Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 43 of 129
Found at i:5810600 original size:890 final size:887
Alignment explanation
Indices: 5807676--5810611 Score: 3671
Period size: 905 Copynumber: 3.3 Consensus size: 887
5807666 TCAGTCTAAC
* * * * * *
5807676 CATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAATTTAAGGTCGGACTGGACC
1 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * * *
5807741 GAGGGTTGCGGCAGCACATGCTGGGCTCGTGCATGTGCTGGTGTCACATTTTTCTTCGTCGAGGA
66 GAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGC
* * * *
5807806 ACCATCACCGGAGCATCGCCAGAGAACCTGACCGGTGGCATTTGGGTTCTGACGATCAGGGGGCC
131 ACCATCACCGGAGCATCACCAGAGAACCTGACCGGCGGCA-TTGGGTTCTGGCGATCGGGGGGCC
* * *
5807871 AGGGGGTGTGCACACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCC
195 GGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCC
* *
5807936 CTGATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCA
259 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
5808001 GTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTGAAATGGTCTCAAAATCTTGTACACTTC
324 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * * *
5808066 AAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATAAAAGCATCACGTCTTCCATGTTTG
389 AAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * * *
5808131 GGGACAAAACTCCTTTCGAAAAAATTTAAAAAAATCTCGAATCGCAAAAAGTTTCAAAAATTGTA
454 GGGCCAAAACTCCTTTCGAAAAAATTTAAAAAAATCTCGAACCACAAAAGGTTT-AAAAATCGTG
* *
5808196 AAAAATAGAAAACGAGTCGTCTTGCCATCAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGA
518 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
5808261 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAGGAAGATGTACCTAAACCAACCTATC
583 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACC
* * *
5808326 ACCCTATCGATACACGGCTTGCTCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCCT
648 ACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTTGCCGACGTAGT----GCCCGCCCGCCT
* * * *
5808391 GCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGA-CTGGACTT
709 -CT-ATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGAC-G
* * * * * * * *
5808455 AGGGTTGTGGTAGTAGGATCGACAGCACGCAGAGGGGGACCTGATCGATCCCCGGCTTGCGCATC
770 AGGGTTATGGCAGCAGGATCGGCAGCACTCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGAATC
* * * *
5808520 CTGCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
835 C-GCCCCTCTGGCAGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGG
*
5808574 CATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G--------C---C-----T------GGACT
1 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * * * * * *
5808613 GAGGGTTGTGGCAGCACATGCTGGGCTTGCGCATGTGCTAGTGCCGCATTTTTCTTCGCCGGTGC
66 GAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGC
* ** * * * *
5808678 ACCATCACCAGAGCATTGCCGGAGAACCTGATCGGCGGCATTGGGGTTCTGGTGATCGGGGGGGT
131 ACCATCACCGGAGCATCACCAGAGAACCTGACCGGCGGCATT-GGGTTCTGGCGATC-GGGGGGC
* *
5808743 CGGGGGGTATGCACACATGATGTGTGATGGGTGCTGGTACTTGGCGCTTATATTGGCCCCTATCC
194 CGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCC
* * * *
5808808 CTAACCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTA
259 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
5808873 GTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTC
324 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
5808938 AAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA--AATGGTT
389 AAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTT
* * * *
5809001 GGGCCCAAAACTCCTTTCGAAAAAATTAAAAAAAATCCCGAACCGTA-AAAAGTTTTAAAAATCG
453 GGGGCCAAAACTCCTTTCGAAAAAATTTAAAAAAATCTCGAACC--ACAAAAGGTTTAAAAATCG
*
5809065 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAA
516 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* ** *
5809130 GAATTTACAAGCCATACAAATGGCATTGGCATGC-GAAAATATGAAGATGTGCCTAAACCCACCT
581 GAATTTACAAGCCATAAAAATGGCATTGGCACACAG-AAATATGAAGATGTACCTAAACCCACCT
* * * * *
5809194 ACCACCCTATCGATCGACGGCTTACACATCCCATTTCT-TTGGCCGGCGTAGTGCCCACCCGCCC
645 ACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTT-GCCGACGTAGTG----CCCGCCC
* * *
5809258 GCTCACCCGTCTACTCGTTTCTTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGCCTAAGATC
705 G-----CC-TCTA----TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
5809323 AGATCGGACCGAGGGTTATGGCAGTC-GGATCGGTAACA-TGTAGAGGGGGACCCGGCCAATCCC
760 AGATCGGA-CGAGGGTTATGGCAG-CAGGATCGGCAGCACT-CAGAGGGGGACCCGGTCGATCCC
* * * * *
5809386 CGACTTGCGAATCCCGCCCCTCTGGCAGGTTGAGCGCCCGTACAGTCATTTCGTGGGTTGACTTA
822 CGGCTTGCGAAT-CCGCCCCTCTGGCAGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTA
*
5809451 TG
886 GG
* *
5809453 CATATGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
1 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * ** * * * *
5809518 GAGGGTTACAGCAGCACACACTAGGATCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGTC
66 GAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGC
** * * * *
5809583 ACCATCGTCGGAGCTTCACCGGAGAACCTGACCGACGGCATTAGGGTTCTGGCAATCGGGGGGCC
131 ACCATCACCGGAGCATCACCAGAGAACCTGACCGGCGGCATT-GGGTTCTGGCGATCGGGGGGCC
* * *
5809648 GGGGGGGTGTGCGCACATGCTGTGTGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCTATCC
195 -GGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCC
* *
5809713 CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGGTTGCTGCCA
259 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
5809778 GTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTC
324 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
** * *
5809843 GTGTTTCTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTG
389 AAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * *
5809908 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCACAAAAGGTTTAGAAAATCGTG
454 GGGCCAAAACTCCTTTCGAAAAAATTTAAAAAAATCTCGAACCACAAAAGGTTTA-AAAATCGTG
* * *
5809973 AAAAATAGAAAATGAGTCGCCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
518 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
5810038 ATTTACAAGCCATAAAAATGACATTGGCACACAGAAATATGAAGATGTCCCTAAACCCACCTACC
583 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACC
*
5810103 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTTGCCGACGTAGTGCCCGCCCG-CT-TAT
648 ACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTTGCCGACGTAGTGCCCGCCCGCCTCTAT
* *
5810166 TTCATCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGAT-AGGATCAGATCGAGGGTT
713 TTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GATCGGA-CGAGGGTT
** * *
5810230 ACAGCAGCAGGATCGGCAGCACTCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGTATCTCACCC
776 ATGGCAGCAGGATCGGCAGCACTCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGAATC-CGCCC
* * * * ** *
5810295 CACTGGCTGGCTAAGTGCTTGCACTCTCGTTTCGTGGGTTGACTTAGG
840 CTCTGGCAGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGG
* *
5810343 CATACGGGGTTCATTCCCAGTCTAAGCATACGGAGATCATTCCCAGTCTAAGATCGGACCGGACC
1 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * *
5810408 GAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATTTGCTGGTGCTACATTTTTCTTCATCGGGGC
66 GAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGC
* * * *
5810473 ACCAT-GCCGGAGCATCACCAGAGAACCTGACCGGTGGCATTGGGCTTCCGGCGATCGGGGGGGT
131 ACCATCACCGGAGCATCACCAGAGAACCTGACCGGCGGCATTGGG-TTCTGGCGATC-GGGGGGC
*
5810537 CGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
194 CGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATC
*
5810602 CCTCCTCAAA
258 CCTCATCAAA
5810612 TGGTAACAAA
Statistics
Matches: 1747, Mismatches: 225, Indels: 140
0.83 0.11 0.07
Matches are distributed among these distances:
867 1 0.00
870 3 0.00
871 217 0.12
872 291 0.17
873 59 0.03
876 4 0.00
877 1 0.00
878 1 0.00
879 165 0.09
880 6 0.00
881 1 0.00
882 1 0.00
883 1 0.00
886 1 0.00
888 3 0.00
889 96 0.05
890 286 0.16
891 2 0.00
894 4 0.00
895 2 0.00
896 2 0.00
897 2 0.00
898 25 0.01
899 1 0.00
902 8 0.00
904 8 0.00
905 341 0.20
906 210 0.12
907 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (887 bp):
CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
GAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGC
ACCATCACCGGAGCATCACCAGAGAACCTGACCGGCGGCATTGGGTTCTGGCGATCGGGGGGCCG
GGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCT
CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAA
GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
GCCAAAACTCCTTTCGAAAAAATTTAAAAAAATCTCGAACCACAAAAGGTTTAAAAATCGTGAAA
AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACC
CTATCGATCCACGGCTTGCACATCCCGTCTCTCTTGCCGACGTAGTGCCCGCCCGCCTCTATTTC
ATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACGAGGGTTATGGC
AGCAGGATCGGCAGCACTCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGAATCCGCCCCTCTGG
CAGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGG
Found at i:5813302 original size:26 final size:26
Alignment explanation
Indices: 5813266--5813318 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5813256 GATGACTTAG
*
5813266 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5813292 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5813318 G
1 G
5813319 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5814198 original size:26 final size:26
Alignment explanation
Indices: 5814169--5814221 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5814159 GATGACTTAG
*
5814169 GCATACGGAGTTCATTCCTAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
* *
5814195 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
5814221 G
1 G
5814222 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:5814803 original size:900 final size:898
Alignment explanation
Indices: 5812820--5815455 Score: 3977
Period size: 903 Copynumber: 2.9 Consensus size: 898
5812810 TTTCTTCGTC
* *
5812820 GAGGCCAAAAATCCTT-TCGAAAAAATTTTAAAAAATCCCGAACC-CTAAAAAGTTTCAAAAATC
1 GAGGTCAAAAATCATTCT-GAAAAAATTTTAAAAAATCCCGAACCGC-AAAAAGTTTCAAAAATC
*
5812883 ATGAAAAATAGAAACCGAGTCATCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
64 ATGAAAAATAGAAAACGAGTCATCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
5812948 TGAATTTACAAGCCATAAAAATGGCTTTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
129 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACTT
* *
5813013 GCCACCCTATCGATCCATGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTG
194 GCCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
* *
5813078 CCCACTGCTCGTTTCGTCGGTCGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTTGACCA
259 CCCACTGCTCGTTTCGTCGGTCGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACCG
* * * * * ** * * *
5813143 GACCAAGGGTTGCAGCAGCAAGATCGATAGCACGCAGAGAGGGACCTTGTCGATCACGGGCTTAC
324 GATCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCGGGCTTGC
* *
5813208 GCATCCTGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGATGACTTAGGCATATG
389 GCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGATGACTTAGGCATATG
* *
5813273 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGT
454 GAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGT
*
5813338 TACGGCAGCACATGCT-AGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT
519 TACGGCAGCACATGCTGA-GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* * * *
5813402 CGCCGGAGCATC-GTCGGAGAACCTAACCGGCGGCATTTGGGTTCCAACGATCGGGGGGGCCGGC
583 CGCCGGAGCATCACT-GGAGAACCTGACCGACGGCA-TTGGGTTCC-ACGATC-GGGGGG-TGG-
* *
5813466 GGGGTGTGCGCACATGATATGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCT
642 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
5813531 CATCAAACCTCGAGAACTCCCACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGT
707 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
5813596 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
772 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
** * *
5813661 GTTTTTAGCTAAATTTTTTTTTGCATGCCAAAAAAAATAAAAGCATCACGTCTACCAAGTTT
837 GTTTTTAGCTAAATTTTTTTGAGAATGCCAAAAAAAATAAAAGCATCACGTCTACCAAATTT
* * * *
5813723 GAGGTCAAAAATCCTTCTGAGAGAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
1 GAGGTCAAAAATCATTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
*
5813788 GAAAAATAGAAAATGAGTCATCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
66 GAAAAATAGAAAACGAGTCATCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
5813853 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACTTGC
131 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACTTGC
5813918 CACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCC
196 CACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCC
* * *
5813983 CACTGCTCGTTTCGTCGATCGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATTGGACCGGA
261 CACTGCTCGTTTCGTCGGTCGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACCGGA
* * * * *
5814048 TTGAGGGATGCGGCAGCAGGATCAACAGCACGTAGAGGGGGACCAGGCCGATCCCGGGCTTGCGC
326 TCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCGGGCTTGCGC
* * *
5814113 ATCCTGCCCCTCTGGCCGACTGAGCGCCCGTACGCTCGTTCCGTGGGATGACTTAGGCATACGGA
391 ATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGATGACTTAGGCATATGGA
* *
5814178 GTTCATTCCTAGTATAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTA
456 GTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTA
* * * *
5814243 CGGTAGCACATTCTGAGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
521 CGGCAGCACATGCTGAGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC
*
5814308 CGGAGCATCACTGGAGAACCTGACCGACGGCATTGGCGTTCCGATGATCGGGGGGTGGGGGGTGT
586 CGGAGCATCACTGGAGAACCTGACCGACGGCATTGG-GTTCC-ACGATCGGGGGGTGGGGGGTGT
*
5814373 GCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
649 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
*
5814438 CCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
714 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
5814503 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
779 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* ** * * * *
5814568 GCTGAATTTTTTTGAGAATGTGAAAAAAAGTACAAGGATCACGTCTAGCAAATTT
844 GCTAAATTTTTTTGAGAATGCCAAAAAAAATAAAAGCATCACGTCTACCAAATTT
* * *
5814623 GGGGTGAAAACTCATT-TGGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
1 GAGGTCAAAAATCATTCT-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* *
5814687 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
65 TGAAAAATAGAAAACGAGTCATCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * ** * *
5814752 GAATTTAAAAGCCATAAAAATGGCATTGGGATGCAAAAATATGAAGATGTGCCTAAACCCACTTA
130 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACTTG
* * *
5814817 CCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAAGTAGTGCCCGCCCGCCCG-
195 CCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC
* * * *
5814881 ---CT--T-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGG
260 CCACTGCTCGTTTCGTCGGTCGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACCGG
* * * * * * *
5814940 ATCGAGGGTTGGGGCAACAAGATTGGCAGCACACAGAGGGGGACCCGACCGATCCTC-GGCTTGC
325 ATCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACCAGGCCGATCC-CGGGCTTGC
* * * *** *
5815004 GTATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGTTCGTTTTACGGGTTGACTTAGGCATATG
389 GCATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGATGACTTAGGCATATG
* * *
5815069 GAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGAACCAGACCGAGGGT
454 GAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGT
* * * * *
5815134 TACGACAGCACATGCTGGGCTCGGGCATGTGCTGTTGCCGACATTTTTCTTTGCCGGGGCACCAT
519 TACGGCAGCACATGCTGAGCTCGGGCATGTGCTGGTGCCG-CATTTTTCTTCGTCGGGGCACCAT
* * *
5815199 CACCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCAGCGATTGGGAGGGTCGGGG
583 CGCCGGAGCATCACTGGAGAACCTGACCGACGGCATT-GGGTTCCA-CGATCGGG-GGGT-GGGG
*
5815264 GACGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCT
644 G--GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
5815329 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT-CTAGGTTTGCTGCCAG
707 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC-AGGTTTGCTGCCAG
5815393 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
771 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
5815456 AGGCATATGG
Statistics
Matches: 1583, Mismatches: 135, Indels: 35
0.90 0.08 0.02
Matches are distributed among these distances:
893 249 0.16
894 69 0.04
895 6 0.00
896 7 0.00
897 1 0.00
898 184 0.12
899 1 0.00
900 477 0.30
901 2 0.00
902 10 0.01
903 574 0.36
904 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GAGGTCAAAAATCATTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
GAAAAATAGAAAACGAGTCATCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACTTGC
CACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCC
CACTGCTCGTTTCGTCGGTCGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAGACCGGA
TCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCGGGCTTGCGC
ATCCTGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGATGACTTAGGCATATGGA
GTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTA
CGGCAGCACATGCTGAGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC
CGGAGCATCACTGGAGAACCTGACCGACGGCATTGGGTTCCACGATCGGGGGGTGGGGGGTGTGC
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TAAATTTTTTTGAGAATGCCAAAAAAAATAAAAGCATCACGTCTACCAAATTT
Found at i:5815098 original size:26 final size:26
Alignment explanation
Indices: 5815062--5815114 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5815052 GTTGACTTAG
5815062 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
5815088 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
5815114 G
1 G
5815115 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:5815504 original size:26 final size:26
Alignment explanation
Indices: 5815458--5815510 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
5815448 GTACACTTAG
*
5815458 GCATATGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
*
5815484 GCATACGGAGCTT-ATTGCCAGTCTAA
1 GCATACGGAG-TTCATTACCAGTCTAA
5815510 G
1 G
5815511 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:5815786 original size:394 final size:396
Alignment explanation
Indices: 5815056--5815849 Score: 1202
Period size: 394 Copynumber: 2.0 Consensus size: 396
5815046 TTACGGGTTG
* *
5815056 ACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGAA
1 ACTTAGGCATATGGAGTTCATTACCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGAA
* ** * *
5815121 CCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGTTGCCGACATTTTTCTTT
66 CCAGACCAAGGGTTACGACAGCACATGCTGGGCTCGACCATGTGCTGGTGCCGACATTTTTCTTC
* *
5815186 GCCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCAGCGATT
131 GCCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGACGGCATTAGGGTTCCAGCGATC
* * *
5815251 GGGAGGGTCGGGGGACGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTG
196 GGGAGGGCCGGGGGACGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * ** * * *
5815316 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTCTAG
261 GCCCCCTATCCCTCATCAAACATCAAGAACTCACACCCCAATAAAGAGCATTTAAGATTGTATAG
* *
5815381 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
326 GTTTGCTGCCAGTAGCCATCAAAGTGTCTGAAATGGGGACACTTTTTGCAAATGGTCACAAAATC
5815446 TTGTAC
391 TTGTAC
5815452 ACTTAGGCATATGGAGTTCATTACCAGTCTAAGCATACGGAGCTT-ATTGCC-AGTCTAAGATC-
1 ACTTAGGCATATGGAGTTCATTACCAGTCTAAGCATACGGAG-TTCATT-CCTAGTCTAAGATCG
* * * *
5815514 AGACCAGACCAAGGGTTGCGGCGGCACATGCTGGGCTCGACCATGTGCTGGTGCCG-TATTTTTC
64 A-ACCAGACCAAGGGTTACGACAGCACATGCTGGGCTCGACCATGTGCTGGTGCCGACATTTTTC
* * * * *
5815578 TTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGACGGCATTAGGGTTCCGGTG
128 TTCGCCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGACGGCATTAGGGTTCCAGCG
* *
5815643 ATCGGGGGGGCCGGGGGGC-TGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
193 ATCGGGAGGGCCGGGGGACGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
5815707 TTGGCCCCCTATCCCTCATCAAACATCAAGAACTCACACCCCAATAAGGAGCATTTAAGATTGTA
258 TTGGCCCCCTATCCCTCATCAAACATCAAGAACTCACACCCCAATAAAGAGCATTTAAGATTGTA
* * *
5815772 TTGGTTTGCTGCCAGTTGCCATCAAAGTGTCTGGAATGGGGACACTTTTTGCAAATGGTCACAAA
323 TAGGTTTGCTGCCAGTAGCCATCAAAGTGTCTGAAATGGGGACACTTTTTGCAAATGGTCACAAA
5815837 ATCTTGTAC
388 ATCTTGTAC
5815846 ACTT
1 ACTT
5815850 CGAGTTTTTA
Statistics
Matches: 359, Mismatches: 36, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
394 173 0.48
395 81 0.23
396 101 0.28
397 4 0.01
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.26
Consensus pattern (396 bp):
ACTTAGGCATATGGAGTTCATTACCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGAA
CCAGACCAAGGGTTACGACAGCACATGCTGGGCTCGACCATGTGCTGGTGCCGACATTTTTCTTC
GCCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGACGGCATTAGGGTTCCAGCGATC
GGGAGGGCCGGGGGACGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
GCCCCCTATCCCTCATCAAACATCAAGAACTCACACCCCAATAAAGAGCATTTAAGATTGTATAG
GTTTGCTGCCAGTAGCCATCAAAGTGTCTGAAATGGGGACACTTTTTGCAAATGGTCACAAAATC
TTGTAC
Found at i:5815992 original size:26 final size:26
Alignment explanation
Indices: 5815956--5816005 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
5815946 GACCTAGGCC
*
5815956 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTATAAGCA
5815982 TACGGAGTTCATTCCCAGTATAAG
1 TACGGAGTTCATTCCCAGTATAAG
5816006 ATTAGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTATAAGCA
Found at i:5816169 original size:26 final size:26
Alignment explanation
Indices: 5816138--5816190 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5816128 GTTGACTTAG
*
5816138 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
*
5816164 GCATACGGAGTTCATGCCTAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
5816190 G
1 G
5816191 ATCGAATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATGCCCAGTCTAA
Found at i:5817073 original size:26 final size:26
Alignment explanation
Indices: 5817037--5817089 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5817027 GTTGACTTAG
5817037 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
5817063 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
5817089 G
1 G
5817090 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:5817768 original size:26 final size:26
Alignment explanation
Indices: 5817738--5817788 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5817728 TGACTGAGGT
5817738 ATACGAAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
* *
5817764 ATACGGAGTTCATTCCGAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
5817789 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:5817885 original size:11 final size:11
Alignment explanation
Indices: 5817869--5817901 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
5817859 GTCGGGGCAC
*
5817869 CATCGCCTGAG
1 CATCGCCGGAG
5817880 CATCGCCGGAG
1 CATCGCCGGAG
5817891 CATCGCCGGAG
1 CATCGCCGGAG
5817902 AACTTGACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.36, G:0.33, T:0.12
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:5818206 original size:709 final size:700
Alignment explanation
Indices: 5816843--5818246 Score: 2089
Period size: 709 Copynumber: 2.0 Consensus size: 700
5816833 CATAGTGCCT
*
5816843 GCCCGCCCGTCCGCTCGTTTCATCGATTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAGATC
1 GCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAGATC
* * * * *
5816908 GGACCAGACCGAGGGTTGCGGTAGCAGGATCGATAGCACGTAGAGGGGGACCCGACCGATCCTCG
66 AGACCAGACCGAGGGTTGCGGTAGCACGATCGATAGCACATAGAGGGGGACCCGACCGATCCCCA
* * *
5816973 GCTTGCCCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGG
131 ACTTGCCCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTGAGG
* * * *
5817038 CATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
196 CATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* *
5817103 GAGGGTTGTGGCAGCACATCCTGGGCTCGGACATGTGCTGGTGCCATATTTTTCTTCACCGGGGC
261 GAGGGTTGCGGCAGCACATCCTGGGCTCGGACATGTGCTGGTGCCACATTTTTCTTCACCGGGGC
**
5817168 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGCCC
326 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGCCC
* * *
5817233 GGAGGGGTGTGTGCGCACATGATGTGTGATGGGTGCTGGTAGTTAGCCCTTATATTGGCCCCCTA
391 GGAGGGGTGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTA
* * *
5817298 TCCCTGATCAAATCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
456 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTG
5817363 CCAGTAGCCATTAAAGTGTCTAACATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACAC
521 CCAGTAGCCATTAAAGTGTCTAACATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACAC
* * * *
5817428 TTTGAGTTTTTAGCTGAATTTTTCTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
586 TTCGAGTTTTTAGCTCAATTTTTCTGTGCATGCCAACAAAAATAAAAGCATCACGTCTACCAAGT
*
5817493 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCCC
651 TTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCCC
* * * * *
5817543 GCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCGCAGTCTAAGATC
1 GCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAGATC
* * *
5817608 AGACCAGACCGATGGTTGCGGTAGCACGATCGATAGCACATAGAGGGGGACTCGATCGATCCCCA
66 AGACCAGACCGAGGGTTGCGGTAGCACGATCGATAGCACATAGAGGGGGACCCGACCGATCCCCA
** *
5817673 ACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCGGCAC-CTCGTTTCATGGGTTGACTGAGG
131 ACTTGCCCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTGAGG
* *
5817737 TATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCGAGTCTAAGATCGGACCAGACC
196 CATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* * **
5817802 GAGGGTTGCGGCAGCACATGCTGGGCTC-GAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
261 GAGGGTTGCGGCAGCACATCCTGGGCTCGGA-CATGTGCTGGTGCCACATTTTTCTTCACCGGGG
* **
5817866 CACCATCGCCTGAGCATCGCCGGAGCATCGCCGGAGAACTTGACCGACGGCATTGGGGTTCCGGT
325 CACCAT---C---G--T---CGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
* * * *
5817931 GATCGGTGGGGCCTG-GGGG-GTGTGCGTACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTA
379 GATCGG-GGGCCCGGAGGGGTGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTAGCCCTTA
** *
5817994 TATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTTTAGATTT
443 TATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
5818059 TACAAGTTTGGTGCCAGTAGCCATTAAAGTGTCTGAA-ATGGGGACACTTTTTTCAAATGGTCAC
508 TACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AACATGGGGACACTTTTTTCAAATGGTCAC
* *
5818123 AAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTTTGTGCATGCCAACAAAAATAAAAGCAT
572 AAAATATTGTACACTTCGAGTTTTTAGCTCAATTTTTCTGTGCATGCCAACAAAAATAAAAGCAT
* * * *
5818188 CATGTCTACCAGGTTTGGGGCCAAAACCCCTTCTGAAAAAATTTTAAAAAATCTTGAAC
637 CACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATCTCGAAC
5818247 TACAAAAAGT
Statistics
Matches: 628, Mismatches: 62, Indels: 19
0.89 0.09 0.03
Matches are distributed among these distances:
698 2 0.00
699 141 0.22
700 153 0.24
702 1 0.00
705 1 0.00
707 1 0.00
709 271 0.43
710 52 0.08
711 6 0.01
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (700 bp):
GCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAGATC
AGACCAGACCGAGGGTTGCGGTAGCACGATCGATAGCACATAGAGGGGGACCCGACCGATCCCCA
ACTTGCCCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTGAGG
CATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
GAGGGTTGCGGCAGCACATCCTGGGCTCGGACATGTGCTGGTGCCACATTTTTCTTCACCGGGGC
ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGCCC
GGAGGGGTGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTA
TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTG
CCAGTAGCCATTAAAGTGTCTAACATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACAC
TTCGAGTTTTTAGCTCAATTTTTCTGTGCATGCCAACAAAAATAAAAGCATCACGTCTACCAAGT
TTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCCC
Found at i:5820561 original size:879 final size:876
Alignment explanation
Indices: 5818770--5820808 Score: 2897
Period size: 879 Copynumber: 2.3 Consensus size: 876
5818760 TCACCGGAGG
* * * * *
5818770 GGTTGGGTTAGGCATACGGAGTTTATTTCCGGTCTAAGATTGGACCGTACCGAA-GGTTG-ATGC
1 GGTTGGCTTAGGCATACGGAGTTCATTACCAGTCTAAGATTGGACAG-ACC-AAGGGTTGCA-GC
* * * * *
5818833 AGCAGAATCGGTAGCACGTAGAGGGGGA-CCGGTCGATCCCCGGCTTG-AGCATCTCGCCCCTTT
63 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCA-CATCCCACCCCTTT
* * * * *
5818896 GGTCGGTTGAGTGCCTGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
127 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* *
5818961 CTAAGATTCGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGC
192 CTAAGA-TCGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * * * *
5819026 AATTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACTTGACTAGCAGCATTGGGGT
256 ATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTAACGAGCAGCATGGGGGT
* *
5819091 TCCGGTGATCTGGGCGGCCGGGGGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
321 TCCGGCGATCGGGGCGGCCGGGGGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * * *
5819156 CTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGAACTCACACGCCCTTAAAAAGCATTTGAG
386 CTTACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCAATTGAG
* * * *
5819221 ATTTTACAGGTTTGCTACCAGTAGCCATGAAAGTGTCTAAAATGGGGACACTTTTTTCAATTGGT
451 ATTTTACAGGTTTGCTACCAGTACCCATGAAAGTGTCTAAAATGGGGACACTCTTTTCAAATGGA
* * *
5819286 CACAAAATCTTGTACACTTCGATTTTTGAGCTGAATTTTTTTGTGCGTGCCAATAAAAATACAAG
516 CACAAAATCTTGTACACTTCGAATTTTGAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAG
**
5819351 GATCATGTCTACCAAGTTTGGGGCAAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGC
581 GATCACATCTACCAAGTTTGGGGCAAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGC
*
5819416 AAAAAGTTTCAAAAATCGTAAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGG
646 AAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
** *
5819481 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
711 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAACAGCATTGGCACGCAGAAATATAAAGA
* * * * * *
5819546 TGTGCCTAAGCCCACCTACGACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGTG
776 TGTGCCTAAACCCACATACCACCCTATCGATCCACGGCTAGCGCATCCCGTCTCTCTGGCCGATG
* * *
5819611 TAGTGCCCGCCCGCCCGCCTGTTTGCTCGTTTCATC
841 TAGTGCCCGCCCGCCCACCTGCTCGCTCGTTTCATC
* *
5819647 GGTTGGCCTAGGCATACGGAGTTCATTACCAGTCTAAGATTGGATTAGACCAAGGGTTGCAGCAG
1 GGTTGGCTTAGGCATACGGAGTTCATTACCAGTCTAAGATTGGA-CAGACCAAGGGTTGCAGCAG
* * * *
5819712 CAGGATCGACAGCACGCAGAGAGGGACCCGGCCGATCCCCGGCTTGCACATCCCACCCCTCTGGC
65 CAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCACATCCCACCCCTTTGGC
* * * ** * *
5819777 CGGCTGAGCACCCGCACACTCGTTCCGTGGGTTGACTTAGGCATACAAAGTTCGTTCCCAGTCAA
130 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* *
5819842 AGATCAGACCGGATCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
195 AGATC-GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* *
5819907 TTTCTTCGTCGGGCCACCATCGTCGGAGCATCGCCGGAGAACCTAACCGA-CGGCATGGGGGTTC
259 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTAA-CGAGCAGCATGGGGGTTC
* * *
5819971 CGGCGATCGGGGGGGCCGGGTGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCC
323 CGGCGATCGGGGCGGCCGGG-GGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * * **
5820036 TTACATTGGCCCCCTATCCCTCATCAAATCTTGAGAAGTCACACCCCCTTAAGTAGCAATTGAGA
387 TTACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCAATTGAGA
* * * *
5820101 TTTTACAGGTTTGCTACTAGTCCCCATTAAAGTGTCTGAAATGGGGACACTCTTTTCAAATGGAC
452 TTTTACAGGTTTGCTACCAGTACCCATGAAAGTGTCTAAAATGGGGACACTCTTTTCAAATGGAC
5820166 ACAAAATCTTGTACACTTCGAGATTTT-AGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAG
517 ACAAAATCTTGTACACTTCGA-ATTTTGAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAG
* * * * * * * *
5820230 GATCACATCTACCAAGTTTGTGGCCAAATCTCGTTCTGAAAAAATTTTAAAAAATCTCGAATCGT
581 GATCACATCTACCAAGTTTGGGGCAAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGC
* * *
5820295 AAAAAGTTTCAAAAATTGTGACAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
646 AAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
5820360 CTTAAGGGACCATTGTATGAATTTATAGGCCATAAAAACAGCATTGGCACGTAGAAATATAAAGA
711 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAACAGCATTGGCACGCAGAAATATAAAGA
*
5820425 TGTGCCTAAACCCACATACCACCCTATCGATCCATGGCTAGTC-CATCCCGTCTCTCTGGCCGAT
776 TGTGCCTAAACCCACATACCACCCTATCGATCCACGGCTAG-CGCATCCCGTCTCTCTGGCCGAT
5820489 GTAGTGCCCGCCCGCCCA-CTCGCTCGCTCGTTTCATC
840 GTAGTGCCCGCCCGCCCACCT-GCTCGCTCGTTTCATC
* ** *
5820526 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGACCAAGGGTTGCGGCAG
1 GGTTGGCTTAGGCATACGGAGTTCATTACCAGTCTAAGATTGGA-CAGACCAAGGGTTGCAGCAG
* * **
5820591 TAGGATCGGCAGCACGCAGAGGGGGACCCGGTAGATCCCCTTCTTGCACATCCCACCCCCCTTTG
65 CAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCACATCCCA--CCCCTTTG
* * *
5820656 GCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTAATTTAGGCATACGGAGTTCATTCCCAGTC
128 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * *
5820721 TAAGATTGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACA
193 TAAGA-TCGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
5820786 TTTTTCTTCGTCGGGGCACCATC
257 TTTTTCTTCGTCGGGGCACCATC
5820809 ACCGGAGGGG
Statistics
Matches: 1022, Mismatches: 126, Indels: 24
0.87 0.11 0.02
Matches are distributed among these distances:
876 2 0.00
877 74 0.07
878 217 0.21
879 581 0.57
880 5 0.00
881 142 0.14
882 1 0.00
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (876 bp):
GGTTGGCTTAGGCATACGGAGTTCATTACCAGTCTAAGATTGGACAGACCAAGGGTTGCAGCAGC
AGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCACATCCCACCCCTTTGGCC
GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
GATCGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
TCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTAACGAGCAGCATGGGGGTTCCGG
CGATCGGGGCGGCCGGGGGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAC
ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCAATTGAGATTTT
ACAGGTTTGCTACCAGTACCCATGAAAGTGTCTAAAATGGGGACACTCTTTTCAAATGGACACAA
AATCTTGTACACTTCGAATTTTGAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCA
CATCTACCAAGTTTGGGGCAAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCAAAAA
GTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
GGGACCATTGTATGAATTTACAAGCCATAAAAACAGCATTGGCACGCAGAAATATAAAGATGTGC
CTAAACCCACATACCACCCTATCGATCCACGGCTAGCGCATCCCGTCTCTCTGGCCGATGTAGTG
CCCGCCCGCCCACCTGCTCGCTCGTTTCATC
Found at i:5821025 original size:26 final size:26
Alignment explanation
Indices: 5820987--5821039 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5820977 GTTGACTTAG
*
5820987 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5821013 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5821039 G
1 G
5821040 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5824174 original size:885 final size:884
Alignment explanation
Indices: 5820901--5825783 Score: 5779
Period size: 885 Copynumber: 5.5 Consensus size: 884
5820891 TAGCACATAG
* * * * * * * * * *
5820901 AGGGGGACCCGATCGATCCTCGGCTTGAGCATCTCGCCCCTCTGGTCGGTTGAGCGCCTGCACGC
1 AGGGGGACCCG-CCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCAGCTGAGCGCCCGCACGC
* * *
5820966 TCGTTTTGTGGGTTGACTTAGGCATACGGTGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
65 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCC
** * * *
5821031 CAGTCTAAGATTGGACTGGACCGAGGGTTTCGGCAGCACATGCTGGGCTCGGGCATGTGCTAGTG
130 CAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTG
* * * * * * ** *
5821096 TCGCAATTTT-CTTCATCGGGGCGCCATCGTTGGAGCATCGCTGGAGAACTTGACTAGCAGCATT
195 CCGC-ATTTTACTTCGTCGGGGCACCATCGTCGGAGCATCGC-AGAGAACCTGACCGGCGGCATT
* *
5821160 GGGGTTCCGGTGATCTGGGGGGTCGGGGGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
258 AGGGTTCC-G-G--C-----GATCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
5821225 TGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGAAATCACACCCCCTTAAAGAGCAT
313 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * *
5821290 TTGAGATTTTACAGGTTTGCTACCAGTAGCCATGAAAGTGTCTAAAATGGGGACACTTTTTTCAA
378 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
5821355 ATGGTCACAAAATCTTGTACACTTCGATTTTTTTAGCTGAATTTTTTTGTGCGTGCCAATAAAAA
443 ATGGTCACAAAATCTTGTACACTTCGATTTTTTT-GCTGAATTTTTTTGTGCATGCCAAAAAAAA
* * * * *
5821420 TACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAAAATTTAAAAAAATCCCA
507 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCG
* * * *
5821485 AACCGCAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACTAGTCGTCTTGCCATGAAACTTCACG
572 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
5821550 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
637 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* * * * *
5821615 TGAAGATGTGCCTAAGCCCACCTACGACCCTATCGATCCACGACTTGCGCA-TCTCGTCTTTCTG
702 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATTC-CGTCTCTCTG
** *
5821679 GCCGGTGTAGTGCCCGCCCGCCCGCCTGTTTGCTCGTTTCATCGGTTGGCCTAGGCATACGGAGT
766 GCCGACGTAGTGCCCGCCCG--C-CC-----GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
* * * * * *
5821744 TCATTACC-AGTCTAAGATTGGATTAGACCAAGGGTTGCAGCAGCAGGATC-GACAGCACGCAG
823 TCATT-CCTAGTCTAAGATCGGATCAGACCGAGGGTTGCAACAGTAGGATCAG-CAGCACGCAA
* * * *
5821806 AGAGGGACCCGGCCGATCCCC-AGCTTGCACATCCCACCCCTCTGGCC-GACTGAGCACCTGCAC
1 AGGGGGACCC-GCCGATCCCCGA-CTTGCGCATCCCACCCCTCTGGCCAG-CTGAGCGCCCGCAC
* *
5821869 ACTTGTTTCGTGGGTTGACTTAGGCATAC--AG---------AG--T-----T-C---G----TT
63 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATT
* * * * *
5821908 CCCAGTCAAAGATCAGACCGGATCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
128 CCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGG
* * * * *
5821973 TGCTGCATTTTTCTTCGTCGGGCCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCAT
193 TGCCGCATTTTACTTCGTCGGGGCACCATCGTCGGAGCATCG-CAGAGAACCTGACCGGCGGCAT
*
5822038 T-GAGGTTCCGACGATCGGGGGGGCCGGGTGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
257 TAG-GGTTCCGGCGAT---------C-GG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
5822102 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAAGTCACACCCCCTT-AAGTA
310 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG-A
* * * **
5822166 GCATTTGAGTTTTTACAGGTTTGCTACTAGTCCCCATTAAAGTGTCTGAAATGGGGACA-TTCTT
374 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT-TT
** * * *
5822230 TTCAAATGGTCACAAAATCTTGTACACTTCGAGATTTTAGCTGAATATTTTTGTGCATGCCAAGA
438 TTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTTGCTGAATTTTTTTGTGCATGCCAAAA
* * * *
5822295 AAAATACAAGGATCACATCTACCAAGTTTGTGGCCAAATCTCGTTCTGAAAAAATTTTAAAAAAT
503 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT
** *
5822360 CTCGAACCGTAAAAAGTTTCAAAAATTGTGACAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
568 CTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
5822425 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCATGTAGA
633 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* * * ** * *
5822490 AATATTAAGATGTACCTAAACCCACCTACCACCCTCTCGATCCACAACTCGTGCATCCCGTCTCT
698 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATTCCGTCTCT
* * * * * *
5822555 CTGGCCGGCATGGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGTATACAG
763 CTGGCC-G-A-CGT---AG--TGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
* * * * * *
5822620 AGTTCATTCATAGTCTAAGATTGGACCAGACCAAGGGTTGCGAA-AGCAGGATCGGCAGCACGCA
820 AGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTGC-AACAGTAGGATCAGCAGCACGCA
5822684 GA
884 -A
* *
5822686 A-GGGGACCCGACCGAT-CCCTAGCTTGCGCATCCCGCCCCTCTGGCCAGCTGA--GCCCGCACG
1 AGGGGGACCCG-CCGATCCCCGA-CTTGCGCATCCCACCCCTCTGGCCAGCTGAGCGCCCGCACG
* ** * * *
5822747 GTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCAAAGTCTAGGCACACGGAGTTCATTC
64 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTC
* ** *
5822812 CCAGTGTAAGATTGGACTGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCAGGCATGTGCTGGT
129 CCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGT
* * ** * * * * * *
5822877 GCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGTATCGCCGTAGAACCTAACTGACAGCATT
194 GCCGCATTTTACTTCGTCGGGGCACCATCGTCGGAGCATCGCAG-AGAACCTGACCGGCGGCATT
*
5822942 AGGGTTCCGACGATCGGGGGGCCCGGGGGGCGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
258 AGGGTTCCGGCGAT---------C-GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
5823007 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
312 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * *
5823072 TTTGAGATTTTACAGGTTTGGTGCCAGTAGCCATTAAAGTATCTAAAATGGGGACACTTTTTTCA
377 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * *
5823137 AATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTT-TTCATGCCAAAAAAAA
442 AATGGTCACAAAATCTTGTACACTTCGATTTTTTTGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* *
5823201 TACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAATATCTC-
507 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCG
* * * *
5823265 AAGCCGCAAAACGTTTCGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCAC
572 AA-CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
*
5823330 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
636 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
5823395 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATTCCGTCTCTCTG
701 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATTCCGTCTCTCTG
* * * *
5823460 GCTGACGTAGTGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAAGGAGGTCATTCCT
766 GCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCT
* * * * * *
5823525 AGTCCAAGATCGGATCAGACCGAGGGTTACAATAGTTGGATCAGTAGCACACAA
831 AGTCTAAGATCGGATCAGACCGAGGGTTGCAACAGTAGGATCAGCAGCACGCAA
* *
5823579 AGGGGGACCCAGCCGATCCCCGACTTGCGCATCCCACCCTTCTGGCCAGCTGAGCGCCCGAACGC
1 AGGGGGACCC-GCCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCAGCTGAGCGCCCGCACGC
*
5823644 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCC
65 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCC
* *
5823709 CAGTCTAAGATCAGACTGGACGGAGGGTTGCGGCAGCACATGCTGGGCTCAGCCATGTGCTGGTG
130 CAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTG
* * *
5823774 CCGCAGTTTTACTTTGTCGGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACCGGTGGCATT
195 CCGCA-TTTTACTTCGTCGGGGCACCATCGTCGGAGCATCG-CAGAGAACCTGACCGGCGGCATT
* * * *
5823839 AGGGTTCCGGCGATC-GGGGGTGTGCGCACATTATTTGTGATGGGTGGTGGTACTTGGCCCTTAT
258 AGGGTTCCGGCGATCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
5823903 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA-CATTTGAGATTTT
323 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
*
5823967 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TCGAAATGGGGACACTTTTTTCAAATGGTCGCA
388 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACA
* * * *
5824031 AAATCGTGTATACTTCGATTTTTTTGATGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
452 AAATCTTGTACACTTCGATTTTTTTGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
* *
5824096 ACGTCTACAAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGATCCGTAAAA
517 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAA
* * *
5824161 AGTTTTAAAAATCATGAAAGATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTA
582 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* *
5824226 AGGGACCATTGTACGAATTTATAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTG
647 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTG
*
5824291 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATTCCGTCTCTCTGGCTGACGTAGT
712 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATTCCGTCTCTCTGGCCGACGTAGT
* *
5824356 GCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGGTCATTCCTAGTCTAAGATC
777 GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC
* * * *
5824421 AGATCAGACCGAGGGTTGCAATAGTCGGATCAGCAGCACACAA
842 GGATCAGACCGAGGGTTGCAACAGTAGGATCAGCAGCACGCAA
* * * *
5824464 AGGGGGACCCAGCCAATCCCCGACTTGCACATCCCACCCTTCTGGCCAGCTGAGCGCCCGAACGC
1 AGGGGGACCC-GCCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCAGCTGAGCGCCCGCACGC
*
5824529 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCC
65 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCC
** * * *
5824594 CAGTCTAAGATCAGACTGGATTGAGGGTTGCAGCAGCAAATGCTGGGCTCAGCCATGTGCTGGTG
130 CAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTG
* * * *
5824659 CCGCAGTTTTACTTTGTGGGGGCACCATCGCCGGAGCATCGTCAGAGAACCTGACCGGTGGCATT
195 CCGCA-TTTTACTTCGTCGGGGCACCATCGTCGGAGCATCG-CAGAGAACCTGACCGGCGGCATT
* * * *
5824724 AGGGTTCCGGCAATC-GGGGGTGTGCGCACATTATTTGCGATGGGTGGTGGTACTTGGCCCTTAT
258 AGGGTTCCGGCGATCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
5824788 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA-CATTTGAGATTTT
323 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
*
5824852 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TCGAAATGGGGACACTTTTTTCAAATGGTCGCA
388 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACA
* * * * *
5824916 AAATCGTGTATACTTCGATTTTTTTGATGAATTTTTTTATGCATTCCAAAAAAAATACAAGGATC
452 AAATCTTGTACACTTCGATTTTTTTGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
** * **
5824981 ACGTCTATGAAGTTTGGGGCCAAAACTCCTCCTGAAAAAATTTTAAAAAATCTCGATTCGTAAAA
517 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAA
* *
5825046 AGTGTCAAAAATCATGAAAGATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
582 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* * **
5825111 AGGGACCATTGCAAGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTG
647 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTG
* ** * *
5825176 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCACCCCGTCTCCCTGGCCGGCGTAGT
712 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATTCCGTCTCTCTGGCCGACGTAGT
* *
5825241 GCCCGCCCGTCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
777 ----G--C--CCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGT
** * * * * * * *
5825306 CTAAGATCAAACCAGACTGAGGGTTACAGCAGTCA-GATCGGTAGCACGCCA
834 CTAAGATCGGATCAGACCGAGGGTTGCAACAGT-AGGATCAGCAGCACGCAA
* * * * * * *
5825357 AGGGGGACCCGACCGATGCCTGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCACCCGCACGC
1 AGGGGGACCCG-CCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCAGCTGAGCGCCCGCACGC
* **
5825422 TCATTTTATGGGTTGACTTAGGCATAC---G---A-----AG--T-----T-C--A--T--TT-C
65 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCC
* * * *
5825461 CAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGGTTC-GAGCATGTGCTAGT
130 CAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAG-GCATGTGCTGGT
* * * * **
5825525 GCCGTA-TTT--TTC-T----------TCGCCGAAGCATCGTCAGAGAACCTGACCGACAACATT
194 GCCGCATTTTACTTCGTCGGGGCACCATCGTCGGAGCATCG-CAGAGAACCTGACCGGCGGCATT
* *
5825576 GGGGTTCCGGCGATCGGGAGGGCCGGGGGGTGCGCGTACATGATGTGCGATGGGTGCTGGTACTT
258 AGGGTTCCGGCGATC-----GG--GGGGTGTGCGC--ACATGATGTGCGATGGGTGCTGGTACTT
* ** * *
5825641 AGAACTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATA
314 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
5825706 TGAGATTTTACAGGTTAGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
379 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
5825771 TGGTCACAAAATC
444 TGGTCACAAAATC
5825784 ATGAAAAATA
Statistics
Matches: 3543, Mismatches: 334, Indels: 244
0.86 0.08 0.06
Matches are distributed among these distances:
852 46 0.01
858 1 0.00
860 10 0.00
862 82 0.02
863 78 0.02
864 1 0.00
865 3 0.00
866 1 0.00
867 59 0.02
868 2 0.00
870 3 0.00
872 1 0.00
874 1 0.00
875 2 0.00
877 32 0.01
878 12 0.00
879 502 0.14
880 189 0.05
881 4 0.00
882 4 0.00
883 2 0.00
884 105 0.03
885 1208 0.34
886 6 0.00
887 11 0.00
888 3 0.00
889 1 0.00
890 2 0.00
891 1 0.00
892 2 0.00
893 171 0.05
894 130 0.04
895 5 0.00
896 132 0.04
897 57 0.02
898 2 0.00
899 3 0.00
900 1 0.00
901 3 0.00
902 255 0.07
903 329 0.09
904 7 0.00
905 73 0.02
906 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (884 bp):
AGGGGGACCCGCCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCAGCTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCC
AGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGC
CGCATTTTACTTCGTCGGGGCACCATCGTCGGAGCATCGCAGAGAACCTGACCGGCGGCATTAGG
GTTCCGGCGATCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGATTTTTTTGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGT
CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTT
TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
AACCCACCTACCACCCTATCGATCCACGGCTTGTGCATTCCGTCTCTCTGGCCGACGTAGTGCCC
GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGAT
CAGACCGAGGGTTGCAACAGTAGGATCAGCAGCACGCAA
Found at i:5824587 original size:26 final size:26
Alignment explanation
Indices: 5824550--5824602 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5824540 GTTGACTTAG
*
5824550 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5824576 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5824602 G
1 G
5824603 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5826196 original size:26 final size:26
Alignment explanation
Indices: 5826167--5826219 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5826157 GTTGACTTAG
5826167 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5826193 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5826219 G
1 G
5826220 ATCAGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5828506 original size:26 final size:26
Alignment explanation
Indices: 5828477--5828529 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5828467 GTTGACTTAG
5828477 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5828503 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5828529 G
1 G
5828530 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5828832 original size:899 final size:894
Alignment explanation
Indices: 5826715--5829265 Score: 3647
Period size: 899 Copynumber: 2.9 Consensus size: 894
5826705 GTTGGCTTAG
* * * * *
5826715 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCAAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATTCTGGG
* * *
5826780 CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCA-T-C--A-C-T-G--GAGAAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATTCCGGAGCATCGCAGAGAAC
* * ** *
5826836 CTGACCGGCGGCA-TTGGGGTTCTGACGATCGGGGGGGCCGTGGGGGGTGTGCGTACATGATGTG
131 TTGACCGGCGGCATTTGGGTTTC-GGTGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTG
* *
5826900 TGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAACTCAC
*
5826965 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* *
5827030 GGGGATACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
5827094 TGCATGCCAACAAAAATACAAGGATCACGTCTA-AAACGTTTGGGGCCAAAACACCTTCCGAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACAAA-GTTTGGGGCCAAAACTCCTTTCGAAAA
* * *
5827158 AATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAAAAGAAAATGAGTCGTCT
451 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATG-AAAATAGAAAATGAGTCGTCT
* *
5827223 TGCCATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
5827288 ATTGGCACGTAGAAATATGAAGATGGGCCTAAATCGACCTACCACCAC-ATCGATCCACGACCTG
580 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC-CTATCGATCCATGGCTTG
* * * * *
5827352 CGCATCCCGTCTCTCTGGCCGACGCAGTGGCCGCCCGTCCGTCCGCTCGTTTCATCGGTTCGCTT
644 CGCATCCCGTCTCTCTGGCCGACGTAGT-GCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* **
5827417 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATTTG
708 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGG
* *
5827482 TAACACATAGAGGCAGACCCGGCTGATCCCCGGATTGCGCATCCTACCCCTCTGGCCGGCTGAGC
773 TAACACACAGAGGCAGACCCGGCTGATCCCCGGATTGCGCATCCCACCCCTCTGGCCGGCTGAGC
* * *
5827547 ACCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
838 ACCCGCACGCTCGTTTCAGGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * *
5827604 GCATACAAAGTTCACTCCCAGCCTAAGATCGCACCAGACCGAGGGTTGCGACAGCACATGT-TGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACAT-TCTGG
* * * * * * *
5827668 GCTCGGGCATGTGCTTGTGCCGCAATTTCCTTCCCCGAGGCACCATCGCCGGAGCAACGCCAGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCAT-TCCGGAGCATCG-CAGAG
* * * *
5827733 AACTTGACCGGTGGCGTTAGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
128 AACTTGACCGGCGGCATTTGGGTTTCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
5827798 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCACATCAAACCTCGAGAA-TCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCCCTCATCAAACCTCGAGAACTCAC
5827862 ACCCCCTTAAAGAGCATTTGAAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTAAAA
257 ACCCCCTTAAAGAGCATTTG-AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
5827926 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTCGAGTTTTTAGCTGAATTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTT
* * *
5827991 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACAAAGTTTGGGACAAAAACTCCTTTCGAAA
385 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTTCGAAA
* ** * *
5828056 AAATTTTAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATCGTGAAATATAGAAAAAGAGTCGTC
450 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAA-ATAGAAAATGAGTCGTC
* ** *
5828121 TTGCCATGAAACTTCACGTGAAGGCTCAAGGGACCATTGTATGAATTTACAAGAGATAAAACTGG
514 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
5828186 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTA
579 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
* *
5828251 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTT
644 CGCATCCCGTCTCTCTGGCCGACGTAGTG-CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * *
5828316 AGGCATACGAACTTCATTCCCAGTCTAAGATCGGTCCAGACCGAGGGTTGCTGCAGCAGGATCGG
708 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGG
* * * * * *
5828381 TAGCACACAGAGG-GGCACCCAG-TCGATCCCCGGCTTGCGCATCCCGCCCTTCTGGCCGGCTGA
773 TAACACACAGAGGCAG-ACCCGGCT-GATCCCCGGATTGCGCATCCCACCCCTCTGGCCGGCTGA
5828444 GCACCCGCACGCTCGTTTCAGGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 GCACCCGCACGCTCGTTTCAGGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *** *
5828503 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCACATTCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATTCTGGG
* * *
5828568 CTCTGGCATGTCCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATTACCGGAGCATCGTCATAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATT-CCGGAGCATCG-CAGAGA
* * *
5828633 ACTTGACCGACGACATTTGGGTTTCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATTTGC
129 ACTTGACCGGCGGCATTTGGGTTTCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
5828698 GAT-AGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
5828762 CCCCCTTAAAGAGCATTTGTGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAACG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
* *
5828827 GGGACACTTTTTTTAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
5828892 GCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
* *
5828956 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAATAGAAAATGAGTCATCTTGC
453 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAATAGAAAATGAGTCGTCTTGC
* * *
5829021 CATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATTAATCTACAAGCCATAAAAATGGCATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * **
5829086 GGCACATAGAAATATGAAGATATGATTAAACCCACCTACCACCCTATCGA-CCAATGGCTTGCGC
583 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC-ATGGCTTGCGC
* * * *
5829150 ATCCCGTCTCTCTGGCCTACGTAGT---TCCCGCTCGCCCGCTCGTTTCGTTGGTTGGCTTAGGC
647 ATCCCGTCTCTCTGGCCGACGTAGTGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
*
5829212 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCA
712 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
5829266 CATGCTGGGC
Statistics
Matches: 1472, Mismatches: 161, Indels: 55
0.87 0.10 0.03
Matches are distributed among these distances:
889 89 0.06
892 82 0.06
894 1 0.00
895 3 0.00
896 155 0.11
897 177 0.12
898 224 0.15
899 702 0.48
900 33 0.02
901 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATTCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATTCCGGAGCATCGCAGAGAAC
TTGACCGGCGGCATTTGGGTTTCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTT
TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAATAGAAAATGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCC
CGTCTCTCTGGCCGACGTAGTGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAACACAC
AGAGGCAGACCCGGCTGATCCCCGGATTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCAC
GCTCGTTTCAGGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5829854 original size:697 final size:702
Alignment explanation
Indices: 5828503--5829955 Score: 2181
Period size: 697 Copynumber: 2.1 Consensus size: 702
5828493 CCCAGTCTAA
* ** *
5828503 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCACATTCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
* * *
5828568 CTCTGGCATGTCCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATTACCGGAGCATCGTCATAGA
66 CTCGGGCATGTCCTGGTGCCACATTTTTCTTCGCCGGGGCACCATTA-C-GAGCA-CG--AGAGA
* * ** *
5828633 ACTTGACCGACGACATTTGGGTTTCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATTTGC
126 ACCTGACCGACGACATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
5828698 GATAGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
191 GATAGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
5828763 CCCCTTAAAGAGCATTTGTGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAACGG
256 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAACGG
*
5828828 GGACACTTTTTTTAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
321 GGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
5828893 CATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATT
386 CATGCCAAAAAAATACAAGGATCACATCTACAAAGTTTGGGGACAAAACTCCTTTCGAAAAAATT
* *
5828958 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAATAGAAAATGAGTCATCTTGCCA
451 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATCAAAATAGAAAACGAGTCATCTTGCCA
* * *
5829023 TGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATTAATCTACAAGCCATAAAAATGGCATTGG
516 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATCTACAAGACATAAAAATGGCATTGG
* * * *
5829088 CACATAGAAATATGAAGATATGATTAAACCCACCTACCACCCTATCGACCAATGGCTTGCGCATC
581 CACATAAAAACATGAAGATATGACTAAACCCACCTACCACCCTATCGACCAATGGCTTACGCATC
* * * * *
5829153 CCGTCTCTCTGGCCTACGTAGTTCCCGCTCGCCCGCTCGTTTCGTTGGTTGGCTTAG
646 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
* *
5829210 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
* * *
5829275 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCA-T-C-A-C-CG-GAGAACCTG
66 CTCGGGCATGTCCTGGTGCCACATTTTTCTTCGCCGGGGCACCATTACGAGCACGAGAGAACCTG
* *
5829334 ACCGGCGGCATTGGGG-TTCTGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
131 ACCGACGACATTGGGGTTTC-GACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT-
*
5829397 GGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
194 AGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
5829462 CTTAAAGAGCATTTGAGATTTTACA-GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
259 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAACGGGGA
* *
5829526 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTTTTGCA
324 CACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTTGTGCA
5829591 TGCCAACAAAAATACAAGGATCACATCTACAAAGTTT-GGGACAAAATCTCCTTTCGAAAAAATT
388 TGCCAA-AAAAATACAAGGATCACATCTACAAAGTTTGGGGACAAAA-CTCCTTTCGAAAAAATT
* * *
5829655 TTAAAAAATCTTGAACCGTAAAAA-TTTTAAAAATCGTCAAATATAGAAAACGAGTCATCTTGCC
451 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATCAAA-ATAGAAAACGAGTCATCTTGCC
* * *
5829719 ATGACACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAGATAAAAATGGCATTG
515 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATCTACAAGACATAAAAATGGCATTG
** * * * *
5829784 GCATGTAAAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGATGGCTTACGCAT
580 GCACATAAAAACATGAAGATATGACTAAACCCACCTACCACCCTATCGACCAATGGCTTACGCAT
*
5829849 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
645 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
* * * *
5829907 GCATACGGACTTCATTCCCAGTCTAAGGTCGGTCCAGACCGAGGGTTGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC
5829956 CATAGCAGGA
Statistics
Matches: 678, Mismatches: 62, Indels: 22
0.89 0.08 0.03
Matches are distributed among these distances:
695 123 0.18
696 152 0.22
697 299 0.44
699 2 0.00
701 1 0.00
702 1 0.00
704 1 0.00
706 1 0.00
707 98 0.14
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (702 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
CTCGGGCATGTCCTGGTGCCACATTTTTCTTCGCCGGGGCACCATTACGAGCACGAGAGAACCTG
ACCGACGACATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATAG
TGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAACGGGGACA
CTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAAAAAAATACAAGGATCACATCTACAAAGTTTGGGGACAAAACTCCTTTCGAAAAAATTTTAAA
AAATCTCGAACCGTAAAAAGTTTCAAAAATCATCAAAATAGAAAACGAGTCATCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATCTACAAGACATAAAAATGGCATTGGCACAT
AAAAACATGAAGATATGACTAAACCCACCTACCACCCTATCGACCAATGGCTTACGCATCCCGTC
TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
Found at i:5830095 original size:26 final size:26
Alignment explanation
Indices: 5830065--5830115 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
5830055 GTTGACTTAG
5830065 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5830091 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
5830116 GGATCGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5830552 original size:892 final size:881
Alignment explanation
Indices: 5829210--5830830 Score: 2575
Period size: 892 Copynumber: 1.8 Consensus size: 881
5829200 GTTGGCTTAG
5829210 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* *
5829275 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGGC
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGGC
* * *
5829340 GGCATTGGGGTTCTGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCAGG
131 GACATTGCGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCAGG
5829405 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
196 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
5829470 GCATTTGAGATTTTACAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
261 GCATTTGAGATTTTACAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
5829535 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTTTTGCATGCCAACAA
326 CAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTTGTGCATGCCAACAA
*
5829600 AAATACAAGGATCACATCTACAAAGTTTGGGACAAAATCTCCTTTCGAAAAAATTTTAAAAAATC
391 AAATACAAGGATCACATCTACAAAGTTTGGGACAAAATCTCCTTCCGAAAAAATTTTAAAAAATC
* * * * *
5829665 TTGAACCGTAAAAATTTTAAAAATCGTCAAATATAGAAAACGAGTCATCTTGCCATGACACTTCA
456 TAGAACCGTAAAAATTTCAAAAATCATCAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
* *
5829730 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAGATAAAAATGGCATTGGCATGTAAAAA
521 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCACGTAAAAA
* * * * * *
5829795 CATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGATGGCTTACGCATCCCGTCTCTCT
586 CATGAAGATATGACTAAACCCACCTACCACCCTATCGACCAACGGCTTACGCATCCCATCTCTCT
5829860 GGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGACTTCATTCC
651 GGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGACTTCATTCC
*
5829925 CAGTCTAAGGTCGGTCCAGACCGAGGGTTGCCATAGCAGGATCGGTAGCACACAGAGGGGCACCC
716 CAGTCTAAGATCGGTCCAGACCGAGGGTTGCCATAGCAGGATCGGTAGCACACAGAGGGGCACCC
5829990 AGTCGATCCTCAGCTTGCGCATCCAGCCTTTCTGGCCGGCTGAGCGCCGCACGTTCGTTTCATGG
781 AGTCGATCCTCAGCTTGCGCATCCAGCCTTTCTGGCCGGCTGAGCGCCGCACGTTCGTTTCATGG
5830055 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
846 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
5830091 GCATATGGAGTTCATTCCCAGTCTAGGATCGGATTGGA-CAGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCA-AGGGTTGCGGCAGCACATGCTGG
*
5830155 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAG
65 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT--------CA-C--CGGAG
** *
5830220 AACCTGACCGGCGACATTGCGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATTTG
119 AACCTGACCGGCGACATTGCGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
5830285 CGAT-GGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCAC
183 CGATGGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
5830349 ACCCCCTTAAAGAGCATTTGTGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAAT
248 ACCCCCTTAAAGAGCATTTGAGATTTTACA-GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
5830414 GGGGACACTTTTTTTAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTT
312 GGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTT
* * * *
5830478 GTGCATGCCATCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-CTCCTTCCGAAA
377 GTGCATGCCAACAAAAATACAAGGATCACATCTACAAAGTTT-GGGACAAAATCTCCTTCCGAAA
* *
5830542 AAATTTTAAAAAATCTAGAACCGTAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
441 AAATTTTAAAAAATCTAGAACCGTAAAAATTTCAAAAATCATCAAAAATAGAAAACGAGTCATCT
* * *
5830607 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATTAATTTACAAGCCATAAAAATGGC
506 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGC
* * * * *
5830672 ATTGGCACGTAGAAATATGAAGATATGATTAAACCCACCTACCACGCTATCGACCAACGGCTTGC
571 ATTGGCACGTAAAAACATGAAGATATGACTAAACCCACCTACCACCCTATCGACCAACGGCTTAC
* * * * * *
5830737 GCATCCCATCTCTCTGGCCTGCGTAGTTCCCGCTCGTCCGCTCGTTTCGTTGGTTGGCTTAGGCA
636 GCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCA
*
5830802 TACGGAGTTCATTCCCAGTCTAAGATCGG
701 TACGGACTTCATTCCCAGTCTAAGATCGG
5830831 ACTGGACCAA
Statistics
Matches: 669, Mismatches: 56, Indels: 19
0.90 0.08 0.03
Matches are distributed among these distances:
880 2 0.00
881 100 0.15
889 2 0.00
890 1 0.00
892 436 0.65
893 128 0.19
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (881 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGAACCTGACCGGC
GACATTGCGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCAGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACATCTACAAAGTTTGGGACAAAATCTCCTTCCGAAAAAATTTTAAAAAATC
TAGAACCGTAAAAATTTCAAAAATCATCAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCACGTAAAAA
CATGAAGATATGACTAAACCCACCTACCACCCTATCGACCAACGGCTTACGCATCCCATCTCTCT
GGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGACTTCATTCC
CAGTCTAAGATCGGTCCAGACCGAGGGTTGCCATAGCAGGATCGGTAGCACACAGAGGGGCACCC
AGTCGATCCTCAGCTTGCGCATCCAGCCTTTCTGGCCGGCTGAGCGCCGCACGTTCGTTTCATGG
GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:5831445 original size:694 final size:702
Alignment explanation
Indices: 5830091--5831545 Score: 2127
Period size: 694 Copynumber: 2.1 Consensus size: 702
5830081 CCCAGTCTAA
* * *
5830091 GCATATGGAGTTCATTCCCAGTCTAGGATCGGATTGGA-CAGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCA-AGGGTTGCGGCAGCACATGCTGG
*
5830155 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAG
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCAT---C----CATCG-CGGAG
* ** *
5830220 AACCTGACCGGCGACATTGCGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATTTG
122 AACCTGACCGGCGACACTGCGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
5830285 CGATGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACA
187 CGATGGTGCAGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* ** *
5830350 CCCCCTTAAAGAGCATTTGTGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATG
252 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATG
*
5830415 GGGACACTTTTTTTAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
317 GGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
5830480 GCATGCCATCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
382 GCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACACCTTCCGAAAAAA
*
5830545 TTTTAAAAAATCTAGAACCGTAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGC
447 TTTTAAAAAATCTAGAACCGAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGC
* * *
5830610 CATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATTAATTTACAAGCCATAAAAATGGCATT
512 CATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
5830675 GGCACGTAGAAATATGAAGATATGATTAAACCCACCTACCACGCTATCGACCAACGGCTTGCGCA
577 GGCACGTAGAAATATGAAGATAGGACTAAACCCACCTACCACGCTATCGACCAACGGCCTGCGCA
* * * *
5830740 TCCCATCTCTCTGGCCTG-CGTAGT-T-CCCGCTCGTCCGCTCGTTTCGT-TGGTTGGCTTAG
642 TCCCATCTCTCTGGCC-GACGCAGTCTGCCCGCCCGTCCGCTCGTTTCATCT-GTTCGCTTAG
*
5830799 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGCAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGCACATGCTGGG
*
5830864 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCAGGGCACCAT-CA-C-CGGAGAACCTGACC
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCCATCGCGGAGAACCTGACC
* * *
5830926 GGCGGCACTGGGGTTCTGACGATC-GGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGT
131 GGCGACACTGCGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGAT-GGT
5830990 GCAGGTACTTGG-CCTTATATTGG-CCCCTAT-CCTCCATCAAACCT-GAGAACTCACA-CCCCT
194 GCAGGTACTTGGCCCTTATATTGGTCCCCTATCCCT-CATCAAACCTCGAGAACTCACACCCCCT
5831050 TAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
258 TAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
* * *
5831115 CTTTTTTCAAATGGTCTCAAAATCTTGTACCCTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGC
323 CTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
5831179 CAACAAAAATACAAGGATCACGTCTA-AAACGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTA
388 CAACAAAAATACAAGGATCACGTCTACAAA-GTTTGGGGCCAAAACACCTTCCGAAAAAATTTTA
* * * *
5831243 AAAAATCTCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATG
452 AAAAATCTAGAACCG-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATG
*
5831308 AAGCTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
516 AAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
5831373 CGTAGAAATATGAAGATGGGCCTAAACCGACCTACCAC-CATATCGATCC-ACGGCCTGCGTATC
581 CGTAGAAATATGAAGATAGGACTAAACCCACCTACCACGC-TATCGA-CCAACGGCCTGCGCATC
* *
5831436 CCGTCTCTCTGGCCGACGCAGTGCCTGCCCGCCCGTTCGCTCGTTTCATCTGTTCGCTTAG
644 CCATCTCTCTGGCCGACGCAGT--CTGCCCGCCCGTCCGCTCGTTTCATCTGTTCGCTTAG
* * * ** *
5831497 GCATACAGAGTTCATTCTCAGTCTAAGATTGGACCAGACCGAGGGTTGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGC
5831546 AGCAATAGGA
Statistics
Matches: 680, Mismatches: 53, Indels: 38
0.88 0.07 0.05
Matches are distributed among these distances:
692 2 0.00
693 87 0.13
694 288 0.42
695 16 0.02
696 26 0.04
697 69 0.10
698 85 0.12
699 2 0.00
700 2 0.00
708 101 0.15
709 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (702 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCCATCGCGGAGAACCTGACC
GGCGACACTGCGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGTGC
AGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
TTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAA
ATCTAGAACCGAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
TCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
AAATATGAAGATAGGACTAAACCCACCTACCACGCTATCGACCAACGGCCTGCGCATCCCATCTC
TCTGGCCGACGCAGTCTGCCCGCCCGTCCGCTCGTTTCATCTGTTCGCTTAG
Found at i:5833945 original size:26 final size:26
Alignment explanation
Indices: 5833893--5833945 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5833883 GTTAACTTAG
*
5833893 GCATACGGAGTTCATTCCCAATGTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
5833919 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5833945 G
1 G
5833946 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5836558 original size:760 final size:759
Alignment explanation
Indices: 5834339--5836635 Score: 2860
Period size: 777 Copynumber: 3.0 Consensus size: 759
5834329 CAAAAATCAT
* *
5834339 GAAAGATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
1 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
5834404 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTACACCCACCTAC
66 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
5834469 CACCCTATCGATCCACGGCTT-CGGCATCTCGTCTCTCTAGCCGGCGTAGTACCCGCCCGCCCGC
131 CACCCTATCGATCCACGGCTTGC-GCATCCCGTCTCTCTAGCTGGCGTAGTA----CCCGCCCGC
5834533 CCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGATC-
191 CCG-CCGCTCG---G-TTCGTCGGTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCA
* * * ** * * *
5834596 GAACCGGACCGAGGGTTGCGGCAGCCGGATCAGCAGCACGCCGAGAGGGACCCGACTGATCCCCG
250 G-ACAGGACCGAGGGTTGCGGCAGCAGGATCAACAGCACGTAGAGGGGGACCCGACCGATCCCTG
* * * * *
5834661 ACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGG
314 GCTTGCGCATCCCGCCCCTCTGGTCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * *
5834726 CATACGGAGTTCATTCCAAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGC
379 CATGCAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGGC
* * * * *
5834791 TCGGGCAAGTGCTGGTGCCGTATTTTTTTTCGTCGGGGCACCATCATCGGAGCATCGTCAGAGAA
444 TCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
* * * * *
5834856 CCTGACTGGCGGCATTGGGGTTCTG-GCAATCAGGGGGGCCGGGGGGGTGTGCACACATGATGTG
509 CCTGACCGACGGCATTGGGGTTCCGAG--ATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
5834920 CGATGGGTGCTGTTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
572 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
5834985 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAT
637 AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAT
* * *
5835050 GGGGACATTTTTTTCAAATGGTGATAAAATCTTGTACACTTCGAGTTTTAAAAGTCGT
702 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAAAGTCGG
* *
5835108 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCATG-GAAGGCTTAAGGGACCATTGTATG
1 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
5835172 AATTTACAAGCCATAAAAATGGTATTGGCACGTAGAAATATGAAGATGCGCCTAAACCCACCTAC
66 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * ** *
5835237 CGCCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTTTCTGGCATAGT----GCCCG--C-CC
131 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCTGGCGTAGTACCCGCCCGCCCGCC
* * * * * * *
5835295 GCTCGTTTCATCGGTTGGCTTAGGGATACGGAGTTCAATCCCAATCAAAGATCAGACTA-GACCG
196 GCTCGGTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGAC-AGGACCG
* * * * * * * *
5835359 AGGGTTACGGCAGCAAGATCAACAGCACGTAGAGGAGGACCCGATCAAT-CCTCAGCTTACACAT
260 AGGGTTGCGGCAGCAGGATCAACAGCACGTAGAGGGGGACCCGACCGATCCCT-GGCTTGCGCAT
** * * * ** * *
5835423 CCTACCCCTCTGGTCGACTGAA-TGCCCGTACATTCGTTTCATGGCTTGACTTAGGCATACGGAG
324 CCCGCCCCTCTGGTCGGCT-AAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-T-----TA--G-G
* * *
5835487 TTCATTTCTAGTCTAAGCTTATGGAGTTCATTCCCAGTCTAAGATCGGATCGAACTGAGGGTTAC
379 -------C-A---T--GC--A--GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTAC
* *
5835552 GACAGCACATGCTGCGCTCGGGCATGTGCTGGTGCCATATTTTTCCTCGTC-GGGCACCATCG-C
427 GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTC
* * * * * *
5835615 TGGAGCATTG-CTGGTGAACCAGGA-CGATGACATTGGGGTT-CTAGCAATCGGGGGGGCCGGGG
492 -GGAGCATCGTC-GGAGAACC-TGACCGACGGCATTGGGGTTCCGAG--ATCGGGGGGGCCGGGG
* * * *
5835677 GGGTGTGCGCACATGATGTGCGATGGGTGTTAGAACTTGGCCCTTATATTGGCCCCTTATCCCTC
552 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
5835742 ATCAAACATCGAGAACTCAC-ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGT
617 ATCAAACCTCGAGAACTCACAACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
5835806 AGCCATTAAAGTGTCTTAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
681 AGCCATTAAAGTGTCTTAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
5835871 GTTTTATAAA-TCGG
746 GTTTTA-AAAGTCGG
* *
5835885 GAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATG
1 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
5835950 AATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCAACTAC
66 AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
5836015 CACCCTATCGATCCACGG-TTGCGTATCCCATCTCTCTGGCTGGCGTAGTACCCGCCCGCCCGTC
131 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCTGGCGTAGTACCCGCCCGCCCG-C
* * **
5836079 CGCTCGGTTCGTCGGTCGCCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACAGGACTA
195 CGCTCGGTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACAGGACCG
** * * *
5836144 AGGGTTGTTGCTGCAGGATCAACAGCACGTAGAGGGGGACACGGCCGATCCCTGGCTTGCGCATC
260 AGGGTTGCGGCAGCAGGATCAACAGCACGTAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATC
*
5836209 CCGCCCCTCT-GCCTGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATGCAGAGT
325 CCGCCCCTCTGGTC-GGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATGCAGAGT
* * * * *
5836273 TCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTACGGCAGCACATGCCGGGCTCAGGCATGT
389 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGT
* *
5836338 GCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGAC
454 GCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGAC
* * *
5836403 GGCATTGGGGTTCCGATGATCGGGGGGGCCGAGGGGGTGTGTGCACATGATGTGCGATGGGTACT
519 GGCATTGGGGTTCCGA-GATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
5836468 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAA
583 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAA
* * *
5836533 GAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
648 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACATTTT
*
5836598 TTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTT
713 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
5836636 TAGCTGATTT
Statistics
Matches: 1300, Mismatches: 170, Indels: 125
0.82 0.11 0.08
Matches are distributed among these distances:
751 2 0.00
752 127 0.10
753 3 0.00
756 7 0.01
758 3 0.00
759 83 0.06
760 242 0.19
761 11 0.01
762 1 0.00
763 2 0.00
765 1 0.00
768 128 0.10
769 38 0.03
772 1 0.00
774 1 0.00
776 7 0.01
777 303 0.23
778 189 0.15
779 2 0.00
781 5 0.00
783 1 0.00
784 6 0.00
785 134 0.10
786 3 0.00
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (759 bp):
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCTGGCGTAGTACCCGCCCGCCCGCC
GCTCGGTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACAGGACCGA
GGGTTGCGGCAGCAGGATCAACAGCACGTAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCC
CGCCCCTCTGGTCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATGCAGAGTTC
ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGC
TGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGG
CATTGGGGTTCCGAGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACATTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAAAGTCGG
Found at i:5837167 original size:26 final size:26
Alignment explanation
Indices: 5837131--5837183 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5837121 GTTGACTTGG
*
5837131 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
*
5837157 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
5837183 G
1 G
5837184 AACAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:5837604 original size:24 final size:24
Alignment explanation
Indices: 5837559--5837606 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
5837549 CGCATCCCAT
*
5837559 CCCTCTGGCCGATGTAGTGCCCGC
1 CCCTCTGGCCGATGTAGCGCCCGC
5837583 CCCTCTGGCCGACTG-AGCGCCCGC
1 CCCTCTGGCCGA-TGTAGCGCCCGC
5837607 ACGCTCATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 20 0.91
25 2 0.09
ACGTcount: A:0.08, C:0.46, G:0.29, T:0.17
Consensus pattern (24 bp):
CCCTCTGGCCGATGTAGCGCCCGC
Found at i:5838585 original size:26 final size:26
Alignment explanation
Indices: 5838556--5838608 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5838546 GTTGATTTAG
5838556 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5838582 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5838608 G
1 G
5838609 ATTGGACTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5840401 original size:26 final size:26
Alignment explanation
Indices: 5840365--5840417 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5840355 GTTGACTTAG
*
5840365 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
5840391 GCATACGGAGTTCATTCGAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
5840417 G
1 G
5840418 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:5841292 original size:26 final size:26
Alignment explanation
Indices: 5841263--5841315 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5841253 GTTGACTTAG
*
5841263 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5841289 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5841315 G
1 G
5841316 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5841929 original size:899 final size:898
Alignment explanation
Indices: 5837578--5842041 Score: 6060
Period size: 899 Copynumber: 4.9 Consensus size: 898
5837568 CGATGTAGTG
* * * * *
5837578 CCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGAATTAGGCATACGAAGT
1 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * * *
5837643 TCATTCCCAGTCTAACCTTGCGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACG
66 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
* * * * * ** *
5837708 ACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACCTTTTTCTTTGCCGGGGCACCATCACCA
131 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG
* *
5837773 GAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCGGAAGGGTT
196 GAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCCGG-GGGGTG
* * *
5837838 TTCGCAAATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
259 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * * * *
5837903 ACCTCGAGAACTCACACCCCCTTAAGGAACATTTGAGATTTCACAGGTTTGCTGTCGGTAGCCAT
324 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
5837968 TAAAGTGTCTGAAACGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA--CTTT
389 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
*
5838031 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGACGTC
454 AGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGG---A----T--C----------ACGTC
* * *
5838096 TACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTT
500 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTT
** *
5838161 CAAAAATCGTGAAAAATAGAAAACGAGTTATCTTGCCATGAAACTTCACGTGAGGGCTTAAGGGA
565 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
5838226 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATTAAGATGTGCCTAA
630 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAA
* * * * *
5838291 ACCCACCTATCACCTTATCGATTCACGGCTTGCGC-TCCCGTCTCTCTGGCCGACGTAGTGCTCA
695 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTG----
* * *
5838355 CCCACCCGCCCGCCCACCTGCTCATTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTC
756 CCCGCCCGCCCG--C-CC-GCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTC
** ** ** * *
5838420 TAAGATCAAACCAGACTGAGGGTTGTGGCAGCAGGATCGGTACCATGCAGAGGGGGACCCGATCG
817 TAAGATCGGACCAGACCAAGGGTTGTGGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGACCG
* * **
5838485 ATCCTCGACTTATGCAT
882 ATCCCCGGCTTGCGCAT
* * * * ** * *
5838502 CCTGCCCCTCTGGTCGGCTGAGCACCCGTACGCTCGTTTTATGTGTTGATTTAGGCATACGGAGT
1 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * * *
5838567 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACTGAGGGCTACG
66 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
5838632 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG
131 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG
* * * * * *
5838697 GAGCTTCGTCGGAGAACCTGATCAATGGCATTGGGGTTCCGAAGAACAGGGGGGCCGGGAGGGGT
196 GAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-GG-GGGGT
* *
5838762 GTGCGCACATGATGTTCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCA
258 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
5838827 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAA
323 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * * *
5838892 TTAAAGTGTCTGAAGTGGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTTGAGTTTT
388 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * **
5838957 TAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGTATCACGTCTAAGAAGTTTGGGGCCAA
453 TAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * *
5839022 AACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGGTTT-GAAAATCGTGAAAAAT
518 AACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAA-GTTTCAAAAATCGTGAAAAAT
* *
5839086 AGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAAGAATTTAC
582 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*** * * *
5839151 AAGCCAT-AAAATGGCATTGGTGTAAAGAGATATGAAGACGTGCCTAAACCCACCTACCACCCTA
647 AAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * * *
5839215 TTGATCGACGGCATGCGCATCCCGTCTCTCTAGTCGGCGTAGTGCTCGCCCGCCCGCCCACTCGT
712 TCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCAT
* * * * *
5839280 TTCATCGGTTGGCTTAGGCACATGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
777 TTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTG
* *
5839345 TGGCAGCAGGATC-AGCAGCATGCAGAGGGGGACCCGACCGATCCCTGGCTTGCACAT
842 TGGCAGCAGGATCGA-CAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
* *
5839402 CTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
1 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* *
5839467 TCATTCCCAATC-AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTG
66 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
* * * * ** *
5839531 ACAGCATATGCTGGGCTTGGGCATGTGCTGGTGTCATATTTTTCTTCGTCGGGGCACTATCGTCG
131 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG
* *
5839596 GAGCATCGTCGGAGAACCTGACC-AGCGGCATTGGGGTTCCGGCGACCGGGGGGGCCGGGGGGTG
196 GAGCATCGTCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTG
* * * *
5839660 TGCGCACATGATGTGTGATTGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTTATCAA
259 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
** *
5839725 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAATTTGCTGCCAGTAGCCTT
324 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
5839790 TAAAGTGTCTAAAATGGGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTCGAGTTTTT
389 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * *
5839855 ACAAATGTCTG-AATTGCTTTGTGCATGCCAACAAAAATAAAAAGATCACGTCTACCAAGTTTGG
454 ----A-G-CTGAAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* *
5839919 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGA
512 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGA
* * * *
5839984 AAAATAGAAAACGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTATGCGTCCATTGTATGAA
577 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * *
5840049 TTTACAAGCAATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTATCA
642 TTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * *
5840114 CCCTATCGATCAACGGCTTGCGCATCTCGTCTCTCTAGCTGGCGTAGTGCCTGCCCTCCCGCCAA
707 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCG----
* * * * * * **
5840179 CCCGTTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCACTGCCAGTCTAAGATTGGATTAGAC
768 CCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * *
5840244 CAAGGGTTGTGGCAGCAAGATCGACAACATGCAGAGGGGGACCCAGGCCGATCCCCGGCTTGTGC
833 CAAGGGTTGTGGCAGCAGGATCGACAGCATGCAGAGGGGGACCC-GACCGATCCCCGGCTTGCGC
5840309 AT
897 AT
* * * *
5840311 CTCGCCCTTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
1 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
** * *
5840376 TCATTCCCAGTCTAAGCATACGGAGTTCATTCGAAGTCTAAGATTGGACCGGACCGAGGGTTGCG
66 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
* *
5840441 GCAGTACATTCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-TCCGGGGCACCATCGTC
131 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-CGGGGCACCATCGTC
* * * *
5840505 GGAGCATCGCCAGAGAACCTGACCGGCGGCAATGGGGTTCCGACGATCGGGGCGGCCGGGGGGTG
195 GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGCCGGGGGGTG
* * *
5840570 TGCGCACACGATGTGCGATGGGTGCCGGTACTTGGCCCTTAGCA-TGGCCCCCTATCCCTCATCA
259 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA-TATTGGCCCCCTATCCCTCATCA
* *
5840634 AACCAT-GAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCC
323 AACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
5840698 ATTGAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTT
387 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
5840762 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAACGATCACGTCTACGAAGTTTGGGGCCA
452 TTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * ** *
5840827 AAATTCCTTCCAAAAAAATTTTAAAAAATCTTGAACCACAAAAAGTTTCAAAAATCATGAAAAAT
517 AAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
* *
5840892 AGAAAACGAGTCGTCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTTC
582 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
5840957 AAGCCATAAAAATGGCTTTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
647 AAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
5841022 TCGATCCACGGCTTGCACATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGT
712 TCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCAT
* ** *
5841087 TTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTGTAAGATCGGACTGGACAAAGGGTTG
777 TTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTG
* * * * * ** *
5841152 TGGCAGTAGGATCGACAGCACGCAGAGGGTGTCCCGATCGATCCTTGGCTTGCGTAT
842 TGGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
* * * *
5841209 CCCGCCCCTTTGGCCAGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGT
1 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* *
5841274 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTG
66 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
* * *
5841339 GCAGCACATGCTGAGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATAGTCG
131 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG
** * * *
5841404 GAGCATCACCGGAGAACCTGACCGACGGCATTGGGTTTTCGGCGATCGGGGGGCCGAGGGGGTGT
196 GAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCG-GGGGGTGT
* * * *
5841469 GCACACACGATGTGCGATGGGTGCTGGTACTTAGCCATTATATTGGCCCCCTATCCCTCATCAAA
260 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * *
5841534 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTACCAGTAGGCATT
325 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
5841599 AAAGTGTCTGTAATGGGGAGACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
390 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
*
5841664 GCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAA
455 GCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * *
5841729 TTCCTTCCGAAAAACTTTTAAAAAATC-CCAAGCCGTAAAAAGTTTCAAAAATCGTGAAAAATAA
520 CTCCTTCCGAAAAAATTTTAAAAAATCTCGAA-CCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
* *
5841793 AAAACGAGTCATCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
584 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*
5841858 GCCATAAAAATGGCATTGGCACATAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATC
649 GCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * *
5841923 GATCCACGGCTTGCGCATCCTGTCTCTCTGGCAGACGTAGTGCCCGTCCGCCCGCCC-CTCATTT
714 GATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTT
* * *
5841987 CATCGGTTGGCTTAGGCATACGTAGTTCATTCCCAGTCTAAGATCGGATCAGACC
779 CGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACC
5842042 GGACCGAGGG
Statistics
Matches: 3134, Mismatches: 370, Indels: 98
0.87 0.10 0.03
Matches are distributed among these distances:
897 192 0.06
898 430 0.14
899 578 0.18
900 174 0.06
901 3 0.00
902 9 0.00
903 452 0.14
904 110 0.04
905 1 0.00
907 61 0.02
908 253 0.08
909 147 0.05
910 280 0.09
911 2 0.00
918 1 0.00
920 1 0.00
924 219 0.07
925 182 0.06
927 39 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (898 bp):
CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG
GAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTG
CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
CTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
TCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
CATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
TCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCG
TCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGC
AGCAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
Found at i:5845071 original size:902 final size:897
Alignment explanation
Indices: 5843802--5845954 Score: 3099
Period size: 903 Copynumber: 2.4 Consensus size: 897
5843792 TAGGCATACG
* *
5843802 GAGTTCATTCCCAGTCTAAGATCGGAACGGACCGAGGGTTGCGGCAGCACATGCTGGACTCGGGC
1 GAGTTCATTCCCAGTCTAAGATC-GAACAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* *
5843867 ATGTACTGGTGCTGCATTTTTCTTCATCGGGG-CACCATC---G--T---CGGAGAACCTGACCG
65 ATGTGCTGGTGCTGCATTTTTCTTCATCGGGGACATCATCAGAGCATCACCGGAGAACCTGACCG
* ** ** *
5843923 GCGGTATTGGGGTTCCGGCGAT-TAGGGGGTCGGGGGGTGTGCGCACATGATATGCGATTGGTGC
130 GCGGCATT-GGGTTCCGATGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGA-TGGTGC
* *
5843987 TGGCACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
193 TGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
* *
5844052 AAAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
258 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
** * * *
5844117 TTTTCAAA-TGATCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTGCATGCCA
323 TTTTCAAATTG-TCACAAAATCTTGTACACTTCAAGTTTTTAACGGAATTTTTTTGTGCATGCCA
* *
5844181 AAAAAAATACAAGGATCATGTTTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTT-TAAA
387 AAAAAAATACAAGGATCATGTGTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTAAAAA
* * **
5844245 AAAT-CTAAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAAAAAAT-AAGTCATCATGCCATG
452 AAATCCCAAAA-CGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAA-TCATCATGCCATG
5844308 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAGGCCATAAAAATGGCATTGGCA
515 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAGGCCATAAAAATGGCATTGGCA
5844373 TGCAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCAATCACGGCTTGCGCATCCCG
580 TGCAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCAATCACGGCTTGCGCATCCCG
* *
5844438 TCTCTCCGGCCGATGTAGTGCCCGCCCGCCCCCCTGCTCGCTCGTTTCGTCGGTTGGCTTAGGCA
645 TCTCTCCGGCCGACGTAGTGCCCGCCCGCCCCCCTGCTCGCTCGTTTCGTCGATTGGCTTAGGCA
* *
5844503 TACGGAGTTCATTCCTAGTCTAAGATCAGA-CTGAATCAAGGGTTATGGCAGCAAGATCGGCAGC
710 TACGGAGTTCATTCCCAGTCTAAGATCAGATC-GAATCAAGGGTTATGGCAGCAAGATCAGCAGC
* * * *
5844567 ACGCAGAGGGGGACAC-GG-TCAATCC-CTAGCTTGCACATCCCGCCCCTCTGGCTGGCTCAACG
774 ACGCAAAGGGGGAC-CTGGCT-AATCCTC-AGCTTGCACATCCCACCCCTCTGGCCGACTCAACG
* * * * *
5844629 CCCGTACGCTTGTTTCATTGGTTGACTTAGGCATAC-GAAGTTCATTTCCAGTCTAAGCATATA
836 CCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAAGCATA-A
* * * *
5844692 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGCC
1 GAGTTCATTCCCAGTCTAAGATC-GAACAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * *
5844757 ATGTGCTGGTGCCGTATTTTTCTTCATCGGGGTACGATCATCAGAGCATCACCAGAGAACCTGAC
65 ATGTGCTGGTGCTGCATTTTTCTTCATCGGGG-AC-ATCATCAGAGCATCACCGGAGAACCTGAC
** * *
5844822 CGGTAGCATTAGAGTACCGATGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGTT
128 CGGCGGCATT-GGGTTCCGATGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGG-T
* *
5844887 GCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAATCTCAAGAACTCACACCCCCTT
191 GCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
* * *
5844952 AAAGAGCATTTGAGATTTTACAAGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGATAC
256 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
5845017 TTTTTTCAAATTGTCACAAAATCTTGTACACTTCAATTTTTTAACGGTATTTTTTTGTGCATGCC
321 TTTTTTCAAATTGTCACAAAATCTTGTACACTTCAAGTTTTTAACGGAATTTTTTTGTGCATGCC
* *
5845082 AACAAAAATACAAGGATCATGTGTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAA
386 AAAAAAAATACAAGGATCATGTGTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTAAAA
* * * *
5845147 AAAATCCCGAAAGGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAATCGTCTTGCCATGA
451 AAAATCCCAAAACGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAATCATCATGCCATGA
5845212 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAGGCCATAAAAATGGCATTGGCAT
516 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAGGCCATAAAAATGGCATTGGCAT
5845277 GCAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCAATCACGGCTTGCGCATCCCGT
581 GCAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCAATCACGGCTTGCGCATCCCGT
*
5845342 CTCTCCGGCCGACGTAGTGCCCGCCCGCCCGCCTGCTCGCTCGTTTCGTCGATTGGCTTAGGCAT
646 CTCTCCGGCCGACGTAGTGCCCGCCCGCCCCCCTGCTCGCTCGTTTCGTCGATTGGCTTAGGCAT
* * *
5845407 ACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTATGGTAGCAGGATCAGCAGCAC
711 ACGGAGTTCATTCCCAGTCTAAGATCAGATCGAATCAAGGGTTATGGCAGCAAGATCAGCAGCAC
* * * * * *
5845472 GCAAAGGGGGACCTGGCTGATCCTCGGCTTGCGCATCCCATCCCTCTGGCCGACTGAGCGCCCGC
776 GCAAAGGGGGACCTGGCTAATCCTCAGCTTGCACATCCCACCCCTCTGGCCGACTCAACGCCCGC
* * *
5845537 ACACTCGTTTCGTGGGTTGACTTAGGCATGCAGAGTTCATTCCCAGTCTAAGCATAC
841 ACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAA
* *
5845594 GAAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGGTAGCACATGCTAGGCTCGGG
1 G-AGTTCATTCCCAGTCTAAGATCGAA-CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * *
5845659 CATGTGCTGGTGCTGGATTTTTCTTCGTCCGGGGCACCATCACCAGAGCATCACCGGAGAACCTG
64 CATGTGCTGGTGCTGCATTTTTCTTCAT-CGGGG-A-CATCATCAGAGCATCACCGGAGAACCTG
* *
5845724 ACCGGCGGCATTGGGATTCCAATGATCGGGGGGG-CTGGGGGGCTGTGCACACATGATGTGCGAT
126 ACCGGCGGCATTGGG-TTCCGATGATCGGGGGGGTC-GGGGGG-TGTGCGCACATGATGTGCGAT
* * * *
5845788 GGGTGCTGGTACCTGGCTCTTATATTGGCCCCCTTATCCCTCATCAAACCTTGAA-AACTCACAC
188 -GGTGCTGGTACTTGGCCCATATATTGGCCCCC-TATCCCTCATCAAACC-TCAAGAACTCACAC
*
5845852 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAAT-G
250 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
5845916 GGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTT
315 GGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTT
5845955 TTAATAACCG
Statistics
Matches: 1125, Mismatches: 106, Indels: 49
0.88 0.08 0.04
Matches are distributed among these distances:
890 87 0.08
892 1 0.00
893 5 0.00
896 1 0.00
898 1 0.00
901 31 0.03
902 271 0.24
903 481 0.43
904 73 0.06
905 85 0.08
906 86 0.08
907 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
GAGTTCATTCCCAGTCTAAGATCGAACAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCTGCATTTTTCTTCATCGGGGACATCATCAGAGCATCACCGGAGAACCTGACCGG
CGGCATTGGGTTCCGATGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGTGCTGG
TACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATTGTCACAAAATCTTGTACACTTCAAGTTTTTAACGGAATTTTTTTGTGCATGCCAAAAA
AAATACAAGGATCATGTGTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTAAAAAAAAT
CCCAAAACGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAATCATCATGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAGGCCATAAAAATGGCATTGGCATGCAGA
AATATGAAGATGTGCATAAACCCACCTACCACCCTATCAATCACGGCTTGCGCATCCCGTCTCTC
CGGCCGACGTAGTGCCCGCCCGCCCCCCTGCTCGCTCGTTTCGTCGATTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCAGATCGAATCAAGGGTTATGGCAGCAAGATCAGCAGCACGCAAA
GGGGGACCTGGCTAATCCTCAGCTTGCACATCCCACCCCTCTGGCCGACTCAACGCCCGCACACT
CGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAA
Found at i:5846799 original size:58 final size:58
Alignment explanation
Indices: 5846586--5847039 Score: 583
Period size: 57 Copynumber: 7.7 Consensus size: 58
5846576 TCTTGTGTAG
* *
5846586 GGAAAATTGATACTTTCAACTTTTTCCTAAAAATATTTTTTTG-AAATTTATTTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTTATTTTTAA
*
5846643 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTTATTTTTAA
* * *
5846700 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT-GAAAATTT-ATTTTTAA
* *
5846760 GGAAAATTAATACTTTCAACTTTTTCCTAAAAATA-TTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTTATTTTTAA
* * * * **
5846817 GGAAAATTGATACTTTCAACTTTTCCCCAAAATTTTTTTTTTAAAAATTTATTTCAAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTTATTTTTAA
* *
5846875 AGAAAATTGATACTTTCAACTTTT-CCTCAAAAATCCCTTTTTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAA------TATTTTTTTGAAAATTTATTTTTAA
* * ** * *
5846939 AGAAAATGGATACTTTCAACTTTTCCCTAAAAATATTTTTCAGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTT-ATTTTTAA
*
5846998 GGAAGATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT
5847040 TGGAACTTTT
Statistics
Matches: 347, Mismatches: 36, Indels: 26
0.85 0.09 0.06
Matches are distributed among these distances:
56 7 0.02
57 120 0.35
58 72 0.21
59 56 0.16
60 39 0.11
64 50 0.14
65 3 0.01
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.46
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTTATTTTTAA
Found at i:5846919 original size:65 final size:64
Alignment explanation
Indices: 5846795--5846972 Score: 208
Period size: 64 Copynumber: 2.9 Consensus size: 64
5846785 CCTAAAAATA
* ** * * *
5846795 TTTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCC-CAAAA-----TTTT
1 TTTTTTAAAAATTTATTTCAAAAGAAAATGGATACTTTCAACTTTTCCCTAAAAATCCCTTTTT
*
5846853 TTTTTTAAAAATTTATTTCAAAAGAAAATTGATACTTTCAACTTTT-CCTCAAAAATCCCTTTTT
1 TTTTTTAAAAATTTATTTCAAAAGAAAATGGATACTTTCAACTTTTCCCT-AAAAATCCCTTTTT
* **
5846917 TTTTTTGAAAATTTATTTTTAAAGAAAATGGATACTTTCAACTTTTCCCTAAAAAT
1 TTTTTTAAAAATTTATTTCAAAAGAAAATGGATACTTTCAACTTTTCCCTAAAAAT
5846973 ATTTTTCAGA
Statistics
Matches: 103, Mismatches: 9, Indels: 10
0.84 0.07 0.08
Matches are distributed among these distances:
57 2 0.02
58 42 0.41
59 4 0.04
64 52 0.50
65 3 0.03
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.46
Consensus pattern (64 bp):
TTTTTTAAAAATTTATTTCAAAAGAAAATGGATACTTTCAACTTTTCCCTAAAAATCCCTTTTT
Found at i:5847097 original size:16 final size:15
Alignment explanation
Indices: 5847077--5847139 Score: 63
Period size: 16 Copynumber: 3.9 Consensus size: 15
5847067 AATAGAATAA
5847077 TAAAAAAAATAAAAG
1 TAAAAAAAATAAAAG
* *
5847092 TGAAAATAAATAAAAA
1 T-AAAAAAAATAAAAG
*
5847108 TAAAAATAAAGAAAAG
1 TAAAAA-AAATAAAAG
5847124 TAAAACAAAAATAAAA
1 T-AAA-AAAAATAAAA
5847140 ATAAGATAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
15 5 0.13
16 21 0.55
17 10 0.26
18 2 0.05
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (15 bp):
TAAAAAAAATAAAAG
Found at i:5847108 original size:6 final size:6
Alignment explanation
Indices: 5847072--5847157 Score: 54
Period size: 6 Copynumber: 14.3 Consensus size: 6
5847062 AAGAAAATAG
* *
5847072 AATAATA AA-AAA AATAAA AGTGAA AAT--A AATAAA AATAAA AATAAA
1 AATAA-A AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
* * * *
5847118 GAAAAGTAA AACAAA AATAAA AAT-AA GATAAA GATAAA AA
1 -AATA--AA AATAAA AATAAA AATAAA AATAAA AATAAA AA
5847158 ATATTAAATA
Statistics
Matches: 64, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
4 4 0.06
5 7 0.11
6 43 0.67
7 5 0.08
8 3 0.05
9 2 0.03
ACGTcount: A:0.77, C:0.01, G:0.07, T:0.15
Consensus pattern (6 bp):
AATAAA
Found at i:5847133 original size:27 final size:28
Alignment explanation
Indices: 5847103--5847156 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
5847093 GAAAATAAAT
5847103 AAAAATAAAAATAAAGA-AAAG-TAAAAC
1 AAAAATAAAAAT-AAGATAAAGATAAAAC
5847130 AAAAATAAAAATAAGATAAAGATAAAA
1 AAAAATAAAAATAAGATAAAGATAAAA
5847157 AATATTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 4 0.16
27 16 0.64
28 5 0.20
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.13
Consensus pattern (28 bp):
AAAAATAAAAATAAGATAAAGATAAAAC
Found at i:5847148 original size:11 final size:11
Alignment explanation
Indices: 5847065--5847231 Score: 67
Period size: 11 Copynumber: 14.5 Consensus size: 11
5847055 TTATTTAAAG
*
5847065 AAAATAGAATA
1 AAAATAAAATA
*
5847076 ATAAAAAAAATA
1 A-AAATAAAATA
*
5847088 AAAGTGAAAATA
1 AAAAT-AAAATA
*
5847100 AATA-AAAATA
1 AAAATAAAATA
*
5847110 AAAAT-AAAGA
1 AAAATAAAATA
* *
5847120 AAAGTAAAACA
1 AAAATAAAATA
5847131 AAAATAAAA-A
1 AAAATAAAATA
*
5847141 TAAGATAAAGATAA
1 -AAAATAAA-AT-A
5847155 AAAATATTAAATA
1 AAAATA--AAATA
*
5847168 AAACCTAATCTAATA
1 AAA-ATAA---AATA
*
5847183 AATATAAAA-A
1 AAAATAAAATA
*
5847193 CAAATAAAATA
1 AAAATAAAATA
5847204 AAAA-ATAAATAA
1 AAAATA-AAAT-A
5847216 ACAAATAAAA-A
1 A-AAATAAAATA
5847227 AAAAT
1 AAAAT
5847232 TGGAGCGGCT
Statistics
Matches: 118, Mismatches: 19, Indels: 39
0.67 0.11 0.22
Matches are distributed among these distances:
10 31 0.26
11 34 0.29
12 21 0.18
13 15 0.13
14 9 0.08
15 8 0.07
ACGTcount: A:0.74, C:0.04, G:0.04, T:0.18
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:5847208 original size:16 final size:17
Alignment explanation
Indices: 5847182--5847231 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 17
5847172 CTAATCTAAT
5847182 AAATATAAAAACAAATA
1 AAATATAAAAACAAATA
*
5847199 AAATA-AAAAATAAATA
1 AAATATAAAAACAAATA
* *
5847215 AACAAATAAAAAAAAAT
1 AA-ATATAAAAACAAAT
5847232 TGGAGCGGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 12 0.43
17 7 0.25
18 9 0.32
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (17 bp):
AAATATAAAAACAAATA
Found at i:5847217 original size:24 final size:23
Alignment explanation
Indices: 5847182--5847230 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 23
5847172 CTAATCTAAT
5847182 AAATATAAAAACAAATAAAATAAA
1 AAATATAAAAACAAATAAAA-AAA
5847206 AAATA-AATAAACAAATAAAAAAA
1 AAATATAA-AAACAAATAAAAAAA
5847229 AA
1 AA
5847231 TTGGAGCGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
23 7 0.29
24 17 0.71
ACGTcount: A:0.82, C:0.04, G:0.00, T:0.14
Consensus pattern (23 bp):
AAATATAAAAACAAATAAAAAAA
Found at i:5848062 original size:20 final size:20
Alignment explanation
Indices: 5848039--5848077 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
5848029 TAAAAATCAA
5848039 ATAAATAAAAAAAATAATAG
1 ATAAATAAAAAAAATAATAG
* * *
5848059 ATAATTAGAAAAGATAATA
1 ATAAATAAAAAAAATAATA
5848078 AAAAAATATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (20 bp):
ATAAATAAAAAAAATAATAG
Found at i:5848141 original size:18 final size:17
Alignment explanation
Indices: 5848120--5848241 Score: 65
Period size: 18 Copynumber: 7.1 Consensus size: 17
5848110 ATATATAATG
5848120 AAATAAATAAAAATACAA
1 AAATAAATAAAAATA-AA
*
5848138 AAATAAAT-AAAACAAA
1 AAATAAATAAAAATAAA
5848154 AAAT-AATAAAAATATATA
1 AAATAAATAAAAATA-A-A
** *
5848172 TTATTAATAATAAATAAA
1 AAATAAATAA-AAATAAA
* * **
5848190 TAATAAAT--ACATAGG
1 AAATAAATAAAAATAAA
* *
5848205 ATATACATAAAATATAAA
1 AAATAAATAAAA-ATAAA
5848223 ATAA-AAATAAAAATAAA
1 A-AATAAATAAAAATAAA
5848240 AA
1 AA
5848242 TGACAAAGAT
Statistics
Matches: 78, Mismatches: 17, Indels: 20
0.68 0.15 0.17
Matches are distributed among these distances:
15 12 0.15
16 12 0.15
17 13 0.17
18 29 0.37
19 7 0.09
20 5 0.06
ACGTcount: A:0.71, C:0.03, G:0.02, T:0.24
Consensus pattern (17 bp):
AAATAAATAAAAATAAA
Found at i:5848154 original size:15 final size:15
Alignment explanation
Indices: 5848124--5848164 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
5848114 ATAATGAAAT
*
5848124 AAATAAA-AATACAA
1 AAATAAATAAAACAA
5848138 AAATAAATAAAACAA
1 AAATAAATAAAACAA
5848153 AAA-ATAATAAAA
1 AAATA-AATAAAA
5848165 ATATATATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 8 0.33
15 16 0.67
ACGTcount: A:0.80, C:0.05, G:0.00, T:0.15
Consensus pattern (15 bp):
AAATAAATAAAACAA
Found at i:5848231 original size:6 final size:6
Alignment explanation
Indices: 5848213--5848242 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
5848203 GGATATACAT
5848213 AAAATA TAAAATA AAAATA AAAATA AAAAT
1 AAAATA -AAAATA AAAATA AAAATA AAAAT
5848243 GACAAAGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
AAAATA
Found at i:5848421 original size:13 final size:13
Alignment explanation
Indices: 5848403--5848444 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
5848393 AACATTTTCA
5848403 TTTTCTTTTTGTT
1 TTTTCTTTTTGTT
5848416 TTTTCTTTTTGTT
1 TTTTCTTTTTGTT
5848429 TTTT-TTGTTT-TT
1 TTTTCTT-TTTGTT
5848441 TTTT
1 TTTT
5848445 ACCAAAGCTC
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 8 0.29
13 20 0.71
ACGTcount: A:0.00, C:0.05, G:0.07, T:0.88
Consensus pattern (13 bp):
TTTTCTTTTTGTT
Found at i:5848542 original size:13 final size:13
Alignment explanation
Indices: 5848536--5848567 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
5848526 TTTTTTTTGC
*
5848536 TTTTTTTGTTTTT
1 TTTTTTTGCTTTT
5848549 TTTTTTTGCTTTT
1 TTTTTTTGCTTTT
5848562 TTTTTT
1 TTTTTT
5848568 AAATTGATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.00, C:0.03, G:0.06, T:0.91
Consensus pattern (13 bp):
TTTTTTTGCTTTT
Found at i:5848552 original size:19 final size:19
Alignment explanation
Indices: 5848516--5848551 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
5848506 ATAGAGGTAA
5848516 CTTTTTTTCATTTTTTTTG
1 CTTTTTTTCATTTTTTTTG
*
5848535 CTTTTTTT-GTTTTTTTT
1 CTTTTTTTCATTTTTTTT
5848552 TTTTGCTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.03, C:0.08, G:0.06, T:0.83
Consensus pattern (19 bp):
CTTTTTTTCATTTTTTTTG
Found at i:5848553 original size:14 final size:13
Alignment explanation
Indices: 5848536--5848567 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
5848526 TTTTTTTTGC
5848536 TTTTTTTGTTTTT
1 TTTTTTTGTTTTT
5848549 TTTTTTTGCTTTTT
1 TTTTTTTG-TTTTT
5848563 TTTTT
1 TTTTT
5848568 AAATTGATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.00, C:0.03, G:0.06, T:0.91
Consensus pattern (13 bp):
TTTTTTTGTTTTT
Found at i:5848683 original size:18 final size:17
Alignment explanation
Indices: 5848645--5848683 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
5848635 ATAGAGGCAA
5848645 TTTTTTTTTTTAATTTT
1 TTTTTTTTTTTAATTTT
*
5848662 TTTTGTTTTTTT-GTTTT
1 TTTT-TTTTTTTAATTTT
5848679 TTTTT
1 TTTTT
5848684 AAATGATCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 12 0.60
18 7 0.35
ACGTcount: A:0.05, C:0.00, G:0.05, T:0.90
Consensus pattern (17 bp):
TTTTTTTTTTTAATTTT
Found at i:5848731 original size:115 final size:118
Alignment explanation
Indices: 5848528--5848789 Score: 383
Period size: 115 Copynumber: 2.2 Consensus size: 118
5848518 TTTTTTCATT
*
5848528 TTTTTTGCTTTTT--TTGTTTTT-TTTTTTTGCTTTTTTTTTTAAATTGATCAAAGCTCCTCCAA
1 TTTTTTG-TTTTTAATTTTTTTTGTTTTTTTG--TTTTTTTTTAAATTGATCAAAGCTCCTCCAA
*
5848590 GCAGAGGTTCAATGACTTTGAGAAACATAAACAAAGCTCCTCTAAATAGAGGCAA-
63 GCAGAGGCTCAATGACTTTGAGAAACATAAACAAAGCTCCTCTAAATAGAGGCAAC
* *
5848645 TTTTTT-TTTTTAATTTTTTTTGTTTTTTTGTTTTTTTTTAAA-TGATCAAAGCTCTTCTAAGCA
1 TTTTTTGTTTTTAATTTTTTTTGTTTTTTTGTTTTTTTTTAAATTGATCAAAGCTCCTCCAAGCA
** *
5848708 GAGGCTCAATGACTTTGAGAAACATAAATGAAGCTCCTCTAAATAGAGGTAAC
66 GAGGCTCAATGACTTTGAGAAACATAAACAAAGCTCCTCTAAATAGAGGCAAC
*
5848761 TTTTTTGTTTTTTATTTTTTTTGTTTTTT
1 TTTTTTGTTTTTAATTTTTTTTGTTTTTT
5848790 CTTTTAAAGC
Statistics
Matches: 132, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
115 72 0.55
116 18 0.14
117 34 0.26
118 8 0.06
ACGTcount: A:0.25, C:0.12, G:0.13, T:0.50
Consensus pattern (118 bp):
TTTTTTGTTTTTAATTTTTTTTGTTTTTTTGTTTTTTTTTAAATTGATCAAAGCTCCTCCAAGCA
GAGGCTCAATGACTTTGAGAAACATAAACAAAGCTCCTCTAAATAGAGGCAAC
Found at i:5848782 original size:16 final size:16
Alignment explanation
Indices: 5848761--5848794 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
5848751 TAGAGGTAAC
5848761 TTTTTTGTTTTTTATT
1 TTTTTTGTTTTTTATT
*
5848777 TTTTTTGTTTTTTCTT
1 TTTTTTGTTTTTTATT
5848793 TT
1 TT
5848795 AAAGCTCCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.03, C:0.03, G:0.06, T:0.88
Consensus pattern (16 bp):
TTTTTTGTTTTTTATT
Found at i:5848813 original size:103 final size:109
Alignment explanation
Indices: 5848574--5848831 Score: 296
Period size: 115 Copynumber: 2.4 Consensus size: 109
5848564 TTTTAAATTG
* *
5848574 ATCAAAGCTCCTCCAAGCAGAGGTTCAATGACTTTGAGAAACATAAACAAAGCTCCTCTAAATAG
1 ATCAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAGAAACATAAACAAAGCTCCTCTAAATAG
* * *
5848639 AGGCAATTTTTTTTTTTAATTTTTTTTGTTTTTTTGTTTTTTTTTAAAT
66 AGGCAA---TCTTTTTTAATTTTTTATGTTTTTTTGTTTTTTCTT--AT
* **
5848688 GATCAAAGCTCTTCTAAGCAGAGGCTCAATGACTTTGAGAAACATAAATGAAGCTCCTCTAAATA
1 -ATCAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAGAAACATAAACAAAGCTCCTCTAAATA
* *
5848753 GAGGTAA-CTTTTTT-GTTTTTTAT-TTTTTTTGTTTTTTCTT-T
65 GAGGCAATCTTTTTTAATTTTTTATGTTTTTTTGTTTTTTCTTAT
* * *
5848794 -T-AAAGCTCCTCTAAACAGAGGCTCGACGACTTTG-GAAA
1 ATCAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAGAAA
5848832 GTAAATTGCT
Statistics
Matches: 129, Mismatches: 14, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
102 4 0.03
103 29 0.22
104 1 0.01
106 1 0.01
109 16 0.12
110 7 0.05
111 6 0.05
115 65 0.50
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.40
Consensus pattern (109 bp):
ATCAAAGCTCCTCTAAGCAGAGGCTCAATGACTTTGAGAAACATAAACAAAGCTCCTCTAAATAG
AGGCAATCTTTTTTAATTTTTTATGTTTTTTTGTTTTTTCTTAT
Found at i:5848930 original size:42 final size:41
Alignment explanation
Indices: 5848798--5849074 Score: 412
Period size: 41 Copynumber: 6.7 Consensus size: 41
5848788 TTCTTTTAAA
* *
5848798 GCTCCTCTAAACAGAGGCTCGACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
*
5848839 GCTCCTTTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
* * *
5848880 GCTTCTCTAAACAGAGGCACCATGACTTTGGAAAAGTTAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATT
*
5848922 GTTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATT
* * *
5848964 GCTCCTATAAATAGAGGCACCATGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
**
5849005 GCTCCTCTAAACAGAGGCACCACGACTTTTAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAGTAAATT
5849047 GCTCCTCTAAACAG-GGCACCACGACTTT
1 GCTCCTCTAAACAGAGGCACCACGACTTT
5849075 CCCCTCTAAA
Statistics
Matches: 214, Mismatches: 20, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
40 3 0.01
41 110 0.51
42 101 0.47
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
Found at i:5848943 original size:83 final size:82
Alignment explanation
Indices: 5848798--5849074 Score: 412
Period size: 83 Copynumber: 3.4 Consensus size: 82
5848788 TTCTTTTAAA
* * *
5848798 GCTCCTCTAAACAGAGGCTCGACGACTTTGGAAAGTAAATTGCTCCTTTAAACAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
5848863 ACTTTGGAAAGTAAATT
66 ACTTTGGAAAGTAAATT
* * * *
5848880 GCTTCTCTAAACAGAGGCACCATGACTTTGGAAAAGTTAATTGTTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
5848945 GACTTTGGAAAAGTAAATT
65 GACTTTGG-AAAGTAAATT
* * *
5848964 GCTCCTATAAATAGAGGCACCATGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
**
5849029 ACTTTTAAAAAGTAAATT
66 AC-TTTGGAAAGTAAATT
5849047 GCTCCTCTAAACAG-GGCACCACGACTTT
1 GCTCCTCTAAACAGAGGCACCACGACTTT
5849075 CCCCTCTAAA
Statistics
Matches: 175, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
82 40 0.23
83 94 0.54
84 41 0.23
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (82 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
ACTTTGGAAAGTAAATT
Found at i:5849100 original size:28 final size:27
Alignment explanation
Indices: 5849050--5849102 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
5849040 GTAAATTGCT
5849050 CCTCTAAACAGGGCACCACGACTTTCC
1 CCTCTAAACAGGGCACCACGACTTTCC
* *
5849077 CCTCTAAATAGAGGCACCATGACTTT
1 CCTCTAAACAG-GGCACCACGACTTT
5849103 GGAAAGTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.28, C:0.34, G:0.15, T:0.23
Consensus pattern (27 bp):
CCTCTAAACAGGGCACCACGACTTTCC
Found at i:5849122 original size:41 final size:42
Alignment explanation
Indices: 5849077--5849161 Score: 145
Period size: 41 Copynumber: 2.0 Consensus size: 42
5849067 ACGACTTTCC
* *
5849077 CCTCTAAATAGAGGCACCATGAC-TTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
5849118 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
5849160 CC
1 CC
5849162 CTGACAATCA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
41 21 0.51
42 20 0.49
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.25
Consensus pattern (42 bp):
CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
Found at i:5849128 original size:68 final size:70
Alignment explanation
Indices: 5849008--5849143 Score: 222
Period size: 69 Copynumber: 2.0 Consensus size: 70
5848998 GTAAATTGCT
5849008 CCTCTAAACAGAGGCACCACGACTTTTAAAAAGTAAATTGCTCCTCTAAACAG-GGCACCACGAC
1 CCTCTAAACAGAGGCACCACGACTTTTAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
5849072 TTTCC
66 TTTCC
* * **
5849077 CCTCTAAATAGAGGCACCATGAC-TTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
1 CCTCTAAACAGAGGCACCACGACTTTTAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
5849141 TTT
66 TTT
5849144 TGGAAAGTAA
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
68 27 0.44
69 35 0.56
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (70 bp):
CCTCTAAACAGAGGCACCACGACTTTTAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGAC
TTTCC
Found at i:5849467 original size:43 final size:42
Alignment explanation
Indices: 5849361--5849497 Score: 136
Period size: 43 Copynumber: 3.2 Consensus size: 42
5849351 TCAAAGATCC
** * *
5849361 TCATTTGAATTTTGGAGGCTCACATCCAAAAGTT-AAAGGTTCT
1 TCATTTGAATTTTGGA-ATTCACATCCAAAAATTCAAAGCTT-T
** *
5849404 T-ATTTGGCAAACTTGGAATTCATATCCAAAAA-TCTAAAGCTTT
1 TCATTT-G-AATTTTGGAATTCACATCCAAAAATTC-AAAGCTTT
5849447 TCATTTGAATTTTGGAAATTCACATCCAAAAATTCAAAGCTTT
1 TCATTTGAATTTTGG-AATTCACATCCAAAAATTCAAAGCTTT
5849490 TCATTTGA
1 TCATTTGA
5849498 GTTCAAAGGC
Statistics
Matches: 77, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
42 11 0.14
43 47 0.61
44 19 0.25
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.36
Consensus pattern (42 bp):
TCATTTGAATTTTGGAATTCACATCCAAAAATTCAAAGCTTT
Found at i:5849729 original size:22 final size:22
Alignment explanation
Indices: 5849681--5849739 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
5849671 GGTTTCACTC
5849681 CTCAAAGATTCTCATTTTGAAAT
1 CTCAAAGATTCTCA-TTTGAAAT
**
5849704 -TCAAAGATTCTCATTTGAGTT
1 CTCAAAGATTCTCATTTGAAAT
*
5849725 CTCAAAAATTCTCAT
1 CTCAAAGATTCTCAT
5849740 GAAAACATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.19
22 26 0.81
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.39
Consensus pattern (22 bp):
CTCAAAGATTCTCATTTGAAAT
Found at i:5850839 original size:8 final size:9
Alignment explanation
Indices: 5850811--5850865 Score: 67
Period size: 9 Copynumber: 6.1 Consensus size: 9
5850801 TTTGAATCTC
5850811 TTTTTTTCA
1 TTTTTTTCA
*
5850820 -TTTTCTCA
1 TTTTTTTCA
*
5850828 TTTTTTTCT
1 TTTTTTTCA
5850837 TTTTTTCTCA
1 TTTTTT-TCA
*
5850847 TTTTTTTCT
1 TTTTTTTCA
5850856 TTTTTTTCA
1 TTTTTTTCA
5850865 T
1 T
5850866 CATCTTCTCT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
8 7 0.18
9 23 0.61
10 8 0.21
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTTTTTCA
Found at i:5850858 original size:18 final size:19
Alignment explanation
Indices: 5850820--5850892 Score: 94
Period size: 19 Copynumber: 3.7 Consensus size: 19
5850810 CTTTTTTTCA
5850820 TTTTCTCATTTTTTTCTTT
1 TTTTCTCATTTTTTTCTTT
5850839 TTTTCTCATTTTTTTCTTTT
1 TTTTCTCATTTTTTTC-TTT
*
5850859 TTTTCATCATCTTCTCTT-TTT
1 TTTTC-TCAT-TT-TTTTCTTT
5850880 TTTTCTCATTTTT
1 TTTTCTCATTTTT
5850893 CATCCATTGT
Statistics
Matches: 48, Mismatches: 2, Indels: 9
0.81 0.03 0.15
Matches are distributed among these distances:
18 1 0.02
19 18 0.38
20 12 0.25
21 12 0.25
22 2 0.04
23 3 0.06
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTTCTCATTTTTTTCTTT
Found at i:5853931 original size:59 final size:58
Alignment explanation
Indices: 5853780--5854119 Score: 398
Period size: 59 Copynumber: 5.7 Consensus size: 58
5853770 GAAATGAAAG
* *
5853780 TGATGCTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTTGATTTTCAAGGAAAAT
1 TGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAA-TTT-ATTTTCAAGGAAAAT
* *
5853840 TGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTGGAAATTTATTTTTAAGGAAAAT
1 TGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTATTTTCAAGGAAAAT
*
5853897 TGATACTTTCAACTTTTCCCCAAAAATAGTTTTTTTGAAAATTTA-TTTCAAAGGAAAAT
1 TGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTGGAAATTTATTTTC-AAGGAAAAT
* * * *
5853956 TGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTTTTTTTTGAAAATTTATTTTTAAGGAAAAT
1 TGATACTTTCAACTTTTCCCCAAAAA-------TATTTTTTTGGAAATTTATTTTCAAGGAAAAT
* ** ** *
5854021 GGATACTTTCAACTTTTCCTTAAAAATA-TTTTTCAGAAATTTTGATTTTCAAGGAAGAT
1 TGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAA-TTT-ATTTTCAAGGAAAAT
5854080 TGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGGAA
1 TGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTGGAA
5854120 CTTTTGATTT
Statistics
Matches: 244, Mismatches: 21, Indels: 29
0.83 0.07 0.10
Matches are distributed among these distances:
57 49 0.20
58 10 0.04
59 97 0.40
60 27 0.11
61 8 0.03
65 49 0.20
66 4 0.02
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.45
Consensus pattern (58 bp):
TGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTATTTTCAAGGAAAAT
Found at i:5854037 original size:124 final size:121
Alignment explanation
Indices: 5853785--5854115 Score: 444
Period size: 124 Copynumber: 2.7 Consensus size: 121
5853775 GAAAGTGATG
5853785 CTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTTGATTTTCAAGGAAAATTGATACTTTC
1 CTTTCAACTTTTCCCTAAAAATATTTTTTT-GAAATTTTGATTTTCAAGGAAAATTGATACTTTC
* * *
5853850 AACTTTTCCCTAAAAA------TATTTTTTGGAAATTTATTTTTAAGGAAAATTGATA
65 AACTTTTCCC-AAAAATTTTTTTTTTTTTTGAAAATTTATTTTTAAGGAAAATGGATA
* *
5853902 CTTTCAACTTTTCCCCAAAAATAGTTTTTTTGAAAATTT-A-TTTCAAAGGAAAATTGATACTTT
1 CTTTCAACTTTTCCCTAAAAATA-TTTTTTTGAAATTTTGATTTTC-AAGGAAAATTGATACTTT
5853965 CAACTTTTCCTCAAAAATCCTTTTTTTTTTTTTGAAAATTTATTTTTAAGGAAAATGGATA
64 CAACTTTTCC-CAAAAAT--TTTTTTTTTTTTTGAAAATTTATTTTTAAGGAAAATGGATA
* ** *
5854026 CTTTCAACTTTTCCTTAAAAATATTTTTCAGAAATTTTGATTTTCAAGGAAGATTGATACTTTCA
1 CTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTTGATTTTCAAGGAAAATTGATACTTTCA
*
5854091 ACTTTTCCCCAAAAATATTTTTTTT
66 ACTTTT-CCCAAAAATTTTTTTTTT
5854116 GGAACTTTTG
Statistics
Matches: 188, Mismatches: 12, Indels: 23
0.84 0.05 0.10
Matches are distributed among these distances:
115 4 0.02
116 34 0.18
117 30 0.16
118 7 0.04
122 8 0.04
123 12 0.06
124 87 0.46
125 6 0.03
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (121 bp):
CTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTTGATTTTCAAGGAAAATTGATACTTTCA
ACTTTTCCCAAAAATTTTTTTTTTTTTTGAAAATTTATTTTTAAGGAAAATGGATA
Found at i:5854173 original size:16 final size:15
Alignment explanation
Indices: 5854154--5854215 Score: 61
Period size: 16 Copynumber: 3.9 Consensus size: 15
5854144 TAGAATAATA
5854154 AAAAAAAATAAAAGT
1 AAAAAAAATAAAAGT
* *
5854169 GAAAATAAATAAAAAT
1 -AAAAAAAATAAAAGT
*
5854185 AAAAATAAAGAAAAGT
1 AAAAA-AAATAAAAGT
5854201 AAAACAAAAATAAAA
1 -AAA-AAAAATAAAA
5854216 ATAAGATAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
15 4 0.11
16 21 0.57
17 10 0.27
18 2 0.05
ACGTcount: A:0.79, C:0.02, G:0.06, T:0.13
Consensus pattern (15 bp):
AAAAAAAATAAAAGT
Found at i:5854175 original size:22 final size:23
Alignment explanation
Indices: 5854140--5854237 Score: 90
Period size: 22 Copynumber: 4.0 Consensus size: 23
5854130 TTATTTAAAG
5854140 AAAATAGAATAATAAAAAAAAATA
1 AAAATAGAA-AATAAAAAAAAATA
* *
5854164 AAAGT-GAAAATAAATAAAAATA
1 AAAATAGAAAATAAAAAAAAATA
5854186 AAAATAAAGAAAAGTAAAACAAAAATA
1 AAAAT--AGAAAA-TAAAA-AAAAATA
* *
5854213 AAAATAAGATAAAGATAAAAAAATA
1 AAAAT-AGA-AAATAAAAAAAAATA
5854238 TTAAATAAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
22 17 0.27
23 3 0.05
24 4 0.06
25 12 0.19
26 11 0.18
27 15 0.24
ACGTcount: A:0.77, C:0.01, G:0.07, T:0.15
Consensus pattern (23 bp):
AAAATAGAAAATAAAAAAAAATA
Found at i:5854184 original size:6 final size:6
Alignment explanation
Indices: 5854147--5854233 Score: 54
Period size: 6 Copynumber: 14.3 Consensus size: 6
5854137 AAGAAAATAG
* * *
5854147 AATAATA AAAAAA AATAAA AGTGAA AAT--A AATAAA AATAAA AATAAA
1 AATAA-A AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
* * * *
5854194 GAAAAGTAA AACAAA AATAAA AAT-AA GATAAA GATAAA AA
1 -AATA--AA AATAAA AATAAA AATAAA AATAAA AATAAA AA
5854234 AATATTAAAT
Statistics
Matches: 64, Mismatches: 10, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
4 4 0.06
5 4 0.06
6 44 0.69
7 7 0.11
8 3 0.05
9 2 0.03
ACGTcount: A:0.77, C:0.01, G:0.07, T:0.15
Consensus pattern (6 bp):
AATAAA
Found at i:5854199 original size:32 final size:33
Alignment explanation
Indices: 5854140--5854227 Score: 99
Period size: 32 Copynumber: 2.7 Consensus size: 33
5854130 TTATTTAAAG
* * *
5854140 AAAATAGAATAATAAAAAAAAATAAAAGTGAAA-A
1 AAAATA-AA-AATAAAAATAAAGAAAAGTAAAACA
*
5854174 TAAATAAAAATAAAAATAAAGAAAAGTAAAACA
1 AAAATAAAAATAAAAATAAAGAAAAGTAAAACA
*
5854207 AAAATAAAAAT-AAGATAAAGA
1 AAAATAAAAATAAAAATAAAGA
5854228 TAAAAAAATA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
32 29 0.62
33 13 0.28
34 5 0.11
ACGTcount: A:0.76, C:0.01, G:0.08, T:0.15
Consensus pattern (33 bp):
AAAATAAAAATAAAAATAAAGAAAAGTAAAACA
Found at i:5854224 original size:11 final size:11
Alignment explanation
Indices: 5854140--5854296 Score: 76
Period size: 10 Copynumber: 13.9 Consensus size: 11
5854130 TTATTTAAAG
5854140 AAAATAGAATAAT
1 AAAATA-AA-AAT
5854153 AAAA-AAAAAT
1 AAAATAAAAAT
*
5854163 AAAAGTGAAAAT
1 AAAA-TAAAAAT
5854175 -AAATAAAAAT
1 AAAATAAAAAT
*
5854185 AAAAATAAAGA-
1 -AAAATAAAAAT
*
5854196 AAAGTAAAACA-
1 AAAATAAAA-AT
5854207 AAAATAAAAAT
1 AAAATAAAAAT
* *
5854218 AAGATAAAGAT
1 AAAATAAAAAT
*
5854229 AAAA-AAATAT
1 AAAATAAAAAT
* *
5854239 TAAATAAAACCT
1 AAAATAAAA-AT
*
5854251 AATCTAATAAATAT
1 AA---AATAAAAAT
*
5854265 AAAA-ACAAAT
1 AAAATAAAAAT
5854275 AAAATAAACAA-
1 AAAATAAA-AAT
5854286 ATAAATAAAAA
1 A-AAATAAAAA
5854297 AAATTCAAAA
Statistics
Matches: 111, Mismatches: 19, Indels: 30
0.69 0.12 0.19
Matches are distributed among these distances:
10 37 0.33
11 36 0.32
12 25 0.23
13 4 0.04
14 3 0.03
15 6 0.05
ACGTcount: A:0.74, C:0.04, G:0.04, T:0.18
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:5854226 original size:27 final size:28
Alignment explanation
Indices: 5854179--5854232 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
5854169 GAAAATAAAT
5854179 AAAAATAAAAATAAAGAAAAG-TAAAAC
1 AAAAATAAAAATAAAGAAAAGATAAAAC
5854206 AAAAATAAAAAT-AAGATAAAGATAAAA
1 AAAAATAAAAATAAAGA-AAAGATAAAA
5854233 AAATATTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 4 0.16
27 16 0.64
28 5 0.20
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.13
Consensus pattern (28 bp):
AAAAATAAAAATAAAGAAAAGATAAAAC
Found at i:5855202 original size:5 final size:6
Alignment explanation
Indices: 5855187--5855344 Score: 65
Period size: 6 Copynumber: 25.0 Consensus size: 6
5855177 TATAGGATAA
* * *
5855187 AAAAAT AAAAAT AAAAAT ATCTAATT AAATAAAT AAAAAT ACAAAA- ATAAAT
1 AAAAAT AAAAAT AAAAAT A--AAAAT -AA-AAAT AAAAAT A-AAAAT AAAAAT
* ** * *
5855239 -AAAAT AAAAAAT AATAA- AAAAAT ATTATT AATAAT AAATAAAT AACAAAT
1 AAAAAT -AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT -AA-AAAT AA-AAAT
* * *
5855289 ACATAGGAT ATATAT A-AAAT ATAAAAT -AAAAT AAAAAT AAAAAT AAAAAT
1 A-A-A-AAT AAAAAT AAAAAT A-AAAAT AAAAAT AAAAAT AAAAAT AAAAAT
5855339 AAAAAT
1 AAAAAT
5855345 GACAAAGATA
Statistics
Matches: 116, Mismatches: 20, Indels: 32
0.69 0.12 0.19
Matches are distributed among these distances:
5 20 0.17
6 56 0.48
7 25 0.22
8 11 0.09
9 4 0.03
ACGTcount: A:0.72, C:0.03, G:0.01, T:0.24
Consensus pattern (6 bp):
AAAAAT
Found at i:5855215 original size:28 final size:26
Alignment explanation
Indices: 5855131--5855289 Score: 88
Period size: 28 Copynumber: 5.6 Consensus size: 26
5855121 AATAAAAATC
* *
5855131 AAATAAAAAAATAATAGATAATTAGAAA
1 AAATAAAAAAAAAATA-TTAATTA-AAA
*
5855159 AAATAATAAAAAAAATATTATAGGATAAAA
1 AAATAA-AAAAAAAATATTA-A--TTAAAA
*
5855189 AAATAAAAATAAAAATATCTAATTAAAT
1 AAATAAAAA-AAAAATAT-TAATTAAAA
* *
5855217 AAATAAAAATACAAAA-ATAAATAAAATAAA
1 AAATAAAAA-A-AAAATATTAAT--TA-AAA
*
5855247 AAATAATAAAAAAATATT-ATTAATAA
1 AAATAAAAAAAAAATATTAATTAA-AA
* *
5855273 TAAATAAATAACAAATA
1 -AAATAAAAAAAAAATA
5855290 CATAGGATAT
Statistics
Matches: 104, Mismatches: 14, Indels: 27
0.72 0.10 0.19
Matches are distributed among these distances:
25 1 0.01
26 3 0.03
27 16 0.15
28 31 0.30
29 21 0.20
30 28 0.27
31 4 0.04
ACGTcount: A:0.72, C:0.02, G:0.03, T:0.24
Consensus pattern (26 bp):
AAATAAAAAAAAAATATTAATTAAAA
Found at i:5855223 original size:22 final size:18
Alignment explanation
Indices: 5855213--5855258 Score: 71
Period size: 16 Copynumber: 2.7 Consensus size: 18
5855203 ATATCTAATT
5855213 AAATAAATAAAAATACAA
1 AAATAAATAAAAATACAA
5855231 AAATAAAT-AAAATA-AA
1 AAATAAATAAAAATACAA
5855247 AAAT-AATAAAAA
1 AAATAAATAAAAA
5855259 AATATTATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
15 3 0.11
16 10 0.37
17 6 0.22
18 8 0.30
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.17
Consensus pattern (18 bp):
AAATAAATAAAAATACAA
Found at i:5855243 original size:27 final size:26
Alignment explanation
Indices: 5855183--5855341 Score: 98
Period size: 27 Copynumber: 6.0 Consensus size: 26
5855173 ATATTATAGG
*
5855183 ATAAAA-AAATAAAAATAAAAATATCTA
1 ATAAAATAAATAAAAATAAAAA-AT-AA
*
5855210 ATTAAATAAATAAAAATACAAAAATAA
1 ATAAAATAAATAAAAATA-AAAAATAA
5855237 ATAAAATAAA-AAATAATAAAAAAATATTA
1 ATAAAATAAATAAA-AAT-AAAAAATA--A
* * *
5855266 TTAATAATAAAT--AAATAACAAATAC
1 ATAA-AATAAATAAAAATAAAAAATAA
** * *
5855291 ATAGGATATATATAAAATATAAAATAA
1 ATAAAATAAATA-AAAATAAAAAATAA
*
5855318 A-ATAA-AAATAAAAAT-AAAAATAA
1 ATAAAATAAATAAAAATAAAAAATAA
5855341 A
1 A
5855342 AATGACAAAG
Statistics
Matches: 104, Mismatches: 17, Indels: 26
0.71 0.12 0.18
Matches are distributed among these distances:
23 8 0.08
24 10 0.10
25 6 0.06
26 5 0.05
27 43 0.41
28 17 0.16
29 9 0.09
30 6 0.06
ACGTcount: A:0.72, C:0.03, G:0.01, T:0.24
Consensus pattern (26 bp):
ATAAAATAAATAAAAATAAAAAATAA
Found at i:5855340 original size:65 final size:61
Alignment explanation
Indices: 5855188--5855341 Score: 157
Period size: 65 Copynumber: 2.4 Consensus size: 61
5855178 ATAGGATAAA
* *
5855188 AAAATAAAAATAAAAATATCTAATTAAATAAATAAAAATACAAAAATAAATAAAATAAAAAAT
1 AAAATAAAAATAAAAATA--AAAATAAATAAATAAAAATACAAAAATAAATAAAATAAAAAAT
** * * * * *
5855251 AATAA-AAAAATATTATTAATAATAAATAAATAACAAATACATAGGATATATATAAAATATAAAA
1 AA-AATAAAAATAAAAATAAAAATAAATAAATAA-AAATACA-A--AAATAAATAAAATAAAAAA
5855315 T
61 T
5855316 AAAATAAAAATAAAAATAAAAATAAA
1 AAAATAAAAATAAAAATAAAAATAAA
5855342 AATGACAAAG
Statistics
Matches: 72, Mismatches: 13, Indels: 10
0.76 0.14 0.11
Matches are distributed among these distances:
61 12 0.17
62 7 0.10
63 13 0.18
64 4 0.06
65 36 0.50
ACGTcount: A:0.72, C:0.03, G:0.01, T:0.24
Consensus pattern (61 bp):
AAAATAAAAATAAAAATAAAAATAAATAAATAAAAATACAAAAATAAATAAAATAAAAAAT
Found at i:5855344 original size:18 final size:18
Alignment explanation
Indices: 5855304--5855358 Score: 67
Period size: 18 Copynumber: 2.9 Consensus size: 18
5855294 GGATATATAT
5855304 AAAATATAAAATAAAATA
1 AAAATATAAAATAAAATA
5855322 AAAATA-AAAATAAAAATA
1 AAAATATAAAAT-AAAATA
*
5855340 AAAATGACAAAGATAAAAT
1 AAAAT-ATAAA-ATAAAAT
5855359 TGGACCTACC
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.15
18 17 0.52
19 1 0.03
20 8 0.24
21 2 0.06
ACGTcount: A:0.76, C:0.02, G:0.04, T:0.18
Consensus pattern (18 bp):
AAAATATAAAATAAAATA
Found at i:5855722 original size:26 final size:26
Alignment explanation
Indices: 5855686--5855738 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5855676 GTTGACTTAG
*
5855686 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5855712 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5855738 G
1 G
5855739 ATCGGACCCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5857298 original size:26 final size:26
Alignment explanation
Indices: 5857269--5857320 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
5857259 GTTGACTTAG
* * *
5857269 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
*
5857295 GCATATGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
5857321 AATCGGACCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:5857584 original size:311 final size:316
Alignment explanation
Indices: 5857009--5857606 Score: 807
Period size: 311 Copynumber: 1.9 Consensus size: 316
5856999 GTGCCTAAAC
*
5857009 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGTTTGCC
1 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCACGTCTCTCTGGCCGGCGTAG-G-TTGCC
* * * *
5857074 TGCCAGCCCACCCGTTCGTTTCGTCAGTTGGCTTAGGGATACGGAGTTCATTCCCAGTCTAAGAT
64 CGCCAGCCCA--C-TTC-TTTCG-CAGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGAT
* * * * * * *
5857139 CAGGCCGGACTGAGGGTTGCGATAGTAGGATCGACAGCACACAGAGGGGGACCCATCCGATCCCT
124 CAGACCAGACCGAGGGTTACGACAGCAGGATCGACAGCACACAGAGGGGGACCCATCCGATCCCC
* * * *
5857204 AACTTACGGATCCTGCCCCTCTGGTCGGCTGAGCACCCGCATGCTCATTTCGTGGGTTGACTTAG
189 AACTTACGCATCCCGCCCCTCTGGTCGGCTGAGCACCCGCACGCTCATTTCGCGGGTTGACTTAG
5857269 GCATACGGAGTTCATTCCTAGTCTAAGCATATGAAATTCATTCCCAGTCTAAAATCGGACCTA
254 GCATACGGAGTTCATTCCTAGTCTAAGCATATGAAATTCATTCCCAGTCTAAAATCGGACCTA
5857332 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCACGTCTCTCTGGCCGGCGTA-G-TGCCCG
1 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCACGTCTCTCTGGCCGGCGTAGGTTGCCCG
* * * *
5857395 CCTGCTCA-TT-TTATCG-A-TTGGCTTAGGCATACAGAGTTCATTCCCAATCTAGGATGAGACC
66 CCAGCCCACTTCTT-TCGCAGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACC
* * ** *
5857456 AGACCGA-GGTATACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGA-CCGATCCCCGACT
130 AGACCGAGGGT-TACGACAGCAGGATCGACAGCACACAGAGGGGGACCC-ATCCGATCCCCAACT
* *
5857519 TGCGCATCCCGCCCCTCTGGTCGGCTGAGCACCCGCACGCTCGTTTCGCGGGTTGACTTAGGCAT
193 TACGCATCCCGCCCCTCTGGTCGGCTGAGCACCCGCACGCTCATTTCGCGGGTTGACTTAGGCAT
5857584 ACGGAGTTCATTCCTAGTCTAAG
258 ACGGAGTTCATTCCTAGTCTAAG
5857607 AGCGGACCGG
Statistics
Matches: 245, Mismatches: 27, Indels: 18
0.84 0.09 0.06
Matches are distributed among these distances:
310 3 0.01
311 166 0.68
312 2 0.01
313 2 0.01
314 3 0.01
315 2 0.01
319 11 0.04
321 1 0.00
323 55 0.22
ACGTcount: A:0.20, C:0.31, G:0.25, T:0.23
Consensus pattern (316 bp):
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCACGTCTCTCTGGCCGGCGTAGGTTGCCCG
CCAGCCCACTTCTTTCGCAGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCA
GACCGAGGGTTACGACAGCAGGATCGACAGCACACAGAGGGGGACCCATCCGATCCCCAACTTAC
GCATCCCGCCCCTCTGGTCGGCTGAGCACCCGCACGCTCATTTCGCGGGTTGACTTAGGCATACG
GAGTTCATTCCTAGTCTAAGCATATGAAATTCATTCCCAGTCTAAAATCGGACCTA
Found at i:5858483 original size:26 final size:26
Alignment explanation
Indices: 5858454--5858506 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5858444 GTTGACTTAG
*
5858454 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5858480 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5858506 G
1 G
5858507 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5858603 original size:11 final size:11
Alignment explanation
Indices: 5858587--5858619 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
5858577 GTCGGGGCAC
5858587 CATCGTCGGAG
1 CATCGTCGGAG
5858598 CATCGTCGGAG
1 CATCGTCGGAG
*
5858609 CATCGCCGGAG
1 CATCGTCGGAG
5858620 AACCTGACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.30, G:0.36, T:0.15
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:5859690 original size:26 final size:26
Alignment explanation
Indices: 5859651--5859707 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
5859641 CTCCTTCAAA
* * **
5859651 AAAAATTTTAAAAAATCCTGAACCAT
1 AAAAAGTTTAAAAAATCATGAAAAAT
*
5859677 AAAAAGTTTCAAAAATCATGAAAAAT
1 AAAAAGTTTAAAAAATCATGAAAAAT
5859703 AAAAA
1 AAAAA
5859708 ACGAGTCGTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.61, C:0.11, G:0.05, T:0.23
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCATGAAAAAT
Found at i:5860714 original size:26 final size:26
Alignment explanation
Indices: 5860685--5860735 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
5860675 TGACTTAGGT
5860685 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
5860711 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
5860736 ATAGGACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:5862168 original size:26 final size:26
Alignment explanation
Indices: 5862132--5862184 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5862122 NNNGTCTGAT
*
5862132 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
5862158 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
5862184 C
1 C
5862185 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:5863069 original size:26 final size:26
Alignment explanation
Indices: 5863029--5863081 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5863019 CTGGTCCAAT
*
5863029 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCATATG
*
5863055 CTTAGACTGGTAATGAACTCCATATG
1 CTTAGACTGGCAATGAACTCCATATG
5863081 C
1 C
5863082 CTAAGTGTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:5863428 original size:395 final size:393
Alignment explanation
Indices: 5862691--5863482 Score: 1158
Period size: 395 Copynumber: 2.0 Consensus size: 393
5862681 AAAAAACTCG
* *
5862691 AAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTGATGGCTACT
1 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACT
* * ** * *
5862756 GGCAGCAAACCAATAAATCTTAAATGCTCCTTATGGGGGTGTGAGTTCTTGATGTTTGATGAGAG
66 GGCAGCAAACCAATAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCAAGGTTTGATAAGAG
* ** *
5862821 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACAGCCCCCTG
131 ATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCACACAGCCCCCTA
* *
5862886 GCCCCCCCGATCGCCGGAACCCCAATGCCATCAGTCAGGTTCTCCGACGATGCTCCGACGATGGT
196 ACCCCCCCAATCGCCGGAACCCCAATGCCATCAGTCAGGTTCTCCGACGATGCTCCGACGATGGT
* *
5862951 GCCCCGGCGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCCGTCGCAACCCTT
261 GCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCCGTCGCAACCCTC
* * *
5863016 GGTCTGGTCCAATCTTAGACT-GGCAATGAACTCCGTATGCTTAGACTGGTAATGAACTCCATAT
326 GGTCCGGTCCAATCTTAGACTAGG-AATGAACTCCATATGCTTAGACTGGGAATGAACTCCATAT
5863080 GCCT
390 GCCT
*
5863084 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
1 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACT
* *
5863149 GGCAGCAAACCTGGA-AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATAAG
66 GGCAGCAAACC--AATAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCAAGGTTTGATAAG
* *
5863213 GGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGTACATCATGTGCACACACGTCCC
129 AGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCACACA-G-CCC
* * * * ** **
5863278 CC-AACCCCCCCAATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGTGATGCTCCGGTGA
192 CCTAACCCCCCCAATCGCCGGAACCCCAATGCCATCAGTCAGGTTCTCCGACGATGCTCCGACGA
** * * *
5863342 TGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAAC
257 TGGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCCGTCGCAAC
* * *
5863407 CCTCGGTCCGGTTCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTA
322 CCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCA
5863472 TATGCCT
387 TATGCCT
5863479 AAGT
1 AAGT
5863483 CAACCCGTAA
Statistics
Matches: 354, Mismatches: 40, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
393 73 0.21
394 96 0.27
395 178 0.50
396 7 0.02
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.23
Consensus pattern (393 bp):
AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACT
GGCAGCAAACCAATAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCAAGGTTTGATAAGAG
ATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCACACAGCCCCCTA
ACCCCCCCAATCGCCGGAACCCCAATGCCATCAGTCAGGTTCTCCGACGATGCTCCGACGATGGT
GCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCCGTCGCAACCCTC
GGTCCGGTCCAATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATG
CCT
Found at i:5863462 original size:26 final size:26
Alignment explanation
Indices: 5863424--5863476 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5863414 CCGGTTCGAT
5863424 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
5863450 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
5863476 C
1 C
5863477 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:5864354 original size:26 final size:26
Alignment explanation
Indices: 5864316--5864368 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5864306 CTGGTCCGAT
*
5864316 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
5864342 CTTATACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
5864368 C
1 C
5864369 CTAAGTCATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:5865250 original size:26 final size:26
Alignment explanation
Indices: 5865221--5865273 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5865211 CTGGTCCGAT
*
5865221 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
5865247 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
5865273 C
1 C
5865274 CTAAGTCATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:5865515 original size:901 final size:896
Alignment explanation
Indices: 5863084--5865713 Score: 3803
Period size: 901 Copynumber: 2.9 Consensus size: 896
5863074 CCATATGCCT
5863084 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
1 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
5863149 GGCAGCAAACCTGGAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATAAGG
66 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * *
5863214 GATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGTACATCATGTGCACACACGTCCCC
131 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC--CCCC
* * * * * *
5863279 CAACCCCCCCAATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGTGATGCTCCGGTGATG
194 C-CCCCCCCCGATCGTTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGGCGATG
** * *
5863344 GTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCC
258 GTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGTAACCC
* * * *
5863409 TCGGTCCGGTTCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTATA
323 TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATA
* *** * * * *
5863474 TGCCTAAGTCAACCCGTAAAATGAACGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAA
388 TGCCTAAGTCATCCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAA
* *** * * *
5863539 GTCGAGGATCGGTTGGGTCCCCCTCTGTGTGCTGCCAATCTTGCTGCCCCAACCCTCAATCCGGT
453 GCCG-GGATCGGCAAGGT-CCCCTCTGTGTGCTGTCGATCTTGCTGCCGCAA-CCTCAATCCGGT
** * * *
5863604 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-A--AGCGGGC-G-
515 CAAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCGACCGACGAAACGAGCAGTGGGCGGC
* * * *
5863664 GGCGGGCACTACTTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATATGGTGGTAAGTGG
580 GGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGCAAGTGG
* ** *
5863729 GTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAAT
645 GTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
5863794 GGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCGTTTTCTATTTTTCATGA-TTT
710 GGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTT
* * * *
5863858 TGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCCA-AATGAGTTTTT-GCCCCAAATTT
775 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT-CAGAAAGA-TTTTTGGCCCCAAACTT
*
5863921 GCTAGACGTGATCCTTGTACTTTTTTTCACATTCACAAAAAAATTCAGCTAAAAACTCG
838 GCTAGACGTGATCCTTGTACTTTTTTTCACATGCACAAAAAAATTCAGCTAAAAACTCG
5863980 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
1 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
5864045 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
66 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * *
5864110 GATAGGGGGCGAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-GCCCCC
131 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* * * * ** *
5864174 ACCCTCCGATCATCGGAATGCCAATGCCGTCGGTCAGGTTCTCC-AGTGATGCTCCGACGATGGT
196 CCCCCCCGATCGTTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA-TGATGCTCCGGCGATGGT
* * * * *
5864238 GCCCCGACGAAGAAAAATACGACACCAGCACATGCCCAAG-CTCAGAATGTGCTACCATAACCCT
260 GCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCT-AGCATGTGCTGCCGTAACCCT
* * *
5864302 CGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTATACTAGGAATGAACTCCGTAT
324 CGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATAT
* *
5864367 GCCTAAGTCATCCCACGAAACGAGCGTGTGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAG
389 GCCTAAGTCATCCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAG
** * * * *
5864432 CCCGGGATCGGCCTGGTCCCCCTCTATGTGCTGTTGATCCTGCTGCCGCATCCCTCAATCCGGTC
454 -CCGGGATCGGCAAGGT-CCCCTCTGTGTGCTGTCGATCTTGCTGCCGCA-ACCTCAATCCGGTC
* * * *
5864497 CAATCTTAGATTGGGAATGAACTTCGTATGCCTAAGACGATCGACGAAACGAGCAGTGGGCGGGC
516 AAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCGACCGACGAAACGAGCAGTGGGC-GGC
* * *
5864562 GGGCGGGCACTATGTCGGCCAGAGAGATATGATGCGCAAGCCGTGGATCGATAGGGTGGCAAGTG
580 -GGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGCAAGTG
*
5864627 GGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACGA
644 GGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
5864692 TAGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGATGACTCCTTTTCTATTTTTCATGATTT
709 TGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGATGACTCGTTTTCTATTTTTCATGATTT
*
5864757 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTG
774 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAAGATTTTTGGCCCCAAACTTG
* * * ** *
5864822 GTAGACGTGATCCTTTTAGTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCG
839 CTAGACGTGATCCTTGTACTTTTTTTCACATGCACAAAAAAATTCAGCTAAAAACTCG
* *
5864880 AAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACT
1 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
5864945 GGCAGCAAACCTGTAAAATCTCAAAATGCTCTTTAAGGGGGTGGGAGTTCTCGAGGTTTGATGAG
66 GGCAGCAAACCTGTAAAATCTC-AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
5865010 GGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCATATCATGTGCGCACACCCCCC
130 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC
* *
5865075 CCGGCCCCCCCGATCGTTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGAT
194 CC--CCCCCCCGATCGTTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGGCGAT
5865140 GGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGTAACC
257 GGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGTAACC
*
5865205 CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCAT
322 CTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCAT
* *
5865270 ATGCCTAAGTCATCCCACGAAACGAGCGTGCGGG-ACTCAGCCGGCCAGAGGGGCAGGATGCGTA
387 ATGCCTAAGTCATCCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
* * * * * * *** *
5865334 AGCCGTGATCGACAAGGT-CTCTCTGCGTGCTATCGATGCTTGCTGCTGCAACCTTGGTCTGGTC
452 AGCCGGGATCGGCAAGGTCCCCTCTGTGTGCTGTCGAT-CTTGCTGCCGCAACCTCAATCCGGTC
* *
5865398 AAATCTTAGATTAGGAATGCACTCCGTATGCCTAAGCCGACCGACGAAACGAGCAGTGGGCAGGC
516 AAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCGACCGACGAAACGAGCAGTGGGC-GGC
* *
5865463 GGACGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGCAGGTG
580 GG-CGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGCAAGTG
* *
5865528 GGTTTAGGCACATCTTCATATTTCTATGTGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAA
644 GGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
5865593 TGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGATGACTCGGTTTCTATTTTTCATGATTT
709 TGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGATGACTCGTTTTCTATTTTTCATGATTT
* *
5865658 TTGAAACTTTTTAGGGTTCGGGATTTTTTTAAATTTTTTC-GAAAAGATTTTTGGCC
774 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG-AAAGATTTTTGGCC
5865714 TCGACGAAGA
Statistics
Matches: 1548, Mismatches: 162, Indels: 43
0.88 0.09 0.02
Matches are distributed among these distances:
891 1 0.00
892 310 0.20
893 7 0.00
895 6 0.00
896 180 0.12
897 1 0.00
899 181 0.12
900 193 0.12
901 409 0.26
902 10 0.01
903 17 0.01
904 29 0.02
905 201 0.13
906 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
CCCCCCCGATCGTTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTG
CCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGTAACCCTCG
GTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGC
CTAAGTCATCCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC
GGGATCGGCAAGGTCCCCTCTGTGTGCTGTCGATCTTGCTGCCGCAACCTCAATCCGGTCAAATC
TTAGATTGGGAATGAACTCCGTATGCCTAAGCCGACCGACGAAACGAGCAGTGGGCGGCGGCGGG
CACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGCAAGTGGGTTTAG
GCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTAATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAAGATTTTTGGCCCCAAACTTGCTAGACG
TGATCCTTGTACTTTTTTTCACATGCACAAAAAAATTCAGCTAAAAACTCG
Found at i:5866296 original size:184 final size:185
Alignment explanation
Indices: 5865983--5866353 Score: 584
Period size: 184 Copynumber: 2.0 Consensus size: 185
5865973 TCTTAGACAG
** *
5865983 GGAATGAACTCTTTATGCCTAAGCCAACCGACGAAACGAGCAACCGAGCGGGCAGGCGGGCGGGC
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG--A-CGAGCGAGCAGGCGGGCGGGC
* *
5866048 ACTAAGCAGGCCAGAGAGACGGGATGTACAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
63 ACTAAGCAGGCCAGAGAGACGGGATGGACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
5866113 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAC
128 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAC
**
5866171 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-CGAGCGAGTGGGCGGGCGGGCACT
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGACGAGCGAGCAGGCGGGCGGGCACT
* * *
5866235 ACGCCA-GCCAGAGAGACGGGATGGACTAGCCGTGGATCGATAGGGTGGTATGTGGGTTTAGGCA
66 AAG-CAGGCCAGAGAGACGGGATGGACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* *
5866299 CATCTTTATATTTCTGCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAA
130 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
5866354 TGGTCCCTTA
Statistics
Matches: 170, Mismatches: 12, Indels: 6
0.90 0.06 0.03
Matches are distributed among these distances:
184 130 0.76
185 2 0.01
188 38 0.22
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (185 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGACGAGCGAGCAGGCGGGCGGGCACT
AAGCAGGCCAGAGAGACGGGATGGACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAC
Found at i:5867637 original size:26 final size:26
Alignment explanation
Indices: 5867585--5867637 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5867575 CCAGTCTGAT
*
5867585 CTTAGACTGGGAATAAACTCTGAATG
1 CTTAGACTGGGAATAAACTCCGAATG
* *
5867611 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGAATG
5867637 C
1 C
5867638 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGAATG
Found at i:5868444 original size:26 final size:26
Alignment explanation
Indices: 5868394--5868446 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5868384 CCGGTCTGAT
* * *
5868394 CTTAGACTGGGAATGATCTCTGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
5868420 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
5868446 C
1 C
5868447 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:5869312 original size:26 final size:26
Alignment explanation
Indices: 5869283--5869335 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5869273 CCGGTCCGAT
* *
5869283 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
5869309 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
5869335 C
1 C
5869336 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:5871348 original size:720 final size:705
Alignment explanation
Indices: 5869971--5871326 Score: 1933
Period size: 720 Copynumber: 1.9 Consensus size: 705
5869961 TATGCCAGCT
* *
5869971 AGAGAGATGGGATCCGCAAGTCGTGGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATA
1 AGAGAGACGGGATCCGCAAGCCGTGGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATA
** **
5870036 TTTCTGTGTTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAACCTTCACG
66 TTTCTGCATGACAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAACCTTCACG
5870101 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCG
131 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCG
** * *
5870166 AGATTTTTTAAATTTTTTTTGGGAGGCGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAAT
196 AGATTTTTTAAATTTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAAT
*
5870231 TTTTTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGAAAATGATTTTGTGACCATTTG
261 TTTTTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGAAAATGATTTTGTGACCATTTG
* * *
5870296 AAAAAAGTGTCCCCATTCCCCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTGAAA
326 AAAAAAGTGTCCCCATT-CCCAGACACTTTAATGGCTACTGGCAGCAAACCTCTAAAATCTCAAA
*
5870361 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
390 TGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* *
5870426 GTACCAGCACCCATTGCACATCATGTGCGCACATCCCCTCGGCCCCCTCGATCATCGGAACCCAA
455 GTA-CAGCACCCATCGCACATCA-GTGCGCACA---------CACCCTCGATCATCGGAACCCAA
** *
5870491 TACCGTCGGTCAGGTTCCCCGGCGATGCTCCGACGATGGTGCCTCGATGAAGAAAAATACAGCAC
509 TACCG-CAATCAGGTT--CCGGCAATGCTCCGACGATGGTGCCTCGATGAAGAAAAATACAGCAC
* * *
5870556 CAGCACATGCCCGAGCCCAGCAAGTGCTACCGCAACGCTTGGTCCGGTCCGATCTTAGATTGGGA
571 CAGCACATGCCCGAGCCCAGCAAGTGCTACCGCAACGCCTCGTCCGATCCGATCTTAGATTGGGA
5870621 ATGAACTCCATATATTTAAGTCAACCCACGAAATGAGTGTGCGGGCGGGCGGACGGGCAGTACAC
636 ATGAACTCCATATATTTAAGTCAACCCACGAAATGAGTGTGCGGGCGGGCGGACGGGCAGTACAC
5870686 CGGCC
701 CGGCC
* *
5870691 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
1 AGAGAGACGGGATCCGCAAGCCGTGGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATA
**
5870756 TTTCTGCATGACAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAGGCCTTCACG
66 TTTCTGCATGACAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAACCTTCACG
* *
5870821 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTG
131 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCG
*
5870886 GGATTTTTTTAAA-TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-A
196 AGA-TTTTTTAAATTTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAA
*
5870949 TTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCAAAGTGTAAAA-GATTTTGTGACCAT
260 TTTTT-TTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTG-AAAATGATTTTGTGACCAT
*
5871013 TTGAAAAAAGTGTCCCCATT-TCAGACACTTTAATGGCTACTGGCAGCAAACCTCTAAAATCTCA
323 TTGAAAAAAGTGTCCCCATTCCCAGACACTTTAATGGCTACTGGCAGCAAACCTCTAAAATCTCA
* *
5871077 AATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGTCAATATAAGTGCC
388 AATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
*
5871142 GAA-T-CAGCACCCATCGCACATCA-TGCG-ACA-ACCC-CGATCAT-GGAAACCCAA-GCTC-C
453 -AAGTACAGCACCCATCGCACATCAGTGCGCACACACCCTCGATCATCGG-AACCCAATAC-CGC
* * * * *
5871198 AATCA-GTT-CTG-AATGCTCC-A-GTATGGTGCC-CGGTGAAGAAAAATGCGGCACTAGCACAT
515 AATCAGGTTCCGGCAATGCTCCGACG-ATGGTGCCTCGATGAAGAAAAATACAGCACCAGCACAT
* * * *
5871257 TCCCGAG-GCAGCATGTGCCTACCAGCAACGCCTCGTCCTGATCCGATCTCTTAGACTGGGAATG
579 GCCCGAGCCCAGCAAGTG-CTACC-GCAACGCCTCGTCC-GATCCGA--TCTTAGATTGGGAATG
5871321 AACTCC
639 AACTCC
5871327 GTATGCTTAG
Statistics
Matches: 580, Mismatches: 44, Indels: 47
0.86 0.07 0.07
Matches are distributed among these distances:
692 8 0.01
693 37 0.06
694 21 0.04
695 13 0.02
696 2 0.00
697 21 0.04
699 3 0.01
700 4 0.01
701 3 0.01
702 15 0.03
703 3 0.01
713 3 0.01
714 4 0.01
716 18 0.03
718 103 0.18
719 8 0.01
720 301 0.52
721 13 0.02
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.28
Consensus pattern (705 bp):
AGAGAGACGGGATCCGCAAGCCGTGGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATA
TTTCTGCATGACAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAACCTTCACG
TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCG
AGATTTTTTAAATTTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAAT
TTTTTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGAAAATGATTTTGTGACCATTTG
AAAAAAGTGTCCCCATTCCCAGACACTTTAATGGCTACTGGCAGCAAACCTCTAAAATCTCAAAT
GCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
TACAGCACCCATCGCACATCAGTGCGCACACACCCTCGATCATCGGAACCCAATACCGCAATCAG
GTTCCGGCAATGCTCCGACGATGGTGCCTCGATGAAGAAAAATACAGCACCAGCACATGCCCGAG
CCCAGCAAGTGCTACCGCAACGCCTCGTCCGATCCGATCTTAGATTGGGAATGAACTCCATATAT
TTAAGTCAACCCACGAAATGAGTGTGCGGGCGGGCGGACGGGCAGTACACCGGCC
Found at i:5872213 original size:26 final size:26
Alignment explanation
Indices: 5872184--5872233 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
5872174 GTCCGATCTG
5872184 AGACTGGGAATGAACTCCGCATGCTT
1 AGACTGGGAATGAACTCCGCATGCTT
*
5872210 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGCATGC
5872234 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGCATGCTT
Found at i:5873980 original size:26 final size:26
Alignment explanation
Indices: 5873951--5874003 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5873941 CCAGTCCGAT
* * *
5873951 CTTAGATTGGGATTGAACTCCATATG
1 CTTAGACTGGGAATGAACCCCATATG
*
5873977 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCATATG
5874003 C
1 C
5874004 CTAAGCCGGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCATATG
Found at i:5874600 original size:875 final size:874
Alignment explanation
Indices: 5870601--5877474 Score: 7023
Period size: 837 Copynumber: 7.9 Consensus size: 874
5870591 CGCTTGGTCC
* * * *** * * * * *
5870601 GGTCCGATCTTAGATTGGGAATGAACTCCATATATTTAAGTCAACCCACGAAATGAGTGTGCGGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG
* *
5870666 C-GGGCGGACGGGCAGTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
65 CAGGG-GG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* *
5870730 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGACAATGCCATTTTTATGGCTTGTAAATTC
128 TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
*
5870795 ATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
193 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * * *
5870860 TGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCA
258 TGATTTTTGAAAATTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* *
5870925 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCA-
323 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT-AG
*
5870989 AAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
387 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
5871054 GGCAGCAAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
452 GGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
* *
5871119 GATAGGGGGTCAATATAAGTGCCGAA-T--CAGCACCCATCGCACATCA--TGCG-ACA------
517 GATAGGGGGCCAATATAAGGGCC-AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCG
* * * ** *
5871172 ---ACCCCGATCAT-GGAAACCCAA-G-C-TCCAATCA-G-T-TCT-G-AATGCTCC-A-GTATG
581 GCCCCCCCGATCGTCGGAACCCCAATGCCGT-CGGTCAGGTTCTCTGGCGATGCTCCGACG-ATG
* * * * * * *
5871223 GTG-CCCGGTGAAGAAAAATGCGGCACTAGCACATTCCCGAG-GCAGCATGTGCCTACCAGCAAC
644 GTGCCCCGATGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTG-CTGCC-GCAAC
*
5871286 GCCTC-GTCCTGATCCGATCTCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GG--TGAAC
707 -CCTCGGTCCAG-TCCGA--TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * ** * **
5871347 TCTGTATGCCTAAGTTACAAAAAGGTCGGGCGCTCAGTGGCAGAAACAGGATGC-CAAGCCGGGG
768 TCCGTATGCCTAAG--AC--ACA-G-C-CG-GC-CA---G-AGAGGCGGGATGCGCAAGCTAGGG
* * * * * * * ** *
5871411 ATCGGTC-CGTGACCCCT-TGAAG-G--GCCAATGCTTGCTTGCTGCAAAGCT--ATCG
820 ATCGGTCGGGT-CCCCCTCT-ACGTGCTGTCGAT-CCTGC-TGCCGCAACCCTCGATCT
* * * * * *
5871463 GGTCTGATCTTAGCATTGGAAATTGAA-TGCTGTATGCATAAGATCAACCTGACGAATCCAGAG-
1 GGTCTGATCTTAG-ACTGGGAA-TGAACTCCT-TATGCCTAAG-CCAACC-GACGAA-AC-GAGC
* * * *
5871526 GGGCGAGCAGTGCGGGCGGGCAGTACGCCGG-CAGAG-GACGGGATACGCAAGCCATGGATCAAT
59 GGGCG-GCAG-G-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* * * *
5871589 AGGGTGGTAGGTGGGATTAGGCACATCTTCATATTTTTGCATGCCAATTCCATTTTTATGGCTTG
121 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTG
* * *
5871654 AAAATTCATACAATGGTCCTTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTA
186 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * *
5871719 TTTTTCACGA-TTTTCAAAACTTTTTGCAATTCGGGATTTTTTAAAATTTTTTCGGAAGG-GTTT
251 TTTTTCATGATTTTTGAAAA-TTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* *
5871782 TGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAA
315 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * *
5871847 AAACTAAAAGTGTACAAGATTCTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGT
380 AAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
5871912 GGCTACTCGCAGCAAACTTGTTAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
445 GGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
* * * **
5871977 GATGAGGTATAAGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCATACATCATGTGCGCACA
510 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* *
5872042 CCCCCCGGCCCCCTCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTC---C---G----G-
575 -CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGA
* * *
5872096 CGATGGTGCCCCGATGAAGAAAAATACAGCACCAGCAAATGCTCGAGCCCAGCATGTGCTGCCAC
639 CGATGGTGCCCCGATGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * *
5872161 AACCCTTGGT-CACGTCCGATCTGAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAAC
704 AACCCTCGGTCCA-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
5872225 TCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCCCAGTCGGCCAGAGGGGCGGGAT
768 TCCGTATGCCTAAG---A--C-----AC-AGC---C--G-G-CCA----G--AGA--GGCGGGAT
* * * * *
5872290 GCGCAAG-TCGGGGATCGGTTGGGTCCCCCTCTGCATGCTGTCAATCCTGCTGCCGCAACCCAT-
807 GCGCAAGCT-AGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCC-TC
* *
5872353 GCTCC
870 GATCT
* ** * * * *
5872358 AGTCCAATCTTAGATTGGGAATGAACT-CTGTATGCCTAAGCCAACCGAGGAAACGAGCTGACGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCT-TATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
* * * ** * *
5872422 --GCGGGTGGGCACTACGCCAGCCAGAGAGACGGGATGCAAAAGCAGTGGATCGACAGGGTGGTA
65 CAGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
5872485 GGTGGGTTTAGGCACCTCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCAT
130 GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * *
5872550 ACAATGGTGCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTGCACG
195 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* * * *
5872615 ATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTCAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
260 ATTTTTGAAAATTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * *
5872680 CTTGGTAGAC-TGGATCCTTGTATTTTTTTTGGCATGGACAAAAAAATTCAGCAAAAAACTAGAA
325 CTTGGTAGACGT-GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAA
* * * *
5872744 GTGTTCAAGATTTTGTAACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAGTGGCTACTGG
389 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
5872809 CAGCAAACTTGTTAAATCTCAAATGCTCTTTAAGGGGGTGTTAGTTCT-AGAGGTTTGACGAGGG
454 CAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA-AGGTTTGATGAGGG
* * *
5872873 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAATTGCATATCATGTGCACACACCCCCCG
518 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC-ATCGCACATCATGTGCGCACA-CCCCCG
* * *** * * *
5872938 ACCCCCCCGATCATCGGAACCCCAATGCTACCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGT
581 GCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGT
** * *
5873003 GCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTC
646 GCCCCGATGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
** * * ***** * **
5873068 GGT-TTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAAC-GAGC
711 GGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATG-CTTAGACTGGGAAT-GAACTCCG-
**** * * * * ** **
5873131 T-TGCGGGTG-CTCAACCGACCAGAG-GGCCGAGATGCGCAAGCCGGGGATCGACCGGGTCCCCC
772 TATGCCTAAGACACAGCCGGCCAGAGAGG-CGGGATGCGCAAGCTAGGGATCGGTCGGGTCCCCC
* ** * *
5873193 TCTAAGTGCTACCGATCCTGCTGCCGCAACCCTTGGTCT
836 TCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCT
* * * * *
5873232 GGTCCGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAACCAACAAAACGAGC--G-GGC
1 GGTCTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGC
* * * *
5873294 ---GGGCGGGCACTACGTCGGCCAGAGAGACGGGATTCGCAGGCCATGGATCGATAGGGTGGTAG
66 AGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
5873356 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
131 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * *
5873421 CAATGGTCCCTTAAGACTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTGCACGA
196 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * *
5873486 TTTTTGAAACTTTTTACAGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAG-TTTGGCCCCAAAC
261 TTTTTGAAAATTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * * *
5873550 TTGGTAGAC-TGAATCCTTGTATTTTTTTTGGCATGGACAAAAAAATTCAACAAAAAACTATAAG
326 TTGGTAGACGTG-ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAAG
5873614 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
390 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
5873679 AGCAAACCTGTAAAATCCCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
455 AGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
*
5873744 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCATACCCCCCTCGG
520 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC--ACACCCC-CGG
* * *
5873809 CCCCCCCGATCGTCGGAACCCCAATGTCATCGGTCAGGTTCTCTGGCGACGCTCCGACGATGGTG
582 CCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTG
* * * * *
5873874 CCCCGACGAAGAAAAATGC-GACGCCAGCACATGCCCGAGCCCATCATGTGCTGTCGCAACCCTC
647 CCCCGATGAAGAAAAATACAG-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * *
5873938 GGTCCAGTCCGATCTTAGATTGGGATTGAACTCCATATGCTTAGACTGGGAATGAACCCCGTATG
711 GGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* *
5874003 CCTAAG-C-CGGCCGGCCAGAGAGGCGGGATGCGCAAGCTAGGGATAGGTCGGGTCCCCCTCTAC
776 CCTAAGACACAGCCGGCCAGAGAGGCGGGATGCGCAAGCTAGGGATCGGTCGGGTCCCCCTCTAC
5874066 GTGCTGTCGATCCTGCTGCCGCAACCCTCGATCT
841 GTGCTGTCGATCCTGCTGCCGCAACCCTCGATCT
* * * *
5874100 GATCTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAATCGATGAAACGAGTGGGCGGC
1 GGTCTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG-
* * * * *
5874165 CAGGGGGCGGGCACTACACCAGCTAGAGAGACGGCATGCGCAAGCCGTGGATCGGTAGGGTGGTA
65 CAGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
5874230 GGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAATGCCATTTTTGTGGCTTGTAAATTCAT
130 GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
5874295 ACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATG
195 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
*
5874360 ATTTTTGAAAATTTTTGCAGTTCGGGATTTTTGAAAATATTTTT-GGAAGGAGTTTTGGCCCCAA
260 ATTTTTGAAAATTTTTGCAGTTCGGGATTTTTTAAAAT-TTTTTCGGAAGGAGTTTTGGCCCCAA
* * * *
5874424 ACTTCGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTGGAA
324 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAA
*
5874489 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGG
389 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
5874554 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCCAGGTTTGATGAGGGA
454 CAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
* * * ** *
5874618 TAGGGGGCCAATATATGGTCAAAGTACCAGCACCCATCGCACATCATGTATGCACACCTCTCTGG
519 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-C-CCGG
* * *
5874683 CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG
582 CCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTG
* * * * * *
5874748 CCCTGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCTAGCAAGTGCTGCCGCCACCCTCG
647 CCCCGATGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
** * * * *
5874813 GTCTGGTCCGATCTTAGACTGGGAATGAACT-TGTATGCCTA-A----G--TCAACTCACGAAAT
712 GTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC-CG-TA-
* * * * * * * * *
5874870 TAGCATACGGGCGCTCAGCAGGCCAAAGAGGCGGGATGCGAAAGC-CGAGGATCGGTCTGGTCCC
774 T-GCCTA--AG-ACACAGCCGGCCAGAGAGGCGGGATGCGCAAGCTAG-GGATCGGTCGGGTCCC
* * * *
5874934 CCTCTTCATGCTGTCGATCCTGCTGTCGCAACCCTCGGT-T
834 CCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCT
* * * *
5874974 GGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGCCAG
1 -GGTCTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAACCGACGAAACGAGCGGGC-G
* ** *
5875039 G-TGGGCAGGCGGGCACTACGCCGATCAGAGAGACGGGATGCGCAAGCCGTGGATCGATATGGTG
64 GCAGGG--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * * * * *
5875103 GTAGGTGGGTTTAGGCACATCTTCATATTTATGCATGTCGATGTCATTTTTATGCCTTGTAAATT
127 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATT
* * *
5875168 AATAAAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG--------TTTTC
192 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
5875225 --------T----ATTTTT-CA---C--G----------A--TTTTC-GAAGGAGTTTTGGCCCC
257 ATGATTTTTGAAAATTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
*
5875259 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAAG-TAAAAACTG
322 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC-AGCTAAAAACTA
* * *
5875323 GAAGTGTACAAGATTTTCTAACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTAC
386 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * *
5875388 TGGCAACAAACATGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-CTGAGGTTTGATGT
451 TGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-AAGGTTTGATGA
* *
5875452 TGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGGACATCATGTGCGCACACCCCC
515 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * *
5875517 TGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGACGCTCTGACGATG
580 -GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATG
* * * *
5875582 GTGCCCCGAAGAAGAAAAATACAGCACCAGCACATGCCCAAGCCCAGCACGTGCTGTCGCAACCC
644 GTGCCCCGATGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * * * *** *
5875647 TCGGTCCGGT-CGATCTTAGACTGTGAATGAACTCCGTATGCCTAAGTCAT-CCCATGAA--ACG
709 TCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG-CTTAGAC-TGGGAATGAACTCCG
** * * * * ** *
5875708 GGTG--TACGAGCACTCAGCCGGCAAGAGGGGTGGGATGCGTGAGTCGAGGG-TCGGTCGGGTCC
772 TATGCCTA--AG-ACACAGCCGGCCAGAGAGGCGGGATGCGCAAG-CTAGGGATCGGTCGGGTCC
* * * * * * *
5875770 CCCTCTGCATGCTGCCAATCCTGCTGCCACAACCCTCGGTCC
833 CCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCT
** * *
5875812 GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG
* * * *
5875877 CAGGCAGACGGGCAGTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
65 CAGG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
** *
5875942 AGGTTAGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGC---T---TT--
129 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
5875999 TA-AAT--T--C---A---TTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCAT
194 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* **
5876053 GATTTTTGAAAATTTTTGC-GATTCAGGATTTTTTAAAATTTTTTAAGAAGGAGTTTTGGCCCCA
259 GATTTTTGAAAATTTTTGCAG-TTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* * *
5876117 AACTTGGTAAACGTGATCCTTGTATTTTTGTTGGCATGGACAAAAAAATTCAGCTAAAAACTCGA
323 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGA
5876182 AGTGTACAAGATTTTGTGACCATTTGAAAATAA-TGTCCCCATTTCAGACACTTTAATGGCTACT
388 AGTGTACAAGATTTTGTGACCATTTGAAAA-AAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
5876246 GGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTAGTTCTCGAGGTTTCATGAGG
452 GGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
*
5876311 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTCCGCACACCCCCTG
517 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-G
* * * * * *
5876376 GCCCCCCCGATCGCCGAAACCCCAATGCCGTCGATCAGGTTCTCCGGTGATGCTCCGATGATGGT
581 GCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGT
* * ** * * * *
5876441 ACCTCGATGAAGAAAAATATGGTACCAGCACATGCCCGAGCCCAGTATGTGCTGCCGTAGCCCTC
646 GCCCCGATGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* *
5876506 GGTCCCA-TCCGATCTTAGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTAT
711 GGT-CCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * *
5876570 GCCTACGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAAAAGG-GTAGGATGCACAA
775 G-C--C-T--A---A-GACAC-AGC---C--G-GC-CA---G----AGAGGCG--GGATGCGCAA
* ** * * * * * *** *
5876634 G-TCGGGGATCGACCGAGTCCCACTCTGCGTGCTGTCGATCCTACAGTTACAACCC-CTAGTCT
813 GCT-AGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGA-TCT
* * * * *
5876696 GGTCTGATCTGAGACTAGGAGATGAACT-CTGTATGCCCTAAGCCAATCGATGAAACGAGCGGAC
1 GGTCTGATCTTAGACTGGGA-ATGAACTCCT-TATG-CCTAAGCCAACCGACGAAACGAGCGGGC
* * *
5876760 GG-ATGAAGCAGACGGGC-CTACGCCGGCCAGAGAGACGGGATGCGCAAGCC-TGGATTGATAGG
63 GGCA-G--G-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* ** **
5876822 GTGGTAGGCTGAGTTTAGGCACATCTTGGTA-TTCTATGTGCCAATG-CA-TTTTATGGCTTGTA
124 GTGGTAGG-TGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTA
*
5876884 AATTCATACAATGGTCCGCTTAAAGCCTTCA-GTGAAGTTTTAATGGCAAGACGACTCGTTTTCT
188 AATTCATACAATGGTCC-CTT-AAGCCTTCACGTGAAG-TTTCATGGCAAGACGACTCGTTTTCT
** ** *
5876948 ATTTTTTCCATGATTTTTGAAAACTTTTTGTGGTTCGACATTTTTTTAAAATTTTTTTTGGAAGG
250 A-TTTTT-CATGATTTTTGAAAA-TTTTTGCAGTTCGGGA-TTTTTTAAAA-TTTTTTCGGAAGG
* * *
5877013 A-TTTTAGCCCC-AACTTGGTAGACGTGAATCCTTGTATTTTTTTTGGCTTGCACAAAAAAATTC
310 AGTTTTGGCCCCAAACTTGGTAGACGTG-ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * *
5877076 AGCTAAAAACTTGAAGTGTAC-AGATTTTGTGACCATTTG-AAAAAGTGTACCCATTTTAGACAC
374 AGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
5877139 TTTAATGGCTACCGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
439 TTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
*
5877204 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATAGCACATCATGTG
504 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * *
5877269 GGCACA------ACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTTAGGTTCTCTGACGATGC
569 CGCACACCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGC
* * * ** *
5877328 TTCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCTTGAGGCCAGCATGTGCT
634 TCCGACGATGGTGCCCCGATGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * * * *
5877393 ACCGTAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAAACTGGG-AT
699 GCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
*
5877457 GAACTCTGTATGCCTAAG
764 GAACTCCGTATGCCTAAG
5877475 TCAACCCACA
Statistics
Matches: 5113, Mismatches: 627, Indels: 518
0.82 0.10 0.08
Matches are distributed among these distances:
818 29 0.01
821 1 0.00
824 1 0.00
826 6 0.00
828 3 0.00
829 2 0.00
831 2 0.00
834 2 0.00
836 23 0.00
837 537 0.11
838 93 0.02
839 3 0.00
840 2 0.00
842 3 0.00
844 1 0.00
845 3 0.00
850 1 0.00
852 1 0.00
854 1 0.00
855 2 0.00
856 13 0.00
857 378 0.07
858 33 0.01
859 4 0.00
860 1 0.00
862 12 0.00
863 9 0.00
864 14 0.00
865 226 0.04
866 199 0.04
867 30 0.01
868 171 0.03
869 258 0.05
870 385 0.08
871 5 0.00
872 4 0.00
873 14 0.00
874 258 0.05
875 461 0.09
876 326 0.06
877 11 0.00
878 32 0.01
879 38 0.01
880 18 0.00
881 10 0.00
882 6 0.00
883 22 0.00
884 73 0.01
885 65 0.01
886 83 0.02
887 201 0.04
888 237 0.05
889 75 0.01
890 5 0.00
891 14 0.00
892 29 0.01
893 28 0.01
894 15 0.00
895 20 0.00
897 2 0.00
898 16 0.00
899 151 0.03
900 97 0.02
901 13 0.00
902 4 0.00
903 6 0.00
904 28 0.01
905 7 0.00
906 163 0.03
907 42 0.01
908 73 0.01
909 12 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (874 bp):
GGTCTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGC
AGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
TTTTTGAAAATTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGGCCCC
CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCC
GATGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
GACACAGCCGGCCAGAGAGGCGGGATGCGCAAGCTAGGGATCGGTCGGGTCCCCCTCTACGTGCT
GTCGATCCTGCTGCCGCAACCCTCGATCT
Found at i:5876548 original size:26 final size:26
Alignment explanation
Indices: 5876519--5876571 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5876509 CCCATCCGAT
5876519 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
5876545 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
5876571 C
1 C
5876572 CTACGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:5877464 original size:25 final size:26
Alignment explanation
Indices: 5877418--5877469 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
5877408 CCAGTCTGAT
*
5877418 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCTGTATG
5877444 CTTAAACTGGG-ATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCTGTATG
5877469 C
1 C
5877470 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCTGTATG
Found at i:5879477 original size:26 final size:26
Alignment explanation
Indices: 5879448--5879501 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
5879438 GGTCTGATCT
*
5879448 TAGACTGGGAATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
5879474 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
5879500 TA
1 TA
5879502 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:5879727 original size:177 final size:180
Alignment explanation
Indices: 5879420--5879814 Score: 510
Period size: 178 Copynumber: 2.2 Consensus size: 180
5879410 CAGCATGTGT
* *
5879420 TACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAGACTGGGAA
1 TACCGCAACCCTCGATCTGGTCTGATCTTAGAC---G--TGAACTCCGTATGCCTAGACTGGGAA
* *
5879485 TGAACTCCGTATGCCTAAGTCAACCCACTAAACAAGCGTGCGGGCGCTCAGTCGACCAAAAGGGC
61 TGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACCAAAAGGGC
* * * * *
5879550 GG-ATGAGCAAGCCTG-GGATCGGTCGGGTCCCCCTCTACGTGCTATCGATCCTGC
126 GGAATGAGCAAGCC-GACGATCGATCAGGTCCCCCTCTACGTGCTACCGATCCTAC
* *
5879604 TACCGCAACCCTCGATCTGGTTTGATCTTAGAC-TGAACTCCGTATGCTTAGACT-GGAATGAAC
1 TACCGCAACCCTCGATCTGGTCTGATCTTAGACGTGAACTCCGTATGCCTAGACTGGGAATGAAC
* * * *
5879667 TTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGAAT
66 TCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACCAAAAGGGCGGAAT
* *
5879732 GAGTAAGCCGACGATCGATCAGGTCCCCCTCTCCGTGCTACCGATCCTAC
131 GAGCAAGCCGACGATCGATCAGGTCCCCCTCTACGTGCTACCGATCCTAC
* * * **
5879782 TATCGCAACCCTCTATCTAGTCCAATCTTAGAC
1 TACCGCAACCCTCGATCTGGTCTGATCTTAGAC
5879815 TGGGAATAAA
Statistics
Matches: 186, Mismatches: 23, Indels: 10
0.85 0.11 0.05
Matches are distributed among these distances:
177 66 0.35
178 89 0.48
184 31 0.17
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.22
Consensus pattern (180 bp):
TACCGCAACCCTCGATCTGGTCTGATCTTAGACGTGAACTCCGTATGCCTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACCAAAAGGGCGGAAT
GAGCAAGCCGACGATCGATCAGGTCCCCCTCTACGTGCTACCGATCCTAC
Found at i:5880565 original size:26 final size:26
Alignment explanation
Indices: 5880529--5880581 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5880519 CCGATCCGAT
* *
5880529 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
5880555 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
5880581 C
1 C
5880582 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:5881461 original size:26 final size:26
Alignment explanation
Indices: 5881423--5881474 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5881413 TGATCCAATT
5881423 TTAGACTGGGAATGAACT-TCGTATGC
1 TTAGACTGGGAATGAACTCT-GTATGC
*
5881449 TTAGACTGTGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCTGTATGC
5881475 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGC
Found at i:5882077 original size:894 final size:892
Alignment explanation
Indices: 5879637--5884122 Score: 6021
Period size: 894 Copynumber: 5.0 Consensus size: 892
5879627 GATCTTAGAC
*
5879637 TGAACTCCGTATGCTTAGACTGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
1 TGAACTCCGTATGCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * ** * * *
5879702 CGGGCGCTCAGCCGGCCAGAAGGGCGGAATGAGTAAGCCGACGATCGATCAGGTCCCCCTCTCCG
66 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCG
* * * * *
5879767 TGCTACCGATCCTACTATCGCAACCCTCTA-TCTAGTCCAATCTTAGACTGGGAATAAACTCCGT
131 TGCTGCCGATCCTGCTATCGCAACCCTC-AGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
** * *
5879831 ATGCCTAAGCTGACAGACGATACGAGCGGGAGGGCGGGCGGGCAGGCGGGCACTAAGCCGGCCAG
195 ATGCCTAAGCCAACCGACGA-A--A-C--GA--GCGGGC--G--GGCGGGCACTACGCCGGCCAG
*
5879896 AGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
248 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* **
5879961 TCTAAGTGCCAATGAAATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
313 TCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
*
5880026 AAGTTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA
378 AAG-TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA
* *
5880091 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCGAAACTTGGTAGACAAGATCCTTGTATTT
442 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
* * *
5880156 TT-TTGGCATGCACAAAAAACTTCAGCTAAAAACTCGATGTATACAAGATTTTGTGACCATTTTA
507 TTGTTGGCATGCACAAAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
5880220 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCACATGC
572 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
5880285 TCTTTAAGGGGGTGTGAGTTGTCGAGGTTTGATGAGGGATAGGGGGCCATTATAAGGGCCAAGTA
637 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * ** * * *
5880350 CCAGCACCCATCGCACATCATGTGCGTACACCCCCCCGGCTGCCCGATCATCGGAACCCGAATAC
702 CCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCAGCCCCCCGATCATCGAAACCCCAATGC
* * *
5880415 CATCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGAGCCCCGACGAAGAAAAATGCGACACCAG
766 CGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
* *
5880480 CACATGACCAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAA
831 CACATGCCCAGCCTAGCATGTGCTGCCGCAACCCTCGGTTCGATCCGATCTTAGACTGGGAA
* * *
5880542 TGAACTTCGTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGT
1 TGAACTCCGTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * * *
5880607 GCGGGCACTTAGCCGACCAGAGGGGTGGGATGCGCAAGCCAGGGATCGGTCGAGTCCCCCTCTGT
65 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGC
** * *
5880672 GTGCTATCGATCCTGCTA-CTACAACCCTCAGTCTGGTCTGATCTTAGACT-GGAATGAACTCCG
130 GTGCTGCCGATCCTGCTATC-GCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCG
* *
5880735 TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGC-ACGTCGGCCAGAGAGACGAGA
194 TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA-CTACGCCGGCCAGAGAGACGGGA
*
5880799 TGCGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
258 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
* * *
5880864 AATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATT
323 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* *
5880929 GCAAGACGACTCGTTTTCTATTTTCCATGATTTTTGAAACTTTTTACGGTTC-AGGATTTTTTGA
388 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAA
* * *
5880993 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTCGACGTGATCCTTGTATTTTTATTGGCAT
452 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCAT
5881058 GCACAAAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
517 GCACAAAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* *
5881123 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCACATGCTCTTTAACGG
582 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
5881188 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCAAATATAAGGGCCAAGTACCAGCACCCA
647 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * ** *
5881253 TCGCACATCATGTGCGCACACCCCCTAGCCTGCCCGATCATCGAAACCGTAATGCCATCGGTCAG
712 TCGCACATCATGTGCGCACACCCCCCAGCC-CCCCGATCATCGAAACCCCAATGCCGTCGGTCAG
* * *
5881318 GTTCTCCGGCAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCAGCAGTACATGCCCA
776 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCA
* * * * *
5881383 GCCCAGCATGTGCTACCGCAACCCTCGGTTTGATCCAATTTTAGACTGGGAA
841 GCCTAGCATGTGCTGCCGCAACCCTCGGTTCGATCCGATCTTAGACTGGGAA
* * * *
5881435 TGAACTTCGTATGCTTAGACTGTGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGTGCGT
1 TGAACTCCGTATGCTTAGACTG-GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * *
5881500 GCGGGTGCTCAACCGGCCAGAGGGGTGGGATACGCAAGCCGGGGATTGGTCGGGTCCCCCTCTGC
65 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGC
* * ** * * *
5881565 GTGCTGTCAATCCTGCTGCCGCAACCCTCAGTCCGATCGGATCTTAGACTGGGAATGAACTCCGT
130 GTGCTGCCGATCCTGCTATCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
** * * *
5881630 ATGCCTAAGAAAACCGACGAAATGAGCGGGCGGGTGGGCACTATGCCGGCCAGAGAGACGGGATG
195 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* * *
5881695 TGCAAGCCGTGGATCGATAGGGTGGTACGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAA
260 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAA
* * * *
5881760 TGCCATTTTTATGGCATGTAAATTCATAGAATGGTACCTTAAGCCTTTACGTGAAGTTTCATGGC
325 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * ** * * * *
5881825 AAGACGGCTCGTTTTTTATTTTTCACAATTTTTGTAACTTTTTACGATTCAAAATTTTTTAAAAT
390 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAT
* * * *
5881890 TTTTTTGGAAGGAATTTTTGCCCCAAACTTGGTAGACATGATCCCTGTATTTTTGTTGGCATGCA
455 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
* *
5881955 CAAAAAACTTCAGTTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCC
520 CAAAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
5882020 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
585 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
5882085 GTGAGTTCTCAAGGTTTGATAAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
650 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
5882150 CACATCATTTGGGCACACCCCCCGGCCCCCC--TAATCGCTAGAACCCCAATGCCGTCGGTCAGG
715 CACATCATGTGCGCACACCCCCCAGCCCCCCGATCATCG--A-AACCCCAATGCCGTCGGTCAGG
* ** * *
5882213 TTCTCCGGTGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCCCATGCCCGA
777 TTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC-A
* * * * * *
5882278 GCCCAGCTTGTGCTGCTGCAACCCTTGG-TCCAGTTCGATCTTAGACTGGGAA
841 GCCTAGCATGTGCTGCCGCAACCCTCGGTTCGA-TCCGATCTTAGACTGGGAA
* *
5882330 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAATGAGCGT
1 TGAACTCCGTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * ** **
5882395 GCGGGTGCTCAGTCGGCCAGAGGGGCGTGATGCGCAAGCCAAGGATCGACCGGGTCCCCCTCTGC
65 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGC
* * * * *
5882460 GTGCTGCCGATCCTGCTGTCGCAACCCTCTGTTTGGTCCAATCTTAGACTAGGAATGAACTCCGT
130 GTGCTGCCGATCCTGCTATCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * * *
5882525 ATGCCTAAGCCAACCGACGAAAGGAGCGGGCGGGCAGGCACTACGTCGACCAGAGGGACGGGATG
195 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* * *
5882590 TGC-AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTGCGTGCCAA
260 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAA
* *
5882654 TGCCATTTTTATGGCTCGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
325 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* ** * *
5882719 AAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGACTTTTTAAAAT
390 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAT
* * * *
5882784 TTTTTCGGAAGGAGTTTTCGCTCCAAACTTGGTAGACAAGATCCTTGTATTTTTTTTGGCATGCA
455 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
* * * *
5882849 CAAAACAA-ATCAGCTCAAAAC-CTGAAGTGTATAAGATTTTGTGACCATTTCAAAAAAAGTGTC
520 CAAAA-AACTTCAGCTAAAAACTC-GAAGTGTACAAGATTTTGTGACCATTT-GAAAAAAGTGTC
* *
5882912 CCGATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
582 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
5882977 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAGTATGAA-GGCCAAGTACCAGCACCC
647 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT-AAGGGCCAAGTACCAGCACCC
* * * * * * *
5883041 ATCACACATCATGTGTGCACACCCCCCAGCCCCCCCGATCATCGGAACCACAATACCGCCGATCA
711 ATCGCACATCATGTGCGCACACCCCCCAG-CCCCCCGATCATCGAAACCCCAATGCCGTCGGTCA
* *
5883106 GGTTCT-C--C-A------G-CGATGGTGCCCCAGA-GAAGAAAAATGAGGCACCAGCACTTGCC
775 GGTTCTCCGGCGATGCTCCGACGATGGTGCCCC-GACGAAGAAAAATGCGGCACCAGCACATGCC
* * * * *
5883159 CGAGCCTTGCATGTGCTGCCACAACCCTCGGTCCGATTCGATCTTAGACTGGTAA
839 C-AGCCTAGCATGTGCTGCCGCAACCCTCGGTTCGATCCGATCTTAGACTGGGAA
* * * *
5883214 TAAACTCCATATGCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGT
1 TGAACTCCGTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * *
5883279 GCAGGCGCTCAGTCGGCCAAAGGGGCAGGATGCGCAAGCCGGGGATC-GACTGGGTCCCCCTTTG
65 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTG
* * * **
5883343 CGTGCTGCTGATCCTGCTATCGTAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCG
129 CGTGCTGCCGATCCTGCTATCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCG
*
5883408 TATGCCTAAGCCAATCGACGAAACGAGCGGGCTGGCGGGTGGCCGGGCACTACGCCGGCCAGA-A
194 TATGCCTAAGCCAACCGACGAAACGAGC--G--GGC--G-GG-CGGGCACTACGCCGGCCAGAGA
* * *
5883472 GACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTATAGGCACATCCTCATATTTCT
251 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* * *
5883537 ATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTCAAG
316 ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * *
5883602 TTTCATGGCAAGACGACTC-CTTTCTTATTTTTCATGATTTTTAAAAGTTTTTACGGTTCGAGAT
381 TTTCATGGCAAGACGACTCGTTTTC-TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGAT
* * * *
5883666 TTTTTACAACTTTTTT-GGAAGGATTTTTGGCCCTAAACTTGGTAGACATGATCCTTCTATTTTT
445 TTTTTA-AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT
* *
5883730 GTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
509 GTTGGCATGCACAAAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* * *
5883795 AAAGTGTCCCCATTTAAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTT
574 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* *
5883860 TTTAAGAGGCTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
639 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * * *
5883925 AGCACCCATCGCACAT-ATTGTGTGCACACCCCCCGGTCCCCCCGATCACCGGAACCCCAATGCT
704 AGCACCCATCGCACATCA-TGTGCGCACACCCCCCAG-CCCCCCGATCATCGAAACCCCAATGCC
* * * * * *
5883989 GCCGATCAGGTTCTCCAGCGATGCTCTGGCGATGGTG-CCCTAGCGAAGAAAAATGCGGCACCAG
767 GTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAG
* * * * *
5884053 CACATGCACGAGCCTAGCATGTGCTACCGTAACCCTCAG-TCCAGTCCGATCTTAGACTGGGAA
831 CACATGC-CCAGCCTAGCATGTGCTGCCGCAACCCTCGGTTCGA-TCCGATCTTAGACTGGGAA
5884116 TGAACTC
1 TGAACTC
5884123 TGCATGCCTA
Statistics
Matches: 3170, Mismatches: 353, Indels: 119
0.87 0.10 0.03
Matches are distributed among these distances:
883 1 0.00
884 274 0.09
885 4 0.00
886 1 0.00
888 3 0.00
890 4 0.00
891 217 0.07
892 404 0.13
893 659 0.21
894 859 0.27
895 450 0.14
896 9 0.00
897 6 0.00
898 5 0.00
899 2 0.00
900 1 0.00
901 7 0.00
902 81 0.03
903 1 0.00
904 1 0.00
905 52 0.02
906 129 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
TGAACTCCGTATGCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCG
TGCTGCCGATCCTGCTATCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATT
TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAC
AAAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
ACATCATGTGCGCACACCCCCCAGCCCCCCGATCATCGAAACCCCAATGCCGTCGGTCAGGTTCT
CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAGCCTA
GCATGTGCTGCCGCAACCCTCGGTTCGATCCGATCTTAGACTGGGAA
Found at i:5882353 original size:26 final size:26
Alignment explanation
Indices: 5882317--5882369 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5882307 CCAGTTCGAT
5882317 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5882343 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5882369 C
1 C
5882370 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5883245 original size:26 final size:26
Alignment explanation
Indices: 5883201--5883253 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
5883191 CCGATTCGAT
5883201 CTTAGACTGGTAATAAACTCCATATG
1 CTTAGACTGGTAATAAACTCCATATG
*
5883227 CTTAGACTAGG-AATGAACTCCATATG
1 CTTAGACT-GGTAATAAACTCCATATG
5883253 C
1 C
5883254 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGTAATAAACTCCATATG
Found at i:5885358 original size:717 final size:711
Alignment explanation
Indices: 5883357--5885556 Score: 3113
Period size: 711 Copynumber: 3.1 Consensus size: 711
5883347 CTGCTGATCC
* * *
5883357 TGCTATCGTAACCCTCGGT-CTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTACCGTAACCCTCGATCCT-GTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
5883421 ATCGACGAAACGAGCGGGCTGGCGGGTGGCCGGGCACTACG-CCGGCCAGA-AGACGGGATGCGC
65 ACCGACGAAACGAGC-GGC-GGCGGGTGGGCGGGCACT--GTCCGGCCAGAGAGACGGGATGCGC
* * * *
5883484 AAGCTGTGGATCGATAGGGTGGTAGGTGGGTATAGGCACATCCTCATATTTCTAT-GTGCCAATG
126 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCT-TCGTGCCAATG
* *
5883548 CCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAA
190 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
5883613 GACGACTCCTTTCTTATTTTTCATGATTTTTAAAAGTTTTTACGGTTCGAGATTTTTTACAACTT
255 GACGACTCGTTTC-TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTA-AA-TT
* * * * *
5883678 TTTTGGAAGGATTTTTGGCCCTAAACTTGGTAGACATGATCCTTCTATTTTTGTTGGTATGCACA
317 TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
5883743 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
382 AAAAAA-TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * * *
5883808 TTAAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGAGGCTGT
446 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
5883873 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
511 GAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* ** * * *
5883938 CAT-ATTGTGTGCACACCCCCCGGTCCCCC-CGATCACCGGAACCCCAATGCTGCCGATCAGGTT
576 CATCA-TGTGCGCACACCCCCCGG-CCCCCTCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTT
* * * * * * *
5884001 CTCCAGCGATGCTCTGGCGATGGTG-CCCTAGCGAAGAAAAATGCGGCACCAGCACATGCACGAG
639 CTCCGGCGATGCTCCGACGATGGTGCCCCGA-TGAAGAAAAATGTGGCACCAGCACATGCCCGAG
*
5884065 CCTAGCATG
703 CCCAGCATG
* * * *
5884074 TGCTACCGTAACCCTC-AGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGCATGCCTAAGCCA
1 TGCTACCGTAACCCTCGA-TCCTGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
5884138 ACCGATGAAACGAGC-G-GGCGGGTGAGC--ACTAC-GT-CGGCCAGAGAGATGGGATGCGCAAG
65 ACCGACGAAACGAGCGGCGGCGGGTGGGCGGGC-ACTGTCCGGCCAGAGAGACGGGATGCGCAAG
* *
5884197 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTTCATGACAATGCCAT
129 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTTCGTGCCAATGCCAT
*
5884262 TTTTATGGCTTGTAAATTCGTTACAATGCGTCCCTTAAGCCTTC-CGTGAAGTTTCATGGCAAGA
194 TTTTATGGCTTGTAAATTC-ATACAATG-GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
5884326 CGGCTCGTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGAATTTTTTTAAAATTTTT
257 CGACTCGTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTT-AAA-TTTT
* * * * *
5884391 TTGGAAGGAGTTTTCGCCTCAAACTTTGCAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
319 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
5884456 AACAATCAGCTAAAAATTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
384 AA-AATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
5884521 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
448 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
5884586 GTTTTTGAGGTTTGATGAGAGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACA
513 GTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*
5884651 TCATGTGCGCACACCCCCCGGCCCCCTCGATCGTCGGAACCCTAATGCCGCAGGTCAGGTTCTCC
578 TCATGTGCGCACACCCCCCGGCCCCCTCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCC
*
5884716 GGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAAGGTGGCACCAGCACATGCCCGAGCCCAG
643 GGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
5884781 CATG
708 CATG
* * *
5884785 TGCTACCGTAACCCTCGAT-TTGTTTCGATCTTAGACTGGAAATGAACTTCGTATGCCTAAGCCA
1 TGCTACCGTAACCCTCGATCCTG-TTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
5884849 ACCGACGAAACGAGCGAGCAGGCGGGCGGGCGGGCACTGTACCGGCCAGAGAGACGGGATGCACA
65 ACCGACGAAACGAGCG-GC-GGCGGGTGGGCGGGCACTGT-CCGGCCAGAGAGACGGGATGCGCA
* * *
5884914 AGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGTAAATCTTCATATTTCTTCGTGCCGATGCC
127 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTTCGTGCCAATGCC
*
5884979 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGA
192 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
5885044 TGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAATTTCAT
257 CGACTCG-TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAATTT--T
** * *
5885109 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCATAAA
319 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
5885174 AAAATCAGCTAAAAACTCGACGTGAACAAGATTTTGTGACCATTTGAATAAAGTGTCCCCATTTC
384 AAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
5885239 AGACACTTTAATGGCTACTGGTAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
449 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
5885304 TTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCACAT
514 TTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
5885369 CATGTGCACACA-CCCTCGGCCCCCTCGATCGTCGGAACCCTAATGCCACCGGTCAGGTTCTCCG
579 CATGTGCGCACACCCCCCGGCCCCCTCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCG
** * * * *
5885433 ATGATGCACCGACGATGGTGCCTCGATGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGG
644 GCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
5885498 ATG
709 ATG
* *
5885501 TGCTACCGTAACCATCGAT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 TGCTACCGTAACCCTCGATCCTGTTC-GATCTTAGACTGGGAATGAACTCCGTATGC
5885557 TTAGACTGGG
Statistics
Matches: 1321, Mismatches: 132, Indels: 61
0.87 0.09 0.04
Matches are distributed among these distances:
709 10 0.01
710 129 0.10
711 454 0.34
712 26 0.02
713 10 0.01
715 12 0.01
716 163 0.12
717 280 0.21
718 97 0.07
719 140 0.11
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (711 bp):
TGCTACCGTAACCCTCGATCCTGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGCGGCGGGTGGGCGGGCACTGTCCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTTCGTGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAATTTTTTGGAAG
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
GGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCGGCCCCCTCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGGCGATGC
TCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
Found at i:5885566 original size:26 final size:26
Alignment explanation
Indices: 5885530--5885582 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5885520 CTGGTCTGAT
5885530 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5885556 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5885582 C
1 C
5885583 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5887559 original size:717 final size:716
Alignment explanation
Indices: 5885972--5887960 Score: 2989
Period size: 717 Copynumber: 2.8 Consensus size: 716
5885962 ACGAAACGGG
* * *
5885972 CGGGCAGGCACTACGCCGGCCAGAGAGAGGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
1 CGGGCGGGCACTGCGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
5886037 GGGTTTAGCCACATCTTCATATTT-TTGCATGCCAATACCATTTTTATGGCTTGTAAATTGATAC
66 GGGTTTAGGCACATCTTCATATTTCTT-CATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
5886101 AATGGTCCCTTCAGCCTTCACATGAAGTTTCATGGCAAGACGAATCATTTTCTATTTTTCACGAT
130 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** ** * *
5886166 TTTCGAAACTTTTTGTGGTTCGACGATGCTTAAAATTTTTTTGGAAGGATTTTTGACCCCAAACT
195 TTTCGAAACTTTTTACGGTTCGA-GATTTTTAAAATTTTTTCGAAAGGATTTTTGACCCCAAACT
* *
5886231 TGGTAGCCGTGATCCTTGTATTTTTGTTGGCATGCACGAAAGAATTCAGCTAAAAACTTGAAGTG
259 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACGAAAGAATTCAGCTAAAAACTCGAAGTG
*
5886296 TACAAGATTTTGTGACCATTTAAGAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
324 TACAAGATTTTGTGACCATTTGAGAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
5886361 CAAACCTGTAAAATCTCAAATGCTGTTTAAGGAGGTGTGAGGTCTCAAGGTTTGATGAGAGATAG
389 CAAACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-
* * *
5886426 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAGATCATGTGCACACACCCCCCTGGCCC
453 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCC
* * *
5886491 CCCAGATCGTCGGAACCCCAATGCCGTTGGTCAGGTTCTTCGACGATGCTCCGACGATGGTGCCC
517 CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
* ** * * *
5886556 CAGTGAAGAAAAATATGGCCCCAGCACATGCTTGAGCCTAGTATGTGCTGCCGCAACCCTCGATT
582 CAGTGAAGAAAAATATGGCCCCAGCACATACCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATC
* * *
5886621 CGGTCCGATCTTAGACTGGGAATACACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGG
647 CGGTCCGATCTTAGACTGGGAATACACTCCGTATACCTAAGCCAACCGACAAAACGAGCGGGCGG
* *
5886686 GCGGG
712 GCAGA
* * * *
5886691 GGGGCGGGCACTGCGCCGGCCAGAAAGACAGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGT
1 CGGGCGGGCACTGCGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * *
5886756 GGATTTAGGCACATCTTCCTATTTCTACCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
66 GGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
5886821 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGACGACTTGTTTTTTATTTTTCACGATT
131 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* *
5886886 TTGGAAACTTTTTACGGTTC-AGAATTTTTCAAAATTTTTTCGAAAGGATTTTTCACCCCAAACT
196 TTCGAAACTTTTTACGGTTCGAG-ATTTTT-AAAATTTTTTCGAAAGGATTTTTGACCCCAAACT
* *
5886950 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATGAAAGAATTCAGCTAAAAACTCGAAGCG
259 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACGAAAGAATTCAGCTAAAAACTCGAAGTG
*
5887015 TACAAGATTTTGTGACCATTTGAGAAAAGCGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
324 TACAAGATTTTGTGACCATTTGAGAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
5887080 CAAACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
389 CAAACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
*
5887145 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT-CTGGACACCCCCCGGCCCC
454 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-GCACACCCCCCGGCCCC
* * * *
5887209 CCCGATCGCCGAAACCCCAATGCGGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCTC
518 CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
* * * * * *
5887274 GGTGAAGAGAAATGTGGCCCCAGCACTTACCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCC
583 AGTGAAGAAAAATATGGCCCCAGCACATACCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCC
* **
5887339 GGTCTGATCTTAGACTGGGAATGA-ACTTTGTATACCTAAGCCAACCGACAAAACGAGCGGGCGG
648 GGTCCGATCTTAGACTGGGAAT-ACACTCCGTATACCTAAGCCAACCGACAAAACGAGCGGGCGG
5887403 GCAGA
712 GCAGA
*
5887408 CGGGCGGGCACTGCGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
1 CGGGCGGGCACTGCGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
5887473 GGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
66 GGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
5887538 ATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
131 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * * * *
5887603 TTTGAAACTTTTTACGGTTTGAGATTTTTTAAATTTCTTTCGAAAGGAGTTTTGGCCCCAAAATT
196 TTCGAAACTTTTTACGGTTCGAGATTTTTAAAATTT-TTTCGAAAGGATTTTTGACCCCAAACTT
* * * * *
5887668 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGACGTGA
260 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACGAAAGAATTCAGCTAAAAACTCGAAGTGT
* *
5887733 ACAAGATTTCGTGACCATTTGA-ATAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAG
325 ACAAGATTTTGTGACCATTTGAGA-AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * * * *
5887797 CAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGACAG
389 CAAACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
* *
5887862 GGGCCCAATATAAGGGCCAAGTACCAGCAGCCATCGCACATCATGTGCGTACACCCCCCGGCCCC
454 GGG-CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* * *
5887927 CTCGATCGTCGGAACCCCAATGCTGCCGGTCAGG
518 CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
5887961 GTTTTTCTTC
Statistics
Matches: 1148, Mismatches: 112, Indels: 21
0.90 0.09 0.02
Matches are distributed among these distances:
716 7 0.01
717 587 0.51
718 147 0.13
719 406 0.35
720 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (716 bp):
CGGGCGGGCACTGCGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
TTCGAAACTTTTTACGGTTCGAGATTTTTAAAATTTTTTCGAAAGGATTTTTGACCCCAAACTTG
GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACGAAAGAATTCAGCTAAAAACTCGAAGTGTA
CAAGATTTTGTGACCATTTGAGAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
AACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAGT
GAAGAAAAATATGGCCCCAGCACATACCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGT
CCGATCTTAGACTGGGAATACACTCCGTATACCTAAGCCAACCGACAAAACGAGCGGGCGGGCAG
A
Found at i:5889397 original size:26 final size:26
Alignment explanation
Indices: 5889361--5889413 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5889351 CTGATCCAAT
5889361 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5889387 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5889413 C
1 C
5889414 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5889509 original size:185 final size:185
Alignment explanation
Indices: 5889174--5889522 Score: 423
Period size: 185 Copynumber: 1.9 Consensus size: 185
5889164 ATCCAGTCTG
*
5889174 ATCTTAGGCTGCGAATGAACTCCGTATGCTTAGACCAAGAATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGCGAATGAACTCCGTATGCTTAGACCAAGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * *
5889239 CAACGAAACGAGTATGCGGGTGCTCAGCCAGCTAGAGCGGCGAGATATGCAAGCCGGGGATTAGT
66 CAACAAAACGAGCATGCGGGCGCTCAGCCAGCCAGAGCGGCGAGATATGCAAGCCGAGGATGAGT
* * **
5889304 CGGGCCCCCCTTTGCGTGCTGCTGATCCTGCTACCACAACCCTCGGTCTGATCCA
131 CGGGCCCCCCTCTACGTGCTGCCAATCCTGCTACCACAACCCTCGGTCTGATCCA
* *** *
5889359 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
1 ATCTTAGACTGCGAATGAACTCCGTATGCTTAGACCAAGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * * * *
5889424 CCATAAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCTG-GATGTGTAAGTCGAGGATCGA
66 CAACAAAACGAGCATGCGGGCGCTCAGCCAGCCAGAGCGGC-GAGATATGCAAGCCGAGGAT-GA
*
5889488 -TCGGGTCCCCCTCTACGTGCTGCCAATCCTGCTAC
129 GTCGGGCCCCCCTCTACGTGCTGCCAATCCTGCTAC
5889523 TGTAACCCTC
Statistics
Matches: 135, Mismatches: 27, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
185 133 0.99
186 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (185 bp):
ATCTTAGACTGCGAATGAACTCCGTATGCTTAGACCAAGAATGAACTCCGTATGCCTAAGTCAAC
CAACAAAACGAGCATGCGGGCGCTCAGCCAGCCAGAGCGGCGAGATATGCAAGCCGAGGATGAGT
CGGGCCCCCCTCTACGTGCTGCCAATCCTGCTACCACAACCCTCGGTCTGATCCA
Found at i:5889532 original size:185 final size:185
Alignment explanation
Indices: 5889174--5889564 Score: 417
Period size: 185 Copynumber: 2.1 Consensus size: 185
5889164 ATCCAGTCTG
* *
5889174 ATCTTAGGCTGCGAATGAACTCCGTATGCTTAGACCAAGAATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCAAGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * *
5889239 CAACGAAACGAGTATGCGGGTGCTCAGCCAGCTAGAGCGGCGAGATATGCAAGCCGGGGATTAGT
66 CAACAAAACGAGCATGCGGGCGCTCAGCCAGCCAGAGCGGCGAGATATGCAAGCCGAGGATGAGT
* * ** ** *
5889304 CGGGCCCCCCTTTGCGTGCTGCTGATCCTGCTACCACAACCCTCGGTCTGATCCA
131 CGGGCCCCCCTCTACGTGCTGCCAATCCTGCTACCACAACCCTCAATCCGATCCA
*** *
5889359 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCAAGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * * * *
5889424 CCATAAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCTG-GATGTGTAAGTCGAGGATCGA
66 CAACAAAACGAGCATGCGGGCGCTCAGCCAGCCAGAGCGGC-GAGATATGCAAGCCGAGGAT-GA
* *** * * *
5889488 -TCGGGTCCCCCTCTACGTGCTGCCAATCCTGCTACTGTAACCCTCAATCCGGTTCG
129 GTCGGGCCCCCCTCTACGTGCTGCCAATCCTGCTACCACAACCCTCAATCCGATCCA
*
5889544 ATCTTAGACTGGGAATAAACT
1 ATCTTAGACTGGGAATGAACT
5889565 TTGTATGCCT
Statistics
Matches: 167, Mismatches: 37, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
185 165 0.99
186 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (185 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCAAGAATGAACTCCGTATGCCTAAGTCAAC
CAACAAAACGAGCATGCGGGCGCTCAGCCAGCCAGAGCGGCGAGATATGCAAGCCGAGGATGAGT
CGGGCCCCCCTCTACGTGCTGCCAATCCTGCTACCACAACCCTCAATCCGATCCA
Found at i:5890310 original size:26 final size:26
Alignment explanation
Indices: 5890260--5890312 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5890250 CCAGTCCGAT
**
5890260 CTTAGACTGGGAATGAACTGTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5890286 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5890312 C
1 C
5890313 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5891195 original size:26 final size:26
Alignment explanation
Indices: 5891159--5891211 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5891149 CCAGTCCAAT
*
5891159 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5891185 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5891211 C
1 C
5891212 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5891408 original size:897 final size:894
Alignment explanation
Indices: 5889355--5891552 Score: 3373
Period size: 897 Copynumber: 2.4 Consensus size: 894
5889345 CTCGGTCTGA
*
5889355 TCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
1 TCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
5889420 CAACCCATAAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCTGGATGTGTAAGTCGAGGAT
66 CAACCCATGAAATGAGCGTGCGGGCGCTCAGTCGGCCAAAGGGGCAGGATGCGCAAGTCGGGGAT
* * * * * *
5889485 CGATCGGGTCCCCCTCTACGTGCTGCCAATCCTGCTACTGTAACCCTCAATCCGGT-TCGATCTT
131 CG-CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCAGTCCGGTCT-GATCTT
* ** * *
5889549 AGACTGGGAATAAACTTTGTATGCCTAAGCCAACCGACGAAATGAACGGGCGGGCGGGCGGGCAC
194 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A--AACGAGCGGGCGAGCGGGCAC
* * * *
5889614 TACGCCGGCCAGATAGACAGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCA
255 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* *
5889679 CATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTA
320 CATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
5889744 AGCCTTCACGTGAAGTTTCATGGCAAGACAACACGTTTTCTATTTTTCATGATTTTTTAAACCTT
385 AGCCTTCACGTGAAGTTTCATGGCAAGACAACACGTTTTCTATTTTTCATGATTTTTTAAACCTT
5889809 TTGTGGTTTGGGATTTTTCAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACCTGGTAGACGTGA
450 TTGTGGTTTGGGATTTTTCAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACCTGGTAGACGTGA
5889874 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTG
515 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTG
5889939 TGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
580 TGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * * *
5890004 ATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
645 ATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGAAGAGGGATAGGGGGCCAATATA
** *
5890069 AGGGCCAAGTACCAGCACCCATGGCACATCATGTGCACACACCCCCTGGCCCCCCCGATCGTCAG
710 AGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCCGGCCCCCCCGATCGTCAG
* * *
5890134 AACCCCAATGCCGCCGGTCAAATTCTCTGGCGATGCTCCGACGATGGTGCCCCAGCGAAGAAAAA
775 AACCCCAATGCCGCCGGTCAAATTCTCCGACGATGCACCGACGATGGTGCCCCAGCGAAGAAAAA
* * *
5890199 TGCGGCACCAGCACATGCCTGAGCCTACCATATGCTGCCGTAACCCTCGGTCCAG
840 TGCGGCACCAGCACATGCCCGAGCCTACCATATGCTGCCGCAACCCTCAGTCCAG
* ** *
5890254 TCCGATCTTAGACTGGGAATGAACTGTGTATGCTTAGACTGGGAATGAACTCCGTATGCGTAAGT
1 TCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
5890319 CAACCCATGAAATTAGCGTGCAGGCGTTCAGCCGG-CAAGAGGGGCAGGATGCGCAAGTCGGGGA
66 CAACCCATGAAATGAGCGTGCGGGCGCTCAGTCGGCCAA-AGGGGCAGGATGCGCAAGTCGGGGA
* * * * * **
5890383 TCGGCC--G-CCCCATTCTGTGTGCTGCCGAGCATGCTGTTGCAACCCTCAGTCCGGTCCAATCT
130 TC-GCCGGGTCCCC-CTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCAGTCCGGTCTGATCT
* * * *
5890445 TAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAATGAGCGGGCGGACAGGTGGGCA
193 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-G--A-GCGGGCA
* * *
5890510 CTTCGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGCGTGGTAGGTGGGTTTAGGC
254 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
**
5890575 ACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
319 ACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
5890640 AAGCCTTCACGTGAAGTTTCATGGCAAGACAACACGTTTTCTATTTTTCATGATTTTTTAAACCT
384 AAGCCTTCACGTGAAGTTTCATGGCAAGACAACACGTTTTCTATTTTTCATGATTTTTTAAACCT
5890705 TTTGTGGTTTGGGATTTTTCAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACCTGGTAGACGTG
449 TTTGTGGTTTGGGATTTTTCAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACCTGGTAGACGTG
5890770 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTT
514 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTT
* *
5890835 GTGACCATTTGAAAAAAGTGTCCCCCATTTCAGACACTTTAATGGCTACTGGGAGCAAACCTGTA
579 GTGACCATTTGAAAAAAGTGT-CCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTA
5890900 AAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGAAGAGGGATAGGGGGCCAATA
643 AAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGAAGAGGGATAGGGGGCCAATA
* * * * *
5890965 TAAGTGCCAAGTACCAGCACCCATCACATATCATGTGCGCACACCCCCCCGGGCCCCTCGATCGT
708 TAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACA-CCCCCCGGCCCCCCCGATCGT
** ** **
5891030 TGGAACCGTAATGCCGCCGGTCAGGTTCTCCGACGATGCACCGACGATGGTGCCCC-GACGAAGA
772 CAGAACCCCAATGCCGCCGGTCAAATTCTCCGACGATGCACCGACGATGGTGCCCCAG-CGAAGA
* * * * *
5891094 AAAATGCGGTACCAGCGCATGCCCGAGCCTAGCATGTGTTGCCGCAACCCTCAGTCCAG
836 AAAATGCGGCACCAGCACATGCCCGAGCCTACCATATGCTGCCGCAACCCTCAGTCCAG
*
5891153 TCCAATCTTAGTCTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
1 TCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
5891218 CAACCCATGAAACGAGTGTGCGGGCGCTCAATCGGCCAAAGGGGCGGGATGCGCAAGTCGGGGAT
66 CAACCCATGAAATGAGCGTGCGGGCGCTCAGTCGGCCAAAGGGGCAGGATGCGCAAGTCGGGGAT
* * *
5891283 CAGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTACAACCCTCGGTCTGGTCTGATCTTA
131 C-GCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCAGTCCGGTCTGATCTTA
*
5891348 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCACTACCC
195 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCACTACGC
* * *
5891413 CGACCAGAGACACGGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
260 CGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
5891478 TCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGACCCTTAAGCCT
325 TCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
5891543 TCACGTGAAG
390 TCACGTGAAG
5891553 GTTCTCCGGT
Statistics
Matches: 1167, Mismatches: 117, Indels: 32
0.89 0.09 0.02
Matches are distributed among these distances:
893 9 0.01
894 1 0.00
895 1 0.00
896 4 0.00
897 556 0.48
898 144 0.12
899 353 0.30
900 5 0.00
901 90 0.08
902 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (894 bp):
TCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCATGAAATGAGCGTGCGGGCGCTCAGTCGGCCAAAGGGGCAGGATGCGCAAGTCGGGGAT
CGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCAGTCCGGTCTGATCTTAG
ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCACTACGCC
GGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
CATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CACGTGAAGTTTCATGGCAAGACAACACGTTTTCTATTTTTCATGATTTTTTAAACCTTTTGTGG
TTTGGGATTTTTCAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACCTGGTAGACGTGATCCTTG
TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCA
TTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
AATGCTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGAAGAGGGATAGGGGGCCAATATAAGGGCC
AAGTACCAGCACCCATCACACATCATGTGCACACACCCCCCGGCCCCCCCGATCGTCAGAACCCC
AATGCCGCCGGTCAAATTCTCCGACGATGCACCGACGATGGTGCCCCAGCGAAGAAAAATGCGGC
ACCAGCACATGCCCGAGCCTACCATATGCTGCCGCAACCCTCAGTCCAG
Found at i:5895371 original size:25 final size:26
Alignment explanation
Indices: 5895336--5895387 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
5895326 CCAGTTTGAT
5895336 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5895362 CTTAG-CTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5895387 C
1 C
5895388 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 21 0.81
26 5 0.19
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5895733 original size:894 final size:896
Alignment explanation
Indices: 5893713--5895885 Score: 3011
Period size: 896 Copynumber: 2.4 Consensus size: 896
5893703 TGTGCTGCCA
* * * *
5893713 CAACCCTCGGTCTGATCCGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAA
1 CAACCCTTGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
5893778 ACGAGCGGGTGGGC-GA---GCACTACGCCGGCCAGAGAGATGGGATGCGCAACCCGTGGATCGA
66 ACGAGCGGGCGGGCGGACGGGCACTATGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * *
5893839 TAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTAATGGCTT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
* ** * *
5893904 GTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATAACAAGACAACTCGTTTTTT
196 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * *
5893969 ATTTTTCATGATTTTTGAAACTTTTTACGG-TTCGGGATTTTTAAAAATTTTTTCGGAAGCCATT
261 ATTTTTCACGATTTTTGAAACTTTTTACGGTTTC-GGATTTTT-AAAATTTTTTTGGAAG-GATT
* * **
5894033 TTGG-CCCAAACTTGGTAGACGTGATCCCTCTAATTTTTTTGGTGTGCACAAAAAAATTCAGCCA
323 TTGGCCCCAAACTTGGTAGACGTGATCCATGT-ATTTTTTTGGCATGCACAAAAAAATTCAGCCA
*
5894097 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTCAGACACTTTAA
387 AAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTCAGACACTTTAA
* *
5894162 TTGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTT
452 TGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
5894227 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGGGTGCAC
517 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT-GGTGCAC
* *
5894292 ACCAGCCCCCGCCCCCCCGATCGTCAGAACTCCAATGCGGTCGGTCAGGTTCTCCGACGGTGCTC
581 ACCAGCCCCCGCCCCCCCGATCGTCAGAACTCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC
* * * * *
5894357 TGGTGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATCCCCGAACCCAGCATGTGTTGT
646 CGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATCCCCGAACCAAGCATGTGCTGC
* ** *
5894422 CGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACACTTTAAGTTTAGACTAAGAATGA
711 CGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACACCGTAAGCTTAGACTAAGAATGA
* * * *
5894487 ACTCCGTATGCCTAAGTTAACACACAAAACGAGCGTGCGGCACTCAGCCGGCCAGAGGGGTGAGA
776 ACTCCGTATGCCTAAGTCAACACACAAAACGAGCATGCGGCACTCAGCCGGCAAGAGGGGCGAGA
** * * * * * *
5894552 TGTGCAAGTCAGGGATTGGCCGGGTGCCCCTCTGTGTGCTCCGATCTTGCTGCTGG
841 TGCACAAGTCAGGGATCGGCCGGGTCCCCCTCTGCGTGCTCCGATCCTGCTGATCG
* * * ** * *
5894608 AAACCTCTTGGTCCGGTCTGATGGTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGA
1 CAACC-CTTGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* *
5894673 AACAAGCGGGC--G-GG-CGGGCACTATG-TCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATC
65 AACGAGCGGGCGGGCGGACGGGCACTATGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* *
5894733 GATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGC
129 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGC
* * *
5894798 TTATAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACCCGTTTT
194 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
** *
5894863 CTATTTTTCACGATTTTCAAAACTTTTTGCGGTTTCGGATTTTTCAAAATTTTTTTGGAAGGATT
259 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTTCGGATTTTT-AAAATTTTTTTGGAAGGA-T
* **
5894928 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGTG
322 TTTGGCCCCAAACTTGGTAGACGTGATCCATGTATTTTT-TTGGCATGCACAAAAAAATTCAGCC
* * *
5894993 AAAAATTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTA
386 AAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTCAGACACTTTA
* * *
5895058 ATGGCTACTGGCAGCAAA-CTAGTAAATTGTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGG
451 ATGGCTACTAGCAGCAAACCT-GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * *
5895121 TTTGATGAGGGATAGGGGGCCAATATAA-GGCCAAGTATC-GACGCCCATCGCACATTAT-GTGC
515 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG-CACCCATCGCACATCATGGTGC
* * * *
5895183 GCA-CA-CCCCCAGCCCCCCCGGTCGTCGGAAC-CCAATGCCGTCGGTCAGGTTCTCCGGCGATG
579 ACACCAGCCCCC-GCCCCCCCGATCGTCAGAACTCCAATGCCGTCGGTCAGGTTCTCCGACGATG
* *
5895245 CTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCAAGCATGTGC
643 CTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATCCCCGAACCAAGCATGTGC
* *** * * **
5895310 TGCCGTAACCCTCGGTCCAGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG-CTGGGAA
708 TGCCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACACCGTAAGCTTAGACTAAGAA
* ** *
5895374 TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGCAAGAGGGGC
773 TGAACTCCGTATGCCTAAGTCAACACACAAAACGAGCATGC-GGCACTCAGCCGGCAAGAGGGGC
* * *
5895439 GGGATGCACAAGTCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCT-ATCG
837 GAGATGCACAAGTCAGGGATCGGCCGGGTCCCCCTCTGCGTGCT-CCGATCCTGCTGATCG
*
5895499 CAACCCTTGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAA
1 CAACCCTTGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
5895564 ACGAGCGGGCGGGCGGACGGGCACTATGCTAGCCAGAGAGACGGGATGCGCAAGCCGTGTATCGA
66 ACGAGCGGGCGGGCGGACGGGCACTATGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * *
5895629 CAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
* * * *
5895694 GCAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTCCATGGCAAGACGACTCATTTTCT
196 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * *
5895759 ATTTTTCACGATTTTTGAAACTTTTTACTGTTTGGGACTTTTTAAAATTTTTTTGAAAGGAATTT
261 ATTTTTCACGATTTTTGAAACTTTTTACGGTTTCGGA-TTTTTAAAATTTTTTTGGAAGG-ATTT
*
5895824 TGGCCCCAAACTTGGTAGTCGTGATCCATGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
324 TGGCCCCAAACTTGGTAGACGTGATCCATGTATTTTT-TTGGCATGCACAAAAAAATTCAGC
5895886 TAAGTACCAG
Statistics
Matches: 1122, Mismatches: 134, Indels: 45
0.86 0.10 0.03
Matches are distributed among these distances:
890 103 0.09
891 201 0.18
892 30 0.03
893 8 0.01
894 273 0.24
895 37 0.03
896 324 0.29
897 146 0.13
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (896 bp):
CAACCCTTGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACGAGCGGGCGGGCGGACGGGCACTATGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCACGATTTTTGAAACTTTTTACGGTTTCGGATTTTTAAAATTTTTTTGGAAGGATTTTG
GCCCCAAACTTGGTAGACGTGATCCATGTATTTTTTTGGCATGCACAAAAAAATTCAGCCAAAAA
CTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTCAGACACTTTAATGGC
TACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGGTGCACACCAG
CCCCCGCCCCCCCGATCGTCAGAACTCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGTG
ATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATCCCCGAACCAAGCATGTGCTGCCGCAA
CCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACACCGTAAGCTTAGACTAAGAATGAACTCC
GTATGCCTAAGTCAACACACAAAACGAGCATGCGGCACTCAGCCGGCAAGAGGGGCGAGATGCAC
AAGTCAGGGATCGGCCGGGTCCCCCTCTGCGTGCTCCGATCCTGCTGATCG
Found at i:5896126 original size:26 final size:26
Alignment explanation
Indices: 5896075--5896127 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5896065 CCGGTCCAAT
**
5896075 CTTAGACTGGGAATGAACTCTTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5896101 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5896127 C
1 C
5896128 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5897054 original size:26 final size:26
Alignment explanation
Indices: 5897003--5897055 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5896993 CCGGTCCGAT
* *
5897003 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
*
5897029 CTTAGACTGGGAATAAACTCTATATG
1 CTTAGACTGGGAATAAACTCCATATG
5897055 C
1 C
5897056 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Done.