Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 42 of 129
Found at i:5699820 original size:899 final size:893
Alignment explanation
Indices: 5695487--5700981 Score: 6681
Period size: 899 Copynumber: 6.1 Consensus size: 893
5695477 GGCCGGGGGG
5695487 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTT
1 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
5695551 AAAGAA-CATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGACA
66 AAA-AAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
5695615 CTTTTTTCCAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
130 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGC
* * * *** *
5695680 CAAAAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCTAAAACGATTTTCCAAAAAATTTTAA
195 CAACAAAAATACAAGGATCACGTCTACCAAG-TTGAGGCAAAAACTCCTTTCAAAAAAATTTTAA
* * * **
5695745 AAAATCCCGAATCGTAAAAATTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
259 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
5695810 AACTTCATGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCGTAAAAATGGCATTGGCAC
324 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
** * * * *
5695875 GTAGAAATATGAAGATGTGCCTAAACCCACCTCCCAACCTATTGATCCACGGCTTGCGCATCCCG
389 ACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * ** * *
5695940 TCTCTCTGGCCGGCATAGTGCCCGCCCCGCCCGTTCGCTCGTTTCATCGGTTGACTTAGGCATAC
454 CCTCTCTGGTCGACGTAGTGCCCG--CCGCCCGCCCGCTCGTTTCGTCGG-TGGCTTAGGCATAC
* * * * * *** * ** * * *
5696005 GGGAGTTCATTCCCAGTCTAACATCAGACCGGATCGAGGGTTCCAGCAGTAAAATCGGCAGCATG
516 -GGAGTTCATTCCAAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCAGGATTGGTAGCACG
* * * *
5696070 TAGAGGGGGACCCGACCGATCCCCAGCTTGTGCATCCCGCCCCTCTGGCC-GATGAGCGCCCGCA
580 TAGAGGGGGA-CCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGAGCCCGAA
* * * *
5696134 CGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
644 CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
* ** ** * * * *
5696199 TCCCAGTCTAAGATCGGACTGGACCAAGGGTTGTGGCAGCACATGCTGGCCTCGGGCATGTGCTG
709 TCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTTGGTCATGTGCTG
* * * **
5696264 GTG-CAGCATTTTGCTTCACCGGGGCACCATCGTCGGAGCATCGCTGGAGAACCTGACTGGCAGC
774 GTGCCA-CATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGC-GGAGAACCTGACCGGTGGC
* **
5696328 ATTGGGGTTCCGGCGATCGGGGGGGCTGGGGGGGTGTGCGTACATGATGTGCGATGGGT
837 ATTGGGGTTCCGGCGATC-GGGGGGC-CGGGGGGTGTGCACACATGATGTGCGATGGGT
* *
5696387 GCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCACGAGAACTCAC-CCTCCCT
1 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC-CCCT
* * * * * *
5696451 TAAAGAGCGTTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAATGTGGAGA
65 TAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
5696516 CATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGC
130 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGC
* * * * *
5696581 CAATAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCC-TTCAAAAAAAATTTTT
195 CAACAAAAATACAAGGATCACGTCTACCAAG-TTGAGGCAAAAACTCCTTTC-AAAAAAATTTTA
*
5696645 AAAAATC-CTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
258 AAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
5696709 CAAACTTCACGTGACGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
322 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** * * * * *
5696774 ATGCAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGTGCATTC
387 ACACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * ** * *
5696839 CGTCTCTCTGGCCGGTGTAGTGCGCGCCCGCCCGCCTGCCGGCTCATTTCGTCGGTTGGCTTAGG
452 CGCCTCTCTGGTCGACGTAGTGCCCG-CCGCCCG-C--CC-GCTCGTTTCGTCGG-TGGCTTAGG
* * * * * * * *
5696904 CATACGAAGTTCATTCCCAA-TCTAAGATTGGATCAGATCAAGGGTTGTGTCAGCAAGATCGGTA
511 CATACGGAGTTCATT-CCAAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCAGGATTGGTA
* * * * * *
5696968 GCACGCA-AGAGGGACCTGATCGATCCCTAGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGC
575 GCACGTAGAGGGGGACC-GACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGAGC
* * * ** * *
5697032 CTGCACGCTCATTTTAATGGGTTGACTTACGCATACAGAGTTCATTCCCAGTCTAAGCATACGGA
639 CCGAACGCTC-GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAA
** **
5697097 GTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCAAG-CA
703 GTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCT-TGGTCA
** * * * *
5697161 TGTGCTGGTGCCGTATTTTTCTTTGTCGGGGCACCATCG-CTGAAGCATCGTCAGAGAACCTGAC
767 TGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTC-GGAGCATCG-CGGAGAACCTGAC
* * * * * *
5697225 CGGCGGCATTGCGGTTACGGCGATCGGGGGGTCGAGGGGGGGTGTGCGCACATGATGTGTGATGG
830 CGGTGGCATTGGGGTTCCGGCGATCGGGGGG-C--CGGGGGGTGTGCACACATGATGTGCGATGG
5697290 GT
892 GT
* *
5697292 GCTGGTCCTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
1 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
5697357 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
66 AAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
5697422 TTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC
131 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCC
* * * *
5697487 AAAAAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAACT-CTTTCCAAAAAAATTTTA
196 -AACAAAAATACAAGGATCACGTCTACCAAG-TTGAGGCAAAAACTCCTTT-CAAAAAAATTTTA
* * * * *
5697551 AAAAATCCCGAACCGTAAAAAGTTTCGAAGATCATGAAATATAGAAAACGAGTCGTCTTGCCATG
258 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
5697616 AAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGAA
323 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * *
5697681 C-CTAGAAATATGAAGATGTGCCGAAACCCACCTACCACCCTATCGATCCATGGCTCGCGTATCC
388 CAC-AGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* ** * * * * * *
5697745 CGTCTCTCTGGTCGGTGTAGTGCCCGCCCACCCATCCGCCCGCTCATTTCATCAGTTGTCTTAGT
452 CGCCTCTCTGGTCGACGTAGTGCCCG--C-CGC--CCGCCCGCTCGTTTCGTC-GGTGGCTTAGG
* * * ** * ** * * * *
5697810 CATACGGAGGTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCAGTAGTAGGATCGATAG
511 CATACGGAGTTCATTCCAAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCAGGATTGGTAG
* * * * * * *
5697875 GACATAGAGGGGGATCTGACCGATCCCCTGCTTGCGCATCCCGCCCCTCTGGCC-GATTAGCGCC
576 CACGTAGAGGGGGA-CCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGAGCC
*
5697939 CGCACGCTCGTTTCGTGGGTTGAC-T-----T----AG----------G-C----C-TACGAAGT
640 CGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGT
* * * * *
5697978 TCATTCCCAGTTTAAGATC-GAACCAGACTAAGGGTTGCCGTAGCACATGCTGGGCCTTAG-CAT
705 TCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCGGCAGCACATGCTGGG-CTTGGTCAT
*
5698041 GTGCTGGTACCACATTTTTCTTCGCCGGGGCACCATCGT-----CA-----GAGAACCTGACCGG
768 GTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCGGAGAACCTGACCGG
* * *
5698096 TGGCATTGGGGTTCCGGTGATCGGGCGAGG-CTGGGGGTGTGCACACATGATGTGCGATAGGT
833 TGGCATTGGGGTTCCGGCGATCGGG-G-GGCCGGGGGGTGTGCACACATGATGTGCGATGGGT
* *
5698158 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTTGAGAACTCACACCCCCTT
1 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
5698223 AAAAAGCATTTCAGAATTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
66 AAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
5698288 TTTTTTCAAATGGTCACAAAGTCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTGCATGCC
131 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCC
* * * * *
5698353 AACAAAAATACAGGGATCACGTCTACGAAGTTTGTGGCAAAAAATCCTTCCAAAAAAATTTTAAA
196 AACAAAAATACAAGGATCACGTCTACCAAG-TTGAGGCAAAAACTCCTTTCAAAAAAATTTTAAA
*
5698418 AAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
260 AAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
5698483 ACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCACA
325 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
*
5698548 CAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
390 CAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* * * * *
5698613 CTCTCTGGTCGACGTAGTGCCCGGCCACCTGCTCGCTCATTTCGTCGGTTGCCTTAGGCATACGG
455 CTCTCTGGTCGACGTAGTGCCC-GCCGCCCGCCCGCTCGTTTCGTCGG-TGGCTTAGGCATACGG
* * *** * *
5698678 AGTTCATTCCTAGTCTAAGATAGGGTAGGACTAAGGGTTATGGCAGCAGGATTGGTAGCACGTAG
518 AGTTCATTCCAAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCAGGATTGGTAGCACGTAG
* * * *
5698743 AGGGGGACCCGACTGA-CCCCCGACTTGCGCATCCCGCCTCTCTGGCTGGCTGAGCA-CCC-ACA
583 AGGGGGA-CCGACCGATCCCCAG-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAG-AGCCCGA-A
* *
5698805 CGCTCGTTTCGTGGTTTGAATTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
644 CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
* * * * *
5698870 TCCCAATCTATGATCAGACCAGACTGAGGGCTGCGGTAGCACATGCTGGGCTTGGTCTTGTGCTG
709 TCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTTGGTCATGTGCTG
* * *
5698935 GTGCCACATTTTTCATT-GCCGGGGCACCATCGTCGGAGCATTGTCGGAGAACCTGACCAGCGGC
774 GTGCCACATTTTTC-TTCGCCGGGGCACCATCGTCGGAGCATCG-CGGAGAACCTGACCGGTGGC
** *
5698999 ATTGGGCATCCGACGATCGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGT
837 ATTGGGGTTCCGGCGATCGGGGGGCC-GGGGGGTGTGCACACATGATGTGCGATGGGT
* *
5699057 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCGCCTT
1 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
5699122 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
66 AAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * * *
5699187 TTTATTCAAATGGCCACAAAATCTTGTACACTTCAAATTTTTGGCTGAATTTTTTTCTT-CATGC
131 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TTGCATGC
* *
5699251 CAACAAAAATACAAGGATCATGTCTACCAAGTTCGAGGCTAAAACTCCTTTCAAAAAAATTTTAA
195 CAACAAAAATACAAGGATCACGTCTACCAAGTT-GAGGCAAAAACTCCTTTCAAAAAAATTTTAA
*
5699316 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
259 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
5699381 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
324 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * * * * * *
5699446 GCAGAAATATGAAGATGTGCCAAAACCAAACTACCGCCCTGTCGATCCACTGCTTCCGCATCCCG
389 ACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * *
5699511 CCTCTCTGGCCGGCGTATTGCCCGCTCGCCCGCCCGCTCGCTTCGTTGGATGGCTTAAGCATACG
454 CCTCTCTGGTCGACGTAGTGCCCGC-CGCCCGCCCGCTCGTTTCGTCGG-TGGCTTAGGCATACG
* * *
5699576 GAGTTCATTCCCAGTCGAAGATCGGACCGGACCAAGGGTTGTGGCAGCAGGATTGGTAGCACGCA
517 GAGTTCATTCCAAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCAGGATTGGTAGCACGTA
* *
5699641 GAGGGGGACCTGGCCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGAGCCCGAACG
582 GAGGGGGACC-GACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGAGCCCGAACG
* * *
5699706 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTGAGCATACGAAGTTCATTC
646 CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTC
* * * * *
5699771 CCAGTGTAAGATCGGACCAGATTGAGGGTTGCAGCAGCACATGCTGGGC-TCGTGCATGTGCTGG
711 CCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTTGGT-CATGTGCTGG
* *
5699835 TG-CAGCATTTTTCTTCACCGGGGAACCATCGTCGGAGCATCGCTGGAGAACCTGACCGGTGGCA
775 TGCCA-CATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGC-GGAGAACCTGACCGGTGGCA
* ** *
5699899 TTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGGGCGGACATGATGTGCGATGGAT
838 TTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGT
* *
5699956 GCTAGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT--CACCCCCTT
1 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
5700019 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
66 AAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
**
5700084 TTTTTTCAAATGGTCACAAAAAATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCC
131 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCC
* * * *
5700149 AATAAAAATACAAGGATCCCGTCTACCAAGCTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAA
196 AACAAAAATACAAGGATCACGTCTACCAAG-TTGAGGCAAAAACTCCTTTCAAAAAAATTTTAAA
* ** **
5700214 AAATCTTGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
260 AAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
5700279 ACTGCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
325 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
* *
5700344 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
390 CAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* *
5700409 CTCTCTGGTCGACGTAGTGCCGGCCCGCCCTCTCGCCCGCTCGTTTCGTCGGTCGGCTTAGGCAG
455 CTCTCTGGTCGACGTAGTGCCCG-CCG--C-C-CGCCCGCTCGTTTCGTCGGT-GGCTTAGGCAT
* * *** * * *
5700474 ACGGAGTTCATTCCAAGTCTAAGATCGGACCGGATCATGGGTTGCAACAGTAGGAATGGTAGCAT
514 ACGGAGTTCATTCCAAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCAGGATTGGTAGCAC
* ** * * *
5700539 ATAGAGGGGGATCCGACCGATCCCTGGCTTGCTCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
579 GTAGAGGGGGA-CCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGAGCCCGA
* * * * *
5700604 ATGCCCGTTTCATGGGTTGACTTAGGCACACAGAGTTCATTCCCAGTCTAAGCATACAAAGTTCA
643 ACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA
* * ** * * * *
5700669 TTTCGAGTCTAAGATCAGACTGGACTGAGGGTTGTGGCAGCCCATGCTAGG-TTCAGGT-AGGTG
708 TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTT--GGTCATGTG
* * * * * * * ** * *
5700732 TTCGAGCCGCATTTATCTTCGTCGGGGCACAATCACCAGAGCATCGTCGGAGAACCTGATCGGTG
771 CTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCG-CGGAGAACCTGACCGGTG
* *
5700797 GCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGCGTGTGTACACATGATGAGCGATGGGT
835 GCATTGGGGTTCCGGCGATCG-GGGGGCCGGGGG-GTGTGCACACATGATGTGCGATGGGT
** *
5700858 GCTGGTACTTGGCCCTTATATTGGCCCTTTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
1 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
5700923 AAAAAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
66 AAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
5700982 ATCACATCTA
Statistics
Matches: 3992, Mismatches: 485, Indels: 232
0.85 0.10 0.05
Matches are distributed among these distances:
860 6 0.00
861 109 0.03
862 26 0.01
863 3 0.00
864 1 0.00
865 253 0.06
866 216 0.05
868 36 0.01
869 1 0.00
870 2 0.00
872 2 0.00
874 2 0.00
878 1 0.00
879 92 0.02
880 3 0.00
882 1 0.00
883 1 0.00
884 1 0.00
885 1 0.00
887 5 0.00
888 91 0.02
889 3 0.00
893 2 0.00
895 2 0.00
896 2 0.00
897 385 0.10
898 20 0.01
899 883 0.22
900 88 0.02
901 686 0.17
902 112 0.03
903 70 0.02
904 268 0.07
905 229 0.06
906 336 0.08
907 46 0.01
908 3 0.00
909 1 0.00
910 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCC
AACAAAAATACAAGGATCACGTCTACCAAGTTGAGGCAAAAACTCCTTTCAAAAAAATTTTAAAA
AATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
AGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCC
TCTCTGGTCGACGTAGTGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTGGCTTAGGCATACGGAGT
TCATTCCAAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCAGGATTGGTAGCACGTAGAGG
GGGACCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGAGCCCGAACGCTCGT
TTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGT
CTAAGATCAGACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTTGGTCATGTGCTGGTGCCAC
ATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCGGAGAACCTGACCGGTGGCATTGGGGTT
CCGGCGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGT
Found at i:5703709 original size:26 final size:26
Alignment explanation
Indices: 5703679--5703730 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
5703669 TTGACTTAGA
5703679 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
*
5703705 CATACAGAGTTCATTGCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
5703731 ATCGAACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:5704195 original size:26 final size:26
Alignment explanation
Indices: 5704141--5704197 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
5704131 ACTCCATCCA
* ***
5704141 AAAAAGTTTTAAAAATCCCGAACCGT
1 AAAAAGTTTCAAAAATCCCGAAAAAT
*
5704167 AAAAAGTTTCAAAAATCCTGAAAAAT
1 AAAAAGTTTCAAAAATCCCGAAAAAT
5704193 AAAAA
1 AAAAA
5704198 ACGAGTCGTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.56, C:0.14, G:0.09, T:0.21
Consensus pattern (26 bp):
AAAAAGTTTCAAAAATCCCGAAAAAT
Found at i:5705555 original size:57 final size:57
Alignment explanation
Indices: 5705492--5705886 Score: 533
Period size: 57 Copynumber: 6.7 Consensus size: 57
5705482 TCTTGTATAG
*
5705492 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATAATTTTTT-GAAATTTATTTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAAT-ATTTTTTGGAAATTTATTTTTAA
*
5705549 TGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
* *
5705606 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTGGAAA-TTT-ATTTTTAA
5705666 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
* *
5705723 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAATCCCTTTTTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAA-------TATTTTTTGGAAATTTATTTTTAA
* * * * *
5705787 GGAAAATGGATACTTTCAACTTTTCTCTAAAAATATTTTTCGAAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAA-TTT-ATTTTTAA
* *
5705846 GGAAGATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTT
5705887 TTGGAACTTT
Statistics
Matches: 304, Mismatches: 19, Indels: 28
0.87 0.05 0.08
Matches are distributed among these distances:
56 10 0.03
57 127 0.42
58 17 0.06
59 57 0.19
60 41 0.13
64 50 0.16
65 2 0.01
ACGTcount: A:0.34, C:0.12, G:0.08, T:0.45
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
Found at i:5705702 original size:117 final size:116
Alignment explanation
Indices: 5705492--5705905 Score: 580
Period size: 117 Copynumber: 3.5 Consensus size: 116
5705482 TCTTGTATAG
* * * *
5705492 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATAATTTTTT-GAAA-TTTATTTTTTATGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTTATTTTTAAGGAAAA
5705555 TTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
66 TTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
*
5705606 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTTGATTTTCAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTT-ATTTTTAAGGAAA
5705671 ATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
65 ATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
* * * *
5705723 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTTTTTTGAAAATTTATTTTTAAG
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA-----TATTTTTTTGGAAATTTTATTTTTAAG
* * * * *
5705788 GAAAATGGATACTTTCAACTTTTCTCTAAAAATATTTTTCGAAAATTTTGATTTTCAA
61 GAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAA-TTT-ATTTTTAA
* *
5705846 GGAAGATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGGAACTTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTGGAAATTTT-ATTTTTA
5705906 TTTAAAGAAA
Statistics
Matches: 267, Mismatches: 21, Indels: 18
0.87 0.07 0.06
Matches are distributed among these distances:
114 40 0.15
115 4 0.01
116 3 0.01
117 94 0.35
118 1 0.00
119 13 0.05
120 7 0.03
121 49 0.18
122 18 0.07
123 38 0.14
ACGTcount: A:0.33, C:0.12, G:0.09, T:0.46
Consensus pattern (116 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTTATTTTTAAGGAAAA
TTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGGAAATTTATTTTTAA
Found at i:5705945 original size:16 final size:15
Alignment explanation
Indices: 5705925--5705987 Score: 63
Period size: 16 Copynumber: 3.9 Consensus size: 15
5705915 AATAGAATAA
5705925 TAAAAAAAATAAAAG
1 TAAAAAAAATAAAAG
* *
5705940 TGAAAATAAATAAAAA
1 T-AAAAAAAATAAAAG
*
5705956 TAAAAACAAAGAAAAG
1 TAAAAA-AAATAAAAG
5705972 TAAAACAAAAATAAAA
1 T-AAA-AAAAATAAAA
5705988 ATAAGGTAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
15 5 0.13
16 21 0.55
17 10 0.26
18 2 0.05
ACGTcount: A:0.78, C:0.03, G:0.06, T:0.13
Consensus pattern (15 bp):
TAAAAAAAATAAAAG
Found at i:5705998 original size:27 final size:28
Alignment explanation
Indices: 5705951--5706004 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
5705941 GAAAATAAAT
5705951 AAAAATAAAAACAAAGAAAAG-TAAAAC
1 AAAAATAAAAACAAAGAAAAGATAAAAC
* * *
5705978 AAAAATAAAAATAAGGTAAAGATAAAA
1 AAAAATAAAAACAAAGAAAAGATAAAA
5706005 AATATTAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 18 0.78
28 5 0.22
ACGTcount: A:0.76, C:0.04, G:0.09, T:0.11
Consensus pattern (28 bp):
AAAAATAAAAACAAAGAAAAGATAAAAC
Found at i:5706054 original size:15 final size:15
Alignment explanation
Indices: 5705923--5706070 Score: 67
Period size: 15 Copynumber: 9.6 Consensus size: 15
5705913 AAAATAGAAT
5705923 AATAAAAA-AAATAA
1 AATAAAAACAAATAA
* *
5705937 AAGTGAAAATAAATAAA
1 AA-TAAAAACAAAT-AA
*
5705954 AATAAAAACAAAGAA
1 AATAAAAACAAATAA
5705969 AAGT-AAAAC--A-AA
1 AA-TAAAAACAAATAA
* *
5705981 AATAAAAATAAGGTAA
1 AATAAAAACAA-ATAA
* *
5705997 AGATAAAAA-ATATTA
1 A-ATAAAAACAAATAA
*
5706012 AATAAAACCTAATCTAATAA
1 AAT-AAA---AA-CAAATAA
5706032 ATATAAAAACAAATAA
1 A-ATAAAAACAAATAA
*
5706048 AATAAAAATAAATAA
1 AATAAAAACAAATAA
5706063 AA-AAAAAC
1 AATAAAAAC
5706071 CTGGAGCGGC
Statistics
Matches: 102, Mismatches: 15, Indels: 34
0.68 0.10 0.23
Matches are distributed among these distances:
11 1 0.01
12 8 0.08
13 1 0.01
14 9 0.09
15 35 0.34
16 24 0.24
17 13 0.13
18 2 0.02
20 7 0.07
21 2 0.02
ACGTcount: A:0.74, C:0.05, G:0.05, T:0.17
Consensus pattern (15 bp):
AATAAAAACAAATAA
Found at i:5706966 original size:18 final size:18
Alignment explanation
Indices: 5706927--5707020 Score: 50
Period size: 18 Copynumber: 5.2 Consensus size: 18
5706917 AGAGAAGATA
* *
5706927 ATAAAAAAA-AATTATAGG
1 ATAAAAAAATAATAATA-T
5706945 ATAAAAAAATAATAATAT
1 ATAAAAAAATAATAATAT
** *
5706963 ATAATTAAATAAATAA-AA
1 ATAAAAAAAT-AATAATAT
* * *
5706981 ATACAAAAATAAATAAAAC
1 ATAAAAAAAT-AATAATAT
*
5707000 A-AAAAATAATAAAAATAT
1 ATAAAAA-AATAATAATAT
5707018 ATA
1 ATA
5707021 TTATTAATAA
Statistics
Matches: 58, Mismatches: 13, Indels: 9
0.73 0.16 0.11
Matches are distributed among these distances:
18 41 0.71
19 17 0.29
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.23
Consensus pattern (18 bp):
ATAAAAAAATAATAATAT
Found at i:5706976 original size:22 final size:22
Alignment explanation
Indices: 5706945--5706997 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
5706935 AAATTATAGG
* * * *
5706945 ATAAAAAAATAATAATATATAA
1 ATAAATAAATAAAAATACAAAA
*
5706967 TTAAATAAATAAAAATACAAAA
1 ATAAATAAATAAAAATACAAAA
5706989 ATAAATAAA
1 ATAAATAAA
5706998 ACAAAAAATA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.25
Consensus pattern (22 bp):
ATAAATAAATAAAAATACAAAA
Found at i:5707003 original size:15 final size:15
Alignment explanation
Indices: 5706973--5707013 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
5706963 ATAATTAAAT
*
5706973 AAATAAA-AATACAA
1 AAATAAATAAAACAA
5706987 AAATAAATAAAACAA
1 AAATAAATAAAACAA
5707002 AAA-ATAATAAAA
1 AAATA-AATAAAA
5707014 ATATATATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 8 0.33
15 16 0.67
ACGTcount: A:0.80, C:0.05, G:0.00, T:0.15
Consensus pattern (15 bp):
AAATAAATAAAACAA
Found at i:5707030 original size:52 final size:53
Alignment explanation
Indices: 5706947--5707047 Score: 127
Period size: 52 Copynumber: 1.9 Consensus size: 53
5706937 ATTATAGGAT
*
5706947 AAAAAAATAATAATATATAATTAAATAAATAA-AAATACAAAAATAAATAAAACA
1 AAAAAAATAAAAATATATAATT-AATAAATAATAAATA-AAAAATAAATAAAACA
* *
5707001 AAAAATAATAAAAATATAT-ATT-ATTAATAATAAATAAATAATAAATA
1 AAAAA-AATAAAAATATATAATTAATAAATAATAAATAAAAAATAAATA
5707048 CATAGGATAT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
52 17 0.40
53 5 0.12
54 8 0.19
55 12 0.29
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (53 bp):
AAAAAAATAAAAATATATAATTAATAAATAATAAATAAAAAATAAATAAAACA
Found at i:5707077 original size:12 final size:12
Alignment explanation
Indices: 5707060--5707094 Score: 56
Period size: 11 Copynumber: 3.1 Consensus size: 12
5707050 TAGGATATAC
5707060 ATAAAATATAAA
1 ATAAAATATAAA
5707072 ATAAAATA-AAA
1 ATAAAATATAAA
5707083 ATAAAA-ATAAA
1 ATAAAATATAAA
5707094 A
1 A
5707095 ATGACAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 13 0.59
12 8 0.36
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (12 bp):
ATAAAATATAAA
Found at i:5707085 original size:6 final size:6
Alignment explanation
Indices: 5707062--5707096 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
5707052 GGATATACAT
5707062 AAAATA TAAAAT- AAAATA AAAATA AAAATA AAAAT
1 AAAATA -AAAATA AAAATA AAAATA AAAATA AAAAT
5707097 GACAAAGATA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.19
6 17 0.63
7 5 0.19
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
AAAATA
Found at i:5707475 original size:1 final size:1
Alignment explanation
Indices: 5707460--5707506 Score: 58
Period size: 1 Copynumber: 47.0 Consensus size: 1
5707450 ATAGAGGCAA
* * * *
5707460 TTTTTGTTTTGTTTTTTTTTTTTTTTTGTTTTTTTTGTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
5707507 AAATGATCAA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
1 38 1.00
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (1 bp):
T
Found at i:5707475 original size:104 final size:98
Alignment explanation
Indices: 5707256--5707486 Score: 288
Period size: 104 Copynumber: 2.3 Consensus size: 98
5707246 CAACATTTTC
5707256 ATTTTTTTTTGTTTTTTTGTTTTTTTTTTACCAAAGCTCCTTTAAACAGAGGCTCAACGACTTTG
1 ATTTTTTTTTG-TTTTTTGTTTTTTTTTTACCAAAGCTCCTTTAAACAGAGGCTCAACGACTTTG
* *
5707321 AGAAACATAAATAAAGCTCCTCTAAATAGAGGTA
65 AGAAACATAAACAAAGCTCCTCTAAATAGAGGCA
* * * * *
5707355 ACTTTTTTTCAT-TTTTTTGCTTTTTTTTAAATTGATCAAAGCT-CTTCTAAGCAGAGGTTCAAT
1 A-TTTTTTT-TTGTTTTTTG-TTTTTTTT---TT-ACCAAAGCTCCTT-TAAACAGAGGCTCAAC
5707418 GACTTTGAGAAACATAAACAAAGCTCCTCTAAATAGAGGCA
58 GACTTTGAGAAACATAAACAAAGCTCCTCTAAATAGAGGCA
5707459 ATTTTTGTTTTGTTTTTT-TTTTTTTTTT
1 ATTTTT-TTTTGTTTTTTGTTTTTTTTTT
5707487 GTTTTTTTTG
Statistics
Matches: 114, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
99 10 0.09
100 15 0.13
101 1 0.01
102 8 0.07
103 11 0.10
104 69 0.61
ACGTcount: A:0.28, C:0.14, G:0.13, T:0.46
Consensus pattern (98 bp):
ATTTTTTTTTGTTTTTTGTTTTTTTTTTACCAAAGCTCCTTTAAACAGAGGCTCAACGACTTTGA
GAAACATAAACAAAGCTCCTCTAAATAGAGGCA
Found at i:5707486 original size:17 final size:17
Alignment explanation
Indices: 5707460--5707504 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
5707450 ATAGAGGCAA
*
5707460 TTTTTGTTTTGTTTTTT
1 TTTTTTTTTTGTTTTTT
5707477 TTTTTTTTTTGTTTTTT
1 TTTTTTTTTTGTTTTTT
5707494 TTGTTTTTTTT
1 TT-TTTTTTTT
5707505 TTAAATGATC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 18 0.69
18 8 0.31
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (17 bp):
TTTTTTTTTTGTTTTTT
Found at i:5707486 original size:22 final size:21
Alignment explanation
Indices: 5707460--5707506 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
5707450 ATAGAGGCAA
*
5707460 TTTTTGTTTTGTTTTTTTTTTT
1 TTTTTGTTTT-TTTTGTTTTTT
5707482 TTTTTGTTTTTTTTGTTTTTT
1 TTTTTGTTTTTTTTGTTTTTT
5707503 TTTT
1 TTTT
5707507 AAATGATCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 14 0.58
22 10 0.42
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (21 bp):
TTTTTGTTTTTTTTGTTTTTT
Found at i:5707543 original size:123 final size:123
Alignment explanation
Indices: 5707357--5707605 Score: 394
Period size: 123 Copynumber: 2.0 Consensus size: 123
5707347 TAGAGGTAAC
* *
5707357 TTTTTTTCATTTTTTTGCTTTTTTTTAAATTGATCAAAGCTCTTCTAAGCAGAGGTTCAATGACT
1 TTTTTTTCATTTTTTTGCTTTTTTTTAAATTGATCAAAGCTCCTCTAAGCAGAGGCTCAATGACT
5707422 TTGAGAAACATAAACAAAGCTCCTCTAAATAGAGGCAA-TTTTTGTTTTGTTTTTTTTT
66 TTGAGAAACATAAACAAAGCTCCTCTAAATAGAGGCAACTTTTTGTTTT-TTTTTTTTT
** *
5707480 TTTTTTTGTTTTTTTTGTTTTTTTTTTAAA-TGATCAAAGCTCCTCTAAGCAGAGGCTCAATGAC
1 TTTTTTTCATTTTTTTG-CTTTTTTTTAAATTGATCAAAGCTCCTCTAAGCAGAGGCTCAATGAC
**
5707544 TTTGAGAAACATAAATGAAGCTCCTCTAAATAGAGGCAACTTTTTTGTTTTTTTTTTTTT
65 TTTGAGAAACATAAACAAAGCTCCTCTAAATAGAGGCAAC-TTTTTGTTTTTTTTTTTTT
5707604 TT
1 TT
5707606 AAAAAACTCC
Statistics
Matches: 116, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
123 84 0.72
124 22 0.19
125 10 0.09
ACGTcount: A:0.26, C:0.13, G:0.13, T:0.48
Consensus pattern (123 bp):
TTTTTTTCATTTTTTTGCTTTTTTTTAAATTGATCAAAGCTCCTCTAAGCAGAGGCTCAATGACT
TTGAGAAACATAAACAAAGCTCCTCTAAATAGAGGCAACTTTTTGTTTTTTTTTTTTT
Found at i:5707669 original size:41 final size:42
Alignment explanation
Indices: 5707612--5707722 Score: 188
Period size: 42 Copynumber: 2.7 Consensus size: 42
5707602 TTTTAAAAAA
* *
5707612 CTCCTCTAAACAGAGGCTCGACGACTTTGG-AAAGTAAATTG
1 CTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTG
5707653 CTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTG
1 CTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTG
*
5707695 CTCCTTTAAACAGAGGCACCACGACTTT
1 CTCCTCTAAACAGAGGCACCACGACTTT
5707723 CCCCTCTAAA
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
41 28 0.42
42 38 0.58
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.23
Consensus pattern (42 bp):
CTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTG
Found at i:5707770 original size:41 final size:42
Alignment explanation
Indices: 5707725--5707810 Score: 147
Period size: 41 Copynumber: 2.1 Consensus size: 42
5707715 ACGACTTTCC
* *
5707725 CCTCTAAATAGAGGCACCATGAC-TTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
5707766 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
5707808 CCT
1 CCT
5707811 GACAATCATG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
41 21 0.50
42 21 0.50
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.26
Consensus pattern (42 bp):
CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
Found at i:5707782 original size:69 final size:70
Alignment explanation
Indices: 5707655--5707791 Score: 240
Period size: 69 Copynumber: 2.0 Consensus size: 70
5707645 GTAAATTGCT
*
5707655 CCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTTTAAACAGAGGCACCACGAC
1 CCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
5707720 TTTCC
66 TTTCC
* *
5707725 CCTCTAAATAGAGGCACCATGACTTTGG-AAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
1 CCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
5707789 TTT
66 TTT
5707792 TGGAAAGTAA
Statistics
Matches: 64, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
69 38 0.59
70 26 0.41
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.23
Consensus pattern (70 bp):
CCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
TTTCC
Found at i:5708100 original size:44 final size:42
Alignment explanation
Indices: 5708027--5708140 Score: 124
Period size: 43 Copynumber: 2.6 Consensus size: 42
5708017 TTTTGGAGGC
* *
5708027 TCACATCCAAAAGTTAAAGGTTCTT-ATTTGGCAAACTTGG-AAT
1 TCACATCCAAAAATTAAAGCTT-TTCATTT-G-AAACTTGGAAAT
* **
5708070 TCATATCCAAAAATCTAAAGCTTTTCATTTGAATTTTGGAAAT
1 TCACATCCAAAAAT-TAAAGCTTTTCATTTGAAACTTGGAAAT
5708113 TCACATCCAAAAATTCAAAGCTTTTCAT
1 TCACATCCAAAAATT-AAAGCTTTTCAT
5708141 CTGAGTTCAA
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
42 7 0.11
43 43 0.70
44 11 0.18
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.35
Consensus pattern (42 bp):
TCACATCCAAAAATTAAAGCTTTTCATTTGAAACTTGGAAAT
Found at i:5708376 original size:22 final size:22
Alignment explanation
Indices: 5708328--5708387 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 22
5708318 GGTTTCACTC
5708328 CTCAAAGATTCTCATTTTGAAAT
1 CTCAAAGATTCTCA-TTTGAAAT
**
5708351 -TCAAAGATTCTCATTTGAGTT
1 CTCAAAGATTCTCATTTGAAAT
*
5708372 CTCAAAAATTCTCATT
1 CTCAAAGATTCTCATT
5708388 AAAACATTCA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
21 6 0.18
22 27 0.82
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.40
Consensus pattern (22 bp):
CTCAAAGATTCTCATTTGAAAT
Found at i:5709511 original size:21 final size:20
Alignment explanation
Indices: 5709477--5709554 Score: 77
Period size: 23 Copynumber: 3.6 Consensus size: 20
5709467 CATTTTCTCA
*
5709477 TTTTCTCA-TTTTTTTCTTT
1 TTTTCTCATTTTTTTTTTTT
5709496 TTTTCTCATTTTTTTTCCTTTTT
1 TTTTCTCA-TTTTTTT--TTTTT
*
5709519 TTTTCATCATCTTCTCTTTTTTT
1 TTTTC-TCAT-TT-TTTTTTTTT
5709542 TTTTCTCATTTTT
1 TTTTCTCATTTTT
5709555 CATCCATTGT
Statistics
Matches: 49, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
19 8 0.16
20 1 0.02
21 8 0.16
22 4 0.08
23 20 0.41
24 5 0.10
25 3 0.06
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (20 bp):
TTTTCTCATTTTTTTTTTTT
Found at i:5709518 original size:19 final size:19
Alignment explanation
Indices: 5709469--5709510 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
5709459 TTTTTTTTCA
*
5709469 TTTTCTCATTTTCTCATTT
1 TTTTCTCTTTTTCTCATTT
*
5709488 TTTTCTTTTTTTCTCATTT
1 TTTTCTCTTTTTCTCATTT
5709507 TTTT
1 TTTT
5709511 TCCTTTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTCTCTTTTTCTCATTT
Found at i:5713733 original size:59 final size:58
Alignment explanation
Indices: 5713462--5713915 Score: 619
Period size: 59 Copynumber: 7.7 Consensus size: 58
5713452 TCTTGTGTAG
* *
5713462 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTG-AAATTTATTTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAA
* *
5713519 GGAAAATTGATACTTTCAA-TTTTCCCTAAAAATA-TTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAA
* *
5713575 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTTAATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT-GAAAATTT-ATTTTTAA
*
5713635 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAA
**
5713692 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTGAAAATTTATTTTTAA
* * *
5713751 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTTTAAAAAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAT---ATTTTTTT---GAAAATTTATTTTTAA
* * ** * *
5713815 GGAAAATGGATACTTTCAACTTTTCCCTAAAAATATTTTTCAGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTT-ATTTTTAA
*
5713874 GGAAGATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
5713916 TGGAACTTTT
Statistics
Matches: 353, Mismatches: 30, Indels: 26
0.86 0.07 0.06
Matches are distributed among these distances:
55 7 0.02
56 47 0.13
57 74 0.21
58 19 0.05
59 109 0.31
60 41 0.12
61 12 0.03
64 44 0.12
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.44
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAA
Found at i:5713977 original size:16 final size:16
Alignment explanation
Indices: 5713954--5714014 Score: 70
Period size: 16 Copynumber: 3.8 Consensus size: 16
5713944 ATAGAATAAT
*
5713954 AAAA-AAATAAAAGTG
1 AAAATAAATAAAAGTA
*
5713969 AAAATAAATAAAAATA
1 AAAATAAATAAAAGTA
*
5713985 AAAATAAAGAAAAGTA
1 AAAATAAATAAAAGTA
*
5714001 AAACAAAAATAAAA
1 AAA-ATAAATAAAA
5714015 ATAAGATAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
15 4 0.11
16 26 0.68
17 8 0.21
ACGTcount: A:0.79, C:0.02, G:0.07, T:0.13
Consensus pattern (16 bp):
AAAATAAATAAAAGTA
Found at i:5713983 original size:6 final size:6
Alignment explanation
Indices: 5713956--5714032 Score: 52
Period size: 6 Copynumber: 12.8 Consensus size: 6
5713946 AGAATAATAA
* * * *
5713956 AAAAAT AAAAGT GAAAAT --AAAT AAAAAT AAAAAT AAAGAAA AGTAAAAC
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAA-AAT A--AAAAT
* *
5714005 AAAAAT AAAAAT -AAGAT AAAGAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
5714033 ATATTAAATA
Statistics
Matches: 57, Mismatches: 8, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
4 4 0.07
5 4 0.07
6 41 0.72
7 3 0.05
8 3 0.05
9 2 0.04
ACGTcount: A:0.77, C:0.01, G:0.08, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:5713993 original size:27 final size:25
Alignment explanation
Indices: 5713936--5714018 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 25
5713926 GATTTTTATT
*
5713936 TAAAGAAAATAGAATAATAA-AAAAA
1 TAAAGAAAATA-AATAAAAATAAAAA
5713961 TAAAAGTGAAAATAAATAAAAATAAAAA
1 T-AAA--GAAAATAAATAAAAATAAAAA
*
5713989 TAAAGAAAAGTAAAACAAAAATAAAAA
1 TAAAGAAAA-T-AAATAAAAATAAAAA
5714016 TAA
1 TAA
5714019 GATAAAGATA
Statistics
Matches: 50, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
25 6 0.12
26 4 0.08
27 27 0.54
28 13 0.26
ACGTcount: A:0.76, C:0.01, G:0.07, T:0.16
Consensus pattern (25 bp):
TAAAGAAAATAAATAAAAATAAAAA
Found at i:5714023 original size:11 final size:11
Alignment explanation
Indices: 5713941--5714105 Score: 65
Period size: 11 Copynumber: 14.4 Consensus size: 11
5713931 TTATTTAAAG
*
5713941 AAAATAGAATA
1 AAAATAAAATA
5713952 ATAAA-AAAATA
1 A-AAATAAAATA
*
5713963 AAAGTGAAAATA
1 AAAAT-AAAATA
*
5713975 AATA-AAAATA
1 AAAATAAAATA
*
5713985 AAAAT-AAAGA
1 AAAATAAAATA
* *
5713995 AAAGTAAAACA
1 AAAATAAAATA
5714006 AAAATAAAA-A
1 AAAATAAAATA
*
5714016 TAAGATAAAGATAA
1 -AAAATAAA-AT-A
5714030 AAAATATTAAATA
1 AAAATA--AAATA
*
5714043 AAACCTAATCTAATA
1 AAA-ATAA---AATA
*
5714058 AATATAAAA-A
1 AAAATAAAATA
*
5714068 CAAATAAAATA
1 AAAATAAAATA
5714079 AAAA-ATAAATA
1 AAAATA-AAATA
5714090 AACAA-ATAAATA
1 AA-AATA-AAATA
5714102 AAAA
1 AAAA
5714106 AAATTCAAAA
Statistics
Matches: 119, Mismatches: 17, Indels: 36
0.69 0.10 0.21
Matches are distributed among these distances:
10 29 0.24
11 41 0.34
12 24 0.20
13 9 0.08
14 8 0.07
15 8 0.07
ACGTcount: A:0.74, C:0.04, G:0.04, T:0.18
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:5714025 original size:27 final size:28
Alignment explanation
Indices: 5713978--5714031 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
5713968 GAAAATAAAT
5713978 AAAAATAAAAATAAAGAAAAG-TAAAAC
1 AAAAATAAAAATAAAGAAAAGATAAAAC
5714005 AAAAATAAAAAT-AAGATAAAGATAAAA
1 AAAAATAAAAATAAAGA-AAAGATAAAA
5714032 AATATTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 4 0.16
27 16 0.64
28 5 0.20
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.13
Consensus pattern (28 bp):
AAAAATAAAAATAAAGAAAAGATAAAAC
Found at i:5714061 original size:4 final size:4
Alignment explanation
Indices: 5714054--5714103 Score: 50
Period size: 4 Copynumber: 12.5 Consensus size: 4
5714044 AACCTAATCT
* *
5714054 AATA AATA TAA-A AACA AATAA AATA AA-A AATA AATA AACA AATA AATA
1 AATA AATA -AATA AATA AAT-A AATA AATA AATA AATA AATA AATA AATA
5714102 AA
1 AA
5714104 AAAAATTCAA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
3 5 0.13
4 28 0.72
5 6 0.15
ACGTcount: A:0.78, C:0.04, G:0.00, T:0.18
Consensus pattern (4 bp):
AATA
Found at i:5714084 original size:12 final size:12
Alignment explanation
Indices: 5713955--5714106 Score: 68
Period size: 12 Copynumber: 12.5 Consensus size: 12
5713945 TAGAATAATA
5713955 AAAAAATAAAAGT
1 AAAAAATAAAA-T
*
5713968 -GAAAAT-AAAT
1 AAAAAATAAAAT
5713978 -AAAAATAAAAAT
1 AAAAAAT-AAAAT
5713990 AAAGAAAAGTAAAA-
1 -AA-AAAA-TAAAAT
*
5714004 CAAAAATAAAA-
1 AAAAAATAAAAT
* *
5714015 ATAAGATAAAGAT
1 AAAAAATAAA-AT
5714028 AAAAAATATTAAAT
1 AAAAAATA--AAAT
** **
5714042 AAAACCTAATCT
1 AAAAAATAAAAT
*
5714054 AATAAATATAAA-
1 AAAAAATA-AAAT
*
5714066 AACAAATAAAAT
1 AAAAAATAAAAT
5714078 AAAAAAT-AAAT
1 AAAAAATAAAAT
5714089 AAACAAAT-AAAT
1 AAA-AAATAAAAT
5714101 AAAAAA
1 AAAAAA
5714107 AATTCAAAAA
Statistics
Matches: 107, Mismatches: 19, Indels: 28
0.69 0.12 0.18
Matches are distributed among these distances:
10 6 0.06
11 28 0.26
12 45 0.42
13 8 0.07
14 9 0.08
15 10 0.09
16 1 0.01
ACGTcount: A:0.74, C:0.04, G:0.04, T:0.18
Consensus pattern (12 bp):
AAAAAATAAAAT
Found at i:5714092 original size:24 final size:23
Alignment explanation
Indices: 5714057--5714106 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 23
5714047 CTAATCTAAT
5714057 AAATATAAAAACAAATAAAATAAA
1 AAATATAAAAACAAAT-AAATAAA
5714081 AAATA-AATAAACAAATAAATAAA
1 AAATATAA-AAACAAATAAATAAA
5714104 AAA
1 AAA
5714107 AATTCAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
23 12 0.48
24 13 0.52
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (23 bp):
AAATATAAAAACAAATAAATAAA
Found at i:5714107 original size:24 final size:24
Alignment explanation
Indices: 5713969--5714106 Score: 84
Period size: 27 Copynumber: 5.5 Consensus size: 24
5713959 AATAAAAGTG
* * *
5713969 AAAATAAATAAAAATAAAAATAAAG
1 AAAATAAA-AAATATAAAAACAAAT
* *
5713994 AAAAGTAAAACAAAAATAAAAATAAGAT
1 AAAA-T-AAA-AAATATAAAAACAA-AT
*
5714022 AAAGATAAAAAATATTAAATAA-AACCT
1 AAA-ATAAAAAATA-TAAA-AACAA-AT
** *
5714049 AATCTAATAAATATAAAAACAAAT
1 AAAATAAAAAATATAAAAACAAAT
5714073 AAAATAAAAAATA-AATAAACAAAT
1 AAAATAAAAAATATAA-AAACAAAT
5714097 -AAATAAAAAA
1 AAAATAAAAAA
5714107 AATTCAAAAA
Statistics
Matches: 93, Mismatches: 12, Indels: 18
0.76 0.10 0.15
Matches are distributed among these distances:
23 12 0.13
24 21 0.23
25 10 0.11
26 13 0.14
27 29 0.31
28 7 0.08
29 1 0.01
ACGTcount: A:0.75, C:0.04, G:0.03, T:0.18
Consensus pattern (24 bp):
AAAATAAAAAATATAAAAACAAAT
Found at i:5714991 original size:27 final size:28
Alignment explanation
Indices: 5714927--5715019 Score: 66
Period size: 27 Copynumber: 3.3 Consensus size: 28
5714917 AAAATCAAAT
* *
5714927 AAATAAAAAAAAT--TAGATAATTAGAAA
1 AAATAAAAAAAATAATATAGAATTA-AAA
* * *
5714954 AGATAATAAAAAAATATTATAGGA-TAAAA
1 AAAT-A-AAAAAAATAATATAGAATTAAAA
* * *
5714983 AAATAAAAACAATAATATATAATTAAAT
1 AAATAAAAAAAATAATATAGAATTAAAA
5715011 AAATAAAAA
1 AAATAAAAA
5715020 TACAAAAATA
Statistics
Matches: 51, Mismatches: 10, Indels: 9
0.73 0.14 0.13
Matches are distributed among these distances:
27 16 0.31
28 15 0.29
29 14 0.27
30 2 0.04
31 4 0.08
ACGTcount: A:0.70, C:0.01, G:0.05, T:0.24
Consensus pattern (28 bp):
AAATAAAAAAAATAATATAGAATTAAAA
Found at i:5715015 original size:4 final size:4
Alignment explanation
Indices: 5714977--5715085 Score: 56
Period size: 4 Copynumber: 28.8 Consensus size: 4
5714967 ATATTATAGG
* * * *
5714977 ATAA AAAA ATAA AAACA AT-A ATAT ATAA TTAA ATAA AT-A A-AA ATACA
1 ATAA ATAA ATAA ATA-A ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATA-A
* * * *
5715024 A-AA ATAA ATAAA ATAA A-AA AT-A ATAA AAAA ATAT AT-T ATTA AT-A
1 ATAA ATAA AT-AA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA
5715068 ATAA ATAA AT-A ATAA ATA
1 ATAA ATAA ATAA ATAA ATA
5715086 CATAGGATAT
Statistics
Matches: 81, Mismatches: 12, Indels: 24
0.69 0.10 0.21
Matches are distributed among these distances:
3 24 0.30
4 49 0.60
5 8 0.10
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAA
Found at i:5715030 original size:18 final size:17
Alignment explanation
Indices: 5715007--5715133 Score: 80
Period size: 18 Copynumber: 7.1 Consensus size: 17
5714997 ATATATAATT
5715007 AAATAAATAAAAATACAA
1 AAATAAATAAAAATA-AA
5715025 AAATAAAT-AAAATAAA
1 AAATAAATAAAAATAAA
* *
5715041 AAATAATAAAAAAATATA
1 AAATAA-ATAAAAATAAA
** *
5715059 TTATTAATAATAAATAAA
1 AAATAAATAA-AAATAAA
* * *
5715077 TAATAAATACATAGGATATAC
1 AAATAAATA-A-A-AATA-AA
5715098 AAA-AAATATAAAATAAA
1 AAATAAATA-AAAATAAA
5715115 ATAA-AAATAAAAATAAA
1 A-AATAAATAAAAATAAA
5715132 AA
1 AA
5715134 TGACAAAGAT
Statistics
Matches: 87, Mismatches: 15, Indels: 16
0.74 0.13 0.14
Matches are distributed among these distances:
16 9 0.10
17 21 0.24
18 41 0.47
19 4 0.05
20 9 0.10
21 3 0.03
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.23
Consensus pattern (17 bp):
AAATAAATAAAAATAAA
Found at i:5715037 original size:27 final size:28
Alignment explanation
Indices: 5714977--5715081 Score: 85
Period size: 27 Copynumber: 3.6 Consensus size: 28
5714967 ATATTATAGG
5714977 ATAAAA-AAAT-AAAA-ACAATAATATATA
1 ATAAAATAAATAAAAATACAA-AA-ATATA
*
5715004 ATTAAATAAATAAAAATACAAAAATA-A
1 ATAAAATAAATAAAAATACAAAAATATA
*
5715031 ATAAAATAAA-AAATAATAAAAAAATATA
1 ATAAAATAAATAAA-AATACAAAAATATA
5715059 TTATTAATAATAAATAAATAATA
1 --A-TAA-AATAAATAAA-AATA
5715082 AATACATAGG
Statistics
Matches: 65, Mismatches: 3, Indels: 14
0.79 0.04 0.17
Matches are distributed among these distances:
26 3 0.05
27 26 0.40
28 8 0.12
29 6 0.09
30 5 0.08
31 3 0.05
32 6 0.09
33 8 0.12
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (28 bp):
ATAAAATAAATAAAAATACAAAAATATA
Found at i:5715053 original size:34 final size:35
Alignment explanation
Indices: 5714980--5715053 Score: 82
Period size: 34 Copynumber: 2.2 Consensus size: 35
5714970 TTATAGGATA
* * *
5714980 AAAAAATAAAAACAATAATATATAATTAAATAAAT
1 AAAAAATAAAAACAATAATATAAAATAAAAAAAAT
*
5715015 -AAAAATACAAA-AATAA-ATAAAATAAAAAATAAT
1 AAAAAATAAAAACAATAATATAAAATAAAAAA-AAT
5715048 AAAAAA
1 AAAAAA
5715054 ATATATTATT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
32 10 0.30
33 8 0.24
34 15 0.45
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (35 bp):
AAAAAATAAAAACAATAATATAAAATAAAAAAAAT
Found at i:5715117 original size:12 final size:12
Alignment explanation
Indices: 5715100--5715132 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
5715090 GGATATACAA
5715100 AAAATATAAAAT
1 AAAATATAAAAT
5715112 AAAATA-AAAAT
1 AAAATATAAAAT
5715123 AAAA-ATAAAA
1 AAAATATAAAA
5715133 ATGACAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (12 bp):
AAAATATAAAAT
Found at i:5715123 original size:6 final size:6
Alignment explanation
Indices: 5715099--5715134 Score: 56
Period size: 6 Copynumber: 6.0 Consensus size: 6
5715089 AGGATATACA
5715099 AAAAAT ATAAAAT -AAAAT AAAAAT AAAAAT AAAAAT
1 AAAAAT A-AAAAT AAAAAT AAAAAT AAAAAT AAAAAT
5715135 GACAAAGATA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 5 0.18
6 18 0.64
7 5 0.18
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
AAAAAT
Found at i:5715134 original size:18 final size:18
Alignment explanation
Indices: 5715099--5715132 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
5715089 AGGATATACA
5715099 AAAAATATAAAATAAAAT
1 AAAAATATAAAATAAAAT
5715117 AAAAATA-AAAATAAAA
1 AAAAATATAAAATAAAA
5715133 ATGACAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (18 bp):
AAAAATATAAAATAAAAT
Found at i:5715524 original size:26 final size:26
Alignment explanation
Indices: 5715472--5715524 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5715462 GTTGACTTAG
*
5715472 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATATAA
*
5715498 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAATATAA
5715524 G
1 G
5715525 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATATAA
Found at i:5716692 original size:27 final size:27
Alignment explanation
Indices: 5716634--5716692 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
5716624 ACTCCTTCTG
**
5716634 AAAAAATTTTAGAAAATCTCGAACCAT
1 AAAAAATTTTAGAAAATCTCGAAAAAT
5716661 AAAAAATTTT-GAAAATCGT-GAAAAAT
1 AAAAAATTTTAGAAAATC-TCGAAAAAT
*
5716687 AGAAAA
1 AAAAAA
5716693 CGAGTCGTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 17 0.61
27 11 0.39
ACGTcount: A:0.58, C:0.08, G:0.10, T:0.24
Consensus pattern (27 bp):
AAAAAATTTTAGAAAATCTCGAAAAAT
Found at i:5717838 original size:26 final size:26
Alignment explanation
Indices: 5717801--5717853 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5717791 GTTGACTTAG
5717801 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5717827 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5717853 G
1 G
5717854 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5719620 original size:26 final size:26
Alignment explanation
Indices: 5719583--5719661 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
5719573 GTTGACTTAG
*
5719583 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5719609 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5719635 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5719661 G
1 G
5719662 ATCGGATCGG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5720547 original size:26 final size:26
Alignment explanation
Indices: 5720506--5720586 Score: 126
Period size: 26 Copynumber: 3.1 Consensus size: 26
5720496 TATGGGTTGA
*
5720506 CTTAGGCATACAGAGTTCATTCCCAGT
1 CTTA-GCATACGGAGTTCATTCCCAGT
5720533 CTTAGCATACGGAGTTCATTCCCAGT
1 CTTAGCATACGGAGTTCATTCCCAGT
* *
5720559 CTGAGGATACGGAGTTCATTCCCAGT
1 CTTAGCATACGGAGTTCATTCCCAGT
5720585 CT
1 CT
5720587 AAGATCGGAC
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
26 47 0.92
27 4 0.08
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGCATACGGAGTTCATTCCCAGT
Found at i:5720685 original size:928 final size:923
Alignment explanation
Indices: 5718705--5725846 Score: 8623
Period size: 928 Copynumber: 7.8 Consensus size: 923
5718695 TTAGGCATAC
* * * * *
5718705 GGAGTTCATTCCCAATCTAAGATCGGA-TCGGACCGAGGGTTGTGGCAGCACATGCTGGGTTCGA
1 GGAG-TCATTCCCAGTCTAAGATCGGACT-GGACCGAAGGTTGCGGCAGCACATGCTGGGCTCGG
* ** * *
5718769 GCATGTGCTGGTGCCACATTTTTCTTCACCGGGGTACCATCACCGGAGCATCGTCGGAGAACTTG
64 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTG
* * ** * * * *
5718834 ACAGGCGAAATTGGGGTTACAACAATCGGGGGGGCCGAGGGGGGGTGTGCGCACATGATGTGCGA
129 ACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCC---GGGGGGTGTGCGCACATGATGTGCGA
* * *
5718899 TGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTCAAACC
191 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
5718964 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTTTGAAATGGG
256 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
5719029 GACACTCTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGC
321 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
5719094 ATGCCAACAAAAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAAATCCTTC-CAAAAGAAT
386 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA-AAT
* * *
5719158 TTTAAAAAATCCTGAACCGTAAAAAGTTTTGACAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
450 TTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
5719223 TATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
515 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
5719288 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
580 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
5719353 TCCCGTCCCTCTGGCCTG-CGTAATGCCCGCCTGCCCGCCTGCCCGCCCGGTCGTTTCGTCGGTT
645 TCCCGTCTCTCTGGCC-GACGTAGTG--C-CC-GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * **
5719417 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC-GAACCAAGGGTTGCGGTAATAG
705 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAG
*** * * * *
5719481 GATCGGCAGCACACGGAGGGGGACCCGGTCGATCCCCGACTTGCGCATTCTGCCCCTCTAGCCGA
769 GATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGG
* * * * *
5719546 CTGGGTGCCCACATGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGC
834 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
5719611 ATACGGAGTTCATTCCCAGTCTAAGCATA
899 ATACGGAGTTCATTCCCAGTCT----ATA
* *
5719640 CGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGACCGAAGGTTGTGGCAGCACATGTTGGGCTCG
1 -GGAG-TCATTCCCAGTCTAAGATCGGACT-GGACCGAAGGTTGCGGCAGCACATGCTGGGCTCG
* ** ** *
5719704 GGCATGTGCTAGTGCCGCATTTTTCTTCACCGGGGCACCATTGCCGAAGCATCGTCGGAGAACCT
63 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCT
* * * *
5719769 GACCAACGGCATTGGGGTTCCGACGATCGAAGGGGCCGGGGGGTGTGCGCACATGATGTACAATG
128 GACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* * * *
5719834 GGTGCTGGTACTTGGCCCCTATATTGGGCCCGTATACCTCATCAAACCTCGAGAACTCACACCCC
193 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
5719899 CTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
258 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
5719964 CACTTTTTTCAAATGGTCACAAATTCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
323 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* ** *
5720029 GCCAACAAAAATACGAGGATCACGTCTACCAAGTTTGCAGCCAAAACTCCTTCTGAAAAAATTTC
388 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT
** * *
5720094 AAAAAATGTCGAATCG-CAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
453 AAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
5720158 GAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATGGCATTGGC
518 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
5720223 ACGTAGAAACATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCC
583 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
5720288 CATCTCTCTGGTCGACGTAGTGCCCGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
648 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * *
5720353 CATACGGAGTTTATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATTGGTAG
713 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * *
5720418 CACGTAGAGGGGAACTCGATCGATCCCCGACTTGCGCATTCTGCCCCTCTGGCCGGCTGAGCGCC
778 CACGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* * ** * *
5720483 CTCACGCTTGTTTTATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTTAGCATACGGAGT
843 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
5720548 TCATTCCCAGTCTGAGGATA
908 TCATTCCCAGTCT----ATA
* *
5720568 CGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAAGGTTGCGGCAGCACATGCTGGGCTCAG
1 -GGAG-TCATTCCCAGTCTAAGATCGGACTGGACCGAAGGTTGCGGCAGCACATGCTGGGCTCGG
* * *
5720633 GCATGTGCTGGTGTCGCATTTTTCTTCGTTGGGGCACCATCATCGGAGCATCGTCGGAGAACCTG
64 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTG
* * * ** * *
5720698 ACCGACGACATTGGCGTTTCGACGATCGAGGGGGCCAAGGGGTGTGCACAAATGATGTGCGATGG
129 ACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
*
5720763 GTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
194 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * * *
5720828 TTAAAGAGCATTTCAGACTTTCCAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGAC
259 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
5720893 ACTTTTTTCAAATGG-CTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGTA
324 ACTTTTTTCAAATGGTC-ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCA
*
5720957 TGCCAACAAAAATACAAGGATCACG-CTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTT
387 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
* * ** * * *
5721021 TAAAAAATCCCAAACCGCAAAAAGGATCAAATATCAG-GAAAAATAAAAAACGAGTCGTCTTGCC
452 TAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATC-GTGAAAAATAGAAAACGAGTCGTCTTGCC
* **
5721085 ATGAAACTTCATGTGAAGGCTTAAGGGACCATAATATGAATTTACAAGCCATAAAAATGGCATTG
516 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** * * **
5721150 GCACATAGAAATATGAAGGTGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCTTAT
581 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
5721215 CCCGTCTCTCTGGTCAACGTAATGCCCGCCCGCCCGCCCGTCCGTCTGCTCGTTTCGTCGGTTGG
646 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG-CC--C-GCTCGTTTCGTCGGTTGG
*
5721280 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGGACCGAGGGTTGCGACAGCAGGA
707 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACCGAGGGTTGCGGCAGCAGGA
* * * * * * * * *
5721344 TCGGCAACACGTAAAGGGGGACCTGACCGATCCCCGGCTTGCACATCCTGCCCCTTTGGCTGCCT
771 TCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCT
* * * * *
5721409 GAGCGCTCGCACGCTCGTTTTGTGAGTTGACTTACGCATACAGAGTTCATTCCCAGTCTAAG---
836 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
5721471 -C--A--T-A-T---AG-----A
901 ACGGAGTTCATTCCCAGTCTATA
* * * ** *
5721479 -G-TTCATTCCCAGTCTAAGATCGGATTGGACCGAAGGTTGTGATAGTACATGCTGGGCTCGGGC
1 GGAGTCATTCCCAGTCTAAGATCGGACTGGACCGAAGGTTGCGGCAGCACATGCTGGGCTCGGGC
* ** *
5721542 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGAC
* * * * * *
5721607 TGGCGGCATTGGGGTTCCGGC-A-C-A-----TC-------G-GAGAACATGATGTGCGATGGGT
131 CGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
5721656 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
196 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
5721721 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTTTGAAATGGGGACAC
261 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * *
5721786 CTTTTTCAAATGGTCAGAAAATCATGTACAGTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
326 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * ** ** * * *
5721851 AACAATAATACAAGGATCATGTCTACTGAGTTTGATGCCAAAACTACTGCCGAAAAAATTTT-AA
391 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
* * * * * * *
5721915 AAATCTCAAACTGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAA
456 AAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
5721980 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCATG
521 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * *
5722045 CAAAAATATCAAGATGTGACTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGT
586 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * ** *
5722110 CTCTCTGGCCGGCGTAGTGCCCGCCTGCCCACCCGCCTACTCGTTTCGTCGGTTGGCTGAGGCAT
651 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * * *
5722175 ACGGAGCTCATTCCTAGTCTAACATCGGACCAGACCGAGGGTTGCGGTAGCAAGATCGGTAGCAC
716 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAC
* * * *
5722240 GTAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCAC
781 GTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGC
* * *
5722305 ACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTATAAGCATATGGAG-TCA
846 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
5722369 TTCCCAG--TATA
911 TTCCCAGTCTATA
* * * * * *
5722380 --A---A-----A-TC--GGATC--A---GACCGAGGGATGCAGTAGCACATGCTGGGCTCGAGC
1 GGAGTCATTCCCAGTCTAAGATCGGACTGGACCGAAGGTTGCGGCAGCACATGCTGGGCTCGGGC
** * * * *
5722427 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGCTTTGCCGGAGAACCTGAT
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGAC
* * * *
5722492 CGACGGAATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGG
131 CGACGGCATTGGGGTTCCGACGATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGG
* * * * * * * *
5722557 TGCTGGTACTTGGCTCTTATATTGGCACCCTATCCTTCATCAAACCTCAATAAGTCACACTCCAT
195 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
5722622 TAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
5722687 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTTTGTGCATGC
325 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* *
5722752 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAGAAA-TCCTTCCGAAAAAATTTTA
390 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTCTGAAAAAATTTTA
* * *
5722816 AAAAATGCCGAACTGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
454 AAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
5722881 AAACTTCACGTGACGCCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
519 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * *
5722946 TGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACAGCTTGCGCTTCCA
584 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* *
5723011 GTCTCTCTGGCCGACGTAGTGGCCGCCCGCCCGCCTACCCACTCATTTCATCACCCGCCTACCCA
649 GTCTCTCTGGCCGACGTAGT----GCCCGCCCG----------C----C--CGCCCG----CCCG
* * ** ***
5723076 CTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGATTGGACCGAG
690 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * * * * *
5723141 GGTTGCGGTAGCAAGATCGACAGCATGCAGAGGGGGACCCG-TCCGATCCCCGGCTTGTGCATCC
755 GGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGAT-CGATCCCCGACTTGCGCATCC
* ** * *
5723205 CGCCCCTCTGGCTAGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
819 TGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
5723270 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA-A
884 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTATA
*
5723309 --A---A-T--C-G-----GATCGGACT-GA--G--GGATGCGGCAGCACATGCTGGGCTCGGGC
1 GGAGTCATTCCCAGTCTAAGATCGGACTGGACCGAAGGTTGCGGCAGCACATGCTGGGCTCGGGC
5723355 ATGTGCTGGTGCCGCATTTTT-TTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGAC
* * * * * * * *
5723419 TGACGGCAGTGGGGTT-TGGCGATTG-GGGGTCCGGGGGGTGTGCGCACATGAAGTGTGATGGGT
131 CGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
5723482 GCTGGTACTT-G---------T--CCCCCTATCCCTCATGAAACCTCGAGAACTCACACCCCCTT
196 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
5723535 AAAGGGCATTTGTGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
261 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * *
5723600 TTTTTTCGAATGGTCACAAAATCTTGTACACTTCAAG-TTGTAGCTGAATTTTTTTGTGCGTGCC
326 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
5723664 AACAAAACTATAAGGATCATGTCTACCAAGTTTGGGGCCGAAACTCCTTCTGAAAAAATTTTAAA
391 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
* * * * * *
5723729 AAATCCCGAGCCGCATAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
456 AAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * *
5723794 ACTTCACGTGAAGGCTTAAGGGACTATTGTATGAGTTTACAAGCCAAAAAAATGGCATTGGCACA
521 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * *
5723859 TAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGT
586 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * * * * * *
5723924 CACTTTGGTCGGCGTAGTGCCAGCCCACTCGCCCGCCCGCTCATTTCGTCGGCTGGCTTAGGCAT
651 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * *
5723989 ACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGAACCGAGGGTTGTGGCAGTAGGATCGGTAGCA
716 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
** ** * * *
5724053 CACAGAGGGGGACCC-AGTCGATCCCCGACTTGCGTTTTCTGCCCCTCTGACCGGCTGAGCGTCC
780 CGTAGAGGGGGACCCGA-TCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
* *
5724117 GTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTT
844 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* *
5724182 CTTTCCCAATC--TA
909 CATTCCCAGTCTATA
* * *
5724195 --AG--A-T--C-G-----GATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGC
1 GGAGTCATTCCCAGTCTAAGATCGGACTGGACCGAAGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * *
5724247 ATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCATCGAAGCATCGTCGGAGAACCTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGAC
* * * *
5724312 CGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGT
131 CGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
5724377 GCTGGTACTTGGCCGTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTT
196 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
5724440 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCACTAAAGTGTCTGAAATGGGGATAC
261 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * * *
5724505 TTTTTTCAAATGGTCAAAAAATATTGTACACTTCGAGTTTTTACCTGAATGTTTTTATGCATGCC
326 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
*
5724570 AACAAAAATACAAGCATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
391 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
* * * * *
5724635 AAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGCCGCCTTCCCATGAA
456 AAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
5724700 ACTTCACGTGAAGCCTTAAGGGAGCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCACG
521 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * *
5724765 TAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGTGCATCCTGT
586 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
5724830 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCTCTCGTCCGCTCGTTTCGTCGGCTGGCTTAG
651 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCG--C-C-CGCCCGCTCGTTTCGTCGGTTGGCTTAG
** * * *
5724895 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAAGGTTGTGGCAGCAGGATCGGCA
712 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* *
5724960 GC-C-TACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
777 GCACGT--AGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC
* * * * * *
5725023 ACCCGCACGTTCATTTCATGGGTTGAGTTAGGCATACGGAGTTCATTCCAAGTCTAAGCATACGG
840 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
5725088 AGTTCATTCCCAGTC--TA
905 AGTTCATTCCCAGTCTATA
** * * *
5725105 --AG--------A---T--G---GGACCAGACC-AAGGGTTACGGTAGCACATGCTGGGCTCGAG
1 GGAGTCATTCCCAGTCTAAGATCGGACTGGACCGAA-GGTTGCGGCAGCACATGCTGGGCTCGGG
* * ** * * *
5725151 CATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCAGAGCATCATCGGAGAATCTGA
65 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGA
* * * * *
5725216 TCGACAGCATTAGGGTTCCGACGATC-AGGGGGGCCGGGGGTGGTATACGCACATGATGTGCGAT
130 CCGACGGCATTGGGGTTCCGACGATCGA-GGGGGCC-GGGG-GGTGTGCGCACATGATGTGCGAT
5725280 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CC
192 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
5725344 CCTTAAAGAGCATTTGAGATTCTACAGGTTTGCGTGCCAGTAGCCATTAAAGTGGTCTG-AAT-G
257 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGC-TGCCAGTAGCCATTAAAGT-GTCTGAAATGG
* *
5725407 GGACACTTTTTTCTAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAACTTTTTTT-T
320 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGT
** ** *
5725471 GCATGCCAA-AAAAATTACAAGGATCACGTCTACCAAGTTCAGGGTGAAAAATCCTTCTGAAAAA
384 GCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * * * *
5725535 ATTTTAAAAAATCCCGATCTGTAAAAACTTTTGAAAATCGTGAAAAGTAGAAAACGAGTCGTCTT
448 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
5725600 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
513 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
5725665 TTGGCAAGCAGAAATATGAAGATGAGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCG
578 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
5725730 CATCCCGTCTCTCTGGCCGACGTAGT--------GCCCGCCCGCCCGCTCGTTTTGTCGGTTGGC
643 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * *
5725787 TTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCA
708 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
5725847 CATGCTGGGC
Statistics
Matches: 5413, Mismatches: 660, Indels: 306
0.85 0.10 0.05
Matches are distributed among these distances:
885 102 0.02
886 183 0.03
887 211 0.04
888 4 0.00
889 2 0.00
890 239 0.04
891 219 0.04
892 52 0.01
893 56 0.01
894 6 0.00
895 45 0.01
896 76 0.01
897 2 0.00
898 4 0.00
899 1 0.00
900 5 0.00
901 2 0.00
902 247 0.05
903 199 0.04
904 2 0.00
905 220 0.04
906 318 0.06
907 197 0.04
908 371 0.07
909 29 0.01
910 216 0.04
911 267 0.05
912 128 0.02
914 1 0.00
917 1 0.00
920 2 0.00
921 1 0.00
923 8 0.00
924 39 0.01
925 7 0.00
926 5 0.00
927 245 0.05
928 666 0.12
929 235 0.04
930 8 0.00
931 1 0.00
932 189 0.03
933 455 0.08
934 4 0.00
936 143 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (923 bp):
GGAGTCATTCCCAGTCTAAGATCGGACTGGACCGAAGGTTGCGGCAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGAC
CGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
AAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAC
GTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
TTCCCAGTCTATA
Found at i:5721480 original size:26 final size:26
Alignment explanation
Indices: 5721444--5721496 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5721434 GTTGACTTAC
5721444 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5721470 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5721496 G
1 G
5721497 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5722375 original size:25 final size:26
Alignment explanation
Indices: 5722330--5722380 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
5722320 GTTGACTTAG
5722330 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
5722356 GCATATGGAG-TCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
5722381 AATCGGATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:5723072 original size:24 final size:24
Alignment explanation
Indices: 5723040--5723086 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
5723030 TGGCCGCCCG
5723040 CCCGCCTACCCACTCATTTCATCA
1 CCCGCCTACCCACTCATTTCATCA
*
5723064 CCCGCCTACCCACTCGTTTCATC
1 CCCGCCTACCCACTCATTTCATC
5723087 GGTTGGCTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.17, C:0.51, G:0.06, T:0.26
Consensus pattern (24 bp):
CCCGCCTACCCACTCATTTCATCA
Found at i:5723293 original size:26 final size:26
Alignment explanation
Indices: 5723257--5723308 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
5723247 GTTGACTTAG
5723257 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5723283 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5723309 AATCGGATCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5724173 original size:26 final size:26
Alignment explanation
Indices: 5724144--5724196 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5724134 GTTGACTTAG
* *
5724144 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
5724170 GCATACGGAGTTCTTTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5724196 G
1 G
5724197 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5725084 original size:26 final size:26
Alignment explanation
Indices: 5725054--5725106 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5725044 GTTGAGTTAG
5725054 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
5725080 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
5725106 G
1 G
5725107 ATGGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:5726436 original size:700 final size:705
Alignment explanation
Indices: 5725080--5726523 Score: 2167
Period size: 700 Copynumber: 2.0 Consensus size: 705
5725070 CCAAGTCTAA
** *
5725080 GCATACGGAGTTCATTCCCAGTCTAAGATGGGACCAGACCAAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCACATGCTGGG
5725145 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCAGAGCATCATCGGAGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGG--CCA---TC--A-CATCATCGGAGA
* *
5725210 ATCTGATCGACAGCATTAGGGTTCCGACGATCAGGGGGGCCGGGGGTGGTATACGCACATGATGT
123 ATCTGACCGACAGCATTAGGGTTCAGACGATCAGGGGGGCCGGGGGTGGTATACGCACATGATGT
*
5725275 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
188 GCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * **
5725340 CACCCCTTAAAGAGCATTTGAGATTCTACAGGTTTGCGTGCCAGTAGCCATTAAAGTGGTCTGAA
253 CACCCCTTAAAGAGCATTTGAGATTCTACAGGTTTGCGTACCAGTAACAATTAAAGTGGTCAAAA
* *
5725405 TGGGACACTTTTTTCTAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAACTTTTTTT
318 TGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAACTTTTTTG
**
5725470 TGCATGCCAAAAAAATTACAAGGATCACGTCTACCAAGTTCAGGGTGAAAAATCCTTCTGAAAAA
383 TGCATGCCAAAAAAATTACAAGGATCACGTCTACCAAGTTCAGGGCCAAAAATCCTTCTGAAAAA
* ** * *
5725535 ATTTTAAAAAATCCCGATCTGTAAAAACTTTTGAAAATCGTGAAAAGTAGAAAACGAGTCGTCTT
448 ATTTTAAAAAATCCCGAACTGTAAAAACTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTC
*
5725600 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
513 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCA
* *
5725665 TTGGCAAGCAGAAATATGAAGATGAGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCG
578 TTGGCAAGCAGAAATATGAAGATGAGACTAAACTCACCTACCACCCTATCGATCCACAGCTTGCG
*
5725730 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCG-T-TTTGTCGGTTGGCTTAG
643 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCTGTTCGTCGGTTGGCTTAG
* * *
5725791 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCACATGCTGGG
* *
5725856 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG-CA-C-CATCATCGGAGAA-CTTGAC
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCCATCACATCATCGGAGAATC-TGAC
* * * * *
5725917 CGACGGCATTGGGGTTCAGACGATC-GGGGGGCTGGGGG-GGCTGTGCGCACATGATGTGCGATG
130 CGACAGCATTAGGGTTCAGACGATCAGGGGGGCCGGGGGTGG-TATACGCACATGATGTGCGATG
5725980 GGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
194 GGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCC
* *
5726045 CTTAAAGAGCATTTGAGATTTTACAGGTTTGC-TACCAGTAACAATTAAAGTGTTCAAAATGGGG
258 CTTAAAGAGCATTTGAGATTCTACAGGTTTGCGTACCAGTAACAATTAAAGTGGTCAAAAT-GGG
* *
5726109 ACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTATTTTGTGC
322 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAACTT-TTTTGTGC
* * * *
5726173 ATGCCAACAAAAA-TATAGGGATCACGTCTACCAAGTT-TGGGACCAAAAATCCTTCTGAAAACA
386 ATGCCAA-AAAAATTACAAGGATCACGTCTACCAAGTTCAGGG-CCAAAAATCCTTCTGAAAAAA
** * * * *
5726236 TTTTGGAAAATCCTGAACTTTAAAAAGTTTCAAAAATCGTTAAAAATAGAAAACGAGTCGTCTCG
449 TTTTAAAAAATCCCGAACTGTAAAAACTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTCG
5726301 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCAT
514 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCAT
* *
5726366 TGGCATGCAGAAATATGAAGATGTGACTAAAC-CAACCTACCACCCTATCGATCCACAGCTTGCG
579 TGGCAAGCAGAAATATGAAGATGAGACTAAACTC-ACCTACCACCCTATCGATCCACAGCTTGCG
* *
5726430 CATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCTCGCTCGGTTCGTTGGTTGGCTTAG
643 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCT--GTTCGTCGGTTGGCTTAG
5726495 GCATACGGAGTTCATTCCCAGTCTAAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT
5726524 TGGATGGAAC
Statistics
Matches: 668, Mismatches: 53, Indels: 31
0.89 0.07 0.04
Matches are distributed among these distances:
698 2 0.00
699 121 0.18
700 397 0.59
701 6 0.01
704 44 0.07
708 2 0.00
711 96 0.14
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (705 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCCATCACATCATCGGAGAATCTGACC
GACAGCATTAGGGTTCAGACGATCAGGGGGGCCGGGGGTGGTATACGCACATGATGTGCGATGGG
TGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTT
AAAGAGCATTTGAGATTCTACAGGTTTGCGTACCAGTAACAATTAAAGTGGTCAAAATGGGACAC
TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAACTTTTTTGTGCATGCC
AAAAAAATTACAAGGATCACGTCTACCAAGTTCAGGGCCAAAAATCCTTCTGAAAAAATTTTAAA
AAATCCCGAACTGTAAAAACTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTCGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCAAG
CAGAAATATGAAGATGAGACTAAACTCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGT
CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCTGTTCGTCGGTTGGCTTAG
Found at i:5726691 original size:26 final size:26
Alignment explanation
Indices: 5726654--5726703 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
5726644 GTTGACTTAG
* *
5726654 GCATACGGAGTTCATTCCCAGTCTCA
1 GCATACGAAGTTCATTACCAGTCTCA
5726680 GCATACGAAGTTCATTACCAGTCT
1 GCATACGAAGTTCATTACCAGTCT
5726704 AAGATCGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTACCAGTCTCA
Found at i:5727994 original size:26 final size:26
Alignment explanation
Indices: 5727942--5727994 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5727932 GTTGACTTAG
* *
5727942 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
5727968 GCATACGGAGTTCATTCCCAATTTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5727994 G
1 G
5727995 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5729753 original size:871 final size:868
Alignment explanation
Indices: 5726980--5731297 Score: 5241
Period size: 871 Copynumber: 4.9 Consensus size: 868
5726970 GTTTGCTCGC
* * * * * * *
5726980 AGAGGGGGACTCGATCGATCCCCGGCTTGCGCATCCCACCCCTT-TGGCCGGTTGAGCGCCAGTA
1 AGAGGGGGACCCGACCGAT-CCCGACTTGCGCATCCC-GCCCTTCTGGCCGGCTGAGCGCCCGCA
* * * * * * *
5727044 CGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAATTTAAGGTAGGACTGGACCG
64 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGCCCGGACCG
* * *
5727109 AGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGG-GGA
129 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGCGCA
* ** * * ** * *
5727173 CCCATCA-CCGGAGCATCACCATAGATCATGACCGGTGGCATTTGGGTTCCGGCGATCAGTGGGC
194 -CCAT-AGCCGGAGCATCGCCGGAGAACCTGACCGACGGCA-TTGGGTTCC-GCGATCGGGGGGC
* * * * *
5727237 TGGGGGGTGTGCGCACAAGATGTGTGGTGGGTGCTGGTACTTGGCTCTTATATTGGCCCTCTATC
255 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATC
*
5727302 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACC
319 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
** *
5727367 AACAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTT
384 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
5727432 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGCTCACGTCCACCATGTTT
449 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTT
* * *
5727497 GGGG-CAAAACTCTTTCTGAAAAAA-TTTAAAAAATCTAGAACCGTAAAAAGTTTCAAAAATCGT
514 GGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCAT
*
5727560 GAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
579 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * * * *
5727625 AATTTAAAAGCCATAAAAATGGCATTGGCACATAGAAATAGGAAGATGTGCCCAAACCCACCTAT
644 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
** * *
5727690 CACCCTATCGATCCACGGCTTGTTCATCCCGTCTCTCTGGCCGACGTAGTGCCAGCCCACCCGCC
709 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCC
* * * *
5727755 CGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAA
774 CGCTCA-T--TTT-GTCGGTTCGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* * * *
5727820 ACTGAGGGTTGCAGTAGTAGGATCGGCAGCACGT
835 ACCGAGGGTTGCAGCAGCAGGATCGGCAGCACAT
* * * * *
5727854 AGAGGGGGACCCGACAGATGCCCTG-CTTGCTCATCCTGCCCCTT-TGGCCTGCTGAGCCCCCGC
1 AGAGGGGGACCCGACCGAT-CCC-GACTTGCGCATCCCG-CCCTTCTGGCCGGCTGAGCGCCCGC
*
5727917 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCTTTCCCAGTCTAAGCATACGGAGTTCA
63 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G----
5727982 TTCCCAATTTAAGATCGGACTGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
120 ---CC----------CGGAC-----CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * * * * *
5728047 GGCGTCGCATTTTTCTTTG-CTGGGGAACCATCA-CCGGAGCATCACCGGAGAACCTGACCGACG
167 GGTGCCACATTTTTCTTCGTC-GGCGCACCAT-AGCCGGAGCATCGCCGGAGAACCTGACCGACG
** * * *
5728110 GCATTTGGGTTCCGACGATCGAGGGACCGGGGGGGTGTGCGCACAAGATGTGCAATGGGTGCTAG
230 GCA-TTGGGTTCCG-CGATCG-GGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
5728175 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGATAACTCACACCCCCTTAAAGA
292 TACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
5728240 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
356 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
5728305 TCAAATGCTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
421 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * * * * *
5728370 AAATAAAAGGATCACATCTACCACGTTTAGGGACAAAATTCCTTT-CGAAAAAATTTTAAAAAAT
486 AAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACT-CTTTCCGAAAAAATTTTAAAAAAT
*
5728434 CTCGAACCGTAAAAAGTTTCCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
550 CTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* ** *
5728499 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAA
615 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
* * * * * *
5728564 AATATAAAGATGTGCTTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCTTCCCATCTCC
680 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * * * *
5728629 CTGGCCAGTGTAGTGCCTGCCCATCCGCCTGCTCGTTTTGTCAGTTCGCTTAGGCATACGGAGTT
745 CTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCTCATTTTGTCGGTTCGCTTAGGCATACGGAGTT
* * * * * * * **
5728694 CATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGAAAGATTGACAGCACGC
810 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACAT
* * * *
5728753 AGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCTGCAC
1 AGAGGGGGACCCGACCGAT-CCCGACTTGCGCATCCCGCCCTTCTGGCCGGCTGAGCGCCCGCAC
* ** *
5728818 GCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGCTC-GACCGA
65 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGCCCGGACCGA
* * * *
5728882 GGGTTACGGCAGCACATGCTGGGCTTGGGCATGTGATGGTGCCACATTTTTCTTCGCCGGCGCAC
130 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGCGCAC
* * * *
5728947 CATAGCCAGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGTTCCAGTGAACCGGGGGGACAG
195 CATAGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGTTCC-GCG-ATCGGGGGG-C-G
* *
5729012 GGGGGGTGTGCGCCCATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCTCCCTATCC
256 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCTATCC
* *
5729077 CTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTTCCA
320 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * * *
5729141 GTAGCCATTAAAATTTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTT-
385 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * * **
5729205 TAGGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCCA-AAAGGCT
450 GA-GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTT
* * * *
5729269 GGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTGTCAAAAATCGT
514 GGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCAT
* *
5729334 GAAAAATAGAAAATGAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
579 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * * * * *
5729399 AATTTAGAAGCCATAAAAATGGCATTGGTACCCAGAAATATGAAGATGTGCTTAAAGCCTCCTAC
644 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * *
5729464 CACCCTATCGATCCACGGCTTGCGCTTCCCGTCTCTCTGGTCGGCGTACTGCCTGCCCACCTGCC
709 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCC
* * *
5729529 TGCTCATTTTGTCGGTTCGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
774 CGCTCATTTTGTCGGTTCGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
* * *
5729594 AGGGTTACGGCAGCAGGATCGGTAGCACAT
839 AGGGTTGCAGCAGCAGGATCGGCAGCACAT
* * *
5729624 AGA-GGGGACCCGACCGATCCTCGACTTGCGCATCCCGCCCTTCTAGCTGGCTGAACGCCCGCAC
1 AGAGGGGGACCCGACCGATCC-CGACTTGCGCATCCCGCCCTTCTGGCCGGCTGAGCGCCCGCAC
* *
5729688 GTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGGCCCGGACCGA
65 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGCCCGGACCGA
* * *
5729753 GGATTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTCCTTCGTCGGCGCAC
130 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGCGCAC
* * * * * *
5729818 CATCGCCAGAGCATCGCTGGAGAACCTGACCCG-CAGCATTGTGCTTCCGGTGATCGGGAGGGCC
195 CATAGCCGGAGCATCGCCGGAGAACCTGA-CCGACGGCATTG-GGTTCC-GCGATCGGG-GGG-C
5729882 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
255 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATC
* *
5729947 CCTCATCAAACCTCGAGAACTCAC-CCCTCCTTAAAGAGCATTTGAGATTTTACAGGTCTACTGC
319 CCTCATCAAACCTCGAGAACTCACACCC-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
5730011 CAGTAGCCATCAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
383 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * *
5730076 TCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCTAACAAAAATACGAGGATCACGTCTACCAAGTT
448 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTT
* * * * * *
5730141 TGCGGCTAAAACT-TCTT-CGAAAAAA-TTTAAAAAATCTTGAATCG-CAAAAGTTTTAAAAATC
513 TGGGGCCAAAACTCT-TTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC
* *
5730202 ATG-AAAATAGGAAAA-GAGTCAATCTCGCCATG-AA----ACGTGAAGGCTTAAGGGACCATTG
577 ATGAAAAATA-GAAAACGAGTC-GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * * *
5730260 TATGAATTTACAAGCCATAACAACGGCATCGGCGCATAGAAATATGAAGATGTGCCTAAACCCAC
640 TATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAC
5730325 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACC
705 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACC
* * ** * * * *
5730390 CACCCGCTCGTTTCATCGGTTGGCTTGGGCATACAGAGTTCATTCCCAGTCTAAGAAT-GGACCG
770 CGCCCGCTCATTTTGTCGGTTCGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCGGACCA
* * * *
5730454 GACTGAAGGTTGCAGTAGCAGGATTGGCA--ACAT
834 GACCGAGGGTTGCAGCAGCAGGATCGGCAGCACAT
* * * * *
5730487 GCAGAGGGGCACCCGACCGATCCCCAGCTTGCGTATCCCACCCCTCTGGCCGGCTGAGCGCCCGC
1 --AGAGGGGGACCCGACCGATCCCGA-CTTGCGCATCCCGCCCTTCTGGCCGGCTGAGCGCCCGC
* * *** * * *
5730552 GCGCTTGTTTCGTGGGTTGACTTAATTATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC
63 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGCCCGGACC
** * * ***** *
5730617 GAGGGTTATGGCAGCACATGCTGGGCTCGGGCATCTGCTAGAAATGCATTTTTCTTCGTCGGGGC
128 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGCGC
* * * * * *
5730682 ACCATCGTCGGAGCATCGTCGGAGAAACTGACCGGCGGCATTGGGGTTCCGACAATCGGGGGGGC
193 ACCATAGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATT-GGGTTCCG-CGATC-GGGGGGC
* * * * *
5730747 CGGGGGGTGTGCGCACATGATATGCAATGGGTGCTGGTACATGGCCCTTATATTGGCCCTGTATC
255 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATC
* *
5730812 CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCT
319 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * * *
5730877 ACTAGCCAATAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACACAATCTTGTACAGTT
384 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* ** * * *
5730942 CGAGTTTTTAGTTGAATTTTTTTGTGCATGTGAAAAAAAATACAGGGATCATGTCCACCAAGTTT
449 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTT
* * * * **
5731007 GGGGCCAAAACCCGTTCCGAAAAAATTTTAAAACATCTCGAACCGTAAAAGGTTTTGAAAATCAT
514 GGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCAT
* * *
5731072 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTTTATG
579 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
5731137 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAATATGAAGATGTGCCTAAACCCACCTA
644 AATTTACAAGCCATAAAAATGGCATTGGCACACAG-AAATATGAAGATGTGCCTAAACCCACCTA
* * * *
5731202 CCAACCTATCGATCCATGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
708 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGC
* * *
5731267 CCG----TTTCGTCGGTTGGCTTAGGCATATGGAG
773 CCGCTCATTTTGTCGGTTCGCTTAGGCATACGGAG
5731298 AACCTGACCG
Statistics
Matches: 2990, Mismatches: 371, Indels: 170
0.85 0.11 0.05
Matches are distributed among these distances:
863 4 0.00
864 3 0.00
865 460 0.15
866 211 0.07
867 20 0.01
868 32 0.01
869 27 0.01
870 161 0.05
871 536 0.18
872 407 0.14
873 157 0.05
874 188 0.06
875 2 0.00
877 4 0.00
878 2 0.00
885 1 0.00
888 1 0.00
895 5 0.00
896 1 0.00
897 1 0.00
898 7 0.00
899 171 0.06
900 108 0.04
901 249 0.08
902 17 0.01
903 215 0.07
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (868 bp):
AGAGGGGGACCCGACCGATCCCGACTTGCGCATCCCGCCCTTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGCCCGGACCGAG
GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGCGCACC
ATAGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGTTCCGCGATCGGGGGGCGGGGGG
GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATC
AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCA
AAACTCTTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCTCAT
TTTGTCGGTTCGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
CAGCAGCAGGATCGGCAGCACAT
Found at i:5732075 original size:26 final size:26
Alignment explanation
Indices: 5732045--5732094 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
5732035 GACTTAGTCC
*
5732045 TACGGAGTTCATTCCTAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
5732071 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
5732095 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:5733860 original size:26 final size:26
Alignment explanation
Indices: 5733830--5733882 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5733820 GTTCAGTTAG
5733830 GCATAAAGAGTTCATTCCCAGTATAA
1 GCATAAAGAGTTCATTCCCAGTATAA
** *
5733856 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAAGAGTTCATTCCCAGTATAA
5733882 G
1 G
5733883 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATAAAGAGTTCATTCCCAGTATAA
Found at i:5734485 original size:900 final size:895
Alignment explanation
Indices: 5731294--5734624 Score: 4629
Period size: 899 Copynumber: 3.7 Consensus size: 895
5731284 TTAGGCATAT
* * * *
5731294 GGAGAACCTGACCGGCGACATTAGGGTTCCAACGATC-GAGGGGGTCGAGGGGGTGTGCGCATAT
1 GGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGA-GGGGCCG-GGGGGTGTGCGCACAT
* * * *
5731358 GTTGTGCGATGGGTGCTGGTACTTGGCCTTTATATCGGCCCCCTATCCCTCATCAAACCTTGAGA
64 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
5731423 ACTCACACCCCCTTGAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
129 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
5731488 TGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAATT
194 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
** * *
5731553 TTTTAATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCT
259 TTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* **** * *
5731618 GAAAAAATTTTAAAAAATCTCAAATTGTAAAAAGGTTTGAAAATCGTGAAAAATAGAAAATGAGT
324 AAAAAAATTTTAAAAAATCTCAAACCACAAAAA-GTTTAAAAATCGTGAAAAATAGAAAACGAGT
* *
5731683 CATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
388 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
**
5731748 ATGGCATTGCCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
453 ATGGCATTGCCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
5731813 CTTACGCATCCCGTCTCTCTGGCCGGCGTAATGCCTG-CGGCCCACCCGCTCGTTTCGTCGGTTG
518 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTG
* * * * *
5731877 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGTGGCAGTAGGA
583 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCAAGGGTTGCGGCAGTAGGA
* * *** ** * *
5731942 TCAACAGCACGCATAGAAAGACTCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
648 TCGACAGCACGCAGAGGGGGACTC-GAAGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
5732007 GAGCGCCTGCACT-CTCGTTTCATGGGTTGACTTAGTCCTACGGAGTTCATTCCTAGTCTAAGCA
712 GAGCGCC-GTA-TGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCA
* * * *
5732071 TACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCCCATGCTGGGCGC
775 TACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCACATGCT-GGCTC
* * * *
5732136 GGGCATATGCTGGTGCTGTATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCACC
839 GGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATC
* * * *
5732193 GGAGAAACTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGATGTGCGCACATG
1 GGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGAGGGGCCGGGGGG-TGTGCGCACATG
* *
5732258 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCGTCAAACCTCGAGAA
65 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
5732323 CTCACACCCCCTTAAAGAGCATTTGAGATTTTCCAGGTTTGCTACCAGTAGCCATTAAAGTGTCT
130 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * ** *
5732388 AAAATGGGAACACTTTTTTTGAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTT
195 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
5732453 TTTTGTGCACGCCAACAAAATTACAA-GATCATGTCTACCAAGTTTGCGGCCAAAACTCCTTCCA
260 TTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
* *
5732517 AAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACTAGTC
325 AAAAAATTTTAAAAAATCTCAAACCACAAAAAGTTT-AAAAATCGTGAAAAATAGAAAACGAGTC
* *
5732582 GTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAA
389 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
5732647 TGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGC
454 TGGCATTGCCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
5732712 TTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTTGTCGGTTGG
519 TTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGG
* * * *
5732777 CTTAGGCATACGGAGTTCATTCCCAGTCTTAGATTAGACCGGATCAAGGGTTGCGGCAGCATGAT
584 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCAAGGGTTGCGGCAGTAGGAT
* * * * ** *
5732842 CGGC-GACACGCAGAAGGGGG-CCCAGCCAA-ACCCTGA-CTTGCATATCCCGTCCCTCTGGCCG
649 CGACAG-CACGCAG-AGGGGGACTC-G--AAGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
5732903 GCTGAGCGCCCGTACGCTCGTTTAATGGGTTGACTTAGGCATACGGAGCTCATTCCTAGTCTAAG
709 GCTGAGCG-CCGTATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG
* * * * * **
5732968 GATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGCAGCAGGTGCTAGGC
773 CATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCACATGCT-GGC
5733033 TCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATC--C----C--CAT-
837 TCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATC
* * * *
5733083 --AGAACCTGACCGGCGGTATTGGGGTTTCGACAATCGG-GGGGCCGGGGGGGTGTGCGCACATG
1 GGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGAGGGGCC-GGGGGGTGTGCGCACATG
*
5733145 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
65 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
5733210 CTCACACCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
130 CTCACACCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
5733275 TGAAATGGGGATACTTTTTTCAAACGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATT
194 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
5733340 TTTTTGTGCATGCCAATAAAAACAGAAGGATCATGTCTACCAGGTTTGGGGCCAAAACTCCTTCC
259 TTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * *
5733405 GAAAAAATTTTAAAAAATCTCAAACCATAAAAAGGTTTGAAAATCATGAAAAATAGAAAACGAGT
324 AAAAAAATTTTAAAAAATCTCAAACCACAAAAA-GTTTAAAAATCGTGAAAAATAGAAAACGAGT
* * *
5733470 CGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCAATAAAA
388 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
** * * * * *
5733535 ATCACATTGGCACATAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCAATCCATGG
453 ATGGCATTGCCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * *
5733600 CTTGCGCATCTCGTCTCTCTGGCTGGCGTAAAGCCCGCCCGCCCGTCCGCTCATTTTGTTGGTTG
518 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTG
* * * *
5733665 GCTTAGGCATACGGAGTTCACTCCCAGTCTAA-AGTTAGACCAGACCGAGGGTTGCGGTAGTAGG
583 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TTAGACCGGACCAAGGGTTGCGGCAGTAGG
* *
5733729 ATCGATAGCACGCAGAGGGGGACTCGAATGATCCTCAGCTTTCGCATCCCGCCCCTCTGGCCGGC
647 ATCGACAGCACGCAGAGGGGGACTCGAA-GATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * ** * *
5733794 TGAGCGCTCGTATGCTCGTTTCATGGGTTCAGTTAGGCATAAAGAGTTCATTCCCAGTATAAGCA
711 TGAGCGC-CGTATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCA
5733859 TACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCACATGCTGGACTC
775 TACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCACATGCTGG-CTC
* * * *
5733924 GGGCATGTGCTGGTGCCATTTTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCATC
839 GGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATC
* * * * * *
5733981 GGAGAACCTGACCGGTGGCATTAGGGTCCCGATGATCGGAGGGGTCGGGGGGTGTACGCACATGG
1 GGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGCGCACATGA
* * *
5734046 TGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCAAGAAC
66 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
5734111 TCACACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTG
131 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
5734176 AAATGGGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTT
196 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
5734241 TTTGTGCATTACCAACAAAAATACAAGGATCATGTATACCAAGTTTGGGGCCAAAACCCCTTCCA
261 TTTGTGCA-TGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
* * *
5734306 AAAAAATTTTAAAAAATC-CTGAGCCACAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGT
325 AAAAAATTTTAAAAAATCTC-AAACCACAAAAAGTTT-AAAAATCGTGAAAAATAGAAAACGAGT
5734370 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA-TTACAAGCCATAAAA
388 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
5734434 ATGGCATTGCCACACAGAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
453 ATGGCATTGCCACACAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
5734499 GCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCTCCCGCAGCTCGTTCTGTCG
517 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCC-GCC-C-GCTCGTTTTGTCG
* *
5734564 ATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGG
579 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCAAGGGTTGCGG
5734625 TAGCACATGC
Statistics
Matches: 2142, Mismatches: 248, Indels: 80
0.87 0.10 0.03
Matches are distributed among these distances:
886 2 0.00
887 91 0.04
888 184 0.09
889 504 0.24
890 5 0.00
891 3 0.00
893 1 0.00
895 1 0.00
897 8 0.00
898 247 0.12
899 668 0.31
900 356 0.17
901 6 0.00
902 1 0.00
903 64 0.03
904 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
GGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
AAAAATTTTAAAAAATCTCAAACCACAAAAAGTTTAAAAATCGTGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGCCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
GCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCAAGGGTTGCGGCAGTAGGATCG
ACAGCACGCAGAGGGGGACTCGAAGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCGTATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGA
GTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCACATGCTGGCTCGGGCATG
TGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATC
Found at i:5735290 original size:719 final size:718
Alignment explanation
Indices: 5733856--5735339 Score: 2314
Period size: 719 Copynumber: 2.1 Consensus size: 718
5733846 CCCAGTATAA
* **
5733856 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGA
** * * *
5733921 CTCGGGCATGTGCTGGTGCCATTTTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCAGGGCACCAACGCCGAAGCATCATCGGAGA
** * * **
5733986 ACCTGACCGGTGGCATTAGGGTCCCGATGATCGGAGGGGTCGGGGGGTGTACGCACATGGTGTGT
131 ACCTGACCGACGGCATTAGGGTCCCGATGATCGGAGGGGCCGGGGGGTGTACGCACATGATGCAT
*
5734051 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCAAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
5734116 CCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
261 CCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATA
5734181 GGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGT
326 GGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGT
*
5734246 GCATTACCAACAAAAATACAAGGATCATGTATACCAAGTTTGGGGCCAAAACCCCTTCCAAAAAA
391 GCATTACCAACAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAACCCCTTCCAAAAAA
* * ** *
5734311 ATTTTAAAAAATCCTGAGCCACAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
456 ATTTTAAAAAATCCTGAACCACAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCATCTT
* *
5734376 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTACAAGCCATAAAAATGGCAT
521 ACCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTACAAGCCATAAAAATGGCAT
5734441 TGCCACACAGAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
586 TGCCACACAGAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
5734506 CATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCTCCCGCAGCTCGTTCTGTCGATTGGCT
651 CATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCCCAGCTCGTTCTGTCGATTGGCT
5734571 TAG
716 TAG
* *
5734574 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGTAGCACATGCTGTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTG-G
* * * *
5734639 -CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAACGCCGAAGCATCGTCGGAG
65 ACTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCAGGGCACCAACGCCGAAGCATCATCGGAG
** * *
5734703 AACCTGACCGACGGCATTAGGGTTTCGGTGATCGG-GGGGCCGAGGGGGGTGTGCGCACATGATG
130 AACCTGACCGACGGCATTAGGGTCCCGATGATCGGAGGGGCC--GGGGGGTGTACGCACATGATG
*
5734767 CATGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
193 CATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
*
5734832 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
5734897 ATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTGTTTT
323 ATAGGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAAT-TTTT
* * * * *
5734962 TTGTGCA-TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAGAACTCCTTCCAA
387 TTGTGCATTACCAACAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAACCCCTTCCAA
* * **
5735026 AAAAATTTTGAGAAATCCTGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCA
452 AAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCA
5735091 TCTTACCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTACCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAA-TTACAAGCCATAAAAAT
* ** *
5735156 GGCATTGGCATGCA-AAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
581 GGCATTGCCACACAGAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
5735220 TTGCG-ATCCCGTCTCTCTGGCCGGCCTAGTGCCCGCCCGTCCGCCCTCCCGCTTGTT-TCGTCG
646 TTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCC-CCAGCTCGTTCT-GTCG
*
5735283 GTTGGCTTAG
709 ATTGGCTTAG
5735293 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
5735340 ACGACAGTAG
Statistics
Matches: 697, Mismatches: 62, Indels: 13
0.90 0.08 0.02
Matches are distributed among these distances:
717 5 0.01
718 181 0.26
719 472 0.68
720 39 0.06
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (718 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGA
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCAGGGCACCAACGCCGAAGCATCATCGGAGA
ACCTGACCGACGGCATTAGGGTCCCGATGATCGGAGGGGCCGGGGGGTGTACGCACATGATGCAT
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
CCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATA
GGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGT
GCATTACCAACAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAACCCCTTCCAAAAAA
ATTTTAAAAAATCCTGAACCACAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCATCTT
ACCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTACAAGCCATAAAAATGGCAT
TGCCACACAGAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCCCAGCTCGTTCTGTCGATTGGCT
TAG
Found at i:5735377 original size:26 final size:26
Alignment explanation
Indices: 5735327--5735380 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
5735317 AAGATCAGAC
*
5735327 CGGACCGAGGGTTACGACAGTAGGAT
1 CGGACCGAGGGTTACGACAGCAGGAT
** *
5735353 CGGACCGAGGGTTGTGGCAGCAGGAT
1 CGGACCGAGGGTTACGACAGCAGGAT
5735379 CG
1 CG
5735381 ATAGCACACA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.22, C:0.20, G:0.43, T:0.15
Consensus pattern (26 bp):
CGGACCGAGGGTTACGACAGCAGGAT
Found at i:5736793 original size:26 final size:26
Alignment explanation
Indices: 5736764--5736861 Score: 135
Period size: 26 Copynumber: 3.8 Consensus size: 26
5736754 CTAAGATCGG
5736764 ATCGGACCGAGGGTTGCGGCAGTAGT
1 ATCGGACCGAGGGTTGCGGCAGTAGT
*
5736790 ATCGAACC-AGGGTTGCGGCAGTAGT
1 ATCGGACCGAGGGTTGCGGCAGTAGT
* * *
5736815 ATCAGACCGAGGGTTGCGACAGCAGT
1 ATCGGACCGAGGGTTGCGGCAGTAGT
* *
5736841 ATCGGATCGAGGGTTGTGGCA
1 ATCGGACCGAGGGTTGCGGCA
5736862 ACAGGATCGG
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
25 23 0.37
26 39 0.63
ACGTcount: A:0.22, C:0.19, G:0.39, T:0.19
Consensus pattern (26 bp):
ATCGGACCGAGGGTTGCGGCAGTAGT
Found at i:5736870 original size:26 final size:26
Alignment explanation
Indices: 5736822--5736871 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
5736812 AGTATCAGAC
* *
5736822 CGAGGGTTGCGACAGCAGTATCGGAT
1 CGAGGGTTGCGACAACAGGATCGGAT
* *
5736848 CGAGGGTTGTGGCAACAGGATCGG
1 CGAGGGTTGCGACAACAGGATCGG
5736872 TAGCATGCAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.22, C:0.18, G:0.42, T:0.18
Consensus pattern (26 bp):
CGAGGGTTGCGACAACAGGATCGGAT
Found at i:5740347 original size:26 final size:26
Alignment explanation
Indices: 5740311--5740363 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5740301 GTTGACTTAG
5740311 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
5740337 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5740363 G
1 G
5740364 ATCGGATAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5740615 original size:899 final size:903
Alignment explanation
Indices: 5737644--5744675 Score: 9247
Period size: 899 Copynumber: 7.8 Consensus size: 903
5737634 GTTGGCTTAG
* * * * *
5737644 GCATACGGATTTCATTCCCACTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * *
5737709 CTCGAGCATGTGTTGGAGCCGTATTTTTCTTCG-TCGAGGCACCATTGTCGGAGCATCATCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTCGAGGCACCATCGTCGGAGCATCACCGGAG
* *
5737773 AACCTAACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGGTGTGCGCACATGATG
131 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATG
*
5737838 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
5737903 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTTTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
5737968 ATGGGGACGCTTTGTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
5738032 TTTGCATGCCAAAAAAAATACAAGGGTCACGTCTACCAAGTTTGGGGCCAAAACACCTTCTGAAA
389 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
5738097 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTCAAAAATAGAAAACGAGTCATC
454 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
5738162 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
5738227 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
584 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * *
5738292 CGCATCCCGTCTCTTTGGCCGGCGTAGTACCCGCCTG-TTCGCTCGCCCGCTTGTTTCTTTGGTT
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCT-GCCCG-CCGCTCGTTTCGTCGGTT
* * * * *
5738356 GACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGAT-AGGACCAAGGGTTACGACAGCAG
712 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCA-GACCGAGGGTTGCGGCAGCAG
* * * * ** ** **
5738420 GATTGGCAACATGCAGA-GGGGACCCGGTCTATCCTTGGCTTGCGCATCCTGCTGCTCTGGCTAG
776 GATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGG
* *
5738484 CTGAACGCCCGCACGCTCGTTT-GTTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
841 CTGAGCGCCCGCACGCTCGTTTCG-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
5738547 GCATATGGAGTTCATTCCCAGTCTAAGATCAGG-CCAGACCGAGGGTTGCGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCGGACCGAGGGTTGCGACAGCACATGCTGG
* * * * * *
5738611 GCTCGGGCCTATGCTGGTGCCGTATTTTTCTTCAC-CGGGGTACCA---TC---G--T---CGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTCGAGGCACCATCGTCGGAGCATCACCGGA
* * * ** *
5738664 GAACCTGACCGATGGCATTGGGGTTTCGTCGATCGGGGGGGCCGGGGGGTGTTTGCAGATGATGT
130 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
*
5738729 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
5738794 CACGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGGAGCCATTAAAGTGTC-GAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AA
* * *
5738858 ATGGGGACATTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * ** * * * * *
5738923 TGTGCAAGCCCAAAAAAATACAAAAATCATGTCTACCAAGTGTGGGGCCGAAACTCCTTTCAAAA
389 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
**
5738988 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTATC
454 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
5739053 TTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGGATTTACAAGTCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
5739118 CATTGGCATGCAGAAATATGAAGAAGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
584 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * *
5739183 CGCATCCCATCTCTCTGGCCAGCGTAGTGCCTGCCTGCCCGCCTGCCTGCTTGTTTCTTCGGTTG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCC-GCTCGTTTCGTCGGTTG
* * * * * * ** * **
5739248 GCTTAGGCATATGGAGTTTATTCCCTGTCTAAGATCAGA-CTGGACCAATCGTTACGGCAGTGGG
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AGACCGAGGGTTGCGGCAGCAGG
* * * * * * ***
5739312 ATCAGCAACACGCAGAGGGGGACCTGGCCAATCCCCGGCTTACGCAT-CTCGCCCCTCTCATCGG
777 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCGG
* * * * *
5739376 CTGAGCACCCGTACGTTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTGTAA
841 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
5739439 GCATGCGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
** * * *
5739504 CTCGAACATGTGCTGGTGCTGCATTTTTCTTCAC-CGAGGCACCATCGTCGGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTCGAGGCACCATCGTCGGAGCATCACCGGAG
* * *
5739568 AACTTGACCGGCGGCATTGGGGTTCCGACGATC-CGGGGGCCGGGGGGTGTGCGCACATGATGTG
131 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
5739632 CGATTGGTGCTGGAACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
5739697 ACCCCCTTAAAGAGCATTTGA-ATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAATT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5739761 GGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGATTTTTTAGCTGAA-TTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
5739825 TGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAA
391 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
**
5739890 ATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
456 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
5739955 GCCATGAAACGTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
5740020 TTGGCACACAGAAATATGAA-ATATGCCTAAACCCACCTTCCACCCTATCAATCCACGGCTTGCG
586 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
5740084 CATCCTGTCACTTTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCC-CAGTCATTTCGTCAGTTGG
651 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCGC--TCGTTTCGTCGGTTGG
* * *
5740148 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCGGATCAGACTGAGGGTTGCGGCAGCATGAT
714 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAGGAT
* * * ** * * *
5740213 CGGCAGCACGCAGA-AGGGACCCGATCAATCCCCTACTTGTGCATCCTGCCCCTCTAGCAGGCTG
779 CGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
* *
5740277 AGCACCCAG-ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
844 AGCGCCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
**** * *
5740337 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATAAAACTGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * ** *
5740402 CTTGGGCATGTGCTGGTGTCACATTTTTCTTCGCT-GAGGCACCATCGTCGGAGCATTGCCAGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTCGAGGCACCATCGTCGGAGCATCACCGGAG
* * * *
5740466 AACCTGATCGGCAGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTG
131 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
5740531 CGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
5740596 AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
5740661 GGCGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTA
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
5740726 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAACTCCTTCCAAAAAA
391 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * ** * * *
5740791 ATTTTAAAAAATCCCAAACTGTGAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTT
456 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * *
5740856 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCATAGGCCATAAAACTGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* ** * *
5740921 TTGGCGCATAGAAATATGACGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
586 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** * *
5740986 CATCCCGTCTCTCTAGCCGAAGTAGTGCCCGCCCGTCTG--C-CCGCTCATTTCGTCGGTTGGCT
651 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCGCTCGTTTCGTCGGTTGGCT
* * * *
5741048 TAAGTATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCGGCAGCAGGATCG
716 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAGGATCG
* * ** *
5741113 GTAGCACGCAGAGGGGGACTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
781 GCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
* * *
5741178 CGCCCGCTCGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
846 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * **
5741236 GCATACGAAGTTAATTCCCAGTCTATGATCGAACCGGACTAAGGGTTGC-AGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCACATGCTGG
* ** * * * * * * *
5741300 GCTTGGGCATGTTTTGGTGTCACATTTTTC-TC-CATCGGGGCACGATCGCCGGAGTATCACCAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGC-TCGAGGCACCATCGTCGGAGCATCACCGG
* ** *
5741363 AGAACCTGACCAACGGCATTGGGGTTCC-AGCGATCAAGGGGGTCGGGGGGTGTGCGCACATGAT
129 AGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
* *
5741427 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
5741492 CACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAACGTGTCTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
5741557 AATGGGGACACTTTTTTCAAATAGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
5741622 TTGTTCATGCCAAAAAAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCAAAAACTCCTTCCG
388 TTGTGCATGCC--AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
*
5741687 AAAAAATTTTAAAAAATCCCGAACCG-TAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
451 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
5741751 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGCG-CCATTGTATGAATTTACAAGCCATAAAA
516 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG-GACCATTGTATGAATTTACAAGCCATAAAA
* * *
5741815 ATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCAACTACCACCCTATCGATCCACGG
580 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * **
5741880 CTTGCGCATCCCGCCTCTCTGGCCGGTGTAGTGCCTGCCCG--T-----CTGCTCACTTCGTCGG
645 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCGCTCGTTTCGTCGG
* * * *
5741938 ATGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTA
710 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCA
* * * * * * *
5742003 GGATCAGTAGAACACAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCG
775 GGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCG
* * * * **
5742068 GCTGAGCGCCCGCATGTTCGTTCCGTGGGTTGACTTAGGTATACGGAGTTCATTTTCAGTC-AA
840 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** ** *
5742131 GCATACAGAGTTCGTTCCCAGTCCAAGATCAGATTGGTGCGAGGGTTGC-AGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCACATGCTGG
* * * * * * *
5742195 GCTTGTGCATGTGCTGGTGCCGCATTTTCCTTC-ATCGAGGCACCATCGTCGAAGCGTCACCAGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTCGAGGCACCATCGTCGGAGCATCACCGGA
* *
5742259 GAACCTGACCGACGGCATTGGGGTT-CTAGCGATCGGGGGGGTC-GGGGGTGTGCGCACATGATG
130 GAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
** *
5742322 TGCGATGGGTGCTGGTACTTGTTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACAC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
5742387 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGTCAGTAGCCATTAAAGTGTCTAAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
5742452 ATGGGGATAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
5742516 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
389 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * * * * *
5742581 ACATTTTAAAAAATCTC-AAAC-CACACAGTTTCAAAAATTGTGAAAAATGGAAAATGAGTCGTC
454 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
5742644 TCG-CATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTT-CAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
5742707 CATTGGCATGCAGAAATAAT-AAGATGTGCCTAAACCCACCAACCACCCGATC-ATCCAC-GCTT
584 CATTGGCACGCAGAAAT-ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
5742769 GCGTATCCTGTCTCTCTGGCCGGTGTAGTGCCCG-CCG--T--CCGCCCGCTCGTTTCGTCAGTT
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCG-CCGCTCGTTTCGTCGGTT
* * *
5742829 GGCTTAGGCATACGGAGTTCATTTCCC-GTCTAAGATTGGACCAGACCGAGGGTTGCGTCAGCAG
712 GGCTTAGGCATACGGAGTTCA-TTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAG
* * *
5742893 GATCGGCAGCACGCAGAGGGGGACCTGGTCGATCCCCAGCTTGTGCAT-CTCGCCCCTCTGGCCG
776 GATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCG
*
5742957 GCTGAGCGCCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * *
5743021 GCATATGGAGTTCATTCCCAGTCTAAGATTGGATTGGACCAAGGCTTGC-ACTAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGAC-AGCACATGCTGG
* * * *
5743085 GCTCGGGCATGTGCTGGTGTCACTTTTTTCTTCGC-C-AGGGCACCATCGCCGGAGCATCACCGG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTCGA-GGCACCATCGTCGGAGCATCACCGG
* **
5743148 AGAACCTGACCGACGGCATTAGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
129 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* * * *
5743213 TGCGATGGGTGCTAGTTCTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
5743278 ACACCCCCTTAAAGAGCATTTGTGATTTTACAGGTTTGTTGCCAGTAGCCATTAATGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
5743343 ATGGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGATTTTTTAGCTCAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
5743408 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTGCTTTCGAAA
389 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * * * *
5743473 ACATTTTAAAAAATCTCGAA-C-CACACAGTTTCAAAAATTGTGAAAAATGGAAAATGAGTCGTC
454 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
5743536 TCGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTCCAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
5743601 CATTGGCATGCAGAAATAAT-AAGATGTGCCTAAACCCACCAACCACCCGATCGATCCACGGCTT
584 CATTGGCACGCAGAAAT-ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
5743665 GCGTATCCTGTCTCTCTGGCCGGTGTAGTGCCCG--C-CC-G--C-CCGCTTGTTTCGTCAGTTG
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCGCTCGTTTCGTCGGTTG
* * * *
5743723 GCTTAGGCATACGGAGTTTATTTCCC-GTCTAAGATTGGACCAGACCGAGGGTTGCAGCAGCAGG
713 GCTTAGGCATACGGAGTTCA-TTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAGG
* * * *
5743787 ATCGGCAGCACGCAGAGGGGGACCTGGTCGATCCCCAGCTTGTGCATCCCGCCCCTCTGGCCGGC
777 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGC
5743852 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
5743914 GCATATGGAGTTCATTCCCAGTGTAAGATCGGACGGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
5743979 CTCGGGCATGTGCTGGTGCCGCAGTTTTT-TT-G-TCGGGGCACCAACG-CTGAAACATC-CTCG
66 CTCGGGCATGTGCTGGTGCCGCA-TTTTTCTTCGCTCGAGGCACCATCGTC-GGAGCATCAC-CG
* * * * * *
5744039 GAGAACCTAATCGGCGGCATTGGGGTTCCGACGATCGGGGGAG-CTGGGGGTGTGTGCACATGAT
128 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
** * *
5744103 GTGCGATGGGCACTGATA-TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
5744167 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
5744232 AATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
5744297 TAGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAGTCCTTCTGAA
388 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
** *
5744362 AAAATTTTAAAAAATTTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGT
453 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
5744427 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA-CAGATATAAAT
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC-CATAAAAAT
* *
5744491 GGCATTGGCACACAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
582 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * ** *
5744556 TGCGCATCCTGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCACCCACTCGCTCGTTTCGTCGGT
647 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGC-CGCTCGTTTCGTCGGT
* *
5744621 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACTGAGGGTT
711 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTT
5744676 ACAATAGCTC
Statistics
Matches: 5433, Mismatches: 606, Indels: 183
0.87 0.10 0.03
Matches are distributed among these distances:
885 4 0.00
886 34 0.01
887 6 0.00
888 63 0.01
889 218 0.04
890 626 0.12
891 614 0.11
892 635 0.12
893 387 0.07
894 225 0.04
895 150 0.03
896 220 0.04
897 3 0.00
898 325 0.06
899 709 0.13
900 544 0.10
901 362 0.07
902 181 0.03
903 125 0.02
904 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (903 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTCGAGGCACCATCGTCGGAGCATCACCGGAG
AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAGGATCG
GCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5741240 original size:26 final size:26
Alignment explanation
Indices: 5741210--5741260 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
5741200 GTTGACTTAG
*
5741210 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTAATTCCCAGTCTAA
5741236 GCATACGAAGTTAATTCCCAGTCTA
1 GCATACGAAGTTAATTCCCAGTCTA
5741261 TGATCGAACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTAATTCCCAGTCTAA
Found at i:5743031 original size:26 final size:26
Alignment explanation
Indices: 5742995--5743047 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5742985 TTTGACTTAG
5742995 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5743021 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5743047 G
1 G
5743048 ATTGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5743924 original size:26 final size:26
Alignment explanation
Indices: 5743888--5743940 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5743878 GTTGACTTAG
5743888 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
5743914 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5743940 G
1 G
5743941 ATCGGACGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5746397 original size:26 final size:26
Alignment explanation
Indices: 5746367--5746419 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5746357 GTTGACCTAG
5746367 GCATGCGGAGTTCATTCCCAATCTAA
1 GCATGCGGAGTTCATTCCCAATCTAA
*
5746393 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATGCGGAGTTCATTCCCAATCTAA
5746419 G
1 G
5746420 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATGCGGAGTTCATTCCCAATCTAA
Found at i:5748622 original size:869 final size:870
Alignment explanation
Indices: 5744605--5750616 Score: 7326
Period size: 876 Copynumber: 6.9 Consensus size: 870
5744595 CCCACCCACT
* * * * * *
5744605 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACTG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* * * * * * *
5744670 AGGGTTACAATAGCTCATACTGGCCTTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCA
66 AGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
** * * * * * **
5744735 CCATCGTCGGAGCATTGCCAGAGAACCTGACCGGTGGTATTGGGGTTACGGTGATCGGGGGGCCG
131 CCATCACCGAAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-
* * * * * * * * *
5744800 GGGGGGCTGTACTCACATGATGTGCAATGGGTGCTGATACTTGGCCCTCATATTGGGCCCATATC
195 CGGGGGATGTGCAC-CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
5744865 CCTCATCAAACCTTGAGAACACACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
259 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
5744929 AGTAGCCATTAAAGTGTCTAAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
324 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * * *
5744994 CAAGTTTTTAGCTGAATTTTTTTGTGCTTGCCAAAAAAAATACAAGGATCACGTCTACGATGTTT
389 CGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * ** * * * *
5745059 GGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTTGAACTGCAGAAAGTTTCAAAAATCGT
454 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCAT
* * * * *
5745124 AAAAAATAGAGAACAAGTTGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATG
519 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
5745189 AATTTACGAGCCATAAAAATGGCACTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTAC
584 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
** ** * *
5745254 CACCCTATTAATCCATGGCTTGTACATCCCGTCTCTCTGGCCGGCATAATGCCCGCCCGCCCGCC
649 CACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCG-CCGCCCGCC
* *
5745319 CACTCGTTTTC-TCGGTTGGCTTAGGCA-ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
712 CGCTCG-TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
* ** * * * * *
5745382 GA-GGTTGC-GACACCAGGATCGGTAGCACGTAGAGGGGAACCCGATCGATCCCTGGCTTACGCA
776 GAGGGTTGCAG-CAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
* *
5745445 TCCCGCCCCTCTGGCTGACTGAGCGCCCGCA
840 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
5745476 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
** * **
5745541 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCA
66 AGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * * *
5745606 CCAT----------T-GCCGGAGAACCTGACCGGTGGCATTGGGGTTCCGATGATCGAGGGGGTC
131 CCATCACCGAAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCC
* * * * *
5745660 GGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCTCCCTAT
195 CGG-GGGATGTGCAC-CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
5745725 CCCTCATC-AACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTTGCTG
258 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTGCTG
* *
5745789 CCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCAC
322 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * ** * *
5745854 TTCGAGTGTTTAGCTGAATTTTTTTGTGCATGCCAACAAAATTACAAGGATCATTTCTACAAAAT
387 TTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * *
5745919 TTAGGGCCAAAACTCCTTTC-GAAAAATTTTACAAAATCCCGAACCGCAAAAAGTTTCCAAAATC
452 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATC
* * *
5745983 GTCAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTA
517 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*** * * **
5746048 TGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATGTGAAGATGTGTCTAAACCTGCCT
582 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
5746113 ACCACCCTATCGATCCACGGCTTGCGCATCCTGGCTCTCTGGCCGACGTAGTGCCCGGTCGCTCG
647 ACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C---CGC-CG
*
5746178 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATC-GAAC
706 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-AC
* * * * *
5746242 CGGACCGAGGGTTGCGGCAGCATGAT-TAGCAGCACGCAGAGGGGGACCC-AGCCTATCCCCGAC
770 CGGACCGAGGGTTGCAGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGC
* * * *
5746305 TTGAGCATCTC-ACCCTACTGGCCGGCTGAGCGCCCGTA
833 TTGCGCATCCCGCCCCT-CTGGCCGGCTGAGCGCCCGCA
* * * *
5746343 CTCTAGTTTCATGGGTTGACCTAGGCATGCGGAGTTCATTCCCAATCTAAGCATGCGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGA-CT-----T----AG----------------GCATACGGAGTTCAT
* * * *
5746408 TCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGACAGCACGTGCTGGGCTCGGGCATGTGCTG
40 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTG
* ** * ** *
5746473 GTGCCGCATTTTTCTTCGTCAGGGCACCATCGTCGAAGCATTGCCAGAGAACCTGA-CGAAGGTA
105 GTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCGCCAGAGAACCTGACCGGCGGCA
* * *
5746537 TTGGGGTTCCGACGATCAGGGGGG-CCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTA
170 TTGGGGTTCCGACGATC-GGGGGGCCCGGGGGATGTGCAC-CATGATGTGCGATGGGTGCTGGTA
**
5746601 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATGTCGAGAACTCACACCCCCTTAAAGAGC
233 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
5746666 ATTTAAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTC
298 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
5746731 GAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCT-AAATTGTTTTGTGCATGCCAACAAA
363 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATT-TTTTGTGCATGCCAACAAA
* * * *
5746795 AATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCGAAAAAAATTTTCAAAAATCC
427 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
* * *
5746860 CGAACCGTAAAAAGTTTC-AAACATCTTGAAAAAGAGAAAACGAGTCGTCTTGCCATGAAACTTC
492 CGAACCGCAAAAAGTTTCGAAA-ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* **
5746924 ACATGAAGGCTTAAAAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
556 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
*
5746989 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGCATCCCGTCTCTC
621 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTC
* * *
5747054 TGGCCGGCGTAGTGCCCGCTCGGCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATGCGGA
686 TGGCCGGCGTAGT----GC-C-GCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * *
5747119 GTAT-ATTCCCAATCTAAGATCAGATCAGACCAAGGGTTACGGCAGCAGGATCGGCAGCACGCAG
745 GT-TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAG
* * * * * * *
5747183 AGGGTGACCCGACCGATCCTCGACTTGCGCATCCTGCCCCTCTGGCCGACTGAGCACCCACA
809 AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* **
5747245 CGCTCGTTTCATGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGGACTA
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* * * * * **
5747309 AGGGTTGCAGCT-GCACATGCTGGGCTTGTGCATGTGCTGGTGCCGTAATTTTT-TACGTCGATG
66 AGGGTTGC-GATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG-CATTTTTCTTCGTCGGGG
* * * * *
5747372 CACCATCATCGGAGCATCACC-GAAGAATCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGG
129 CACCATCACCGAAGCATCGCCAG-AGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGG
* * * * *
5747436 GCCGGGGGGTGTGTGCA-CATGATGTGCAATGGCTGCTGGTACTTGGGCCTTATATTGGCCCCCT
192 GCCCGGGGG-ATGTGCACCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* ** * *
5747500 ATCCCTCATCAAACCTCCAGAACTCACACCCATTTAAAGAGCATCTGAGATTTTATAGGTTTGCT
256 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
5747565 GCCAGTGGCCTTTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
321 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
5747630 CTTCGAGTTTTTAGCTG-AATTGTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
386 CTTCGAGTTTTTAGCTGAAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * *
5747694 GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTTAAAAATCCCGAAGCACAAAAAGTTTCGAAAA
450 GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAA
*
5747759 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAATTTCACGTGAAGGCTTAAGGGACCATTG
515 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
5747824 TATGAATTTACAAGCCATAAAAATGGCAATGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
580 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * *
5747889 CTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCATAGTG-C-CCGCCCA
645 CTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCGCCCG
* * * * * *
5747952 CCCGCTTGTTTCATCGATTGGCTTAGGCATACGAAGGTCATTCCCAGTCTAAGATCAGATCGGAC
710 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* * * * * * * *
5748017 AGAGGGTTACAGCAACAGGATCGACAACATGCAGAGGGTGACCCGACCGATCCTCGGCTTGCTCA
775 CGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
* * * *
5748082 TCCCGCCCCTCTGGGCAGCTGAGAGCCTGCA
840 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
** * * *
5748113 CGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAATTTAAGATCGGATCGGACCG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* * *
5748178 AGGGTTGCGGTAGCACATGCTGGGCTGGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCA
66 AGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * ** * *
5748243 CCATCGCCGAAACATCGCCAGAGAACCTGATTGGCGGCATTGGGGTTTCGACGATCGGAGGGCCC
131 CCATCACCGAAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCC
* * *
5748308 GAGGGGATGTGCACCCATGATGTGCTATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCGTATC
196 G-GGGGATGTGCA-CCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
5748373 CCTCATCAAACATCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTAGCTGCC
259 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
5748438 AGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
324 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
5748503 CGAGTTTTTAGCTG-AGTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
389 CGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
5748567 GGGGACAAAACTCCTCCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCAT
454 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCAT
* *
5748632 GAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTACG
519 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
5748697 AATTTACAAGCCATAAAAATGGCATTGGC-TCGTAGAAATATGAAGATATGCCTAAACCCACCTA
584 AATTTACAAGCCATAAAAATGGCATTGGCAT-GCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * * *
5748761 CCACCCTATCGATCCATGGCTTGTGCATCCAGTCTCTCTGGTCGGCATAGTGCCCACCTGCCCAC
648 CCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCC-GCCCGC
* *
5748826 CCGCTCGTTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACC
711 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
* * *
5748891 GAGGGTT-CAGCAGCAGGATCG-CTAGCACGCGGAGGGGGACCCGGCCGATCCCCGGCTTGTGCA
776 GAGGGTTGCAGCAGCAGGATCGAC-AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
* * *
5748954 TCCTGCCCCTCTGGCCTGTTGAGCGCCCGCA
840 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
5748985 CGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
*
5749050 AGGGTTACGATAGCACA--------T------T-T--T--T----C----TTC-TC-T-GGGGCA
66 AGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * * * * ****
5749085 CCATCACCGGAGCATCGCCACAGAACTTGATCGACGGCATTACCATTCCGACGATCAGGGGGG-C
131 CCATCACCGAAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC
* * *
5749149 CGGGGCATGCGCA-CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAATGGCCCCCTATCC
195 CGGGGGATGTGCACCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
5749213 GTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
260 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * * * *
5749278 GTAGCCATTAAAAT-TTTAAAAATGGGGAGACTTTTTTCAAATGGTCACAAAATCTTGTACACGT
325 GTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
5749342 CGAGTTTTTAGCTGAAATTTTTTGTGCGTGCCAACAAAAATACAAGGATTACGTCTACCAAGTTT
389 CGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
** * *
5749407 GCTGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACC-CAAAAAGTTTTGAAAATCAT
454 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCAT
* **
5749471 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTGCACGTGAAGGCTTAAGGGACCGGTGTATG
519 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
5749536 AATTTACAAGCCAT-AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCTACCTAC
584 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
5749600 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGTCCGCCCGCC
649 CACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCG-CCGCCCG--
* * ** *
5749665 CGCTCGCTCGTTTCGTCAGTTGGCTTAGGCATA-TGATGTTCATTCCCAGTCTAAGATTGGACCA
710 C-C-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA-GTTCATTCCCAGTCTAAGATCAGACCG
* ** * * * * *
5749729 GACCGAGGATTGTGGTAGCAGGATCGACAGCACACAGAGGGGGACCCGACTGATCCCCAGCTTAC
772 GACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
5749794 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
837 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
*
5749828 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* ** ** * *
5749893 AGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCTTCGAGGCA
66 AGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * * **
5749958 CCATCACCGAAGCATCGCCGGAGAACCTGATCGGCGGCATTGCGGTTCCGGTGATCGGGAGGG-C
131 CCATCACCGAAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCC
* * * *
5750022 TGGGGGCTGCGCA-CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCC
195 CGGGGGATGTGCACCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
5750086 CTCATCAAAGCAT-AAGAACGT-ACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
260 CTCATCAAA-CCTCGAGAAC-TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
5750149 CAGTAGCCATTAAAGTTTCTGAAATGGGGAGACTTTTTTCAAATGTTCACAAAATCTTGTACACT
323 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * *
5750214 TCAATTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AGAAAATACATGGATCAGGTCTACCATA-
388 TCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACA-AAAATACAAGGATCACGTCTACCA-AG
* * * *
5750277 TTTGGTGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCGAAAAT
451 TTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAAT
* * * *
5750342 CATGAAAAATACAAAACGAGTCATCTTGCCATGAAACTTCACGTGTAGGCTTAAGGGGCCATTGT
516 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
5750407 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAATCCCACC
581 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
*
5750472 TACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCTCGTCCGCCC
646 TACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC-CG-CCGCCC
* * * * *
5750537 ACCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTACTAGTCTAAGATCAGACTGGA
709 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
5750602 CCGAGGGTTGCAGCA
774 CCGAGGGTTGCAGCA
5750617 TTTTTCTTCG
Statistics
Matches: 4468, Mismatches: 530, Indels: 286
0.85 0.10 0.05
Matches are distributed among these distances:
838 99 0.02
839 272 0.06
840 87 0.02
841 12 0.00
842 113 0.03
843 152 0.03
844 3 0.00
845 3 0.00
851 1 0.00
853 1 0.00
855 1 0.00
857 2 0.00
858 2 0.00
860 56 0.01
861 289 0.06
862 145 0.03
864 6 0.00
865 32 0.01
866 39 0.01
867 81 0.02
868 195 0.04
869 395 0.09
870 186 0.04
871 180 0.04
872 155 0.03
873 391 0.09
874 99 0.02
875 205 0.05
876 487 0.11
877 11 0.00
878 6 0.00
892 2 0.00
893 99 0.02
896 1 0.00
900 4 0.00
901 206 0.05
902 398 0.09
903 36 0.01
904 15 0.00
906 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (870 bp):
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
AGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
CCATCACCGAAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCC
GGGGGATGTGCACCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
GGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCGCCCGCCCGCT
CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG
TTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGC
CCCTCTGGCCGGCTGAGCGCCCGCA
Found at i:5751434 original size:26 final size:26
Alignment explanation
Indices: 5751398--5751450 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5751388 GTTTACTTAG
5751398 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5751424 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5751450 G
1 G
5751451 ATCAGAATGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5752682 original size:681 final size:675
Alignment explanation
Indices: 5751509--5752862 Score: 2022
Period size: 681 Copynumber: 2.0 Consensus size: 675
5751499 TGCTGGTGCC
* * **
5751509 GCATTTTTTTTCATCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACTGGTGGCATTGGG
1 GCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACAGCAGGCATTGGG
* * * * * *
5751574 TTTTCGATGATCGGGGGTGTGGGGGGGTGTGCGCACATGATTTGCGATGGGTGCTGGTACTTGGC
66 GTTCCGATGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGC
* * *
5751639 CCTTCTATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCGTTTGA
131 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
5751704 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCGAAATGGGGAGACTTTTTCAAATGGTC
196 GATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTTTCGAAATGGGGACACTTTTTCAAATGGTC
*
5751769 ACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAACAAAAATACAAG
261 ACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTGCGCATGCCAACAAAAATACAAG
* * * * *
5751834 GATCAGGTCTACCATATTTGGTGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCAC
326 GATCACGTCTACCATATTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACCAC
* *
5751899 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGTAGG
391 AAAAAGTTTCAAAAATCACGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGG
* *
5751964 CTTAAGGGACCATTGTCATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
456 CTTAAGGGACCATTGTCATGAATTTACAAGCCATAAAAATGGCACTGGCAGGCAGAAATATGAAG
* * *
5752029 ATGTGCCCAATCCCACCTACCACCCTATCGATC-CATGGCTTGCGCATCCCGTCTCTCTGGCCGG
521 ATGTGCCCAAACCCACCTACCACCCTATCGA-CACACGGCTTGCGCATCCCATCTCTCTGGCCGG
* * * * *
5752093 CGTAGTGCTCGTCCGCCCGCCCGGTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTACTA
585 CGTAGTG--C--CCGCCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATACGAAGTTCATTACCA
*
5752158 GTCTAAGATCGGACCAGACCGAGGGTTGCA
646 GTCTAAGATCAGACCAGACCGAGGGTTGCA
*
5752188 GCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCAGCAGG-ATTGG
1 GCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGA-CAGCAGGCATTGG
*
5752252 GGTTCCG-TCGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACT
65 GGTTCCGAT-GATCGGGGGGG-CG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACT
* * *
5752316 TGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAGAGAGCAT
127 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
*
5752381 TTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTATTCAA
192 TTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGT-TTCGAAATGGGGACACTTT-TTCAA
*
5752446 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGCGCATGCCAA-AAAGA
255 ATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTGCGCATGCCAACAAA-A
** *
5752509 ATACAGAGG-TCACGTCTACCA-AGTTTGGGGCCAAAAATGTTTCTGAAAAAATTTTAAAAAATC
319 ATACA-AGGATCACGTCTACCATA-TTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATC
* * * * *
5752572 CCAAACCGCAAAAAGTTTTAAAAATCACGACAATTAGAAAATGAGTCATCTTGCCATGAAACTTC
382 CCAAACCACAAAAAGTTTCAAAAATCACGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
*
5752637 ACGTGAAGGCTTAAGGGACCATTGT-ATGAGTTTACAAGCCATAAAAATGGCACTGGCAGGCAGA
447 ACGTGAAGGCTTAAGGGACCATTGTCATGAATTTACAAGCCATAAAAATGGCACTGGCAGGCAGA
*
5752701 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGACACACGGCTTGCGCATCCCATCTCT
512 AATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGACACACGGCTTGCGCATCCCATCTCT
*
5752766 CTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGAAGTTCATT
577 CTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATACGAAGTTCATT
* ** *
5752831 CCCAGTCTAAGATCAGACTGGATCGAGGGTTG
642 ACCAGTCTAAGATCAGACCAGACCGAGGGTTG
5752863 TGGCAGCAGG
Statistics
Matches: 609, Mismatches: 56, Indels: 22
0.89 0.08 0.03
Matches are distributed among these distances:
677 70 0.11
678 1 0.00
679 70 0.11
680 6 0.01
681 248 0.41
682 167 0.27
683 47 0.08
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (675 bp):
GCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACAGCAGGCATTGGG
GTTCCGATGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTTTCGAAATGGGGACACTTTTTCAAATGGTC
ACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTGCGCATGCCAACAAAAATACAAG
GATCACGTCTACCATATTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACCAC
AAAAAGTTTCAAAAATCACGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTCATGAATTTACAAGCCATAAAAATGGCACTGGCAGGCAGAAATATGAAG
ATGTGCCCAAACCCACCTACCACCCTATCGACACACGGCTTGCGCATCCCATCTCTCTGGCCGGC
GTAGTGCCCGCCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATACGAAGTTCATTACCAGTCTA
AGATCAGACCAGACCGAGGGTTGCA
Found at i:5753004 original size:26 final size:26
Alignment explanation
Indices: 5752974--5753026 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5752964 GTTTACTTAG
*
5752974 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5753000 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5753026 G
1 G
5753027 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5753909 original size:26 final size:26
Alignment explanation
Indices: 5753873--5753925 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5753863 GTTGACTTAG
* *
5753873 GCATATGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5753899 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5753925 G
1 G
5753926 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5754360 original size:899 final size:893
Alignment explanation
Indices: 5752189--5755058 Score: 3511
Period size: 895 Copynumber: 3.2 Consensus size: 893
5752179 AGGGTTGCAG
** * *
5752189 CATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCAGCAGG-ATTGGG
1 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCGGC-GGCATTGGG
* * *
5752253 G-TTCCGTCGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTT
65 GTTTCGGT-GATC--GGGGGTC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTT
* *
5752317 GGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAGAGAGCATT
125 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
5752382 TGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGT-TTGAAATGGGGACACTTTATTCAA
190 TGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTT-AAATGGGGACACTTTTTTCAA
*
5752446 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCGCATGCCAAAAAGAAT
254 ATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG-GCATGCCAAAAA-AAT
* * ** * *
5752511 ACAGAGG-TCACGTCTACCAAGTTTGGGGCCAAAAATGTTTCTGAAAAAATTTTAAAAAATCCCA
317 ACA-AGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAATTTTAAAAAATCCCG
* * * * * *
5752575 AACCGCAAAAAGTTTTAAAAATCACGACAATTAGAAAATGAGTCATCTTGCCATGAAACTTCACG
380 AACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAAAGAGTCGTCTTGCCATGAAACTTCACG
* * * * * *
5752640 TGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATGGCACTGGCAGGCAGAAATA
445 TGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTAGTGGCACGTAGAAATA
*
5752705 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGA-CACACGGCTTGCGCATCCCATCTCTCTG
510 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC-CACGGCTTGCGCATCCCGTCTCTCTG
* *
5752769 GCCGGCGTAGTGCCCG--C-CCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGAAGTTCATT
574 GCCGACGTAGTGCCCGCTCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATT
*
5752831 CCCAGTCTAAGATC-AGA-CTGGATCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGG
639 CCCAGTCTAAGATCGA-ATCTGGCT-GAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGG
* * * *
5752894 ACCC-AGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTTATT
702 ACCCGA-CCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTTATT
* * *
5752958 TCGTGGGTTTACTTAGGCATACGGAGTTCGTTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTC
766 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
** *
5753023 TAAGATTGGACTGGACCGAAGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCT
831 TAAGATCAGACTGGACCGAAGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCT
* * *
5753086 CATTTTTTTTTCATCGGGGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCGGTGGCATTGGG
1 CA-TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGG
*
5753151 GTTTCGATGATCGGGGGTGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCC
65 GTTTCGGTGATCGGGGGT-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCC
* *
5753216 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCGTTTGAG
129 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
5753281 ATTTTACAGGTTTGCTACCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
194 ATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGT
* * * *
5753346 CACGAAATCTTGTATACTTTGAGTTTTTTGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAG
259 CACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TTTTTTTGGCATGCCAA-AAAAATACAAG
* * * * *
5753411 GATCATGTTTACCATGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCTGAACCGT
322 GATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAAAATTTTAAAAAATCCCGAACCGT
* *
5753476 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAAAGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
386 AAAAAGTTTTAAAAATCATGAAAAATAGAAAAAGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
5753541 TTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGTAGTGGCACGTAGAAATATGAAGA
451 TTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTAGTGGCACGTAGAAATATGAAGA
* *
5753606 TGTGCCTAAACCCACCTATCACCCTATCGATCTACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
516 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
* * * * * **
5753671 CAGTGCCCGCTCGCACGCACGCTCGTTTCATCGGTTGGCTTAGACATAC-AGAGCTCATTCCTTG
581 TAGTGCCCGCTCGC-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGA-AGTTCATTCCCAG
* * * *
5753735 TCTATGATCGAATCAGGCTGAGGGTTGTGGTAGCAGGAT-GGATAGCACCCAGAGGGGGACCCGA
644 TCTAAGATCGAATCTGGCTGAGGGTTGTGGCAGCAGGATCGG-TAGCACGCAGAGGGGGACCCGA
* * * *
5753799 CCAATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGTTGAACGCCCGCACGCTCATTTCGTAGG
708 CCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTTATTTCGTGGG
* *
5753864 TTGACTTAGGCATATGGAGTTCATTCCCCGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
773 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
** * *
5753929 AGACTGGACCGTGGGTTACAGCCGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGT
838 AGACTGGACCGAAGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CCT
* * *
5753986 -ATTTTTCTTCGTCGGTGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGGCGGCATCGGGG
1 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGG
* * * *
5754050 TTTCGGTGATTGAGGGGTCGGGGGGTGTG-GACACATGATGTGCAATGGGTGCTGGTACTTGACC
66 TTTCGGTGATCG-GGGGTCGGGGGGTGTGCG-CACATGATGTGCGATGGGTGCTAGTACTTGGCC
* * * *
5754114 CTTATATTGGGCCCTTATCCCTAATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAG
129 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * *
5754179 ATTTTACAGATTTGCTGCCAATAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGT
194 ATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGT
*
5754244 CAC-AAATCTTGTACACTTTGAG-TTTTAGCTGAATTGTTTTGTGGCATGACAAAAAAACTACAA
259 CACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT-TTTT-TGGCATGCCAAAAAAA-TACAA
* * * *
5754307 GGATCATGGTCTAACAAGTTT-GGACCAAACCCCTCCGTCCGAAAAATTTTAAAAAATCCCGAAC
321 GGATCAT-GTCTACCAAGTTTGGGGCCAAA--ACTCCTTCCGAAAAATTTTAAAAAATCCCGAAC
*
5754371 CGT-AAAAGTTTTGAAAATCATGAAAAATAGAAAAAGGAGTCGTCTTGCCATGAAACTTCACGTG
383 CGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAAA-GAGTCGTCTTGCCATGAAACTTCACGTG
* * *
5754435 AAGGCTGTTAAGGGACCA-TGTATGAATTTACAAGCCAT-AAAATGGGCATTGTGCCACATAGAA
447 AAGG-T-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-GG--TAGTGGCACGTAGAA
* *
5754498 ATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTC
507 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
** * * **
5754563 TGGCTAACGTAGTTCCTGCCCGCCAGTCCGTCCGCCCACTCGTTTCGTCGGCTGGCTTAGGTGTA
572 TGGCCGACGTAG----TGCCCG-C--T-CG-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * *
5754628 CGAAGTTCATTCCCAGTCCAAGAAT-GGAT-TGGACCGAGGGTTGTGGCAGCAAGATCGGCAGCA
628 CGAAGTTCATTCCCAGTCTAAG-ATCGAATCTGG-CTGAGGGTTGTGGCAGCAGGATCGGTAGCA
** ** * * * * *
5754691 CGCACTGGGGGACCCGGTCGATCCTCAACTTGCT-CATCCTGCCCCTCTGGCCGGTTGAGTGCCT
691 CGCAGAGGGGGACCCGACCGATCCCCGACTTG-TGCATCCCGCCCCTCTGGCCGGTTGAGCGCCC
**
5754755 GCACGCTTGCTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
755 GCACGCTTATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
5754820 CATTCCCAGTCT---A--AGA-T----C--A-G--ACA--AG---A-------C-C--G-A---G
820 CATTCCCAGTCTAAGATCAGACTGGACCGAAGGTTACAGCAGCACATGCTGGGCTCGGGCATGTG
*
5754851 --GGTGCCA
885 CTGGTGCCT
* * * * *
5754858 CATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGATCGGCGGCATTGGGA
1 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGG
* * * * *
5754923 TTTCAGCGATCGAGGGGGTCGGGGGGGTTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGG
66 TTTCGGTGATC--GGGGGTC-GGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGG
* * *
5754988 CCCTTATATTGGCCCCCTATCCCTTATCGAACCCCGAGAACTCACACCCCCTTAAAGAGCATTTG
127 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
5755053 AGATTT
192 AGATTT
5755059 NNNNNNNNNN
Statistics
Matches: 1723, Mismatches: 196, Indels: 129
0.84 0.10 0.06
Matches are distributed among these distances:
872 1 0.00
873 68 0.04
874 6 0.00
875 8 0.00
876 97 0.06
878 1 0.00
879 1 0.00
881 1 0.00
882 1 0.00
889 1 0.00
892 1 0.00
894 6 0.00
895 446 0.26
896 37 0.02
897 82 0.05
898 362 0.21
899 291 0.17
900 19 0.01
901 82 0.05
903 1 0.00
904 3 0.00
905 6 0.00
906 2 0.00
908 3 0.00
909 190 0.11
910 7 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (893 bp):
CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGG
TTTCGGTGATCGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCT
TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
TTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCA
CAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGGCATGCCAAAAAAATACAAGGATC
ATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAATTTTAAAAAATCCCGAACCGTAAAAA
GTTTTAAAAATCATGAAAAATAGAAAAAGAGTCGTCTTGCCATGAAACTTCACGTGAAGGTTTAA
GGGACCATTGTATGAATTTACAAGCCATAAAAATGGTAGTGGCACGTAGAAATATGAAGATGTGC
CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
CCCGCTCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGA
TCGAATCTGGCTGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCC
CGACTTGTGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTTATTTCGTGGGTTGACTTA
GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA
CCGAAGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCT
Found at i:5754818 original size:26 final size:26
Alignment explanation
Indices: 5754782--5754834 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5754772 GTTGACTTAG
5754782 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5754808 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5754834 G
1 G
5754835 ATCAGACAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5759141 original size:26 final size:26
Alignment explanation
Indices: 5759104--5759156 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5759094 GTTGACTTAG
* *
5759104 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
5759130 GCATACGAAGTTCATTCTCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
5759156 G
1 G
5759157 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:5759345 original size:902 final size:891
Alignment explanation
Indices: 5757312--5772474 Score: 12015
Period size: 880 Copynumber: 17.0 Consensus size: 891
5757302 GTTAACTTTG
* * *
5757312 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
5757377 CTCGGGCATGTGCTGGAGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* ** * ** *
5757442 ACCTAACCGACGATATTGAGGTTCCGACGATCGGGGGGGGCCAAGGGGTGTGTGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATC--GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
5757507 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCATGAATTCAC
193 CGATGGGTGCTGGTA------CC-----TTGGCCCCCTATCCCTCATCAAACCTCA-GAACTCAC
** *
5757572 ACCCTTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
246 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5757637 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTA
311 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * * *
5757702 TGCATGCCAACAAAAATACAAGGATCACGTCTAGTATGTTTTGGGCCAAAACTCCTTCCAAAAAA
376 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
5757767 ATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAATATAGAAAACGAGTCGTCTT
441 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
5757832 GCCATGAAACTTCATGTGAAGGATTAAGGGACCATTGTATGAATTTTGCAAGCCATAAAAATGGC
506 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA-TTTACAAGCCATAAAAATGGC
*
5757897 ATTGGCATGCAGAAATATGAAGATGTGCCTAAAACCACCTACCACCCTATCGATCCACGGCTTGC
570 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * *
5757962 GCATCCCGTCTCTTTGGCCGGCGT-A-GTG--C-TC-GCCCTCTCGCCCGCTC-GTTCGTCAGTT
635 GCATCCCGTCTCTCTGGCCGGCGTAATGCGCCCGCCTGCCCGCCCGCCCGCTCATTTCGTCGGTT
* * * * *
5758020 GGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATTGGACCGGACAGAGGGTTGTGGCAGCAAC
700 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCAG---C
* *
5758085 AGGATC-AGCAGCACACAGAGGGGGACCC-AGTCGATCCCTGG-TTCACGCATCCCGCCCCTCTG
762 AGGATCGA-CAGCACACAGAGGGGGACCCGA-TCGATCCCCGGCTT-GCGCATCCCGCCCCTCTG
** ** * *
5758147 GCCGGCTGAGCGTTCGCACGCTCGTTTTATGGGTTGACTTAGGCATATGGAGTTCATTACCAGTC
824 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
5758212 TAA
889 TAA
* * * *
5758215 GCATAC-AGAGTTTATTCACAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCACATGCAGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* ** * *
5758279 GCTCGGGCATGTGCTGGTGCCGCACTTTTCTTTGTCGGGGCACCATCATCGGAGCATCGCCGAAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCCCGGGGCACCATCGTCGGAGCATCGCCGGAG
* *
5758344 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGGTGTGTGCACATGATGTG
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * *
5758409 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTACCCCTCATCAAACCTCACGAATTCAC
193 CGATGGGTGCTGGTA------CC-----TTGGCCCCCTATCCCTCATCAAACCTCA-GAACTCAC
*
5758474 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATTAAAGTGTCTAAAA
246 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTGAAA
* *
5758539 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCAGAATTTTTTT
310 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** * *
5758604 GTGCATGACAA-AAAAATACAAGGATCGTGTCTACCAAGTTTGTGGCCAAAACTCCTTCTGAAAA
375 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
5758668 AATTTTAAAAAATTCTGAACCATAAAAAGTTTCAAAAATTGTGAAAAATAGAAAATGAGTCGTCT
440 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
5758733 TGCCACGAAATTTCACGTGAAGGCTTAATGGACCATTTTATGAATTTACAAGCCATAAAAATGGC
505 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
5758798 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGC
570 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
5758863 GCATCACGTCTCTCTGGCCGGCATAATGCCCGCCCGCCTGCCCGCCCGCCCACCCACCCGCTCAT
635 GCATCCCGTCTCTCTGGCCGGCGTAATG--CGCCCGCCTGCCCGCCCG--------CCCGCTCAT
* * * * * * *
5758928 TTCGTTGGTCGACTTAGGCATACGAAGTTCATTCCC-GATCCAAGATTGGATCAGACTGAGGGTC
690 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG-TCTAAGATTGGACCAGACTGAGGGTT
* * * * * * *
5758992 ACGGTAGCAAGATCGACAGCACATAGAGAGGGAGCCGATCGATCCCCGACTTGCGCATCCCGCCC
754 GCGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCC
*
5759057 CTCTGGCCGGCTGAGCGCCCGCACGCTGGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
819 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
5759122 CAGTCTAA
884 CAGTCTAA
* * * *
5759130 GCATACGAAGTTCATTCTCAATCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
5759195 CTCAGGCATGTGCTGGTGCTGCATTTTTCTTCCCAAGGCACCATCGCCGGAGCATCACCGGAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * * * *
5759260 CCTGACCGGCGGTATTAGGGTTTCGACGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCG
131 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCG
*
5759325 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
195 ATGGGTGCTGGTA------CC-----TTGGCCCCCTATCCCTCATCAAACC-TCAGAACTCACAC
* *
5759390 CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
248 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
5759455 GGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTATG
313 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
5759520 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAAGTCCTTCCAAAAAAAT
378 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* ** *** *
5759585 TTTAAAAAATCCCAAACCACAAAAAGTTTTGGAAATTGTGAAAAATAGAAAACGAGTCGTCTTGC
443 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
5759650 CATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
508 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
5759715 GGCATGCAGTAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGTTTGCGCA
573 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
** * * * * * *
5759780 TCTTGTCTCTCTGGCCAGCGT-A-GTGCCCGCCCGTCCGTCCGCCCGCTCTTTTCGTCGGTTGGC
638 TCCCGTCTCTCTGGCCGGCGTAATGCGCCCGCCTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGC
* * *
5759843 TTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGA-TCGAGGGTTACGACAGCAGGAT
703 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACT-GAGGGTTGCGGCAGCAGGAT
** * * ** *
5759907 CGACAGCACATGGAGGGGGACCCAATCGATCGCCAACTTGCGCATCCCGCCCCTCTGGTCGGCTG
767 CGACAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
5759972 AGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCTAA
832 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * **
5760032 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAATACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
5760097 CTCAGGCATGTGCTGGTGCTGCATTTTTCTTCACTGGGGCACCATCGCCGGATCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * * ** * * *
5760162 ACCCGATCGATGACGTTGGGATTCCGGGGATCGGAGGGCCGGGGGGGTGTGCACAAATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGC
* *
5760227 GATGGGTGCTAGTACTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACA
194 GATGGGTGCTGGTA------CC-----TTGGCCCCCTATCCCTCATCAAACCT-CAGAACTCACA
*
5760292 CCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
247 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
5760357 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAATGTTTAGCTGAATTTTTTTGT
312 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
5760422 GCAAGCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAATAAA
377 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * ** *
5760487 TTTCAAAAAATCTCGAACCGCAAAAAATTTTGAAAATCGTCAAAAATAGAAAACGAGTCGTCTTG
442 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * **
5760552 CCATGAAACTTCACGTGAAGGCCTAA-AGACCATTGTATGAATTTACAAGCCATAAAAATCCCAT
507 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
5760616 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCCCGACTTGCGC
572 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * * * *
5760681 ATCCCATCTCTTTGGCCGACGTAGTGCCCGCCAGCCCGTCCGCCCGCTCGCTCATTTCGTCAGTT
637 ATCCCGTCTCTCTGGCCGGCGTAATG--CGCCCGCCTGCCCGCCCGCCCGCTCATTTCGTCGGTT
* * * * * *
5760746 GGCTTAGGCATGCAGAGTTCATTCCTAGTCTAAGATTGGACCGGAGTGAGGGTTGCGGTAGCAGG
700 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCAGCAGG
* * * * * * * *
5760811 ATTGGCAGCACGCAGAGGGGGACCCGGTCGGTCCCCGACTTACGCATCCTGCCCCTCTGGCCGGC
765 ATCGACAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
*
5760876 TGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATAC-G-G---------AG--T--
830 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
5760923 ---T-C--A---C--TCCCAGTCTAAGATTAGACCGGACTGAGGGTTACGGTAGGACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
5760977 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTAGGGGCACCATCGTCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CCGGGGCACCATCGTCGGAGCATCGCCGGAGA
5761042 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTGC
5761107 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATCTC-GAACTCAC
194 GATGGGTGCTGGTA------CC-----TTGGCCCCCTATCCCTCATCAAAC--CTCAGAACTCAC
* * *
5761171 ACCGCCTTAAAAAGGATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
246 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
5761236 GTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTGTTTAGCTGAATTTTTTTG
311 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
5761301 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
376 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
5761366 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTCT
441 ATTTTAAAAAATCCCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * * *
5761430 TGCCGTGGAACTTCACGTGAAGGCTTAAGGGACAACTGTATGAATTTACAAGTCATAAAAATGGC
505 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
5761495 GTTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCCGATCCACGGCTTG
570 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT-CGATCCACGGCTTG
* * * *
5761560 CGCATCCCGTCTCTCTAGCTGACGT-A-------G--T----GCCCGCCCGCTCGTTTCGTCGGT
634 CGCATCCCGTCTCTCTGGCCGGCGTAATGCGCCCGCCTGCCCGCCCGCCCGCTCATTTCGTCGGT
* * * * * * * *
5761611 TGGCTTAGGCATATGGAGTTCCTTCACAGTTTAAGATCGGACCGGA-TCGAGGGTTTCGGCAACA
699 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACT-GAGGGTTGCGGCAGCA
* * * ** ** *** ** * * *
5761675 -CAT-G-CTGGGCTCA-AGAATATGCTGGTGCCGTATTTTTCTTCACCGGGGTAC-CATCATCGG
763 GGATCGAC--AGCACACAG---A-GGGGGACCCG-ATCGATC--C-CCGGCTTGCGCATC-CCGC
** * * * ** * * * * * * *
5761735 AGC-AT---CGTCAGAGAACCTG-ACCAGCGGCG-TT-G-GGGTT-TC-GACG-AT-CGGGGGGT
817 CCCTCTGGCCGGCTGAGCGCCCGCA-C-GC-TCGTTTCGTGGGTTGACTTAGGCATAC-GGAGTT
****** *
5761788 C-GGGGGGGTGT--
878 CATTCCCAGTCTAA
* * * * * ** * * * ** *** * ** *
5761799 GCACACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGG-CC--CCCTATCCCTCATC
1 GCATAC--GAAGTTC-AT---TCCCAGT-CTAAG--ATCAGACCGGACCGAGGGT-TGCGGCAGC
* * **** ** * *** * *
5761861 A-ATCCTGGAGAACTC--ACACCCCCTTGAAG-AGCATTTGAGATT-TTATAGGTTTGCTGCCAG
56 ACATGCTGG-G--CTCGGGCATGTGC-TGGTGCCGCATTT----TTCTTCCCGG--GGC-ACCA-
* * ** * * * * *** *** ** ** ** *
5761921 TAGCCATTA-AAGT-GTC-TAAAATGGGGA-C-ACTTTATTCAAATGG-TCAC-AAAATC-TTGT
109 TCGTC-GGAGCA-TCGCCGGAGAA-CCTGACCGACGGCATT---GGGGTTC-CGACGATCGGGGG
* *** * *** *** ** ** ****** **** *
5761978 ACACATCGAGT-T-TTTAGC-TGAT-T-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
167 GC-CGGGGGGTGTGCGCA-CATGATGTGCGATGGGTGC-TG-GTAC-CTTGGCCCCCTATC-CCT
* *** * * * * * * * * ** *
5762038 CTACCAAGTTTTAAAAAATCTCGA--ACCGTATAAGATCGGA-TCG-GA-TCGA-GGGTTATGAC
226 C-ATCAA-ACCTCAGAACTCAC-ACCCCCTTA-AAGA--GCATTTGAGATTTTACAGGTT-TG-C
* * * ** * ** * ***** * *
5762097 AGCACATGCTGGGC--TCGAGCATGTGCTG--GTGCCG-CATTTTTCTTTGCGGGGGCAC--CAT
283 TGC-CA-G-TAGCCATTAAAG--TGT-CTGAAATGGGGACACTTTT-TTCAAATGGTCACAAAAT
* * * **** * ***** * ** * * *
5762155 CGTCGGAGCATCGTCGGAGAACCT-GACCG-ACGGCATTGGGGGT-CCGAC---GAT-CGGGAGG
341 C-TTGTA-CA-CTTC-GAGTTTTTAG-CTGAATTTTTTTGTGCATGCCAACAAAAATAC--AAGG
** * * * **** * *** *
5762213 GCCGAGGGGGGTGTGCGCACATGATGTGGAATGGGTGCTGGTA--CCTGGCC-CTTATATTGGCC
399 ATC-A----CGTCTAC-CA-A-G-T-T----TGGG-GCCAAAACTCCT-TCCGAAAAAATT----
**** * * * * * * * * * * **
5762275 CTCT-ATCCCTCATCAAACCTTGAGAACTCTC---AACCCTTAAAGAGCATTTGAGATTTTAC-A
444 -T-TAAAAAATC-CCGAACCGTAAAAAGTTTCAAAAATCGTGAAA-A--A--T-AGA--AAACGA
* * * * * * * * * *
5762335 G--GTTTGCTGCCA-GTAGC--CA-TTAAAGTGTCTGAAATGGGGA-CACTTTTTTCAAATGGTC
498 GTCGTCT--TGCCATGAAACTTCACGTGAAG-G-CT-TAA--GGGACCA-TTGTAT-GAAT--TT
* *** * * *
5762393 ACAAAATCTTGTACACTTAGAGTTTTTGGCTGATTTTTTTTGTGCATGCGAACAAAAATTCAAGG
552 AC--AA----G--C-CATA-A--AAATGGC--A------TTG-GCATGC--AGAAATA-TGAA-G
* * **** ** *** ** **** * **
5762458 ATCACGTCTACCAAAATTTGGGCC-AAAACTCCT-TCCGAAAAAATG-TTAAAAAAATCCTGAAT
592 AT---G--TGCCTAAA--CCCACCTACCAC-CCTAT-CGATCCACGGCTT--GCGCATCCCGTCT
***** *** ****** ** ** ** ** * *
5762520 CGT-AAAAAGTTTTAAAAAT-CGTGAAAAATAGAAAACGAGTCGTCTTGC-CATGAAACTTCACG
646 C-TCTGGCCGGCGT---AATGCG-CCCGCCT-G--CCCG-CCCG-CCCGCTCAT--TTCGTC-GG
* * * ** * * * * * * **
5762582 TCAAGGCTTAGGGGACCAT-TGTA-TGAATTTACAAGCCATAAAAATGG--C--A-T-TGGCATG
698 T--TGGCTTA--GG--CATACGGAGTTCA-TTCCCAGTC-TAAGATTGGACCAGACTGAGGGTTG
* * ** * ** *** * * ****** * * * *
5762639 CAGAAATATGAAGGTGTGCCTAAACCCGCCTACCACCCTATCGATCCACGGCTTGCGCTTCCCGT
755 CGGCAGCAGGATCGACAG-C-ACA-CAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGC
* * * * **** *
5762704 CTCTCTAGCCGGC-GTAGTGCCCGCCCGC-C----CACCCGTTCA-TT-----T-C---G-TCAG
817 CCCTCTGGCCGGCTG-AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-
** *
5762752 TTGGC--T-TAG
880 TTCCCAGTCTAA
* * *
5762761 GCATAC-AGAGTTCATTCCCAGTCTAAGATCGGA-CGAGACCAAGGGTTGCAGCAGCACATGCTG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCG-GACCGAGGGTTGCGGCAGCACATGCTG
* * * * *
5762824 GGCTCGGGCATGTGCTGCTGCCACATTTTTC-T--C----CACC--GGT-GCAACATCGCCGGAG
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * *
5762879 AAGCTGACCGGCGGCATTGGGGTTCCGATGATTAGGGGGGCCGGGGGGGTGTGCGCACATGATGT
129 AACCTGACCGACGGCATTGGGGTTCCGACGA-TCGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * *
5762944 GAGATGGGTGCTGGTA-CTTGGCCCTTACATTGGCCCCTAATCCCTCATCAAACCTTGAAAACTC
192 GCGATGGGTGCTGGTACCTTGG------C-----CCCCT-ATCCCTCATCAAACC-TCAGAACTC
* * *
5763008 ACACCACCTTAAAGAGCATTTGAGATTTGACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAA
244 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
5763073 ATGGGGACAC-TTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
309 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * **
5763137 TGTGCATGCCAACAAAAATGCAAGGATCATGTCTACCGTGTTTGGGGCCAAAACTCCTTCCGAAA
374 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
5763202 AAATTTTAAAAAATCTCTGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGT
439 AAATTTTAAAAAATC-CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
5763267 TTTGGCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
503 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* ** * * * ** * * *
5763332 GCACTGGCACACAAAAATATGAAGATGAGCCTAAACGCATGTATCGCCCTATCAATCCACGGCTT
568 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
5763397 GCACATCTCGTCTCACTGGCCGGCGTAGTGCCCTATCAATCCATGACTTGCGCATCCCGTCTCTC
633 GCGCATCCCGTCTCTCTGGCCGGC-----G---------T--A--A--TGCG---CCCG---C-C
* * ** *
5763462 TGGCCAGCGTAGTGCCCACCCACCCGCTCGTTTCGTCAATTGGCTTAGGCATACAGAGTTCATTC
671 T-GCC--C-----G----CCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* ** * * * *
5763527 CCAGTCTAAAATCAGACC-GAATCGAGGGTTACGGCAGCAGGATCGATAGCACACAGAAGGGGAC
724 CCAGTCTAAGATTGGACCAGACT-GAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGGGGAC
** * * *
5763591 CCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGTGCCCGCATGCTCGTTTTC
788 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG-TTTC
* * *
5763656 GTGGGTTGACTTAGGGATATGGAGTTCATTCCCAGTCTAC
852 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * *
5763696 GCAAATGCAGTTCATTCCCAGTCTAAGATTGGACCGGAACGAGGGTTCCGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
5763761 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCA---T-----CAT---CGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * *
5763815 ACCTGACCGACGACATTGGGGTTCTGACGATCAGGAGGGCTGGGGGGTGTACGCACATGATGTGT
130 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
5763880 GATGGGTGCTGGTACTTGGACCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGG----T--ACC-----TTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCACA
* *
5763945 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCAATTAAAGTGTCTGAAATG
247 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
** *
5764010 GGGACACTTTTTTCAAATGGTCACGGAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTGT
312 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
5764075 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCAAAAAAA
377 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* ** * * *
5764139 TTTTAAAAAATCTCGAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTCATCTTG
442 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
5764204 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
507 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * ** * *
5764269 TGGCACGTAAAAATATGAAGATGTGCCTAAACCCATGTACCGCCCTATCGATCCACGGCTTACGC
572 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
5764334 ATCCTGTCTCTCTGGCCAGCGTAAT--GCCCGCCTGCCCGCCCGTCCGCTCGTTTCGTCCGTTGC
637 ATCCCGTCTCTCTGGCCGGCGTAATGCGCCCGCCTGCCCGCCCGCCCGCTCATTTCGTCGGTTGG
** * * *
5764397 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAATAGATGGTTGCGACAGCAGGA
702 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACT-GAGGGTTGCGGCAGCAGGA
* * * * * ** * *
5764461 TTGGCAGCACGCAGAGGGGGACCTGATCGATCCCCGACTTATGCATCCCACCCCTTTGGCCGGCT
766 TCGACAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
5764526 GAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTCATTCCTAGTCTAA
831 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
5764587 G-AT-CG--G---------A--C-----T---A---GACCGAGGGTTGCGGCAGCATATG-TAGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCT-GG
* * * * *
5764625 GCTCAGGCATTTGCTGGTGCCGTATCTTTCTTCATCGGGGCACCA---T-----CA---CCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * ** * * *
5764679 AACCTGATCGACGACATTGGGGTTCCGGTGATC----GG--GGGGGATCTGCGCACATGATGTGT
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
5764738 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTA------CC-----TTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCACA
* * *
5764803 CCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAACGTGTCTGAAATG
247 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
5764868 GGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
312 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * *
5764933 GCATGCCAAAAAAAATA-ATAGGATGATGACTACTAAGTTTGGGGCCAAAACTTCTTCCGAAAAA
377 GCATGCCAACAAAAATACA-AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** ** *
5764997 ATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATAGTGAAAAATAGAAAACGAGTCGTCTT
441 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
5765062 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAATGGCA
506 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
5765127 TTGGCATGCAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACGACTTGCG
571 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
5765192 CATCCCATCTCTCCGGTC-G-GT-AT-----AG--T----GCCCGCCCGCTCATTTCATCGGTTG
636 CATCCCGTCTCTCTGGCCGGCGTAATGCGCCCGCCTGCCCGCCCGCCCGCTCATTTCGTCGGTTG
* * * * * * * *
5765243 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACC-GAATCAACGGTTGTGACAGCAAG
701 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACT-GAGGGTTGCGGCAGCAGG
** * * * ** * *
5765307 ATCGACAGCATGCAGAGAGGGACTCGACCGATCCTTGGCTTACGCATCCCGCCCCTCTGGCCGAC
765 ATCGACAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
5765372 TGAGCGCCCGGACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
830 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
5765434 GCATACGGAGTTCATTCCCAGTCTAAGACCGGATCGGACTGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
5765499 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * *
5765564 ACCTGACCGACGGGATTAGGGTTCCGGCAATCGGGCGGGCCAGGGGGTGTGCGCACATGATGTGT
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGTGTGCGCACATGATGTGC
*
5765629 GATGGGTGCTGGTA-CTTGGCCCTTATATTGGTCCCTATCCCTCATCAAACCTCGAGAACTCACT
194 GATGGGTGCTGGTACCTTGG-CC----------CCCTATCCCTCATCAAACCTC-AGAACTCACA
*
5765693 CCCCCTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
247 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
5765758 GGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTCTTTGT
312 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
5765823 GCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
377 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * *
5765887 GTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGACATCTTG
442 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
5765952 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
507 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * *
5766017 TGGCACACAGAAATATGAAAATGTGCC-AAACCCACCTACCACCCTATCGATCCACGGCTTGGGC
572 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
5766081 ATCCCGTCTCTCTGGCTGGC-T-A-------G--TGCCCGCCCGCCCGCTCGTTTCATCGATTGG
637 ATCCCGTCTCTCTGGCCGGCGTAATGCGCCCGCCTGCCCGCCCGCCCGCTCATTTCGTCGGTTGG
* ** * * * *
5766135 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGTAGGAT
702 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCAGCAGGAT
** * * * * *
5766200 CGACAGCACGTAGAGGGGAACCCGGGT-GA-CCCTCGGCTTGCACATCCCGCCCCTCTGGTCGAC
767 CGACAGCACACAGAGGGGGACCC-GATCGATCCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
5766263 TGAGCGTCCGCACACTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
830 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
5766325 G-AT-C--AG---A----C---C---G----GA----A-CGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
5766364 CTTGGGCATGTGCTGGTGCCTCATTTTTCTTCGCCGGTG---CA-C--C--A-C--CGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
5766418 ACCTTGACCGGCGGCATTGGGGTTCCGGCAATCAGGAGGGCCGGGGGGTGTGCGCACATGATGTC
130 ACC-TGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
5766483 CGATGGGTGCTGATACTTGGCCCTTATATTGGCACCCTATCCCTTATCAAACCTTGAGAACTCAC
193 CGATGGGTGCTGGTA------CC-----TTGGCCCCCTATCCCTCATCAAACC-TCAGAACTCAC
* *
5766548 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGGAAT
246 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
5766613 GAGGACACTTTTTTCAAATTGTCAGAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTG
311 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
5766678 TGAATGCCAACAAAAATACAAGGATCACATCAACCAAGTTTTGGGCCAAAACTCCTTCC-AAGAA
376 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA-AA
**
5766742 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCT
440 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
5766807 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCACAAAAATAGC
505 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
5766872 ATTGGCACGTA-AAATATGAAGATGTGCCTAAACCCACTTACAACCCTATTGATCCACGGCTTGC
570 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * *
5766936 ACATCCCGTCTCTCTCGCTGACAT-A-GTGCCCG-CT-CGCGCATCCGCCCGCTC-GTTCTGTCG
635 GCATCCCGTCTCTCTGGCCGGCGTAATGCGCCCGCCTGCCCGC--CCGCCCGCTCATTTC-GTCG
* ** * *
5766996 GTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA-CAGGACCGAGGGTTGCAGCAG
697 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCA-GACTGAGGGTTGCGGCAG
* * * * * *
5767060 TAGGATCGACAGCACGCAGAGGGGGACTCGGTCGATCCCCGGCTTGCACATCTCGCCCCTCTGGC
761 CAGGATCGACAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * **
5767125 TGGCTGAGCACCCGCACGCTCATTTCGTGGCATGACTTAGGCATACGGAGTTCATTCCCAGTCTA
826 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
5767190 A
891 A
*
5767191 GCATAC-AGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCATATGCTGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
5767255 CCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCA---TC---G--T--------
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CCGGGGCACCATCGTCGGAGCATCGCCGGAG
5767304 ---C-G---GACGGCATTGGGGTTCCGACGATTCCGGGGGGCCGGGGGGTGTGCGCACATGATGT
129 AACCTGACCGACGGCATTGGGGTTCCGACGA-T-CGGGGGGCCGGGGGGTGTGCGCACATGATGT
5767362 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTA------CC-----TTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCA
* ** * *
5767427 CACCCCC-TAAAAAGCATTTGAGATTTTACAGGTTTGCTATCAGTGGCCATTAAAGTGTCTAAAA
245 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
5767491 TGGGGACACTTTTTTCAAATGGTAACAAAATCTGGTACACTTGGAGTTTTTAGCTGAATTTTTTT
310 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
5767556 ATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAGCTCCTT-CGAAAA
375 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAA
* * * *
5767620 AAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAAGCATGAAAAATAGAAAACGAGTCGTC
439 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
5767685 TTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATCGTATGAATTTACAAGCCATAAAAATGG
504 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *** *
5767750 CATTGGCAGGTAGAAATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCTGTGGCTTA
569 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * *
5767815 CACATCCCGTCTCTCTGGCCGACGTAGTTC-CCGGCC-GCCCGTCGGCCCGCTCATTTCATCGGT
634 CGCATCCCGTCTCTCTGGCCGGCGTAATGCGCCCGCCTGCCCGCCCGCCCGCTCATTTCGTCGGT
* * ** * * *
5767878 TGGCTTAGGCATACGGAGTTCATTTCCAGTTTAAGATCAGACCAAAATGAAGGTTGCGGCAGCAG
699 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCAGCAG
* * ** *
5767943 GATCGGCAACACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
764 GATCGACAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
*
5768008 CTGAGCGCCCGCACGTTCGTTTCGT--G--G-C-T-----T---GA---C-TT---AG--T--
829 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
5768046 -CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
5768110 CTCGAGCATGTGCTGGTGTCGTATTTTTCTT--C---G---C-T-G-C-G-GCA---CCGTCG--
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * *
5768157 CC-G---GACGACATTGGGGTTCCAACGATCGGGGGGGCCGAGCGGGGTGTACGCACATGATGTG
131 CCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCG-G-GGGGTGTGCGCACATGATGTG
* * *
5768218 CAATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCAC
193 CGATGGGTGCTGGTA------CC-----TTGGCCCCCTATCCCTCATCAAACC-TCAGAACTCAC
* * * * *
5768283 ATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCACTAAAGTGTTTGGAAT
246 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
5768348 GGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
311 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* **
5768413 TGCATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGTTGCCAAAACTCCTTCCGAAAAA
376 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
5768478 ATTTTTAAAAATCCCGAACAGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAATGAGTCGTCTT
441 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
5768543 GCAATGAAACTTCACGTGAAGGCTTAAGGGAACCATTGTATGAATTTACAAGCCATAAAAATGGC
506 GCCATGAAACTTCACGTGAAGGCTTAAGGG-ACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * *
5768608 AGGGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
570 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
5768673 GCATCCCATCTCTCTGGCCGGCGT-A-GTG--C-CC-GCCCGCCTGCCCGCTCGTTTGGTCGGTT
635 GCATCCCGTCTCTCTGGCCGGCGTAATGCGCCCGCCTGCCCGCCCGCCCGCTCATTTCGTCGGTT
* * * * * * *
5768732 GGCTTTGCCGTACGGAGTTCA-TCCATAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAG
700 GGCTTAGGCATACGGAGTTCATTCC-CAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCAGCAG
** * * **
5768796 GATCGGTAGCACACTGAGGGGGACCCGGTCGATCCCCGGCTTGTACATCCCGCCCCTCTGGCCGG
764 GATCGACAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
5768861 TTGAGCGCCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCAATCCCAGTCTAA
829 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
5768924 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTACAGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
5768989 CTCGGGCATGTGC-GAGTGCCGCTTTTTTCTTCGTCAGGGCACCGTCGTCAGAGCATCGTCGGAG
66 CTCGGGCATGTGCTG-GTGCCGCATTTTTCTTC-CCGGGGCACCATCGTCGGAGCATCGCCGGAG
* ** **
5769053 AACCTGATCGGTGGCATTGGGGTTTTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
129 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
5769118 CGATGGGTGCTGGT-CCTTGGGCCTTATATTGGCCCCTTATTCCTCATCAAACCTTGAGAACTCA
193 CGATGGGTGCTGGTACCTT-GG-C---------CCCC-TATCCCTCATCAAACC-TCAGAACTCA
* *
5769182 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAA
245 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
5769247 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
310 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
5769312 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
375 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * ** * * *
5769377 AAGTTTAAAAAATCTCAAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGACATCT
440 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
5769442 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
505 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
5769507 ATTGGCATGCAGAAATATGAAGATGTACCCAAACCCACCTACCACCCTATCGATCCACGGCTTGC
570 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
5769572 GCATCCCGTCTCTCTGGCTGGC-T-A-------G--TGCCCGCCCGCCCGCTCGTTTCATCGGTT
635 GCATCCCGTCTCTCTGGCCGGCGTAATGCGCCCGCCTGCCCGCCCGCCCGCTCATTTCGTCGGTT
* * * * * *
5769626 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGCAGTAGCAGG
700 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCAGCAGG
* * * * *
5769691 ATCGACAGCACATAGAGGGGGACCTGGGT-GA-CCCTCGGCTTACGCATCTCGCCCCTCTGGCCG
765 ATCGACAGCACACAGAGGGGGACC-CGATCGATCCC-CGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * *
5769754 GCTGAGTGTCTGCACACTGGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
828 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
5769818 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCATATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
5769883 CTCGGGCATGTGCTGGTGCCGCATTTTTCTACACCGGGGCTCCATCGTCAGAGCATCGCAGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* ** * * *
5769948 ACCTAACCGGTGGCATTGGGGTTCCGGCGATCGGAGGGGCTGGGGGGTGTGCG---ATG-GGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTGC
* *** *** ** * *
5770009 TGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCACACCCCCATAA
194 -GAT-GGGTGCTGGTACCTTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCACACCCCCTTAA
* * * *
5770074 AGAGCAATTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGCGAACACTT
256 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * * *
5770139 TTTTCAAAAGGTCACAAAATCTTGTACACTTCGATTTTTTGGCTAAATTTTTTGGTGCATGCCAA
321 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
5770204 CAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAAT-CTTTCGAAAAAATTTTAAAAA
386 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * *
5770268 ATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
451 ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * * *
5770333 TTCACGTGAAGGCTTAAGTGA-CACTTGTACGAATTCACAAGCCATAAAAATGGCATTGGCACGT
516 TTCACGTGAAGGCTTAAGGGACCA-TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
5770397 AGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACTGCTTGCGCATCCCG-C
580 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * *
5770461 TTCTCTAGTCGGCGT-A-GAG--C-CC-GCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGT
645 -TCTCTGGCCGGCGTAATGCGCCCGCCTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGC
* * * * *
5770520 ATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGGGGGTT----------G-T-GACAGT
709 ATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGC
* * * * * *
5770573 ACACAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCACCCTTTTGGCCAGCTGAGCGCCC
774 ACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
*
5770638 GCAGGCTCGTTTCGTGGGTTGACTTAGG-AGTACGGAGTTCATTCCCAGTCTAA
839 GCACGCTCGTTTCGTGGGTTGACTTAGGCA-TACGGAGTTCATTCCCAGTCTAA
* * * *
5770691 GCATACGGAGTTCATTCCAAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
5770756 CTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGCTGGGGCACCACCGTCGGAGCATTGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * * *
5770821 ACCTGACCGACGGCATCGGGGTTTCGGCAAACGGAGGGGCCGGGGGGTGTACGCACATGATGTCC
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
5770886 GATGGGAGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTA------CC-----TTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCACA
*
5770951 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTTG-AAT
247 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAAT
* *
5771015 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCAAGTTTTTAGCTGAATTTTTTTG
311 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
5771080 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCAAAAAA
376 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* **
5771145 ATTTTAAAAAATCCCGAACCGTAACAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTT
441 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
5771210 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTCA
506 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
5771275 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACAACCTTATCGATCCACGGCTTGCG
571 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
5771340 CATCCTGTCTCTCTGGCCGGCGT-A-GTGCCCG-CTCGCCCGTCCGCCCGCTCGTTCCATCGGTT
636 CATCCCGTCTCTCTGGCCGGCGTAATGCGCCCGCCT-GCCCGCCCGCCCGCTCATTTCGTCGGTT
* * * ** * *
5771402 CGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG-TCAGGAGGGAGGGTTCCGGTAGCAG
700 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCA-GACTGAGGGTTGCGGCAGCAG
* * * * * *
5771466 GATCGGCAGCACGCAGAGGGGGACTCGGTCGAT-CCCGGCTTGCGCATCTCGCCCCTCTGGCTGG
764 GATCGACAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
*
5771530 CTGAGCGCCCGCACGCTCGTTTCGTGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
829 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
5771593 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCATCATATGTTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
5771658 CTCGGGCATGTGCTGGTGTCGCATTTTCCTTCGCCGGGGCACCA---T-----CAT---------
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
5771706 --C-GA---ACGGCTTTGGGGTTCTGACGATCAGGGGGGCCGGGGGGTGTGCGCCCATGATGTGT
130 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
5771765 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCTATCCCTCTTCAAAGCTCGAGAACTCAC
194 GATGGGTGCTGGTA------CC-----TTGG-CCCCCTATCCCTCATCAAACCTC-AGAACTCAC
* * * *
5771830 ACCCCCCTAAAGAGCATTTGTGATTTTACAGGTTTGCTGCTAGTGGCCATTAAAGTGTCTGAAAT
246 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5771895 GGGGACACTTTTTTCAAATGGTCACAAAATCTGGTACACTTGGAGTTTTTAGCTGAATTTTTTTG
311 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
5771960 TGCATGCCAAAAAAAATACAAGGATCACATCTACCAACTTTGGGGCCAAAACTCCTT-CGAAAAA
376 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAA
* * *
5772024 AATTTTAAAAAATCCTGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCT
440 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
5772089 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGC
505 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
5772154 ATTGGCATGCAGAAATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
570 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
5772219 GCATCCCGTCTCTCTGGCCGGCATAAT--GCCCGACC-GCCCGCCCGCCCACTCATTTCATCGGT
635 GCATCCCGTCTCTCTGGCCGGCGTAATGCGCCCG-CCTGCCCGCCCGCCCGCTCATTTCGTCGGT
* * *
5772281 TGTCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGAATGAGGGTTGCGGTAGCAG
699 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCAGCAG
* * *
5772346 GATC-AGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGTCG
764 GATCGA-CAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * * * *
5772410 GCTGAGCGCCCACGCGCTCGTTTCGTGGCTTGACTTAGTCAGATGGAGTTCATTCCCGGTCTAA
828 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
5772474 G
1 G
5772475 ATCAGACCGG
Statistics
Matches: 11663, Mismatches: 1846, Indels: 1524
0.78 0.12 0.10
Matches are distributed among these distances:
845 2 0.00
846 1 0.00
847 185 0.02
848 3 0.00
849 2 0.00
851 3 0.00
852 4 0.00
853 164 0.01
854 120 0.01
855 150 0.01
856 436 0.04
857 347 0.03
858 235 0.02
859 217 0.02
860 3 0.00
861 1 0.00
862 6 0.00
863 3 0.00
864 12 0.00
865 173 0.01
866 258 0.02
867 18 0.00
868 19 0.00
869 8 0.00
870 7 0.00
871 8 0.00
872 11 0.00
873 322 0.03
874 10 0.00
875 6 0.00
876 10 0.00
877 5 0.00
878 3 0.00
879 478 0.04
880 1508 0.13
881 378 0.03
882 49 0.00
883 2 0.00
884 35 0.00
885 79 0.01
886 198 0.02
887 227 0.02
888 68 0.01
889 229 0.02
890 201 0.02
891 354 0.03
892 230 0.02
893 39 0.00
894 357 0.03
895 24 0.00
896 21 0.00
897 9 0.00
898 21 0.00
899 134 0.01
900 344 0.03
901 120 0.01
902 876 0.08
903 659 0.06
904 10 0.00
905 10 0.00
906 181 0.02
907 10 0.00
908 22 0.00
909 11 0.00
910 21 0.00
911 13 0.00
912 8 0.00
913 109 0.01
914 448 0.04
915 202 0.02
916 58 0.00
917 19 0.00
918 60 0.01
919 14 0.00
920 3 0.00
921 5 0.00
922 10 0.00
923 5 0.00
925 6 0.00
926 10 0.00
927 8 0.00
928 13 0.00
929 7 0.00
930 4 0.00
931 20 0.00
932 4 0.00
933 184 0.02
934 173 0.01
935 217 0.02
936 13 0.00
937 11 0.00
938 14 0.00
939 14 0.00
940 15 0.00
941 7 0.00
942 9 0.00
943 9 0.00
944 10 0.00
945 6 0.00
946 24 0.00
947 26 0.00
948 28 0.00
949 18 0.00
950 23 0.00
951 18 0.00
952 9 0.00
953 6 0.00
954 5 0.00
955 18 0.00
956 12 0.00
959 3 0.00
960 4 0.00
961 4 0.00
962 6 0.00
963 2 0.00
966 2 0.00
968 1 0.00
969 15 0.00
970 9 0.00
971 3 0.00
972 17 0.00
973 13 0.00
974 10 0.00
975 1 0.00
976 4 0.00
977 8 0.00
978 9 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACCTTGGCCCCCTATCCCTCATCAAACCTCAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGGCGTAATGCGCCCGCCTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACACAGA
GGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5763458 original size:49 final size:49
Alignment explanation
Indices: 5763377--5763478 Score: 150
Period size: 49 Copynumber: 2.1 Consensus size: 49
5763367 CGCATGTATC
* * *
5763377 GCCCTATCAATCCACGGCTTGCACATCTCGTCTCACTGGCCGGCGTAGT
1 GCCCTATCAATCCACGACTTGCACATCCCGTCTCACTGGCCAGCGTAGT
* * *
5763426 GCCCTATCAATCCATGACTTGCGCATCCCGTCTCTCTGGCCAGCGTAGT
1 GCCCTATCAATCCACGACTTGCACATCCCGTCTCACTGGCCAGCGTAGT
5763475 GCCC
1 GCCC
5763479 ACCCACCCGC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.16, C:0.38, G:0.22, T:0.25
Consensus pattern (49 bp):
GCCCTATCAATCCACGACTTGCACATCCCGTCTCACTGGCCAGCGTAGT
Found at i:5765438 original size:26 final size:26
Alignment explanation
Indices: 5765408--5765460 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5765398 GTTGACTTAG
*
5765408 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5765434 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5765460 G
1 G
5765461 ACCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5767201 original size:26 final size:26
Alignment explanation
Indices: 5767165--5767217 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5767155 CATGACTTAG
*
5767165 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5767191 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5767217 G
1 G
5767218 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5768934 original size:26 final size:26
Alignment explanation
Indices: 5768898--5768950 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5768888 GTTGACTTAG
5768898 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
*
5768924 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
5768950 G
1 G
5768951 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:5769828 original size:26 final size:26
Alignment explanation
Indices: 5769792--5769844 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5769782 GTTGACTTAG
5769792 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5769818 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5769844 G
1 G
5769845 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5770704 original size:26 final size:26
Alignment explanation
Indices: 5770668--5770717 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
5770658 GACTTAGGAG
*
5770668 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCAAGTCTAAGCA
5770694 TACGGAGTTCATTCCAAGTCTAAG
1 TACGGAGTTCATTCCAAGTCTAAG
5770718 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCAAGTCTAAGCA
Found at i:5771603 original size:26 final size:26
Alignment explanation
Indices: 5771567--5771619 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5771557 CTTGACTTAG
5771567 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5771593 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5771619 G
1 G
5771620 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5772863 original size:161 final size:161
Alignment explanation
Indices: 5772598--5772911 Score: 515
Period size: 161 Copynumber: 2.0 Consensus size: 161
5772588 GGGGGGCCGA
5772598 GGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCC
1 GGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCC
* **
5772663 TTATCAAACCTTGAGAACTCACAGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
66 TCATCAAACCTCAAGAACTCACAGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
5772728 TATCCACTAAAGTGTTTAAAACAGGGAACGG
131 TAGCCACTAAAGTGTCTAAAACAGGGAACGG
* *
5772759 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCACCC-TATCC
1 GGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCTTATCC
5772823 CTCATCAAACCTCAAGAACTCACA-CCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
65 CTCATCAAACCTCAAGAACTCACAGCCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
5772887 AGTAGCCATTAGAGTGTCTAAAACA
129 AGTAGCCACTAAAGTGTCTAAAACA
5772912 AGGACACTTT
Statistics
Matches: 142, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
160 3 0.02
161 136 0.96
162 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.27
Consensus pattern (161 bp):
GGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCC
TCATCAAACCTCAAGAACTCACAGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCACTAAAGTGTCTAAAACAGGGAACGG
Found at i:5773577 original size:159 final size:159
Alignment explanation
Indices: 5773293--5773675 Score: 425
Period size: 159 Copynumber: 2.4 Consensus size: 159
5773283 GTTTTGTCAG
** *
5773293 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACGGGATCAAGGG-T-TACGACAG
1 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTA-G-CAG
* * * * * * * * *
5773356 TAGGATCGATAGCATGCAGAGGGGGACTCAGCCGATCCTCAGCTTGCGCATCTCGCCACTCTGGT
64 CAGGATCGACAGCACGCAGAGGGGGACCCAGCCGATCCACAGCTTGCACATCCCACCACTCTGGC
* * *
5773421 CGACTGAGCGCCCATACGCTCGTTTCATCCA
129 CGACTGAGCACCCACACGCTCATTTCATCCA
* *
5773452 TTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGATCGAGGGTTGTAGCAGCA
1 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTAGCAGCA
* * * * *
5773517 GGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCACTA-CTTTCACATCCCACCCCTCTGGCC
66 GGATCGACAGCACGCAGAGGGGGACCCAGCCGATCCAC-AGCTTGCACATCCCACCACTCTGGCC
* ***
5773581 GACTGAGCACCCGCACGCTCATTTCATGGG
130 GACTGAGCACCCACACGCTCATTTCATCCA
* * *
5773611 TTGAG-TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGA-CTGAGGGTTGTGGCAG
1 TTG-GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGTAGCAG
5773674 CA
64 CA
5773676 CATGCTGGGC
Statistics
Matches: 188, Mismatches: 31, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
158 1 0.01
159 181 0.96
160 4 0.02
161 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (159 bp):
TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTAGCAGCA
GGATCGACAGCACGCAGAGGGGGACCCAGCCGATCCACAGCTTGCACATCCCACCACTCTGGCCG
ACTGAGCACCCACACGCTCATTTCATCCA
Found at i:5774526 original size:26 final size:26
Alignment explanation
Indices: 5774497--5774549 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5774487 GTTGACTTAG
5774497 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5774523 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5774549 G
1 G
5774550 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5775352 original size:26 final size:26
Alignment explanation
Indices: 5775314--5775369 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
5775304 TGGGTTGACT
* *
5775314 TAAGCATATGGAGTTCATTCCCAGTG
1 TAAGCATACGGAGTTCATTCCCAGTC
5775340 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
5775366 TAAG
1 TAAG
5775370 ATCAGACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:5777149 original size:26 final size:26
Alignment explanation
Indices: 5777120--5777172 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5777110 TTTGACTTAG
5777120 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
* *
5777146 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
5777172 G
1 G
5777173 ATCAGATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:5778049 original size:26 final size:26
Alignment explanation
Indices: 5778012--5778064 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5778002 GTTGACTTAG
5778012 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5778038 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5778064 G
1 G
5778065 ATTAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5778942 original size:26 final size:26
Alignment explanation
Indices: 5778902--5778954 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5778892 GTTGACTTAG
5778902 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
* *
5778928 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
5778954 G
1 G
5778955 ATCGGATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:5779582 original size:891 final size:890
Alignment explanation
Indices: 5775759--5780560 Score: 6574
Period size: 892 Copynumber: 5.4 Consensus size: 890
5775749 CTTGTACACT
* * * *
5775759 AGGATCACGTCTACAAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTGTAAAAAATCTCGAACC
1 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAAAATTTTAAAAAATCTCGAACC
* * * * * *
5775824 GCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTGGCGTGAAACTTCGCATGAA
66 GCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAA
* * * * * ** *
5775889 GGCTTAAGAGACAATTGTATGAATTTACAAGACATAAAAATGACATTGGCATGCAGATATATGAA
131 GGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
* * * * *
5775954 GATGTGCCTAATCCCACCTACCACCCTATCAATCCATGGCTTGAGCATCCCGTCTCTCTGGCCGA
196 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * * * *
5776019 CGTCA-TGCCCGCCCGCCCGCCCACCTGCTTGTTTCGTCGGTTGGCTTAGGCATACTGAGTTCAT
261 CGT-AGTGCCCTCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCAT
** ** * ** *
5776083 TCCCAGTCTAAGATCAGACCGAACCAAGGGTT-ACGGTTGCAAGATCGATAGCATGCAGA-GGGG
325 TCCCAGTCTAAGATCAGACCG-ACTGAGGGTTGA-GGCAGCAGGATCGGCAGCACGCAGAGGGGG
* * * * * * * * * *
5776146 AACCTAACTGATCCCCTGGCTT-AAGCATTCCACCCCTCTGGTCGGCTAAGCGCCCGCACTCTCG
388 ACCCGATC-GA-CCCCCGGCTTGCA-CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCG
* * * * * *
5776210 TTTTGTGGGTTGACTTAGGCTTACAGTGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCTAG
450 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAG
* * * *
5776275 TCTAAGATC-GAATCAGACTGAGGGTTGCGGCAGGACATGCTGGGTTCGGGCATGTGCTGGTGTC
515 TCTAAGATCAG-ATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* **
5776339 GCATTTTTCTTCGTCGAGGCACCATCACCGGAGAACCTGACTAGTGGCATTAGGGTTCCGACGAT
579 GCATTTTTCTTCGTCGAGGCACCATCGCCGGAGAACCTGACCGGTGGCATTAGGGTTCCGACGAT
*
5776404 CGGGGAGGCCGGAGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
644 CGGGG-GGCC-GAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
5776469 GGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC-CTTAAAGAGCATTTGAGATTTTACAG
707 GGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAG
* **
5776533 GTTTGCTCCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
772 GTTTGCTGCCAGTAGCCATTAAAGTGTCCAAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * *
5776598 ATGTACACTTCGACTTTTTGGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
837 TTGTACACTTCGATTTTTTAGCTGACTTTTTTTGTGCATGCCAAAAAAAATACA
* * ** *
5776652 AGGATCACATCTACCTAGTTTGGGGCCAAAACT-CATTCTGAAAAAATTTTAAAAAATCCCGAAC
1 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCA-TCCAAAAAAATTTTAAAAAATCTCGAAC
* * * *
5776716 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTGA
65 CGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCCTGCCATGAAACTTCACGTGA
* * ** ** *
5776781 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTAGGGGCATGCATAAATATGA
130 AGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
*
5776846 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCG
195 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * *
5776911 GCGCAGTGCCCTCCCGCCCGTCCGCCCGCTCGTTTCGTCAGTCGGCTTAGGCTTACAGAGTTCAT
260 GCGTAGTGCCCTCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCAT
* * ** * *
5776976 TCCCAGTCTAAGATCAGACCAAACCGAGTATTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGA
325 TCCCAGTCTAAGATCAGACC-GACTGAGGGTTGAGGCAGCAGGATCGGCAGCACGCAGAGGGGGA
* * * * **
5777041 CCCGGTCGACCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGTGCCCGTACGCTTATTTC
389 CCCGATCGACCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTC
* *
5777106 GTGGTTTGACTTAGGCATACGGAGATCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTA
454 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTA
* * *
5777171 AGATCAGATTAGACCGAGGGTTGCGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGCCACATT
519 AGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* ** * * **
5777236 TTTCTTCGTCGAGGCACCATCGCCGGAGAACCTCACCGACGGTATTGGGGTTCCGGTGATCGGGG
584 TTTCTTCGTCGAGGCACCATCGCCGGAGAACCTGACCGGTGGCATTAGGGTTCCGACGATCGGGG
** *
5777301 GAACGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCACCC
649 GGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCC
*
5777366 TATCCCTCATCAAACCTCAAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGC
713 TATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* **
5777431 TGCCAGTAGCCATTAAAGTGTCTAAAACAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
778 TGCCAGTAGCCATTAAAGTGTCCAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
5777496 ACTTCGATTTTTTAGCTGACTTTTTTT-TAGCATGCCAAAAAAAATACA
843 ACTTCGATTTTTTAGCTGACTTTTTTTGT-GCATGCCAAAAAAAATACA
* * * * *
5777544 AGGATCATGTGTACCGAGTTTGGGGCAAAAACCCCATCCAAAAAAATTTTAAAAAATC-CGGAAC
1 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAAAATTTTAAAAAATCTC-GAAC
* * ** * * *
5777608 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATAAGTTGGCCTTCCATGAAACTTCACGTGA
65 CGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCCTGCCATGAAACTTCACGTGA
*
5777673 AGGCTTAAGGGACCATTGTATGAATTTAGAGGCCATAAAAATGGCATTGGCACACAGAAATATGA
130 AGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
5777738 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
195 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * **
5777803 ACGTAGTGCCCGCCCGTCCGCCCGCCCGCTCGTTTCGTCCTTTGGCTTAGGCATACGGAGTTCAT
260 GCGTAGTGCCCTCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCAT
** * * **
5777868 TCCCAGTCTAAGATTGGACCGAGCTGAGGGTTGCA-ACAGCAAGATCAACAGCACGCAGAGGGGG
325 TCCCAGTCTAAGATCAGACCGA-CTGAGGGTTG-AGGCAGCAGGATCGGCAGCACGCAGAGGGGG
* * * *
5777932 ACTCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACACTCGTTT
388 ACCCGATCGACCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTT
** * *
5777997 TATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
453 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCT
* * * * * *
5778062 AAGATTAGATCGGATCGAGGGTTGCGACAGCACATGCTGGGTTCGGGCATGTGCTGGTGCTGCAT
518 AAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* *
5778127 TTTT-TTCGTCGAGGCACCATTGCCGGAGAACCTGACCGGTGGCATTAGGGTTTCGACGATCGGG
583 TTTTCTTCGTCGAGGCACCATCGCCGGAGAACCTGACCGGTGGCATTAGGGTTCCGACGATCGGG
* * ** * *
5778191 GGG-GGCAGGGGGTGTGCACACATGATGTGCGATGGGTGCTCATACTTGACCCTTATATTAGCCC
648 GGGCCG-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GGCC
*
5778255 CCTATCCCTCATCAAACCTCGAGAACTCACACCCATTTAAAGAGCATTTGAGATTTTACAGGTTT
711 CCTATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
5778320 GCTGCCAGTAGCCATTAAAGTGTCTCAAAA-GGGGACTCTTTTTTCAAATGGTCACAAAATCTGG
776 GCTGCCAGTAGCCATTAAAGTGTC-CAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
5778384 TACACTTTGATTTTTTAGCTGACTTTTTTTGTACATGCCAAAAAAAATACA
840 TACACTTCGATTTTTTAGCTGACTTTTTTTGTGCATGCCAAAAAAAATACA
* * * * *
5778435 AGGATCACGTGTACCAAGTTTGGGGCCAAAACCCCATCCAAGAAAATTTT-AAAATTCCCGAACC
1 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAAAATTTTAAAAAATCTCGAACC
* * *
5778499 GTAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCCTGCCATGAAACTTCACGTGAA
66 GCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAA
*
5778564 GGCTTAAGGGACCATTGTATGAATTTAGAGGCCATAAAAATGGCATTGGCACACAGAAATATGAA
131 GGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
5778629 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
196 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * *
5778694 CGTAGTGCCCTCCCGCCCGTCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCTTGCAGAGTTCATT
261 CGTAGTGCCCTCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATT
* * * * *
5778759 CCCAATATAAGATCAGACCAGACTGAGTGTTGAGGCAGTAGGATCGGCAGCACACAGAGGGGGAC
326 CCCAGTCTAAGATCAGACC-GACTGAGGGTTGAGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
* * * * *
5778824 CCGGTCGACCCCCGGCTTGCACATCCCGCCCCTCTGGTCGGCTGAGTGCCCGCACGCTCATTTCG
390 CCGATCGACCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCG
*
5778889 TGGGTTGACTTAGGCATACGGAGATCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAA
455 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAA
* * *
5778954 GATCGGATTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTT
520 GATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * *
5779019 TTCTTCGCCGAGGCACCATCGCCGGAGAACCTCACCGGTGGCATTGGGGTTCCGACGATCGGGGG
585 TTCTTCGTCGAGGCACCATCGCCGGAGAACCTGACCGGTGGCATTAGGGTTCCGACGATCGGGGG
* *
5779084 GACCGAGTGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCT
650 G-CCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCT
* *
5779149 ATCCCTCATCAAACCTCAAGAACTCACACCCACTTAAAAAGCATTTGAGATTTTACAGGTTTGCT
714 ATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
5779214 GCCAGTAGCCATTAAAGTGTCCAAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
779 GCCAGTAGCCATTAAAGTGTCCAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
5779279 CTTCGATTTTTTAGCTGACTTTTTTTGTGCATG-CAAAAAAAATACA
844 CTTCGATTTTTTAGCTGACTTTTTTTGTGCATGCCAAAAAAAATACA
*
5779325 AGGATCACGTGTACCAAGTTTGGGGCCAAAACTCCATCCAAAAAAATTTTAAAAAATCTCGAACC
1 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAAAATTTTAAAAAATCTCGAACC
* ** * *
5779390 GCAAAAAATTTTGAAAATCGTGAAAAATAAAAAATGAGTCGCCCTGCCATGAAACTTCACGTGAA
66 GCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAA
* *
5779455 GGCTTAAGGGACCATTGTATGAATTTAGAGGCCATAAGAATGGCATTGGCACACAGAAATATGAA
131 GGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
*
5779520 GATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
196 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
*
5779585 CGTAGTG----CCCGCCCGCCCGCCCGCTCGTTTCGTCCGTTGGCTTAGGCATACGGAGTTCATT
261 CGTAGTGCCCTCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATT
** * * * * * *
5779646 CCCAGTCTAAGATTGGACCGAGCTAAGGGTTGTGACAGCAGGATTGGCAACATGCAGAGGGGGAC
326 CCCAGTCTAAGATCAGACCGA-CTGAGGGTTGAGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
* * * *
5779711 TCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACACTCGTTTCG
390 CCGATCGACCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCG
* *
5779776 TGGGTTGACTTAGGCATAC-AAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
455 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAA
* * * *
5779840 GATTAGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTA
520 GATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT-
** ** *
5779905 TTT-TTCGTCGAGGCACCATCATCGGAGAACCTGACCGACGG-ATTAGGGTTCCGGCGATCGAGG
584 TTTCTTCGTCGAGGCACCATCGCCGGAGAACCTGACCGGTGGCATTAGGGTTCCGACGATCG-GG
* * ** *
5779968 TGGCC-AGGGGGGTGTGCACACATGATGTGCGATGGGTGCTCATACTTGACCCTTATATTGGCCC
648 GGGCCGA-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CC
*
5780032 CCTATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTATAGGTTT
711 CCTATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTT
*
5780097 GCTGCCAATAGCCATTAAAGTGTCTC-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
776 GCTGCCAGTAGCCATTAAAGTGTC-CAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * * * *
5780161 TACACTTGGAGTTTTTAGCTGAATTTCTTTGTGCATCCCAACAAAAATACA
840 TACACTTCGATTTTTTAGCTGACTTTTTTTGTGCATGCCAAAAAAAATACA
* * * * *
5780212 AAGATCACGTCTACCAAGTTTGGGGCTAAAA-TGCCTTCCAAAAAATTTTTAAAAAATCTTGAAC
1 AGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCATCCAAAAAAATTTTAAAAAATCTCGAAC
** ** * *
5780276 AACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
65 CGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCCTGCCATGAAACTTCACGTGA
* * **
5780341 AGGCTTAAGGGACCATTGTATCAATTTAGAAGCCATAAAAATGGCATCGGCATGCAGAAATATGA
130 AGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
* * * * * *
5780406 ATACGTGCCTAAACCCACCTACCACCCTATCAACCCACAGCTTGCGCATCCCATCTCTCTGGCCG
195 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * *
5780471 GCGT--TG---T---GTCCGCCCGCCCGCTTGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCAT
260 GCGTAGTGCCCTCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCAT
* * *
5780528 TCCCAATCTAAGATCGGACTGGACTGAGGGTTG
325 TCCCAGTCTAAGATCAGAC-CGACTGAGGGTTG
5780561 TCGCAGCACA
Statistics
Matches: 3483, Mismatches: 390, Indels: 82
0.88 0.10 0.02
Matches are distributed among these distances:
883 72 0.02
884 3 0.00
885 70 0.02
886 293 0.08
887 424 0.12
889 1 0.00
890 601 0.17
891 773 0.22
892 908 0.26
893 330 0.09
894 8 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (890 bp):
AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAAAATTTTAAAAAATCTCGAACC
GCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
CGTAGTGCCCTCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCGACTGAGGGTTGAGGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
CGATCGACCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCGT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAG
ATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
TCTTCGTCGAGGCACCATCGCCGGAGAACCTGACCGGTGGCATTAGGGTTCCGACGATCGGGGGG
CCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCCAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGATTTTTTAGCTGACTTTTTTTGTGCATGCCAAAAAAAATACA
Found at i:5782228 original size:26 final size:26
Alignment explanation
Indices: 5782192--5782244 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5782182 GTTGACTTGG
5782192 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5782218 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5782244 G
1 G
5782245 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5783130 original size:26 final size:26
Alignment explanation
Indices: 5783094--5783146 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5783084 GTTGACTTAG
5783094 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5783120 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5783146 G
1 G
5783147 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5783239 original size:902 final size:896
Alignment explanation
Indices: 5781375--5783850 Score: 3395
Period size: 902 Copynumber: 2.8 Consensus size: 896
5781365 TTCTTCGCTG
* *
5781375 GGCTCGGGCAAGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCTCCGGAGCATCACCGGA
1 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATC-GGGCACCAT-TCCGGAGCATCACCGGA
* *
5781440 GAAACTGACCGACGGCATTCGGGTTCCGACGATCGAGGGGGCTAGGGGTGGGGTGTGCGCACATG
64 GAACCTGACCGACGACATT-GGGTTCCGACGATCG-GGGGGC-A---G-GGGGTGTGCGCACATG
* * *
5781505 ATGTACGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAA
122 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
5781570 CTCACACCCCCTTAAAGAGCATTTGAGATTTTCCAGGTTTGCTGCCAGTAGCCTTTAAAGTATTT
187 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCT
* *
5781635 GAAATGGGGACACTTTTTTCAGATGGTCACAAAATCTTGTACACTTCAAGATTTTAGCTGAATTT
252 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTT
5781700 TTTTGGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTTCGA
317 TTTTGGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTTCGA
*
5781765 AAAAATTTTAAAAAATTTCGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAAAAACTAAGTCG
382 AAAAATTTTAAAAAATTTCGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAAAAAC-GAGTCG
*
5781830 TCTTGCCATGAAACTTTACGTGAAGGCTTAAGCGATCATTGTATGAATTTACAAGCCATAAAAAT
446 TCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAAT
* *
5781895 GGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACT
511 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
** *
5781960 TGCGTTTCCCGCCTCTCTGGCTCGTGTAGTGCCCACCTGCCCACCCGCCCGCTCATTTCATTGGT
576 TGCGAATCCCGCCTCTCTGGCTCGCGTAGTGCCCACCTGCCCACCCGCCCGCTCATTTCATTGGT
* ** * * *
5782025 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTTGATCAGACCGAGGGTTGTGGCAGCAG
641 TGGCTCAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGCTTGTGGCAGCAA
* * *
5782090 GATCGATAGCACGTAGAGGGCGACCCCACCAATCCCCGGCTTGCGCATCCCACCCCTCTGCCCGA
706 GATCGACAGCACGCAGAGGGCGACCCCACCAATCCCCGGCTTGCACATCCCACCCCTCTGCCCGA
* * *
5782155 CTAAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTGGGCATACAGAGTTCATTCCCAGTCTAAGC
771 CTAAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
* *
5782220 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTG
836 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGATA
*
5782281 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCCCCGGAGCATCACCGGA
1 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCG-GGCACCAT-TCCGGAGCATCACCGGA
5782346 GAACCTGACCGACGACATTGAGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGT
64 GAACCTGACCGACGACATTG-GGTTCCGACGATC-GGGGGG-CAGGGGGTGTGCGCACATGATGT
** * * * *
5782411 GCGAAAGGTGCTGGTACCTAGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCA
126 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
5782476 CACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAA
191 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAA
* * *
5782541 TGGGGACAGTGTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTTAATTTTTTT
256 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
*
5782606 GGCATGCCAACAAAAATACAAGGATCGCGTCTACCAAGTTTTGGGCCAAAACTCCTTTCGAAAAA
321 GGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTTCGAAAAA
*
5782671 ATTTTAAAAAATTTCGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAAAAATCGAGTCATCTT
386 ATTTTAAAAAATTTCGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAAAAA-CGAGTCGTCTT
*
5782736 GCCATGAAACTTTACGTGAAAGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCA
450 GCCATGAAACTTTACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCA
5782801 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
515 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** * * * **
5782866 AATCCCGTCTCTCTGGC-CGGCGTAGTGCGC-TTTCGCCCGCCCGCCTGCTCGTTTTGTTGGTTG
580 AATCCCGCCTCTCTGGCTC-GCGTAGTGCCCACCT-GCCCACCCGCCCGCTCATTTCATTGGTTG
* * *
5782929 GGTCAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGCTTGTGGCAGTAAGA
643 GCTCAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGCTTGTGGCAGCAAGA
* * * * *** * ** * * * ** * *
5782994 TCGGCATCACGCAGAGGGGGTCCCGGTCGATCCTTGGTTTGCATATCTCGTCCCTCTGGCCGATT
708 TCGACAGCACGCAGAGGGCGACCCCACCAATCCCCGGCTTGCACATCCCACCCCTCTGCCCGACT
* ** * * *
5783059 GAGCACTTGTATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
773 AAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAT
*
5783124 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCACATGATA
838 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGATA
* * * * **
5783183 GGCTCGGGCATGTGTTGGTGCTGCGTTTTTCTTCATCAGGGCACCATTGTCGGAGCATCGTCGGA
1 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATC-GGGCACCATT-CCGGAGCATCACCGGA
* * *
5783248 GAACCTGACCGACGATATTGGGGTTCCGGCGATC----GG--GGGGGTGTGCGCACATGATGTGT
64 GAACCTGACCGACGACATT-GGGTTCCGACGATCGGGGGGCAGGGGGTGTGCGCACATGATGTGC
*
5783307 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATA
128 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
5783372 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
193 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAATG
* * *
5783437 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACGTCGAGTTTTTAGCTGAATTTTTTTAT
258 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT-G
*
5783502 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-CC-TTCTGAAAAA
322 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTTC-GAAAAA
* * * ** * * *
5783565 ATTTTAAAAAA-TCCGAACCGCAAAATGTTTTGAAAATTGTGAAAAATGGAAAACGAGTCGTTTT
386 ATTTTAAAAAATTTCGAACCGAAAAAAGTTTCAAAAATCGTGAAAAAT-AAAAACGAGTCGTCTT
* * * *
5783629 GTCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAA-TTACAAGACCATAAAAATGGC
450 GCCATGAAACTTTACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAG-CCATAAAAATGGC
*** * *
5783693 A-TGGCTGGCAG-AATATGAAGATGTGCCTAAACCCA-CAACCAACCTAT-GATCCACGGCTTGC
514 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
5783754 G-AT-CCACCTCTTTGG--CGCGTAGTGTCGCCCCCTGCTTCA--CG-CCGCTCTTTTC-TTCGG
579 GAATCCCGCCTCTCTGGCTCGCGTAGTG-C-CCACCTGC-CCACCCGCCCGCTCATTTCATT-GG
*
5783811 TT-GCTTAGGC-TACGGAGTTCATTCCCAGTGC-AAGATCGGA
640 TTGGCTCAGGCATACGGAGTTCATTCCCAGT-CTAAGATCGGA
5783851 TCGAACTGAC
Statistics
Matches: 1407, Mismatches: 143, Indels: 63
0.87 0.09 0.04
Matches are distributed among these distances:
883 28 0.02
884 9 0.01
885 20 0.01
886 4 0.00
887 12 0.01
888 4 0.00
889 15 0.01
890 10 0.01
891 24 0.02
892 14 0.01
893 94 0.07
894 223 0.16
895 49 0.03
897 2 0.00
901 2 0.00
902 793 0.56
903 4 0.00
905 2 0.00
906 96 0.07
907 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (896 bp):
GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGCACCATTCCGGAGCATCACCGGAGA
ACCTGACCGACGACATTGGGTTCCGACGATCGGGGGGCAGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTTCGAAAAAATTTT
AAAAAATTTCGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAAAAACGAGTCGTCTTGCCATG
AAACTTTACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGAATCCC
GCCTCTCTGGCTCGCGTAGTGCCCACCTGCCCACCCGCCCGCTCATTTCATTGGTTGGCTCAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGCTTGTGGCAGCAAGATCGACAGC
ACGCAGAGGGCGACCCCACCAATCCCCGGCTTGCACATCCCACCCCTCTGCCCGACTAAGCACCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGATA
Found at i:5786469 original size:26 final size:26
Alignment explanation
Indices: 5786433--5786485 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5786423 GTTGACTTAG
5786433 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
* * *
5786459 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
5786485 G
1 G
5786486 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:5788953 original size:26 final size:26
Alignment explanation
Indices: 5788916--5788968 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5788906 GTTGACTTAG
5788916 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* * *
5788942 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
5788968 G
1 G
5788969 ATCCTCGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:5790716 original size:718 final size:714
Alignment explanation
Indices: 5789047--5791764 Score: 3957
Period size: 718 Copynumber: 3.8 Consensus size: 714
5789037 GTCGGGGCAC
* * * * * * *
5789047 CATCGTCAAAGAACCTGACCGGCGGTAATGGGGTTCCGACAATCGAGGGGGTCGGGGGCTGGGCG
1 CATCGTCGAAGAACCTGACCGACGGCAATGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCG
*
5789112 CACATGATGTCCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
66 CACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
5789177 CGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-ACAGTAGCCATTAAA
131 CGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * * * * *
5789241 GTATCTGAAATAGGGACATTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCT
196 GTGTCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * * * **
5789306 GATTTTTTTTGTGCTTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGAAAAACGC
261 GAATTCTTTCGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTAAAAAATC
* *
5789371 CTTCCAAAAAAATTTTAAAAAAT-TCTCAACTGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAA
326 CTTCCAAAAAAATTTTAAAAAATCT-TGAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAA
* *
5789435 ACGAGTCGTGTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
390 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
5789500 ATAAAAATAGCATTGGCATGAGGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGAT
455 ATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
*** * ** *
5789565 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTATAGTGCTCGCCCG-CCCGCTTGCCCGTTTTG
520 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGCAGTGCCCGCCCGCCCCGCCCGCTCGTTTTG
* * *** *
5789629 TCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGAAATAGATCGAGCGTTGCGGC
585 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGC
* * * *
5789694 AGCACATGCTGGGTTTGGGCATGTGCTGGTGCAACATTTTTCTTCACC-AGGGCACCATCGTCAG
650 AGCACATGCTGGGCTCGGGCATGTGCTGG-GCCACATTTTTCTTCACCGA-GGCACCATCGTCGG
*
5789758 TG
713 AG
* * * * *
5789760 CATCGCCGGAGAACCTGACCGGCGGCAATGGGGTTCCGACGATCGAGGGGGCTGGGGGGTGTACG
1 CATCGTCGAAGAACCTGACCGACGGCAATGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCG
5789825 CACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
66 CACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
5789890 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAA
131 CGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
5789955 GTGTCTGAAATGGGGACACTTTAT-TCAAATGGTCACGAAATCTTGTTCACGTCGAGTTTTTAGC
196 GTGTCTGAAATGGGGACACTTT-TCTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * * ** *
5790019 TGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAATTTTGGGGCCAAAACT
260 TGAATTCTTTCGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTAAAAAAT
* * * *
5790084 CCTTTCGAAAGAAA-TTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
325 CC-TTCCAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAA
*
5790148 AACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
389 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
5790213 CATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
454 CATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
5790278 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGCAGTGCCCGCCCGTCTTCCCGCCCGCTCGT
519 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGCAGTGCCCGCCCG-C--CCCGCCCGCTCGT
* * *
5790343 TTTGTCGGTTGGCTTAGGTATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
581 TTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTG
* * *
5790408 CAGCAGCACATGCTGGGCTCGGGCAAGTGCTAGGGCCACATTTCTCTTCACCGAGGCACCATCGT
646 CGGCAGCACATGCTGGGCTCGGGCATGTGCT-GGGCCACATTTTTCTTCACCGAGGCACCATCGT
5790473 CGGAG
710 CGGAG
* * * * *
5790478 CATCGTCGAAGAACCTGACCGACCGCATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGTGTGCA
1 CATCGTCGAAGAACCTGACCGACGGCAATGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGC-
*
5790543 G-ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
65 GCACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
5790607 TTGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
130 TCGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
** *
5790672 AGTGTCTGAAATGGGGATGCTTTTCTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGC
195 AGTGTCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
*
5790737 TGAATTCTTTCGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAAAT
260 TGAATTCTTTCGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTAAAAAAT
* * * *
5790802 CCTTTCGAAAAAATTTTGAAAAATTTTGAACCGTAAAAAGTTTCCAAAATCGTGAAAAATTA-AA
325 CCTTCCAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCCAAAATCGTGAAAAA-TAGAA
*
5790866 AACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
389 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * * * *
5790931 CATAAAAATGGCATTGGCAGGTAGAAATAGGAATATGTGCCTAAATCCACCTACCACCCTATCGA
454 CATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
*
5790996 TCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGCAGTGCCCGCCC-CCCCGCCCGTCCGCTCG
519 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGCAGTGCCCGCCCGCCCCG--C--CCGCTCG
* * *
5791060 TTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAATCGAGGGTT
580 TTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTT
** * * *
5791125 GCGGCAGCACATGCTGGGCTCAAGCATGTGCTGGGGCCATATTTTTCTTCACTGGGGCACCATCG
645 GCGGCAGCACATGCTGGGCTCGGGCATGTGCT-GGGCCACATTTTTCTTCACCGAGGCACCATCG
5791190 TCGGAG
709 TCGGAG
*
5791196 CATCGTCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCTG-GGGGGCCGGGGGGTGTGC
1 CATCGTCGAAGAACCTGACCGACGGCAATGGGGTTCCGACGATC-GAGGGGGCCGGGGGGTGTGC
* * * *
5791260 GCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCTCTCATCAAACC
65 GCACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
5791325 TTGAGACCTCACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
130 TCGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
5791390 AGTGTCTGAAATGGGGACACTTTTCTTAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGC
195 AGTGTCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
5791455 TGAATTCTTTCGTACATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGTAAAAAAT
260 TGAATTCTTTCGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTAAAAAAT
** ** *
5791520 CCTTCCAAAAAAATTTT-AAGCATCGTTGAACCACAAAAAGTTTCGAAAATCGTGAAAAATAGAA
325 CCTTCCAAAAAAATTTTAAAAAATC-TTGAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAA
* * * *
5791584 AATGATTCGTCTTGCCATGAAACTTCATGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGC
389 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * * * *
5791649 TATAAAAATGGTAGTGGCATGCAA-AAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCA
454 CATAAAAATGGCATTGGCATG-AAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
5791713 ATCCACGGCTTGCGCATCCCCTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCC
518 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGCAGTGCCCGCCCGCCC
5791765 GTTTCGTCGG
Statistics
Matches: 1820, Mismatches: 161, Indels: 42
0.90 0.08 0.02
Matches are distributed among these distances:
713 166 0.09
714 348 0.19
715 11 0.01
716 2 0.00
717 15 0.01
718 1267 0.70
719 11 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (714 bp):
CATCGTCGAAGAACCTGACCGACGGCAATGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCG
CACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTCTTTCGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTAAAAAATC
CTTCCAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGCAGTGCCCGCCCGCCCCGCCCGCTCGTTTTGT
CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCA
GCACATGCTGGGCTCGGGCATGTGCTGGGCCACATTTTTCTTCACCGAGGCACCATCGTCGGAG
Found at i:5792187 original size:26 final size:26
Alignment explanation
Indices: 5792151--5792203 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5792141 GTTGACTTAG
5792151 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5792177 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5792203 G
1 G
5792204 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5793833 original size:711 final size:707
Alignment explanation
Indices: 5792177--5794352 Score: 3180
Period size: 711 Copynumber: 3.0 Consensus size: 707
5792167 CCCAGTCTAA
* * * *
5792177 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGATGGTTACGGTAGCACATCCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGTAGCACATGCTAGG
* *
5792242 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCATCGAGGCACCATCGTCGGAGCATC-ATCGGAG
66 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCATAG-GGCACCATCGTC-GAGCATCGCT-GGAG
* * *
5792306 AACCTGACCGGCGGCATTAGCGTTCCGACGATTGAGGGGGCCGGGGGTGTGTG-CACATGATGTG
128 AACCTGACCGGCGGCATTAGGGTTCCGGCGATCGAGGGGGCCGGGGG-GTGTGCCACATGATGTG
5792370 AGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCAC
192 AGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCAC
*
5792435 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
5792500 AGGGACACTTTATTCAAATGGTCACAAAATCCTGTTCACGTCGAGTTTTTAGCTGATTTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTG
* **
5792565 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAATGA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAA
* *
5792630 AATTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
451 AATTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
5792695 GCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
5792760 TTGGCACGAAGAAATTTGAAGATTTACCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCG
581 TTGGCA-GAAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** *
5792825 CATCCGGTCTCTCTGGCCGGCACAGTGCCCGTCCGCCCGTCTGCTCGCTCGTTTCGTCGGTTGGC
645 CATCCCGTCTCTCTGGCCGGCGTAGTG-CCGT-CACCCG-C--C-CGCTCGTTTCGTCGGTTGGC
5792890 TTAG
704 TTAG
* * * *
5792894 GCATACGGAGTTCATTCCCAGTCTAAGATCGAAAC-AGATCGAGGGTTACGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCG-GACTGGACCGAGGGTTACGGTAGCACATGCTAG
** * *
5792958 GCTTGGGCATGTGCTGGTGCCACCCTTTTCTTCATTGGGGCACCATCGTCGAAGCATCGCCGGAG
65 GCTTGGGCATGTGCTGGTGCCACATTTTTCTTCA-TAGGGCACCATCGTCG-AGCATCGCTGGAG
*
5793023 AACCTGACCGACGGCATTAGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTG
128 AACCTGACCGGCGGCATTAGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGC-CACATGATGTG
* * * * *
5793088 CGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCTTTCATCAAACCTCAAAAACTCAC
192 AGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCAC
5793153 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5793218 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAATTTTTAGCTGATTTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTG
* * * *
5793283 TGCATGCCAAAAAAAATACAAGGATCACGTCTACAAAGTTTGAGGCCAAAAATCCTTCCAAAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
*
5793348 ATTTAAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGCCGTCT
452 ATTT--AAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
5793413 TGCCATGAAACTTCACGGGAAGGCTTAAGGGACCACTGTACGAATTTACAAGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
5793478 ATTGTG-ATGAAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
580 ATTG-GCA-GAAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
*
5793542 CGCATCCCGTCTCTCTGGCCGACGTAGTG-C-TCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
643 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGTCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* *
5793605 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGTAGCACATGCTAGG
* * ** * **
5793670 CTCGTGCATGTGCTGGTGCTGCATTTTTCTTCGCTAGGGCACCATCACCAGAGCATCGCTGGAGA
66 CTTGGGCATGTGCTGGTGCCACATTTTTCTTC-ATAGGGCACCATCGTC-GAGCATCGCTGGAGA
* * * * * *
5793735 ACCTGATCGGCAGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGT
129 ACCTGACCGGCGGCATTAGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGC-CACATGATGTGA
*
5793800 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACA
* * * * *
5793865 GCCTCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTTAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
5793930 GGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGT
* * *
5793995 GCACGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAG
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* *
5794060 TTGTAAAAAAT-CTCGAACCGTAAAAACTTAT-AAAAATCGTGAAAAATAAAAAACGAGTCGTCT
453 TT-TAAAAAATCCT-GAACCGTAAAAAGTT-TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
5794123 TGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
5794188 ATTGGCAAATAGAAATATGAGGATGTGCCTATACCCACCTACCACCCTATCGATCCACAGCTTGC
580 ATTGGCAGA-AGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
5794253 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGACCACCCGCCAGCCCGCTCGTTTCATCGATTGG
644 GCATCCCGTCTCTCTGGCCGGCGTAGTG-CCG-TCA--C-CC-GCCCGCTCGTTTCGTCGGTTGG
5794318 CTTAG
703 CTTAG
5794323 GCATACGGAGTTCATTCCCAGTCTAAGATC
1 GCATACGGAGTTCATTCCCAGTCTAAGATC
5794353 AAACCAGACT
Statistics
Matches: 1317, Mismatches: 117, Indels: 49
0.89 0.08 0.03
Matches are distributed among these distances:
709 4 0.00
710 197 0.15
711 429 0.33
712 4 0.00
714 3 0.00
715 5 0.00
716 8 0.01
717 161 0.12
718 305 0.23
719 200 0.15
720 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (707 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGTAGCACATGCTAGG
CTTGGGCATGTGCTGGTGCCACATTTTTCTTCATAGGGCACCATCGTCGAGCATCGCTGGAGAAC
CTGACCGGCGGCATTAGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCCACATGATGTGAGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
AAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
AGAAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGGCGTAGTGCCGTCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:5794518 original size:26 final size:26
Alignment explanation
Indices: 5794482--5794534 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5794472 GTTGACTTAG
*
5794482 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
5794508 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
5794534 G
1 G
5794535 ATTGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:5795402 original size:26 final size:26
Alignment explanation
Indices: 5795366--5795418 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5795356 GTTGACTTAG
5795366 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5795392 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5795418 G
1 G
5795419 ATCGAACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5796021 original size:895 final size:894
Alignment explanation
Indices: 5793605--5798039 Score: 5791
Period size: 894 Copynumber: 5.0 Consensus size: 894
5793595 GTTGGCTTAG
* * * *
5793605 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCAAGGGTTGCGGCAGCACATGCTAGG
* * ** ** * *
5793670 CTCGTGCATGTGCTGGTGCTGCATTTTTCTTCGCTAGGGCACCATCACCAGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * *
5793735 ACCTGATCGGCAGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGT
131 ACCTGACCGGCGGCATTAGGGTTCC-GCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
5793800 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * *
5793865 GCCTCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTTAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
5793930 GGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
5793995 GCACGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAA
390 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
5794059 GTTGT-AAAAAATCTCGAACCGTAAAAACTTAT-AAAAATCGTGAAAAATAAAAAACGAGTCGTC
455 -TT-TCAAAAAATCCCGAACCGTAAAAAGTT-TCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
5794122 TTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
5794187 CATTGGCAAATAGAAATATGAGGATGTGCCTATACCCACCTACCACCCTATCGATCCACAGCTTG
582 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
5794252 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGACCACCCGCCAGCCCGCTCGTTTCATCGATTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG------C-CC-GCCCGCTCGTTTCGTCGGTTG
* * * * *
5794317 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTTCGGCAGCAAGA
704 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGA
* * * ** *
5794382 TCAGTAGCACGCAGAGGGGGACCC-AGTCGATCCCCGGCTTACGCATCTTGCCCCTCTGGCCGAC
769 TCGGTAGCACGCAGAGGGGGACCCGA-TCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
5794446 TGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAA
833 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
5794508 GCATATGGAGTTCATTCCCAGTCTAAGATTGAACCGGACCGAGGGTTGCGGCAGCACATGCAAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCAAGGGTTGCGGCAGCACATGCTAGG
* * * *
5794573 CTCGGGCAAGTGCCGGTGCCCCATTTTTCTTCACCGGGGCACCA---TC---GC-T----GGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
5794627 ACCTGATCGGCGGTATTACGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCACACATGATGTGC
131 ACCTGACCGGCGGCATTAGGGTTCCG-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
5794692 GATGGGTGCTGGTACTTGG-CCTTCATACTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 GATGGGTGCTGGTACTTGGCCCTT-ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* **
5794756 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTATCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
5794821 CGGGACACTTTTTTTGAAATGGTCACAAAATCTTGTACACTTC-AGGTTTTTAGCTG-ATTTGTT
324 GGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTT-TT
*
5794884 TTGTGCATGCCAACAAAAATACAAGGATC-TCGTCTACCAAGTTTGGAGCCAAAACTCCTTCCGA
386 TTGTGCATGCCAACAAAAATACAAGGATCAT-GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* ** * *
5794948 AAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCA
450 AAAAATTTCAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * *
5795013 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATGTACGAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
5795078 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCATCTACCACCCTATCGATCCACGGC-
580 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
5795142 TGCGCATCCCGTCCCTCTAGTCGACGTAGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
** * * * * *
5795207 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAAACAGAGGGTTGCGACAGCAAGATTGGCA
710 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGGTA
* *
5795272 GCACGCAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCACGCCCCTCTGGCCGGCTGAGCGC
775 GCACGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
5795337 CCGCACGCTCGTTTCCTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
5795392 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGCAGCACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCAAGGGTTGCGGCAGCACATGCTAGG
* * * *
5795457 CTCGAGCATGGGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
5795522 ACCTGACCGGCGGCATTGGGGTTCTAGCGATTGGGGGGGCCGGGGGGGTGTGCGCAAATTATGTG
131 ACCTGACCGGCGGCATTAGGGTTC-CGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* *
5795587 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
5795652 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
5795717 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
5795782 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAATTCCTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
5795847 ATTTCAAAAAATCCCGAACCGTAAAAAGTTACAAAAATCGTGAAAAATAGAAAACGAGCCATCTT
454 ATTTCAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * **
5795912 GCCATGAAACTTCACGTAAAGGCTTAAGGTACCATTCTATGAATTTACATCCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * ** * *
5795977 TTGGCACGCAGAAATATGAATATGTGCCTAAACCCATGTACCACCCTATCGATCCATGGCTTGCA
584 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * **
5796042 CATCCCGTCTCTCTGGCCGGCATAGTGCCCACCCGCCTGCTCGTTTCGTCGGTTTTCTTAGGCAT
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * * ** *
5796107 ACGGAGTTCATTCCCAGTCTAAGATCCGATCAGACTGAGGGTTGTGGCAGCAGGATTGACAACAC
714 ACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGGTAGCAC
* * * * * * *
5796172 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGTATCCCACCCCTCTGGCCGGTTGAGCACCAGC
779 GCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * * *
5796237 ACGCACGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCACAGTCTAA
844 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
5796288 GCATACGAAGTTCATTCCTAGTCTAAAATTGGA-TCAGACCAAGGTTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACT-GGACCAAGGGTTGCGGCAGCACATGCTAG
* * * * * *
5796352 GCT-GGGCACGTGCTGCTACCGCATTTTTATTCGTCGGGGCACCATCGTCGGAGCATTGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAG
** * * * *
5796416 AACCTGACCGATGGCATTACGGTTTCGACGATCGGGCGGGCCAGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTAGGGTTCCG-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
5796481 CGATGGCTGCTGGTACTTGGCCCTTATATTTGCCCTCTATCCCTCATCAAACCTCGAGAACGCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
5796546 ACCCCATTAAAGAGCATGTGAGATTTTACAGGTTTGCTGCCCGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
5796611 GGGGAGACTTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
5796676 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
5796741 ATTTCAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGGAAAATAGAAAACGAGTCGTCTT
454 ATTTCAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
5796806 GCAATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
***
5796871 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
5796936 CATCTCGTCTCTCTGGCCGACGTGGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * *
5797001 ACGGAGTTCATT-CTCAGTCTAAGATCAGACCGGACTGAGGGTTG-TAGTAGCAGGATCGATAGC
714 ACGGAGTTCATTCCT-AGTCTAAGATCAGACCAGACTGAGGGTTGCGA-CAGCAGGATCGGTAGC
* * * * * * *
5797064 ACACAGAGGGGGACTCGACCGATCCCTGGCTTGCGCATCCCACCCCTCCGGTCGGCTAAGCGCCC
777 ACGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* *
5797129 GCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAA
842 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
5797182 GCATACGAAGTTCATT-CC---C--AG-T----CT------A----------AG--CATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCAAGGGTTGCGGCAGCACATGCTAGG
* * * *
5797218 CT-GGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCTCCATCGTCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * *
5797282 ACCTGACCGACGGCATTCGAGTTCCGATGATC-GGGCGGCCGGGGGGGGTGTACGCACATGATGT
131 ACCTGACCGGCGGCATTAGGGTTCCG-CGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGT
* * *
5797346 GTGATGGGTGCTGGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTCGACAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
5797411 CACCCCCTTAAAGAGCATGTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
5797476 TGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAAGTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
5797541 GTGCATGCCAAAAAAAATACAAGGATCTTGTCTACCAAGTTTCGGGCCAAAACTCCTTCTGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
5797606 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
453 AATTTCAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* **
5797671 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATATACAAGCCATAAAAATTTC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
5797736 ATTGGCACTTC-GAAATATGAAGATGTGCGTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 ATTGGCAC-ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
5797800 CGCATTCCATCTCTCTGGCCGGCTTAGTGCCCGCCCGCCCTCCCGCTCGTATCGTCTGTCGGCTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG----CCCGCTCGTTTCGTCGGTTGGCTT
* ** * * *
5797865 AGGCATACGGAGTTTATTCCTAGTCTAAGATTGGACTAGA-TAGAGGGTTGTGACAGTAGGATCG
708 AGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACT-GAGGGTTGCGACAGCAGGATCG
* * * ** * *
5797929 GTAGCATGGAGAGGGGGACCTGATCGAT-TGTCGGCTTGCTCATCCCGCCCTTCTGGCCGGCTGA
772 GTAGCACGCAGAGGGGGACCCGATCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
5797993 ACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
836 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
5798040 GTCTAAGATC
Statistics
Matches: 3120, Mismatches: 368, Indels: 121
0.86 0.10 0.03
Matches are distributed among these distances:
864 6 0.00
865 90 0.03
866 474 0.15
867 2 0.00
869 2 0.00
870 160 0.05
871 3 0.00
877 1 0.00
884 287 0.09
885 2 0.00
886 1 0.00
887 3 0.00
888 1 0.00
890 3 0.00
891 6 0.00
892 220 0.07
893 272 0.09
894 667 0.21
895 397 0.13
896 424 0.14
897 6 0.00
900 1 0.00
903 92 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCAAGGGTTGCGGCAGCACATGCTAGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTAGGGTTCCGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTCAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGGTAGCACGC
AGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5796292 original size:26 final size:26
Alignment explanation
Indices: 5796262--5796313 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
5796252 GTTGACTTAG
5796262 GCATAC-AGAGTTCATTCAC-AGTCTAA
1 GCATACGA-AGTTCATTC-CTAGTCTAA
5796288 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
5796314 AATTGGATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 22 0.92
27 1 0.04
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:5797185 original size:26 final size:26
Alignment explanation
Indices: 5797156--5797211 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
5797146 GTTGACTTAG
* *
5797156 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5797182 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5797208 GCAT
1 GCAT
5797212 GCTAGGCTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5798211 original size:26 final size:26
Alignment explanation
Indices: 5798172--5798225 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
5798162 TGGGTTGACT
*
5798172 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
5798198 TAGGCATACAGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
5798224 TA
1 TA
5798226 AGATCAGACC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCCCAGTC
Found at i:5799906 original size:26 final size:26
Alignment explanation
Indices: 5799876--5799928 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5799866 GTTGACGTAG
5799876 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
5799902 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
5799928 G
1 G
5799929 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:5803715 original size:871 final size:871
Alignment explanation
Indices: 5801209--5805915 Score: 5713
Period size: 876 Copynumber: 5.3 Consensus size: 871
5801199 AACTCCTTCG
*
5801209 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * * * * *
5801274 ATTTTATTAATTTACAAGGCATAAAAATGACATCGACATGCAAAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * * **
5801339 CCACCTACCACCATATCGATCCACGACTTGCCCATCCCGTCTCTCTGATCGGCGTAGTGCCCGCC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC
* *
5801404 TGCCCGCCTGGCCGTTCGTTTCTTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
193 -GCCCGCC-CGCC--TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* *
5801469 CAGACCCA-ACCGAA-GGTTGCGACAGCAGGATCGACAGCA-TGAAGAGGGGGACCAGACCGATC
254 CAGA-CCAGACC-AAGGGTTGCGACAGCAGGATCGACAGCACT-CAGAGGGGGACCCGACCGATC
* * * * * ** ** * * *
5801531 CTCGGCTTTCGCATCCCGCCTCTTTGGCCTACTGAGTGCCCATATGCTCATTTCGTGAGTTGACT
316 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCAAGCTCGTTTCGTGGGTTGACT
* ** * * * *
5801596 TAGGCATACCGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTGGCGGCAGCACTTGCT
381 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGCACATGCT
* * *
5801661 AGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGG
446 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGG
* *
5801726 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGAGGTGTGCACACATGAT
511 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
* ** * *
5801790 ATGCGATGGGTGCTGGTACTTTTCCCATATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACT
576 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
*
5801855 CACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAGAGTGTCTGA
641 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
5801919 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTT
706 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTTGCTGAATTTTT
5801984 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AA
771 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* *
5802048 AAATATTTTCAAAAATCCCGAACTGCAAAAAGTTTCA
836 AAA-ATTTTAAAAAATCCCAAACTGCAAAAAGTTTCA
* * * *
5802085 AAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGGAGTCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * *
5802150 GTTGTATGAATTTACAAGCCACAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * * * *
5802215 CCACCTACCACCCTACCGATCCACGGCTTGCGCATACCGTCTCTATGGCTGGTGTAGTGCCCGCC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--
* * * *
5802280 CCCTGCACGCCCACTCGTTTCATCGATTGGCTTAGGAATAAGGAGTTCATTCCCAGTCTAAGATC
194 CCC-GC-C-CGC-CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * *
5802345 AGATCAGATCGAGGGTTACGGCAGCAGGATCGACAGCACGT-AGAGGGGGACCCGACCTATCCCC
255 AGACCAGACCAAGGGTTGCGACAGCAGGATCGACAGCAC-TCAGAGGGGGACCCGACCGATCCCC
* * * * **** ** * * ***** *
5802409 AGCTTGCGCATCCTGCCTCTCTGGCCGACCG-GCTTAGGCATA-CGAGGTTCATTCCCAGTC-TA
319 GGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCA-AGCTCGTTTCGTGGGTTGACTTA
* * * * * * * *
5802471 AGTATATGGAGTTCAATCCCAGTCTAAGATCGGA-CTGGACCGAGGGTTACGACAGCACATGATG
383 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGATC-GGACCGAGGGTTGCGGCAGCACATGCTG
* * * *
5802535 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCGTCGCCAGA
447 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGA
**
5802600 GAACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGAT
512 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGAT
*
5802665 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAACT
576 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
* * *
5802730 CACACCCCCTTAAAGAGCATTTGGGATTTTACAGGTCTGCTGCCAGTAGCCATTAAAATGTCTGA
641 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
5802795 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTTGTTGAATTTTT
706 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTTGCTGAATTTTT
* * * *
5802860 TTGTCCATGCCAAAAAAAATACAAGGATCCA-GTCTACCAAGTTTGGGGCTAAAACGCCTTCCGA
771 TTGTGCATGCCAACAAAAATACAAGGAT-CATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
*
5802924 AAAAATTTTAAAAAATCCCAAACTGTAAAAAGTTTCA
835 AAAAATTTTAAAAAATCCCAAACTGCAAAAAGTTTCA
* * *
5802961 AAAATCGTGAAAAATAGAAAACAAGTCATCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
5803026 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * *
5803091 CCACCTACCACCCTATCGATCCATGGCTTGCGAATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* ** * *
5803156 CGTCCG-CTCGTTTTGTTGGTTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCAGACCA
196 CGCCCGCCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* ** * *
5803220 GACCAAGGGTTACGACAGCAGGATCGGTAGCACTTAGAGGGGGACCCGATCGATCCCCGGCTTGC
261 GACCAAGGGTTGCGACAGCAGGATCGACAGCACTCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* * * *
5803285 GCATCTCGCCCCTCTGGTCGGCTGAGCACCCGCAAGCTCGTTTTGTGGGTTGACTTAGGCATACG
326 GCATCCCGCCCCTCTGGCCGACTGAGCACCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACG
*
5803350 GAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGC
391 GAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * *
5803415 ATGTGCTGATGCTGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGAC
456 ATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * * * *
5803480 CGGCAGCATTGGGGTTCCGATGATCGGGGGGGTCGGGGGGGTGTGTGCACATGATGTGCAATTGG
521 CGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA-TGG
5803545 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCT-AGAACTCACACCCC
585 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-TGAGAACTCACACCCC
* * * *
5803609 CTTAAAGAGCATTTAAGATTTAACAAGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGA
649 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
5803674 CACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCTAGTTTTTTGCTGAATTTTTTTGTCCAT
714 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTTGCTGAATTTTTTTGTGCAT
5803739 GCCAA-AAAAATACAAGGATCCA-GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGGAAAAAAAT
779 GCCAACAAAAATACAAGGAT-CATGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-G-AAAAAAT
* * *
5803802 TTGAAAAAATCCCCAACCGCAAAAAGTTTC-
841 TTTAAAAAATCCCAAACTGCAAAAAGTTTCA
* *
5803832 AAAATCGTG-AAAATAGAAAACAAGTGCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGCAC
1 AAAATCGTGAAAAATAGAAAACGAGT-CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * * *
5803896 CATTGTATGAATTTGACAAGCCATAAAAATTGCATTGGCATGCAAAAATACGAAGAGGTGCCTAA
65 CATTGTATGAATTT-ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* ** *
5803961 ACCCCACCTACCACCCTTGGTCGATCCACTGGCTTTTGCATCCCGTCTCTCTGGCTGGCGTAGTG
129 A-CCCACCTACCACCC-T-ATCGATCCAC-GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT-
* * * * *
5804026 GCCCACCCGCCCGCCCGCTCGTTTCCTCGGTTGGCTTAGTCATACAGAGTTCATTTCCCCAATCT
189 GCCCGCCCGCCCG--C-CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA-TT-CCCAGTCT
* ** ** * * * * ** * *
5804091 AGAAATTGGACTGGAGGCATGGGTTGCGGCGGCAGGATTAACAGCACGCAGAGGGGGACCCAACC
249 A-AGATCAGACCAGA-CCAAGGGTTGCGACAGCAGGATCGACAGCACTCAGAGGGGGACCCGACC
* * * *
5804156 GATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGGGCACCCGCACGCTCGTTTCATGGGTT
312 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCAAGCTCGTTTCGTGGGTT
5804221 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCGG
377 GACTTAGGCATACGGAGTTCATTCCCAGTCT----A-----AG---ATT----G-----GATC--
* * * *
5804286 ATGTGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATTTGCTGGTGCCGTATTTTTCTTC
419 --G-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * *
5804351 ATCGGGGCACCATCGTCGGAGCAACACCGGAGAACCTGACCGACTGCATTGGGGTTCCGATGATC
481 ATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
* * * *
5804416 GAGGGGGCC-GGGGGGTGTGCGCACATGATGTACAATGGGTGCTGGTACTTGGCCTTTATATTGG
546 GGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * ** * *
5804480 CCCCTTATACCTCATCAAACCTTGAGAACTCACAAGCCCTTAAAGAGCATTTGAGATTTAACAAG
611 CCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * * *
5804545 TTTGCTGCGAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAGAATAT
676 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
5804610 TGTACACTTCTAGTTTTTTGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCT
741 TGTACACTTCTAGTTTTTTGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCT
** * *
5804675 ACCAAGTTTGGGGCCAAAAC-CCTTCCGAAAAAATTTTAAAAAATCCTGAATTGCAAAAAGTTTT
806 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACTGCAAAAAGTTTC
*
5804739 G
871 A
* *
5804740 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAAGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
5804805 ATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * * *
5804870 CCACCTACCACCCTATTGATCAATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTACTGCCCGCC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * *
5804935 CGCCTACTCGCCCCCTC-TGTTCATCGGTTGGCTTATGCATACAGAGTTCATTCCCAGTCTAACA
196 CG-C--C-CG---CCTCGT-TTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* *** * * * * *
5804999 TCAGACCCGATTGAGCGTTGC-AGCAGCAGGATTGGCGGCA-TGCAAAGGGGGACCCGACCGATC
253 TCAGACCAGACCAAGGGTTGCGA-CAGCAGGATCGACAGCACT-CAGAGGGGGACCCGACCGATC
* * * *
5805062 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCTCGTACGCTCGTTTCGTGGGTGGACT
316 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCAAGCTCGTTTCGT--G-GG---
* *
5805127 TAGGCATACAGAGTTCATTCCCAGTCTAGGCATACGGAGTTCATTCACAGTCTAAGATTGGATCA
375 T-----T-----G---A----C--T-TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCG
* * *
5805192 GACCGAGGGTTGCGGTAGCACATGCTGGCCTCGGGAATGTGCTGGTGCCGCATTTTTCTTC-TCC
420 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAT-C
* * **
5805256 GGGGCACCATC-ACTGGAGCATCGTCGGAGAACCTGATTGGCGGCATTGGGGTTCCGACGAT---
484 GGGGCACCATCGTC-GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
* * *
5805317 ------CGGGGGGTTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCACTTATATTGGCC
548 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
5805376 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAGAGGTT
613 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
5805441 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTT
678 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * *
5805506 TACACTT-TGAGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTA
743 TACACTTCT-AGTTTTTTGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTA
* *
5805570 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCA
807 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACTGCAAAAAGTTTCA
* *
5805635 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
5805700 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGTCATGCAGAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* *
5805765 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTACTGCCCGTC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C--C
* * * * *
5805830 CGCCCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGTATATGGAGTTCATTCCCAGTCTAAGAT
192 CGCCCGCCCG--C-CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
**
5805895 CAGACTGGACCAAGGGTTGCG
254 CAGACCAGACCAAGGGTTGCG
5805916 GTAGCACTTG
Statistics
Matches: 3310, Mismatches: 404, Indels: 214
0.84 0.10 0.05
Matches are distributed among these distances:
868 1 0.00
869 124 0.04
870 98 0.03
871 401 0.12
872 84 0.03
873 161 0.05
874 29 0.01
875 211 0.06
876 574 0.17
877 20 0.01
881 30 0.01
882 2 0.00
883 8 0.00
884 8 0.00
885 124 0.04
889 1 0.00
893 2 0.00
894 250 0.08
895 274 0.08
896 2 0.00
897 4 0.00
898 1 0.00
899 7 0.00
901 3 0.00
902 201 0.06
903 39 0.01
904 15 0.00
905 7 0.00
906 51 0.02
907 84 0.03
908 61 0.02
909 212 0.06
910 63 0.02
911 120 0.04
912 1 0.00
913 1 0.00
916 3 0.00
918 1 0.00
919 2 0.00
921 1 0.00
924 1 0.00
925 1 0.00
927 1 0.00
928 26 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (871 bp):
AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
CGCCCGCCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
GACCAAGGGTTGCGACAGCAGGATCGACAGCACTCAGAGGGGGACCCGACCGATCCCCGGCTTGC
GCATCCCGCCCCTCTGGCCGACTGAGCACCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
CGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTTGCTGAATTTTTTTGTGCATGC
CAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
AAAATCCCAAACTGCAAAAAGTTTCA
Found at i:5804262 original size:26 final size:26
Alignment explanation
Indices: 5804228--5804280 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5804218 GTTGACTTAG
5804228 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5804254 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5804280 G
1 G
5804281 ATCGGATGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5805166 original size:26 final size:26
Alignment explanation
Indices: 5805127--5805180 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
5805117 TGGGTGGACT
*
5805127 TAGGCATACAGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCACAGTC
*
5805153 TAGGCATACGGAGTTCATTCACAGTC
1 TAGGCATACAGAGTTCATTCACAGTC
5805179 TA
1 TA
5805181 AGATTGGATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCACAGTC
Found at i:5807284 original size:36 final size:36
Alignment explanation
Indices: 5807207--5807277 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
5807197 ATCCTTCCAA
*
5807207 AAAAATTTTTAAAAATCTCGAACCGTAAAAAGTTTC
1 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTC
5807243 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTT
1 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTT
5807278 TGAAAATCAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.49, C:0.13, G:0.08, T:0.30
Consensus pattern (36 bp):
AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTC
Found at i:5807293 original size:36 final size:36
Alignment explanation
Indices: 5807217--5807294 Score: 111
Period size: 36 Copynumber: 2.2 Consensus size: 36
5807207 AAAAATTTTT
**
5807217 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATTTTA
1 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATA
** *
5807253 AAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATG
1 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATA
5807289 AAAAAT
1 AAAAAT
5807295 AGAAAACGAG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.51, C:0.13, G:0.10, T:0.26
Consensus pattern (36 bp):
AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATA
Found at i:5807727 original size:26 final size:26
Alignment explanation
Indices: 5807649--5807720 Score: 108
Period size: 26 Copynumber: 2.8 Consensus size: 26
5807639 GTTGACTTAG
*
5807649 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
5807675 CCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5807701 GCATACAGAGTTCATTCCCA
1 GCATACGGAGTTCATTCCCA
5807721 ATTTAAGGTC
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5809488 original size:26 final size:26
Alignment explanation
Indices: 5809452--5809504 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5809442 GTTGACTTAT
* *
5809452 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5809478 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5809504 G
1 G
5809505 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5810382 original size:26 final size:26
Alignment explanation
Indices: 5810342--5810394 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5810332 GTTGACTTAG
* *
5810342 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
5810368 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
5810394 G
1 G
5810395 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Done.