTTGACTTAG
* *
5570061 GCATACGGAGTTCATTCCCAGTCTAAGAT-GGACCAGAGCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** ** ** *
5570125 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCCAAGGCACCATCGCCAGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCTGGAGCATCGCCGGAGA
* * * * *
5570190 ACCTGACCGACGACATTCGGGTTCCGACGATCGGATGGGCC-GAGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTAGGGTTCCGGCGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
5570254 CGATGGGGGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
5570319 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAATGTCTGAACT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
5570384 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAACTAAATTTCTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
5570449 TGGATGCCAAAAAAAATACAAGGATCATGTCT---AAGTTTGGGGCCAAAACTCCTTCCAAAAAA
391 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * *
5570511 ATTTTAAAAAATCTCAAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAAGGAGTCGTCTT
456 ATTTTAAAAAATCCCGAACTGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * *
5570576 ACCATTAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAAAGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *** * * *
5570641 TTGACACATAGAAATATGAAGATGTACGTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
586 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * ** * * *
5570706 CATCCCATTTCTCTAGCCGGTATAGTGCCCACTCGCCAGCCCGTTTTCTCGCCCGCCCGTTTCAT
651 CATCCCGTCTCTCTGGCCGGCGTAGTGCCC-GT--CC-GCCCG----CCCGCCCGCTCGTTTCAT
* * * *
5570771 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTTAGATCAGACCAGACCGATGGTTCCGGCA
708 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCA
* * * * *
5570836 GCTGGATCGGTAGCACACAGAGGGGGACCTTA-CCGATCCCCGGCTTGCGCATCCGGCCCCTCTG
773 GCAGGATCGGCAGCACACAGA-GGGGACC-CAGCCGAT-CCCAGCTTGCGCATCCTGCCCCTCTG
* * * * *
5570900 GCCGGCTGAGCGCCCGCACACTCGTTTCGTGAGTTAACTTAGGCATACGGAGTTCATTCCCAGTC
835 GCCGGCTGAACGGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
5570965 TAA
900 TAA
*
5570968 G-AT-C-G-G---A----C---C--AGAT----------CGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
5571007 CTTGGGCATGTGCTCGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-TCAGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCT-GGAGCATCGCCGGAG
* * * * * *
5571071 AGCCTGACCGACGACATTTGGGTTCCGACGATCGGGGGGGCCGGGTGGGTGTGCAG-ACATGATG
130 AACCTGACCGACGGCATTAGGGTTCCGGCGATCGGAGGGGCCGGGGGGGTGTGC-GCACATGATG
*
5571135 TGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
5571200 ACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
5571265 ATGGGGACACTTTCTTT-AAATGGTCACAAAATCTTGTACACTTCTAGTTTTTACCTGAATTTTT
324 ATGGGGACACTTT-TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * **
5571329 TTGTGCATGCCAACAAAGATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAA
388 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
* * * * * * *
5571394 AAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTTGAAGATCGTGAAAAATAGAAAACGAATCAT
453 AAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
5571459 CTTGCGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
5571524 GCATTGGCATGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
5571589 GCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGTACGCCCGCTCGCCCGCTCGTTTCGTCGGTT
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCGCCCGCCCGCTCGTTTCATCGGTT
* * * * * *
5571654 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATAAAAACTGA-TCGAGGGTTACGGCAACAG
713 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTACGGCAGCAG
* ** *
5571718 GATCGGTAGCATGCAGAGAGGGACCCAGCCGATCCCTAGCTTGCGCAACCTGCCCCTCTGGCCGG
777 GATCGGCAGCACACAGAG-GGGACCCAGCCGATCCC-AGCTTGCGCATCCTGCCCCTCTGGCCGG
* * * *
5571783 CTGAACGGCCACACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCGAGTCTAA
840 CTGAACGGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
5571846 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGTTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * *
5571911 CTCGAGCATGTGCTGGTCCCGCATTTTTCATCATCGGGGTGCC-TCGCTGCAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCTGGAGCATCGCCGGAGA
* *
5571975 ACCTGACCGACGGCATTAAGGATCCGGCGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTAGGGTTCCGGCGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTG
* **
5572040 CGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCGTTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
5572105 ACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5572170 GGGGACACATTTTTCAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
5572235 TGCGTGCCAACAAAAATACAAGGATCACATCTACCAAGTTT--GGCTCAACAACTCCTTCCAAAA
391 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAA-AACTCCTTCCAAAA
* * * * *
5572298 AAATTTTAAAAAATCTCGAACTGCAAAAAGTCTTGAAAATCATGAAAAATAGAAAACAAGTCGTC
454 AAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
5572363 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAATTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
5572428 CATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
5572493 CGCATCCCGTCT-T-T--CTGGC----TG--C--CCGACCGCCCGCCCGCTCATTTCATCGGTTG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCGCCCGCCCGCTCGTTTCATCGGTTG
* * * * *
5572546 GCTTAGGCATGCGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTACGACAGTAGGA
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCAGGA
* * * * * * *
5572611 CCGACAACACATAGAGGGGGACCTAGCCAATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCT
779 TCGGCAGCACACAGA-GGGGACCCAGCCGAT-CCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCT
* *
5572676 -AAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
842 GAA-CGGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
5572737 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACAGGACCAAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
5572802 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCACCGGCGCACCATCG-TCGGAGCATTGCAGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCT-GGAGCATCGCCGGAG
* * * * * *
5572866 AACCTGACCGACGGCGA-T-GGGGTCCGGTGATCAGCGGGGCC-GGGGGGTCTGCGCACATGGTG
130 AACCTGACCGACGGC-ATTAGGGTTCCGGCGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATG
* * * *
5572928 TGCGATGGGTGCTGGCACTTGGGCCTTATATTGGCCCCCTATCCCTAATCAAACCTTGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
5572993 ACACCCCCTTAAAGAGCATTTCAGATTTTATAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
5573058 ATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAAATTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
5573123 TGTGCATGTCAAAAAAAAAATAGGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
389 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * *
5573188 AAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAAACATACAAAACGAGTCGTC
454 AAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
5573253 TTGCCATGAAACTTCCCGTGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATAAAAATAG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
5573318 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
5573383 CGCATCCCGTTTCTCTGGCCGGCGTAGTG--C--CCGCCCGCCCGCACGCTCGTTTCGTCGGTTG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCGCCCGCCCGCTCGTTTCATCGGTTG
* * *
5573444 GCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTACGACAGCAGGA
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCAGGA
* * * ** ** *
5573509 TCAGCAGCATC-CAGAAGGGGACCCGGCCAATCCTTGGCTTGTACATCCTGCCCCTCTGGCCGGT
779 TCGGCAGCA-CACAG-AGGGGACCCAGCCGATCC-CAGCTTGCGCATCCTGCCCCTCTGGCCGGC
* * * *
5573573 TG-A-GTGCACACACGCTCATTTCGTGGGTTGACTTAGGCATACAGATTTCATTCCCAGTCTAA
841 TGAACG-GC-CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
5573635 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGA-AGTCTGTC-GCAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT-TG-CGGCAGCACATGCTG
* ** * * ** * * * * *
5573698 GGCTTGGGCACATGTTGGTGCCGCATTTTTCTTCACCGACGAACCATCACCGGAGCATTGCTGGA
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCTGGAGCATCGCCGGA
* * ** * *
5573763 GAACCTGATCGGCGATATTGGGGTTCCGGCGATCAGG-GGGGCCGAGGGGGGTGTACGCACATGA
129 GAACCTGACCGACGGCATTAGGGTTCCGGCGATC-GGAGGGGCCG-GGGGGGTGTGCGCACATGA
* * *
5573827 TGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTTGAGAAC
192 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
5573892 TCACACCCCTTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTG
257 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
5573957 GAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTT
322 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * **
5574022 TTTGTGCATGCCAACAAAAATATAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTGCTTTTGA
387 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCA
* * * * * **
5574087 AAAAAATTTTAAAAACTCCCGAACCGTAAAAGGTTTAAAAAATTATGAAAAATAGAAAACGAGTC
451 AAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTC
*
5574152 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAA
516 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * * * *
5574217 TGGCATTGGCACGTAGAAATATAAAGATGTACCTAAACCAAACTACCACCTTATCGATCCACGGC
581 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
** * * * * *
5574282 TTGCGCATCGTGTCTCTCTAGCCGGCGTAGTCCCCGCCCACCCGCCCGCCAGCTCGTTTCATCGG
646 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCGCCCGCCCGCTCGTTTCATCGG
* * * * *
5574347 TTGGCTTAAGCATACGGAGTTCATTCCCCA-TCTAAGATCAGATCGGACTGAAGGTTGCGGCAGC
711 TTGGCTTAGGCATACGGAGTTCATT-CCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGC
* * * * * * * * *
5574411 AAGATCGACAGCACACAGAGGGGTACCCGGTCGAACCCCGACTTACGCATCCTGCCCTTTTGGCC
775 AGGATCGGCAGCACACAGAGGGG-ACCCAGCCGATCCCAG-CTTGCGCATCCTGCCCCTCTGGCC
* * *
5574476 GGTTGAAC-GCTCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTA
838 GGCTGAACGGC-CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
5574539 A
902 A
** * **
5574540 G-AT-C-G-G---A----C---C----A---GACC--A---AGGGTT-CTGATAGCACGTGCAAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GGCAGCACATGCTGG
** * *
5574578 GCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCG-TCGGAGCATAGCCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCT-GGAGCATCGCCGGA
* * * * *
5574642 GAACCTGACCGGCGGCATTAGGGTTCCGACGATC-G-GGGGTCGGGGTAGGTGTGCACACATGAT
129 GAACCTGACCGACGGCATTAGGGTTCCGGCGATCGGAGGGGCCGGGG-GGGTGTGCGCACATGAT
5574705 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
5574770 CACACCCCCTTAAAGAGCATTTGAGATTTTACAAGATTGCTGCCAGTAGCCATTAAACTGACTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
5574835 AATGGGGACAC-TTTTTCAAATGTTCACAAAATCTTGTGCACTTCGAGTTTTTAGCT-ACCTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTT
* * * * *
5574898 CTTGTGCATGCCAAAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCGAAAACACCTTCT
387 TTTGTGCATGCC--AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * * * *
5574963 GAAAAAATTTTAAAAAATCCTGATCTGTAAAAAGTTTTGAAAATCGTGAAAAGTAGAAAACGAGT
450 AAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGT
* *
5575028 CGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACGAGCCATAAAA
515 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
5575093 ATGGCATT-GCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGG
580 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
5575157 CTTGCGCATCCCATCTCTCT-GTC--CG--GTG-CAGT--GCCGGCCCGCCCGCTCGTTTCGTCG
645 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCGCCCGCCCGCTCGTTTCATCG
* * *
5575214 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGC
710 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGC
* * * * *
5575279 AGGATCGGCAGCACGCAAAGGAGGACCC-GACCGATTCCCAGCTTGCGCATCC-CCCCCTTTGGT
775 AGGATCGGCAGCACACAGAGG-GGACCCAG-CCGA-TCCCAGCTTGCGCATCCTGCCCCTCTGGC
* * * * ** *
5575342 CGGTTGAGC-GCCTGCACACTCGTTCCGTGGGTTGACTTAGGCATATAGAGTTCATTCCTAGTCT
837 CGGCTGAACGGCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
5575406 AA
901 AA
* * * * * *
5575408 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACTGAGGGTT-AGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * * *
5575472 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTTATCGAGGGTACCGTCACCGGAGCGTCACCAGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCG-GGGCACCATCGCTGGAGCATCGCCGGAG
* * * *
5575537 AACTTGACCGACGGCATTGGGGTTCCGGCGAT-TGATGGGGCCAGGGGTGGGGTGTGCACACATG
130 AACCTGACCGACGGCATTAGGGTTCCGGCGATCGGA-GGGGCC--GGG-GGGGTGTGCGCACATG
* * *
5575601 ATGTGCGATGGGTACTAGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAA
191 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * * *
5575666 CTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCATTAGTCATTAAAGTGTCT
256 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
5575731 GAAATGGGGACAATTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTT
321 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
*
5575796 TTTTGTGCATGCCAAAAAAAATACAAGGAT--CGTGCTGACCGAGTTTGGGGCCATAAA-TCCTT
386 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGT-CT-ACCAAGTTTGGGGCCA-AAACTCCTT
* * * *
5575858 CC-AAAAAATTTTAAAAAATCTCAAACTGCAAAAAGTTTCAAAAATCATGAAAAATA-AGAAACG
448 CCAAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTAAAAATCGTGAAAAATAGA-AAACG
* *
5575921 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATA
512 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
5575986 AAAATGGCATTGTCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATT
577 AAAAT-G----G-CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
5576051 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCTT
636 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCGCCCGCCCGCTC
* *
5576116 GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGT
701 GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGT
*
5576181 TACAGCAGCA
766 TACGGCAGCA
5576191 CATGCCAGGC
Statistics
Matches: 4501, Mismatches: 569, Indels: 302
0.84 0.11 0.06
Matches are distributed among these distances:
866 1 0.00
867 60 0.01
868 120 0.03
869 8 0.00
870 3 0.00
871 3 0.00
872 1 0.00
873 2 0.00
875 4 0.00
876 127 0.03
877 284 0.06
878 218 0.05
879 91 0.02
880 3 0.00
881 1 0.00
882 126 0.03
883 226 0.05
884 8 0.00
885 2 0.00
886 223 0.05
887 1 0.00
889 4 0.00
890 438 0.10
891 304 0.07
892 39 0.01
893 48 0.01
894 63 0.01
895 6 0.00
896 125 0.03
897 42 0.01
898 453 0.10
899 81 0.02
900 3 0.00
901 256 0.06
902 219 0.05
903 565 0.13
904 65 0.01
905 18 0.00
906 167 0.04
907 5 0.00
908 3 0.00
909 2 0.00
911 83 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCTGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTAGGGTTCCGGCGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
ATTTTAAAAAATCCCGAACTGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCAGGATC
GGCAGCACACAGAGGGGACCCAGCCGATCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAAC
GGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5572747 original size:26 final size:26
Alignment explanation
Indices: 5572711--5572763 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5572701 GTTGACTTAG
* *
5572711 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5572737 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5572763 G
1 G
5572764 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5573639 original size:26 final size:26
Alignment explanation
Indices: 5573609--5573661 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5573599 GTTGACTTAG
*
5573609 GCATACAGATTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
5573635 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5573661 G
1 G
5573662 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5575411 original size:26 final size:26
Alignment explanation
Indices: 5575382--5575434 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5575372 GTTGACTTAG
* * *
5575382 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
5575408 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
5575434 G
1 G
5575435 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:5577988 original size:869 final size:864
Alignment explanation
Indices: 5576132--5579528 Score: 4248
Period size: 869 Copynumber: 3.9 Consensus size: 864
5576122 TCGGTTGGCT
* * * *
5576132 TAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACAGCAGCACATGCC
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCACATGCT
* * *** * * * * *
5576197 AGG-CTCGGGCATGTGCTTGTGTTGCAATTTTCTTCGTCGGGGCACCATCGTTGGAGCATCGTCG
66 GGGCCT-GGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCGCCATCGTCGAAGCATCGT-A
* * * * * *
5576261 GAGAACCTGACC-A-GTGACATTAGGGTTCCGGTGATCGGGGGGCCG-GGGGGTTGTGTGCACAT
129 GAGAACCTAACCGACG-G-CATT--GG----GGT--TCTGGCGACCGAGGGGGCTGTGCGCACAT
* * *
5576323 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATGGGCCCCCTATCCCTCATCAAACTTCGAGA
184 GATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGA
**
5576388 ACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
248 ACTCACACCCCACTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
5576453 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTACCTGAA-T
313 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
5576517 TTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCCTTCC
378 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCC
* **
5576582 GAAAAAATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGT
443 GAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGT
** * * * *
5576647 TGTCCTGCCGTGAAACCTCACGTGAAGGCTTAAGGGACCATT-TAATGCATTTACAAGCCATAAA
508 CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT-ATGAATTTACAAGCCATAAA
* * * *
5576711 AATGGCATTGGCACATAGAAATATGACA-ATGTGCCTAAACCCACCTACAACCCTATCGAACCAC
572 AATGGCATTGGCATACAGAAATATGA-AGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
*
5576775 GGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCTGCCCG-----CCCGCTCGTTTCGTCGG
636 GGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCTCCCCGCTCGTTTCGTCGG
** * * *
5576835 TTGGCTTAGGCATACGGAGCACATTCCTAGTCTAAGATC-GAATC-GAATCGA-GGTTACGGGAG
701 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ATCAG-ACCGAGGGTTACGGCAG
* * * *
5576897 CAAGATCGGCAGCACGCAGTGGGGGACCCGACCGATCCCTGGCTTGTGCATCCCGCCCCTCTAGC
764 CAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTAGC
* * *
5576962 CGATTGAGTGCCTGCACG-TTCGTTTTGTGGGTTGACT
829 CG-TTGAGCGCCCGCACGCTT-GTTTTGTGGGTTGACA
5576999 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCACATGCT
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCACATGCT
5577064 GGGCCTGGGCATGT-CTGGTGCCACATTTTTCTTCGTCGGGGCGCCATCGTCGAAGCATCGCTAG
66 GGGCCTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCGCCATCGTCGAAGCATCG-TAG
*
5577128 AGAACCTAACCGACGGCATTGGGGTTCTGGCGACCGAGGGGG-TGTGCGCATATGATGTGCGATG
130 AGAACCTAACCGACGGCATTGGGGTTCTGGCGACCGAGGGGGCTGTGCGCACATGATGTGCGATG
*
5577192 GGTGCTAGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAGCTCACACCCTC
195 GGTGCTAGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC-C
5577257 -CTAAAGAGCATTTGAGATTTTATTA-GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
259 ACTAAAGAGCATTTGAGATTTTA-TAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
5577320 ACACTTTTTTCAAATGCTCACAAAATCTTGTACACTACGAGTTTTTAGCTGAATTGTTTTGTGCA
323 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * ** * *
5577385 TGCCAACAAAAATACAAGGATCGCATCTTCCAAATTAAGGGCCAAAAATCCTTTCGAAAAAATTT
388 TGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
5577450 TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAAT-ATTGTGAAAAATAGAAAACAAGTCATCTTG
453 TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCA---TGAAAAATAGAAAACAAGTCATCTTG
* *
5577514 CCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCAT
515 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
5577579 TGGCATACAGCAATATGAATATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGC
580 TGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
*
5577644 ATCCCGTCTCTCTGGCTGGTGTAGTGCCCGCCCGCCCATCCATCCGCTCGTTTCGTCGGTTGGCT
645 ATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCC-TCC--CCGCTCGTTTCGTCGGTTGGCT
* * *
5577709 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTCCAGCAGTAGGATCG
707 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGCAGCAGGATCG
* * *
5577774 GTAGCACACAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTAGCCAGTTGAG
772 GTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTAGCC-GTTGAG
5577839 CGCCCGCACGCTTGTTTTGTGGGTTGACA
836 CGCCCGCACGCTTGTTTTGTGGGTTGACA
5577868 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCACATGCT
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCACATGCT
5577933 GGGCCTGGGCATGT-CTGGTGCCACATTTTTCTTCGTCGGGGCGCCATCGTCGAAGCATCGCTAG
66 GGGCCTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCGCCATCGTCGAAGCATCG-TAG
*
5577997 AGAACCTAACCGACGGCATTGGGGTTCTGGCGACCGAGGGGG-TGTGCGCATATGATGTGCGATG
130 AGAACCTAACCGACGGCATTGGGGTTCTGGCGACCGAGGGGGCTGTGCGCACATGATGTGCGATG
*
5578061 GGTGCTAGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAGCTCACACCCTC
195 GGTGCTAGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC-C
5578126 -CTAAAGAGCATTTGAGATTTTATTA-GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
259 ACTAAAGAGCATTTGAGATTTTA-TAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
5578189 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGAA
323 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
5578254 TGCCAAAAAAAATACAAGGATCACA-CTTAACAAGTTTGGGACCAAAACTCCTTCTGAAAAAAAT
388 TGCCAAAAAAAATACAAGGATCACATC-TACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAAAT
* * *** *
5578318 TTTAAAAAATCTCGAACTGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGGGTCATCTTCC
451 TTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCATCTTGC
* *
5578383 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATT
516 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
5578448 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGACTTGCGCA
581 GGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* ** * *
5578513 TCTCGTCTCTCTGGCCAGTGTAGTGCCCGCCCGCCCGCTCGCCTGCTCGTTTCGTCGGTTGGCTT
646 TCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCG-CC-CTC-CCCGCTCGTTTCGTCGGTTGGCTT
* * * * *
5578578 AGGCATACGGAGTTCATT-CTAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGG
708 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGCAGCAGGATCGG
* * * * * * * * *
5578642 TAGCACGCAAAGGGAGACTCGGCCGATCCTCGGCTTGTGCATCCCACCCCTCTGGTCGGCTGAGC
773 TAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTAG-CCGTTGAGC
* *
5578707 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
837 GCCCGCACGCTTGTTTTGTGGGTTG----A--CA
* **
5578741 TACGAAGTTCATTCCCAATCTAAGGATGCGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGA
1 TA-G--G--------C-A--T----A--CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* * * * * ** **
5578806 GGGTTGCGGGAGTAGATGCTGGGCAC-GGGCATGTGCTGGTGTCGTATTTTTCTTCG-CAAGG-G
46 GGGTTACGGTAGCACATGCTGGGC-CTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCG
* *** * *
5578868 -CA-C--C--ATCATCG--GAGAACCTAACCGGTAGCATTGGGATTCCGATGATCGAGGGGCCGG
110 CCATCGTCGAAGCATCGTAGAGAACCTAACCGACGGCATTGGGGTT-C--TG-GCGA----CC-G
* *
5578925 GGGGGGCTGTGCGCACATGATGTGCGATGGCTGCTCA-TACTTGGCCCTTATATTGGCCCCTTAT
166 AGGGGGCTGTGCGCACATGATGTGCGATGGGTGCT-AGTACTTGGCCCTTATATTGGCCCC-TAT
* * *
5578989 CCCACATCAAACCTCGAGAACTCACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
229 CCCTCATCAAACCTCGAGAACTCACACCCCACTAAAGAGCATTTGAGATTTTATAGGTTTGCTGC
5579054 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
294 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
5579119 TCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
359 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTT
** * **
5579184 TGGGGCCAAAACTTATTCCGAAAAAATTTTAAAACAT-TCTGAACCATAAAAAGTTTCAAAAATC
424 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATC
* * *
5579248 GTGAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
488 ATGAAAAATAGAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
5579313 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAGGAAGATGTGCCTAAACCCACCT
553 TGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCT
** * *
5579378 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-TCGGCACAGTGCCCACCTGCCC
618 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCT-GGCGTAGTGCCCGCCCGCCC
* * * * * * * *
5579442 GCCCGCTCGCTCATTTTGTCGGTTGGCTTAAGCATAAGGAGTTCATTCCCAGTCCAAGATCGGAC
682 -TCC-C-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
* * *
5579507 CAGATCAAGGGTTACGACAGCA
744 CAGACCGAGGGTTACGGCAGCA
5579529 CATGCTGTGC
Statistics
Matches: 2241, Mismatches: 207, Indels: 137
0.87 0.08 0.05
Matches are distributed among these distances:
857 143 0.06
858 154 0.07
859 6 0.00
860 171 0.08
861 1 0.00
864 2 0.00
866 54 0.02
867 187 0.08
868 277 0.12
869 525 0.23
870 46 0.02
871 2 0.00
873 4 0.00
874 1 0.00
876 1 0.00
883 23 0.01
884 2 0.00
885 1 0.00
886 8 0.00
887 4 0.00
888 1 0.00
890 1 0.00
891 7 0.00
892 13 0.01
893 357 0.16
894 249 0.11
895 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (864 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCACATGCT
GGGCCTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCGCCATCGTCGAAGCATCGTAGA
GAACCTAACCGACGGCATTGGGGTTCTGGCGACCGAGGGGGCTGTGCGCACATGATGTGCGATGG
GTGCTAGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCAC
TAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
AAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCATCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCTCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGGCAGCAGGATCGGTAGCACGC
AGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTAGCCGTTGAGCGCCCGCACG
CTTGTTTTGTGGGTTGACA
Found at i:5580210 original size:26 final size:26
Alignment explanation
Indices: 5580174--5580226 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5580164 TTTGACTTAG
5580174 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5580200 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5580226 G
1 G
5580227 ATCACATTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5580483 original size:727 final size:725
Alignment explanation
Indices: 5578633--5580797 Score: 2554
Period size: 726 Copynumber: 3.0 Consensus size: 725
5578623 GTTGCGGTAG
* * * ** * *
5578633 CAGGATCGGTAGCACGCAAAG-GGAGACTCGGCCGATCCTCGGCTTGTGCATCCCACCCCTCTGG
1 CAGGATCGGCAGCACACAAAGTGG-GACCCGATCGATCCACGGCTTGTGCATCCCGCCCCTCTGG
* * * *
5578697 TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCT
65 TCGGCTAAGCTCCCACACGCTCGTTTCGT-GGTTGACTTAGGCATACGGAGTTCATTCCC-ATCT
* * * * * * *
5578762 AAGGATGCGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGGAGTAGATGCTG
128 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGGCAGCACATGCTG
* * * * * ** ** * *
5578827 GGCACGGGCATGTGCTGGTGTCGTATTTTTCTTCGCAAGGGCACCATCATCGGAG-AAC-CT---
193 AGCTCGGGCATGTGTTGGTGCCATATTTTTCTTTACCGGGGCACCATCGTCGGAGCATCGCTGGA
* * *
5578887 -AACC-GGT--A--GCATTGGGATTCCGATGATC-GAGGGGCCGGGGGGGGCTGTGCGCACATGA
258 GAACCTGATCGACGGCATTGGGGTTCCGATGATCGGGGGGGCC--GGGGGG-TGTGCGCACATGA
* ** * *
5578945 TGTGCGATGGCTGCTCATACTTGGCCCTTATATTGGCCCCTTATCCCACATCAAACCTCGAGAAC
320 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
5579010 TCACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
385 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
5579075 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTT
450 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTT
* **
5579140 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTTATTCCG
514 TTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCCAAAA-TCCTTCCG
* * * *
5579204 AAAAAATTTTAAAACAT-TCTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACAAGT
578 AAAAAATTTTAAAA-ATCTC-GAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
5579268 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
641 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
** *
5579333 ATGGCATTGGCATGCAGAAA
706 ACCGCATAGGCATGCAGAAA
* * * ** *** * * * *
5579353 TAGGAAGAT-GTGC--CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
1 CA-G--GATCG-GCAGC-ACA-CAAAGTGGGACCCGATCGATCCACGGCTTGTGCATCCCGCCCC
* ** * * * **
5579415 TCTGGTCGGC-ACAG-TGCCCAC-CTGCCCG-CCCGCTCGCTCA-TTTTG--T-C-G-G----TT
60 TCTGGTCGGCTA-AGCT-CCCACAC-GCTCGTTTCG-TGGTTGACTTAGGCATACGGAGTTCATT
** * * * * * *
5579466 GGC-T-TAAGCATAAGGAGTTCATTCCCAGTCCAAGATCGGACCAGATCAAGGGTTACGACAGCA
121 CCCATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGGCAGCA
* ** * * *
5579529 CATGCTGTGCTCAAGCATGTGCTAGG-GCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCA
186 CATGCTGAGCTCGGGCATGTG-TTGGTGCCATATTTTTCTTTACCGGGGCACCATCGTCGGAGCA
5579593 TCG-TCGGAGAACCTGATCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGC
250 TCGCT-GGAGAACCTGATCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGC
* * * *
5579657 GCATGATGTGCAATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT
314 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * *
5579722 GAGAACTCACACCCCCTTAAATAGCATTTGAGATTTTTATAGGTTTGCTGCCAGTAGCAATTAAA
379 GAGAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
5579787 GTGTCTGAAATAGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT
443 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
5579852 GAATTTTTTCATGCATGACAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCGAAAATC
508 GAATTTTTT-ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCCAAAATC
* **
5579917 CTTCCGAAAAAATTTTAAGAAATCTCGAACCACAAAAGGTTTCAAAAATCACAAAAAATAGAAAA
572 CTTCCGAAAAAATTTTAA-AAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* *
5579982 CGATTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCA
636 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * ** *
5580047 TAAAGACCG-A-AGG-TTGTGGCAA
701 TAAAAACCGCATAGGCATGCAGAAA
* * *
5580069 CAGGATCGGCAGCACACAAAGTGGGACCCGATCGATCCCCGGTTTGTGCATCCCGCCCCTCTGGC
1 CAGGATCGGCAGCACACAAAGTGGGACCCGATCGATCCACGGCTTGTGCATCCCGCCCCTCTGGT
5580134 CGGCTAAGCTCCCACACGCTCGTTTCGTGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
66 CGGCTAAGCTCCCACACGCTCGTTTCGTGG-TTGACTTAGGCATACGGAGTTCATTCCCA-TCTA
** * *
5580199 AGCATACGGAGTTCATTCCCAGTCTAAGATCACATTAGACCGAGGGTTATGGCAGCACATGCTGA
129 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGGCAGCACATGCTGA
* *
5580264 GCTCGGGCATGTGTTGGTGCCATATTTTTCTTTATCGGGGCACCATCGCCGGAGCATCGCTGGAG
194 GCTCGGGCATGTGTTGGTGCCATATTTTTCTTTACCGGGGCACCATCGTCGGAGCATCGCTGGAG
* **
5580329 AACCTGATCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCATGGGGTGTGCGCACATGATGTG
259 AACCTGATCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
5580394 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTAAC
324 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
5580459 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
389 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5580524 GGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTGTTTTT
454 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTA
* * * * * * * *
5580589 TTCGTGCCAAAAAAAACACAAAGATCACGTCTACCAAGTTTGGTGCCCAAACTCCTTCCGAAAAA
518 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCCAAAATCCTTCCGAAAAA
* *
5580654 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
583 ATTTT-AAAAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * **
5580719 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCA
647 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAACCGCA
* *
5580784 TTGGCAGGCAGAAA
712 TAGGCATGCAGAAA
5580798 TATGAAGATG
Statistics
Matches: 1196, Mismatches: 191, Indels: 107
0.80 0.13 0.07
Matches are distributed among these distances:
709 92 0.08
710 6 0.01
712 3 0.00
713 58 0.05
714 10 0.01
715 9 0.01
716 9 0.01
717 3 0.00
718 104 0.09
719 262 0.22
720 34 0.03
721 12 0.01
722 8 0.01
723 52 0.04
724 3 0.00
726 266 0.22
727 258 0.22
728 3 0.00
729 4 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (725 bp):
CAGGATCGGCAGCACACAAAGTGGGACCCGATCGATCCACGGCTTGTGCATCCCGCCCCTCTGGT
CGGCTAAGCTCCCACACGCTCGTTTCGTGGTTGACTTAGGCATACGGAGTTCATTCCCATCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGGCAGCACATGCTGAGC
TCGGGCATGTGTTGGTGCCATATTTTTCTTTACCGGGGCACCATCGTCGGAGCATCGCTGGAGAA
CCTGATCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTATGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCCAAAATCCTTCCGAAAAAATT
TTAAAAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAACCGCATAGG
CATGCAGAAA
Found at i:5581104 original size:26 final size:26
Alignment explanation
Indices: 5581068--5581117 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
5581058 GAGTTAGGCG
5581068 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
*
5581094 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
5581118 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:5582546 original size:895 final size:895
Alignment explanation
Indices: 5580050--5583946 Score: 5039
Period size: 895 Copynumber: 4.4 Consensus size: 895
5580040 CAAGCCATAA
* * * * * *
5580050 AGACCGAAGGTTGTGGCAACAGGATCGGCAGCACACA-AAGTGGGACCCGATCGATCCCCGGTTT
1 AGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGT-GGACCCGACCGATCCCCGGCTT
* * * * *
5580114 GTGCATCCCGCCCCTCTGGCCGGCTAAGCTCCCACACGCTCGTTTCGTGGTTTGACTTAGGCATA
65 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
*
5580179 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-ACATTAGACCGAG
130 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAC--CAGACCGAG
** * * * **
5580243 GGTTATGGCAGCACATGCTGAGCTCGGGCATGTGTTGGTGCCATATTTTTCTTTATCGGGGCACC
193 GGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CACATTTTTCTTCGTCGGGGCACC
* * * * * * * **
5580308 ATCGCCGGAGCATCGCTGGAGAACCTGATCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAT
257 ATCGCTGGAGCATCACCGGGGAACCTGACCGACGGCATTAGGGTTCCGGCGATCGGGGGGGCCGG
5580373 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
322 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
5580438 CATCAAACCTCGAGAAGTAACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGT
387 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
5580503 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGA
452 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * * *
5580568 GTTTTTAGCTGAATTGTTTTT-TTCGTGCCAAAAAAAACACAAAGATCACGTCTACCAAGTTTGG
517 GTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * *
5580632 TGCCCAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGA
581 GGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGA
*
5580697 AAAATAGAAAACGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAA
646 AAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
5580762 TTTAAAAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCAACCTACCA
711 TTTACAAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * *
5580827 CCCTATCGATCCACGTCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT---G--C-CCGCCCGTT
776 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCGCCCGCCGCCCGCT
* * * *
5580886 CGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAAACC
841 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC
* ***** * * * * * *
5580941 GGACCGAGGGTTACAATAGCAGGATCGACAACACGCAAAGGGGGACCCGACCAATGCCCGGCTTG
1 AGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGTGGACCCGACCGATCCCCGGCTTG
* * * * *
5581006 CACATCCTGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGAGTTAGGCGTAC
66 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* **
5581071 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGG
131 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGG
* * *
5581136 TTGCAGCAGCACATACAGGGCTCGGGCATGTGCTGGTGCTGA-ATTTTTCTTCGTCGGGGCACCA
195 TTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC--ACATTTTTCTTCGTCGGGGCACCA
* * * ** *
5581200 TC-TTCGGAGCATCACCGGGGAACCTGACAGGCGGCATTAGGGTTCTAGCGATCGGGGGCGCCGG
258 TCGCT-GGAGCATCACCGGGGAACCTGACCGACGGCATTAGGGTTCCGGCGATCGGGGGGGCC-G
* *
5581264 GGGGGTGGGCGCACATGATGTGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCC
321 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
5581329 TCGTCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAG
386 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
5581394 TAGCCATTAAAGTGTCTAAAATGGGG-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
451 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
5581458 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGG
516 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
*** * * * * ** *
5581523 GATGAAAACGCCTTCCAAAAAAAGTTT-AAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGA
581 GGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGA
* * * *
5581587 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGTTTAGGGGACCATTGTATGAA
646 AAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
5581652 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAACATGAAGATGTGCCTAAACCCACCTACCA
711 TTTACAAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
** * * *
5581717 CCCTATTAATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCATAGTGCTCACCCGGCCGCCCG
776 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGC-CGCCC-GCCGCCCG
5581782 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC
839 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC
* * *
5581839 AGACCGAGGGTTGTGGCAGCAAGATTGGCAGCACACAGAGGTGGACCCGACCGATCCCCGGCTTG
1 AGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGTGGACCCGACCGATCCCCGGCTTG
* * * * * * * * *
5581904 TGCATCCCGTCCCTCTAGCCGACTGAGCGCCCGTACACTCATTCCGTGGGTTGTCTTAGGCATAC
66 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * *
5581969 GGAGTTCATTCCCAGTCTAACCGTACGGAGTTCATTCGCAATCTAAGATTCGACCAGACCGAGGG
131 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCGACCAGACCGAGGG
* * **
5582034 TTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGT-CAGCATTTTTCTTCACCGGGGCACCAT
195 TTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCA-CATTTTTCTTCGTCGGGGCACCAT
** *
5582098 CGCTGGAGCATCGTCGGGGAACCTGACCGACGGCATTAGGGTTCCGGTGATC-GGGGGG-CGGGG
259 CGCTGGAGCATCACCGGGGAACCTGACCGACGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGG
*
5582161 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCA
324 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
** *
5582226 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATTGGTTTGTTGCCAGTAG
389 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * * *
5582291 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAGAAAATCTTTTACACTTCCAAT
454 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
*
5582356 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAACTTTGGGGC
519 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * *
5582421 CAAAACTCCTTCCGAAAAAATTTT-AAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAA
584 CAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
* *
5582485 ATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
649 ATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
5582550 ACAAGCCATAAAAATTGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
714 ACAAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * ***
5582615 TGTCGATCCACTGCTTGTGCATCCCGTCTCTCTGGTCGGTGTAGTGCCTGCCCGCCTGCCCGCTC
779 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCC-GCCCGCC-GCCCGCTC
* *
5582680 GTTTCCTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC-GAATC
842 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ATC
* ** * ** * *
5582734 GGACCGAGGGTTACGGCAGCAAGATCGAAAGCACGCAGAGGGGGA-CCTAGCCGATCCCCGGCTT
1 AGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGTGGACCCGA-CCGATCCCCGGCTT
* *
5582798 GCGCATCCCGCCCCTCTGTCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
65 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
5582863 CGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C---C------CGACC--A---AGGG
130 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGACCAGACCGAGGG
* * * *
5582903 TTGCAGCAGCACATGCTGGGCTCGGGCAAGTGATGGTGCCACATTTTTCTTTGTCGGGGCACCAT
195 TTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CACATTTTTCTTCGTCGGGGCACCAT
*
5582968 CG-TCGGAGCATCACCGGAGG-ACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCGC
259 CGCT-GGAGCATCACCGG-GGAACCTGACCGACGGCATTAGGGTTCCGGCGATCGGGGGGGCCG-
* * * * *
5583031 GGGGGTGTGCGTACATGATGTCCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCTTATACC
321 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
5583096 TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAG
386 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
** * * * *
5583161 TAGTTATTAAAGTGTTTGGAATGGTGATA-TTGTTTTCAAATGGTCACAAAATCTTGTACACTTC
451 TAGCCATTAAAGTGTCTGAAATGGGGACACTT-TTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
5583225 GATTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
515 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * * *
5583290 GGGCCATAACTCCTTCTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTGAAAAATTATG
580 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG
* * *
5583355 AAAAATAGAAAATGAGTCACCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
645 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
5583420 ATTTACAAGCCATAAAAATGGCATTGTCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
710 ATTTACAAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
*
5583485 ACCCCATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCTACCC
775 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTG-CCGCCCG-----CC
* *
5583550 GTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGATCAGA-C
834 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC
* * * **
5583611 CGAACCAAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGA-GTGGGACCTGACCGATCCTTGGCT
1 AG-ACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGT-GGACCCGACCGATCCCCGGCT
* * ** * * * *
5583675 TGCACATCCCACCCCTCTGGTTGGCTGAGCGCCTGTACGCTCGTTACGTGAGTTGACTTAGGCAT
64 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * * *
5583740 ACAGATTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
129 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAG
* * * * * *
5583805 GGTAACAACAGCATATACTGGGCTCGGGCATGTGTTGGTGTCACATTTTTCTTCGTCGGGGCACA
193 GGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CACATTTTTCTTCGTCGGGGCACC
* * * * * ** * * *
5583870 ATCACCGAAGCATTACCGGAGAACCTGACCGACGGTGTTGGGGTTCTGGCGATCAGGGGGGCCGG
257 ATCGCTGGAGCATCACCGGGGAACCTGACCGACGGCATTAGGGTTCCGGCGATCGGGGGGGCC-G
5583935 GGTGGGTGTGCG
321 GG-GGGTGTGCG
5583947 TACGCTCATT
Statistics
Matches: 2602, Mismatches: 330, Indels: 134
0.85 0.11 0.04
Matches are distributed among these distances:
869 37 0.01
870 64 0.02
871 10 0.00
872 5 0.00
873 258 0.10
874 203 0.08
875 2 0.00
877 3 0.00
878 174 0.07
879 7 0.00
881 2 0.00
882 1 0.00
884 1 0.00
885 1 0.00
888 1 0.00
889 1 0.00
890 200 0.08
891 370 0.14
892 152 0.06
893 3 0.00
894 157 0.06
895 505 0.19
896 6 0.00
897 64 0.02
898 249 0.10
899 6 0.00
901 1 0.00
903 1 0.00
904 108 0.04
905 10 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (895 bp):
AGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGTGGACCCGACCGATCCCCGGCTTG
CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGACCAGACCGAGGGT
TACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCACATTTTTCTTCGTCGGGGCACCATCG
CTGGAGCATCACCGGGGAACCTGACCGACGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGG
TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
AAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
AGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCGCCCGCCGCCCGCTCGTTT
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC
Found at i:5584865 original size:26 final size:26
Alignment explanation
Indices: 5584836--5584885 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
5584826 GTTGACTTAG
* *
5584836 GCATACGAATTTCATTCCCAGTCTCA
1 GCATACGAAGTTCATTCACAGTCTCA
*
5584862 GCATACGGAGTTCATTCACAGTCT
1 GCATACGAAGTTCATTCACAGTCT
5584886 AAGATCGGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCACAGTCTCA
Found at i:5585771 original size:26 final size:26
Alignment explanation
Indices: 5585735--5585787 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5585725 GTTGACTTAG
5585735 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5585761 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5585787 G
1 G
5585788 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5585853 original size:899 final size:893
Alignment explanation
Indices: 5583985--5587372 Score: 3905
Period size: 899 Copynumber: 3.8 Consensus size: 893
5583975 ATACGAAGTC
* * ** *
5583985 CATTCCCA-TCTAAGATCAGACCTGACCGAGGGTT-CTGGCAGTGCATGCTGGGCTTGGGCATGT
1 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GGCAGCACATGCTGGGCTCGGGCATGT
* *** ** * * *
5584048 GCTGGTGTCGCATTTTTCTTCGTTGGGGCACCATCG-TCGGAGCATCGTCGGAGAACTTGACCGG
65 GCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCT-GGAGCATCACCAGAGAACCTAACCGG
* ** * *
5584112 CGGTATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGTTGTGTGATGGGTGCT
129 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
5584177 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCACACCCCCTTAAA
194 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * *
5584242 GAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAATGTCTAAAATGGGGACACTTT
259 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTT
* * * *
5584307 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCGCATGCAAAA
324 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAC
* * *
5584372 AAAAATACAAGGATCATCTCTATCCAGTTCGGAGCCAAAACTCCTTGCGAAAAAATTTTAAAAAA
389 AAAAATACAAGGATCA-CTCTA-CCAATTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAA
* * ** * *
5584437 TCTCGAACCGTAAAAAGTTTGAAAAATTGTGAAAAATAGAAAATGGGTCGTCTTGCCTTGAAACT
451 TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
* * * *
5584502 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGTGGCATTGTCATGCAA
516 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* *
5584567 AAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCGCATCCTGTCTC
581 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCTGTCTC
** * * *
5584632 TCTGGC---CGT--CG-TAG--TGCCCGCCCT--TCGTTTCATC-AGTTGGCTTAGGCATACGGA
646 TCTGGCTGGCGTAGCGCCCGCCCGCCCGCCCTGCTCATTTCGTCGA-TTGGCTTAGGCATACGGA
** * * **
5584686 GTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGCTGTGGTAGTAGGATCGACAGCACATAGA
710 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGA
* * * ** *
5584751 GTGGGACACGACCAATCCCCGGCTTGCGCATCCCACCCCTCTAGCCGGTTGAGCGCCCGTACGCT
775 G-GGGACACGATCGATCCCCGGCTTGCGCAT-CCACCCCTCTGGCCGACTGAGCGCCCGCACGCT
* * *
5584816 CGTTTCGTGAGTTGACTTAGGCATACGAATTTCATTCCCAGTCTCAGCATACGGAGTT
838 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-AGCATA-GGAGTT
* *** * *
5584874 CATTCACAGTCTAAGATCGGATTGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTG
1 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * ** * *
5584939 CTGCTGTCGCATTTTTCTTCGTCGGGGC-CCTATTGCTGGAGCATCACCA-AGGAACCTAACCGA
66 CTGGTGCCGCATTTTTCTTCACCGGGGCACC-ATCGCTGGAGCATCACCAGA-GAACCTAACCGG
* *
5585002 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-GTTACGCACATGTTGTGCGATGGGTGC
129 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTG-TGCGCACATGATGTGCGATGGGTGC
* * *
5585066 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACTCTCTTAA
193 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
5585131 AGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACATTT
258 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTT
*
5585196 TTTTCAAATGGTCACAAAGT-TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAA
323 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAA
*
5585260 CAAAAATACAAGGATCACGTCTACCAATTTGGGGCCAAAACTCCTTCCTAAAAAATTTTAAAAAA
388 CAAAAATACAAGGATCAC-TCTACCAATTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAA
* * * *
5585325 TCCCGAACGGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCAATGAAACT
451 TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
* * * *
5585390 TCACATGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCTTTGGCACGTAG
516 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * *
5585455 AAATATGAAGATGTGCCTAAACCCACCTACCA-CATATCGATCCACGGCTTACGCATCCTGTCTC
581 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCTGTCTC
5585519 TCTGGCTGGCGTAGCGCCCGCCCGCCCGCCCCCTGCTCATTTCGTC-AGTTGGCTTAGGCATACG
646 TCTGGCTGGCGTAGCGCCCGCCCGCCCG--CCCTGCTCATTTCGTCGA-TTGGCTTAGGCATACG
* * * *
5585583 AAGTTCATTACCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGGCAGCTCGCA
708 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGACAGCACGCA
* * * * *
5585648 GAGGGAGACTCGGTCGATCCCCGGTTTGTGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACG
773 GAGGG-GACACGATCGATCCCCGGCTTGCGCATCC-ACCCCTCTGGCCGACTGAGCGCCCGCACG
*
5585713 CTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
836 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-AGCATA-GGAGTT
*
5585773 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTG
1 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * ** * *
5585838 CTGGTGCCACATTTTTCTTCACCGAGGCACCATCGCCAGAGCATCGA-CGGAGAACCTAACGGGC
66 CTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCTGGAGCATC-ACCAGAGAACCTAACCGGC
*
5585902 GGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGGTGGGTGCT
130 GGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
5585966 GGTACTTGGCCCTTATATTGGCCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAA
194 GGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
5586031 AAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTT
258 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTT
5586096 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA
323 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT-TG--TG----
5586161 CAAAAATACAAGGACGATGTCTACCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
380 C----ATAC-----C-A-----A-CAAAAATACAAGGATCAC-TCTACCAA-TTTGGGGCCAAAA
* ** **
5586226 CGCCTTTCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGA
427 CTCC-TTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
* *
5586291 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATT-TATGAATTTACAAG
491 AAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * * *
5586355 CCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGGCTAAACCCACCAACCACCCTATCG
556 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* *
5586420 ATCCACGGCTTGCACATCCTGCCTCTCTGG-TCGGTGTAGAGCCCGCCCGCCCGCCCGCCC-GCT
621 ATCCACGGCTTGCACATCCTGTCTCTCTGGCT-GGCGT--AG--CGCCCGCCCGCCCGCCCTGCT
* * * * *
5586483 CATTTTGTCGATTGGCTTAGGCATACTGAGTTGATTCCCAGTCTAAGATCGGACCGGACCGAGGG
681 CATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
* * *
5586548 -T-T-GC--------C-ACAGCACGCAAAGGGGTACCCGATCGATCCCCAGCTTGCGCATTCCAC
746 TTGTGGCAGTAGGATCGACAGCACGCAGAGGGG-ACACGATCGATCCCCGGCTTGCGCA-TCCAC
* * * *
5586601 CCCTCTGGTCGACTGAGCGCCCACACGCTCATTTCATGGGTTGAC-T-----TA--G-G-----T
809 CCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
5586652 ----G--TA-C---GGAGTT
874 CCCAGTCTAGCATAGGAGTT
* * * *
5586662 CATTCCCAGTCTAAGATCGGACTAGATCGAGGGTTGTGGCAGCACATGCTAGGCTCGGGCATGTG
1 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * * * *
5586727 CTGGTGCTGCATTTTTCTTCACC-GGG-------G-T--ACCATCACCGGAGAACCTGACTGGTG
66 CTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCTGGAGCATCACCAGAGAACCTAACCGGCG
* * * *
5586781 GTATTGGGGTTCCGGCGATCGGTGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCAGG
131 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
5586846 TACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
196 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
** *
5586911 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTTATTAAAGTGTTTGAAATGGGGACATTTTTT
261 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTT
* *
5586976 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTT-TGCATGCCAATA
326 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATACCAACA
** *
5587040 AAAGCACAAGG---A-TC-A-C--------G-------T--TT--TAAAAATTTTAAAAAATCCC
390 AAAATACAAGGATCACTCTACCAATTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCCC
* *
5587080 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCTTCTCGCCATGAAACTTCAC
455 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAC
** * * ** *
5587145 GTGAAGAATTAAGGGACCATTGTATGAATTCACAAACCATAAATTTGGCATTGGCACACAGAAAT
520 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
* * *
5587210 ATGAAGATGTACCTAAACCCACTTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTG
585 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCTGTCTCTCTG
* * * * *
5587275 GCTGACGTAGTGCCCACCCGCCCGCAC-GCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCA
650 GCTGGCGTAGCGCCCGCCCGCCCGCCCTGCTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCA
* *
5587339 ATCCCAATCTAAGATCAGACCAGACCGAGGGTTG
715 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
5587373 CGGCCACACA
Statistics
Matches: 2196, Mismatches: 233, Indels: 205
0.83 0.09 0.08
Matches are distributed among these distances:
822 74 0.03
823 1 0.00
824 2 0.00
825 96 0.04
826 99 0.05
827 3 0.00
837 1 0.00
846 1 0.00
847 1 0.00
848 2 0.00
850 1 0.00
853 10 0.00
854 1 0.00
859 1 0.00
860 1 0.00
865 3 0.00
869 1 0.00
873 2 0.00
876 2 0.00
877 156 0.07
878 90 0.04
879 7 0.00
881 1 0.00
887 35 0.02
888 186 0.08
889 159 0.07
890 292 0.13
891 2 0.00
892 2 0.00
893 2 0.00
894 1 0.00
895 6 0.00
897 5 0.00
898 12 0.01
899 357 0.16
900 125 0.06
901 27 0.01
902 6 0.00
903 2 0.00
905 2 0.00
906 1 0.00
907 1 0.00
909 3 0.00
913 4 0.00
914 2 0.00
915 73 0.03
916 4 0.00
918 1 0.00
919 1 0.00
924 3 0.00
925 96 0.04
926 149 0.07
927 61 0.03
928 6 0.00
930 14 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
CTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCTGGAGCATCACCAGAGAACCTAACCGGCG
GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAA
AAATACAAGGATCACTCTACCAATTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCCCG
AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCTGTCTCTCTGG
CTGGCGTAGCGCCCGCCCGCCCGCCCTGCTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGAGGGGAC
ACGATCGATCCCCGGCTTGCGCATCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGCATAGGAGTT
Found at i:5586192 original size:24 final size:24
Alignment explanation
Indices: 5586161--5586211 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 24
5586151 TGCATGCCAA
*
5586161 CAAAAATACAAGGA-CGATGTCTAC
1 CAAAAATACAAGGATC-ACGTCTAC
5586185 CAAAAATACAAGGATCACGTCTAC
1 CAAAAATACAAGGATCACGTCTAC
5586209 CAA
1 CAA
5586212 GTTTGGGGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 24 0.96
25 1 0.04
ACGTcount: A:0.47, C:0.24, G:0.14, T:0.16
Consensus pattern (24 bp):
CAAAAATACAAGGATCACGTCTAC
Found at i:5589103 original size:26 final size:26
Alignment explanation
Indices: 5589067--5589119 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5589057 GTAGACTTAG
*
5589067 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5589093 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5589119 G
1 G
5589120 ATCGAAACAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5589980 original size:26 final size:26
Alignment explanation
Indices: 5589943--5589995 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
5589933 GTTGACTTAG
5589943 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5589969 GCATATCG-AGTTCATTCCCAGTCTAA
1 GCATA-CGAAGTTCATTCCCAGTCTAA
5589995 G
1 G
5589996 ATCAGTCCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5590870 original size:26 final size:26
Alignment explanation
Indices: 5590840--5590892 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5590830 GTTGACTTAG
5590840 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5590866 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5590892 G
1 G
5590893 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5591781 original size:26 final size:26
Alignment explanation
Indices: 5591745--5591797 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5591735 GTTGAATTAG
*
5591745 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
*
5591771 GCATACCGAGTTCATTCCCAGTTTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
5591797 G
1 G
5591798 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:5592676 original size:26 final size:26
Alignment explanation
Indices: 5592646--5592698 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5592636 GTTGACTTAG
5592646 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
5592672 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5592698 G
1 G
5592699 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5592835 original size:901 final size:899
Alignment explanation
Indices: 5589566--5599319 Score: 11743
Period size: 897 Copynumber: 11.0 Consensus size: 899
5589556 TCGAACCATA
*
5589566 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGCGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
5589631 ATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGGTGTGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * * *
5589696 ACCCTATCGATCCACAGCTTGCGCATCCCATCCCTCTAGCCGGAGTAATGCCCGCCCGCCCACCC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGCTC
* * * * * *
5589761 ACTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCATAGTCTAAGATCGGACCGGACCAA
196 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGA
* * * * * ** * * **
5589826 GGGTTGTGGCAACAGGATCGGTAGCACGTAGTGGGGGACCCGGCCGATCCTCGGGTTATGCATCC
261 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
* * * * * *
5589891 CGCCCCTGTGGTCAGCTGAGCACCCGCACGCTCGTTTCATTGGTTGACTTAGGCATACGAAGTTC
326 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
* * * *
5589956 ATTCCCAGTCTAAGCATATC-GAGTTCATTCCCAGTCTAAGATCAGTCCGGACCGAGGGTTACGG
391 ATTCCCAGTCTAAGCATA-CGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGG
* *
5590020 CAGCACATGCTGGGCTCGAGCACGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGG
455 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGG
* * *
5590085 AGCATCGTCGGAGAACCTGACCGACGGCATT--GGTTTCGATGATCGGGGGCGACGGTGGGGGGG
520 AGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG-G-C--AGGGGGGG
*
5590148 TGTGCGCACATGATGTGCGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
581 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
5590213 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGAAGCC
646 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
5590278 ATTAAAGTGTCTGATATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
711 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
5590343 TTAGCTGAATGTTTTTATGCATGCCAACAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCA
776 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * *
5590408 AAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACTGTAAAAAGTTTCAAAAATCGTG
841 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
* *
5590467 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * *
5590532 AGTTACAAGCCATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
5590597 ACCCTATCGATACACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGT-A-G--TGCCTGCCCGCTC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGCTC
* * * *
5590658 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGGATCGA
196 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGA
* * * *
5590723 GGGTTGCAGCAGTAGGATCGGTAGCACGCAGAGGGTGACCCGATCGATCCCCGGCTTGCGCATCC
261 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
* * ** *
5590788 CGTCCCTCTGGCCGGCTGAGCGCCCGCACACTTATTTCATGGGTTGACTTAGGCATACAGAGTTC
326 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
*
5590853 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-AGACCGAGGGTTGTGG
391 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGG
* * *
5590917 CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGG
455 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGG
** * * * * *
5590982 AGCATCACCGGAGAACCTGACCGGCAGCATTGGGGTTCCAACAATGGGGGGGCCAGGGGGTGGTG
520 AGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-CAGGGGG-GGTG
* * * *
5591047 TGCACACACGATGTGCGATCGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
583 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * * * *
5591112 ACATCGAGAACTCAGACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCAG
648 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
5591177 TAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
713 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * *
5591242 AGCTGAAGTTTTTTGTGCATACCAA-AAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCTAA
778 AGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * **
5591306 AACTCCTTTCGAAAAAATTTTTAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTG
842 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
* *
5591364 AAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA-CA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
5591428 ACTTTACAAGCCCTAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTAC
66 A-TTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * **
5591493 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGATGTAGTGCTCGCCCGCCCGCC
130 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG--G-CGTAAT-GCCCGCCCGCC
* * * * * *
5591558 CGCCCGCTTGTTTTGTCGGGTGGCTTAGGCAAACGGAGTTCATTGCC-AGTCTAAGATTAGACCA
191 CGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCTAGTCTAAGATCAGACCA
* ** * * * * **
5591622 GATCGAGGGTTATGGCAGCAAGATTGGCAGGATGCAGAGGGGGACCC-AGTCGATCCCCAACTTG
255 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTG
** * * *** *
5591686 CGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGGACG-TGTGTTTTGGGGGTTGAATTAGGCATA
319 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT-CGTTTCATGGGTTGACTTAGGCATA
* * ** * *
5591750 CGGAGTTCATTCCCAGTCTAAGCATACCGAGTTCATTCCCAGTTTAAGATTAGACCGGACCAAGG
383 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGG
* * **
5591815 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACTG
448 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * * * *
5591880 TCGCCGGAGCATCATCGGAGAACCTGACC-AGCAGCATTAGGGTTCC-AGCGATCGGGGGGTAAG
513 TCGTCGGAGCATCGTCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGA-CGATCGGGGGG-CAG
* * *
5591943 GGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCTTATCC
575 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
5592008 CTCATCAAACCTCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCA
640 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
5592073 GTAGCCATTAAAGTGTCTGAAATCGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
705 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* ** * * * *
5592138 GAGTTTTTAGCT-AATTTTTTTTTTTGCGCGCCAACAAAAATACAAGGATGATGACTACCAAGGT
770 GAGTTTTTAGCTGAA--TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * *
5592202 TGGGGCCAAAAATCCTACCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAATTTTCAAAAATCA
833 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
5592267 TG
898 TG
* *
5592269 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTCAAGGGACCATTTTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
5592334 ATTTACAAGCCATTAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
5592399 A-CCTGATCGATCCATGGCTTGCGCATCCCGTCTCTTTGGACGGCATAATGCCCGCCCGCCCGCT
131 ACCCT-ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGCT
* *
5592463 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAGGATCAGATCAGACCG
195 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCG
* * * * * * * * * *
5592528 AGGGTTACGGTAGTAGGATCAGTAGCACGCAGCGAGGGACCCGGTCGATCCCTGGCTTGCGTATC
260 AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATC
* * *
5592593 CCGTCCCTCTGGCTGGATGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
325 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
* * *
5592658 CATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAAGGTTGCGG
390 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGG
* * * * * * *
5592723 AAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTTGTTGGGGCACCATCGTCGA
455 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGG
*
5592788 AGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGTTC-GGGGGGGTG
520 AGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG--CAGGGGGGGTG
* * **
5592852 TGCGTACATGATGTGCGATGGGTGCTGGTACTTGTCCCTTATATTTTCCCCCTATCCCTCATCAA
583 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
5592917 ACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACCGGTTTGCTGCCAGTAGCCAT
648 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
5592982 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACAATTCGAGTTTTT
713 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * * *
5593047 AGCTTAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCCACCGAGTTTGGTGCTAAA
778 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * * ** *
5593112 ACCCCTTCCGAAAAAATTTTAGAAAATCTCAAACCGTAAAAAGTTTTGAAAATCATG
843 ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
* * *
5593169 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACAATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
5593234 ATTTACAAGCCATAAAAATGGCATTGGCA-GTCAGAAATATGAAGATGTGCCTAAACCCACCTAC
66 ATTTACAAGCCATAAAAATGGCATTGGCACGT-AGAAATATGAAGATGTGCCTAAACCCACCTAC
* ** *
5593298 CACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCTACGT-A-G--TGCCCGCCCGCT
130 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGCT
* * *
5593359 ---T-GTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCG
195 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCG
* * * * * *
5593420 AGGGTTGCCGTAGCAGGATTGGCAGCATGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATC
260 AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATC
* * * *
5593485 CCACCCCTCTCGCCGGCTGAGCGTCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTT
325 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
* * ** * *
5593550 CATTCCCAGTCTAAGCTTATGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCAAGGGTTGCGG
390 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGG
* *
5593615 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCATCGG
455 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGG
* * * * * * *
5593680 AGCATCGCCGGAGAACCTGATCGACGGCATTGGGGTTCCGGCAATAGGGGGCCAGGGGGTGGAGT
520 AGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCAGGGGG-GGTGT
* * *
5593745 GCACACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAA
584 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * *
5593810 CCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCGTT
649 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * * *
5593875 AAAGTGTCTAAAATAGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTTGAGTTTTTA
714 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * **
5593940 GCTCAATTTTTTTGTTCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGTGAAAA
779 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
*
5594005 CTCCTTCCGAAAAAATTTTAAAAAATCCCTAACCGT-AAAAGTTTCAAAAATCGTG
844 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
** *
5594060 AAAAATAGAAAACGAGTCACCTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * *
5594125 ATTTACAAGCCATAAAAATGGCATTGGCATC-CAGAAATATGAAGATGTGCCAAAACCCAACTAT
66 ATTTACAAGCCATAAAAATGGCATTGGCA-CGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * * ***
5594189 CACCCTATCGATCCACGGCTGGCGCATCTCGCCTCTCTGGCCGGCGTAGTGCTCG-CCTATC-CT
130 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGCT
** * ** * *
5594252 --CTCGCATCATCGAATGGCTTAGGCATACGGAGTTCATT-CTCAGTCTAAGATCGGACC-GAAG
195 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCT-AGTCTAAGATCAGACCAG-AC
* * * * *
5594313 CAAAGGTTGCGGTAGCAGGATCGGCAGCACACAGAGGGGGACTCGATCGATCCCCGGCTTGCGCA
258 CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCA
* * *
5594378 TCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAG
323 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
5594443 TTCATTCCCAGTC----C--A---AG---------A-TC--AGAT-----CGAACCGAGGGTTGC
388 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGC
* * * * **
5594482 AGCAGTACATGCTAGCCTCATGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC
453 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC
** * * * * * * *
5594547 GGAGCATCACCGAAGAACCTGACCGGCGGTATTGGGGTTCAGGCGATCGAAGGGGCCGGGGGGGA
518 GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCAGGGGGGG-
* ** * ** *
5594612 TGGGCGCACATGATGTGTAATGGATGCTGGTACTTGGCCCTTATGCTGGTCCCCTATCCCTCATC
581 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * * * *
5594677 AAACCTTTGAGAACTCACAAACCCCGTACAGAGCATTTGAGA-TTTACAGGTTTTGCGGTCCCGT
646 AAACC-TCGAGAACTCAC-ACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTGCTG-CCAGT
* **
5594741 AGCCATTTAAAGTGTCTGAAATGGGGACACTTTTTTTTCAAATTGTCACAAAAAATTGTACACTT
707 AGCCA-TTAAAGTGTCTGAAATGGGGACAC--TTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
5594806 CGAGTTTTTAGCTGAATTTTTTTGCGCCATTTGCCAAAAAAAATACAAGGAT-ATTGTCTACCAA
769 CGAGTTTTTAGCTGAATTTTTTTGTG-CA--TGCCAACAAAAATACAAGGATCA-CGTCTACCAA
** *
5594870 GTTT-GGGCCAAAACTCCTTCCG-AAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCGAAAA
830 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
*
5594933 TCATG
895 TCGTG
* * * * *
5594938 -AAAGTAGAAAACGA-TTGTCATGCCATGAAACTTCACGTGAGGGCTTAAGGGACCATTGTATGG
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
5595001 ATTTACAAGCCATAAAAAT-GCATTGGCACGTTAGAATTATGAAGATGTGGCCTAAACCCACCTA
66 ATTTACAAGCCATAAAAATGGCATTGGCACG-TAGAAATATGAAGATGT-GCCTAAACCCACCTA
* * * * *
5595065 CCCACCCTATCGATCGA-AGCTTAC-CAT-CCGTCTCTCTGG-CGACGT-A-----G--TG--C-
129 -CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCCG
* * * * **
5595115 C-CGCTCGTTTCGTCAGTTGGCGTAGGCATAC-GAGTCCATT-C-AGTGTAAGATTGGACCAGAC
193 CTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGAC
* * * * *
5595176 CGA-GTTTGTGAGCAGCAGGATC-GCAGCACGCAGA--GGGACCCAATCGATCCCCGACTTGTGC
258 CGAGGGTTGCG-GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
* * * * *
5595237 ATCCCACCCCTCTAGCCGACTGAG-GCCCGCACGCTCG-TTC--GTGTT-ACTT-GGCATACGAA
322 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
* * *
5595296 GTGCATTCACAGTTCTAAG-AT-C---G---A----C---C----A--GGA-C-TA---AGGGTT
387 GTTCATTCCCAG-TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTT
* ** * *
5595335 ACGG-A-CACATGC-GGGCTTAGGCATGGTGCT-GTG-CGTATTTTTCTTCGTACGGGGCCCCAT
451 GCGGCAGCACATGCTGGGCTCGGGCAT-GTGCTGGTGCCGCATTTTTCTTCGT-CGGGGCACCAT
* * *
5595395 C-TTGGAGCTTCGTCGGA-AA-CTG-CCGCACGGCATTGGGGTTCCGGCGATCGAGGGGGC----
514 CGTCGGAGCATCGTCGGAGAACCTGACCG-ACGGCATTGGGGTTCCGACGATCG-GGGGGCAGGG
* * *
5595452 GGGATTTGC-CACATCAT-TGCGATGGGTGCTGGTACTTGGCCCCTTATATTGGCCCCCTATCCC
577 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG-CCCTTATATTGGCCCCCTATCCC
* * *
5595515 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGTCAA
641 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
5595580 TAGTCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCG
706 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * * *
5595645 AGTTTTTAGCTGAATTTTTTTGTGTATGCCAAAAAAAAAACAAGGATCACATCTACCCAGTTTGG
771 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * *
5595710 GGGCAAAACTCTTTTCAAAAAAATTTGAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
836 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
* * **
5595774 AAAAATAGAAATCGAGTCGTCTTGCCATGAAACTTCACGTG-AGGCATAAGGGACCGCTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
5595838 ATTCACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * *
5595903 ACCCTACCGATCCACGGCTTGTGCATCCCGTCGCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCG--C-CC-GCCC
* * * * * * * * **
5595968 GCCCGCTCGATTCATTGGTTGGCTTAGGCATACTGAGTTCATTCCCAATATAAGATC-GAACTGG
192 GCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAG-ACCAG
* * *
5596032 ACCGAGGTTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-CAGATCCCCGGCTTGC
256 ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGC
** * * * *
5596096 GCATCCCTTCCCTTTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATAGGTTCACTTAGGCATACG
320 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
* *
5596161 GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGAAT-GGACCCG-ACCGAGG
385 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG-ATCGGA-CCGAACCGAGG
** * ** **
5596224 GTTGCAACAGCACATGCTAGGCAAGGGCATGTGCTGGTATCGCATTTTTCTTCGTCGGGGCACCA
448 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * *
5596289 TCGTCGGAG-ATC-T---TG-A-CTG---G-CGGTATTGGGGATCCAGA-GATCGGGGGG-ATCG
513 TCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCC-GACGATCGGGGGGCA--G
* *
5596341 AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCC
575 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
5596406 CTCATCAAACCTTGAGAACTCACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCA
640 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
5596471 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTC
705 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * * *
5596536 GAGTTTTTAGCTGACTTTTTTTATGCACGCCAAAAAAAATACAAGGATCACGTCTACCATGTTTG
770 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * *
5596601 GGGCAAAAAATCCTTCCGAAAAAATTTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG
835 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
* *
5596666 AAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
5596731 ATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCAGCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
** * * *
5596796 ACTTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGTCGTAGTGCCCGCCCGCCCGCCC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGCTC
* * * * **
5596861 GTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGA-TAGGATTG
196 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCA-GACCG
* * * ** * * *
5596925 AGGGTTGCGGTAGTAGGATTGGCAGCTTGCAGAGGGGGACCCGACCGATCCCCGACTCGCGCATC
260 AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATC
* * * ** * * *
5596990 CCGCCCCTCTGGCCAGCTGAGCGCCCGTACACTAATTTCGTGGGTTGACTTAGGGATACGAAGTT
325 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
* ** * *
5597055 CATTCCCAGTGTAAGCATTTGGAGTTCATTCCCAATCTAAGATCGGA-TGAGACCGAGGGTTGCG
390 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCG
* * * * *
5597119 GCAGCACGTGCTGGGCTCGAGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGCCG
454 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG
* * *
5597184 GAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGTTGCCA--GGGGGTG
519 GAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGCAGGGGGGGTG
* *
5597247 TGTGCACATGGTGTGCGATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAA
583 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
5597311 ACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCAT
648 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
5597376 TAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
713 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* *
5597441 AGCTGAATTTTTTTGTGCATGCCAACAAAATTACAAGGATCATGTCTACCAAGTTTGGGGCCAAA
778 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* ** *
5597506 ACTCCTTTCGAAAACGTTTTAAAAAATCCCGAACCGTACAAAGTTTCAAAAATCGTG
843 ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
* * * *
5597563 AAAAATGGAAAACGAGTCGTCTCGCCATGAAACTTCACATGAAGGCTTAAAGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * * *
5597628 ACTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATAAT-AAGATGTGCC-AGAACCCACCAA
66 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT-ATGAAGATGTGCCTA-AACCCACCTA
* * * * *
5597691 CCACCCGATCGATCCACGGCTTGCGCATCCAGTCTCTCTGGCCGGTGTAGTGCCCGCCCG---TC
129 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGC
* * * *
5597753 -CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACT
194 TCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACC
* * * * * * *
5597817 GAGGGTTGCGGCAGCAGGATTGGTAGCACACAGAGGGGGATCCGATCAATCCCCAGCTTGCGTAT
259 GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCAT
* * * * * * ** * *
5597882 CTCGCCCTTTTGGCAGGCTGAACGCCTGCACGCTCGTTTTGTGGGTTGACTTAGGTATACGAAGT
324 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
* ** * * *
5597947 TCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCAAAGGTTGCG
389 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCG
* * * * * *
5598012 GCAGCACATGCTAGGCTCGGGCATGTGCTGGTGTCGCTTTTTTCTTCGCCGGGGCACCATCGCCA
454 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG
* * ** * *
5598077 GAGCATCATCGGAGAACCTGACCGACGGCATTAGGGTTTTGGCGAT-GGCGAGGGCCGGGGGGGT
519 GAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG-G-GGGCAGGGGGGGT
* * * * *
5598141 GTGTGCACATGATGTGTGATAGGTGCTGGAAATTGGCCCTTATATTGGCCCCCTATCCCTCATCA
582 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* ** * *
5598206 AACCTCGAGAACTCACACCCCCTAAAATTGCAATTGAGATTTTACAGGTTTGCTGTCAGTAGCCA
647 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * * *
5598271 TTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTTGGGTTTT
712 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
5598336 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTAGGGCCAA
777 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * **
5598401 CACTCTTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTG
842 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
*
5598459 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGA
1 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * *
5598524 ATTTACAAGCCGTAAAAATGGCATTGGTACGCAGAAATATGAAGATGTGCCTAAACCCACATACC
66 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
** ** * *
5598589 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTCCCCAACGTAGTGCCCGTCCGCCCGCTC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGCT-
* * * * *
5598654 GCCCGCTCGTGTCGTTGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
195 ---CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGA
* * * * * * * * *
5598719 TCAAGGGTTACGACAACAGGATCGACAGCATGCAGAGGGGGACCCGGTCGA-CCCTCGGCTTGCC
257 CCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCC-CGGCTTGCG
* * * * ** * *
5598783 CATCCCGCCCCTTTGGTCGGTTGAACGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATTCGA
321 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* * * * *
5598848 AGTTCATTCTCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGGATCGAACTGAGGGTT
386 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTT
* * * *
5598913 GCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACAATTTTCATTAC--CGGGGCACCAA
451 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-TT-CGTCGGGGCACCAT
* * * ** * * * * * *
5598976 CGCCGAAACATCCCCGGAGAACCTTACCGGCGGTATTGGGGTTCCGACGATCGGAAGAGCTGGGG
514 CGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCAGGGG
* *
5599041 GGGTGTGTGCACATGAAGTGCGATGGGTGCTGGTA-TTGGCCCTTATATTGGCCCCCTATCCCTC
578 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * *
5599105 ATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCCGCTAGTA
643 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
5599170 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
708 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
5599235 TTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGG
773 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * *
5599300 CTAAAACTCCTACTGAAAAA
838 CCAAAACTCCTTCCGAAAAA
5599320 TAGAAAACGA
Statistics
Matches: 7612, Mismatches: 1027, Indels: 426
0.84 0.11 0.05
Matches are distributed among these distances:
834 31 0.00
835 29 0.00
836 61 0.01
837 121 0.02
838 45 0.01
839 29 0.00
840 6 0.00
841 26 0.00
842 37 0.00
843 37 0.00
844 3 0.00
845 4 0.00
848 3 0.00
849 30 0.00
850 2 0.00
851 26 0.00
852 22 0.00
853 12 0.00
854 21 0.00
855 39 0.01
856 12 0.00
857 3 0.00
858 29 0.00
859 33 0.00
860 46 0.01
861 41 0.01
862 28 0.00
863 30 0.00
864 1 0.00
865 14 0.00
866 31 0.00
867 21 0.00
868 2 0.00
869 112 0.01
870 69 0.01
871 19 0.00
872 25 0.00
873 8 0.00
874 33 0.00
875 19 0.00
876 133 0.02
877 56 0.01
878 48 0.01
879 33 0.00
881 1 0.00
886 8 0.00
887 22 0.00
888 4 0.00
889 278 0.04
890 8 0.00
891 193 0.03
892 901 0.12
893 471 0.06
894 25 0.00
895 237 0.03
896 468 0.06
897 1183 0.16
898 42 0.01
899 22 0.00
900 275 0.04
901 687 0.09
902 9 0.00
903 228 0.03
904 533 0.07
905 577 0.08
906 10 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGCTC
GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGA
GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGC
AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
GCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCAGGGGGGGTGTGC
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
Found at i:5596184 original size:26 final size:26
Alignment explanation
Indices: 5596154--5596206 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5596144 GTTCACTTAG
*
5596154 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5596180 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5596206 G
1 G
5596207 AATGGACCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5598876 original size:26 final size:26
Alignment explanation
Indices: 5598840--5598892 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5598830 GTTGACTTAG
* * *
5598840 GCATTCGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
5598866 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
5598892 G
1 G
5598893 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:5601319 original size:26 final size:26
Alignment explanation
Indices: 5601290--5601342 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5601280 GTTGACTTAG
5601290 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5601316 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5601342 G
1 G
5601343 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5601767 original size:898 final size:895
Alignment explanation
Indices: 5600414--5602065 Score: 2220
Period size: 898 Copynumber: 1.8 Consensus size: 895
5600404 GTTAACCTAG
* * * *
5600414 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GA-CTGA-CGAGGGTTGCGACAGCACATGCTGGG
*
5600479 CTCGGGCATGTGCTGGTGT-GACATTTTTCTTCGTCGAGGG-ACCATCGTCGGAGCATCGTCAGA
63 CTCGGGCATGTGCTGGTGTCG-CATTTTTCTTCGTCG-GGGCACCATCGTCGGAGCATCGTCGGA
* * * *
5600542 GAACCTGACCGACGGCATTGGGGTTCCAATGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGT
126 GAACCTG--CGACGGCATTAGGGTTCCGACGATC-GGGGGGTCGGGGGGTGTGTGCACATGATGT
*** * * * *
5600607 GCGATGGGTGCTGGTACTTCTTCCTTCTATTGGCCCCCTATCTCTCACCAAACCTTGGGAACACA
188 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACACA
* * * *
5600672 CACCCCTTGAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAA
253 CACCCCCTGAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAA
* *
5600737 TGGGGACTCTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTT
317 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * **
5600802 GTGCATGCCAACAAAAATACAAGGATCACGTCTATCAACTTTGGGACCAGAACTCTTTCCAAAAA
382 GTGCATGCCAACAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
*
5600867 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
447 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
5600932 TGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
512 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
5600997 ATTGGCACACAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCAATGGCTTGC
577 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
* * * * *
5601062 GCGTCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCG-TCGCCCGCCCATTCGTTTCGTCGGTTGG
642 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCCCACTCGTTTCGTCGGTTGG
* * * ** *
5601126 CTTAGTCATACAGAGTTCATTCCCAGTGTAAGATCAGACCAGGCTGAAGGTTGCAGTAGCAGGAT
707 CTTAGGCATA-AGAGTTCATTCCCAGTCTAAGATCAGACCAGGCTCAAGGTTGCAACAGCAAGAT
* ** * * * * **
5601191 TGGCAGCATGTAGAGGGGGACCCGGTCGACCCCCGGCTTACCCATCCCGCCCCTCTGGCCTGCTG
771 CGAAAGCACGTAGAGGGGGACCCAGCCGACCCCCGACTTACCCATCCCGCCCCTCTGGCAGGCTG
* * * *
5601256 AGC-GCCCGTACGTTCGTTTAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 AGCAGCCC-CACGCTCGTTTAGTGGGTTAACCTAGGCATACGGAGTTCATTCCCAGTCTAA
*
5601316 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACT-GA-CGAGGGTTGCGACAGCACATGCTGGG
** * * * * * * **
5601381 CTCGGGCATGTGCTGGTGTCGCCGTTTTCTTTGCCGGGGCACCAACGCCGAAACATCCCCGGAGA
63 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
5601446 ACCTG-G-CGGCATTCGGGTTCCGACGATCGGGGGAGCTGGGGGGGTGTGTGCACATGATGTGCG
128 ACCTGCGACGGCATTAGGGTTCCGACGATCGGGGG-G-TCGGGGGGTGTGTGCACATGATGTGCG
* * *
5601509 ATGGGTGCTGGTA-TTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTAAGAACTCACAC
191 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACACACAC
*
5601573 CCCCTGAAAGAGCATTTGAGATTTTATAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTGAAATGG
256 CCCCTGAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATGG
* *
5601638 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTACCTGAATTTTTTTGTG
320 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
5601703 CATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTACTGAAAAAAT
385 CATGCCAACAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
* * * * *
5601768 TTTAAAAAATTCTGAACCGCAAAAAGTTTCAAAAATCTTGAAAAGTAGAAAATGAGTCGTCTTGC
450 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * ***
5601833 CATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAATAGATAAAAATGGCATT
515 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
5601898 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCATGGCTTGCGCA
580 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCA
* ** *
5601963 TCCTGTCTCTCTGGCCGGTATAGTGCCCGCCTGCCCACCCGCCCACTCGTTTCGTCGGTTGGCTT
645 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCCCACTCGTTTCGTCGGTTGGCTT
* * * *
5602028 AGGCATATGAGTTTATTCCCAGTCTAACATCGGACCAG
710 AGGCATAAGAGTTCATTCCCAGTCTAAGATCAGACCAG
5602066 ACCGAGGGTT
Statistics
Matches: 662, Mismatches: 82, Indels: 16
0.87 0.11 0.02
Matches are distributed among these distances:
897 5 0.01
898 469 0.71
899 73 0.11
901 4 0.01
902 110 0.17
903 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGACTGACGAGGGTTGCGACAGCACATGCTGGGCTC
GGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC
TGCGACGGCATTAGGGTTCCGACGATCGGGGGGTCGGGGGGTGTGTGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACACACACCCCCT
GAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AACAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGT
CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCAT
AAGAGTTCATTCCCAGTCTAAGATCAGACCAGGCTCAAGGTTGCAACAGCAAGATCGAAAGCACG
TAGAGGGGGACCCAGCCGACCCCCGACTTACCCATCCCGCCCCTCTGGCAGGCTGAGCAGCCCCA
CGCTCGTTTAGTGGGTTAACCTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5602949 original size:26 final size:26
Alignment explanation
Indices: 5602913--5602963 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5602903 TGACTTAGGC
*
5602913 ATACGGAGTTCATTCCCAGTTTAAGG
1 ATACGGAGTTCATTCCCAGTCTAAGG
5602939 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
5602964 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGG
Found at i:5604551 original size:25 final size:26
Alignment explanation
Indices: 5604513--5604564 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
5604503 GTTGACTTAG
*
5604513 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5604539 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5604564 G
1 G
5604565 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5607703 original size:12 final size:12
Alignment explanation
Indices: 5607686--5607716 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
5607676 CCAGCGTAGT
5607686 GCCCGCCAGCCC
1 GCCCGCCAGCCC
5607698 GCCCGCCAGCCC
1 GCCCGCCAGCCC
*
5607710 GTCCGCC
1 GCCCGCC
5607717 CGTTCGTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.06, C:0.65, G:0.26, T:0.03
Consensus pattern (12 bp):
GCCCGCCAGCCC
Found at i:5607936 original size:26 final size:26
Alignment explanation
Indices: 5607900--5607952 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5607890 GTTGACTTAG
5607900 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
5607926 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5607952 G
1 G
5607953 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5611290 original size:26 final size:26
Alignment explanation
Indices: 5611254--5611306 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
5611244 GTTGACTTAG
5611254 GCATACGGAGTTCATT-TCGAGTCTAA
1 GCATACGGAGTTCATTCTC-AGTCTAA
5611280 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
5611306 G
1 G
5611307 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:5612174 original size:26 final size:26
Alignment explanation
Indices: 5612144--5612196 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5612134 GTTGACTTAG
5612144 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5612170 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5612196 G
1 G
5612197 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5612618 original size:901 final size:896
Alignment explanation
Indices: 5609495--5614350 Score: 6050
Period size: 892 Copynumber: 5.4 Consensus size: 896
5609485 ATTGGCTTAG
* * *
5609495 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGATGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
5609560 CTCGGGCTTATGCTGATGCCACATTTTTCTTCACTGGGGTACCAT------CA-C--CGGAGAAC
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATGCGGAGCATCGACGGAGAAC
* *
5609616 CTGACCGACGGTATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
131 CTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCG
* *
5609681 ATGGGTGCTGGTACTTGGCACTTATTTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
5609746 CCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
5609811 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATTTTTTTATG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * *** *
5609876 CATGCCAACAAAAATACAAGGATCATGTCTACCAATTTTAGGGTCAAAACTCCTTTTGAGAAAAT
390 CATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
* * * * * *
5609941 TTTAAGAAATCCCGCACCGTAAAAAGTTTCTAAAATCGTGAAAAAAAAAAAACGAGTCGTCCTGC
454 TTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
5610006 CATTAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** * * * * *
5610071 GGCACACAGAAATATGAAAATGTTCCTAATCCCACCTACCACCCTATCGATCCACGACTTGCGTA
583 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
5610136 TCCCGTCTCTCTGGGCAACATGGTGCCCGCCCGCCCG-CCGTCCGCTCGTTTCGTCGGTTGGCTT
648 TCCCGTCTCTCT-GGCAACGTAGTGCCC-CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
** * * *
5610200 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGATGGTTCCGACAGCAGGATCGG
711 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACTGAGGGTTGCGACAGCAGGATCGG
* * * * * *
5610265 TAACACGCAGAGGGGGACC-CAGCCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAG
775 CAGCACGCAGAGGGGGACCTGA-CCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAG
* * *
5610329 CGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCGTTCCCAGTCTAA
839 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * *
5610387 GCATACGAATTTCATTCCCAGTCTAAGATCGGACCGGGGCGAGGGATGCGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
5610452 CTCGAGCTTATGCTGATGCCACATTTTTCTTCACCGGGG-A--A--C----CATCGCCGGAGAAC
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATGCGGAGCATCGACGGAGAAC
* * * * *
5610508 CTGACCGGCGGCATTGGGGTTCTGACGATCGGTGGGGCCAGGGGGGTGTACGCACATGATGTGCG
131 CTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCG
*
5610573 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
5610638 CCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
5610703 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
5610768 CATGCCAACAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAAATCCTTCTAAAAAAATT
390 CATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* * * * *
5610833 TTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAATTGTCTAGCC
455 TTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* *
5610898 ATGAAACTTCACGTGAAGGCCTAAGGGACCATCGTATGAATTTACAAGCCATAAAAATGGCATTG
519 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
5610963 GCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGGCTTGCGCAT
584 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
** * * *
5611028 CCCGTCTCTCTGGCCGGCGTTGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGACTTA
649 CCCGTCTCTCTGG-CAACGTAGTGCCC-CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * *
5611093 GGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACAGAGGGTTGCGGATAGCAGGATCGG
712 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG-ACTGAGGGTTGC-GACAGCAGGATCGG
* * * *** * * *
5611158 CAGCACGCAGAGGGGGACCCGACCGATCCACGGCTTGCGCAACATGCCCGTCTGGTCGGCTGAGT
775 CAGCACGCAGAGGGGGACCTGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGC
* * *
5611223 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCGAGTCTAA
840 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
5611280 GCATACGGAGTTCATTCTCAGTCTAAGATC-GAACTGGACC-AGGGTTGCGGCAACAACATCCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGC-ACATGCT-
* * * * *
5611343 GGGGTGGCTCGGCCAT-TGCT-GTGCCACAATTTTCTT---C-GTG-A-C-TGCGGCACCATCGC
63 ---G-GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATGCGG-AGCATCGA
* * * * * * *
5611399 CGGA-AACCTGACCGGCGGCATTGGGCTTCCAGC-ATTGGGGGGGTCGGGTGGGGGTGTGCACAC
123 CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGG-GGGTGTGCGCACA-
* *
5611462 T-ATG-GCGACTGGGTGCTGGTAC-T-GACCTTATA-T-GCCCCC-ATCCGCTCATCAATCCAT-
186 TGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC-CTCATCAAACC-TC
*
5611519 GA-AACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAG
248 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
5611582 TATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCAAGTTTTTAGCTG
313 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
*
5611647 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCGAAACTCC
378 AATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* *
5611712 TTCCAAAAAATTTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
442 TTCCAAAAAAATTTTAAAAAATC-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
**
5611777 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTGT
506 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
**
5611842 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
571 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * *
5611907 ACGACTTGC-CATCTCGTCTCTCTGGTATACTTAGTGCCCTTCCGCCCGCCCACCCGCTCGTTTC
636 ACGGCTTGCGCATCCCGTCTCTCTGGCA-ACGTAGTGCCC-CCCGCCCGCCCGCCCGCTCGTTTC
** *
5611971 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGA
699 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACTGAGGGTTGCGA
* * * * * * *
5612036 TAGTAGGATCCGCAGCACGTAGAGGGGGTCCTGACTGATCCCCGGCTTGCGTATCCCACCCCTCT
763 CAGCAGGATCGGCAGCACGCAGAGGGGGACCTGACCGATCCCCGGCTTGCGCATCCCACCCCTCT
* * * *
5612101 GGCCGGCTAAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
828 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
5612166 CTAA
893 CTAA
* * * * *
5612170 GCATACGGAGTTCGTTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAACACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
5612235 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGTGCATCGACGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCAT-G-CGGAGCATCGACGGAGA
*
5612300 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGTGCC-GGGGGTGTGCGCACATGATGTGC
129 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
5612364 AATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
5612429 CCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
5612494 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
** *
5612559 GCACACCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCAAAAAAA
389 GCATGCCAAAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* *
5612624 TTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA-AAAACCGAGTCATCTT
453 TTTTAAAAAATCC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA-CGAGTCGTCTT
*
5612688 GCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
5612753 TTGGCATGCAGAAATATGAAGATGTGGCTAAACCCACATACCACCCTATCGATCCACGGCTTGCA
581 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
5612818 CATCCCATCTCTCTGGCCAGCGTAGTGCCCGCCAGCCCGCTCGCCCGCTCATTTCGTCAGTTGGC
646 CATCCCGTCTCTCTGG-CAACGTAGTGCCC-CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * *
5612883 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTAAGGGTTACGGCAGCAAGATC
709 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-CGACTGAGGGTTGCGACAGCAGGATC
* * * * * * * *
5612948 GGTAGCATGCATAGGGTGA-CTCGACCGATCCCTGGCTTGGGCATCCCACCCCTTTGGCCGGCTA
773 GGCAGCACGCAGAGGGGGACCT-GACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTG
* * * *
5613012 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTAAGCCATGCGGAGTTCATTCCTAGTCTAA
837 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
5613072 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
5613137 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATC-ACCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCAT-G-CGGAGCATCGA-CGGAG
* * * * *
5613201 AA-CTTATCCGACGACATCGGGGTTCCGACGATCGGGGGGGACCAGGGGGGTTGTGCGCGCATGA
128 AACCTGA-CCGACGGCATTGGGGTTCCGGCGATCGGGGGGG-CC-GGGGGG-TGTGCGCACATGA
* *
5613265 TGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGCCCCCCTATTCCCTCATCAAACCTCGAGAA
189 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA-TCCCTCATCAAACCTCGAGAA
* *
5613330 CTCACACCCCCTT-GAGAGCATTTGAG-TTTTAACAGGTTTGCTGCCAGTAGCAATTTAAAGGTG
253 CTCACACCCCCTTAAAGAGCATTTGAGATTTT-ACAGGTTTGCTGCCAGTAGCCA-TTAAA-GTG
* * *
5613393 TCTGAAATTGGGGACACTTTATTCAAATGGTCACAAAATCTTATACACTTCAAGTTTTTAGCTGA
315 TCTGAAA-TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
5613458 ATTTTTTTGTGCATGCCGAAAAAAATACAGGGATCATGTCTGCCAAGTTTGGGGCCAAAACTCCT
379 ATTTTTTTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * *
5613523 TCGAAAAAAATTTTACAAAATCCTGAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATG
443 TCCAAAAAAATTTTAAAAAATCC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
*
5613588 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
507 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
5613653 AAAATGGCATTGGCATGCAGAAATATAAAGATGAGCCTAAACCCACCTACCACCCTATTGATCCA
572 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * *** * *
5613718 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT-------GCCCGCCTGTTTGCTCATTTCAT
637 CGGCTTGCGCATCCCGTCTCTCTGG-CAACGTAGTGCCCCCCGCCCGCCCGCCCGCTCGTTTCGT
*
5613776 CGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGAACTGAGGGTTGCGACA
701 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG-ACTGAGGGTTGCGACA
* * * ** * * * * *
5613841 GCAGGATCGCCAACACGCAAAAAGGGACTTGACTGATCCTCGGCTTACGCATCCCACCCCTCTAG
765 GCAGGATCGGCAGCACGCAGAGGGGGACCTGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGG
* * ** * *
5613906 CGGGTTGAGCGCCCGTGCGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATTCCCAATCT
830 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-T-----TA--G-G--------C-A--T
5613971 AAGCATATGGAGTTCATTCCCAGTCTAA
875 -A-C----GGAGTTCATTCCCAGTCTAA
* * * *
5613999 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * *
5614064 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGAAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCAT-G-CGGAGCATCGACGGAGA
* ** * * *
5614129 ACTTGACCGGTGGCATTGGGGTTCTGGCGATC-GGGGGGCCGGGCGGTGTACGCACATGATGTGC
129 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
5614193 GATGGGTGTTGGTGCTTGGCCCTTCTATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
5614258 CCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATT
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
5614323 GGGACACTTTTTTCAAATGGTCACAAAA
324 GGGACACTTTTTTCAAATGGTCACAAAA
5614351 GGTGAAAAAT
Statistics
Matches: 3459, Mismatches: 395, Indels: 192
0.85 0.10 0.05
Matches are distributed among these distances:
885 9 0.00
886 4 0.00
887 14 0.00
889 3 0.00
890 162 0.05
891 497 0.14
892 676 0.20
893 172 0.05
894 6 0.00
895 44 0.01
896 57 0.02
897 57 0.02
898 36 0.01
899 28 0.01
900 22 0.01
901 507 0.15
902 357 0.10
903 3 0.00
905 9 0.00
906 82 0.02
907 39 0.01
908 10 0.00
909 315 0.09
910 11 0.00
918 1 0.00
919 1 0.00
920 28 0.01
921 11 0.00
922 38 0.01
923 82 0.02
924 9 0.00
925 2 0.00
926 6 0.00
927 159 0.05
928 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATGCGGAGCATCGACGGAGAAC
CTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
TAAAAAATCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCAACGTAGTGCCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCGACTGAGGGTTGCGACAGCAGGATCGGCAGCAC
GCAGAGGGGGACCTGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5613082 original size:26 final size:27
Alignment explanation
Indices: 5613041--5613098 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 27
5613031 CGTGGGTTGA
* * *
5613041 CTAAGCCATGCGGAGTTCATTCCTAGT
1 CTAAGCCATACGGAGTTCATTCCCAAT
5613068 CTAAG-CATACGGAGTTCATTCCCAAT
1 CTAAGCCATACGGAGTTCATTCCCAAT
5613094 CTAAG
1 CTAAG
5613099 ATCGGACCAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 23 0.82
27 5 0.18
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (27 bp):
CTAAGCCATACGGAGTTCATTCCCAAT
Found at i:5613982 original size:26 final size:26
Alignment explanation
Indices: 5613947--5614025 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
5613937 GTTGACTTAG
* *
5613947 GCATACGGAGTTCATTCCCAATCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
5613973 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
5613999 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
5614025 G
1 G
5614026 ATCGGACCGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:5614801 original size:26 final size:26
Alignment explanation
Indices: 5614765--5614817 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5614755 GTTGACTTAG
5614765 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5614791 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5614817 G
1 G
5614818 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5614923 original size:51 final size:51
Alignment explanation
Indices: 5614847--5614951 Score: 174
Period size: 51 Copynumber: 2.1 Consensus size: 51
5614837 TGCAATAGCA
*
5614847 CATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCAGGGCAC
1 CATGCTGGGCTCGGGCATATGCTGGTGCCACATTTTTCTTCATCAGGGCAC
** *
5614898 CATGCTGGGCTCGGGCATATGCTGGTGCCGTATTTTTCTTCATCGGGGCAC
1 CATGCTGGGCTCGGGCATATGCTGGTGCCACATTTTTCTTCATCAGGGCAC
5614949 CAT
1 CAT
5614952 CGCCGGAGCA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.13, C:0.27, G:0.30, T:0.30
Consensus pattern (51 bp):
CATGCTGGGCTCGGGCATATGCTGGTGCCACATTTTTCTTCATCAGGGCAC
Found at i:5615724 original size:26 final size:26
Alignment explanation
Indices: 5615688--5615737 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
5615678 GACTTAGGCT
5615688 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
* *
5615714 TACGGAGTTCATTCCTAGTTTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
5615738 ATCGAATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:5616618 original size:26 final size:26
Alignment explanation
Indices: 5616580--5616632 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5616570 GTTGACTTAG
*
5616580 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
5616606 GCATATGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5616632 G
1 G
5616633 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5618192 original size:15 final size:16
Alignment explanation
Indices: 5618163--5618197 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
5618153 ACCTTTTTCA
5618163 TTTTTTGCTTTTTTTT
1 TTTTTTGCTTTTTTTT
5618179 TTTTTTGCTTTTTTTT
1 TTTTTTGCTTTTTTTT
5618195 TTT
1 TTT
5618198 AAATTGATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.00, C:0.06, G:0.06, T:0.89
Consensus pattern (16 bp):
TTTTTTGCTTTTTTTT
Found at i:5618282 original size:1 final size:1
Alignment explanation
Indices: 5618276--5618319 Score: 61
Period size: 1 Copynumber: 44.0 Consensus size: 1
5618266 ATAGAGGTAA
* * *
5618276 TTTTTTTTGTTTTTTTTTATTTTTTTTTTTGTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
5618320 AAATTATCAA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:0.02, C:0.00, G:0.05, T:0.93
Consensus pattern (1 bp):
T
Found at i:5618304 original size:22 final size:21
Alignment explanation
Indices: 5618276--5618319 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 21
5618266 ATAGAGGTAA
5618276 TTTTTTTTGTTTTTTTTTATTT
1 TTTTTTTTGTTTTTTTTT-TTT
5618298 TTTTTTTTGTTTTTTTTTTTT
1 TTTTTTTTGTTTTTTTTTTTT
5618319 T
1 T
5618320 AAATTATCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.02, C:0.00, G:0.05, T:0.93
Consensus pattern (21 bp):
TTTTTTTTGTTTTTTTTTTTT
Found at i:5618371 original size:120 final size:118
Alignment explanation
Indices: 5618052--5618425 Score: 473
Period size: 122 Copynumber: 3.1 Consensus size: 118
5618042 NNNNNNNNNN
* *** * * *
5618052 TTTTTTTTTATTTTTTTTGTTTTTTTTTTA-CAAAGCTCACTTTAAACAGAGGCTCAACGACTTT
1 TTTTTTTTTGTTTTTTTT-TTTTTAAATTATCAAAGCTC-CTCTAAGCAGAGGCTCAATGACTTT
**
5618116 GGGAGAAACATAAATAAAGCTCCTCTAAATAGAGGTAACCTTTTTCATTTTTTGCTTTTT
64 --GAGAAACATAAATAAAGCTCCTCTAAATAGAGGTAA-CTTTTTTGTTTTTT--TTTTT
* *
5618176 TTTTTTTTTG-CTTTTTTTTTTTAAATTGATCAAAGCTCCTCTAAGCAGAGGGTTCAATGACTTT
1 TTTTTTTTTGTTTTTTTTTTTTTAAATT-ATCAAAGCTCCTCTAAGCAGA-GGCTCAATGACTTT
* *
5618240 GAGAAACATAAACAAAGCTCCTCTAAATAGAGGTAATTTTTTTTGTTTTTTTTTATT
64 GAGAAACATAAATAAAGCTCCTCTAAATAGAGGTAA-CTTTTTTGTTTTTTTTT-TT
5618297 TTTTTTTTTGTTTTTTTTTTTTTAAATTATCAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGA
1 TTTTTTTTTGTTTTTTTTTTTTTAAATTATCAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGA
* * *
5618362 GAAACATAAATGAAGCTCTTCTAAATAGAGGCAACTTTTTTGTTTTTTTTTGTT
66 GAAACATAAATAAAGCTCCTCTAAATAGAGGTAACTTTTTTGTTTTTTTTT-TT
5618416 TTTTATTTTT
1 TTTT-TTTTT
5618426 AAAAGCTCCT
Statistics
Matches: 222, Mismatches: 22, Indels: 16
0.85 0.08 0.06
Matches are distributed among these distances:
119 22 0.10
120 53 0.24
121 33 0.15
122 69 0.31
123 16 0.07
124 29 0.13
ACGTcount: A:0.26, C:0.13, G:0.13, T:0.48
Consensus pattern (118 bp):
TTTTTTTTTGTTTTTTTTTTTTTAAATTATCAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGA
GAAACATAAATAAAGCTCCTCTAAATAGAGGTAACTTTTTTGTTTTTTTTTTT
Found at i:5618589 original size:83 final size:83
Alignment explanation
Indices: 5618430--5618624 Score: 329
Period size: 83 Copynumber: 2.3 Consensus size: 83
5618420 ATTTTTAAAA
* *
5618430 GCTCCTCTAAACAGAGGCTCGACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCATG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCATG
5618495 ACTTTTAGAAAGTAAATT
66 ACTTTTAGAAAGTAAATT
* *
5618513 GCTCCTCTAAATAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTTTAAACAGAGGCACCAT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATTGCTCCTCTAAACAGAGGCACCAT
*
5618578 GAC-TTTGGAAAGTAAATT
65 GACTTTTAGAAAGTAAATT
5618596 GCTCCTCTAAACAGAGGCACCACGACTTT
1 GCTCCTCTAAACAGAGGCACCACGACTTT
5618625 CCCCTCTAAA
Statistics
Matches: 105, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
83 70 0.67
84 35 0.33
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (83 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCATG
ACTTTTAGAAAGTAAATT
Found at i:5618635 original size:41 final size:41
Alignment explanation
Indices: 5618430--5618624 Score: 309
Period size: 42 Copynumber: 4.7 Consensus size: 41
5618420 ATTTTTAAAA
* *
5618430 GCTCCTCTAAACAGAGGCTCGACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
* *
5618471 GCTCCTCTAAACAGAGGCACCATGACTTTTAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAGTAAATT
*
5618513 GCTCCTCTAAATAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATT
* *
5618555 GCTCCTTTAAACAGAGGCACCATGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
5618596 GCTCCTCTAAACAGAGGCACCACGACTTT
1 GCTCCTCTAAACAGAGGCACCACGACTTT
5618625 CCCCTCTAAA
Statistics
Matches: 140, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
41 64 0.46
42 76 0.54
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
Found at i:5618672 original size:41 final size:41
Alignment explanation
Indices: 5618627--5618711 Score: 118
Period size: 42 Copynumber: 2.0 Consensus size: 41
5618617 ACGACTTTCC
* * *
5618627 CCTCTAAATAGAGGACCCCACGAC-TTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGG-CACCACAACTTTGGAAAGTAAATTGCT
5618668 CCTCTAAACAGAGGCACCACAACTTTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACAAC-TTTGGAAAGTAAATTGCT
5618710 CC
1 CC
5618712 CTGACAATCA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
40 7 0.18
41 13 0.33
42 19 0.49
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (41 bp):
CCTCTAAACAGAGGCACCACAACTTTGGAAAGTAAATTGCT
Found at i:5619017 original size:43 final size:42
Alignment explanation
Indices: 5618911--5619047 Score: 136
Period size: 43 Copynumber: 3.2 Consensus size: 42
5618901 TGAAAGATCC
** * *
5618911 TCATTTGAATTTTGGAGGCTCACATCCAAAAGTT-AAAGGTTCT
1 TCATTTGAATTTTGGA-ATTCACATCCAAAAATTCAAAGCTT-T
** *
5618954 T-ATTTGGCAAACTTGGAATTCATATCCAAAAA-TCTAAAGCTTT
1 TCATTT-G-AATTTTGGAATTCACATCCAAAAATTC-AAAGCTTT
5618997 TCATTTGAATTTTGGAAATTCACATCCAAAAATTCAAAGCTTT
1 TCATTTGAATTTTGG-AATTCACATCCAAAAATTCAAAGCTTT
5619040 TCATTTGA
1 TCATTTGA
5619048 GTTCAAAGGC
Statistics
Matches: 77, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
42 11 0.14
43 47 0.61
44 19 0.25
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.36
Consensus pattern (42 bp):
TCATTTGAATTTTGGAATTCACATCCAAAAATTCAAAGCTTT
Found at i:5620411 original size:20 final size:20
Alignment explanation
Indices: 5620359--5620413 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
5620349 AATTTGAATC
*
5620359 TTTTTTTTTC-ATTTTCTCA
1 TTTTTTTTTCTTTTTTCTCA
5620378 TTTTTTTCTT-TTTTTTCTCA
1 TTTTTTT-TTCTTTTTTCTCA
5620398 TTTTTTTTTCTTTTTT
1 TTTTTTTTTCTTTTTT
5620414 TTTTCATCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
19 9 0.28
20 23 0.72
ACGTcount: A:0.05, C:0.13, G:0.00, T:0.82
Consensus pattern (20 bp):
TTTTTTTTTCTTTTTTCTCA
Found at i:5620414 original size:22 final size:22
Alignment explanation
Indices: 5620370--5620449 Score: 85
Period size: 22 Copynumber: 3.6 Consensus size: 22
5620360 TTTTTTTTCA
5620370 TTTTCTCA--TTTTTTTCTTTT
1 TTTTCTCATTTTTTTTTCTTTT
5620390 TTTTCTCATTTTTTTTTCTTTTTT
1 TTTTCTCATTTTTTTTTC--TTTT
* *
5620414 TTTTCATCATCTTTTCTTT-TTTG
1 TTTTC-TCAT-TTTTTTTTCTTTT
5620437 TTTTCTCATTTTT
1 TTTTCTCATTTTT
5620450 CATCCATTGT
Statistics
Matches: 52, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
20 8 0.15
21 4 0.08
22 12 0.23
23 8 0.15
24 9 0.17
25 4 0.08
26 7 0.13
ACGTcount: A:0.06, C:0.15, G:0.01, T:0.78
Consensus pattern (22 bp):
TTTTCTCATTTTTTTTTCTTTT
Found at i:5620445 original size:25 final size:23
Alignment explanation
Indices: 5620356--5620445 Score: 73
Period size: 22 Copynumber: 4.0 Consensus size: 23
5620346 TTCAATTTGA
5620356 ATCTTTT-TTTTTCATTTTCTCAT-
1 ATCTTTTCTTTTT--TTTTCTCATC
* *
5620379 -TTTTTTC-TTTTTTTTCTCATT
1 ATCTTTTCTTTTTTTTTCTCATC
* *
5620400 TTTTTTTCTTTTTTTTT-TCATC
1 ATCTTTTCTTTTTTTTTCTCATC
5620422 ATCTTTTCTTTTTTGTTTTCTCAT
1 ATCTTTTC-TTTTT-TTTTCTCAT
5620446 TTTTCATCCA
Statistics
Matches: 56, Mismatches: 4, Indels: 12
0.78 0.06 0.17
Matches are distributed among these distances:
20 9 0.16
22 26 0.46
23 13 0.23
24 4 0.07
25 4 0.07
ACGTcount: A:0.08, C:0.16, G:0.01, T:0.76
Consensus pattern (23 bp):
ATCTTTTCTTTTTTTTTCTCATC
Found at i:5624424 original size:57 final size:57
Alignment explanation
Indices: 5624360--5624812 Score: 604
Period size: 59 Copynumber: 7.7 Consensus size: 57
5624350 TTGTGTAGGA
*
5624360 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTTTAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTTAAGG
*
5624417 AAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTGGAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTTAAGG
* *
5624473 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT-GAAA-TTT-ATTTTTAAGG
*
5624533 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTTAAGG
* **
5624590 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCAAAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTTG-AAATTTATTTTTAAGG
*
5624649 AAAATTGATACTTTCAACTTTT-CCTCAAAAATCCCTTTGTTTTTTTTGAAAATTTATTTTTAAG
1 AAAATTGATACTTTCAACTTTTCCCT-AAAAA------T-ATTTTTTTG-AAATTTATTTTTAAG
5624713 G
57 G
* *** *
5624714 AAAATGGATACTTTCAACTTTTCCCTAAAAATATTTTTCAAAAATTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAA-TTT-ATTTTTAAGG
* *
5624773 AAGATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT
5624813 TGGAACTTTT
Statistics
Matches: 352, Mismatches: 27, Indels: 32
0.86 0.07 0.08
Matches are distributed among these distances:
56 53 0.15
57 82 0.23
58 24 0.07
59 93 0.26
60 47 0.13
65 50 0.14
66 3 0.01
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (57 bp):
AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTATTTTTAAGG
Found at i:5624842 original size:124 final size:120
Alignment explanation
Indices: 5624458--5624813 Score: 419
Period size: 124 Copynumber: 3.0 Consensus size: 120
5624448 TATTTTTGGA
* ** *
5624458 AATTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTTG
1 AATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTCAAAAATTT-
* *
5624523 ATTTTC-AAGGAAAATTGATACTTTCAACTTTTCCCTAAAAAT-A-----TTTTTTGG
64 A-TTTCAAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATCATTTGTTTTTTTTG
* **
5624574 AAATTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTT
1 -AATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTCAAAAATTT
* *
5624639 ATTTCAAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTGTTTTTTTTG
64 ATTTCAAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAAT-CATTTGTTTTTTTTG
*
5624697 AAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCTAAAAATA-TTTTTCAAAAATTT
1 --AATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATATTTTTTCAAAAA-TT
*
5624761 TGATTTTC-AAGGAAGATTGATACTTTCAACTTTTCCCCAAAAAT-ATTT-TTTTT
63 T-A-TTTCAAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATCATTTGTTTTT
5624814 GGAACTTTTG
Statistics
Matches: 214, Mismatches: 13, Indels: 20
0.87 0.05 0.08
Matches are distributed among these distances:
115 4 0.02
116 35 0.16
117 62 0.29
121 5 0.02
122 12 0.06
123 10 0.05
124 82 0.38
125 4 0.02
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (120 bp):
AATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATATTTTTTCAAAAATTTAT
TTCAAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATCATTTGTTTTTTTTG
Found at i:5624870 original size:16 final size:15
Alignment explanation
Indices: 5624850--5624912 Score: 63
Period size: 16 Copynumber: 3.9 Consensus size: 15
5624840 AATAGAATAA
5624850 TAAAAAAAATAAAAG
1 TAAAAAAAATAAAAG
* *
5624865 TGAAAATAAATAAAAA
1 T-AAAAAAAATAAAAG
*
5624881 TAAAAATAAAGAAAAG
1 TAAAAA-AAATAAAAG
5624897 TAAAACAAAAATAAAA
1 T-AAA-AAAAATAAAA
5624913 ATAAGATAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
15 5 0.13
16 21 0.55
17 10 0.26
18 2 0.05
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (15 bp):
TAAAAAAAATAAAAG
Found at i:5624881 original size:6 final size:6
Alignment explanation
Indices: 5624845--5624930 Score: 54
Period size: 6 Copynumber: 14.3 Consensus size: 6
5624835 AAGAAAATAG
* *
5624845 AATAATA AA-AAA AATAAA AGTGAA AAT--A AATAAA AATAAA AATAAA
1 AATAA-A AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
* * * *
5624891 GAAAAGTAA AACAAA AATAAA AAT-AA GATAAA GATAAA AA
1 -AATA--AA AATAAA AATAAA AATAAA AATAAA AATAAA AA
5624931 ATATTAAATA
Statistics
Matches: 64, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
4 4 0.06
5 7 0.11
6 43 0.67
7 5 0.08
8 3 0.05
9 2 0.03
ACGTcount: A:0.77, C:0.01, G:0.07, T:0.15
Consensus pattern (6 bp):
AATAAA
Found at i:5624906 original size:27 final size:28
Alignment explanation
Indices: 5624876--5624929 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
5624866 GAAAATAAAT
5624876 AAAAATAAAAATAAAGA-AAAG-TAAAAC
1 AAAAATAAAAAT-AAGATAAAGATAAAAC
5624903 AAAAATAAAAATAAGATAAAGATAAAA
1 AAAAATAAAAATAAGATAAAGATAAAA
5624930 AATATTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 4 0.16
27 16 0.64
28 5 0.20
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.13
Consensus pattern (28 bp):
AAAAATAAAAATAAGATAAAGATAAAAC
Found at i:5624921 original size:11 final size:11
Alignment explanation
Indices: 5624838--5625006 Score: 62
Period size: 12 Copynumber: 14.8 Consensus size: 11
5624828 TTATTTAAAG
*
5624838 AAAATAGAATA
1 AAAATAAAATA
*
5624849 ATAAAAAAAATA
1 A-AAATAAAATA
*
5624861 AAAGTGAAAATA
1 AAAAT-AAAATA
*
5624873 AATA-AAAATA
1 AAAATAAAATA
*
5624883 AAAAT-AAAGA
1 AAAATAAAATA
* *
5624893 AAAGTAAAACA
1 AAAATAAAATA
5624904 AAAATAAAA-A
1 AAAATAAAATA
*
5624914 TAAGATAAAGATAA
1 -AAAATAAA-AT-A
5624928 AAAATATTAAATA
1 AAAATA--AAATA
* **
5624941 AAACCTAATCTA
1 AAA-ATAAAATA
* *
5624953 ATAAATATAAGA
1 A-AAATAAAATA
5624965 ACAAATAAAATA
1 A-AAATAAAATA
5624977 AACAA-ATAAATA
1 AA-AATA-AAATA
*
5624989 AAAA-AAATTA
1 AAAATAAAATA
5624999 AAAA-AAAA
1 AAAATAAAA
5625007 AACCTGGAGC
Statistics
Matches: 118, Mismatches: 26, Indels: 29
0.68 0.15 0.17
Matches are distributed among these distances:
10 29 0.25
11 27 0.23
12 44 0.37
13 11 0.09
14 5 0.04
15 2 0.02
ACGTcount: A:0.74, C:0.04, G:0.05, T:0.18
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:5625893 original size:8 final size:8
Alignment explanation
Indices: 5625880--5625952 Score: 53
Period size: 8 Copynumber: 9.0 Consensus size: 8
5625870 ATATTATAGG
5625880 ATAAAAAA
1 ATAAAAAA
5625888 ATAAAAAA
1 ATAAAAAA
5625896 ATAATATATAA
1 ATAA-A-A-AA
* *
5625907 TTAAATAA
1 ATAAAAAA
5625915 AT--AAAA
1 ATAAAAAA
* *
5625921 ATACAATA
1 ATAAAAAA
5625929 ATAAATAAA
1 ATAAA-AAA
5625938 AT-AAAAA
1 ATAAAAAA
5625945 ATAAAAAA
1 ATAAAAAA
5625953 TATATTATTA
Statistics
Matches: 51, Mismatches: 7, Indels: 14
0.71 0.10 0.19
Matches are distributed among these distances:
6 5 0.10
7 5 0.10
8 29 0.57
9 5 0.10
10 2 0.04
11 5 0.10
ACGTcount: A:0.77, C:0.01, G:0.00, T:0.22
Consensus pattern (8 bp):
ATAAAAAA
Found at i:5625906 original size:23 final size:24
Alignment explanation
Indices: 5625880--5625945 Score: 64
Period size: 25 Copynumber: 2.7 Consensus size: 24
5625870 ATATTATAGG
5625880 ATAAAAAAATAAAAAAAT--AATA
1 ATAAAAAAATAAAAAAATACAATA
**
5625902 TATAATTAAATAAATAAAAATACAATA
1 -ATAAAAAAAT-AA-AAAAATACAATA
5625929 ATAAATAAAATAAAAAA
1 ATAAA-AAAATAAAAAA
5625946 TAAAAAATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
23 8 0.24
24 2 0.06
25 10 0.29
26 6 0.18
27 8 0.24
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.23
Consensus pattern (24 bp):
ATAAAAAAATAAAAAAATACAATA
Found at i:5625911 original size:27 final size:27
Alignment explanation
Indices: 5625828--5625972 Score: 100
Period size: 27 Copynumber: 5.2 Consensus size: 27
5625818 AAAATCAAAT
* *
5625828 AAATAAAAAAATAATAGATACTTAGAAA
1 AAATAAAAAAATAATATATAATTA-AAA
* *
5625856 AGATAATAAAAAAAATATTATAGGA-TAAAA
1 AAATAA-AAAAATAATA-TATA--ATTAAAA
*
5625886 AAATAAAAAAATAATATATAATTAAAT
1 AAATAAAAAAATAATATATAATTAAAA
* * *
5625913 AAATAAAAATACAATA-ATAAATAAAA
1 AAATAAAAAAATAATATATAATTAAAA
*
5625939 TAAA-AAATAAAA-AATATATTATTAATAA
1 -AAATAAA-AAAATAATATATAATTAA-AA
5625967 TAAATA
1 -AAATA
5625973 CATAGGATAT
Statistics
Matches: 93, Mismatches: 14, Indels: 19
0.74 0.11 0.15
Matches are distributed among these distances:
26 16 0.17
27 30 0.32
28 15 0.16
29 19 0.20
30 11 0.12
31 2 0.02
ACGTcount: A:0.70, C:0.01, G:0.03, T:0.26
Consensus pattern (27 bp):
AAATAAAAAAATAATATATAATTAAAA
Found at i:5625931 original size:30 final size:30
Alignment explanation
Indices: 5625883--5625951 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
5625873 TTATAGGATA
* *
5625883 AAAAAAT-AAAA-A-AATAATATAT-AATT
1 AAAAAATAAAAATACAATAATAAATAAAAT
5625909 AAATAAATAAAAATACAATAATAAATAAAAT
1 AAA-AAATAAAAATACAATAATAAATAAAAT
5625940 AAAAAATAAAAA
1 AAAAAATAAAAA
5625952 ATATATTATT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
26 3 0.08
27 4 0.11
28 4 0.11
29 1 0.03
30 18 0.50
31 6 0.17
ACGTcount: A:0.77, C:0.01, G:0.00, T:0.22
Consensus pattern (30 bp):
AAAAAATAAAAATACAATAATAAATAAAAT
Found at i:5625954 original size:23 final size:23
Alignment explanation
Indices: 5625880--5625954 Score: 66
Period size: 23 Copynumber: 3.1 Consensus size: 23
5625870 ATATTATAGG
5625880 ATAAA-AAAATAAAAAAATAATATATA
1 ATAAATAAAAT-AAAAAATAA-A-A-A
*
5625906 ATTAAAT-AAAT-AAAAATACAATA
1 A-TAAATAAAATAAAAAATA-AAAA
5625929 ATAAATAAAATAAAAAATAAAAA
1 ATAAATAAAATAAAAAATAAAAA
5625952 ATA
1 ATA
5625955 TATTATTAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 13
0.74 0.04 0.23
Matches are distributed among these distances:
22 5 0.12
23 12 0.29
24 7 0.17
25 8 0.19
26 2 0.05
27 8 0.19
ACGTcount: A:0.76, C:0.01, G:0.00, T:0.23
Consensus pattern (23 bp):
ATAAATAAAATAAAAAATAAAAA
Found at i:5625955 original size:53 final size:53
Alignment explanation
Indices: 5625880--5626005 Score: 136
Period size: 53 Copynumber: 2.4 Consensus size: 53
5625870 ATATTATAGG
5625880 ATAAAA-AAATAAA-AAAATAATATATAATTAAATAAATAAA-A-ATACAATAATAA
1 ATAAAATAAA-AAATAAAATAATATATAATT-AAT-AATAAATACATACAAT-ATAA
* ** *
5625933 ATAAAATAAAAAATAAAA-AATATATTATTAATAATAAATACATAGGATATAC
1 ATAAAATAAAAAATAAAATAATATATAATTAATAATAAATACATACAATATAA
*
5625985 ATAAAATATAAAATAAAATAA
1 ATAAAATAAAAAATAAAATAA
5626006 AAATAAAAAT
Statistics
Matches: 63, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
51 6 0.10
52 24 0.38
53 26 0.41
54 7 0.11
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (53 bp):
ATAAAATAAAAAATAAAATAATATATAATTAATAATAAATACATACAATATAA
Found at i:5625972 original size:7 final size:7
Alignment explanation
Indices: 5625894--5625972 Score: 52
Period size: 7 Copynumber: 10.7 Consensus size: 7
5625884 AAAAATAAAA
5625894 AAATAAT
1 AAATAAT
*
5625901 ATATAATT
1 AAATAA-T
5625909 AAATAAAT
1 AAAT-AAT
5625917 AAA-AAT
1 AAATAAT
5625923 ACAATAAT
1 A-AATAAT
5625931 AAATAAAAT
1 AAAT--AAT
*
5625940 AAAAAAT
1 AAATAAT
*
5625947 AAAAAAT
1 AAATAAT
* *
5625954 ATATTAT
1 AAATAAT
*
5625961 TAATAAT
1 AAATAAT
5625968 AAATA
1 AAATA
5625973 CATAGGATAT
Statistics
Matches: 56, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
6 4 0.07
7 32 0.57
8 12 0.21
9 8 0.14
ACGTcount: A:0.70, C:0.01, G:0.00, T:0.29
Consensus pattern (7 bp):
AAATAAT
Found at i:5626015 original size:12 final size:12
Alignment explanation
Indices: 5625985--5626013 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
5625975 TAGGATATAC
5625985 ATAAAATATAAA
1 ATAAAATATAAA
5625997 ATAAAATA-AAA
1 ATAAAATATAAA
5626008 ATAAAA
1 ATAAAA
5626014 ATGACAAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 9 0.53
12 8 0.47
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (12 bp):
ATAAAATATAAA
Found at i:5627072 original size:159 final size:159
Alignment explanation
Indices: 5626840--5627182 Score: 474
Period size: 159 Copynumber: 2.2 Consensus size: 159
5626830 TGGCTGAGGT
** * *
5626840 ATACGGAGTTCATTCCCTA-TCTAAGATCAGACTGGATTGAGGGTTGCGGTAGCAGGATCGGCAG
1 ATACGGAGTTCATT-CCTAGTCTAAGATCAGACTGGATCAAGGGTTGCAGCAGCAGGATCGGCAG
*** * * * * *
5626904 CATGTAGAGGGGGACCTGACCGATCCTCGACTTGCGCATCCCGCCCCTCTGGTCGGTTGAACGCC
65 CACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCAGCCCCTCTGGCCGGCTGAACGCC
5626969 CGCACGCTCGTTTCGCGAGTTGACATAGGC
130 CGCACGCTCGTTTCGCGAGTTGACATAGGC
** *
5626999 ATACGGAGTTCATTCCTAGTCTAAGATTGGAGC-GGATCAAGGGTTGCAGCAGCAGGATCGGTAG
1 ATACGGAGTTCATTCCTAGTCTAAGATCAGA-CTGGATCAAGGGTTGCAGCAGCAGGATCGGCAG
*
5627063 CACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCAGCCCCTCTGGCCGGCTGAGCGCC
65 CACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCAGCCCCTCTGGCCGGCTGAACGCC
* * *
5627128 CGCACGCTCGTTTCGTGGGTTGACTTAGGC
130 CGCACGCTCGTTTCGCGAGTTGACATAGGC
*
5627158 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCTAGTCTAAG
5627183 CATACGGAGT
Statistics
Matches: 162, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
158 4 0.02
159 157 0.97
160 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (159 bp):
ATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGATCAAGGGTTGCAGCAGCAGGATCGGCAGC
ACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCAGCCCCTCTGGCCGGCTGAACGCCC
GCACGCTCGTTTCGCGAGTTGACATAGGC
Found at i:5627192 original size:26 final size:26
Alignment explanation
Indices: 5627156--5627208 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5627146 GTTGACTTAG
*
5627156 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
5627182 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
5627208 G
1 G
5627209 ATAGGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:5628996 original size:26 final size:26
Alignment explanation
Indices: 5628918--5628985 Score: 127
Period size: 26 Copynumber: 2.6 Consensus size: 26
5628908 GTTGACTTAG
*
5628918 GCATACAGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5628944 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5628970 GCATACAGAGTTCATT
1 GCATACAGAGTTCATT
5628986 GTCGGTCTAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5632537 original size:26 final size:26
Alignment explanation
Indices: 5632507--5632557 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5632497 GTTGACTTAG
* *
5632507 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5632533 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
5632558 GGATCGAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5633451 original size:26 final size:26
Alignment explanation
Indices: 5633415--5633467 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5633405 GTTGACTTAG
*
5633415 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5633441 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5633467 G
1 G
5633468 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5633900 original size:906 final size:883
Alignment explanation
Indices: 5627230--5636826 Score: 10844
Period size: 904 Copynumber: 10.8 Consensus size: 883
5627220 CTGAGGGCTA
* * * * *
5627230 CGGCAGCACATACTGGGCTCGAGCAAGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGT
1 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
* * * *
5627295 CGGAGCATCGTCCGAGAACCTGACCGACGACATTTGGGTTCCGGCGATCGGGGGGGCCGAGGTGG
66 CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-CG-GG-GG
* *
5627360 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCCCCCAT
128 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCAT
* *
5627425 CAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
192 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGC
*
5627490 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTT
257 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * * * * *
5627555 TTTAGCTAAATTTTTTTTTACGTGCCAAAAAAAATACAAGGATCAGGTCTACCATGTTTGGGGCC
322 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT-ACGTCTACCAAGTTTGGGGCC
* * ** **
5627620 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAATGTTTTGAAAATAATGAAAAA
386 AAAACTCCTTCCGAAAAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
*
5627685 TAAAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
450 TAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
** * * *
5627750 CAAGCCATAAAAATGGCATTGGCGTGCAGAAATATGAAGATGTGCCTAAATCCACCTACCATCCT
515 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * *
5627815 ATCGATCCACGGCTTACGCATCTCGTCTCTCTGGCCGTCGTAATGCCCGCCCGCCCGCT-----C
580 ATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCTGACGTAGTGCCCGCCCGCCCGCTCCGCCC
* *** ** *
5627875 G----TTTCGTCGGTTGGCTTAGGCATATAAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGA
645 GCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGA
* ** * * **
5627936 GGGTTGTAGTAGCAGGATCGGCAGCACGTAGAGAGGGACCCTTTCGATCCCC-GACTTGCGCATC
710 AGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCAATCGATCCCCAG-CTTGCGCATC
* * * * * ** ** * *
5628000 TCGCCCCTCTGGCCGGCGGAGCACCCGCACGCTTATTTTATGGGTTGACTCATGCATACGGAGTT
774 CCACCCCTCTGGCCTGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * *
5628065 CATTCCCAATCTAAG-ATA-G-GAT-T--G---GACTGAGGGCTA
839 CATTCCCAGTCTAAGCATACGAGATCTCAGACCGACCGAGGGTTG
* * * *
5628101 CTGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGC
1 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
* * **
5628166 CGGAGCATCGTCAGAGAACCTGACCGACAGCATTGGGGTTCCGACGAT-GGGGGACCGGACGGGG
66 CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGG--GGGG
* * *
5628230 TGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATG
129 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATC
* * *
5628295 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCC
193 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCC
5628360 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
258 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * *
5628425 TTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATATAACGATCACGTCTTCCAAGTTTGGGGCCA
323 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT-ACGTCTACCAAGTTTGGGGCCA
* * * * * *
5628490 CAA-TGCCTTTCAAAAAAAGTTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAA
387 AAACT-CCTTCCGAAAAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
* *
5628554 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTCAAGGGACCATTGTATGAATTTA
450 TAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
5628619 CAAGCCATAAAAATGGCATTGGAACAC-T-GTAATATGAAGATGTGCCTAAACCCACCTACCACT
515 CAAGCCATAAAAATGGCATTGG--CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * **
5628682 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGTA--TAGTGCCCGTCCGCCTAC-CC
578 CTATCGATCCACGGCTTGCGCATCCCGTCTCTATGG-CTG-ACGTAGTGCCCGCCCGCCCGCTCC
* * * *
5628744 GCCCGTTCGTTTCATCTGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGA
641 GCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA
* * * * * * *
5628809 CTG-A----G-GGTTGC-GG-T----AGCACGTAGAGGGGGACCCGACCAATCCCCGGCTTGCGC
706 CCGAAGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCAATCGATCCCCAGCTTGCGC
* * * * * * *
5628862 ATCGCGCCCCTCTGGCCGGCTGAGCGCCCGCAAGCTCATTTCGTTGGTTGACTTAGGCATACAGA
771 ATCCCACCCCTCTGGCCTGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * ** * **
5628927 GTTCGTTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTG
836 GTTCATTCCCAGTCTAAGCATAC-GAG---A-TCTCAG----A-CCGACCGAG--GGTTG
* * * ** * *
5628987 TCGGTCTAAGATCAGACCGGATAG-AGGGTTGCGATAGCACATGCTGG-GCTCAGGCA-TGTGC-
1 -CGG-C--AG--C--A-C--AT-GCTGGGCT-CG--GGCATGTGCTGGTGC-C--GCATTTTTCT
* ** * * * * * *
5629048 TGGT-GCCGCATTTTTCTTCATCGGGGTACTATCGTCGAAGAACCTGACCGACGGTATTGGGGTT
48 TCGTCGGGGCA----CCATCGTCGGAG--C-ATCGTCGGAGAACCTGACCGACGGCATTGGGGTT
* * * *
5629112 CCGACGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCAATAGGTGCTGGTACCTGG--CT
106 CCGACGATCGGGGGGGC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
5629175 TATATTGGCCCCCTATCTCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
170 TATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
5629240 TTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
234 TTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
5629305 CAAAATCTTGTGCACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGA
299 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * *
5629370 TCACGTCTACCAAGTTTGGGGCCGAAACGCCTTCCGAAAAAATTTTAAAAAATCCCAAATCG-AG
364 T-ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CCGAACCGCA-
** * *
5629434 AAAAGTTTTGAAAATCGTGAAGAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
426 AAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * ** * *
5629499 TTAAGGGAGCATTGTATGAATTTACAAGCCATACAAATGTAATTGGCATGCAGAAATATGAAGAT
491 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGAT
* * * * *
5629564 GTGCCCAATCCCACCTACCACCCTATCGATACACGGCTTGCGCATCCCGTCTTTCTGG-TCGACG
556 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCT-GACG
* ** * *
5629628 TAGTGCCCGCCCGCCTGC-CCGTTCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTC
620 TAGTGCCCGCCCGCCCGCTCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
** * * * * * *
5629692 CCAGTCTAAGATTGGACCGGAACGATGGTT-CTGGTAGCAAGATCGGCAGCATGCAAAGGGGGAC
685 CCAGTCTAAGATCAGACTGGACCGAAGGTTGC-GGTAGCAGGATCGGCAGCACGCAGAGGGGGAC
* ** * * *
5629756 CCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCG
749 CCAATCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCTGCTGAGCGCCCGCACGCTCGTTTCG
* *
5629821 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTATGGAGTTCATTCCCAGTCTAA
814 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-CGAG---A-T--C--TC---
*
5629886 GATCGGACCGGACCGAGAGTTG
867 -A---GACC-GACCGAGGGTTG
* * *
5629908 TGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCATCGT
1 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
* * * * * * *
5629973 CGAAGCATCATCGGAGAACCTGACTGGCGGCATTGGGGTTCCAAAGATCGGGGGGTCGGGGGGCG
66 CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC-GGGGG-G
* ** *
5630038 TGTGTGCACATGATGTGCGATGGGTATTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
129 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATC
* * *
5630103 AACCCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCC
193 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCC
5630168 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
258 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * ** **
5630233 TTAGCCGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCATATCTACCAAGTTCAGGGCCA
323 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT-ACGTCTACCAAGTTTGGGGCCA
* *
5630298 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCGTGAAAAAT
387 AAACTCCTTCCGAAAAAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
* * * * *
5630363 AGAAAACGAGTCGTCTTGGCATGAAACTTCACGTGAAGGCTTAACGGAGCACTGTATGAATTTAC
451 AAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*** * * * *
5630428 AAGCCATAAAAATGGCATTGGCATACAGAAATATGAATATGTGCCCAATCCTACCTACCACCCTA
516 AAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * * *
5630493 TTGATCCACGGCTTGCGCTTCCTGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGC-CCACCCG
581 TCGATCCACGGCTTGCGCATCCCGTCTCTATGGCTGACGTAGTGCCCGCCCGCCCGCTCCGCCCG
* * * * * * * ** *
5630557 CTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTTCCAATCAAAGATCAGACCGGAAAGAT
646 CTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAA
* * * * * * *
5630622 GGTTGCAGCAGCAAGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCT
711 GGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCAATCGATCCCCAGCTTGCGCATCCC
* * ** *
5630687 GCCCCTCTGGCC-GACTGAGCGCCCGCATGCTAATTTCATGGGTTGACTTAGGCATACGGAGTTC
776 ACCCCTCTGGCCTG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* *
5630751 ATTTCCAGTCTAAGCGTACAGAGTTAATTCTCAATCTAAGATCGGACCAGACCGAGGGTTG
840 ATTCCCAGTCTAAGCATAC-GAG---A---TC--TC----A---GACC-GACCGAGGGTTG
* * * **
5630812 TGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCATGGCACCATCGT
1 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
* * * *
5630877 CGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGA-GATCGGGGGGTCAGGGGGC
66 CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCC-GACGATCGGGGGGGC-GGGGG-
5630941 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCAT
128 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCAT
* *
5631006 CAAACCTCGTGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
192 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGC
*
5631071 AATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
257 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * ** * *
5631136 TTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACAACTACTATGTTTGGGGCC
322 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT-ACGTCTACCAAGTTTGGGGCC
* * *
5631201 AAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAA
386 AAAACTCCTTCCGAAAAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
*
5631266 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
450 TAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
5631331 CAAGCCACAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
515 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * *
5631396 ATCAATCCACGGCTTGCGCATCCCGTCTCTTTGG-TCGACGTAGTGCCCGCACGCCCG-TGCGCT
580 ATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCT-GACGTAGTGCCCGCCCGCCCGCTCCGCC
** * * * *
5631459 CGCTTGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCG
644 CGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCG
* * * * * *
5631524 AGGGTTGCGGTAGCAGGATTGGCAGAGCATGCAGAGGGGGACCCAACCAATCCCCGGCTTGCGCA
709 AAGGTTGCGGTAGCAGGATCGGC--AGCACGCAGAGGGGGACCCAATCGATCCCCAGCTTGCGCA
** * * * * * * * *
5631589 TCCTTCCCCTCTGGTCGGCCGAGCGCCTGCACACTCGTTTCATGGGTTCACTTAGGCTTACGGAG
772 TCCCACCCCTCTGGCCTGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
5631654 TTCATTCCCAGTCTAAG-AT-CG-GA-C-C--A--GACCGAGGGTTG
837 TTCATTCCCAGTCTAAGCATACGAGATCTCAGACCGACCGAGGGTTG
* * ** * *
5631692 CGACATCACATGCTGGGCTCAAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCATCGT
1 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
* * ** * * ** * *
5631757 CGAAGTATCACCGGAGAACCTGACTGGCGGCATTGGGGTTCTAACGATCGGGGCGACGGGGGGGT
66 CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC-GGGGGGT
* * * * *
5631822 GTGCACGCATGATGTGTGTTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCA
130 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCA
* * *
5631887 AACCTCAAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
194 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCA
* * * *
5631952 CTAAAGTGTCAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGATTTTT
259 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* *
5632017 TAGCT-AATTTTTTTTGTGCATGCCAAAAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCA
324 TAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGAT-ACGTCTACCAAGTTTGGGGCCA
* * * ** *
5632081 AAACTCCATCCGAAAAAATTTTTAAAAATCTCAAACCATAAAAAGTTTCAAAAATCATGAAAAAT
387 AAACTCCTTCCGAAAAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
* *
5632146 AGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTACA-GGACCATTGTATGAATTTA
451 AAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA-AGGGACCATTGTATGAATTTA
* * * *
5632210 CAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACTCT
515 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
5632275 ATCGATCCATGGCTTGCGCGTCCCGTCTCTCTGG-TCGGCGTAGT----GCCCGCCCGCT-----
580 ATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCT-GACGTAGTGCCCGCCCGCCCGCTCCGCC
* * * *
5632330 CG----TTTCATTGGTTGGCTTAGGCATACAGAGTTCATTCCCTGTCTAAGATCAAACTGGACCG
644 CGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCG
* * * * * * *
5632391 AGGGTTGTGGTAGCAGGATTGGTAGCATGCAGAGGGGGACCTAACCGATCCCCAGCTTGCGCATC
709 AAGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCAATCGATCCCCAGCTTGCGCATC
* * *
5632456 CCACCCCTCTGG-CTGGCTGAGTG-CTG-ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
774 CCACCCCTCTGGCCT-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
*
5632518 TCATTCTCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAGGATCGAACTAGACCGAGGGTTG
838 TCATTCCCAGTCTAAGCATAC-GAG---A-T--C--TC-A-GA-C---C--GACCGAGGGTTG
** * *
5632581 CGATAGCACATGCTGGGCTGGGGCATGTGCTGGTGCCGGATTTTTCTTCGTCGGGGCACCATCGT
1 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
* * * * * *
5632646 TGGAGCATCGCCGAAGAACCTGACCGACGGCATTGGGGTTCTGGCAATCGGGGGGGCCGGGGGGG
66 CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-C-GGGGGG
* * * * ***
5632711 TGTGCACACATGATGTACGATGGGTGCTGTTGCACAGCCCTTATATTGGCCCCTTATCCCTCATC
129 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATC
* * * *
5632776 AAACCTCAAGAACTCACACGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCACTAGCC
193 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCC
* * * * * * * *
5632841 AATAAAGTGTTTAAAATAGGGACATTTTTTTGAAATGGTCACAAAATCTTGTACACTTCAAATTT
258 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
*
5632906 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAAGATTACGTCTACCAAGTTTGGGGCCA
323 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA-TACGTCTACCAAGTTTGGGGCCA
* * * * * * * *
5632971 AAACTTCTTTCGAAAAAATTTTCAAAAATCCTTAACCGTAAAAAGTTTCCAAAATCATTAAAAAT
387 AAACTCCTTCCGAAAAAATTTTAAAAAATCC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
* *
5633036 AGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
451 AAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
5633101 AAGCCATAAAAATGGCATTGGTAGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
516 AAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* *
5633166 TCGATCCATGGCTTGCGCATCTCGTCTCTATGGCTGACGTAGTGCCCGCCCGCCCGCCTGCCTGC
581 TCGATCCACGGCTTGCGCATCCCGTCTCTATGGCTGACGTAGTGCCCGCCCGCCCG-CT-CC-GC
* * *
5633231 CCGCTCATTTCATCGGTTGGCTTATGCATACGGAGTTCATCCCCAGTCTAAGATCAGACTGGACT
643 CCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACC
* * * * * *
5633296 GAAGGTTGCGGCAGCGGGATCGGCAGCACGCAAAGGGGGACCCGATCGATCCCCAGTTTGCACAT
708 GAAGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCAATCGATCCCCAGCTTGCGCAT
*** *
5633361 CTTGCCCCTCTGGCCTACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
773 CCCACCCCTCTGGCCTGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
5633426 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTG
838 TCATTCCCAGTCTAAGCATAC-GAG---A-T--C--TC--AGA-C----C-GACCGAGGGTTG
* * *
5633489 CGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCAATTTTCTTCGTCGGGGCACCATCGT
1 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
* * * * * *
5633554 CGGAGCATCGCCGGAGAACCTGACCGACAGCATTTGGGTTCCCACGGTCGGGGGGGCTGGGGGTG
66 CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTG
* * *
5633619 TGCGCACATGATGTCCGATGGGCGTTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAA
131 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAA
* * * * * *
5633684 ACTCGAGAACTCACACCCTCTTAAAGAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCGA
196 CCTCGAGAACTCACACCCCCTT-AA-AGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCA
*
5633749 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTT
259 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
5633814 TAGCTG-ATTTTTTTATGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAA
324 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT-ACGTCTACCAAGTTTGGGGCCAA
* * *
5633878 AACTCCTTCCGAAAAAATTTTCAAAAATCCCCAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
388 AACTCCTTCCGAAAAAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA
*
5633943 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
452 AAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * * *
5634008 AGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCGAT
517 AGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * *
5634073 CTATCCACGGCTTGCGCATCCCGTCTCTCTGG-TCGACGTAGCGCCCGCTCGCCCG-TCCGCCCG
582 CGATCCACGGCTTGCGCATCCCGTCTCTATGGCT-GACGTAGTGCCCGCCCGCCCGCTCCGCCCG
* *
5634136 CTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAATCTAAGATCAGACTGGACC-AA
646 CTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAA
* * ** * *
5634200 GGGTTGCGGTAGCAGCATCGGTAGCACGCAGAGGGGGAGACAATCGATCTCC-GACTTGTGCATC
711 -GGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCAATCGATCCCCAG-CTTGCGCATC
* * *
5634264 CCA--CCTCTGG-CTGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTAACTTAGGCATATGGAGT
774 CCACCCCTCTGGCCT-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
5634326 TCATTCCCAGTCTAAG-AT-CG-GA-C-CAGACC-A---AGGGTTG
838 TCATTCCCAGTCTAAGCATACGAGATCTCAGACCGACCGAGGGTTG
* * **
5634363 TGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATTAT
1 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
* * * *
5634428 CGAAGCATCATCGGAGAACCTGACCGACGGTATTAGGGTTCCGACGATC-GGGGGGCTGGGGGGT
66 CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC-GGGGGGT
* *
5634492 GTG-GCACATGATGTGCGATGGGTGCTGGTACTTGGCTCATATATTGGGCCCCTATCCCTCATCA
130 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCTATCCCTCATCA
*
5634556 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGGGATTTTGCAGGTTTGCTGCCAGTAGCCA
194 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCA
*
5634621 TTAAATTGTCTGAAATGGGGGA-ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
259 TTAAAGTGTCTGAAAT-GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * **
5634685 TTAGCTGAATTTTTTTATGCGTGCCAACAAAAATACAAGGATACGCCTACCAAGTTTGCAGCCAA
323 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATACGTCTACCAAGTTTGGGGCCAA
* * * *
5634750 AACTCCTTCTG--AAAAGTTTAAAAAATACCGAATCGCAAAAAGTTTCGAAAATCGTGAAAAA-A
388 AACTCCTTCCGAAAAAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA
* * * * *
5634812 AAAAACGAGTCATCTTTCCATGAAACTTCGCATGAAGGCTTAAAGGACCATTGTATGAATTTACA
452 AAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
5634877 ATCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTAT
517 AGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * ** * *
5634942 CGATCCACGGCTTACGCATCCCGTCTCTCTGG-TCGGCGTAAAGCCTGCCCGCCCGCT-CACCCG
582 CGATCCACGGCTTGCGCATCCCGTCTCTATGGCT-GACGTAGTGCCCGCCCGCCCGCTCCGCCCG
* * * * * ** ** *
5635005 TTCATTTCGTCAGTTGGCTTAGGCATACGAAGTTTATTCCCAGTCTAAGATTGGACCAGACCGAG
646 CTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAA
*** * * * * * * *
5635070 GGTTGCCACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCAATCCTCGGCTTGCTCATTCT
711 GGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCAATCGATCCCCAGCTTGCGCATCCC
* * * *
5635135 GCCCCTCTGGCC-GACTGAGCGGCCACACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTC
776 ACCCCTCTGGCCTG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
5635199 ATTCCCAGTCTAAG-AT-CG-GA-CTCA-ACCGA---A-GGTTG
840 ATTCCCAGTCTAAGCATACGAGATCTCAGACCGACCGAGGGTTG
** * * *
5635234 CGGCAGCACATGCTGGGCTTTGGCATGTGCTGGTGCCCCATTTTTCTTCGTCGGGGCACCATTGC
1 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
* * * * * * *
5635299 CGAAGCATCATCAGAGAACCTGACTGACAGCTTTGGGGTTCCGACGATCGGAGGGGCCGGGGGGG
66 CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGG--GCGGGGG
* *
5635364 GTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGGCCCCTATCCCTCAT
128 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCTATCCCTCAT
*
5635429 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGGGATTTTGCAGGTTTGCTGCCAGTAGC
192 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGC
*
5635494 CATTAAATTGTCTGAAATGGGGGA-ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
257 CATTAAAGTGTCTGAAAT-GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* **
5635558 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATACGCCTACCAAGTTTGCAGCC
321 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATACGTCTACCAAGTTTGGGGCC
* * * *
5635623 AAAACTCCTTCTG--AAAAGTTTAAAAAATACCGAATCGCAAAAAGTTTCGAAAATCGTGAAAAA
386 AAAACTCCTTCCGAAAAAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
* * *
5635686 -AAAAAACGAGTCGTCTTGCCATGAAACTTCGCATGAAGGCTTAAAGGACCATTGTATGAATTTA
450 TAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
5635750 CAATCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCT
515 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * * *
5635815 ATCGATCCACAGCTTGCGCATCCCGTCTCTATGGCCGACGTGGTGCCCACTCGCACGC-CCGCCT
580 ATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCTGACGTAGTGCCCGCCCGCCCGCTCCGCCC
** * * * ** *
5635879 GCTTGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATC-A
645 GCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGA
* * * * * **
5635943 AGGGTTACAGTAGTAGGATTGGCAGCACGTAGAGGGGGACCCAGCCGATCCCCAGCTTGCGCATC
710 A-GGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCAATCGATCCCCAGCTTGCGCATC
* * * *
5636008 CCACCCCTCTGGCCGGCTGAGCGCCTGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTT
774 CCACCCCTCTGGCCTGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* *
5636073 CATTCCCAGTCTAAG-AT-C-CGA-CT---A--GACCGAGGGTTA
839 CATTCCCAGTCTAAGCATACGAGATCTCAGACCGACCGAGGGTTG
* * * * **
5636109 CGACAGCACATGCTGGGCTAGGGCATGTGCTGGTGCCGTATTTTT-TTCATCGGGGCACCATCAC
1 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
* * *
5636173 CGGAGCATCGTCGGAGAACCTGACCGACGGAATTGGGGTTCCGACGATTGGGGTGGCCGGGGGGT
66 CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGGCGGGGGGT
*
5636238 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCA
130 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCA
* * * * *
5636303 AACCTCAAGAAGTCACACCCCCTTAAAGAGTATTTGAGATTTTGTAGGTTTGCTGCTAGTAGCCA
194 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCA
* * *
5636368 TTGAAGTGTCTGAAAGGGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTT
259 TTAAAGTGTCTGAAA-TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* **
5636433 TTAGCTGAATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTAATAAGTTT-GGGCC
323 TTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGAT-ACGTCTACCAAGTTTGGGGCC
* *
5636497 TAAAACTCCTTTCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
386 -AAAACTCCTTCCGAAAAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* * * * * *
5636562 ATATAAAACGAGTCATCTTGCCATTAAAGTTCACGTGATGGCTCAAGGGACCATTGTATGAATTT
449 ATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
5636627 ACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
514 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *** * * *
5636692 TATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGTTTAGAGCCCGTCCGCCTGC-CCGCC
579 TATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCTGACGTAGTGCCCGCCCGCCCGCTCCGCC
* * *
5636756 CGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGAT-AGGACCGGACC
644 CGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACTGGACC
*
5636820 GAGGGTT
708 GAAGGTT
5636827 ACGACAGCAC
Statistics
Matches: 7624, Mismatches: 872, Indels: 453
0.85 0.10 0.05
Matches are distributed among these distances:
863 48 0.01
864 6 0.00
865 158 0.02
866 5 0.00
867 73 0.01
868 3 0.00
869 734 0.10
870 58 0.01
871 295 0.04
872 278 0.04
873 142 0.02
874 265 0.03
875 739 0.10
876 4 0.00
877 98 0.01
878 228 0.03
879 456 0.06
880 127 0.02
881 1 0.00
883 2 0.00
884 8 0.00
886 2 0.00
887 2 0.00
889 120 0.02
890 447 0.06
891 4 0.00
892 2 0.00
893 1 0.00
894 10 0.00
895 4 0.00
896 1 0.00
897 7 0.00
898 4 0.00
899 11 0.00
900 81 0.01
901 56 0.01
902 152 0.02
903 18 0.00
904 1809 0.24
905 42 0.01
906 632 0.08
907 126 0.02
908 200 0.03
909 7 0.00
910 11 0.00
911 1 0.00
912 2 0.00
913 1 0.00
915 1 0.00
916 123 0.02
917 2 0.00
918 1 0.00
919 1 0.00
920 3 0.00
921 3 0.00
922 1 0.00
923 6 0.00
924 1 0.00
927 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (883 bp):
CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTG
TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAA
CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCATT
AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATACGTCTACCAAGTTTGGGGCCAAAAC
TCCTTCCGAAAAAATTTTAAAAAATCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAA
ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGCATCCCGTCTCTATGGCTGACGTAGTGCCCGCCCGCCCGCTCCGCCCGCTCAT
TTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAAGGTTG
CGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCAATCGATCCCCAGCTTGCGCATCCCACCCC
TCTGGCCTGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
AGTCTAAGCATACGAGATCTCAGACCGACCGAGGGTTG
Found at i:5637750 original size:26 final size:26
Alignment explanation
Indices: 5637714--5637766 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5637704 GTTGACTTAG
*
5637714 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
5637740 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
5637766 G
1 G
5637767 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:5638651 original size:26 final size:26
Alignment explanation
Indices: 5638615--5638667 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5638605 GTTGACTTAG
5638615 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5638641 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5638667 G
1 G
5638668 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5638752 original size:901 final size:900
Alignment explanation
Indices: 5636953--5639184 Score: 3167
Period size: 901 Copynumber: 2.5 Consensus size: 900
5636943 GCACCATCGT
* * *
5636953 CGGAGCATCGTCGGAGAACCTGACCAACGGCTTTGGGGTTTCGGCGATC--GGGG-GGCTGGGGG
1 CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCAGGGGGCGGC-GGGGG
* * * *
5637015 TGTGCACACATGATGTGCAATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATA
65 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
5637080 AAACCTCGAGAACTGACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCCA-TAGC
130 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CCAGTAGC
*
5637144 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-TT
194 CATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * ** *
5637208 TTTTAGCTGAA-TTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTCAGGGC
259 TTTT-GTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGA
* * *
5637272 CAAAATGCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGATAAAAGTTTCAAAAATCATGAAAA
323 AAAAAT--CTTCCGAAAAAATTTTAAAAAATCCCGAACC-ATAAAAATTTCAAAAATCATGAAAA
* *
5637337 ATAGGAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTT
385 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
5637402 ACAAGCCATAAAAATGCCATTGGCATGCAGAAATATGAAGATGTGCCCAAACCAACCTACCACCC
450 ACAAGCCATAAAAATGCCATTGGCACGCAGAAATATGAAGATGTGCCCAAACCAACCTACCACCC
* * *
5637467 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCCC
515 TATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCC
* * * * * *
5637532 GCTCGTTTCATCGGTTAGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGATTAGAATGA
580 GCTCATTTCATAGGTTAGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGAACGA
* * * * * * * *
5637597 GGGCTGTGGTAGTAGGATCGACAGCACGCAGAGGGGGACCCGGCTGATCCTCGGCTTGCACATCC
645 GGGCTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCCTACACATCC
** * * *
5637662 CGCCCCTCTGGCCGACTGAGTGCCCGTATGCTCATTTCGTGTGTTGACTTAGGCATACGGAGTTC
710 CGCCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
*
5637727 ATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTGCGGC
775 ATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTACGGC
* * * *
5637792 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCTTCGGGGCACCATCAC
840 ACCACATGCTGGGCTCGGGCATGTACTGGTGCCGTATTTTTCTTCATCGGGGAACCATCAC
** * *
5637853 CGGAGCATCGTCGGAGAACCTGACCGACGAAATTAGGGTTCCGACGATCAGGGGGTCGGCGGGGG
1 CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCAGGGGG-CGGCGGGGG
* * * * *
5637918 TGTTCGCACATGATGTACGATGGCTGCTGGCACTTGGCCCTTATATTGGCCTCCTATCCCTCATC
65 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
5637983 AAACCTCGAGAACTCACACCTCCGTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
130 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
5638048 ATTAAAGTGTCTAAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
195 ATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
*
5638113 TTTGTTGAATTTTTTTGTGCACT-CCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTA
260 TTTGTTGAATTTTTTTGTGCA-TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-A
* * * *
5638177 AAAAATCTTCCGAAAAAATTTTAACAAATCTCGAACCACAAAAATTTCAAAAATCGTGAAAAATA
323 AAAAATCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAATTTCAAAAATCATGAAAAATA
* * * *
5638242 AAAAACGAGTCGTCATACCATGAAACTTCACGTGAAGGCTTAAGGGACCTTTGTATGAATTTACA
388 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * * * * *
5638307 AGCCATAAAAATGGCATTGGCACGCTGAAATATGAAGATGTGTCTAAACCCACCTATCACCCTAT
453 AGCCATAAAAATGCCATTGGCACGCAGAAATATGAAGATGTGCCCAAACCAACCTACCACCCTAT
* *
5638372 CGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCCCATCCGTT
518 CGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCCGCT
* * *
5638436 CATTTCGTAGGTTGGGTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGAACGAGGG
583 CATTTCATAGGTTAGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGAACGAGGG
* ** * * ** *
5638501 CTGCGGCAGCAAGATTGGTAGCACGTAGAGGGGGACCTGGCCGATCCCCGGCCTACGGA-CCTCT
648 CTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCCTACACATCC-CG
* * ** *
5638565 TCCCTCTGGCTGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
712 CCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
5638630 TCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC-GAACTGGACCGAGGGTTACGGTA
777 TCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAG-ACCGGACCGAGGGTTACGGCA
5638694 CCACATGCTGGGCTCGGGCATGTACTGGTGCCGTATTTTTCTTCATCGGGGAACCATCAC
841 CCACATGCTGGGCTCGGGCATGTACTGGTGCCGTATTTTTCTTCATCGGGGAACCATCAC
*
5638754 CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGAGGTGGCCGG-GGGG
1 CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATC-AGG-GGGCGGCGGGG
5638818 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
64 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
5638883 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGC
129 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
5638948 TATTAAAGTGTCTGAAATAGAGACA-TTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAG-
194 CATTAAAGTGTCTGAAATGGAGACACTTTTT-TCAAATGGTCACAAAATCTTGTACACTTCGAGT
** * * * *
5639011 TTTTAATTGAATTTTTTTGTGCATGCCAGCAAAAATGCAAAGATCACATCTACCAAGTTTGGGCC
258 TTTTTGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG--
* *** * ** ** *
5639076 CAAAACCCCTTCCGAAAAAATTTTAAAAAACCCCGAACTGTAAAAAGTTTGGAAAATCATGGAAA
321 GAAAAAATCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAA-TTTCAAAAATCATGAAAA
*
5639141 ATAGAAAACGAGTCGTCTTGCCATGGAACTTCACGTGAAGGCTT
385 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
5639185 GCGCGTCCCT
Statistics
Matches: 1177, Mismatches: 137, Indels: 34
0.87 0.10 0.03
Matches are distributed among these distances:
899 1 0.00
900 104 0.09
901 544 0.46
902 254 0.22
903 213 0.18
904 55 0.05
905 6 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCAGGGGGCGGCGGGGGT
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TTGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGAAAA
AATCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAATTTCAAAAATCATGAAAAATAGAA
AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
CATAAAAATGCCATTGGCACGCAGAAATATGAAGATGTGCCCAAACCAACCTACCACCCTATCGA
TCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCCGCTCAT
TTCATAGGTTAGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGAACGAGGGCTG
CGGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCCTACACATCCCGCCCC
TCTGGCCGACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
AGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTACGGCACCACA
TGCTGGGCTCGGGCATGTACTGGTGCCGTATTTTTCTTCATCGGGGAACCATCAC
Found at i:5639283 original size:26 final size:26
Alignment explanation
Indices: 5639247--5639297 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5639237 TGACTTAGCG
* *
5639247 ATACGGAGTTCATTCCTAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
5639273 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
5639298 ATTGGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:5639758 original size:614 final size:621
Alignment explanation
Indices: 5638563--5639798 Score: 1832
Period size: 614 Copynumber: 2.0 Consensus size: 621
5638553 CTACGGACCT
*
5638563 CTTCCCTCTGGCTGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
1 CTTCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * ** * *
5638628 ATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGGT
66 ATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTACGGC
** *
5638693 ACCACATGCTGGGCTCGGGCATGTACTGGTGCCGTATTTTTCTTCATCGGGGAACCATCACCGGA
131 ACCACATGCTGGGCTCAAGCATGTACTGGTGCCGCATTTTTCTT-ATC--GG----AT--CCGGA
*
5638758 GCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGAGGTGGCCGGGGGGGTGTG
187 GCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGAGGGGGCCGGGGGGGTGTG
* *
5638823 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
252 CCCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAAC
* *
5638888 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCTATTA
317 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTA
5638953 AAGTGTCTGAAATAGAGACATTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAT
382 AAGTGTCTGAAATAGAGACATTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAT
* *
5639018 TGAATTTTTTTGTGCATGCCAGCAAAAATGCAAAGATCACATCTACCAAGTTTGGGCCCAAAACC
447 TGAATTTTTTTGTGCATGCCAACAAAAATACAAAGATCACATCTACCAAGTTTGGGCCCAAAACC
* * *
5639083 CCTTCCGAAAAAATTTTAAAAAACCCCGAACTGTAAAAAGTTTGGAAAATCATGGAAAATAGAAA
512 CCTTCCGAAAAAATTTTAAAAAACCCCGAACCGTAAAAAGTTTGAAAAATCATGAAAAATAGAAA
*
5639148 ACGAGTCGTCTTGCCATGGAACTTCACGTGAAGGCTTGCGCGTCC
577 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTGCGCGTCC
*
5639193 CTTCCCTCTGG-TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA-GCGATACGGAGT
1 CTTCCCTCTGGCT-GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGC-ATACGGAGT
* * * * *
5639256 TCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCT
64 TCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTACG
* *
5639321 GCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCGCATTTTTC-T-TC-G-T-CGGAGCATCGT
129 GCACCACATGCTGGGCTCAAGCATGTACTGGTGCCGCATTTTTCTTATCGGATCCGGAGCATCGT
* *
5639381 CGGAGAACCTGACTGACGGCATTGGGG-TTCTGGCGATCG-GGGGGCCGGGGGGGTGTGCCCACA
194 CGGAGAACCTGACCGACGGCATTGGGGTTTC-GACGATCGAGGGGGCCGGGGGGGTGTGCCCACA
*
5639444 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTACCAAACCTCGAG
258 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAG
*
5639509 AACTCACA-CCCCTTAGAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGT
323 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGT
* * *
5639573 CTGAAATGGGGACACTTTTT-TCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGA-TGA
388 CTGAAATAGAGACA-TTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTA-ATTGA
* ** * *
5639636 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAG-TTGGGGCCAAAACTCCT
450 ATTTTTTTGTGCATGCCAACAAAAATACAAAGATCACATCTACCAAGTTTGGGCCCAAAACCCCT
*** * *
5639700 TCCGAAAAAATTTTAAAAAATTTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACG
515 TCCGAAAAAATTTTAAAAAACCCCGAACCGTAAAAAGTTTGAAAAATCATGAAAAATAGAAAACG
5639765 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
580 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
5639799 AAGGGACCAT
Statistics
Matches: 554, Mismatches: 46, Indels: 28
0.88 0.07 0.04
Matches are distributed among these distances:
614 201 0.36
615 151 0.27
616 45 0.08
619 1 0.00
624 1 0.00
627 2 0.00
629 4 0.01
630 149 0.27
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (621 bp):
CTTCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTACGGC
ACCACATGCTGGGCTCAAGCATGTACTGGTGCCGCATTTTTCTTATCGGATCCGGAGCATCGTCG
GAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGAGGGGGCCGGGGGGGTGTGCCCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTG
AAATAGAGACATTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAATTGAATTTTT
TTGTGCATGCCAACAAAAATACAAAGATCACATCTACCAAGTTTGGGCCCAAAACCCCTTCCGAA
AAAATTTTAAAAAACCCCGAACCGTAAAAAGTTTGAAAAATCATGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACGTGAAGGCTTGCGCGTCC
Found at i:5641828 original size:26 final size:26
Alignment explanation
Indices: 5641794--5641844 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5641784 TGACTTAGGG
5641794 ATACAGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
*
5641820 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
5641845 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:5642050 original size:26 final size:26
Alignment explanation
Indices: 5642020--5642071 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
5642010 TGACTTTGGG
5642020 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
5642046 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
5642072 TCGGACCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:5642137 original size:226 final size:226
Alignment explanation
Indices: 5641718--5642234 Score: 716
Period size: 226 Copynumber: 2.3 Consensus size: 226
5641708 GACGCCGACG
* * ** *
5641718 CGATCCGCCGACTTACGCGTCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCATTTCATGGG
1 CGATCC-CCGGCTTGCGCGTCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGG
* *
5641783 CTGACTTAGGGATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
65 TTGACTTAGGGATACAGAGTTCATTCCCAGTCTAAGAATACGGAGTTCATTCCCAGTCTAAGATC
* * * **
5641848 GGACCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGACGTGTGTTGGTGTTGCATTTTTCT
130 GGACCGGACAAAGGGTTACGACAGCACATGCTGGGCTCGGACATGTGTTGGTGCCGCATTTTTCT
* * * *
5641913 TCATCAGAGCATC-GTCGGAGAACCTGACTGGT
195 TCACCAGAGCATCACT-GGAAAACCTGACTGGC
* * * *
5641945 CGATCTCCGGCTTGTGCGTCCCGCCCCTCTGGCCAACTGAGCGCCCACACGCTCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCGTCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGT
* *
5642010 TGACTTTGGGATACGGAGTTCATTCCCAGTCTAAGAATACGGAGTTCATTCCCAGTCTAAGATCG
66 TGACTTAGGGATACAGAGTTCATTCCCAGTCTAAGAATACGGAGTTCATTCCCAGTCTAAGATCG
* * *
5642075 GACCGGACAAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGT-TCTGGTGCCGTATTTTTCT
131 GACCGGACAAAGGGTTACGACAGCACATGCTGGGCTCGGACATGTGT-TGGTGCCGCATTTTTCT
** * *
5642139 TTGCCGGAGCATCACTGGAAAACCTGACTTGC
195 TCACCAGAGCATCACTGGAAAACCTGACTGGC
*
5642171 CGATCCCCGGCTTGCGCGT-CCGCCCCTCTGGCCGACTGAGCGCCCGCATGCTCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCGTCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGT
5642235 CAGGGGGTGT
Statistics
Matches: 254, Mismatches: 34, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
225 43 0.17
226 205 0.81
227 6 0.02
ACGTcount: A:0.18, C:0.30, G:0.28, T:0.25
Consensus pattern (226 bp):
CGATCCCCGGCTTGCGCGTCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGT
TGACTTAGGGATACAGAGTTCATTCCCAGTCTAAGAATACGGAGTTCATTCCCAGTCTAAGATCG
GACCGGACAAAGGGTTACGACAGCACATGCTGGGCTCGGACATGTGTTGGTGCCGCATTTTTCTT
CACCAGAGCATCACTGGAAAACCTGACTGGC
Found at i:5644349 original size:715 final size:717
Alignment explanation
Indices: 5642912--5644395 Score: 2178
Period size: 715 Copynumber: 2.1 Consensus size: 717
5642902 TGCCTGTACT
* * * * *
5642912 CTCGATTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAG
1 CTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
* * * * * *
5642977 GGTTGCGACAGCACATGTTGGGCTCAGGCATGTGCTGGTGCAGCATTTATTTTCGTCGGGGCACC
66 GGTTGCGACAGCACATGCTGGACTCAGGCATGTGCTGGTCCAGAATTTATCTTCATCGGGGCACC
* * * * * **
5643042 ATCGTCGGAGCATCGTCGAAGAACCTGACATACAGCATTGCGGTTTCGACGATCGGGGGGGCCGG
131 ATCGCCGGAGCACCGCCGAAGAACCTGACAGACAGCATTGCGGTTCCGACGATCGGAAGGGCCGG
*
5643107 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
196 GGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
5643172 CATCAAACCTCGAGAACTGACACCCCTTAAAAAGCATTTGAGATTTTACAGGCTTGCTGCTAGTA
261 CATCAAACCTCAAGAACTCACACCCCTTAAAAAGCATTTGAGATTTTACAGGCTTGCTGCCAGTA
* *
5643237 GCCATTAAAGTTTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
326 GCCACTAAAGTTTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAG
* *
5643302 TTTTCAGCTGAATGTTTTTGAGCATGCCAACAAAAATACAAGAATCACATCTACCTAGTTTGGTG
391 TTTTCAGCTGAATGTTTTTGAGCATGCCAACAAAAATACAAGAATCACATCTACCAAGTTTGGGG
* *
5643367 CCAAAACTCATTCCAAAAAAATTTTAAAAAATATCGAACCGTAAAAAGTTTAAAAAATTATGAAA
456 CAAAAACTCATTCCAAAAAAATTTTAAAAAATATCGAACCGTAAAAAGTTTAAAAAATCATGAAA
* *
5643432 AATAAAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTT
521 AATAAAAAACGAGTCGTCCTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATT
* * *
5643497 TACAAGCCATAAAAATGGCATTGGCACTCCGAAATAGGAATATGTGCCTAAACCCACCTACCACC
586 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATAGGAAGATGTGCCTAAACCCACCTACCACC
* *
5643562 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGACCGGCGTAGTGCCCGCCCGCCCGCCCGCC
651 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGACCGACGTAGTGCCCGCCCGCCCACCCGCC
5643627 CG
716 CG
* *
5643629 CTCGTTTC-TTCGGTTGGCTTAGGCATACGGAGTTCAAT-CCAGTGTAAGATCGGACCGGACCGA
1 CTCGTTTCGTT-GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
* * *
5643692 GGGTTGTGGCAGCACATGCTGGACTCAGGCATGTGCTGGTACCATAATTT-TCTTCATC-GGGCA
65 GGGTTGCGACAGCACATGCTGGACTCAGGCATGTGCTGGT-CCAGAATTTATCTTCATCGGGGCA
* * * * **
5643755 CCATTGCCGGAGCACCGCC-AGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGAAGGGC
129 CCATCGCCGGAGCACCGCCGA-AGAACCTGACAGACAGCATTGCGGTTCCGACGATCGGAAGGGC
* *
5643819 CGGGGGGTGTGCGCACATGTTGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATC
193 CGGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
5643884 CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
258 CCTCATCAAACCTCAAGAACTCACA-CCCCTTAAAAAGCATTTGAGATTTTACAGGCTTGCTGCC
5643949 AGTAGCCACTAAAGTGTT-TGAAATGGGGACA-TTTTTTCAAATGGTCAAAAAATCTTGTACACT
322 AGTAGCCACTAAAGT-TTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACT
* * * ** * *
5644012 TTGAGTTTTTAGCTGAATTTTTTTGTTCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
386 TCGAGTTTTCAGCTGAATGTTTTTGAGCATGCCAACAAAAATACAAGAATCACATCTACCAAGTT
* * * *
5644077 TGGGGGAAAAACT-ACTTCCCAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC
451 TGGGGCAAAAACTCA-TTCCAAAAAAATTTTAAAAAATATCGAACCGTAAAAAGTTTAAAAAATC
* ** * *
5644141 GTGAAAAATTGAAAACGAGTCGTCTTGCCATGAAACTTCA-GTTAAAGGCTTAAGGGGCCATTGT
515 ATGAAAAATAAAAAACGAGTCGTCCTGCCATGAAACTTCACG-TAAAGGCTTAAGGGACCATTGT
*
5644205 ATGAATTTACAAG-CATTAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
579 ATGAATTTACAAGCCA-TAAAAATGGCATTGGCACGCAGAAATAGGAAGATGTGCCTAAACCCAC
* * *
5644269 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCTGCC
643 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGACCGACGTAGTGCCCGCCCGCC
*
5644334 CACCCGCCTG
708 CACCCGCCCG
*
5644344 CTCGTTTCGTTGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
1 CTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
5644396 AGATCGAACT
Statistics
Matches: 683, Mismatches: 74, Indels: 21
0.88 0.10 0.03
Matches are distributed among these distances:
714 5 0.01
715 496 0.73
716 143 0.21
717 39 0.06
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (717 bp):
CTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
GGTTGCGACAGCACATGCTGGACTCAGGCATGTGCTGGTCCAGAATTTATCTTCATCGGGGCACC
ATCGCCGGAGCACCGCCGAAGAACCTGACAGACAGCATTGCGGTTCCGACGATCGGAAGGGCCGG
GGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
CATCAAACCTCAAGAACTCACACCCCTTAAAAAGCATTTGAGATTTTACAGGCTTGCTGCCAGTA
GCCACTAAAGTTTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAG
TTTTCAGCTGAATGTTTTTGAGCATGCCAACAAAAATACAAGAATCACATCTACCAAGTTTGGGG
CAAAAACTCATTCCAAAAAAATTTTAAAAAATATCGAACCGTAAAAAGTTTAAAAAATCATGAAA
AATAAAAAACGAGTCGTCCTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGGCACGCAGAAATAGGAAGATGTGCCTAAACCCACCTACCACC
CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGACCGACGTAGTGCCCGCCCGCCCACCCGCC
CG
Found at i:5644557 original size:26 final size:26
Alignment explanation
Indices: 5644527--5644577 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5644517 TGACTTAGGG
*
5644527 ATACAGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTAATTCCCAGTCTAAGC
5644553 ATACAGAGTTAATTCCCAGTCTAAG
1 ATACAGAGTTAATTCCCAGTCTAAG
5644578 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTAATTCCCAGTCTAAGC
Found at i:5644938 original size:200 final size:200
Alignment explanation
Indices: 5644553--5644942 Score: 530
Period size: 200 Copynumber: 1.9 Consensus size: 200
5644543 CAGTCTAAGC
* * * * *
5644553 ATACAGAGTTAATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCATATGCTGGGCT
1 ATACAGAGTTAATTCCCAGCCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATACTGGACT
* * * * *
5644618 CGGACGTGTGCTGGTGTCGCATTTTTCTTCGTTGGAGCATCGTCGGAGAACCTGACTGGTCGATC
66 CGGACGTGTGCTGGTGTCGAATTTTTCTTCGCTCGAGCATCGTCGGAGAACCTGACGGGCCGATC
* * * * *
5644683 CCCGGCTTATGCGTCCCTCCCCTCTGGCCAGCTGAGCACCCGCACACTTGTTTCATGGGTTGACT
131 CCCGGCTTACGCATCCCACCCCTCTGGCCAACTGAGCACCCGCACACTCGTTTCATGGGTTGACT
5644748 TTGGG
196 TTGGG
* * * *
5644753 ATACGGAGTTCATTCCCAGCCTAAGATCGGACCGGACCAAGGGTTACGGTAGCACATACTGGACT
1 ATACAGAGTTAATTCCCAGCCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATACTGGACT
* *
5644818 CGGCCGTGTGCTGGTGTCGAATTTTTCTTTGCTCGAGCATCG-CTGGAGAACCTGACGGGCCGAT
66 CGGACGTGTGCTGGTGTCGAATTTTTCTTCGCTCGAGCATCGTC-GGAGAACCTGACGGGCCGAT
* * * **
5644882 CCCCGGCTTGCGCATCCCACCCCTTTGGCCAACTGAGCGCCCGCATGCTCGTTTCATGGGT
130 CCCCGGCTTACGCATCCCACCCCTCTGGCCAACTGAGCACCCGCACACTCGTTTCATGGGT
5644943 CGGGGGGGTG
Statistics
Matches: 163, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
199 1 0.01
200 162 0.99
ACGTcount: A:0.18, C:0.29, G:0.28, T:0.25
Consensus pattern (200 bp):
ATACAGAGTTAATTCCCAGCCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATACTGGACT
CGGACGTGTGCTGGTGTCGAATTTTTCTTCGCTCGAGCATCGTCGGAGAACCTGACGGGCCGATC
CCCGGCTTACGCATCCCACCCCTCTGGCCAACTGAGCACCCGCACACTCGTTTCATGGGTTGACT
TTGGG
Found at i:5645677 original size:26 final size:26
Alignment explanation
Indices: 5645641--5645693 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
5645631 GTTGACTTAG
5645641 GCATACGGAGTTCATTTCC-AGTCTAA
1 GCATACGGAGTTCA-TTCCTAGTCTAA
5645667 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
5645693 G
1 G
5645694 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 4 0.15
26 22 0.85
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:5647692 original size:715 final size:714
Alignment explanation
Indices: 5645667--5647857 Score: 3137
Period size: 712 Copynumber: 3.1 Consensus size: 714
5645657 TCCAGTCTAA
* * * *
5645667 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
5645732 CTCAAGCATGTGCTGGTGCAGCATTTATCTTCGTCGGGGCACCATCATCGGAGCATCGTCGAAGA
66 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
* ** * *
5645797 ACCTGATCGATAGCATTGCGGTTCCAAGGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTG-GGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTG
*
5645861 CGATGGGTACTGGTACATT-GCCCTTATATTGGCCCCCTATCCCTCATC-AGACCTCGAGAACTC
195 CGATGGGTGCTGGTA-ATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAG-CCTCGAGAACTC
* * *
5645924 ACA-CCCCTTAAAAAGCATTTGAGATTTTACAGGCTTCCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
5645988 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGA-ACGTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGATTC-TTT
* * *
5646052 TTGAGCATGCCAACAAAAATACAAGGATCACGTCTACCTAGTTTGGGGCCAAAACTCCTTCCAAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
** *
5646117 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTAAAAAATTATGAAAAATAGAAAACGAGTCGT
452 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGT
* * *
5646182 CTTGCCATTAAACGTCACGTGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
5646247 GCATTGGCAC-TCCGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
582 GCATTGGCACGT-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACGGCT
* * * *
5646311 TGCGCATCCCGTTTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACTCGTTTCTTCGGTTGGC
646 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCATCGGTTGAC
5646376 TTAG
711 TTAG
* * * *
5646380 GCATACGGAATTCAGT-CCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * *
5646444 CTCAGGCATGTGCTGGTACCGTAATTTTCTTCATC-GGGCACCATTGCCGGAGCACCGCCAGAGA
66 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
* * *
5646508 ACCTAACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGGCA-GGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATT-GGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTG
* * * *
5646572 CGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCAC
* * * *
5646637 ACCCCCTTTAAGAGAATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5646702 GGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTCTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTG-ATTCTTTTT
* * * * *
5646767 GTACATGCCAACAAAATTTCAAGGATCACATCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
5646832 AATTTTAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATTGAAAACGAGTCGTCT
454 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCT
*
5646897 TGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTTTATGAATTTACAAG-CATTAAAAATGG
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-TAAAAATGG
* * * *
5646960 TATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCGTATCGATCCACGGCTTG
583 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACGGCTTG
* * * *
5647025 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCTCTCGTTTCGTCAGTTGACTT
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCATCGGTTGACTT
5647090 AG
713 AG
* * *
5647092 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACTTGCTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
*
5647157 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
66 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
* *
5647222 ACCTGACCGGCGGCATTGGGTTTCCGACGATCGGGGGGGCCAGGGGGGTGCGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGG-TTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTG
* ** *
5647287 CGATGGGTGCTGGTAATTGGCCCTTATGTTGGCCTGCTATCCCTCATCAAGCCTTGAGAACTCAC
195 CGATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCAC
* * *
5647352 ACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGT-GACCATTAAAGTGTCTAAAA
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CCATTAAAGTGTCTGAAA
* * * *
5647416 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTAGAATTTTGAGCTGATTTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGATTCTTTTT
* *
5647481 GTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
5647546 AATTTTGAAAAATCTCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAACAAAAAACTAGTCGTCT
454 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCT
* *
5647611 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
5647676 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCTACCTACCACCGTATCGATCCACGGCTTGC
584 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACGGCTTGC
* * * * * *
5647741 GCATCCCTTCTCTCTGGCCGGTGTAGTGCCCACCCGCCCACCCGCCGCTCGTTTCATCGGTTGCC
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CC-CGC-CCACTCGTTTCATCGGTTGAC
5647806 TTAG
711 TTAG
* * * *
5647810 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAAACCGAGCGTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
5647858 TGGTAGCAGG
Statistics
Matches: 1306, Mismatches: 153, Indels: 33
0.88 0.10 0.02
Matches are distributed among these distances:
710 2 0.00
711 133 0.10
712 343 0.26
713 239 0.18
714 212 0.16
715 308 0.24
716 4 0.00
717 1 0.00
718 64 0.05
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (714 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGATTCTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCATCGGTTGACTTAG
Found at i:5648020 original size:26 final size:26
Alignment explanation
Indices: 5647969--5648021 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5647959 GTTGACTTAG
* **
5647969 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAACCTAA
*
5647995 GCATACGGAGTTCTTTCCCAACCTAA
1 GCATACGGAGTTCATTCCCAACCTAA
5648021 G
1 G
5648022 ATTGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAACCTAA
Found at i:5648851 original size:902 final size:902
Alignment explanation
Indices: 5647092--5649595 Score: 3505
Period size: 902 Copynumber: 2.8 Consensus size: 902
5647082 GTTGACTTAG
* * * *
5647092 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACTTGCTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTAGG
* ** * *
5647157 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCACGAGGCACCATCACCGGAGCATCGTCGGAGA
* * * *
5647222 ACCTGACCGGCGGCATTGGGTTTCCGACGATCGGGGGGGCCAGGGGGGTGCGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * ** *
5647287 CGATGGGTGCTGGTAATTGGCCCTTATGTTGGCCTGCTATCCCTCATCAAGCCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAGCCTTGAGAACTCAC
* * * *
5647352 ACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGT-GACCATTAAAGTGTCTAAAA
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CCATTAAAGTGTATGAAA
* * * *
5647416 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTAGAATTTTGAGCTGATTTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGATTTTTTTT
*
5647481 GTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* ** * * *
5647546 AATTTTGAAAAATCTCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAACAAAAAACTAGTCGTCT
455 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
5647611 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
5647676 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCTACCTACCACCGTATCGATCCACGGCTTGC
585 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
5647741 GCATCCCTTCTCTCTGGCCGGTGTAGTGCCCACCCGCCCACCCGCCGCTCGTTTCATCGGTTGCC
650 GCAT-CCGTCTCTCTGGCCGGCGTAGTGCCCACACGCCCACCCGCCGCTCGTTTCATCGGTTGCC
* *** *
5647806 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAAACCGAGCGTTGTGGTAGCAGGATT
714 GTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAAACCGAGCGTTGTGGTAGCAGGATA
* * * *
5647871 GGCAGCACGCAGAGAGGGACCCGACCGATCCCCGGCTTGTACATCCCGCCCCTCTGGTCGCCTGA
779 GGCAGCACGCAGAGAGAGACCCGACCAATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGCCTGA
* * *
5647936 GCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
844 GCACCCACACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* ** * *
5647995 GCATACGGAGTTCTTTCCCAACCTAAGATTGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTAGG
*
5648060 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCCCGAGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCACGAGGCACCATCACCGGAGCATCGTCGGAGA
* * * *
5648125 ACCTAACCGACGGCATTGGGGTTCCGACGAT-AGGGGGGCCGGGGGGGTGTGCACACATGATGTT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
5648189 CGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCAACAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAGCCTTGAGAACTCAC
* * * * *
5648254 ACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTACTACTAGTAGCCATTAAAGTATATGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAAT
* * *
5648319 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGATTTTTTTTG
* * * **
5648384 TGCATGCCAACAAAAATACAAGGATCATGTCTACTAAGATTGGGGGAAAAAATCCTTCCGAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* ** *
5648449 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGCCGTCTT
456 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
5648514 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCCATAAAAATGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
5648579 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
586 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * ** *
5648644 CATCTCGTCTCTCTGGCCGGCGTAGTGCTCGCACG-CCAGTCCGCCAGCTTGTTTTGTCGGTTGG
651 CATC-CGTCTCTCTGGCCGGCGTAGTGCCCACACGCCCA-CCCGCC-GCTCGTTTCATCGGTTGC
* * * *
5648708 CGTAGGCATAC-GAAGTTCATTCTCAGTCTAAGATCAAACCAGACCGAGGGTTGTGGTAGTAGGA
713 CGTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCAAACCAAACCGAGCGTTGTGGTAGCAGGA
* * * **
5648772 TAGGCAGCACGCAGAG-GAGACCCGGCCAATCCCCGGCTTGCGCATCCCTCCCCTCTGGCCGGGT
777 TAGGCAGCACGCAGAGAGAGACCCGACCAATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGCCT
* * *
5648836 GGGCACCCGCACGCTCGTTTCGTGGGTTAACTTATGCATACAGAGTTCATTCCCAGTCTAA
842 GAGCACCCACACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * *
5648897 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGA-CATAGGGTTGCAGCAGCAAATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCA-AGGGTTGCGGCAGCACATGCTAG
* * ** * * * *
5648961 GCTCAGGCATGTGCTGGTGCTGCATTTTTCTT-CATTAGGGCACCATCGCCAGAGCATCATCAGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCACGA-GGCACCATCACCGGAGCATCGTCGGA
* * * *
5649025 GAACTTGACCGGCGGCATTGGGGTTCCGGCGGTCACGGGGGCCGAGGAGGGGGTGTGCGCACATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCC--GG-GGGGGTGTGCGCACATG
*
5649090 ATGTGCGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATA-AAGCCTTGAGA
191 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA-ACAAGCCTTGAGA
* * * *
5649154 GCTCACACCCCCTTAAAGAGCATTTGAGATTTTACCGGTTTGCTGCCAATAGCCATTAAAGTGTT
255 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTA
*
5649219 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGTTGATTT
320 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGATTT
* * * * * *
5649284 TTCTTTGTACATGCCAACAAAAATAGAAGGATCACGCCTACCATGTTTGGAGCCAAAACTCCTTC
385 TT-TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTC
* *
5649349 CGATAAAATTTTAAAAAATCTCGAACCGTAAAAATTTTTGAAAATCATGAAAAATAGAAAACGAG
449 CGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAG
*
5649414 TCGTCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
514 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
5649479 AATGGCATTGGCATGCCAAAATATGAAGATGTGCCTAAACCCACCTACCAGCCTATCGATCCACG
579 AATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
5649544 GCTTGCACATCCTGTCTCTCTGG-CGAGCGTAGTACTCACCCGCCCGCCCGCC
644 GCTTGCGCATCC-GTCTCTCTGGCCG-GCGTAGTGCCCACACGCCCACCCGCC
5649596 CACCCACCCA
Statistics
Matches: 1410, Mismatches: 175, Indels: 28
0.87 0.11 0.02
Matches are distributed among these distances:
901 8 0.01
902 692 0.49
903 237 0.17
905 2 0.00
906 194 0.14
907 275 0.20
908 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTAGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCACGAGGCACCATCACCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAGCCTTGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGATTTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
ATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCGTCTCTCTGGCCGGCGTAGTGCCCACACGCCCACCCGCCGCTCGTTTCATCGGTTGCCGT
AGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAAACCGAGCGTTGTGGTAGCAGGATAGG
CAGCACGCAGAGAGAGACCCGACCAATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGCCTGAGC
ACCCACACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:5648907 original size:26 final size:26
Alignment explanation
Indices: 5648871--5648923 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5648861 GTTAACTTAT
5648871 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5648897 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5648923 G
1 G
5648924 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5654845 original size:719 final size:716
Alignment explanation
Indices: 5650521--5654853 Score: 5894
Period size: 720 Copynumber: 6.1 Consensus size: 716
5650511 CCCAGTCTAA
* * * *
5650521 GCATACGAAGTTCATTCCCAGTCTAAGATCAGCCCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
5650586 CCCGGGCATGTGCTGGTGCCATACTTTTCTTCGTCGGGG------CAC----CATCGTCGGAGAA
66 CTCGAGCATGTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCATCACGGAGCATCGTCGGAGAA
* ** **
5650641 CCTGACCGGTGGCATTGGATTTCCGACGATCAAGGGGGCCGGGGGGGACTGTGCGCACATGATGT
131 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGG--TGTGCGCACATGATGT
* * * *
5650706 GCGGTGGCTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAAAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* * * *
5650770 CACCCCCCTAAAAAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
5650835 T-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
5650899 GTGCATGCCAACAAGAATACAAGGATCCCCTCTACCAAGTTTGGGGCCAAAACCCCTTTCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCG-AAA
* *
5650964 AATTTAAAAAAATCCCGAACCGTAAAAAGGTTT-GAAAATCATGAAAAATAGAAAACGAGTCGTC
452 AATTTTAAAAAATCCCGAACCGTAAAAA-GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
5651028 TTGCCATGCAACTTCGCGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
5651093 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTTTCAATCCACGGCTCG
581 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
5651158 CGCATCCTGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCCCGCCCGTTCGTTTTGTCGGTTG
646 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTG
5651223 GCTTAG
711 GCTTAG
* * * * * *
5651229 GCATACGGAGTTCATTCCTAGTCTAAGACCGGATCGGACCAAGGGTTGCTGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
5651294 CTCGAGCATGTGCTAGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTTGGAGA
66 CTCGAGCATGTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCATC-ACGGAGCATCGTCGGAGA
** * * * * *
5651359 ACCTGACCAACGGCATTGGGGTTCTGGCGATTGGGGGGGCCAGGGGGGTTGTGCACACATGATTT
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGG-TGTGCGCACATGATGT
* * *
5651424 GCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTTGACAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* * *
5651489 CACCCCCGTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
** *
5651554 TGGGGACACTTTTTTCAAATTCTCACAAAATCTTGTACACTTCCAGTTTTTAGCTG-ATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
5651618 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACCCATTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCG--AA
* * *
5651683 AAATTTTAAAAAATCCCGAACAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATC
451 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
5651748 TTGCCATGCAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** *
5651813 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTG
581 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
5651878 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTG
646 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTG
5651943 GCTTAG
711 GCTTAG
* *
5651949 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
5652014 CTCGGGCATGTGCTGGTGCCAGAATTTTCTTCGCCGGGGCACCAT--C---G---C--CAGAGCA
66 CTCGAGCATGTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCATCACGGAGCATCGTCGGAGAA
* * * * *
5652069 CTTGACCGGCGGCATTGGGGTTCCAACGATCGGGGGGGTCGGGGGGTGTGTGCACATGATGTACG
131 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
5652134 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
* * *
5652199 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATTAGCCATTAAAGTGTTTTAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
5652264 GGACATTTTTTTCAAATAGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
5652329 CATGCCAACAAATATACAAGGAACACGTCTACCAAGTTTGGGGCCAAAACCCCTTTCGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCG-AAAAAT
* * * ** *
5652394 TTTAAAAAATCTCGAATCGTAAAATGTTTTGAAAATCATGAAAAATAGAAAAATGAGTCGTCTTG
455 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG-AAAACGAGTCGTCTTG
* * *
5652459 CCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAGAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * ** * *
5652524 TGGCACACAAAAATATGGAGATGTACCTAAACCCACCTACCACCCTATCGATCTGCGACTTACGC
584 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * * *
5652589 ATCCCGTCTCTCTCGTCGGCGTAGTGCCCGCCCGCCTGCCCGCTCACTCATTTCGTCGGTTGGCT
649 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCT
5652654 TAG
714 TAG
* * * * *
5652657 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACC-GAACCAACGGTTGCGGCAGCAAATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * *
5652721 GCTCGAGCATGTGCCGGTGTCGTATTTTTCTTCACCGGGGCAACATCACCGGAGCATCGTCGGAA
65 GCTCGAGCATGTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCATCA-CGGAGCATCGTCGGAG
* * * * * *
5652786 AACCTGACCGACGGCATTAGGGTTCC-AGCGAT-TGGGGGGCCGGGGTGGTATGCACACAAGATG
129 AACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGG-GGTGTGCGCACATGATG
*
5652849 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
* *
5652914 ACACCCACTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
5652979 ATGGGGACAATATTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
5653044 TATGCATGCCAGCAAAAATACAAGGATCACGTCTACGAAGTTTGGGGCCAAAACGCCTTCCAAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCC-GAA
* * * * *
5653109 AAATTTTAAAAAATCCCGAACGGCAAAAAGTTTCAAAAATCATGGAAAATAAAAAATGAGTCGTC
451 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
5653174 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
5653239 CATTGGCACACAAAAATATGAAGATGTGCGTAAACCCACCTACCATCCC-ATTGATCCATGGCTT
581 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCCTATCGATCCACGGCTT
* * * * *
5653303 GCGCATTCCGTCTCTCTGGCCGACGTAAT----GCCCGCCCACCCGCCCGTTCGTTTTCTCGGTT
645 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTT
*
5653364 GGGTTAG
710 GGCTTAG
* * * **
5653371 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGTTGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * *
5653436 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCTGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGAGCATGTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCATC-ACGGAGCATCGTCGGAGA
* * * *
5653501 ACCTGACCGGTGGCATTGGGGTGCCGGCGATCGGGGGGGCCGGGGAGTGTGCGCACATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
5653566 GATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCATGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* * *
5653631 CCCCCTTAAAAAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCA-TAAAGTGTCTAAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
5653695 GGGACACTTTTTTCAAATGATCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
5653760 GGATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAGAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCGAA-AAA
* * * * *
5653825 TTTTAAAAAATCCCGAACGGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACAAGTCGTCTCG
454 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
5653890 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAACGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
5653955 TGGCACACAGAAATATGAAGATGTGCGTAAACCCACCTACCATCCTATCGATCCACGGCTTGCAC
584 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * ** * *
5654020 ATTCCGTTTCTCTGGCCAACGTAGTGCCCGCCCACCTGCCCGCCCTTTCATTTTCTCGGTTGGCT
649 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCT
5654085 TAG
714 TAG
** * * *
5654088 GCATACAAAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCTGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
5654153 ATCGAGCATGTGCTAGTGTCATATTTTTCTTCGCCGAGGCACCATCAACGGAGCATCGCCGGAGA
66 CTCGAGCATGTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCATC-ACGGAGCATCGTCGGAGA
*
5654218 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGAGGGTTGTGCGCACATGATGT
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-G-GGGGTGTGCGCACATGATGT
* * *
5654283 GTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGACAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* *
5654348 CACCCCCGTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
5654413 TGAGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGTTGATTTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
5654478 GTGCATGCCTAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTACCAGAA
388 GTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCC-GAA
* * * ** * *
5654542 AAATTTTAAAAAGTCCCGCACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATC
451 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
5654607 TTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
5654672 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATACATGGCTTG
581 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
5654737 CGCTTCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCTGCCTGCTCGCTCGTTTCT-TCGGCT
646 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTT-TGTCGGTT
*
5654801 AG-TTAG
710 GGCTTAG
* * *
5654807 GCATACAGAGTTCATTCCCCGTCTAAGATCAGACCAGACCGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
5654854 ACGGTAGTAG
Statistics
Matches: 3202, Mismatches: 374, Indels: 87
0.87 0.10 0.02
Matches are distributed among these distances:
707 235 0.07
708 444 0.14
709 36 0.01
711 2 0.00
712 4 0.00
713 331 0.10
714 287 0.09
715 14 0.00
717 186 0.06
718 205 0.06
719 699 0.22
720 753 0.24
721 6 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (716 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCATCACGGAGCATCGTCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCGAAAAATT
TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTA
G
Found at i:5658014 original size:685 final size:685
Alignment explanation
Indices: 5655814--5659390 Score: 4897
Period size: 685 Copynumber: 5.1 Consensus size: 685
5655804 AGCGCCCGCA
* * * * * *** *
5655814 CGTTCGTTTCGTGGGTTGACTTAGGCATAC-AGGTTCATTCCCAGTCTAGGAT-GGATAAGACCG
1 CGTTCATTTCGTCGGTTGGCTTAGGCATACGA-GTTCATTCCCAATCTAAGATCGGACCGGACCA
* * * ** ** *
5655877 AGGGTTACGACAGCACATGCTGGGCTCTGGCATGTGTTGGTGCCGTATTTTTCTTCACTGGGGTA
65 AGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCA
* * * *
5655942 CCATCGTCGGAGAACCTGACTGGCAGAATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGA-GT
130 CCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGATGT
* * * * *
5656006 GCGCACATGATTTACGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAA
195 GCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAA
* *
5656071 CCTCGAGAACTCACACCCCCTTAAAGAGCATGTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATT
260 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
5656136 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
325 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* *
5656201 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTCCCAAGTTTGGAGCCAAAA
390 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
*
5656266 CTCCTTGCGAAAATATCCCGAACCACAAAAAGTTTCGAAAGTCATGAAAAATAGAAAACAAGTCG
455 CTCCTTGCGAAAATATCCCGAACCACAAAAAGTTTCGAAAGTCGTGAAAAATAGAAAACAAGTCG
5656331 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
520 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
5656396 GGCATTGGCATACATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
585 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
5656461 TACGCATCCCACCGGTGTAGTGGCTGCCCGCCCACC
650 TACGCATCCCACCGGCGTAGTGGCCGCCCGCCCACC
*
5656497 CGTTCATTTCGTTGGTTGGCTTAGGCATACGAGTTCATTCCCAATCTAAGATCGGACCGGACCAA
1 CGTTCATTTCGTCGGTTGGCTTAGGCATACGAGTTCATTCCCAATCTAAGATCGGACCGGACCAA
* *
5656562 GGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCATCGTTGGGGCAC
66 GGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCAC
* * *
5656627 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGATGATCGGGGGGGTCGGGGGGGATGTC
131 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGATGTG
*
5656692 CGCACATTATGTGCAATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAAC
196 CGCACATGATGTGCAATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAAC
*
5656757 CTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
261 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
5656822 AAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTT-
326 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTA
*
5656886 GCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAA
390 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * *
5656950 CTCCTTGTGAAAA-ATTCCCCGAACCCACAAAAAGTTTTCGGAAGTTGTGAAAAATAGAAAAACA
455 CTCCTTGCGAAAATA-T-CCCGAA-CCACAAAAAG-TTTCGAAAGTCGTGAAAAATAG-AAAACA
5657014 AGTCGTCTTTGCCATGAAACGTTCACGTGAAGGGCTTAAGGGAACCATTGGTATGAATTTTACAA
515 AGTCGTC-TTGCCATGAAAC-TTCACGTGAA-GGCTTAAGGG-ACCATT-GTATGAA-TTTACAA
*
5657079 GCCATAAAAATGGCA-TGGCATGCAGGGAAATATGAAAGATGTGGCCTAAACCCCACTTTACCAA
574 GCCATAAAAATGGCATTGGCATGCA--GAAATATG-AAGATGT-GCCTAAA-CCCAC-CTACC-A
*
5657143 CCCTATCGATCCACGGCTGT--GCATCCCGCCGAGCGTAAGTGGCCGCCCGCCCACTC
632 CCCTATCGATCCACGGCT-TACGCATCCCACCG-GCGT-AGTGGCCGCCCGCCCAC-C
* * *
5657199 CGGTCCGCTCATTTTGTCAGTTGGCTTAGGCATACGGAGATTCATTCCCAATCTAAGATCGGATC
1 C-GT----TCATTTCGTCGGTTGGCTTAGGCATAC-GAG-TTCATTCCCAATCTAAGATCGGACC
* *
5657264 GGA-CGAGGG-TACCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGT
59 GGACCAAGGGTTA-CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGT
* * *
5657327 TGGGGCACCATCGTCGGAGAACCTTACCGGCGGCATTGTGGTTTCGACGATCGGGGGGGCCGAGG
123 TGGGGCACCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGG
* * *
5657392 GGGATCTGCACACATGATGTTCAATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCT
188 GGGATGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCT
* *
5657457 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGT
253 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
5657522 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
318 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
5657587 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTCCCAAGTTTGGA
383 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
*
5657652 GCCAAAACTCCTTGCGAAAATATCCCGAACCATAAAAAGTTTCGAAAGTCGTGAAAAATAGAAAA
448 GCCAAAACTCCTTGCGAAAATATCCCGAACCACAAAAAGTTTCGAAAGTCGTGAAAAATAGAAAA
5657717 CAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
513 CAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
5657782 TAAAAATGGCATTGGCATGCATAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATC
578 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
*
5657847 CACGGCTTACGCATCCCACCGGTGTAGTGGCCGCCCGCCCACC
643 CACGGCTTACGCATCCCACCGGCGTAGTGGCCGCCCGCCCACC
5657890 CGTTCATTTCGTCGGTTGGCTTAGGCATACGAGTTCATTCCCAATCTAAGATCGGACCGGACCAA
1 CGTTCATTTCGTCGGTTGGCTTAGGCATACGAGTTCATTCCCAATCTAAGATCGGACCGGACCAA
* *
5657955 GGGTTACGGCAGCATATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCATCGTTGGGGCAC
66 GGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCAC
* *
5658020 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGTCGGGGGGGATGTG
131 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGATGTG
*
5658085 CGCACATGATGTGCAATGGGTGCTCGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAAC
196 CGCACATGATGTGCAATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAAC
*
5658150 CTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
261 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
5658215 AAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
326 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * **
5658280 CTGAATTTTTTTGTGCATGCCAACATAAATACAAGGATAACGTCTACTAAGTTTGGGGTAAAAAC
391 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* ** * * * *
5658345 TCCTT-CAGAAAAAATTTTAAAAAAACCCGAACCGGACAAAGTTTCAAAAATCGTAAAAAATAGA
456 TCCTTGC-G--AAAA---T-----ATCCCGAACCACAAAAAGTTTCGAAAGTCGTGAAAAATAGA
*
5658409 AAACGAG-CTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
510 AAACAAGTC-GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * * * *
5658473 GCCATAAGAATGGCATTGGTAGGCAGAAATATGAAGATGAGCGTAAACCCACCTACCACCCTATC
574 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
5658538 GATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGACGTAGTGCCCGCCCGCCCACT
639 GATCCACGGCTTACGCATCCC-AC-C----G--G-CGTAGTGGCCGCCCGCCCACC
* * * *
5658594 CGTT--TTAT--TCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCCAAGATCGGATCGGATC
1 CGTTCATT-TCGTCGGTTGGCTTAGGCATACG-AGTTCATTCCCAATCTAAGATCGGACCGGACC
* * * *
5658655 GAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGC
64 AAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTTGGGGC
* * *
5658720 ACCATCGCCGAAGCATCACCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC
129 ACCAT---C---G--T---CGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGC
* * * *
5658785 CGAAGGGGG-TGTGCGCGCAGGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
183 CG-GGGGGGATGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCT
*
5658849 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTAAAAGAGCATTTGAGATTTTACAGGTTTGCT
247 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
5658914 GCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
312 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * * * *
5658979 CTTCGAGTTTTTAGCTAAATTGTTTTGTGCGTGCGAGCAAATATACAAGGATCACATCTACCAAG
377 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * *
5659044 TTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAAT
442 TTTGGGGCCAAAACTCCTTGC--GAAAA---T-----ATCCCGAACCACAAAAAGTTTCGAAAGT
* * *
5659109 CGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGT
497 CGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* ** * *
5659174 ATGAATTTACAACCCATAAAAATGATATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
562 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * *
5659239 TACCACCCTATCGATCCACGGCTTGCGTATCTAATCTCTCTCTCCGGCGTAGTGCTCGTCCGCAC
627 TACCACCCTATCGATCCACGGCTTACG---C--A--TC-C-CACCGGCGTAGTG---G-CCGCCC
*
5659304 GCCCGCC
679 GCCCACC
* * *
5659311 CGTTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGA-CTGGACCGGACC
1 CGTTCATTTCGTCGGTTGGCTTAGGCATACG-AGTTCATTCCCAATCTAAGATC-GGACCGGACC
* *
5659375 AAGGGTTGCGGTAGCA
64 AAGGGTTACGGCAGCA
5659391 AGATCGACAG
Statistics
Matches: 2606, Mismatches: 190, Indels: 159
0.88 0.06 0.05
Matches are distributed among these distances:
683 46 0.02
684 165 0.06
685 618 0.24
686 43 0.02
687 23 0.01
688 13 0.00
689 12 0.00
690 13 0.00
691 12 0.00
692 24 0.01
693 37 0.01
694 36 0.01
695 185 0.07
696 15 0.01
697 15 0.01
698 12 0.00
699 36 0.01
700 38 0.01
701 44 0.02
702 106 0.04
703 14 0.01
704 34 0.01
705 14 0.01
706 20 0.01
707 41 0.02
708 367 0.14
709 43 0.02
710 2 0.00
713 481 0.18
714 8 0.00
715 1 0.00
716 2 0.00
717 14 0.01
718 2 0.00
719 3 0.00
720 63 0.02
721 3 0.00
722 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (685 bp):
CGTTCATTTCGTCGGTTGGCTTAGGCATACGAGTTCATTCCCAATCTAAGATCGGACCGGACCAA
GGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCAC
CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGATGTG
CGCACATGATGTGCAATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAAC
CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
TCCTTGCGAAAATATCCCGAACCACAAAAAGTTTCGAAAGTCGTGAAAAATAGAAAACAAGTCGT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
ACGCATCCCACCGGCGTAGTGGCCGCCCGCCCACC
Found at i:5659545 original size:26 final size:26
Alignment explanation
Indices: 5659495--5659547 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5659485 GTTGACTTAG
*
5659495 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCACAATCTAA
* *
5659521 GCATACGGAGTTCATTCAGAGTCTAA
1 GCATACGGAGTTCATTCACAATCTAA
5659547 G
1 G
5659548 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAATCTAA
Found at i:5664514 original size:699 final size:700
Alignment explanation
Indices: 5660388--5665996 Score: 7464
Period size: 699 Copynumber: 7.9 Consensus size: 700
5660378 CGTTTCGTGT
* * * * * * * **
5660388 GTTGACTTAGGCATA-GGAGTTCATTCCCAGTCTAAGATCGAACCGGATCAAGGTTTGTGGCAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTACGGCAGC
* *
5660452 ACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGGCGGAGCA
66 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C---G--
** * * * *
5660517 TCGCCAGAGAACCTGACCGGCGGCATTGGCATTCCGACGACCGGGGGGGGCGGAGGGGGGGTGTG
123 TCG---GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGGCCGA-GGGGGATCTG
* *
5660582 CGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAT
183 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
5660647 CTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTA
248 CTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * * *
5660712 AAGTGTCTGAAATGCGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACGTCAAGTTTTTAG
313 AAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
*
5660777 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
378 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA
* * * ** *
5660842 TCCTTCCAAAAAAATTTTAAAAAATCTCGAACCCCAAAAAGTTTTGAAAATCATGAAAAATAGAA
443 TCCTTCCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* * *
5660907 AATGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGCGACCATTGTATGAATTTACAA-C
508 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
5660971 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTACACCCACCTACCACCCTATCGA
573 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * *
5661036 TCCACGGCTTGCGCATCCCGCCGGCGTAGTGGCCGCCCGCCCAACCGCCCGCTC-TTTTCGTCA
638 TCCACGGCTTGCGCATCCCGCCGGCGCAGTGGCCGCCCGCCCACCCGCCCGCTCGTTTT-ATCG
* * * * * *
5661099 GTTGGCTTAGGCATACGGAGTTCTTTCTCAATCTAATATCGAACCGGACCGAGGGTTATGGCAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTACGGCAGC
* * * * *
5661164 ACATGTTGGGCTCGGGGATGTGCTGGTGCCGTATTTTTCTTCGT-TGGGCACCATCGTTGGAGAA
66 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAA
* *
5661228 CCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCG-GGGGAGATCTGCACACATGATGT
131 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGG-GATCTGCGCACATGATGT
* *
5661292 GCAATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* *
5661357 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTAGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAA
5661422 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
5661487 GTGCATGCCAACAAAAATAGAAGGATAACGTCTACGAAGTTTGGGGCCAAAACTCCTTTCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCCAAAA
* * * * *
5661552 AATTTTAAAAAAACCCGAATCGCACAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGCCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
5661617 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
5661682 ATTGGCACGCAGAAATATGAAGACGTGCCTAAACCCGCCTACCATCCTATCGATCCACGGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *** * *
5661747 GCATCCCGTCTCTCTGGACGGCGTAGTGCCCGCCCACCTGTCCGCCCACTCGTTTCATCG
650 GCATCCCG---C-C-GG-C-GC--AGTGGCCGCCCGCCCACCCGCCCGCTCGTTTTATCG
** * * * * **
5661807 GTTGGCTTAAACATACGAAGTTCACTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTACGGCAGC
* ** * * * * * * * *
5661872 ACTTGCTGGGCTCAAGCATGTTCTGGTGCCGCTTTTTTCTTTGCCAGGGAACCATCGCCGAAGAA
66 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAA
* * * *
5661937 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGAGGGTCAAGAGGGGGGTGTGCGCACATGATG
131 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGGC-CGAGGGGGATCTGCGCACATGATG
* *
5662002 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* *
5662067 ACACCCCCTTAAAGAGCATTTGAGATTTTCCAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTTAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAA
5662132 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
5662197 TGTGCATGCCAACAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTT-GC--
389 TGTGCATGCCAAC-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCCAA
* * * * ** * *
5662259 -------GAAAAAATCCCGAACCACAAAAAGTTTTAGAGGTTGTGAAAAATAGAAAACAAGTCGT
453 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
5662317 ATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
5662382 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGACTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * **
5662447 GCGTATCCCGTCGGCGTAGTGGCCGCTCGCCCACCCGCCCGCTCGTTTCGTCG
648 GCGCATCCCGCCGGCGCAGTGGCCGCCCGCCCACCCGCCCGCTCGTTTTATCG
* *
5662500 GTTGCCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACTGAGGGTTACGGCAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTACGGCAGC
* **
5662565 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGTTAGGG-ACCATCGTCGGAGAA
66 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAA
* * *
5662629 CTTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGAGGGGGATCTGCACACATGATGTG
131 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGATCTGCGCACATGATGTG
* * *
5662694 CAATGGGCGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *
5662759 ACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTTAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAT
5662824 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
5662889 TGCATGCCAACAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTT-GC----
391 TGCATGCCAAC-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCCAAAA
* * * * ** * * *
5662949 -----GAAAAAATCCCGAACCACAAAAAGTTTTAGAGGTTGTGAAAAATAGAAAACAAGTCGTAT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
5663009 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
5663074 ATTGGCATGCAGAAATATGAAGACGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGC
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *** *
5663139 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTTGCCCGCCCGCTCGTTTCATCG
650 GCATCCCG---C-C-GG-CG-C--AGTGGCCGCCCGCCCACCCGCCCGCTCGTTTTATCG
* *** ** *
5663199 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTACGATAGT
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTACGGCAGC
**
5663264 ACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA
66 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC---G--
* * *
5663329 TCACCAGAGAACCTGGCCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTGCG
126 ------GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGATCTGCG
*
5663394 CACATGATGTGCGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
185 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
5663459 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTCCAGGTTTGCTGCCGGTAGCCATTAAA
250 CAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
5663524 GTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTT-GC
315 GTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGC
* * *
5663588 TGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACT
379 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT
* * * ** * *
5663653 CCTT-GC---------GAAAAAATCCCGAACCACAAAAAGTTTCGGAAGTTGTGAAAAATAGAAA
444 CCTTCCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* *
5663708 ACAAGTCGTCTTGCCATGAAACTTCACGTGCAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
509 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
5663773 ATAAAAATGGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGAT
574 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * * *
5663838 CCACGGCTTGTGCATCCCGCCGGCGCAGTGGCCGCCCGCCCACTCGACCGCTCATTTTGTCA
639 CCACGGCTTGCGCATCCCGCCGGCGCAGTGGCCGCCCGCCCACCCGCCCGCTCGTTTTATCG
* * *
5663900 GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACTGAGGGTTACGGCAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTACGGCAGC
* * *
5663965 ACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTTGTTGGGGCACCATCGTCGGAGAA
66 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAA
* * * *
5664030 CCTTACCGGCGACATTGGGGTTTCGACGATCGGGGGGGCCGAGGGGGATCTGCACACATGATGTG
131 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGATCTGCGCACATGATGTG
* *
5664095 CCATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
*
5664160 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTTAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAT
*
5664225 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAA-TTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
5664289 TGCATGCCAACAAAAATACAAGGATAACGTCTACCAAGTTTAGGACCAAAAATCCCTCCCCAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCCAAAAA
* * * * *
5664354 ATTTAAAAAAAACCCGAACCGCACAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGCCGTCTT
456 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
5664419 GCCATGAAACTTCACGTGAAGGCTTAAGCGTCCATTGTATGAATTTACAAGCCATAAAAATGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
5664484 TTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCC
586 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
5664549 CATCCCGTCGGCGTAGTGGCCGCCCGCCCACCCGCCTGCTCGTTTCT-TCG
651 CATCCCGCCGGCGCAGTGGCCGCCCGCCCACCCGCCCGCTCGTTT-TATCG
** * *
5664599 AATGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCAAGGGTTACGACAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTACGGCAGC
* * * *
5664664 ACATGCTGGACTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTTGGGGCACCATCGCCGGAGAA
66 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAA
* * * * * *
5664729 CCTGACCGACGACATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGATCTGCCCACATGATATG
131 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGATCTGCGCACATGATGTG
* * * *
5664794 CAATGGGTGCTGGTACATGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
5664859 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAT
*
5664924 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
5664989 TGCATGCCAACAAAAATACAAGGATAATGTCTACGAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCCAAAAA
* * ** *
5665054 ATTTTAAAAAAACCCGAACCGCACAAAGTTTCAAAAATCGAAAAAAATAGAAAACGAGCCGTCTT
456 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
5665119 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGTA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
5665184 TTGGCATGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCATGGCTTACG
586 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
5665248 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCGTCCGCCCGTCCGCCCGTCCGCCCGTCC
651 CATCCCG---C-C-GG-CG-C--AGTG---GCCGCCCG-CC-CAC--CCG--C--CCG--C-T--
5665313 GCCCGCTCGTTTCATCG
691 ---CG-T--TTT-ATCG
* * * * * *
5665330 GTTGGCATAGGCATACGGAGCTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGACAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTACGGCAGC
* * *
5665395 ACATGCTGGGCTCGGGCATGTGCTGTTGCCACATTTTTCTTCGTCGGGGCACCGTCGTCGGAGCA
66 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC---G--
* * * *
5665460 TCACCAGAGAACCTGACCGGCGGCACTGGGGTTCCGACGATCGGGTGGGCCGAGGGGGTGTGTGC
126 ------GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGG-ATCTGC
5665525 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
184 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
5665590 TCGAGAACTCACATCCCCTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
249 TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
5665655 TGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
314 AGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
5665720 TGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAGT
379 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT
* * **
5665785 CCTTCCAAAAAAATTTTAAAAAATTCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
444 CCTTCCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* * * * *
5665850 ACGAGTTGTCTTGCCATGAAACTTCACGTGAAAGTTTAAGGGACAATTGTATGAATTTACAACCC
509 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
5665915 ATAAAAATGGTATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGAT
574 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
*
5665980 CCACGGCTTGCGTATCC
639 CCACGGCTTGCGCATCC
5665997 TATCTCTCTC
Statistics
Matches: 4390, Mismatches: 409, Indels: 165
0.88 0.08 0.03
Matches are distributed among these distances:
689 63 0.01
690 697 0.16
691 4 0.00
692 45 0.01
693 123 0.03
694 1 0.00
695 3 0.00
696 3 0.00
697 6 0.00
698 366 0.08
699 829 0.19
700 260 0.06
701 141 0.03
702 177 0.04
703 6 0.00
704 6 0.00
705 6 0.00
706 2 0.00
707 1 0.00
708 115 0.03
709 51 0.01
710 237 0.05
711 499 0.11
712 135 0.03
713 2 0.00
715 3 0.00
717 1 0.00
719 2 0.00
721 1 0.00
722 1 0.00
727 2 0.00
728 1 0.00
729 1 0.00
730 2 0.00
731 112 0.03
734 1 0.00
742 46 0.01
743 406 0.09
744 33 0.01
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (700 bp):
GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTACGGCAGC
ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGATCTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCCAAAAA
ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGCCGGCGCAGTGGCCGCCCGCCCACCCGCCCGCTCGTTTTATCG
Found at i:5665292 original size:8 final size:8
Alignment explanation
Indices: 5665274--5665317 Score: 81
Period size: 8 Copynumber: 5.6 Consensus size: 8
5665264 CCGACGTAGT
5665274 GCCCG-CC
1 GCCCGTCC
5665281 GCCCGTCC
1 GCCCGTCC
5665289 GCCCGTCC
1 GCCCGTCC
5665297 GCCCGTCC
1 GCCCGTCC
5665305 GCCCGTCC
1 GCCCGTCC
5665313 GCCCG
1 GCCCG
5665318 CTCGTTTCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
7 5 0.14
8 31 0.86
ACGTcount: A:0.00, C:0.64, G:0.27, T:0.09
Consensus pattern (8 bp):
GCCCGTCC
Found at i:5666241 original size:26 final size:26
Alignment explanation
Indices: 5666212--5666264 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5666202 GTTGACGTAG
5666212 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5666238 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5666264 G
1 G
5666265 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5667141 original size:26 final size:26
Alignment explanation
Indices: 5667111--5667163 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5667101 GTTAACTTAG
5667111 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
5667137 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5667163 G
1 G
5667164 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5667329 original size:898 final size:896
Alignment explanation
Indices: 5665340--5667569 Score: 3178
Period size: 898 Copynumber: 2.5 Consensus size: 896
5665330 GTTGGCATAG
* * *
5665340 GCATACGGAGCTCATTCCCAGTCTAAGATC-AGATCAGACCGAGGGTTACGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ATCGGACCGAGGGTTGCGACAGCACATGCTGG
* * * * * *
5665404 GCTCGGGCATGTGCTGTTGCCACATTTTTCTTCGTCGGGGCACCGTCGTCGGAGCATCACCAGAG
65 GCTCGAGCATGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * *
5665469 AACCTGACCGGCGGCACTGGGGTTCCGACGATCGGGTGGGCCGAGGGGGTGTGTGCGCACATGAT
130 AACCTAACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGAGGGGG-GTGTGCGCACATGAT
5665534 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
194 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
5665599 CACATCCCCTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGA
259 CACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
5665664 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
5665729 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAGTCCTTCCAAA
388 TTGTGCATGCCAAGAAAAATACAAGGATCATGTCTACCAAGTTTGAGACCAAAACTCCTTCCAAA
* * *
5665794 AAAATTTTAAAAAATTCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGT
453 AAAATTTTAAAAAATTCCGAACCGCAAAAAGTTTTGAAAACCGTGAAAAATAAAAAACGAGTCGT
* *
5665859 CTTGCCATGAAACTTCACGTGAAAGTTTAAGGGACAATTGTATGAATTTACAACCCATAAAAATG
518 ATTGCCATGAAACTTCACGTGAAAGTTAAAGGGACAATTGTATGAATTTACAACCCATAAAAATG
* * * *
5665924 GTATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTT
583 GCATTGGCACACAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * *
5665989 GCGTATCCTATCTCTCTCCCCGACGTAGTGCCCGCCCGTCCGTTCATTTCATCGGTTGGCTTAGG
648 GCGCATCCCATCTCTCTCCCCGACGTAGCGCCCGCCCGCCCCTTCATTTCATCAGTTGGCGTAGG
* * * * * **
5666054 CATACGAAGTTCATTCCCAGTCTAAGATTGTACCGGATCGAGGGCTACGGTAGCAAGATCGACAG
713 CATACGAAGGTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGCTACGACAGCAAGATCGACAG
* * * * **
5666119 CACATAGAGGCAGACCCGATCGATCCTCGGCTTGCACATCCCGCCCCTCTGGTCGACTGAGCGTC
778 CACATAGAGGCAGACACGATCGATCCCCGACTTGCACATCCCGCCCCTCTGGCCGACTGAGCACC
** * *
5666184 CGCATGCTCGTTTCGTGAGTTGACGTAGGCATACGAAGTTCATTCCCAGTCTAA
843 CGCACACTCGTTTCATGAGTTAACGTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * **
5666238 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAAGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGCGACAGCACATGCTGGG
* ** ** *
5666303 CTCGAGAATGTGCTGGCACTACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGAGCATGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
5666368 ACCTAACCGGCGGCATTGGGG-TTCTGACGATTGGTGGGGGCGGGGGGGGGTGTGCGCACATGAT
131 ACCTAACCGGCGGCATTGGGGTTTC-GACGATCGG-GGGGGCCGAGGGGGGTGTGCGCACATGAT
* * * *
5666432 GTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGACCCGTATCCCTCATCAAACCTCAAGAACT
194 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
5666497 CACACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTAGCTGCCAGTAGCCATTAAAGTGTCTGA
259 CACACC-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
5666562 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
5666627 TTATGCATGCCAAGAAAAATACAAGGATCATGTCTACCAGGTTTGCAG-CCAAAACTCCTTTCAA
388 TTGTGCATGCCAAGAAAAATACAAGGATCATGTCTACCAAGTTTG-AGACCAAAACTCCTTCCAA
*
5666691 AAAAATTTTAAAAAA-TCTCGAACCG-TAAAAGCTTTTGAAAACCGTGAAAAATAAAAAACGAGT
452 AAAAATTTTAAAAAATTC-CGAACCGCAAAAAG-TTTTGAAAACCGTGAAAAATAAAAAACGAGT
* * *
5666754 CGTATTGCCATGAAACTTCACGTGAAGGCTTAAAGGGACCATTGTATGAATTTACAAGCCATAAA
515 CGTATTGCCATGAAACTTCACGTGAAAG-TTAAAGGGACAATTGTATGAATTTACAACCCATAAA
*
5666819 AATGGCATTGGCACACAGAAATATGAAGATGTGCCAAAACCCACTTACCACCCTATCGATCCACG
579 AATGGCATTGGCACACAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACG
* * * * ** *
5666884 GTTTGTGCATCCCGTTTCTCTGGCCGACGTAGCGCCCGCCCGCCCACTTC-TTTCGTCAGTTGGC
644 GCTTGCGCATCCCATCTCTCTCCCCGACGTAGCGCCCGCCCGCCC-CTTCATTTCATCAGTTGGC
* * * *
5666948 GTAGGCATACGGAGGTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACGACAGCAGGATC
708 GTAGGCATACGAAGGTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGCTACGACAGCAAGATC
* ** * * **
5667013 GACAGCACGTAGAGGTGGACACGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGTTGA
773 GACAGCACATAGAGGCAGACACGATCGATCCCCGACTTGCACATCCCGCCCCTCTGGCCGACTGA
* * *
5667078 GCACCCGCACACTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 GCACCCGCACACTCGTTTCATGAGTTAACGTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * *
5667137 GCATATGGAGTTCATTCTCAGTCTAAGATCGAATCGGACTGAGGGTTGCAACAGCACATGGTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
5667202 CTCGAGCATGTGCTGGTGCTGCGTTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGAGCATGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
5667267 ACCTTACCGGTGGCATTGGGGTTTCGGCGATCGGGGGGGCCGAAGGGGGTGTGCGTACATGATGT
131 ACCTAACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGT
*
5667332 GCGATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
196 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
5667397 CACCCCTTTAAAGAGAATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAA
261 CACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
5667462 TGGGGACACTTTTTTCAAATGGTCACAAATTCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTG
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
5667527 GTGCATGCC-TGAAAAAATACGAGGATCATGCCTATCAAGTTTG
390 GTGCATGCCAAG-AAAAATACAAGGATCATGTCTACCAAGTTTG
5667570 GGCCCGCCCG
Statistics
Matches: 1174, Mismatches: 146, Indels: 24
0.87 0.11 0.02
Matches are distributed among these distances:
897 14 0.01
898 709 0.60
899 445 0.38
900 6 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTAACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAAGAAAAATACAAGGATCATGTCTACCAAGTTTGAGACCAAAACTCCTTCCAAAAAA
ATTTTAAAAAATTCCGAACCGCAAAAAGTTTTGAAAACCGTGAAAAATAAAAAACGAGTCGTATT
GCCATGAAACTTCACGTGAAAGTTAAAGGGACAATTGTATGAATTTACAACCCATAAAAATGGCA
TTGGCACACAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCATCTCTCTCCCCGACGTAGCGCCCGCCCGCCCCTTCATTTCATCAGTTGGCGTAGGCAT
ACGAAGGTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGCTACGACAGCAAGATCGACAGCAC
ATAGAGGCAGACACGATCGATCCCCGACTTGCACATCCCGCCCCTCTGGCCGACTGAGCACCCGC
ACACTCGTTTCATGAGTTAACGTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:5668508 original size:26 final size:26
Alignment explanation
Indices: 5668472--5668524 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5668462 GTTGACTTAG
5668472 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
5668498 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
5668524 G
1 G
5668525 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:5670304 original size:26 final size:26
Alignment explanation
Indices: 5670274--5670326 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5670264 GTTGACTTAG
*
5670274 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
5670300 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
5670326 G
1 G
5670327 ATCAGGACCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:5671208 original size:26 final size:26
Alignment explanation
Indices: 5671172--5671222 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5671162 TGCCTTAGGG
5671172 ATACGAAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
*
5671198 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
5671223 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:5671783 original size:893 final size:893
Alignment explanation
Indices: 5667606--5674643 Score: 9321
Period size: 893 Copynumber: 7.9 Consensus size: 893
5667596 GTAGGGTTAG
* * * *
5667606 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
5667671 CTCGGGCATGTGCTAGTGCCGTAATTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* *
5667736 ACCTGGCCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * * *
5667801 ATGGGTGCTAGTACTTGACCCTTATATTGGCCCGCTATTCCTCATCAAACCTCAAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
5667866 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
5667931 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG-TTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
5667995 CATGCCAACAAAAATACAAGGATCACG-CTACCAAGTTTGGGGCCAAAAATCCTTTCC-AAAAAA
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAAAAA
* * * *
5668058 TTTTAAAAAATCCCAAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGATTCG-CATT
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC-TT
5668122 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
5668187 TTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCAATGGCTTGCG
584 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
5668252 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCTGCTCGTTTCGTCGGTTAGCTTAGGCAT
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * ** * * * *
5668317 ACGGACTTCATTCCCAGTCTAAGTTTGGACCAGACTGAGAGTTGCGTTAGCAGGATTGGCAGCAC
714 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCAC
** * * *
5668382 GTAGAGGCAGACCCAGCCGATCCCTGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGT
779 GTAGAGGGGGACCC-GCCGATCCCCGGCTTGTACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * *
5668447 GCGCTCGATTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAA
843 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
5668498 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* *
5668563 CTCGGTCATGTGCTGGTGCCGCATTTTTCTTCGAT-GGGGCACCATCGTCAGAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-TCGGGGCACCATCGTCGGAGCATCACCGGAG
* * * * *
5668627 AACCTGACC-AGTGGCATTAGGATTCCGATGATCGGGGGGGCCGGGGGGTGCGCGCACATGATGT
130 AACCTGACCGA-CGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGT
* * * *
5668691 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCTTCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * *
5668756 CACCCCCTTAAATAGCATTTGAGATGTTACAGGTTGGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
5668821 TGGGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
5668886 ATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAGAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * * *
5668951 AATTTTAAAAAATCACAAATCGCAAAAATTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
5669016 TGCCATGAAACTTCACGTGAAGGCTTAAGGGCCCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
5669081 ATTGGCACATAGAAATATGTAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGG
583 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * **
5669146 GCATCCCGCCTCTCTGGCCGACTTAGTGCCCGCCCGCCAGCCCGCCCGCTTGTTTTATCGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGT----G--C-CC-GCCCGCCCGCTCGTTTCGTCGGTTGG
* * ** * * *
5669211 CTTAGGCATACGGAGTTAATTCCTAGTCTAAGATCAGACTGGACTGAGGGCTACGGTAGCAGGAT
705 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGAT
* * * * * * *
5669276 TGGCAGCACGCAGAGGGGGACCCGATCGATCCTCGG-TT-TACGCATCCTGGCCCTCTGGCCAGC
770 CGGCAGCACGTAGAGGGGGACCCG-CCGATCCCCGGCTTGTA--CATCCCGCCCCTCTGGCCGGC
* * * * *
5669339 TGAGCGCTCGCACGTTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTGCCAGTCTAA
832 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
5669401 GCATATGTAGTTCATTCCCAGTCCAAGATCAGACTGGACCGAGGGTTGCGGA-AGCACATGCCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GACAGCACATGCTGG
* * *
5669465 GCTCGGGCATTTGCTGGTGCC-CTATTTTCCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGA
65 GCTCGGGCATGTGCTGGTGCCGC-ATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGA
* * * * *
5669529 GAACCTGATCGGCGGCATTGGGGTTTCGGCGATCGGGGGGCCGAGGAGGGTGTGCGCAAATGATG
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCG-GG-GGGTGTGCGCACATGATG
** * *
5669594 TGTAATGGGTGCTGGTA-TGTGGCCCTTATATTGGCCCCCTTTCCCTCATCAAACCTCGAGAACT
192 TGCGATGGGTGCTGGTACT-TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
*
5669658 CACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
5669723 AATGGGGACACTTTTTTCAAATGGTCACAATATCTTGTACACTTCAAGTTTTTAGCTCAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
5669788 TTTTGCATGCCAGA-AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
386 TTGTGCATGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
*
5669852 CAAAATTTTAAAAAATCCCGAACCGCT-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
450 AAAAATTTTAAAAAATCCCGAACCG-TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
*
5669916 GTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* ** *
5669981 TGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGC
579 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
5670046 TTGCGCATCCCGTCCCTCTGGCCAGCATAGTGCCCGCCCGCCCGCCCGTTCGTTTCGTCAGTTGA
644 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--C--TCGTTTCGTCGGTTGG
* * ** * *
5670111 CTTAGGCACACGGAGTTCATTCCCAATCTAAGATTGGACCGGACC-ACGGGTTGCGGTAGCAAGA
705 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA-GGGTTGCGGTAGCAGGA
* *
5670175 TCGGTAGCACGTAGAGGGGGACCCGGCCGATCCCCGGC-T-TAGCATCCCGTCCCTCTGGCCGGC
769 TCGGCAGCACGTAGAGGGGGACCC-GCCGATCCCCGGCTTGTA-CATCCCGCCCCTCTGGCCGGC
* * * * *
5670238 TGAGCACCTGCATGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
832 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
5670300 GCATATGGAGTTCATTCCCAATCTAAGATCAGGACCGGATCGAGGGTTGCGTTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCGGACCGAGGGTTGCGACAGCACATGCTGG
* * * * *
5670365 GCTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATTGTCAGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
*
5670430 AACCTGACCGACGGCATTGGGGTTCCGACGATTGTGGGGGCCGAGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCG-GGGGGTGTGCGCACATGATGT
* * * **
5670495 TCGATGGGTGCTGGTACTTGGCCCTTATATCGGCCCCCTATCCCTCTTCAAACCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
*
5670560 CAACCCCC-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAA
258 C-ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
5670624 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTGTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** * * * *
5670689 TGTGCATGCCAACAAAAA-ACAAGGATCGTGTCTACCAATTTTAGGGCCAAAACCCCTTCCAAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
5670753 AAATTTTAAAAAATCCCGAA-CGACAAAAAATTTCCAAAATCACGAAAAATAGAAAACGAGTCGT
452 AAATTTTAAAAAATCCCGAACCG-TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* **
5670817 CTTGCCATGAAACTTCATGTGAAGGCTTAAAAGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
5670882 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
581 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
5670947 GCGCATCCCATCTCTCTGGCCGGCGTAGAGCCCGCCTGCCCACTCATTTCATCGGTTGGCTTAGG
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * *
5671012 CATACGGAGTTCATTCCCAGTATAAGATCAGACCAGACCGAAGGTTGCCGCAGTAGGATCAGTAG
711 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAG
* * * * *
5671077 CGCGTAGAGTGGGACCCAGTCGATCCCCGGCTTGTACGTCCCGCCCCTCTGGCCGACTGAGCGCC
776 CACGTAGAGGGGGACCC-GCCGATCCCCGGCTTGTACATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * *
5671142 CACACGCTCGTTTCGTGGGTTGCCTTAGGGATACGAAGTTCATTCCCAGTCTAA
840 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
5671196 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * * *
5671261 CTCAGCCATATGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCGTCAGAGCATCACCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
*
5671326 ACCTGACTGACGGCATTGGGGTTCCGGA-GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCC-GACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * * **
5671390 CGATGGGTGCTGGTACTTGGCCGTTCTGTTAGCCCCCTATCCCTCATCAAACCTCAAGAACTCGT
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * * *
5671455 ACCCCCATT-AAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCAACTAAAGTGTTTGAAA
259 ACCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
5671519 TGGGGACACTTTTTT-AAATGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
5671583 GTGCATGCCAACAAAAATAAAAGGATCGCGTCTGCCAAGTTTGGGGCCAAAACTCCTTGC-AAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
** * ** * * * * *
5671647 AATTTTAAAAAATCTTGAACAGTAAAAAGTTTTGAAAATCGTCAATAATACAGAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
5671712 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
5671777 ATTGGCACACAGAAATAGGAAGATGTCCCTAAACCCACCTATCACCCTATCGATCCACGGCTTAC
583 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
5671842 TCATCCCGTCTCTCTGGCCGGCATAGT----GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* *
5671903 TACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGTAGGATCGGC-GAC
713 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAG-C
* * * * ** * *
5671967 ATGCAGAGGGGGACCCGACCGATCCCTGACTTGCGCATCCTGCCCCTCTAGCCGGCTGAGCGCCC
777 ACGTAGAGGGGGACCCG-CCGATCCCCGGCTTGTACATCCCGCCCCTCTGGCCGGCTGAGCGCCC
*
5672032 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
841 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
5672085 GCATACGGAGTTCATTCCCAATTTAAGGTCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * **
5672150 CTCGGGCATGTGCTCGTGTCGTATTTTTCTTCGTTGGGGAACCATCACCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
* *
5672215 ACCTGACCGACGGCATTTGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACAAGATGTGCG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
5672280 ATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCAACAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
*
5672345 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
5672410 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
5672475 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCATT-CGAAAAAA
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAAAAA
*
5672539 TTTTAAAAAATCCCGAACCGTAAAAA-TTTCAAAAAATTATGAAAAATAGAAAACGAGTCGTCTT
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTC-AAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
5672603 GCCAAGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * *
5672668 TTGGCATGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCTCGACTTGC-
584 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
5672732 CTATCCCATCTCTCTGGCAGACGTAGTGCTCGCCCTCCCGCCCGCTCGTTTCCTCGGTTGGGTTA
649 C-ATCCCGTCTCTCTGGCCGGCGTA--G-T-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * ** * * **
5672797 GGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAAATTGAGGGTTACGGCAGCAGGATCAAC
709 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGC
* * * * * *
5672862 AACACGTAGAGGGGGACTCGACTGATCCCCAGCTTGCACATCTCGCCCCTCTGGCCGGCTGAGAC
774 AGCACGTAGAGGGGGACCCG-CCGATCCCCGGCTTGTACATCCCGCCCCTCTGGCCGGCTGAG-C
* * * **
5672927 -CCC-TACGTTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCGTAGTCTAA
837 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * *
5672982 GCATACGGAGTTCATTCGCAGTCTAAGATCAGACCAAACTGAAGGTAGCGACAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * **
5673047 CTCGGGCATGTGCTGGTGCCACACTTTTCTTC-ACTGGGGCTACCA-CGTCGGAGCATCGTCGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGC-ACCATCGTCGGAGCATCACCGGA
* *
5673110 GAACCTGATCGACGGCATT--GG-TCTG-CGATC-GGGGGCCGGGGGCGT-TGCGCACATTGATG
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGG-GTGTGCGCACA-TGATG
*
5673169 TACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAA-AACT
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AAGAACT
* * *
5673233 CACACCCCCTTAAAGAGCATTTAAGATCTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
5673298 AATGGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
** * *
5673363 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTATTAAGTTTGGGACCAAAAATCCTTCCGAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * *
5673428 AAAATTTAAAAAAATCCCGAACTGCAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGT
451 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
5673493 CTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * * *
5673558 GCATTGGCATGCAAAAATATGAAGATGAGCCTAAACCCACCTACCACCGTATCGATCCACGGCTT
581 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* ** * * * * *
5673623 GTGCATCCCGTCTCTCTGGCCGATGTATTGCTTGCCCGCCCGTCTGCTTGTTTCATCGGTTGTCT
646 GCGCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * **
5673688 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGCGGCAATAGGATCG
707 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCG
* * ** * * ** * * * *
5673753 GTAGCACATAGTTGGGGACCCGGCCAATCCCTGGCTTGCGCATCCCGCCCCTTTGGTCGGTTAAG
772 GCAGCACGTAGAGGGGGACCC-GCCGATCCCCGGCTTGTACATCCCGCCCCTCTGGCCGGCTGAG
* * *
5673818 CACCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT-T-A
836 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
5673874 GCATACGGAGTGTCATTCCCAGTCTAAAGATCGGACCAGACCGAGGGTTGCCAACAGCACATGCT
1 GCATACGGAGT-TCATTCCCAGTCT-AAGATCGGACCGGACCGAGGGTTG-CGACAGCACATGCT
* * ** * *
5673939 AGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCAACGGGGCACCATCGTCGGAGCATCATCAG
63 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGG
* * * *
5674004 AGAACCTAACCGGCGGCATTGGGGTTCCGACG-TCGGGGGGGCCGGAGGGTGTACGCACATGATG
128 AGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATG
* * * * *
5674068 TGCGATGGATGCTAGTACTTGACCCTTATATTGGCCCCCTATCCCTGATTAAACCTCAAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * *
5674133 ACACCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTACCAGTAGCCATTAAAGTGTCTAAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
5674198 ATGGGGACACTTTTTTCAATTGGTCACAAAATCTAGTACACTTCGAGTTTTTAGCTGATTTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
5674263 TGTGGATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAATTTCTTTCG-AA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
5674327 AAATTTTAAAAAATCCTGAACC--ACAAAAGTTTCAAATATCGTGAAAAATAGAAAACGAGTCGT
452 AAATTTTAAAAAATCCCGAACCGTA-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* **
5674390 CTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACAAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
5674455 GCATTGGCACACAGAAAAATGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCATGGCTT
581 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
5674520 GCACATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTTGGTTGGCT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * *
5674585 TAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCA
707 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCA
5674644 TAAGATCAGA
Statistics
Matches: 5385, Mismatches: 661, Indels: 195
0.86 0.11 0.03
Matches are distributed among these distances:
887 2 0.00
888 161 0.03
889 422 0.08
890 194 0.04
892 177 0.03
893 1053 0.20
894 303 0.06
895 529 0.10
896 121 0.02
897 417 0.08
898 171 0.03
899 594 0.11
900 433 0.08
901 22 0.00
902 16 0.00
903 308 0.06
904 461 0.09
905 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGT
AGAGGGGGACCCGCCGATCCCCGGCTTGTACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5672095 original size:26 final size:26
Alignment explanation
Indices: 5672059--5672111 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5672049 GTTGACTTAG
5672059 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
5672085 GCATACGGAGTTCATTCCCAATTTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5672111 G
1 G
5672112 GTCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5672985 original size:26 final size:26
Alignment explanation
Indices: 5672956--5673008 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5672946 GTTGACTTAG
*
5672956 GCATACGGAGTTCATTCGTAGTCTAA
1 GCATACGGAGTTCATTCGCAGTCTAA
5672982 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCGCAGTCTAA
5673008 G
1 G
5673009 ATCAGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCGCAGTCTAA
Found at i:5673879 original size:24 final size:25
Alignment explanation
Indices: 5673850--5673896 Score: 87
Period size: 24 Copynumber: 1.9 Consensus size: 25
5673840 GTTGACTTAG
5673850 GCATACGGAGT-TCATTCCCAGTTA
1 GCATACGGAGTGTCATTCCCAGTTA
5673874 GCATACGGAGTGTCATTCCCAGT
1 GCATACGGAGTGTCATTCCCAGT
5673897 CTAAAGATCG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 11 0.50
25 11 0.50
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (25 bp):
GCATACGGAGTGTCATTCCCAGTTA
Found at i:5674650 original size:28 final size:28
Alignment explanation
Indices: 5674618--5674671 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
5674608 GTCTAAGATC
* *
5674618 AGATCGGACTGAGGGTTGCGGCAGCATA
1 AGATCAGACTGAGGGCTGCGGCAGCATA
*
5674646 AGATCAGACTGAGGGCTGCGGTAGCA
1 AGATCAGACTGAGGGCTGCGGCAGCA
5674672 CATGTTGGGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.39, T:0.17
Consensus pattern (28 bp):
AGATCAGACTGAGGGCTGCGGCAGCATA
Found at i:5676152 original size:717 final size:713
Alignment explanation
Indices: 5673874--5676170 Score: 3119
Period size: 717 Copynumber: 3.2 Consensus size: 713
5673864 TTCCCAGTTA
* * * * * **
5673874 GCATACGGAGTGTCATTCCCAGTCTAAAGATCGGACCAGACCGAGGGTTGCCAACAGCACATGCT
1 GCATACGGAGT-TCATTCTCAGTCT-AAGATCAGATCGGACTGAGGGTTG-CGGCAGCACATGCT
* * ** ** * ** * *
5673939 AGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCAACGGGGCACCATCGTCGGAGCATCATCAG
63 GGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCAAAGCATCGTCGG
* * * *
5674004 AGAACCTAACCGGCGGCATTGGGGTTCCGACG-TCGGGGGGGCCGGAGGGTGTACGCACATGATG
128 AGAACCTGACCGGAGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATG
* * * *
5674068 TGCGATGGATGCTAGTACTTGACCCTTATATTGGCCCCCTATCCCTGATTAAACCTCAAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCAAGAACTC
* * * *
5674133 ACACCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTACCAGTAGCCATTAAAGTGTCTAAA
257 ACACCCCCTTAAAGAGCATTTAAGATTTTACAAGTTTGCTGCCAGAAGCCATTAAAGTGTCT-AA
* * *
5674198 ATGGGGAC-ACTTTTTTCAATTGGTCACAAAATCTAGTACACTTCGAGTTTTTAGCTGATTTTTT
321 ATGGGGACAAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
5674262 TTGTGGATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAATTTCTTTCGAA
385 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCGAA
** * * *
5674327 AAATTTTAAAAAATCCTGAACC--ACAAAAGTTTCAAATATCGTGAAAAATAGAAAACGAGTCGT
450 AAATTAAAAAAAATCCCGAACCGTA-AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGT
* **
5674390 CTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACAAATTTACAAGCCATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
5674455 GCATTGGCACACAGAAAAATGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCATGGCTT
579 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTT
* * * * * *
5674520 GCACATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCTGCCCG--CCCGCTCGTTTCGTTGGTTGG
644 GCGCATCCCGTCTCTATGGCCGACGTAGTGCCCGCCCGCCCGCCCCCGCTCGTTTCGTCGGTTGG
5674583 CTTAG
709 CTTAG
5674588 GCATACGGAGTTCATTCTCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCATAAGATCAG
1 GCATACGGAGTTCATTCTCAGTCTAAGATCAGATCGGACTGAGGGTTGC-G--GC---AG--C--
* *
5674653 ACTGAGGGCTGCGGTAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTTGG
56 AC--A---------T-G--C----TGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGG
* *
5674718 GGCACCATCGCCAAAGCATCGCCGGAGAACCTGACC-GACGGCATTAGGGTTCCGACGATCGGGG
103 GGCACCATCGCCAAAGCATCGTCGGAGAACCTGACCGGA-GGCATTGGGGTTCCGACGATCGGGG
* * *
5674782 GGCCAGGGGG-GTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTTTATTGGCCCCCT
167 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * **
5674846 ATCTCTCATCAAACCTCAAGAACTCACACCCCCATAAAGAGCATTTCGGATTTTACAAGTTTGCT
232 ATCCCTCATTAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAAGTTTGCT
* * ** *
5674911 GCCA-ATAGCCATTAAAGTGTCTAGAATAGAGACAGTTTTTTCAAATGGTCACAAAATATTGTAC
297 GCCAGA-AGCCATTAAAGTGTCTA-AATGGGGACAACTTTTTCAAATGGTCACAAAATCTTGTAC
5674975 ACTTCGAGTTTTTAGCTGAATGTTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCA
360 ACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
*
5675039 AGTTTGGGGCCAAAATTCCTTCCGAAAAAATTTAAAAAAAATCCCGAGCCGTAAAAAGTTTCAAA
424 AGTTTGGGGCCAAAATTCCTTCCG-AAAAA-TTAAAAAAAATCCCGAACCGTAAAAAGTTTCAAA
* * *
5675104 AATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCGT
487 AATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
5675169 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCC
552 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCC
* * * *
5675234 ACCTACCACCCTATCGATCCA-CAGCTTACGCATCCCGT-TGGTATGGTCGACGTAGTGCCCGCC
617 ACCTACCACCCTATCGATCCATGA-CTTGCGCATCCCGTCT-CTATGGCCGACGTAGTGCCCGCC
5675297 CG-CCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAG
680 CGCCCGC-C-CCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
5675332 GCATACAGAGTTCATACTCAGTCTAAGATCCGATCGGACTGAGGGTTGCGGCAGCATATGCTGGG
1 GCATACGGAGTTCATTCTCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCACATGCTGGG
5675397 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCAAAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCAAAGCATCGTCGGAGA
5675462 ACCTGACCGGAGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGAGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
5675527 GATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCTTTAAACCTTAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCAAGAACTCACA
* *
5675592 -CCCCTTAAAGAGCATGTAAGATTTTACAAGTTTGCTGCCAGAAGCCATTAAAGTGCCTGAAATG
260 CCCCCTTAAAGAGCATTTAAGATTTTACAAGTTTGCTGCCAGAAGCCATTAAAGTGTCT-AAATG
5675656 GGGACAACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACAACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
5675721 GCATGCCAACAAAAATACAAGGATCACATCTGCCACGTTTGGGGGCAAAATTCCTTCCGAAAAAT
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCGAAAAAT
5675786 TAAAAAAAATTCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTG
454 TAAAAAAAA-TCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTG
* * *
5675851 CCATGAAACTTCACGTGAAAGCTTAAGGAAGCATTGTATGAATTTACAAGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
5675916 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTATGACTTGCGC
583 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGC
* *
5675981 ATCCCGTCTCTATGGCCGACGTAATGCCCGCCCGCCCGCCCACCCGCACGTTTCGTCGGTTGGCT
648 ATCCCGTCTCTATGGCCGACGTAGTGCCCGCCCGCCCG-CC-CCCGCTCGTTTCGTCGGTTGGCT
5676046 TAG
711 TAG
* * *
5676049 GCATATGGAGTTCATTCTCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCACATGCTGGA
1 GCATACGGAGTTCATTCTCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCACATGCTGGG
*
5676114 CTCGGGCATGTGCTGGTGCCATATTTTTCTTTGTCGGGGCACCATCGCCAAAGCATC
66 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCAAAGCATC
5676171 ACCGGAGNNN
Statistics
Matches: 1398, Mismatches: 130, Indels: 107
0.86 0.08 0.07
Matches are distributed among these distances:
711 1 0.00
712 20 0.01
713 12 0.01
714 12 0.01
715 10 0.01
716 308 0.22
717 324 0.23
718 78 0.06
719 1 0.00
720 1 0.00
721 2 0.00
722 1 0.00
723 2 0.00
732 2 0.00
733 1 0.00
734 1 0.00
735 1 0.00
736 1 0.00
737 1 0.00
738 236 0.17
739 104 0.07
740 21 0.02
741 185 0.13
742 1 0.00
743 1 0.00
744 71 0.05
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (713 bp):
GCATACGGAGTTCATTCTCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCAAAGCATCGTCGGAGA
ACCTGACCGGAGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCATTTAAGATTTTACAAGTTTGCTGCCAGAAGCCATTAAAGTGTCTAAATGGG
GACAACTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCGAAAAATTA
AAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATC
CCGTCTCTATGGCCGACGTAGTGCCCGCCCGCCCGCCCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:5678620 original size:26 final size:26
Alignment explanation
Indices: 5678586--5678637 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
5678576 GTTGACTTAG
* *
5678586 GCATTCGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5678612 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5678638 AATCGGATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5681369 original size:26 final size:26
Alignment explanation
Indices: 5681339--5681391 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5681329 GTTGACTTAG
* *
5681339 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
5681365 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
5681391 G
1 G
5681392 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:5681793 original size:26 final size:26
Alignment explanation
Indices: 5681763--5681815 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5681753 GTTGACTTAG
*
5681763 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
*
5681789 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
5681815 G
1 G
5681816 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAGTCTAA
Found at i:5681978 original size:424 final size:424
Alignment explanation
Indices: 5681148--5681989 Score: 1123
Period size: 424 Copynumber: 2.0 Consensus size: 424
5681138 CCCACCCGTC
5681148 CGCCCGTCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
1 CGCCCGTCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
* **
5681213 CCAGATCGAGGGTTACGACAGCAGGATCAATAGCACACAGAGGGGGATGCAACCGATCCCCGACT
66 CCAAATCGAGGGTTACGACAGCAGGATCAATAGCACACAGAGGGGGACACAACCGATCCCCGACT
* ** *
5681278 TGCACATCTCGCCCCTCTGGCCAGCTGGGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
131 TGCACATCCCGCCCCTCTGGCCAGCTAAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCAT
* *
5681343 ACGGAGTTCATTCCTAGTCTAAGCATACGGAGTCCATTCCCAGTCTAAGATCGAACCGGACCAAG
196 ACAGAGTTCATTCCCAGTCTAAGCATACGGAGTCCATTCCCAGTCTAAGATCGAACCGGACCAAG
* * * ** ** ** * *
5681408 GTTTACGGCATCACGTGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACC
261 GGTTACGGCAGCACATGCTGGAATCAAGCATGTGCTGGTGCCACATTTTACTTCACCAGGGCACC
*** * * * *
5681473 ATCGTTGGAGCATTACCGGAGAACCTGATCGGCGGCATTGGGGTTCCGATGATCGGGGGGCCGGC
326 ATCGCCAGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATAGGGGGGCCGGC
* * * * *
5681538 GGGTGTGCGTACATGATGTGCGATGGGTGCTGAG
391 GGGGGTACGCACATGATATGCGAAGGGTGCTGAG
* *
5681572 CGCCCG-CACGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGGTT-ATTCCCATTCTAAGATCG
1 CGCCCGTC-CGCTCATTTCGTCGGTTGGCTTAGGCATACGGA-GTTCATTCCCAATCTAAGATCA
* * ** * ** *
5681635 GACCAAA-CTGAGGGTTGCGACAGCAGGATCGATAGCACGTAGAGTGGGACACAGTCGATCCTCG
64 GACCAAATC-GAGGGTTACGACAGCAGGATCAATAGCACACAGAGGGGGACACAACCGATCCCCG
* ** * * *
5681699 GCTTGTGCATCCCGCCCCTCTGGTCGGCTAAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGG
128 ACTTGCACATCCCGCCCCTCTGGCCAGCTAAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGG
*
5681764 CATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTCCATTCCCAGTCTAAGATCGAATCGGACC
193 CATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTCCATTCCCAGTCTAAGATCGAACCGGACC
**
5681829 AAGGGTTGTGGCAGCACATGCTGGAATCAAGCATGTGCTGGTGCCACATTTTACTTCACCAGGGC
258 AAGGGTTACGGCAGCACATGCTGGAATCAAGCATGTGCTGGTGCCACATTTTACTTCACCAGGGC
** * * *
5681894 ACCATCGCCAGAGCATCGTCGGAGAACCTGGCCGGCGGCATTGGGGTTCTGACGATAGGGTGGCC
323 ACCATCGCCAGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATAGGGGGGCC
*
5681959 GGGGGGGGTACGCACATGATATGCGAAGGGT
388 GGCGGGGGTACGCACATGATATGCGAAGGGT
5681990 ACTGGTACTT
Statistics
Matches: 358, Mismatches: 57, Indels: 6
0.85 0.14 0.01
Matches are distributed among these distances:
423 2 0.01
424 353 0.99
425 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (424 bp):
CGCCCGTCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
CCAAATCGAGGGTTACGACAGCAGGATCAATAGCACACAGAGGGGGACACAACCGATCCCCGACT
TGCACATCCCGCCCCTCTGGCCAGCTAAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCAT
ACAGAGTTCATTCCCAGTCTAAGCATACGGAGTCCATTCCCAGTCTAAGATCGAACCGGACCAAG
GGTTACGGCAGCACATGCTGGAATCAAGCATGTGCTGGTGCCACATTTTACTTCACCAGGGCACC
ATCGCCAGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATAGGGGGGCCGGC
GGGGGTACGCACATGATATGCGAAGGGTGCTGAG
Found at i:5683412 original size:903 final size:904
Alignment explanation
Indices: 5681572--5700981 Score: 22419
Period size: 902 Copynumber: 21.6 Consensus size: 904
5681562 GGGTGCTGAG
* * * *
5681572 CGCCCGCACGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGGTT-ATTCCCATTCTAAGATCGG
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA-GTTCATTCCCAGTCTAAGATCAG
** * * * * * * * *
5681636 ACCAAACTGAGGGTTGCGACAGCAGGATCGATAGCACGTAGAGTGGGACAC-AGTCGATCCTCGG
65 ACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGA-CCGATCCCCGG
* * * * * *
5681700 CTTGTGCATCCCGCCCCTCTGGTCGGCTAAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGC
129 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * *
5681765 ATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTCCATTCCCAGTCTAAGATC-GAATCGGACC
194 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACC
* * ** ** * * * *
5681829 AAGGGTTGTGGCAGCACATGCTGGAATCAAGCATGTGCTGGTGCCACATTTTACTTCACCAGGGC
258 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGC
* * * * * *
5681894 ACCATCGCCAGAGCATCGTCGGAGAACCTGGCCGGCGGCATTGGGGTTCTGACGAT-AGGGTGGC
323 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGC
* * * *
5681958 CGGGGGGG-GTACGCACATGATATGCGAAGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTAT
388 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
5682022 CCTTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
453 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
5682087 CAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
518 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * ** * * *
5682152 TGGAGTGTTTAGCTGAATTTTTTTGTGCACACCAACATAAATACAAGAATCATGTCTACCAAGTT
583 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * * * *
5682217 TGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCAAATCGGAAAAAGTTTAAAAAATCG
648 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
5682282 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
713 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
5682347 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTA
778 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * ** * * *
5682412 CCATCCTATCGATCCACAGCTTGCGTATCTCGTCTCTCTGGCCGGTGTAGTACCCTCCCGTC
843 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * * *
5682474 CACCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATAGGGAGTTCATTCCCATTCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * *
5682539 CCGGTCCAAGGGTTGCGGCAGCAGGTTCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
66 CCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
* * * *
5682604 TGCGCATCCCGCCCCTCTGGTCGGTTGAGCGTCTGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
131 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * * * *
5682669 ACGGAATTCATTCCCAGTCTAAGCACACGGAGTTTATTCCCAATCTAAGATCAGATCGGATCGAG
196 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
* * * *
5682734 GGTTGCGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACC
261 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
* * * * **
5682799 ATCACCGAAGCATCGTCGGAGAACCTGATCGGTGGCATTGGGGTTTTGGCGATCGGGGGGGCCGG
326 ATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGG
* * *
5682864 GGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCATATCCC
391 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
5682929 TCATCAAACCTCGAGAATTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
456 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
5682994 TAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
521 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * *
5683059 AGTTTTTAGCTGAATTCTTTTGTGCATGCCAATAAAAATACAAGGATCATGTCTACGAAGTTTGG
586 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
5683124 GG-CAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
651 GGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
* *
5683188 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGTGTCCATTGTATGAA
716 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
*
5683253 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCA
781 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * *
5683318 CCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCAACGTAGTGCCTGCCCGCC
846 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * ** *
5683377 CGCCAGCCCGTTCGTTTCAACGGTTGGCTTAGGCATACGGAGTCCATTCCCAGTCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * ** * **
5683442 ACGGACTGAGGGTTGTGGCAGCAGGATCGACAGCACACAGACAGGGACCCGACCGATCCCCGGCT
66 CCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
* * * *
5683507 TGTGCATCCCGCCCCTCTGGCCGG-TCGATCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCA
131 TGCGCATCCCGCCCCTCTGGCCGGCT-GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * *
5683571 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAA
195 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
* * * * * * *
5683636 GGGTTGCAGTAGCACATGCTGGGCTCGAGAATGTGCTGGGGCCGTATTTTTCTTCACCGGGGCAC
260 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCAC
* * * * * * *
5683701 CATCACCGGAGCATCGCCGGAGAACCTGACCGGCGTCATTGGCGTTTCGACGATCGGGTGGGCC-
325 CATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCG
* *
5683765 GGGGGGTGTGCGCACATGATGTGGGAT-GGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCC
390 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
5683829 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCA
455 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * **
5683894 GTAGCAATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATTATCACAAAATCTTGTACACTTC
520 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
5683959 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATC-AGCCAAGCTT
585 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CCAAGTTT
* * * * * *
5684023 GGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGAAAAAAGTTTCAAAAATCAT
649 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
5684088 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
714 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * * *
5684153 AATTTACAAGCCATAAAAATGGCATTGGCATACAAAAATTTGAAGATATGCCTAAACCCACCTAC
779 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* ** * * *
5684218 CACCCTATCAATCCACATCTTGTGCATCCCGTCTCTCGGGCC-AGCGTAGTGCCCGACCGCC
844 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCC
* ** * *
5684279 TGCCCGGTCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * *
5684344 CCAGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGTAGAGGGGGACCCGACTGATCCTCGGCT
66 CCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
* ** * *
5684409 TGCGCATCCCGCCCCTCTAGCAAGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCAT
131 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
** * * * * *
5684474 ACAAAGTTCATTCCCAGTCTAATCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGAACTGAG
196 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
** * * * * *
5684539 GGTTGCAACAGCACCTGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCTGAGGCACC
261 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
* ** * * *
5684604 ATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCAGCGATCGGGGGGGCC-A
326 ATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGG
*
5684668 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCC
391 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * * * *
5684733 TCATCAAACCTCAAGAACGCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGTTGGCA-
456 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
5684797 TAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
521 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
5684862 AGCTTTTACCTGAATTTTTTTTATGCATGCCAA-AAAATATACAAGGATCACGTCTACCAAGTTT
586 AGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTT
* * * *
5684926 -GGGCCTAAAACTGCTTCCGAAAAAATTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCG
649 GGGGCC-AAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
*
5684990 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
713 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
5685055 GAATTTACAAGCCATAAAAATGGCATTGTCACGCAGAAATATGAAGATGTGCCTAAACCCATCTA
778 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * *
5685120 CCACCCTATCGATCCACGACTTGCGCATCCCGCCTCTCTGGCTGGCGTAGTGCCCGCCCGCC
843 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * * *
5685182 CGCCCGCCTGCTCGTTTCGTCGGTTGGCTTTGGCATACGGAGTTTAGTCCCAGTCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * *
5685247 CTGGACCGAGGGTTACGGCAGCAGGATCGGCAGCATGTAGAGGGTGACCCGA-TGATCCCCGGCT
66 CCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
* * * * *
5685311 TGTGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGTACGCTCATTTCATGGGTTGACTTAGGCAT
131 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * *
5685376 ACGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAG
196 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
* * * *
5685441 GGTTACGGCAGCACATGCTGGGCTCGGACATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACC
261 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
* * * * *
5685506 ATCACTGGAGCATCGTCGGAGAACCTAACCGGCGG-AGTTGAGGTTCCGACGATCGGGGGGG-CG
326 ATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCA-TTGGGGTTCCGGCGATCGGGGGGGCCG
5685569 GGGGGGT-TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
390 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
5685633 CTCATCAAACCTCGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCA
455 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
5685698 GTAGCCATTAAAGTGTCTGTAATGGGGATACTTTTTTGAAATGGTCACAAAATCTTGTACACTTC
520 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * **
5685763 GAGTTTTTAGCTGAATTTTTTTCTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTCA
585 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* *
5685828 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
650 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
* * * *
5685893 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGGTTAAGGGACCATTATATGA
715 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
5685958 ATTTACAAGCAATAAAAATGGCTTTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
780 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
5686023 ACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGT--------GCC
845 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * * * * * * *
5686075 TGCTCGCCCACTTGTTTCATCGGTTGGCTTTGGCATATGGAGTTCATTCCCAATCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * ** * * * * * ** * * *
5686140 TCGAACTAAGGGTTGCGGTAGTAGGATCGGCAGCACGTAAAGGGGGACCCGGTCGATCTCTGACT
66 CCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
*
5686205 TGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
131 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * * * **
5686270 ACGGAGTTCATTCCCAGTCTAAGCTTATGGAGTTCATTCCCAATCTAAGTTCAGACCAGTTCGAG
196 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
** *
5686335 GGTTGCGGCAGCACATGC-GGCGCTCTAGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCAC
261 GGTTGCGGCAGCACATGCTGG-GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCAC
* * * * * * * **
5686399 CATTGTCAGAGCATCGCCGGAGAACTTGGCCGGC-GCATTAGGGTTCCGATGAT--GGGGGGCC-
325 CATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCG
* * * ** *
5686460 AGGGGGTGTGTGCACATGATGTGCGATGGGTGCTAGTACTTGGCGTTTATATTGGCCCCTTATCC
390 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * * *
5686525 CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTCCAGGTTTGTTGTCA
455 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
5686590 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTC
520 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * * *
5686655 TAGTTTTTAGCTGAATTTTTTTGTGCCTACCAATAAAAATA-AAGGCATCATGTCTACCAAGTTT
585 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG-ATCACGTCTACCAAGTTT
* * * ** *
5686719 GGAGCTAAAACTCCTTTCAAAAAAATTTTAAAAAATCATGAACCGTAAAAAGTTTCAAAAATCAT
649 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
* * **
5686784 GAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGTACCATTGTACA
714 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
**
5686849 AATTTACAAGGTATAAAAATGGCATTGGCA--CATCGAAATATGAAGATGTG-CTGAAACCCACC
779 AATTTACAAGCCATAAAAATGGCATTGGCATGCA--GAAATATGAAGATGTGCCT-AAACCCACC
**
5686911 TACCACCCTATCGATCCACGGCTTGCGCATCCCG-CTTCTCTGGCCGGTGTAGT----GCCCGCC
841 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTC-TCTCTGGCCGACGTAGTGCCCGCCCGCC
* * * *
5686971 CGTCTGCCCGCTCGTTTCGTCGGTTGGGTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCTA-
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AG
** * * * * * ** *
5687035 ACTAGACCGAGGATTGTGGCAGCAGGACCGGCAGCACGCCGAGGGGGACCCGGTCGATCCCCAGC
65 ACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* *
5687100 TTGCGCATCCTTGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
130 TTGCGCATCC-CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
5687165 ATACGGAGTTCATTCCCAG--T---C-T----A----A-T---A-TC---G----GACCGGACCG
194 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
* ** *
5687204 AGGGTTGCGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGGTGCATTTTTCTTCGCCAGGGCA
259 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCA
** ** * * * * *
5687269 CCATCATCGGAGCATCACCGAAGAACCTGATCGGTGGCATTGGGGTTCTGGCAATCGGGGGGGCC
324 CCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC
5687334 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATC
389 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
5687398 CCTGATC-AACCTCGAGAACTCACACCCCCTTAAAGAGGATTTGAGATTTTACAGGTTTGCAGCC
454 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
5687462 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
519 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
5687527 CGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATATAAGGATGACGTCTACCAAGTTT
584 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * ** * *
5687592 TGGACCAAAACTCCTTCCAAAAGAATTTTAAAAAATCCTGAACCACAAAAAGTTTTAAAATTCGT
649 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
* *
5687657 GAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGGAGGCTTAAGGGACCATTGTATG
714 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* ** *
5687722 AATTTAGAAGCCATAAAAATTTCTTTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
779 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
5687787 CACCCTATCGATCCACGGCTTGCGCATCACGTCTCTCTCGCCGACGTAGTGCCCACCCGTC
844 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * *
5687848 CGCCCGCCCGCTCGTTTCGTCGGTCGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * *** * * * **
5687913 CCAGACCGAGGGTTGTGGTAGCAGGATCAACAGCACGTAGATGGGGA-CCTAGCCGATCCCTAGC
66 CCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGC
* * *
5687977 TTGCGCATCCCACCCCTCTTGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
130 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * *
5688042 TACAGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGGACCGA
195 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
* * *
5688107 GGGTTGTGGCAGCACATGCTGGGCTCGGGAATGTGCTGGTGCAGCATTTTTCTTCGCCGGGGCAC
260 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCAC
** * * *
5688172 CATCATCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTT-CGGCGATCGGGGGGGCC-
325 CATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCG
*
5688235 GGGGGGTGTGCGCACATGATGTTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
390 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * * *
5688300 CTCCTCAAACCTCGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCA
455 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
5688365 ATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
520 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
5688430 GAGTTTTTAGCTGAAATGTTTTTGTGCATGACAACAAAAATACAAGGATCACGTCTACCAAGTTT
585 GAGTTTTTAGCTG-AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* *
5688495 GGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
649 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
** * *
5688560 GAAAAATAGAGCACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCGTAAGGGACCACTGTATG
714 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * **
5688625 AATTTAGAAGCCATCAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
779 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * **
5688690 CACCCTATCGATCCAAGGCTTG-GCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCTACC
844 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * *
5688750 CGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * ** * *
5688815 CCGAAACAAGGGTTGCCGCAGCAGGATCGGTAGCACGCAGA-GGGGACCCGGTCGATCCACAGCT
66 CCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
* ** * * * *
5688879 TGCACATCTTGCCCCTCTGGCCGGCTGAGCGCTCGCGCGCTCATTTCGTGGTTTGACTTAGGCAT
131 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* *
5688944 ACAGAATTCATTCCCAG--T---C-TA---AG---ATT----G-----GATC--A---GACCGAG
196 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
* * * ** * *
5688983 GGTTGTGGCAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCATATTTTTCTTCGTCAGGGCACC
261 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
* * *
5689048 ATCGCCGGAGCATCGTTGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGA
326 ATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-
** *
5689113 GGGGCATGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
390 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
5689178 CTCATCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCT-CCA
455 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
5689241 GTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTCCAAATTGTCACAAAATCTTGTACACTTC
520 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
5689306 GAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTG
585 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* *
5689371 GGGCCAAAACTTCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
650 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
5689436 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
715 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *** * *
5689501 ATTTACAAGCCATAAAAATAGCATTGGCACATAGAAATATGAAGATCTGCCTAAACCCACCTAGC
780 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* ** * * ** * * *
5689566 ACCCTATCGATCCATGGCTTGCTTATCCCGTCTCTCTAGTCGACACAGTTTTCGCCCGGCTGTC
845 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG--AC-GTAGT-GCCCGCCCGCC
* * * * * * **
5689630 CGCCTGCTCACTCGTTTCATCTGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATTGGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
** * * * *** * * ** *
5689695 CCACACCAAGGGTTACGGTAGCAGGATCAACAGCACACAGAAGGGGACCCGGTCGATCCCCGACT
66 CCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
* * * *
5689760 TGGGCATCCCGTCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
131 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * *
5689825 ACGGAGTTCATTCCCAGTCTAAGCATTCGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
196 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
* * **
5689890 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGTATTTTTCTTCATCGGGGCACC
261 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
* ** * *
5689955 ATCACCGGAGCATCGTCGGAGAACCT-AGCCGATGGCATTGGGGTTACGGCGATCGGGGGGGCTG
326 ATCGCCGGAGCATCGTCGGAGAACCTGA-CCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGC-C
*
5690019 GTGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
389 G-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
5690084 CCCTCATTAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTGC
453 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
5690149 TAGTAGCCATTAAAGTGTCTGAAATGGGG-CACTTTTTCCAAATGGTCACAAAATCTTGTACACT
518 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
5690213 TCGAGTTTTTAGCTGAATGTTTTTGTACATGCCAACAAAAATACAAGGATGACGTCTACCAAGTT
583 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * * *
5690278 TGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCTCGAACCGCAAAATGTTTCAAAAATTG
648 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
5690343 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCT-
713 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG-TA
* * *
5690407 TTAATTTACAAGCCATAAAAATGGCATTGGCATGTAGCAATATGAAGATGTGCCTAAACCCACCT
777 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* *
5690472 ATCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCCG-CGTAGTGCCCGCCCGCC
842 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CCGACGTAGTGCCCGCCCGCC
* * * **
5690535 CGCTCGCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * * * * *
5690600 TCGGACTGACGGTTGCGGCAGCTGGATTGGCAGCACACATAGGGGGACCCGGA-TGATCCTCGGC
66 CCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCC-GACCGATCCCCGGC
* * * * * * *
5690664 TTGCGCATCTCACCACTCTGGCCGGCTGAGCACCTGCACGCTTGTTTCATGGGTTGACTTAGGCA
130 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
*
5690729 TACAGG-GTTCATTCCTAG--T---C-TA---AG---A-T--C-G-----GAT-----CGGACCG
195 TAC-GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
* * * *
5690767 AGGGTTGCAGCAGCACATACTGGGCTCGGGCATATGCTGGTACCGCATTTTTCTTCGCCGGGGCA
259 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCA
* ** * **
5690832 CCATTGCCAGG-GCATCACCGGAGAACCTGTA-CGGCGACATTGGGGTTCCTACGATC-GGGGGG
324 CCATCGCC-GGAGCATCGTCGGAGAACCTG-ACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
5690894 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
387 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
5690959 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAAGAGCATTTGAGATTTTATAGGTTTGCTG
452 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
5691024 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
517 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* ** *
5691089 TTCGTGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATATCTACCATGT
582 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* *
5691154 TTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCCTAAAAAGTTTCAAAAATC
647 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* *
5691219 ATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
712 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
5691284 TGAATTTACAAGCCATAAAAATGGCATTGGAATGCCGCAATATGAAGATGTGCCTAAACCCACCT
777 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * ** *
5691349 ACCACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGGTGTAGTGCCCGTCCGCC
842 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * * * *
5691412 CGCCCGCTCGCTCGTTTCGTCGTTTGGCTTAGTCATACAGAGTTCATTCCCAGTCTATGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * ** * * *
5691477 CCAGACCGAGGGTCGTGGTAGTAGGTTCGACAGCTCACAGAGGGGGACCC-AGCCGATCCCCGAC
66 CCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGC
* * * * *
5691541 TTGCGCATCCAGCCCCTTTGGCCGGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGTA
130 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* *
5691606 TACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGA
195 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
* * *
5691671 GGGTTGCGGCAGCACATGCTGGGCTC-GACAATGTGCTGGTGTCGCATTTTTCTTCGCTGGGGCA
260 GGGTTGCGGCAGCACATGCTGGGCTCGGGC-ATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCA
* *
5691735 CCAT--------CA---TCGGAGAACCTGACCGGCGGTATTGGGGTTCCGACGATC-GGGGGGCC
324 CCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC
* * * *
5691788 GGGGGGGGTGTACGCACATGATGTGCGATGGGTACTGGTATTTGGCCCTTATATTGGCCCCTTAT
389 -GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
5691853 TCCTCATCAAACCACGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
453 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
5691918 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAGTCTTGTACACT
518 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * *
5691983 TCGAGTTTTTAGCTGAATTTTTTTTTTCGTGCCAAAAAAAATACAAGGATCACATCTACCAAGTT
583 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * *
5692048 TGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
648 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
* * * *
5692113 TGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTCAAGGCTCAAGGGACCATTGTAT
713 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
5692178 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTCCCTAAACCCACCTA
778 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
*
5692243 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAATACCCGCCCGCCCGC
843 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGC
5692308 C
904 C
* * *
5692309 CGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTTCCAGTCTAAGAT
1 CG--C--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * **
5692374 CGGACCCGACCGAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGCCGATCCTT
62 CAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCC
* * * * * **
5692439 GACTTACACATCCCACCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTTTTGGGTTGACTTAG
127 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
5692504 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAAACTGAAC
192 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* * * * * * * * * *
5692569 TGAGGCTTGGGGTAGCACATGCTAGGCTC-GACTATGTACTGGTGCCACATTTTTCTTTGTCGGG
257 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC-ATGTGCTGGTGCCGCATTTTTCTTCGCCGGG
* * * * * * *
5692633 GCACCATCGCCAGAGCAACATCGGAGAACCTGACCGACGGCATTGGGGTTCCAGTGATC-AGGGG
321 GCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG
* * * *
5692697 GCCGGAGGGGTGTGCACACATGATGTGCGATAGGTGCTAGTACTTGGCCCTTATATTGGCCCCCT
386 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
5692762 ATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAA-AGGCATTTGAGATTTTACAGGTTTGC
451 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGC
* * * * *
5692826 TGCCAGTAGCCATGAAAGTGTCTGAAATGGGGAAACCTTTTTCAAATGGTCACAAAATCTTTTAT
515 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * **
5692891 ACTTC--G-----A---G--TTTTTTTGTGCATGCCATCAAAAATATAAGGATCACAACTACCAA
580 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * * * * ** * ****
5692944 GTTTGGGGCCAAAACTCCTTCTGAGACAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGT
645 GTTTGGGGCCAAAACTCCTTC-CAAAAAAAT-TTTAAAAAATCCCG-A-AC----CGTAAAAAGT
**** * ** * * * * * * * * **
5693009 TT-ATTTTTTTGTGCATTCCAACAAAAATACAAGGATC-ACAT-CTA-CAAAGTTTGGGGC-CAA
702 TTCA-AAAATCGTG-A--AAAATAGAAA-ACGA-G-TCGTCTTGCCATGAAA-CTT----CACGT
* ** ** ** ** * ** * * * * **** *
5693069 AAATCCTTCCGAAAAAATTTTTAAAAATCT-CGAA-CCACAAAAATTTTGAAAAATCATG-ACAA
755 GAAGGCTTAAGGGACCA-TTGTATGAATTTAC-AAGCCATAAAAA--TGGCATTGGCATGCAGAA
*** * * * ** *
5693131 ATA-GAAAACGAGTCGTCTTGCCATGAAACTTTTCGTGA--AGGCTTAAGGGA-CCATTGTATGA
816 ATATG--AA-GA-T-G---TGCC-T-AAAC-CCACCT-ACCA-CCCT-ATCGATCCA-CG---G-
* * **** ** ** * *
5693192 ATTTACAAGCCATAAAAATGGCAT-TGGCACGCAAAAATATAAAGATGTACCCAAACCCACCTAC
862 -CTTGC--G-CAT-CCCGTCTC-TCTGGC-CG-----ACGT--AG-TG--CCC--GCCC-GC--C
* * ** ** * ** *
5693256 CACCCTATTGATCCACGGCTTGCACATCCCGTCTCTCTGGC--CGGCGTAGTACCCGCCCGCTCA
1 CGCCC----G--CC-C-GC-T---CGTTTCGTCGGT-TGGCTTAGGC--A-TA--CG-GAGTTCA
** * * * * ** **
5693319 --CCC-G-C-CCGCTC--ACCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGG-AGTTCAT
47 TTCCCAGTCTAAGATCAGACCGGACCG--AGGGTTG-CGG-CAGC--AGG-AT-CGGTAG--CA-
* ***** * * ** * * ** * *** **
5693376 TCCCAGTCTAAGATCAGACCGGA-CCAAGGGTTGTGGTGCAGGATCGGTAGCACACAGAGGGGGA
101 -CGCAGAGGGGGACCCGACC-GATCC-CCGG--CT--TGC-GCATC--CCGC-CCCTCTGGCCG-
* * * ** ** *
5693440 GCTTACCGATCCTTGGCTTACGCATCCCGCCCCTC-T-GGCCGACTGAGCGCCCGCACGCTAATT
154 GCTGAGCG--CC--CGC--ACGC-T--CG--TTTCGTGGGTTGACTTA--G---GCA---T-A--
* *
5693503 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTC
197 -C----G--GAGTT---C--A---------TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * * * * *
5693568 TAAGATCGGACTGGACTGAGCGTTACGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCA
241 TAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * *
5693633 TTTTTCTTCGTCGAGGCACCAT---C---G----GTCGGAGAACCTGACCGGCGGCATTGAGGTT
306 TTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
** * * *
5693688 CCAACGATC-GGGGGGCC-AGGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTAGCCC
371 CCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
5693751 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
436 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * *
5693816 TTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGGCACTCTTTTCAAATGGTC
501 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
*
5693881 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCGCATGCCAACAAAAATACAAGG
566 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * * * * *
5693946 ATCACGTCTACCAAGTTTCGGGCCAAAATTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGAA
631 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTA
5694011 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
696 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * * *
5694076 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACGTAGAAATAAGAAGAT
761 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * *
5694141 GTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTACGCATCCCGTCTCTCTGGCCGATGT
826 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* *
5694206 AGTACCCGCTCGCC
891 AGTGCCCGCCCGCC
* * * *
5694220 CGCCTGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
** * * ** * *
5694285 CATGACCGAGGGTTGCAGCAGTAGGATCGACAGCACGCAGAGGAGGACCCGATC-AGTCCCCGGC
66 CCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGA-TCCCCGGC
* * * * * *
5694349 TTGTGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGTACACTCATTTCGTTGGTTGACTTAGGCA
130 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * * *
5694414 TACGGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAATCTAAGATCGGACCAGACCGA
195 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
* * * * * *
5694479 GGGTTACGGCAGCACATGCTGCGCTCGGGCATGTGCTGGTGCCACATTTTTATTCATCC-AGGCA
260 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GCCGGGGCA
* * * * * *
5694543 CCATCACCGGAGCATCGCCGAAGAACCTGACTGGCAGCATTGGGGTTCCGGCGATCGGGGGGGTC
324 CCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC
5694608 -GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
389 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
5694672 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCC
454 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
5694737 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
519 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
5694802 CGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAAATACAAGGATCACATCTACCAAGTT
584 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTT
* * ***
5694867 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAGAAGTTTTGGAAATCG
648 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
* *
5694932 TGAAAAATAGAAAACGAGTCATCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
713 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *** *
5694997 GAATTTACAAGCCCTAAAAATGGCATTGGCACATAGAAATACGAAGATGTGCCTAAACCCACCTA
778 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
** * * * *
5695062 CCACCAAATCGATCCACAGCTTG-GCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCTCGCT
843 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * * *
5695123 CGCCCG--C-C-CGTTTCGTCAGTTGGCTTAGGCATACGGAGTTGATTCCTAGTATAAGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* ** * * *
5695184 CCGGATCGAGGGTTGCGGCAGCAGGATCGACAAG-ATGCAGAGGGGGACCCGGCCGATCCCCGAC
66 CCGGACCGAGGGTTGCGGCAGCAGGATCG-GTAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* * * *
5695248 TTACGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACGCGCGTTTCGTGGGTTGACTTAAGCA
130 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
*
5695313 TACGAAGTTCATTCCCAGTC----C--A---AG---ATT----G-----GATCAGACC--A---A
195 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
* * * *
5695352 GGGTTGCGGTAGCACATGCTGGGCTGGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCAC
260 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCAC
* * * *
5695417 CATCGTCAGAGCATCGTCGAAGAACCTGACCGG-GCGCATTGGGGTTCCGACGATC----GGG-C
325 CATCGCCGGAGCATCGTCGGAGAACCTGACCGGCG-GCATTGGGGTTCCGGCGATCGGGGGGGCC
*
5695476 ---------AG-GC-C-----G-G-G--GGG-GCTGGTACTTGGCCCTTATATTGGCCCCCTATC
389 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
5695520 CCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAACATTTGAGATTTTACAAGTTTGCTGCC
454 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
5695584 AGTAGCCATTAAAGTGCCTGAAATGGGGACACTTTTTTCCAATGGTCACAAAATCTTGTACACTT
519 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
5695649 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGCTT
584 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * **
5695714 GGGGCTAAAACGAT-TTTCC-AAAAAATTTTAAAAAATCCCGAATCGTAAAAATTTTTGAAAATC
649 GGGGCCAAAAC--TCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* *
5695777 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGAGACCATTGTA
712 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
5695842 TGAATTTACAAGCCGTAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT
777 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * *
5695907 CCCAACCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCG--C-CC
842 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
** * * *
5695967 CGCCCGTTCGCTCGTTTCATCGGTTGACTTAGGCATACGGGAGTTCATTCCCAGTCTAACATCAG
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC-GGAGTTCATTCCCAGTCTAAGATCAG
* * * * ** * * * *
5696032 ACCGGATCGAGGGTTCCAGCAGTAAAATCGGCAGCATGTAGAGGGGGACCCGACCGATCCCCAGC
65 ACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* * *
5696097 TTGTGCATCCCGCCCCTCTGGCC-GATGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCA
130 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * *
5696161 TACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAA
195 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
* * * * *
5696226 GGGTTGTGGCAGCACATGCTGGCCTCGGGCATGTGCTGGTGCAGCATTTTGCTTCACCGGGGCAC
260 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCAC
* * * *
5696291 CATCGTCGGAGCATCG-CTGGAGAACCTGACTGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCT
325 CATCGCCGGAGCATCGTC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC
* *
5696355 GGGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATC
389 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
5696420 CCTCATCAAACCACGAGAACTCAC-CCTCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGTTGC
454 CCTCATCAAACCTCGAGAACTCACACC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * *
5696484 CAGTAGCCATTAAAGTGTCTAAAATGTGGAGACATTTTTCAAATGGTCACAAAATCTTGTACACT
518 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
5696549 TCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCATGTT
583 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * *
5696614 TGGGGCCAAAACTCCTTCAAAAAAAATTTTTAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCA
648 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
* *
5696679 TGAAAAATAGAAAACGAGTCGTCTTGCCATCAAACTTCACGTGACGGCTTAAGGGACCATTGTAT
713 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
5696744 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCAA
778 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * ** *
5696809 CCACCCTATCGATCCACGGCTTGTGCATTCCGTCTCTCTGGCCGGTGTAGTGCGCGCCCGCC
843 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * * * * **
5696871 CGCCTGCCGGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATTGGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * * * * * **
5696936 TCAGATCAAGGGTTGTGTCAGCAAGATCGGTAGCACGCA-AGAGGGACCTGATCGATCCCTAGCT
66 CCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
* * * * ** *
5697000 TGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCTGCACGCTCATTTTAATGGGTTGACTTACGCA
131 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCA
* ** * *
5697065 TACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGA
195 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
** * * *
5697130 GGGTTGCGGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCGTATTTTTCTTTGTCGGGGCAC
260 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCAC
* * * * * * *
5697195 CATCGCTGAAGCATCGTCAGAGAACCTGACCGGCGGCATTGCGGTTACGGCGATCGGGGGGTCGA
325 CATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGC-C
* * *
5697260 GGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTCCTTGGCCCATATATTGGCCCCCTATC
389 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
5697325 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
454 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
5697390 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTT
519 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
5697455 CGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAAATACAAGGATCACGTCTTCCAAGTT
584 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTT
* * * *
5697520 TGGGGCCAAAACTCTTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAGATCA
648 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
* *
5697585 TGAAATATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTAT
713 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
** *
5697650 GAATTTACAAGCCATAAAAATGGCATTGG-AACCTAGAAATATGAAGATGTGCCGAAACCCACCT
778 GAATTTACAAGCCATAAAAATGGCATTGGCATGC-AGAAATATGAAGATGTGCCTAAACCCACCT
* * * * ** *
5697714 ACCACCCTATCGATCCATGGCTCGCGTATCCCGTCTCTCTGGTCGGTGTAGTGCCCGCCCACC
842 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
** * * * * * *
5697777 CATCCGCCCGCTCATTTCATCAGTTGTCTTAGTCATACGGAGGTCATTCCCAGTCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
** * * * * * ** * * *
5697842 CCAAACCGAGGGTTGCAGTAGTAGGATCGATAGGACATAGAGGGGGATCTGACCGATCCCCTGCT
66 CCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
* * *
5697907 TGCGCATCCCGCCCCTCTGGCC-GATTAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCCT
131 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * *
5697971 ACGAAGTTCATTCCCAGT-T-----TA---AG---A-T--C-G----A-ACCAGA-C-TA---AG
196 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
* * ** * *
5698010 GGTTGCCGTAGCACATGCTGGGC-CTTAGCATGTGCTGGTACCACATTTTTCTTCGCCGGGG---
261 GGTTGCGGCAGCACATGCTGGGCTC-GGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCAC
* * * *
5698071 CA----C----CATCGTCAGAGAACCTGACCGGTGGCATTGGGGTTCCGGTGATCGGGCGAGG-C
325 CATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGG-GGGGCC
* * *
5698127 -TGGGGGTGTGCACACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
389 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * * *
5698191 CCTCATCAAATCTTGAGAACTCACACCCCCTTAAAAAGCATTTCAGAATTTACAGGTTTGCTGCC
454 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
5698256 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAGTCTTGTACACTT
519 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
5698321 TGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAGGGATCACGTCTACGAAGTTT
584 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
5698386 GTGGCAAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
649 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
*
5698451 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATG
714 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* ** *
5698516 AATTCACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCAACCTAC
779 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
*
5698581 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCG---G-C
844 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * * * * *
5698638 CACCTGCTCGCTCATTTCGTCGGTTGCCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT-AGG
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-G
*** ** ** * * * * *
5698702 GTAGGACTAAGGGTTATGGCAGCAGGATTGGTAGCACGTAGAGGGGGACCCGACTGACCCCCGAC
65 ACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* * * * * *
5698767 TTGCGCATCCCGCCTCTCTGGCTGGCTGAGCACCCACACGCTCGTTTCGTGGTTTGAATTAGGCA
130 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * * * *
5698832 TACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTATGATCAGACCAGACTGA
195 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
* * * * * *
5698897 GGGCTGCGGTAGCACATGCTGGGCTTGGTCTTGTGCTGGTGCCACATTTTTCATT-GCCGGGGCA
260 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCGCCGGGGCA
* * * ** *
5698961 CCATCGTCGGAGCATTGTCGGAGAACCTGACCAGCGGCATTGGGCATCCGACGATC-GGGGGGCC
324 CCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC
*
5699025 GGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
389 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
5699090 CCTCATCAAACCTCAAGAACTCACACCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
454 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
5699155 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTATTCAAATGGCCACAAAATCTTGTACACTT
519 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * * * *
5699220 CAAATTTTTGGCTGAATTTTTTTCTTCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTC
584 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * *
5699285 GAGGCTAAAACTCCTTTCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCAT
649 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
5699350 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
714 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
5699415 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCAAAACCAAACTAC
779 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * * * * *
5699480 CGCCCTGTCGATCCACTGCTTCCGCATCCCGCCTCTCTGGCCGGCGTA-T---TGCCCGCT
844 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * * * * *
5699537 CGCCCGCCCGCTCGCTTCGTTGGATGGCTTAAGCATACGGAGTTCATTCCCAGTCGAAGATCGGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * *
5699602 CCGGACCAAGGGTTGTGGCAGCAGGATTGGTAGCACGCAGAGGGGGACCTGGCCGATCCCCAGCT
66 CCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
* * * *
5699667 TACGCATCCCGCCCCTCTGGCCGGCTGAGAGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCAT
131 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * * * **
5699732 ACGGAGTTCATTCCCAGTCTGAGCATACGAAGTTCATTCCCAGTGTAAGATCGGACCAGATTGAG
196 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
* * * * *
5699797 GGTTGCAGCAGCACATGCTGGGCTCGTGCATGTGCTGGTGCAGCATTTTTCTTCACCGGGGAACC
261 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
* *
5699862 ATCGTCGGAGCATCG-CTGGAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATCGGGGGGGCC-
326 ATCGCCGGAGCATCGTC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCG
* * * * *
5699925 GGGGGGTGGGCGGACATGATGTGCGATGGATGCTAGTACTTGGCCATTATATTGGCCCCCTATCC
390 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
5699990 CTCATCAAACCTCGAGAACT--CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCA
455 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
**
5700053 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAAATTGTACACTTC
520 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
5700118 GAGTTTTTAGCTGAATTTTTTTTTGCATGCCAATAAAAATACAAGGATCCCGTCTACCAAGCTTG
585 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* ** ** **
5700183 GGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCTTGAACCACAAAAAGTTTTGAAAATCGTG
650 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
*
5700248 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTGCACGTGAAGGCTTAAGGGACCATTGTATGA
715 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
***
5700313 ATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACC
780 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
5700378 ACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGTCGACGTAGTGCCGGCCCGCC
845 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * * * * *
5700438 CTCTCGCCCGCTCGTTTCGTCGGTCGGCTTAGGCAGACGGAGTTCATTCCAAGTCTAAGATCGGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* ** * *** * *
5700503 CCGGATC-ATGGGTTGCAACAGTAGGAAT-GGTAGCATATAGAGGGGGATCCGACCGATCCCTGG
66 CCGGACCGA-GGGTTGCGGCAGCAGG-ATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGG
* * * *
5700566 CTTGCTCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCATGCCCGTTTCATGGGTTGACTTAGGC
129 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * ** * * * *
5700631 ACACAGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTTCGAGTCTAAGATCAGACTGGACTG
194 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
* * * * * * * * * * * *
5700696 AGGGTTGTGGCAGCCCATGCTAGGTTCAGGTAGGTGTTCGAGCCGCATTTATCTTCGTCGGGGCA
259 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCA
* * * * * *
5700761 CAATCACCAGAGCATCGTCGGAGAACCTGATCGGTGGCATTGGGGTTCCGGCGATCGAGGGGGCC
324 CCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC
* ** * **
5700826 GGGGGCGTGTGTACACATGATGAGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTTTATC
389 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
5700891 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAGCAATTGAGATTTTACAGGTTTGCTGCC
454 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
5700956 AGTAGCCATTAAAGTGTCTGAAATGG
519 AGTAGCCATTAAAGTGTCTGAAATGG
5700982 ATCACATCTA
Statistics
Matches: 15814, Mismatches: 2159, Indels: 1068
0.83 0.11 0.06
Matches are distributed among these distances:
844 7 0.00
845 1 0.00
846 223 0.01
847 164 0.01
848 139 0.01
849 97 0.01
851 1 0.00
852 2 0.00
853 1 0.00
854 1 0.00
857 2 0.00
858 1 0.00
859 2 0.00
860 5 0.00
861 118 0.01
862 51 0.00
863 1 0.00
864 1 0.00
865 256 0.02
866 213 0.01
868 46 0.00
869 12 0.00
871 93 0.01
872 17 0.00
873 478 0.03
874 136 0.01
875 406 0.03
876 337 0.02
877 648 0.04
878 108 0.01
879 162 0.01
880 103 0.01
881 91 0.01
882 4 0.00
883 10 0.00
884 7 0.00
885 3 0.00
886 4 0.00
887 5 0.00
888 52 0.00
889 9 0.00
890 10 0.00
891 24 0.00
892 595 0.04
893 591 0.04
894 207 0.01
895 12 0.00
896 116 0.01
897 466 0.03
898 14 0.00
899 1125 0.07
900 131 0.01
901 1690 0.11
902 1838 0.12
903 1672 0.11
904 748 0.05
905 425 0.03
906 366 0.02
907 169 0.01
908 85 0.01
909 345 0.02
910 42 0.00
911 183 0.01
912 45 0.00
913 2 0.00
914 18 0.00
915 18 0.00
916 9 0.00
917 2 0.00
918 1 0.00
919 4 0.00
922 6 0.00
923 2 0.00
924 13 0.00
925 7 0.00
926 6 0.00
927 3 0.00
929 2 0.00
931 5 0.00
933 6 0.00
934 8 0.00
935 8 0.00
936 3 0.00
937 4 0.00
938 2 0.00
940 2 0.00
941 3 0.00
942 5 0.00
943 16 0.00
944 4 0.00
945 4 0.00
946 2 0.00
947 11 0.00
948 5 0.00
949 5 0.00
950 4 0.00
951 10 0.00
952 15 0.00
953 11 0.00
954 9 0.00
955 14 0.00
956 9 0.00
957 6 0.00
958 4 0.00
959 5 0.00
960 9 0.00
961 3 0.00
962 2 0.00
964 16 0.00
965 3 0.00
966 1 0.00
967 3 0.00
969 5 0.00
970 3 0.00
971 1 0.00
972 3 0.00
973 5 0.00
974 9 0.00
976 2 0.00
978 2 0.00
979 3 0.00
980 10 0.00
981 4 0.00
982 1 0.00
983 9 0.00
984 5 0.00
985 2 0.00
986 1 0.00
988 3 0.00
989 5 0.00
990 7 0.00
991 6 0.00
992 2 0.00
993 4 0.00
995 1 0.00
996 1 0.00
997 1 0.00
998 2 0.00
999 10 0.00
1000 17 0.00
1001 23 0.00
1002 2 0.00
1003 3 0.00
1004 185 0.01
1005 52 0.00
1006 2 0.00
1007 1 0.00
1008 10 0.00
1009 2 0.00
1011 1 0.00
1012 3 0.00
1013 1 0.00
1014 10 0.00
1015 109 0.01
1016 60 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (904 bp):
CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
CCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
ATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGG
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
GGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
Found at i:5683604 original size:26 final size:26
Alignment explanation
Indices: 5683568--5683620 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5683558 GTTGACTTAG
5683568 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5683594 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5683620 G
1 G
5683621 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5684082 original size:26 final size:26
Alignment explanation
Indices: 5684040--5684090 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
5684030 AAAATCCTTT
* *
5684040 CGAAAAAATTTTAAAAAATCCTGAAC
1 CGAAAAAAGTTTAAAAAATCATGAAC
*
5684066 CGAAAAAAGTTTCAAAAATCATGAA
1 CGAAAAAAGTTTAAAAAATCATGAA
5684091 AAATAGAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.55, C:0.14, G:0.10, T:0.22
Consensus pattern (26 bp):
CGAAAAAAGTTTAAAAAATCATGAAC
Found at i:5685406 original size:26 final size:26
Alignment explanation
Indices: 5685372--5685424 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5685362 GTTGACTTAG
5685372 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5685398 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5685424 G
1 G
5685425 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5688075 original size:26 final size:26
Alignment explanation
Indices: 5688039--5688091 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5688029 GTTGACTTAG
5688039 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* * *
5688065 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
5688091 G
1 G
5688092 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:5691641 original size:26 final size:26
Alignment explanation
Indices: 5691605--5691655 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5691595 TGACTTAGGT
*
5691605 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
5691631 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
5691656 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:5692540 original size:26 final size:26
Alignment explanation
Indices: 5692504--5692556 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5692494 GTTGACTTAG
*
5692504 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5692530 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5692556 G
1 G
5692557 ATCAAACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5693323 original size:12 final size:12
Alignment explanation
Indices: 5693306--5693341 Score: 72
Period size: 12 Copynumber: 3.0 Consensus size: 12
5693296 CCGGCGTAGT
5693306 ACCCGCCCGCTC
1 ACCCGCCCGCTC
5693318 ACCCGCCCGCTC
1 ACCCGCCCGCTC
5693330 ACCCGCCCGCTC
1 ACCCGCCCGCTC
5693342 GTTTTGTCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.08, C:0.67, G:0.17, T:0.08
Consensus pattern (12 bp):
ACCCGCCCGCTC
Found at i:5693555 original size:26 final size:26
Alignment explanation
Indices: 5693519--5693571 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5693509 GTTGACTTAG
5693519 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5693545 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5693571 G
1 G
5693572 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5696194 original size:26 final size:26
Alignment explanation
Indices: 5696158--5696210 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5696148 GTTGACTTAG
5696158 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5696184 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5696210 G
1 G
5696211 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5697098 original size:26 final size:26
Alignment explanation
Indices: 5697062--5697114 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5697052 GTTGACTTAC
5697062 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5697088 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5697114 G
1 G
5697115 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5698866 original size:26 final size:26
Alignment explanation
Indices: 5698829--5698879 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
5698819 TTTGAATTAG
*
5698829 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
5698855 GCATAC-GAAGTTCATTCCCAATCTA
1 GCATACAG-AGTTCATTCCCAATCTA
5698880 TGATCAGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Done.