Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 44 of 129
Found at i:5897949 original size:26 final size:26
Alignment explanation
Indices: 5897920--5897972 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5897910 CCGGTCCAAT
5897920 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5897946 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5897972 C
1 C
5897973 CAAGTCAACC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5898090 original size:184 final size:185
Alignment explanation
Indices: 5897706--5898130 Score: 586
Period size: 184 Copynumber: 2.3 Consensus size: 185
5897696 GCCCAGCATG
* * * *
5897706 TGCTGCCCTAAACCTCGATCCAGTCCGATCTTAGACTAGGAATGAACTCCGTTTGCTTAGACTGG
1 TGCTGCCATAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* *
5897771 GAATGAACTCTGTATGCCTAAGTTAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAAG
66 GAATGAACTCTGTATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGCGCTCAGCCAGCCAGAAG
* * * * * ** *
5897836 GACGGGATGCGTAAGTCGAGGATCAGTCGGGTCCCCCTCTGCGTGCTGTCGTTTC
131 GACGGGATGCGCAAGGCGAGGATCAGCCGGGTCCCCCTCTACGTGCTGCCAATCC
** * *
5897891 TGCTGCCGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
1 TGCTGCCATAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
*
5897956 GAATGAACTCTGTATGCC-AAGTCAACCCATGAAAAGAGCGTGCGGGCGCTCAGCCGGCCA-AAG
66 GAATGAACTCTGTATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGCGCTCAGCCAGCCAGAA-
* *
5898019 GGGA-GGGATGCGCAAGGCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCAATCC
130 -GGACGGGATGCGCAAGGCGAGGATCAGCCGGGTCCCCCTCTACGTGCTGCCAATCC
* * * *
5898075 TGCTGCCATAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGCATGC
1 TGCTGCCATAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
5898131 CTAAGCCAAC
Statistics
Matches: 210, Mismatches: 28, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
183 2 0.01
184 129 0.61
185 79 0.38
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.21
Consensus pattern (185 bp):
TGCTGCCATAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GAATGAACTCTGTATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGCGCTCAGCCAGCCAGAAG
GACGGGATGCGCAAGGCGAGGATCAGCCGGGTCCCCCTCTACGTGCTGCCAATCC
Found at i:5898858 original size:25 final size:25
Alignment explanation
Indices: 5898830--5898877 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
5898820 TCCGATCATA
5898830 GACTGGGAATGAACTCCGTATGCTT
1 GACTGGGAATGAACTCCGTATGCTT
* *
5898855 GACTGGGAATGAAGTCTGTATGC
1 GACTGGGAATGAACTCCGTATGC
5898878 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (25 bp):
GACTGGGAATGAACTCCGTATGCTT
Found at i:5900624 original size:26 final size:26
Alignment explanation
Indices: 5900595--5900647 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5900585 CCGATCCGAT
*
5900595 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
5900621 CTTAGACTGTGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5900647 C
1 C
5900648 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5903254 original size:26 final size:26
Alignment explanation
Indices: 5903225--5903277 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5903215 CCGATCCCAT
5903225 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
5903251 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5903277 C
1 C
5903278 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5903547 original size:12 final size:12
Alignment explanation
Indices: 5903530--5903561 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
5903520 GAAACGAGCG
5903530 GGCGGGCAGGCA
1 GGCGGGCAGGCA
*
5903542 GGCGGGCAGGCG
1 GGCGGGCAGGCA
5903554 GGCGGGCA
1 GGCGGGCA
5903562 CTATGCCTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.25, G:0.62, T:0.00
Consensus pattern (12 bp):
GGCGGGCAGGCA
Found at i:5904446 original size:26 final size:26
Alignment explanation
Indices: 5904417--5904469 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5904407 CCGGTCTGAT
5904417 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
*
5904443 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
5904469 C
1 C
5904470 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:5906770 original size:878 final size:877
Alignment explanation
Indices: 5903812--5907999 Score: 5048
Period size: 907 Copynumber: 4.7 Consensus size: 877
5903802 CCCCAAACTT
* * * *
5903812 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGTGAGCCAATACCATTTTTATGGC
1 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGC
*
5903877 TTGTAAATTCATACAATGGTCCCTTAAGCCTGCACGTGAAG-TTCATGGCAAGACGACTCATTTT
66 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTT
* * *
5903941 CTATTTTTCACGATTTTTG-AACTTTTTAAGGTTCGGGATTTTTTAAAATTTTTTCGGGAGGAGT
131 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGT
* *
5904005 TTTGGCGCCGAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAACT
196 TTTGGCCCCGAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* * *
5904069 AAAAACTCAAAGTGTACAAGATATTGTGATCATTT-AGAAAAAGTGACCCCATTTCAGACACTTT
261 AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGA-AAAAAGTGTCCCCATTTCAGACACTTT
* *
5904133 ATTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTCTTGAGG
325 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGG
* * * *
5904198 TTTGATGAGGGATAGGGGCCCATATAAGGGCCAAGTAGCAGCACCCTTCGTACATCATGTGTGCA
390 TTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACATCATGTGCGCA
* * *
5904263 CACCACCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCTGTCAGGTTCTCCGACAATGCT
455 CA-C-CCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCT
* *
5904328 CCGGTGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGTTG
518 CCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
*
5904393 CTACAACACTCGATCCGGTCTGATCTTAGACTGCGAATGAACTCCGTATGCTTAGACTGGGAATG
583 C--C-ACA----A-CC---C---TC--GGACT--G-AT---CT--G-AT-CTTAGACTGGGAATG
* * *
5904458 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCAGGCCAGAGGGGCGG
622 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGG
* * * * *
5904523 GATGCGCAAGCTAGGGATCGGA-CGGGTACCCCTCTGCGTGCTGCCGATCCTAGTGCCACAACCC
687 GAAGCGCAAGCCA-GGATCGGACCAGGTACCCCTCTGCGTGCTACCGATCCTACTGCCACAACCC
* * *
5904587 TTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAAC
751 TCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* * * * *
5904652 GGGCGGACGGGCGGACGGGCACTACGTCGACTAA-AGACACGAGATGCGCAAGCCGTGGATC
816 GGGCGGGCGGACGGGCGGGCACTACGTCGACTAAGAGAGACGAGATGCGCAAGCCATGGATC
* * * *
5904713 GATAGGGTGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGTGAGCCAATACCATTTTTAT
1 GATA--G-GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
*
5904778 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTGCACGTGAAGTTTCATGGCAAGACGACTCAT
63 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
* * *
5904843 TTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGATTTTTTAAAATTTTTTCGGGAGG
128 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
* *
5904908 AGTTTTGGCGCCGAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCA
193 AGTTTTGGCCCCGAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * *
5904973 ACTAAAAACTCAAAGTGTACAAGATATTGTGATCATTT-AGAAAAAGTGACCCCATTTCAGACAC
258 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGA-AAAAAGTGTCCCCATTTCAGACAC
* *
5905037 TTTATTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTCTTG
322 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTG
* * *
5905102 AGGTTTGATGAGGGATAGGGGCCCATATAAGGGCCAAGTAGCAGCACCCATCACACATCATGTGT
387 AGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACATCATGTGC
* * * *
5905167 GCACACCACCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGACAAT
452 GCACA-C-CCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGAT
* *
5905232 GCTCCGGCGATGGTCCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTG
515 GCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * *
5905297 TTGCCACAACACTC-AATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
580 CTGCCACAACCCTCGGA-CTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * **
5905361 CCACGAAACGAGCGTGCGGTCGTTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGG-
644 CCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGAAGCGCAAGC-CAGGATCGGA
* * * * * * *
5905425 CCAGGTACCACTCTGTGTGCTGCCGATCCTACTGCCACAACCCAT-GGTTCGGTTCAATCTTAGA
708 CCAGGTACCCCTCTGCGTGCTACCGATCCTACTGCCACAACCC-TCGGTCCGATCCGATCTTAGA
* ** * *
5905489 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC-A---AACGAGCAGACGGGCGGGCA
772 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGACGGGCGGGCA
* * * *
5905550 CTATGTCGACT-AGAGAGACGAGATGCGCATGCCGTGGATT
837 CTACGTCGACTAAGAGAGACGAGATGCGCAAGCCATGGATC
* * * *
5905590 GATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCTTTTTTATGGC
1 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGC
* *
5905655 TTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
66 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTT
*
5905720 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTTCGA-ATTTTTTAAAATTTTTTCAGAAGGAG
131 CTATTTTTCACGATTTTTGAAACTTTTTACGG-TTCGAGATTTTTTAAAATTTTTTCGGAAGGAG
* *** *
5905784 TTTTGGCCCCAAACCAAGTAGATGTGATCCTTGTATTTTTGTTGGAATGCACAAAAAACA-TCAG
195 TTTTGGCCCCGAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-ATTCAG
* * *
5905848 CTAAAAACTCTAAGTGTATAAGATTTTGTGACCGTTTG-AAAAAGTGTCCCCATTTCAGACACTT
259 CTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
5905912 TAATGGCTACAGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAG
324 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAG
*
5905977 GTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
389 GTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACATCATGTGCGC
* * *
5906042 ACACCCCCCGGCCCCCCCGATCGCCGGAACCCCCATGCCACCAATCAGGTTCTCCGACGATGCTC
454 ACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCTC
* * * *
5906107 CGGCGATCGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCTCAATCCCAGCATGTGCTGC
519 CGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* *
5906172 CACAACCCTCGGACTGATCTGATCTTAGACTGGGAATGTACTCCGTATGCCTAAGTCAACCCATG
584 CACAACCCTCGGACTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * *
5906237 AAATGAGTGTGCGGGCGCTCAACCGACCA-AGGGGCGGGAAACGGCAAGCCAGGATCGGTCC-GG
649 AAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGAAGC-GCAAGCCAGGATCGGACCAGG
* * * ** * * *
5906300 T-CCCCTCTCCGGGCCTACCGATCCTGGCTATCGGTA-AACCCTCAGT-CGGTCTGATCTTAGAC
713 TACCCCTCTGCGTG-CTACCGATCCT-AC--T-GCCACAACCCTCGGTCCGATCCGATCTTAGAC
* *
5906362 TGGGAATGAACTCCGTATGCTCTAAG-CAACGCGATGAAAATACGAGCGGGCGGGCGGACGGGTG
773 TGGGAATGAACTCCGTATGC-CTAAGCCAAC-CGACG--AA-ACGAGCGGGCGGGCGGACGGGCG
* * * * * *
5906426 GGCATTACGCCG-GTAAGAGAGATG-GATGTGGAAGCCATGGATC
833 GGCACTACGTCGACTAAGAGAGACGAGATGCGCAAGCCATGGATC
* *
5906469 GATAGGGTGGT-GGTGGGTTTAGGGACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGC
1 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGC
* * * *
5906533 TTGTAAATTCATACAATGG-CCATTTAGGCCTTCACATGAAGTTTTATGGCAAGACGACTCATTT
66 TTGTAAATTCATACAATGGTCC-CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTT
* * ** * * * **
5906597 TCTTTTTTTTACGATTTTCAAAACTTTTTGCGGTTCGAGAGTTTTTATAATTTTTTAAGAAGGAG
130 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG
* * * *
5906662 TTTTGGCCCCAAAC-TGGTAG-TCATGATCGTTGTATTTTTGTTGGCATGCACAAAAAAATTTAG
195 TTTTGGCCCCGAACTTGGTAGAT-GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* *
5906725 CAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
259 CTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
5906790 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCAT-TTTAAGGAGGTGTGAGTTCTCGA
324 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC-TCTTTAAGGGGGTGTGAGTTCTTGA
*
5906854 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGTAGCACCCATCGCACATCATGTGC
388 GGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACATCATGTGC
* * *
5906919 GCACACCCCCCGGCCCCCCCGATTGTCGGAACCCCAATGTCGCCAGTCAGGTTCTCCGACGATGC
452 GCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGC
* * * * * * *
5906984 TCCGGTGATGGTGCCCTGACAAAGAGAAATAC-GACACCAGCACATGCCTGAGCGCTA-CATGTG
517 TCCGGCGATGGTGCCCCGACGAAGAAAAATGCAG-CACCAGCACATGCCCGAGC-CCAGCATGTG
*
5907047 CTGCCGCAACCCTCTGTCCGGTCCAATCTTAGACTAGGAACGAACTCTGCATGCTTAGACTGGGA
580 CTGCCACAA-CC-C--T-C-G----------GACT------G-A-TCTG-AT-CTTAGACTGGGA
* * * * * *
5907112 ATGAACTCTGTATGCCTAAGTCAACTCATGAAACGAGCGTGTGGGCGCTCAATCGGGCAGAGGGG
619 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGG
* * * * * * *
5907177 CAGGAAGCGAAAGTCTGTGATC-AACCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCACAA
684 CGGGAAGCGCAAGCCAG-GATCGGACCAGGTACCCCTCTGCGTGCTACCGATCCTACTGCCACAA
*
5907241 CCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
748 CCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * * *
5907306 AGCGGAC--G-GG-CGGGCGGGCACTACGTCGAC-CAGAGAGACGGGATGCGTAAGCCATTGATC
813 AGCGGGCGGGCGGACGGGCGGGCACTACGTCGACTAAGAGAGACGAGATGCGCAAGCCATGGATC
** * *
5907366 GAGGGGGTGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
1 GA--TAG-GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
* * *
5907431 GGCTTGTAAATTCCTACAATGGTCCCTAAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
63 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
* * * *
5907496 TTTCTATTTTTCATGATTTTTTGAAACTTTTTACTGTTCGAGATTTTTTAAAATTTTTTTGGAAA
128 TTTCTATTTTTCACGA-TTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
* * * *
5907561 GAG-TTTAGCCCCGAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTC
192 GAGTTTTGGCCCCGAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
5907625 AGCTAAAAACTCGACGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
257 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * *
5907690 TTTAATGGCTACTGGCAGCAAACTTGTAAAATATCAAATGCTCTTTAAGGAGGTGTGAGTTCTCG
322 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTG
* * *
5907755 AGTTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
387 AGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACATCATGTG
*** * * * * **
5907820 CGCACACCCCCTC-G-ATTCCCTATCGTCGG-ACCCTAATGCCG-TAGGTCAGGTTCTCCGGTGA
451 CGCACACCCCC-CGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCA-GTCAGGTTCTCCGACGA
* * * * *
5907881 TGCTCCGGCGATGGTGCCCC-AGTGAAGAAAAATACGGCA-CAACACATGCCCGAGCCCACCATG
514 TGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATG
* ** * * * *
5907944 TGCTACCGTAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGC
578 TGCTGCCACAACCCTCGGACTGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
5908000 TTAGACTGGG
Statistics
Matches: 2909, Mismatches: 287, Indels: 210
0.85 0.08 0.06
Matches are distributed among these distances:
869 8 0.00
870 31 0.01
871 201 0.07
872 40 0.01
873 192 0.07
874 259 0.09
875 11 0.00
876 5 0.00
877 133 0.05
878 270 0.09
879 186 0.06
880 33 0.01
881 188 0.06
882 3 0.00
883 5 0.00
884 1 0.00
885 3 0.00
888 1 0.00
889 1 0.00
890 1 0.00
891 1 0.00
893 3 0.00
894 1 0.00
895 5 0.00
896 24 0.01
897 21 0.01
898 5 0.00
899 31 0.01
900 71 0.02
901 144 0.05
902 284 0.10
903 25 0.01
904 143 0.05
905 114 0.04
906 124 0.04
907 341 0.12
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (877 bp):
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTT
CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGT
TTTGGCCCCGAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGT
TTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACATCATGTGCGCAC
ACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCG
GCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCA
CAACCCTCGGACTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
ACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGAAGCGCAAGCCAGGATCGGACCAGGTAC
CCCTCTGCGTGCTACCGATCCTACTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATG
AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGACGGGCGGGCACTACGTCGA
CTAAGAGAGACGAGATGCGCAAGCCATGGATC
Found at i:5907112 original size:26 final size:26
Alignment explanation
Indices: 5907074--5907126 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5907064 CCGGTCCAAT
5907074 CTTAGACTAGGAACGAACTCTGCATG
1 CTTAGACTAGGAACGAACTCTGCATG
* * *
5907100 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAACGAACTCTGCATG
5907126 C
1 C
5907127 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCTGCATG
Found at i:5908002 original size:26 final size:26
Alignment explanation
Indices: 5907973--5908025 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5907963 CTGGTCCGAT
*
5907973 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5907999 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5908025 C
1 C
5908026 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5908875 original size:12 final size:12
Alignment explanation
Indices: 5908858--5908889 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
5908848 AAAACGAGCC
5908858 GGCGGGCAGGCA
1 GGCGGGCAGGCA
*
5908870 GGCGGGCAGGCG
1 GGCGGGCAGGCA
5908882 GGCGGGCA
1 GGCGGGCA
5908890 CTATGCCTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.25, G:0.62, T:0.00
Consensus pattern (12 bp):
GGCGGGCAGGCA
Found at i:5909786 original size:26 final size:26
Alignment explanation
Indices: 5909757--5909807 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
5909747 CCCATCTTAC
5909757 ACTGGGAATGAACTCCGTATGCCTAG
1 ACTGGGAATGAACTCCGTATGCCTAG
5909783 ACTGGGAATGAACTCCGTATGCCTA
1 ACTGGGAATGAACTCCGTATGCCTA
5909808 AGTCAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (26 bp):
ACTGGGAATGAACTCCGTATGCCTAG
Found at i:5910691 original size:26 final size:26
Alignment explanation
Indices: 5910653--5910705 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5910643 CTGGTCCCAT
5910653 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
5910679 CTTAGACTTGGAATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5910705 C
1 C
5910706 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5910939 original size:908 final size:902
Alignment explanation
Indices: 5909142--5916067 Score: 8481
Period size: 908 Copynumber: 7.7 Consensus size: 902
5909132 CGCCAAACTT
**
5909142 GATAGGGTTGGTAGGTGGG-TTAGGCACATCTTCCATATTTCCGGCATGCCAATGCCA-TTTTAT
1 GATAGGG-TGGTAGGTGGGTTTAGGCACATCTT-CATATTT-CTACATGCCAATGCCATTTTTAT
* * * *
5909205 GACTTCTAAATTCCATACAATGGTCCCTTAAGCCTTCCCGTTAAGTTTCATGGCAAGACGACTCG
63 GGCTTGTAAATT-CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * * *
5909270 TTTTCTA--TTTCAAGA--TTT-AAA--GTTTACAGGTTTGGGATTTTTAAAAATTTTTTTGGAA
127 TTTTCTATTTTTCATGATTTTTGAAACTTTTTAC-GGTTCGGGATTTTTTAAAATTTTTTCGGAA
*
5909328 GGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAAT
191 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATT
* *
5909392 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCGTTTGAAAAAAGTGTCCCCATTTCAGACA
255 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
5909457 CTTTAATGGCTACTGGCAGCAAAGCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
320 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
5909522 GAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
385 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
5909587 GCGCACACCCCACCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
450 GCGCACA-CCC-CCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGATCAGGTTCTCCGACG
** * * ** * *
5909652 ATGCTCCGGTGATGATGCCCTGGGTGATGAAAAATGACTCGCGGCACCAGCACAAGCCCGAGCCC
513 ATGCTCCGACGATGGTGCCC-CGACGAAG-AAAA--A-T-GCGGCACCAGCACATGCCCGAGCCC
* ** * * * *
5909717 AGCATGTGCTGCCACAACCCTCAATCCGGACCCATCTTACACTGGGAATGAACTCCGTATGCCTA
572 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
** * * * * * *
5909782 GACTGGGAATGAACTCCGTATGCCTAAGTCAAGTCACAAAATGAGAGTGTGGGCGCTCAGTCTGC
637 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-CGGCGCTCAGCCGGC
* ** * * * * *
5909847 TAGAGGGGC-GAGATGCGCAAGCCACGGATCGGTCGGGACCCCCTTTGCGTGCTGCTGATCCTGC
701 CAGAGGGGCAG-GATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCCTGC
* *
5909911 TGCCGA-AACCCTTGGTCC-GATCTGATCTTAGACTGGGAATGAAACTCGGTATGCCTAAACCAA
765 TGCC-ACAACCCTTGGTCCAG-TCTGATCTTAGACTGGGAATG-AACTCCGTATGCCTAAGCCAA
* *
5909974 CCGACGAAAC-A----AGCGGGCGGGCGGGCGGGCATTACGCCTGG-CAGAGAGACGGGATGCGC
827 CCGACGAAACGAGCGGGGCGGGCGGGCGGGCGGGCACTACGCC-GGCCAGAGAGACGGGATGCGC
5910033 AAGCCGTGGATC
891 AAGCCGTGGATC
* *
5910045 GATAGGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGC
1 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
* * *
5910110 TTGTAAATTCATACAACGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCCAGACGACTCGTTTT
66 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * *
5910175 CTATTTTTCATGATTTTTGAAACTTTTTATGGTTTGGGATTTTTAAAAATTTTTTCGGAAGGAAT
131 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
*
5910240 TTTGGGCCCAAACTTGGTAGACGTGATCCTTGTAATTTTTTTGGCATGCACAAAAAAATTCAGCT
196 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTTTGGCATGCACAAAAAAATTCAGCT
*
5910305 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTAGAAAAAAGTGTCCCCATTTCAGACACTTTA
260 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
5910370 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGT
325 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
5910434 TTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
390 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * * *
5910499 TACCACCCCCGGCCCCCCCGATCGTCGGAACCCTAATGCTGTCGATCAGATTCTCCGATGATGCT
455 CA-C-CCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCT
* * * * *
5910564 CTGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCTAGCATGTGCTA
518 CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * * *
5910629 CCGTAACCCTCGGTCTGGTCCCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGGAATG
583 CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * * * *
5910694 GACTCCGTATGCCTAACTCAACCCATGAAATGAACGTGCAGCTACTCAGCCGGCCAGAGGGGCAG
648 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGC-GCTCAGCCGGCCAGAGGGGCAG
* *
5910759 GATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCAGGCTGCCGATCCTGCTGCCACAACCTT
712 GATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCACAACCCT
*
5910824 TGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAGCCGACGAAACGAGCG
777 TGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * *
5910889 GACGAGAGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGTCGTGGATC
842 G--G-GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* *
5910953 GATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTGTGGC
1 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
* * * * * *
5911018 TTGTAAATTCATACAATGCTCTCTTAAGGCTTCACGTGAAGTTTCATGGGAAGGCGGCTCGTTTT
66 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * * * *
5911083 TTATTTTTCACGATTTTTGAAACTTTTTACGATTCAGGATTTTTGAAAAATTTTTCGGAAGGAGT
131 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* * * *
5911148 TTTGGCCGCAAACTTGGTAGACGTGATGCTTGTATTTTTGTTGGCATGCATAAAAACATTCAGCT
196 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCT
* *
5911213 AAAAACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTA
260 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * *
5911278 GTGGCTATTGGCAACAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGT
325 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
5911342 TTGATGAGGTATA-GGGGCCAATATAACGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
390 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * *
5911406 CACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTTC
455 CACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCC
** * * * *
5911471 GGTGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCT
520 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * *
5911536 GCAACCCTCGGTCCGGTCCGATCCGATCTTAGATTGGGAAAGAACTCCGTATGCTTAGACTAGGA
585 GCAACCCTCGGTCC-G---G-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
*
5911601 ATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGACGCTCAGCCGGCCAGAGGGG
645 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG-CGCTCAGCCGGCCAGAGGGG
* *** * ** * * *
5911666 CAGAAAATGCAAGTCGGGGATCGA-CTGGGTCCCCCTCTGTGTGCTACCAATCCTACTGCCACAA
709 CAGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCACAA
* ** * * * * *
5911730 CCCTCGGTTTAGTCGGATCTTAGACTGGGAATGAACCCCGTATGCCTAAGCCAGCCAACGAAATG
773 CCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * * * *
5911795 AGC-GGGCGGGCGAGTGGGCGGGCACTACGCCGACCAAAGTGACGGGATACGCAAGCCGTGGATC
838 AGCGGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * ** * **
5911859 GATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATTTTTCTATGTGCCAATGCCATTTTTTTAAC
1 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
* * *
5911924 TTGTAAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTT
66 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * * *
5911989 CTATTTTTCATGATTTTCGAAACTTTATGCGGCTCGGGATTTTTTAAAATTTTTTCAGAAGGAGT
131 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* * * * * *
5912054 TTCGGCCCCAAACTTAGTAGACATGATCCTTATAGTTTTGTTGGCACGCACAAAAAAATTCAGCT
196 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCT
* * *
5912119 -ACAACTTGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTA
260 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
** * *
5912183 ATGGCTACTGGCAAAAAACCTGTAAAATCACAAATGCCCTTTAAGGGGGTGTGAGTTCTCGAGGT
325 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * * *
5912248 TTCATGAGGGATA---AG-C--------GGCCAAGTACCAGCACCCATCACACTTCATGTGCGCA
390 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * *
5912301 CACCCCCCGG-ACCCCCAATCG-CCAAACCCCACTGCCGTC-AGTCAGGTTCTCCGACGATGCTC
455 CACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGA-TCAGGTTCTCCGACGATGCTC
** *
5912363 CGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGACCAGCATGTGCTGC
519 CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * * * *
5912428 CACATCCCTCAGTCCGATCCGATTTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
584 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * ** *
5912493 ACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTAAGG-GCATCA--TGGCCAGAGGGGC-GG
649 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCGC-TCAGCCGGCCAGAGGGGCAGG
* * * * * * *
5912554 TGTGCACAAGCCGGGGATCCGA-CGGGT-CCGCTCTGCATGCTGTCGATCTTTGCT-ACGCAA-C
713 -ATGCGCAAGCCGGGGAT-CGATCGGGTCCCCCTCTGCATGCTGCCGATC-CTGCTGCCACAACC
** * * *
5912615 CTCAGTTC-GATC-AATCTTAAGACTGGGAATGAACTCCGTATG-CTAAGCCAACCGATG-AA-G
775 CTTGGTCCAG-TCTGATCTT-AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* ** * * * * * **
5912675 AGTGGGGTAGGCGGACGGGC-GCCACTA-GTCGGCCAGAGAGACTGGATGCGGAAGAGGTGGATC
838 AGCGGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * * * * *
5912738 GATAGAGTGGTAGGTGGGGTTTAGGAACAAT-TTCATA-TTCTGCATTCC-ATGCAATTTTTTTG
1 GATAGGGTGGTAGGT-GGGTTTAGGCAC-ATCTTCATATTTCTACATGCCAATGCCATTTTTATG
* * * *
5912800 G--TGTAAATTCATACAATGGT--ATTAAGGCGT-ATGTGAAGTTTCATGGCAAGAAGACGACTC
64 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC---AAGACGACTC
* * * **
5912860 G-TTTCTATTTTTCACTGATTTTTTCAAAACTTTTAACGAGATCGAACCATTTTTTAAAATTTTT
126 GTTTTCTATTTTTCA-TGA-TTTTT-GAAACTTTTTACG-GTTCG--GGATTTTTTAAAATTTTT
* *
5912924 TCGGAAGGA-TTTCTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGTATGCACAA
185 TCGGAAGGAGTTT-TGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAA
* * * *
5912988 AAAAATTGAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCAGTTGAAAAAAATGTCCCCATT
248 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
5913053 TCAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGAGTGTG
313 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
5913118 AGTTCTTGAGGTTTGATGAAGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCAC
378 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * ** * * * *
5913183 ATCATGTGTGCACACCCCCCGACCCCCCCGATCACCGAAACCCCAATTCTGTCGGTGAGGTTCTC
443 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGATCAGGTTCTC
* * * * * *
5913248 CGGCAAAGCTCCGGCAATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCA
508 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* ** * * * * * *
5913313 GCATGTGCTACTACATCCCTCGGTCTGATCCAATTTTAGACTGGGAATGAACTCCGTATGCTTAT
573 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* *
5913378 ACTGGGAATGAACTCCGTATGCCTGAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCC
638 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-CGGCGCTCAGCCGGCC
* ** * * * * *
5913443 AGAGGGGCGGGATGCGCAATTCGGGGATCGGTCGGGTCCCCCTCTACATGCTACCGATCTTGCTA
702 AGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTG
* * * ** * * * *
5913508 TCGCAACCCTCGGTCTGGTCCGATGTTAGACTAGGAATGAGCTCCGTATGCCTAAGCCAACCGAC
767 CCACAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
**
5913573 GAAACGAGCAGGCGGGCGGGCGGGCGGGCGGGCGGTACGCCGGCCAGAGAGACGGGATGCGCAAG
832 GAAACGAGC--G-GGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
*
5913638 CCATGGATC
894 CCGTGGATC
* * * * *
5913647 GATAGGGTGGTAGGTGGGTTTAGTCACATCTTGATATTTTTGCATGCCAATGCAATTTTTATGGC
1 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
5913712 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
66 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
** * * * * * * *
5913777 CTATTTTTCATGATTTTCAAAACTTTTTGCAGTTTGAGA-TTTTTAAAATTTTTTTGGCAGTAGT
131 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
** * * *
5913841 TTTGGCATCAAACTCGGTAGACATGATCCTTGTATTATTGTTGGCATGCACAAAAAAATTCAGCT
196 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT-TTTTTGGCATGCACAAAAAAATTCAGCT
* * * * * * **
5913906 AAAAACTTGAACTATACATGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAAATGCTTTA
260 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
*
5913971 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGT
325 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
5914036 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
390 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * *
5914101 CACCCCCCGG-CCCCCCGATCGTCGAAACCCCAATGGC-ACCAGCCAGGTTCTCCGATGATGCTC
455 CACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGA-TCAGGTTCTCCGACGATGCTC
* * * *
5914164 CGATGATGGTGCCCTGACGAAGAAAAATGCGGCACTAGCACCA-GCCCAAGCCCAGCATGTGCTG
519 CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA-CATGCCCGAGCCCAGCATGTGCTG
* * **
5914228 CTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGAATG
583 CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* *
5914293 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAG
648 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTCAGCCGGCCAGAGGGGCAG
* * * * * * * **
5914358 GATGCGCAAGCCAGGGATCGGTCGGGTCCCCTTTTGCATGCTACAGATCTTGCTATCACAACCCT
712 GATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCACAACCCT
* * * * *
5914423 CT-ATCCGGTCTAATCTTAGACTGGGAAT-AACTCCGTATGCCTAAGCCAACCGATGAAATGAGC
777 -TGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* * * * * * *
5914486 -GGGCGAGCGGGCGGGCGGGCTCTACCCCGACCAGAGAGATGGGATGTGCAAGCCGTGTATC
841 GGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * * *
5914547 GATAAGGTGGTAGGTGTGTTTATGCACATCTTCATAGTTT-TACATGCCAATGCAATTTTTATGG
1 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTACATGCCAATGCCATTTTTATGG
*
5914611 CTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
65 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * **
5914676 TCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGAGATTTTTTTTAATTTTTT-GGAAGGAG
130 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
** * * * *
5914740 TTTTGGCATCAAACTTGGCAAACGTGATCCATGTATTTTTTTGGCGTGCACAAAAAAATTCAGCT
195 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCT
* * *
5914805 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCTCATTTTAGACACTTTA
260 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
5914870 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCTTGAGGT
325 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
5914935 TTGATGAGGGATAGGGGGCC-A-ATAAGGGCCAAGTACCAGCACCCATCGCACAT-ATGTGCGCA
390 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * *
5914997 CACCCCACAGCCCCCCCGACCGTCGGAACCCCAATGCCGTCGATCAGG-T-T----C--T-CT--
455 CACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCC
* * *
5915051 GACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTACC
520 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * * *
5915116 GCAACCCTCGGTCTGGTCTGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTAGGAATGAA
585 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
** * * * *
5915181 CTTTGTCTGTCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGA
650 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTCAGCCGGCCAGAGGGGCAGGA
* * ** *
5915246 TGCGCAAGCCGGGGATCGACCGGGTCCCCTTCTGCATGCTGTTGATCCTACTGCCACAACCCTTG
714 TGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCACAACCCTTG
* * *
5915311 GTCTAGTCTGATCTTAGACTGGGAATGAACTCCGAATGCCTAAGCCAACCGACAAAACGAGC-GG
779 GTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * *
5915375 GCGGGAGGGCGGGCGGGCACTATGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
844 GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * *** * * *
5915434 GATAGGGTGGTAGGTGGGTTTAGGTAGATCTTCATATTTCTGTTTTCCAACGCCATTTATATGGC
1 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
* * *
5915499 TTGAAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGTTTT
66 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * * * *
5915564 CTATTTTTCATGATTTTCGAAACATTTTGCTGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGT
131 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
*
5915629 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATACAGCTA
196 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTA
*
5915694 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTCCGAACACTTTA
261 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTA
* * * *
5915758 GTGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGTTCTTTAAGGGGGTGTGAGTTCTTGAGGT
325 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
5915823 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCACCTCCCATACG-ACATCATGTGCGC
390 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT-CGCACATCATGTGCGC
* * * *
5915887 ACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCT
454 ACA-CCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCT
* ** * * * * *
5915952 CCGACGATGGTGCCCTGGTGAAGAAAAATGCAGCACCACCACATGCCCGAGCCTAGAAAGTGCTG
518 CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * * * *
5916017 TCGGAACCCTCGGTCCGGGCTGATCTTAGACTGGGAATGAGCTCCGTATGC
583 CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
5916068 CTAATCCAAC
Statistics
Matches: 5206, Mismatches: 686, Indels: 262
0.85 0.11 0.04
Matches are distributed among these distances:
873 16 0.00
874 7 0.00
875 13 0.00
876 30 0.01
877 4 0.00
878 21 0.00
879 52 0.01
880 28 0.01
881 92 0.02
882 144 0.03
883 31 0.01
884 20 0.00
885 34 0.01
886 255 0.05
887 244 0.05
888 285 0.05
889 2 0.00
890 27 0.01
891 13 0.00
892 41 0.01
893 107 0.02
894 52 0.01
895 54 0.01
896 202 0.04
897 65 0.01
898 8 0.00
899 199 0.04
900 299 0.06
901 329 0.06
902 55 0.01
903 128 0.02
904 37 0.01
905 512 0.10
906 569 0.11
907 263 0.05
908 604 0.12
909 60 0.01
910 230 0.04
911 5 0.00
912 33 0.01
913 13 0.00
914 7 0.00
915 16 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
ACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCG
ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCGCTCAGCCGGCCAGAGGGGCAGGATG
CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCACAACCCTTGGT
CCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGC
GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
Found at i:5911592 original size:26 final size:26
Alignment explanation
Indices: 5911563--5911615 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5911553 CCGATCCGAT
* *
5911563 CTTAGATTGGGAAAGAACTCCGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
*
5911589 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
5911615 C
1 C
5911616 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTCCGTATG
Found at i:5912481 original size:26 final size:26
Alignment explanation
Indices: 5912452--5912503 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
5912442 CGATCCGATT
5912452 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
5912478 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
5912504 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:5913592 original size:4 final size:4
Alignment explanation
Indices: 5913583--5913607 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
5913573 GAAACGAGCA
5913583 GGCG GGCG GGCG GGCG GGCG GGCG G
1 GGCG GGCG GGCG GGCG GGCG GGCG G
5913608 TACGCCGGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.24, G:0.76, T:0.00
Consensus pattern (4 bp):
GGCG
Found at i:5914303 original size:26 final size:26
Alignment explanation
Indices: 5914252--5914304 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5914242 CTGGTCCGAT
*
5914252 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
5914278 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
5914304 C
1 C
5914305 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:5917648 original size:26 final size:26
Alignment explanation
Indices: 5917608--5917660 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5917598 CTGGTCCAAT
5917608 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
* *
5917634 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
5917660 C
1 C
5917661 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:5918539 original size:26 final size:26
Alignment explanation
Indices: 5918510--5918562 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5918500 TCGGTCCGAT
*
5918510 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
5918536 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
5918562 C
1 C
5918563 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:5919435 original size:26 final size:26
Alignment explanation
Indices: 5919399--5919451 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5919389 CCAGTTTGAT
5919399 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5919425 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5919451 C
1 C
5919452 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5919860 original size:881 final size:885
Alignment explanation
Indices: 5917515--5919952 Score: 3244
Period size: 902 Copynumber: 2.7 Consensus size: 885
5917505 CCCCCGACGT
*
5917515 TGCTCCGACGATGGTGCCCC-AGCAAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATG
1 TGCTCCGACGATGGTGCCCCGAG--AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * * *
5917579 TGCT-GTCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGAAATGAACTCCGTATGCTTAGATTG
64 TGCTACT-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* **
5917643 GGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGATGCTCAGCCGGCCAGAG
128 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * *
5917708 GGGCGGGATGCGCAAG-CTGTGGATCGACCAGGTCCCCCTCTACATGCTACAGATCCTGCTACCG
193 GGGCGGGATGCGTAAGCCAG-GGATCGACCGGGTCCCCCTCTACATGCTACCGATCCTGCTACCG
* * *
5917772 TAACCCCCAGT-TCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC-ATCG
257 TAACCCTCAGTCT-GGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGA-CG
* * * * *
5917835 AAACGATCGGGCGAGCGGGCAGGCGGGCACTAAGCCGACCAGAGAGACGGGAAGCGTAAGCCGTG
320 -AA--AT-----GAACGGGCGGGCGGGCACTAA-CCGGCCAGAGAGACGGGATGCGCAAGCCGTG
*
5917900 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTA
376 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTT-
* * **
5917965 AT-GCTTGGAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGATAACTC
440 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
5918029 ATTTTTTATTTTTCATG-TTTTTCAAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTCGA
505 ATTTTCTATTTTTCATGATTTTT-GAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTTGA
* *
5918092 AAGGACTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAA
568 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAA
5918157 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAAA
633 TTCAGCTAAAAACTCGAAGTGTACAAGA---TGTGACCATTTCAAAAAAGTGTCCCCATTTCAAA
* *
5918222 CACTTTAATGGCTATGGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
695 CACTTTAATGGATATGGCCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* **
5918287 TTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATTGCACATCAT
760 TCAAGGTTTGATGAGGGATACAGGGCCAATATAAGGGCCAAGCACCAGCACCCATTGCACATCAT
** * * * * *
5918352 GTGCGCACACCCCCCAGCCCTCCCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCAGTG
825 GTGCGCACA--CCCCA-CCCT--CGATCACCGAAACCACAATGCCGCCAGTCAGGTTCTCCAGTG
5918417 A
885 A
* * * *
5918418 TGCTCCGACGATGGTGCCCCGACAAAGAAAAATGTGGCA-CAGCACATGCCCGAGCCCAACATAT
1 TGCTCCGACGATGGTGCCCCGA-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * *
5918482 -CCAGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
65 GCTA-CTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * * * *
5918546 GAATGAACTCCATATGCCTAAGTCAACCCATGTAACGAGCGTGCGAGCACACAGCCGCCCAGAGG
129 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* ** * * * ****
5918611 GGCGGGATAC-TCAAGCTGGGGATCGACCGGGTGCCCCTCTACGTGCTGCCGATCCTGCTTTTAT
194 GGCGGGATGCGT-AAGCCAGGGATCGACCGGGTCCCCCTCTACATGCTACCGATCCTGCTACCGT
* * * * * *
5918675 GACCCTCAATCCGATCCGATCTAAGACTAGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAA
258 AACCCTCAGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * *
5918740 CGAGCGAGCGAGCGGGCGGACCGGCACT-ACGTCGGCCAGAGAGACGGGATGTGCAAGTCGTGGA
323 TGA---A-CGGGCGGGC-G---GGCACTAAC--CGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
5918804 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTGCTGTGTGCCAATGCCAATTTTATG
378 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATG
* *
5918869 GCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
443 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATT
* * *
5918934 TTCTATTTTTCATGATTTTTGAAACTTTTTAGGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGA
508 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGA
5918999 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAG
573 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAG
* *
5919064 CTAAAAACTCGAAGTGTAC-A-A-GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
638 CTAAAAACTCGAAGTGTACAAGATGTGACCATTTCAAAAAAGTGTCCCCATTTCAAACACTTTAA
*
5919126 TGGATACTGG-CAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
703 TGGATA-TGGCCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGT
* ** *
5919190 TTGATGTGGGATACAGGGTGAATATAAGGGCCAAGCACCAGCACCCATTGCACATCATGTGCGTA
767 TTGATGAGGGATACAGGGCCAATATAAGGGCCAAGCACCAGCACCCATTGCACATCATGTGCGCA
* ** *
5919255 CA-CCC-CCCT-GATCACCGAAACGATGATGCCGCCAGTCAGGTTCTCCGGTGA
832 CACCCCACCCTCGATCACCGAAACCACAATGCCGCCAGTCAGGTTCTCCAGTGA
* * * *
5919306 TGCTCCGGCGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATTCCAGAGCCCAGCATGT
1 TGCTCCGACGATGGTGCCCCGA-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* **
5919371 GCTACTGCAACCCTCGGTCCAGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
65 GCTACTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* *
5919436 AGTGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
130 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* *
5919501 GCGGGATGCGTAAGCCAGGGATC-AGCCGGGTCCCCCTCTGCATGCTACCGATCCTGCTGCCGTA
195 GCGGGATGCGTAAGCCAGGGATCGA-CCGGGTCCCCCTCTACATGCTACCGATCCTGCTACCGTA
* *
5919565 ACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAT
259 ACCCTCAGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAT
* *
5919630 GAACGGGCGGGTGGGCACTATACCGGCCGGAGAGGA-GGGATGCGCAAGCCGTGGATCGATAGGG
324 GAACGGGCGGGCGGGCACTA-ACCGGCCAGAGA-GACGGGATGCGCAAGCCGTGGATCGATAGGG
* * * *
5919694 TGGTAAGTGGGTTTAGGTATATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGTTTGTAAA
387 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAA
*
5919759 TTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCATTTTCTATTTT
452 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTT
* *
5919824 TCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTATTGGCC
517 TCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCC
* * *
5919889 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGTCAGCTAAAAAC
582 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAAC
5919953 CCCAATGCCG
Statistics
Matches: 1345, Mismatches: 161, Indels: 80
0.85 0.10 0.05
Matches are distributed among these distances:
881 283 0.21
882 2 0.00
883 2 0.00
884 1 0.00
885 7 0.01
886 1 0.00
888 66 0.05
889 240 0.18
890 3 0.00
891 4 0.00
893 3 0.00
894 2 0.00
896 156 0.12
897 3 0.00
898 7 0.01
899 2 0.00
900 2 0.00
901 7 0.01
902 513 0.38
903 40 0.03
904 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (885 bp):
TGCTCCGACGATGGTGCCCCGAGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
CTACTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
CGGGATGCGTAAGCCAGGGATCGACCGGGTCCCCCTCTACATGCTACCGATCCTGCTACCGTAAC
CCTCAGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGA
ACGGGCGGGCGGGCACTAACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
AGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAT
GATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAA
ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAA
GTGTACAAGATGTGACCATTTCAAAAAAGTGTCCCCATTTCAAACACTTTAATGGATATGGCCAG
CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAC
AGGGCCAATATAAGGGCCAAGCACCAGCACCCATTGCACATCATGTGCGCACACCCCACCCTCGA
TCACCGAAACCACAATGCCGCCAGTCAGGTTCTCCAGTGA
Found at i:5920103 original size:26 final size:26
Alignment explanation
Indices: 5920065--5920117 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5920055 CCAGTTCGAT
5920065 CTTACACTAGGAATGAACTCTGTATG
1 CTTACACTAGGAATGAACTCTGTATG
* *
5920091 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTAGGAATGAACTCTGTATG
5920117 C
1 C
5920118 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCTGTATG
Found at i:5921848 original size:26 final size:25
Alignment explanation
Indices: 5921819--5921870 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
5921809 CCAATCCGAT
*
5921819 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACT-CGTATG
5921845 CTTAGACTAGGAATGAACTCGTATG
1 CTTAGACTAGGAATGAACTCGTATG
5921870 C
1 C
5921871 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGACTAGGAATGAACTCGTATG
Found at i:5924280 original size:878 final size:871
Alignment explanation
Indices: 5920406--5926303 Score: 6658
Period size: 919 Copynumber: 6.6 Consensus size: 871
5920396 TTCTACATGC
* * *
5920406 CAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTTTATTTTTCATGA
1 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * *
5920471 TTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
66 TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * *
5920536 TTGGTAGACATGATCCTTGTATTTTTTTTCGCATGCAAAAAAAAATTCATCTAAAAACTCAAAGT
131 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGT
* * * *
5920601 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAAACACTTTAATTGTTACTGGCA
196 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
5920666 GCAAACCTGTAAAATCTCAAATGCTCTCTAA-GGGGTGTGAGTTCTCGAGGTTTGATAAGGGATA
261 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
5920730 GGTGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCTCCGGCC
326 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCC
* * * * * *
5920795 CCCTCGATTGCCGGAACCCCAA---TGTC-GTCA-G---T-CAGG-TTCTCCGACGA---TGCTC
390 CCCCCGATCGTCGAAACCCCAATGCTGTCAGTCAGGTTCTCCAGGATGCTCCGACGATGGTGCCC
* * ** * * *
5920847 CGGCGAAGAAAAATGTGGTACCAGCACATGCTTGAGCCAAGCATGTGCTGCAGCAACCCTTGGTC
455 CGGC-AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTAGGTC
* *
5920912 TGGTCCT-ATGTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGCCATATCCCTAAGTCAAC
519 T-G-ACTGATCTTAGACTGGGAATGAACTCC----G--T--A-T--G-------CCTAAGTCAAC
** * * * *
5920976 CCACGAAACGAGCATGCGGGCGCTCAGCC-AGCCAGAGGGAAGGGACGTGCAAGTCGAGGATAGG
564 CCACGAAACGAGCATGCGGGCGCTCAGCCGA-CCAGAGGGGCGGGATGCGCAAGTCGGGGATCGG
** * * * *
5921040 CCGGGTTTCCCTCTGCGAGCTACCGATCCTACTATCGTAACCCTCAGTCCGGTCTGATCTTAGAC
628 CC-GGTCCCCCTCTGCGTGCTGCCGATCCTACTATCGCAACCCTCAGTCTGGTCTGATCTTAGAC
* * * *
5921105 TGGGAATGGACTCCGTATGCTTAAGCCAACCGATGAAATGAACGGGCGGGCGGACGGGTGGGCGG
692 TGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGGCGGGC--A--GGCGGGC-G
* * * * * *
5921170 GCGTTACCCGGCCA-AAAGACGGAATGCGCAAGTCGTGGATCGATAAGGTGGTAGGTGGGTTTAG
752 GCGCTACTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
5921234 GCACATATTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTCTAAATTCATA
817 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
5921289 CAATGG-CCCTTTAAGCCTTCACATGATGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
1 CAATGGTCCC-TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* *
5921353 ATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTCTTTCGGAAGGAGTTTTGGCCCCAAA
65 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * * * * * *
5921418 CTAGGTAGAGGTGCTCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGCAG
130 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAG
* * *
5921483 TGTACAAGATTTTGTGACCATTTGAAAAAAGAGTTCCCA-TTCAAGACACTTTATTGGCTACTGG
195 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGG
*
5921547 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGATCTCGAGGTTTGATGAGGGA
259 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
5921612 TAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGG
324 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG
* * * * * *
5921677 CCCCCCCGATCGTCGTAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATAGTG
388 CCCCCCCGATCGTCGAAACCCCAATGCTGTCAGTCAGGTTCTCC-AGGATGCTCCGACGATGGTG
* * * * * *
5921742 CCCCGGTGAAGAAAAATGCAGCGCCAGCACATGCCTGTGCCCAGCATGTGCGGCCACAACCCTCG
452 CCCCGG-CAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG--------C-CG
** *
5921807 ATCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACT-CGTATGC
507 ---CAA-CC---C-T--A---GGTCTG-ACT--G-AT-CTTAGACTGGGAATGAACTCCGTATGC
* * * * *
5921871 CTAAGTCAACCCACGACACGAGCACGCGGGCGCTCTGCCGACCAGAGGGGCGGGATGAGCAAGCC
554 CTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGTC
* * * * ** * ** *
5921936 GGGGATTGACCAGGTCCCCCTCTGCATGTTGCCGATCCTACTGCCGTAACCCTTGGTTTGGTCTG
619 GGGGATCGGCC-GGTCCCCCTCTGCGTGCTGCCGATCCTACTATCGCAACCCTCAGTCTGGTCTG
* * *
5922001 ATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAATGAGCGGGAGGGCAGGCG
683 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGGCGGGCAGGCG
* ** *
5922066 GGCGGGCGGGC-ACTGCGCCGACAAGAGAGACGGGATGCATAAGCAGTGGATCGATAGGGTGGTA
748 GGC-GGC--GCTACT-CG--G-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
5922130 GGTGGGTTTAGGCACATCTACATATTTCTGCGTGCCAATGCCATTTTTATGCCTTGTAAATTCAT
806 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
5922195 A
871 A
* *
5922196 CAATGGTGCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTCATGA
1 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
** * ** * * * * *
5922261 TTTTCAAAACCTTTTGTAGTTTGAGATTTTTTACAATTTTTTTGGAAGGAGTTTTAGCCCCAAAC
66 TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * * * *
5922326 TTGGTAGATGTGATGCTTGTATTTTTGTTGGCATGCATAAAAACATTCAGCTAAAAACTTGAAGT
131 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGT
* *
5922391 GTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCA
196 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
5922456 GCAAACCTATAAAATCTCAAAAGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
261 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
5922521 GGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCCTGGCCC
326 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
* * * * *
5922586 CCCCAATCGTC-AGAACCCCAATG-TCGCCAGTCAGGTTCTCCGGCGATGCTTCGGCGATGGTGC
391 CCCCGATCGTCGA-AACCCCAATGCT-GTCAGTCAGGTTCTCCAG-GATGCTCCGACGATGGTGC
* ** * * *
5922649 CCCGACGAAGAAAAATATGGCACCAGCACATGCTCGAGCCCAACATGTGCTGCCGCAACCCTTGG
453 CCCGGC-AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTAGG
* * *
5922714 T-TCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCTTG
517 TCT-GA-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATG
* * * * *
5922778 CGGGCGCTCAGCC-AGCCAGAGGGGTGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGT
580 CGGGCGCTCAGCCGA-CCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCC-GGTCCCCCTCTGC
* * * * * * * * *
5922842 GTGCTGCCGATCCT-GTGTTGCAACCCTCAATCCGATCTGATCTTAGGCTAGGATTGAACTCCGT
643 GTGCTGCCGATCCTACTATCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGT
* * *
5922906 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCGGG-GGCACTACGTCGGCCAGAGAGA
708 ATGCCTAAGCCAACCGATGAAATGAGCGGGCGGGCAGGCGGGCGGCGCTAC-TCGGCCAGAGAGA
*
5922970 CGGGATGCGCAAGCGGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
772 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
*
5923035 ATGCCAGTGCCATTTTTATGGCTTGTAAATTCATA
837 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * * *
5923070 CAATGGTCCCTGAAGCCTTCACGTGGAGGTTCATGGCAAGACGGCTTGTTTTCTATTTTTCATGA
1 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* *
5923135 TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTGGGCCCCAAAC
66 TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * *
5923200 TTGGTAGACGTGATCCTTATATTTTTTTTGGCATGCAAAAAAAAAAAATTCAGCGAAAAACTCAA
131 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC---AAAAAAAAATTCAGCTAAAAACTCGA
* *
5923265 AGTGTACAAGATTTTGTGACCCTTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTG
193 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
5923330 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTCAAGGATTGATGAGGG
258 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
5923395 ATAGGGGGCCAATATTAGGGCCAAGTACCAGCACCAATCGCACATCATGAGCGCACACCTGCCCC
323 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC--CCCC
* * *
5923460 GGCCCCCCCGATCGTCGAAACCCCGATGCTGTCAGTCAGGTTCTCCAGTATTGCTCCGGCGATGG
386 GGCCCCCCCGATCGTCGAAACCCCAATGCTGTCAGTCAGGTTCTCCAGGA-TGCTCCGACGATGG
* * * *
5923525 TGCCCCGGCAACGAAAAATGTGACACCAGCACATGCCCAAGCCCAGCATGTGCTACCGCAACCCT
450 TGCCCCGGCAA-GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * *
5923590 AGGTCATG-CTAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAAGAGCG
514 AGGTC-TGACTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCA
* ** *
5923654 TGCGAGCTATCAGCCGACCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGATCCCTCTCTG
578 TGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGG-TCCCCCTCTG
* * *
5923719 TGTGCTGCCGATCCTACTATCGGAACCTTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCG
642 CGTGCTGCCGATCCTACTATCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCG
*
5923784 TATGCCTAAGCCAACCGATGAAATGAGCGGGCGGGCGGGCGGGTCGGCGCTACATCGGCCAGAGA
707 TATGCCTAAGCCAACCGATGAAATGAGCGGGCGGGCAGGCGGG-CGGCGCTAC-TCGGCCAGAGA
* * * *
5923849 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGAAGGTGGGCTTAGTCACATCATCATATTTCT
770 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* * *
5923914 TCATCCCAATGGCATTTTTATGGCTTGTAAATTCATA
835 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
5923951 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
1 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * * * *
5924016 TTTTCGAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAAC
66 TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * *
5924081 TTGATAGACGTGATCCTTGCATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
131 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGT
5924146 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
196 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * * *
5924211 GCAAACCTGTAAAATCTCAAATGCTCTTGAAAGGGGTGTGAGATCTCAAGGTTTGATGAGGAATA
261 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * * *
5924276 GGGGGCCAATGTAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCACACACCCCTCCCGAC
326 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCC
* * ** * *
5924341 CTCCCGATC-ACTGAAACCCCAATGCCATCCGATCAGGTTCTCCAGCGAAGCTCCGACGATGGTG
390 CCCCCGATCGTC-GAAACCCCAATGCTGTCAG-TCAGGTTCTCCAG-GATGCTCCGACGATGGTG
* * * * * *
5924405 TCCCGATCAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCGGCCGCAACCCTCG
452 CCCCG-GCAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTAG
* * * *
5924470 GTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTTCGTACGC
516 GTCTGA-CTGATCTTAGACTGGGAATGAACTCCGTATGC-----CT-A-AGTCAAC--C-CACG-
* * * * * *
5924535 TTAGACTGGGAATGAACTCCGTATGC-CTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAAC
569 --AAAC---G-A-GCA-TGCG--GGCGC----TC-A-GC-CG--AC---CA-GAGGG-G-----C
* * * * * *
5924599 TGGCCAGAGGGGCGAGATGTGCAAGCCAGGGATCAGTCGGGTCCCTCTCTGCGTGCTGCCGATCT
605 -GG---GATGCGC-A-A-GT-C--G---GGGATC-GGCCGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
5924664 TGCT-GCTGCAACCCTCGGTCTGGTCCGATCTTAAACTGGGAATGAACTTCGTATGCCTAAGCCA
656 TACTATC-GCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** *
5924728 ACCGACGAAACGAGCGGGCGGGCA------CAACG----TCGGCCAGAGAGACGGGATGTGCAAG
720 ACCGATGAAATGAGCGGGCGGGCAGGCGGGCGGCGCTACTCGGCCAGAGAGACGGGATGCGCAAG
*
5924783 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTGCATGCCAATGCCAT
785 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
5924848 TTTTA-GCGCTTGTAAATTCGTA
850 TTTTATG-GCTTGTAAATTCATA
*
5924870 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
1 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
** ** ** * * * * *
5924935 TTTTCAAAACTTTTTGTAGTTCAAGATTTTTTAAACTTTTTTTGGATGGATTTTTTGCCCCAAAC
66 TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * * *
5925000 TTGGTAGATGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGT
131 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGT
* * *
5925065 GTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTAGCA
196 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
5925130 GCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAAGAGGGATA
261 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
5925195 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCAACGCACATCATGTGGGCACACCCCCCGTGGC
326 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC--GGC
* * * ** *
5925260 CCCCCCGATCGTCGGAACCCCAATG-TCGCCGGTCAGGTTCTCTGGCGATGCTCCGACAATGGTG
389 CCCCCCGATCGTCGAAACCCCAATGCT-GTCAGTCAGGTTCTCCAG-GATGCTCCGACGATGGTG
* * * * *
5925324 CCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCG
452 CCCCGGC-AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTAG
* * * * *
5925389 GTCTGATCCGATGTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACGCACGAAACGAGCTTG
516 GTCTGA-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATG
* * * * * * *
5925454 CGGGCGCTCAGTCGGCCAGAGGGGTGGGATGCGCATGTTGGGGATCGATCAGGTCCCCCTCTGCG
580 CGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGTCGGGGATCG-GCCGGTCCCCCTCTGCG
* * * * * * *
5925519 TGCTACCGATCC--CGTACCGCAACCCTCGGTCTGCTCCGATCTTAGACTAGGAATGAGCTCCGT
644 TGCTGCCGATCCTAC-TATCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGT
* **
5925582 ATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCAGGC-GGCCACGACTACGTCGGCCAGAGAG
708 ATGCCTAAGCCAACCGATGAAATGAGCGGGCGGGCAGGCGGGCGGCG-CTAC-TCGGCCAGAGAG
* **
5925646 ATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTGTATTTCTG
771 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
5925711 CATGCCAGA-GCCATTTTTATGGCTTGTAAATTCATA
836 CATGCCA-ATGCCATTTTTATGGCTTGTAAATTCATA
* * * *
5925747 CAATGGTCCCTGAAGCCTTCACGTCG-AGGTTCATGGCAGGACGACTCGTTTTCTATTTGTCATG
1 CAATGGTCCCTTAAGCCTTCACGT-GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* * * *
5925811 ATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAACATTTTTTCGAAAGGAGTTTGGGCCCCAAA
65 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * *
5925876 CTTGGTAGACGTGATCCTTATA-TTTTTTTGGCATGCAAAAAAAAATTCGGCTAAAAACTCAAAG
130 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAG
* * *
5925940 TGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTAGC
195 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
5926005 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAT
260 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
5926070 AGGGGGCCCATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCGCCCTGG
325 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCC-GG
* ** * * * *
5926135 CCCCCCAGATCACCGGAACCCCAATGCTGTCGGTCAGGTTCTCC-GGCAATGCTCTGGCGATGGT
388 CCCCCCCGATCGTCGAAACCCCAATGCTGTCAGTCAGGTTCTCCAGG--ATGCTCCGACGATGGT
*
5926199 GCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTA
451 GCCCCGG-CAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTA
*
5926264 GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
515 GGTCT-GACTGATCTTAGACTGGGAATGAACTCCGTATGC
5926304 TTAGACTGGG
Statistics
Matches: 4306, Mismatches: 535, Indels: 355
0.83 0.10 0.07
Matches are distributed among these distances:
865 1 0.00
866 77 0.02
867 32 0.01
870 1 0.00
871 4 0.00
873 2 0.00
874 245 0.06
875 3 0.00
876 369 0.09
877 467 0.11
878 409 0.09
879 228 0.05
880 98 0.02
881 363 0.08
882 6 0.00
883 257 0.06
884 109 0.03
885 6 0.00
886 9 0.00
887 5 0.00
888 5 0.00
889 5 0.00
890 2 0.00
892 5 0.00
893 3 0.00
894 6 0.00
895 13 0.00
896 1 0.00
897 3 0.00
898 50 0.01
899 1 0.00
900 5 0.00
901 11 0.00
902 3 0.00
903 7 0.00
904 1 0.00
905 161 0.04
906 108 0.03
907 432 0.10
908 6 0.00
909 3 0.00
910 3 0.00
911 4 0.00
912 10 0.00
913 2 0.00
914 4 0.00
915 2 0.00
917 1 0.00
918 5 0.00
919 584 0.14
920 26 0.01
921 1 0.00
922 5 0.00
923 4 0.00
924 21 0.00
925 2 0.00
926 1 0.00
928 1 0.00
930 1 0.00
931 103 0.02
932 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (871 bp):
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
CCCCGATCGTCGAAACCCCAATGCTGTCAGTCAGGTTCTCCAGGATGCTCCGACGATGGTGCCCC
GGCAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTAGGTCTG
ACTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCG
CTCAGCCGACCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGTCCCCCTCTGCGTGCTGCC
GATCCTACTATCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
GCCAACCGATGAAATGAGCGGGCGGGCAGGCGGGCGGCGCTACTCGGCCAGAGAGACGGGATGCG
CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
CCATTTTTATGGCTTGTAAATTCATA
Found at i:5924511 original size:26 final size:26
Alignment explanation
Indices: 5924482--5924560 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
5924472 CTGATCCGAT
5924482 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
5924508 CTTAGACTGAGAATGAACTTCGTACG
1 CTTAGACTGGGAATGAACTCCGTATG
5924534 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5924560 C
1 C
5924561 CTAAGTCAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5926313 original size:26 final size:26
Alignment explanation
Indices: 5926277--5926355 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
5926267 CTGGTCTGAT
5926277 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
5926303 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCGTATG
5926329 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5926355 C
1 C
5926356 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5926988 original size:26 final size:26
Alignment explanation
Indices: 5926959--5927011 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5926949 CTGATCCGAT
*
5926959 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
5926985 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5927011 C
1 C
5927012 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5927334 original size:25 final size:26
Alignment explanation
Indices: 5927295--5927344 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 26
5927285 GGTTCGAACA
5927295 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
5927321 TAGACT-GGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
5927345 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:5928072 original size:26 final size:26
Alignment explanation
Indices: 5928036--5928088 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5928026 TTGATCCGAT
*
5928036 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5928062 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5928088 C
1 C
5928089 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5928975 original size:26 final size:26
Alignment explanation
Indices: 5928939--5928991 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5928929 CTGGGTCAAT
* *
5928939 CTTAGATTGGGAATGATCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5928965 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5928991 C
1 C
5928992 GGGCCAAGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5929221 original size:26 final size:26
Alignment explanation
Indices: 5929181--5929233 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5929171 CCGGTCCGAT
* *
5929181 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
5929207 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
5929233 C
1 C
5929234 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:5930133 original size:26 final size:26
Alignment explanation
Indices: 5930083--5930134 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
5930073 TGGTCTGATA
* *
5930083 TTAGACTGGGAATGAACTGCATATGC
1 TTAGACTAGGAATGAACTCCATATGC
*
5930109 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCATATGC
5930135 CTAACTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGC
Found at i:5932086 original size:26 final size:26
Alignment explanation
Indices: 5932052--5932103 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
5932042 TTTTCTATTT
* *
5932052 TTCATGATTTTTGAAACTTTTTTCGG
1 TTCAAGATTTTTGAAAATTTTTTCGG
*
5932078 TTCAAGATTTTTTAAAATTTTTTCGG
1 TTCAAGATTTTTGAAAATTTTTTCGG
5932104 AAGGAGTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.10, G:0.13, T:0.54
Consensus pattern (26 bp):
TTCAAGATTTTTGAAAATTTTTTCGG
Found at i:5932944 original size:720 final size:706
Alignment explanation
Indices: 5931161--5933110 Score: 2709
Period size: 706 Copynumber: 2.7 Consensus size: 706
5931151 GGTGGACGGA
**
5931161 CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTTATAGGT
1 CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
5931226 GGGTTTAGGCACATCTTCATATTTATGCATGCCAATGCCATTTTTATGGATTGAAAATTCATACA
66 GGGTTTAGGCACATCTTCATATTTATGCATACCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
5931291 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTCTTC-CTGAT
131 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCAC-GAT
** * * *
5931355 TTTTGAAACTATTTCCGGTTCGGGATTTTTTAAAATTTTTTAGGAACGTGTTTTGGC-CCAAAAC
195 TTTTGAAACT-TTTTTGGTTCGGGATTTTTTAAAATTTTTTAGGAAGGAGTTTTGACACC-AAAC
* *
5931419 TTGGTAGACATGGTCCTTGTATTTTTGTTGGCATGCAGAAAAAAATTCAGCTAAAAACTCGAAGT
258 TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * *
5931484 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACGCTTTAATGGCTACTGGCA
323 GTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * *
5931549 GCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCACGAGGTATGATGAGGGATA
388 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
*
5931614 GGGGGCCAATATAAGGGCCAAGTAACAGCACCCATCGCACATCATGTGCGCACACGCCCCCGGCC
453 GGGGGCCAATATAAGGGCCAAGTTACAGCACCCATCGCACATCATGTGCGCACACGCCCCCGGCC
* *** * *
5931679 CCCCGATCATCGGAACCCCAATGCCGTTGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCT
518 CCCCGATCATCGAAACCCCAATGCCACCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCC
* * * * * *
5931744 CGACGAAGAAAAATACGGCACTAACACATGCTCGAGCCCAGCTTGTGCTGCCGCAACCCTCGGTC
583 CGACAAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCAGAAACCCTCGGTC
* * * *
5931809 TAGTCTGATCTGAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGT
648 TAGTCTGATCTGAGACTCGAAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGT
5931868 -GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
1 CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * *
5931932 GGGTTTAGGCACATCTTCATATTTCTGCATCCCAATGCCATTTTTATGGCTTTTAAATTCATATA
66 GGGTTTAGGCACATCTTCATATTTATGCATACCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * * *
5931997 ATGGTCCCTTAAGCCTTCACATGATGTTGCATGGCAAGACGACT-GTTTTCTATTTTTCATGATT
131 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATT
** *
5932061 TTTGAAACTTTTTTCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGA-ACCAAACT
196 TTTGAAACTTTTTT-GGTTCGGGATTTTTTAAAATTTTTTAGGAAGGAGTTTT-GACACCAAACT
* *
5932125 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAACAAAAAAA-TCAGGTAAAAACTCGAAGT
259 TGGTAGACATGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGT
5932189 GTACAAGATTTTTGTGACCATTTGAAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGG
323 GTACAAGA-TTTTGTGACCATTT-AAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
5932253 CAGCAAACCTGTAAAATCTCAAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGGAAGAGG
386 CAGCAAACCTGTAAAATCTC-AAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT-GATGAGG
**
5932318 GATAGGGGGCCAATAT-AGGGCCAAGTTACTAGCACCCATCGCACATCATGTGCGCAC-C-CTTC
449 GATAGGGGGCCAATATAAGGGCCAAGTTAC-AGCACCCATCGCACATCATGTGCGCACACGCCCC
* *
5932380 CGGCCCCCCCGATCATCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTTCGACGATG
513 CGG-CCCCCCGATCATCGAAACCCCAATGCCACCGGTCAGGTTCTCCGATGATGCTCCGACGATG
* * * *
5932445 GTGCCCCGGCAAAGAAAAATACGGCACCAGCACATGCCCTAGCGCAGCATGTGCTGCAGAAACCC
577 GTGCCCCGACAAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCAGAAACCC
* * * *
5932510 TCGGTCCTGGTCTGATCTTAGAC-CGAAATGAACTCCGTATTGCCTAAGTCAACCCACAAAATGA
642 TCGGT-CTAGTCTGATCTGAGACTCGAAATGAACTCCGTA-TGCCTAAGCCAACCCACAAAACGA
5932574 GCAT
705 G--T
*
5932578 GCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGG
1 ---------CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * * *
5932643 GTGGTTGGTGGGTTTAGGAACATCTCCATATTTATGCGTACCAATGCCATTTTTATGGCTTGTAA
57 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCATACCAATGCCATTTTTATGGCTTGTAA
*
5932708 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTTTATTT
122 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTT
** * * *
5932773 TTCACGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTTGAAATTTTTTAGAAAGGGGTTTTGA
187 TTCACGATTTTTGAAACTTTTT-TGGTTCGGGA-TTTTTTAAAATTTTTTAGGAAGGAGTTTTGA
* * * *
5932838 CACCAAACTTGGTCGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTGATCTAAAAA
250 CACCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
*
5932903 CTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGA
315 CTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * * * * * * *
5932968 TACTGGCAGCAAACCTGCAAAAACTCAAATCCTCTTTAAGGAGGTTTGAGTTCTCTATGTTTTAT
380 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
* * * * * *
5933033 GAAGGATAGGGGGCCAATATAAGGGCCAAG-TACCAGCACCCACCACACATCATTTGCACACACC
445 GAGGGATAGGGGGCCAATATAAGGGCCAAGTTA-CAGCACCCATCGCACATCATGTGCGCACACG
5933097 CCCCACGGCCCCCC
509 CCCC-CGGCCCCCC
5933111 CAGATCGTCG
Statistics
Matches: 1098, Mismatches: 109, Indels: 58
0.87 0.09 0.05
Matches are distributed among these distances:
704 3 0.00
705 122 0.11
706 238 0.22
707 183 0.17
708 85 0.08
710 1 0.00
719 45 0.04
720 213 0.19
721 115 0.10
722 93 0.08
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (706 bp):
CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTATGCATACCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATT
TTTGAAACTTTTTTGGTTCGGGATTTTTTAAAATTTTTTAGGAAGGAGTTTTGACACCAAACTTG
GTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
CAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
GGCCAATATAAGGGCCAAGTTACAGCACCCATCGCACATCATGTGCGCACACGCCCCCGGCCCCC
CGATCATCGAAACCCCAATGCCACCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGA
CAAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCAGAAACCCTCGGTCTAG
TCTGATCTGAGACTCGAAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGT
Found at i:5935141 original size:711 final size:709
Alignment explanation
Indices: 5933367--5935533 Score: 3094
Period size: 707 Copynumber: 3.0 Consensus size: 709
5933357 CTTGGCGGCG
* * ** *
5933367 GTCTGATCTTAGACAGGGAATGAACTCCGTATGCC-AAGCCAACTGATGAAATGAGTGGGCGGAC
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGA-CAAATGAACGGGCGGGC
* * * *
5933431 GGACGGGCGAGCATACG-CAGCCAAGAAGAC-CGGGATGCGCAAGCAGTGGATTGATAGGTTGTA
65 GGGC-GG-GA-C-TACGTCAGCC-AG-AGACACGGGATGCGCAAGCCGTGGATCGATAGGTGGTA
* *
5933494 GGTGGGTTTAGGCACATCTTCATATTTATGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
124 GGTGGGTTTAGGCACATCTTCATATTTCTGAGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
5933559 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATG
189 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATG
* * * * *
5933624 ATTTTTGAAACTATTTCCGGTTCGGGATTTTTTAAAATTTTTTAGGAAGGCGTTTTGGCCCAAAA
254 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
5933689 CTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
319 CTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
5933754 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGC
384 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
5933819 AGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCAT-GAGGTATGATGAGGGA
449 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGGTTTGATGAGGGA
5933883 TAGGGGGCCAATATAAGGGCCAAGTAAC-AGCACCCATCGCACATCATGTGCGCACACCCCCCCG
513 TAGGGGGCCAATATAAGGGCCAAGT-ACTAGCACCCATCGCACATCATGTGCG-ACA-CCCCCCG
* * * *
5933947 GCCCCCTCGATCATC-AGAACCCCAATGCCGTCGGTCAGGTTCTCCAACGATGCTCCGGCGATGG
575 GCCCCCCCGATCATCGA-AACCCCAATGCCGTCGGTAAGGTTCTCCGATGATGCTCCGGCGATGG
* * ** *
5934011 TGCCTCAACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCTTGTGCTGCCGCAACCCT
639 TGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCCAGCCCAGCTTGTGCTG-CGCAACCCT
5934076 CGGT-CT
703 CGGTCCT
* * * *
5934082 GGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGAC-GA--AACGAGCGGGC
1 -GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACAAATGAACGGGCGGGC
* * *
5934144 GGGC---ACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATATGGTGGTAGGTGG
65 GGGCGGGACTACGTCAGCCAGAGACACGGGATGCGCAAGCCGTGGATCGATA-GGTGGTAGGTGG
* * *
5934206 GTTTAGGCACATCTTCATATTTCTGCA-TCCCAATGCCATTTTTATGGCTTTTAAATTCATATAA
129 GTTTAGGCACATCTTCATATTTCTG-AGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
5934270 TGGTCCCTTAAGCCTTCACATGATGGTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTT
193 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTT
*
5934335 TTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
258 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * * * *
5934400 GTAGACATGATCCCTGTATTTTTGTTGGCATGCACAAAAAAAATCAGGTAAAAACTCAAAGTGTA
323 GTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
5934465 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
388 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
5934530 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGATTTCTCGAGGTTTGAAGAGGGATAGGG
453 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
*
5934595 GGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCTTGTGCG-CACCCCCCGGCCCCCCC
518 GGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGACACCCCCCGGCCCCCCC
** * * * **
5934659 GATCATCGAAACCCCAATGCCACCGATTAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGAC
583 GATCATCGAAACCCCAATGCCGTCGGTAAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGAC
* * * * * *
5934724 AAAGAAAAATGTGGCACCAGCACATGCTCTAGCCTAGCATGTGCTGCAGAAACCCTC-GTCCT
648 GAAGAAAAATGTGGCACCAGCACATGCCCCAGCCCAGCTTGTGCTGC-GCAACCCTCGGTCCT
* * *
5934786 ATCCGATCTTAGACTGGGAATGAACCCCGTATGCCTAAGCCAACTGACAAAATGAACGGGCGGGC
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGAC-AAATGAACGGGCGGGC
*
5934851 GGGCGGGTACTACGTCAACCAGAGACACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
65 GGGCGGG-ACTACGTCAGCCAGAGACACGGGATGCGCAAGCCGTGGATCGATA-GGTGGTAGGTG
*
5934916 GGTTTAGGCACATCTCCATATTTCTGAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
128 GGTTTAGGCACATCTTCATATTTCTGAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
5934981 CGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTT
193 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTT
** ** * * * *
5935046 TCAAAACTTTTTGTGGCTCGGGATTTTTTTGAAATTTTTTCGAAAGG-GTTTTGACCCCAAACTT
258 TTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* *
5935110 GGTAGACATGATCCTTGCATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGT
322 GGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
5935175 ACAAGATTTTATGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGT
387 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
5935240 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGAGTGAGTTCTCGAGGTTTGATGAGGGATAGG
452 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
5935305 GGGCCAATATAAGGGCCAAGTA-TGAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
517 GGGCCAATATAAGGGCCAAGTACT-AGCACCCATCGCACATCATGTGCG-ACACCCCCCGGCCCC
** * * * *
5935369 CCTTATC-GCTGGAACCCTAATGCCGTCGGTAAGGTTCTCCGATAATGCTCCGGCGATGGTGCCC
580 CCCGATCATC-GAAACCCCAATGCCGTCGGTAAGGTTCTCCGATGATGCTCCGGCGATGGTGCCC
* ** *
5935433 TGGTGAAGAAAAATGTGACACCAGCACATGCCCCAGCCCAGCTTGTGCTGTCGCAACCCTCGGTC
644 CGACGAAGAAAAATGTGGCACCAGCACATGCCCCAGCCCAGCTTGTGCTG-CGCAACCCTCGGTC
*
5935498 CG
708 CT
*
5935500 GTCTGATCTTAGACTGGGAATGAACTCCATATGC
1 GTCTGATCTTAGACTGGGAATGAACTCCGTATGC
5935534 TTAGACTGGG
Statistics
Matches: 1290, Mismatches: 135, Indels: 54
0.87 0.09 0.04
Matches are distributed among these distances:
703 46 0.04
704 115 0.09
705 7 0.01
706 32 0.02
707 435 0.34
708 1 0.00
710 2 0.00
711 429 0.33
712 22 0.02
713 122 0.09
714 35 0.03
715 1 0.00
716 33 0.03
717 10 0.01
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (709 bp):
GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACAAATGAACGGGCGGGCG
GGCGGGACTACGTCAGCCAGAGACACGGGATGCGCAAGCCGTGGATCGATAGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTGAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTTTTG
AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
GACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGACACCCCCCGGCCCCCCCGAT
CATCGAAACCCCAATGCCGTCGGTAAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGACGAA
GAAAAATGTGGCACCAGCACATGCCCCAGCCCAGCTTGTGCTGCGCAACCCTCGGTCCT
Found at i:5937146 original size:26 final size:26
Alignment explanation
Indices: 5937117--5937167 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5937107 TGGTCCGATC
*
5937117 TTAGACTGGGAATGAACTCTGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
*
5937143 TTAGATTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
5937168 CCCAATTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:5941260 original size:26 final size:26
Alignment explanation
Indices: 5941224--5941299 Score: 152
Period size: 26 Copynumber: 2.9 Consensus size: 26
5941214 GCAATCTGAT
5941224 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5941250 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5941276 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
5941300 CGCCTAAGTC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5942947 original size:26 final size:25
Alignment explanation
Indices: 5942882--5942960 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 25
5942872 CTGGTCTGAT
*
5942882 CTTAGACTGGGAAATAACTCCGTATG
1 CTTAGACTGGG-AATAACTTCGTATG
5942908 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAAT-AACTTCGTATG
*
5942934 CTTAGACTGGGAATAAACTTTGTATG
1 CTTAGACTGGGAAT-AACTTCGTATG
5942960 C
1 C
5942961 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
25 3 0.06
26 46 0.94
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (25 bp):
CTTAGACTGGGAATAACTTCGTATG
Found at i:5943775 original size:928 final size:918
Alignment explanation
Indices: 5941276--5944737 Score: 4423
Period size: 893 Copynumber: 3.8 Consensus size: 918
5941266 ACTCCGTATG
* * * * * * * *
5941276 CTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCACGAAACAAGCGTGCGGACGGG-TG-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAA-GAGCGGGCGGGCGGGCGGA
* * ** * *
5941339 GGCACTACGTCGACCAGAGAGATAGGATGCGCAAGCCGTGGATCGATAGGGTGGTATGTGGGTTT
65 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATAGATAGGGTGGTAGGTGGGTTT
* * * * * *
5941404 AGGTACATCTTCATCTTTCTACGTGCTAATGCCATTTTTATGGATTGTAAATTCATACAATGGTC
130 AGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGATTGTAAATTCATACAATGGTC
* * * * *
5941469 CCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTCAAA
195 CCTTAAGCCTTCACGCGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAA
* * * * * *
5941534 ACTTTT-TACGGTTTGAGATTTCTTAAAATTTTTCAGAAGGATTTTTGGGC-CCAAACTTGGTAG
260 ACTTTTGT--GATTCGACATTTTTTAAAATTTTTCAGAAGGAGTTTT-GGCTGCAAACTTGGTAG
*
5941597 ACGTGGA-CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAA
322 ACGT-GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
5941661 GATTTTGTGATCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
386 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
5941726 CTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGAC
451 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG-C
* *
5941791 CAATATAAGGGCCATGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC-CCGA
515 CAATATATGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCCGA
* * * * *
5941855 TCGTTGAAACCCCAATGCCGTCGGTCAGGTTCTCTG-GCGATGC-TCTGGCGATGGTGCCCCGAC
580 TCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGAG-GATGCTTC-GGCAATGGTGCCCCGAC
* * * * * * *
5941918 GTAGAAAAATGCAGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCGGCAACC--C-TC---AG
643 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCTTCGTCGGTCG
* * * *
5941977 -TC-----C---G----A-TCCG-AT-CTTAGACTGGGAATAAACTCCGTAAGCTTTGACTGGGA
708 ATCTTAGACTGGGAATAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGA
* * *
5942026 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAGCCGGCCAGAGGGG
773 ATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTCAGCCGGCCAGAGGGG
* * * * * * * *
5942091 CGGGATGCGCAAGCTGGGGATCGATCGGGTGCCCCTCTACGTGCTATCGGTCTTGCTGCTGCAAC
838 CAGAATGCGCAAGCTGGGGATCGACCGGGT-CCCCTCTATGTGCTACCGATCCTGCTGCCGCAAC
** *
5942156 CCTCAGTCTAGTCTAAT
902 CCTTGGTCTGGTCTAAT
* * *
5942173 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAATCGACG-AA-A-CGAGCAGGCGGGC-GA-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAAGAGCGGGCGGGCGGGCGGAG
* *
5942233 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTA
66 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATAGATAGGGTGGTAGGTGGGTTTA
* * * * *
5942298 GGCACATCTTCATATTTCTATG--TGCCACTGCCAATTTTATGGCTTGTAAATTCATACAGTGGC
131 GGCACATCTTCATATTT-T-TGCATGCCAATGCCATTTTTATGGATTGTAAATTCATACAATGGT
* * * *
5942361 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACT-ATTTTCA
194 CCCTTAAGCCTTCACGCGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TGATTTTTA
* ** * ** * **
5942425 AAACTTTT-TACAGTTCGGGATTTTCTAAAATTTTTTGGAAGAAGTTTTGGCCCCAAACTTGGTA
258 AAACTTTTGT-GA-TTCGACATTTTTTAAAATTTTTCAGAAGGAGTTTTGGCTGCAAACTTGGTA
* *
5942489 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGGTAAAAACTCGAAGTGTACAA
321 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
5942554 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
386 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
5942619 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATACGGGCC
451 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGC
* *
5942684 CAATATAGGGGTCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCCGA
515 CAATATATGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCCGA
* * * * * *
5942749 TCGTCAGAACCCCAATGTCATTGGTCAGATTCTCCGACGATGCTTCGACAATGGTGCCCCGACGA
580 TCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGAGGATGCTTCGGCAATGGTGCCCCGACGA
* * *
5942814 AGAAAAATACGGCACTAGCACATGCTCGAGCCCAACATGTGCTACCGCAACCTTCAGTCTGGTCT
645 AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCTTC-GTC-GGTC-
5942879 GATCTTAGACTGGGAAATAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGG
707 GATCTTAGACTGGG-AATAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGG
** ** * *
5942944 GAATAAACTTTGTATGCCTAAGTCAACCCATAAAATGAGCGTGTGGGCACTCAGTCGGCCAGAGG
771 GAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTCAGCCGGCCAGAGG
* * *
5943009 GGCAGAATGCACAAGCTGGGGATCGACCGGGTCCCCTTCTATGTGCTACCGATCCTGTTACCGCA
836 GGCAGAATGCGCAAGCTGGGGATCGACCGGGTCCCC-TCTATGTGCTACCGATCCTGCTGCCGCA
* * *
5943074 ACCTTTGGTCCGGTCTAAA
900 ACCCTTGGTCTGGTCTAAT
* *
5943093 ATTAGACTTGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAATGAGCGGGCGGGCGGGCGGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAA-GAGCGGGCGGGCGGGCGG-
*
5943158 AAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATAGATCGGGTGGTAGGTGGGT
64 -AGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATAGATAGGGTGGTAGGTGGGT
*
5943223 TTAGGCATATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGATTGTAAATTCATACAATGG
128 TTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGATTGTAAATTCATACAATGG
* *
5943288 TCCCTTAAGCCTTCACACGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
193 TCCCTTAAGCCTTCACGCGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTA
5943353 AAACTTTTGTGATTCGACATTTTTTAAAATTTTTCCAGAAGGAGTTTTGGCTGCAAACTTGGTAG
258 AAACTTTTGTGATTCGACATTTTTTAAAATTTTT-CAGAAGGAGTTTTGGCTGCAAACTTGGTAG
*
5943418 ACGTGATCCTTGTATTTTTTTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
322 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
5943482 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACC
387 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
5943547 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGTCC
452 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG-CC
*
5943612 AATATATGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGGCCCCTCCGA
516 AATATATGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCTCCGA
* **
5943677 TCGTCGGAACCCCAAAGCCATCGGTCAGGTTCTCCGAGGATGCTTCGGCAATGGTGCCCCGGTGA
580 TCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGAGGATGCTTCGGCAATGGTGCCCCGACGA
* *
5943742 AGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACC-TC--C-G--G-T
645 AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCTTCGTCGGTCGAT
* *
5943800 C-----C--GG------TCC-AAT-CTTAGACTGGGAATGAAC-TCTGTATGCTTAGACTGGGGA
710 CTTAGACTGGGAATAACTCCGTATGCTTAGACTGGGAATGAACTTC-GTATGCTTAGACTGGGAA
* * * *
5943849 TTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGTGGGCACTCAGCCGACTAGAGGGGC
774 TAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTCAGCCGGCCAGAGGGGC
* * * * * **
5943914 AGAATGCGCAAGCAGAGGATCGACCGAGTCCCC-CTTTGCATGCTGCCGATCCTGCTGTGGCAAC
839 AGAATGCGCAAGCTGGGGATCGACCGGGTCCCCTCTATG--TGCTACCGATCCTGCTGCCGCAAC
**
5943978 CCTTGGTCTGGTCCGAT
902 CCTTGGTCTGGTCTAAT
* * * *
5943995 CTTAGACTGGGAGTAAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAA-GAGCGGGCGGGCGGGC-GG
* * * * * *
5944060 CAGGCACTACGCCGACCAGAGAGATGGGATGCGCAAGCTGTGGATCGATAGGGAGGTAGGTTGGT
64 -AGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATAGATAGGGTGGTAGGTGGGT
5944125 TTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGATTGTAAATTCATACAATGG
128 TTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGATTGTAAATTCATACAATGG
* *
5944190 TCGCTTAAGCCTTCACGCGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTA
193 TCCCTTAAGCCTTCACGCGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTA
*
5944255 AAACTTTTTGTGATTCGACATTTTTTAAAATTTTTTCAGAAGGAGTTTTGACTGCATAA-TTGGT
258 AAAC-TTTTGTGATTCGACATTTTTTAAAA-TTTTTCAGAAGGAGTTTTGGCTGCA-AACTTGGT
* * * *
5944319 AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTGGAACTGTACA
320 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
5944384 AGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATTGCTACTGGCAGCAAA
385 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * **
5944449 CTTGTAAAATCTCAAATGCTCTTTAAGGGCGTGTGAG-T-TCGAGGTTTGATGAATGATATGGGG
450 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGG
* *
5944512 CCAATATATGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCG
514 CCAATATATGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCCG
* * ** * * **
5944577 ATCATCGGAACCCCAATTCCGCCGGTCAGGTTCTCTG-GCGATGCTCCGGTGATGGTGCCCCGAC
579 ATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGAG-GATGCTTCGGCAATGGTGCCCCGAC
* ** *
5944641 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCATAACCCTTGGTCCGGT
643 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAA-CCTTCGT-CGGT
5944706 CCGATCTTAGACTGGGAATGAACTCCGTATGC
706 -CGATCTTAGACTGGGAAT-AACTCCGTATGC
5944738 CTAAGTCAGC
Statistics
Matches: 2240, Mismatches: 235, Indels: 150
0.85 0.09 0.06
Matches are distributed among these distances:
892 5 0.00
893 462 0.21
894 101 0.05
895 3 0.00
896 3 0.00
897 37 0.02
898 2 0.00
900 5 0.00
901 115 0.05
902 458 0.20
903 90 0.04
904 138 0.06
906 1 0.00
907 1 0.00
909 1 0.00
910 1 0.00
911 4 0.00
912 1 0.00
913 1 0.00
916 1 0.00
917 1 0.00
918 8 0.00
919 7 0.00
920 189 0.08
921 2 0.00
922 1 0.00
923 1 0.00
924 12 0.01
925 4 0.00
926 7 0.00
927 224 0.10
928 353 0.16
929 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (918 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAAGAGCGGGCGGGCGGGCGGAG
GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATAGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGATTGTAAATTCATACAATGGTCC
CTTAAGCCTTCACGCGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAA
CTTTTGTGATTCGACATTTTTTAAAATTTTTCAGAAGGAGTTTTGGCTGCAAACTTGGTAGACGT
GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATAT
ATGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCCGATCGTCG
GAACCCCAATGCCATCGGTCAGGTTCTCCGAGGATGCTTCGGCAATGGTGCCCCGACGAAGAAAA
ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCTTCGTCGGTCGATCTTAGA
CTGGGAATAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATAAACTC
CGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTCAGCCGGCCAGAGGGGCAGAATGC
GCAAGCTGGGGATCGACCGGGTCCCCTCTATGTGCTACCGATCCTGCTGCCGCAACCCTTGGTCT
GGTCTAAT
Found at i:5943846 original size:26 final size:26
Alignment explanation
Indices: 5943810--5943862 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5943800 CCGGTCCAAT
*
5943810 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
5943836 CTTAGACTGGGGATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5943862 C
1 C
5943863 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5951480 original size:855 final size:853
Alignment explanation
Indices: 5949296--5959992 Score: 5763
Period size: 872 Copynumber: 11.9 Consensus size: 853
5949286 GCGCTGCCAT
* * *
5949296 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAA
1 AACCCTTGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * *
5949361 CGAGC-A-GGTAGGCAGGCGGACGGGCACTACGCCGGCCAAAGAGACGGGATGCACAAGCCGTGG
66 CGAGCGACGG-A--CGGGTGGGCGGGCACTACGTCGGCC---GAGA--GGA--C-GAA---GTGG
*
5949424 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-T-CCATGCCAATGCCATTTTTA
117 A--GA-A--GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGA-GCCAATGCCATTTTTA
* *
5949487 TGGCTTGTAAATTCATACAATGGTCCCTTGAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
176 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCG
* *
5949552 TTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAG
241 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAG
* * * *
5949617 GAGTTTT-AGGCCCAAACTTATTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAACAAAATT
306 CAGTTTTGA-CCCCAAACTTAGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA-AAAATT
* * * *
5949681 TAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCCTTTCAGACA
369 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
5949746 CTTTAATGGCTAGTAGCAGGA-AACCTGTAAAATCTCAAATGCTCTTTAAGGGAATGTGAGTTCT
434 CTTTAATGGCTACTGGCA--ACAACCTGTAAAATCTCAAATGCTCTTTAAGGG-GTGTGAGTTCT
5949810 CG-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
496 -GAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *
5949874 GT-CTGCACACCCCCCGGCC-CCCCAGATCGTCGGAACCCCAATTCCGCCGGTCAAGTTCTCCGG
560 GTGC-GCACACCCCCCGGCCACCCC-GATCGTC-GAAACCCAATGCCGCCGGTCAAGTTCTCCGG
* * * *
5949937 CGATGCTCCGG-CATAGTGCCCCGACGAAGAAAAATACGGCACCAGCACAT-GCCTGAACCCAGT
622 TGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGGCC--AACCCAGC
* * * * *
5950000 ATGTGCTGTCGCATCCCTCGGT-CTAGTCGGATCTTAGACTGGGAATGAACTCTGTATGCCTAAG
685 ATGTGCTGTCGTAACCCTCGGTCCGACTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAG
* *
5950064 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCTGGGGA
750 TCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * *
5950129 TCGACCGGGTCCCCCTCTATG--TGCTGCTGATCCTACTGCCGT
814 TCGA-CGGGTCCCCCT-T-TGCATGCTTC-GATCCTGCTGCCGC
* * * * *
5950171 AACCCTTGG-TCTGATCTAATCTTTGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACGAA
1 AACCCTTGGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* ** * *
5950235 ACAAGCG--GGTGGGTGTGCGAGCGAGCACCACGTCGGCCAGAGAGACGGGATGCGCAAGTTGTG
65 ACGAGCGACGGACGG-GTG-G-GCGGGCACTACGTCGGCC---GAGA--GGA--CG-AA---GTG
* *
5950298 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTA
116 GA--GA-A--GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGAGCCAATGCCATTTTTA
*
5950363 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
176 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCG
* * * *
5950428 TTTTCTATTATTCACGATTTTTGAAAC-TTTTATGGTTTGGGATTTTTTAAAA-TTTTTCGGAAG
241 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAG
* * * *
5950491 GAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCA
306 CAGTTTTGACCCCAAACTTAGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCA
5950556 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
371 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
5950621 TTAATGGCTACTGGCAACAACCTATAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTGAAG
436 TTAATGGCTACTGGCAACAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGTGTGAGTTCTGAAG
* ** * * *
5950686 GTATGATGAATGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATTGCATATCATGTGCG
500 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * *
5950751 CACACCGCCCCGACCACCCCGATCGTCGAAACGCCAATGCCGCCAGTCAAGTTCTCCGATGATGC
565 CACACC-CCCCGGCCACCCCGATCGTCGAAAC-CCAATGCCGCCGGTCAAGTTCTCCGGTGATGC
* * * *
5950816 TCTGGGTGATGGTGCCCC-AGTGAAGAAAAATATGGTACCAGCACATGGCCAACCCCAGCAATGT
628 TC-CGGTGATGGTGCCCCGA-CGAAGAAAAATACGGCACCAGCACATGGCCAA-CCCAGC-ATGT
5950880 GCTTGTCGTAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCA
689 GC-TGTCGTAACCCTCGGTCCGACTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCA
* * *
5950944 ACCCACGAAACGAGCGTGCGGACGCTCAGTCGGCCAGAGGGGTGGGATGCGCAAGCCAGGGATCG
753 ACCCACGAAACGAGCGTGCGGGCGCTCAG-CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * *
5951009 ATCGGGTCCCCCTTTGCATGCTATCAATCTTGCTACCGG
817 A-CGGGTCCCCCTTTGCATGCT-TCGATCCTGCTGCCGC
* * * *
5951048 AATCCTCTTGGTTCGGTCCGATCCTAGACTGGGAATGAACTCCGTATGCCTAACCCAACCGATGA
1 AA-CC-CTTGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
*
5951113 AACGAGCGACGGACGGGTGGGCGGGCACTACGTCGGCC-AGA-GA-G-A-TGG-G-A-TGGTAGC
64 AACGAGCGACGGACGGGTGGGCGGGCACTACGTCGGCCGAGAGGACGAAGTGGAGAAGTGGTAGG
* *
5951170 TAGGTTTAGGCACATCTTCATATTTCTACGAGCCAATGCCATTTTTATGGCTCGTAAATTCATAC
129 TGGGTTTAGGCACATCTTCATATTTCTACGAGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
5951235 AATGGTCCCTTAAACCTTCACATGAAGTTTCATGACAAGACGACTCATTTTTTATTTTTCACGAT
194 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGTTTTCTATTTTTCACGAT
* *
5951300 TTTTGAAACTTTTTACGGTTCGGGA-TTTTTAAAATTTTTTCGAAAGCAATTTTGAACCCAAACT
259 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGCAGTTTTGACCCCAAACT
* * * *
5951364 TAGTAGATGTAATCCTTGTATTTTTGTTGGCATGCATAAAAAATTCTGCTAAAAACTCGAAGTGT
324 TAGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGT
*
5951429 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
389 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAAC
*
5951494 AAACCTGTAAAATCTCAAATGC-CTTTTAAGGGG-GTGCAAGTTCTCAAGGTTTGATGAGGGATA
454 -AACCTGTAAAATCTCAAATGCTC-TTTAAGGGGTGTG--AGTTCTGAAGGTTTGATGAGGGATA
* *
5951557 GGGTGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCACCCCCCGG
515 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CA-CACCCCCCGG
* * * *
5951622 CAACCCCGATCGTC-AGAACCCTAATGCCGCCGGTCAGGTTCTTCGGTGATGCTCCGATGATGGT
577 CCACCCCGATCGTCGA-AACCC-AATGCCGCCGGTCAAGTTCTCCGGTGATGCTCCGGTGATGGT
* * * *
5951686 GCCCCGACGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTC
640 GCCCCGACGAAGAAAAATACGGCACCAGCACATGGCC-AACCCAGCATGTGCTGTCGTAA-CC-C
*
5951751 AATCTGTTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTTGTATG
702 --TC-G----G-TC-----C-------G-ACTCCG-AT-CTTAGACTGGGAATGAACTCTGTATG
* * *
5951816 CCTAAGTCAACCCACG-AACGAGCGTGCGGGCGCTCAGCTAGCCAGAGGGGCAGGATGCGCAAGT
744 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC-GGCCAGAGGGGCGGGATGCGCAAGC
* *
5951880 CGGGGATCGACTGGGTCCCCATCTGCATGCTGTCGATCCTGCTGCCGC
808 CGGGGATCGAC-GGGTCCCCCTTTGCATGCT-TCGATCCTGCTGCCGC
* * * **
5951928 AACCCTCGGTCCGGTCTGATCTTAGACTGTGAATGAACTATGTATGCCTAAGCCAACCGACGAAA
1 AACCCTTGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * *
5951993 CGA---ACCGACGGGCGGGCGGGCACTACGCCGGCCAGGGAGACGGGATGCGCAAGCCGTGGATC
66 CGAGCGACGGACGGGTGGGCGGGCACTACGTCGGCC---GAGA--GGA--CG-AA---GTGGA--
* * * *
5952055 GATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCGTA-CCAATACAATTTTTATGG
118 GA-A--GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACG-AGCCAATGCCATTTTTATGG
*
5952119 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGATGACTCGTTT
179 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGTTT
* * * *
5952184 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAACTTTTTCGGAATG-A
244 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-GAAAGCA
* * *
5952248 GCTTT-AGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAACAATCA
308 GTTTTGA-CCCCAAACTTAGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-ATTCA
* * * ** * * **
5952311 GGTAAAAACTCGAAGTGTACAAGA-TTTG-GCCCTGAACTTGGTAGACGTGATCCTTGTATTTTT
371 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACC---ATTTGAAAAAAGTG-TCC--CCA----T
**** * *** * ***
5952374 ATTAGCATGCACAAAAAAAT-TC-AGCTAAAAAATCGAA-GTGTACAAAAT-T-TTGTGAC-CAT
426 -TT--CA-G-ACACTTTAATGGCTA-CT-GGCAA-C-AACCTGT--AAAATCTCAAATG-CTC-T
*** * * * * * ** * * *
5952433 TTGAAAAAAGTGTCCCCATTTATGACA-CTTTAATG-GCTATTGGCAGCAAGCCTGTAAAATCTC
478 TT--AAGGGGTGT---GAGTTCTGA-AGGTTTGATGAGGGATAGG--G--GGCC-----AATAT-
** *** ** * * * ** * * *
5952496 AAATGCTCTTTAAGGGGGTTTGAGTTCTCGAGGTTTG-ATGAGGGATAGGGGGCCAATATAAGGG
527 AAGGGC-C---AA----GTACCAGCAC-CCA---TCGCA-CA-TCAT-GTGCG-C---A-CA---
* * * * *
5952560 CCAAGTACCAACACCCATCGCACATCATGTGCGCACAGCCCCCCCGGCCCCCCCGAACATTGGAA
569 CCC-----------------C-C--C----G-GC-CA-------------CCCCGATCGTCGAAA
* * * * ** * * *
5952625 CACCAATGCCGCCGATTAGGTCCTCCGACGATGCTCCGGTAATGGTGCCTCGATGAAGAAAAATA
595 C-CCAATGCCGCCGGTCAAGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATA
* **
5952690 CGGCACCAGCACAT-GCCTGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGTCCCATCTTAG
659 CGGCACCAGCACATGGCC--AACCCAGCATGTGCTGTCGTAACCCTCGGTCC-G----A-C-T--
* * *
5952754 ACTGGGAATGAAATCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCATGAA
713 -C------------C-G-AT-CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAA
* * *
5952819 ATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATACGCAAGCCGGGGATCGATTGGGTCC
762 ACGAGCGTGCGGGCGCTCAG-CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CGGGTCC
* * * * *
5952884 TCCTCTACATGCTGTCGATCCTACTGCTGC
825 CCCTTTGCATGCT-TCGATCCTGCTGCCGC
** * * * * *
5952914 AACCCTCAGTTTGGTCTTATCTTCGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACAAAA
1 AACCCTTGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * *
5952979 CGAGC-AGCGGGCGGGTGGGCGGGCACTATG-CTAGCCAGAGAGACGGGATGCGCAAGCCGTGGA
66 CGAGCGA-CGGACGGGTGGGCGGGCACTACGTC-GGCC---GAGA--GGA--CG-AA---GTGGA
* ** * *
5953042 TCGATAGGGTGGTAGGTGGGGTTAGGCACATCTTCATATTTCTGTGTGCTAATGCCATTTTTATG
118 --GA-A--GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGAGCCAATGCCATTTTTATG
*
5953107 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
178 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGTT
* * * * **
5953172 TTCTATTTTTGACGATTTTTGAAACTTTTTACGGTTCTGGATTTTTAAAAATTTTTTCGGAAGGG
243 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGCA
* * * *
5953237 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGAATGCACAAAAAAATCAGC
308 GTTTTGACCCCAAACTTAGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGC
* * *
5953302 TAAAAATTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTT
373 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * *
5953367 AATGACTACTGGCAGCAAACTTGTAAAATCTCACATGCTCTTTAAGGGGGTGTGAGTTCTTG-AG
438 AATGGCTACTGGCAAC-AACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTC-TGAAG
* * * *
5953431 GTTTGATGAGGGATAGGGGGCCAATACAAGGGCCAAGTACCAGCACTCATTGCACATCATGTGTG
500 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * * * * **
5953496 CACACCCACTGGCCCCCCCGATCGTCGGAACCCCAATGCCACCAGTCAGGTTCTCCGACGATGCT
565 CACACCCCCCGGCCACCCCGATCGTC-GAAACCCAATGCCGCCGGTCAAGTTCTCCGGTGATGCT
** * * * *
5953561 CCGACGATCGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA
629 CCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGGCC-AACCCAGCATGTGCTG
* * * * *
5953626 CCGTAACCCTCGGTCTG-GTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAAGTCAACCCA
693 TCGTAACCCTCGGTCCGACTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCA
* * * * * *
5953690 CGAAACGAGCGTGCGGGTGCTCAGCTAGCCAGAGGGGCAGGATGCACAAGTCGAGGATCGACCGG
758 CGAAACGAGCGTGCGGGCGCTCAGC-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CGG
** *
5953755 GTCCCCCTCGGCATGCTACCGATCCTGCTGCCGC
821 GTCCCCCTTTGCATGCT-TCGATCCTGCTGCCGC
* * ** *
5953789 AACCCTTGG-TCTAGTCTGATCTTAGACTGTGAATGAACTATGTATGCCTAAG-CAATCCGTCGA
1 AACCCTTGGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CCGACGA
* * * *
5953852 AACGAGC--C-AACGGGCGGGCGGGCACTACGCCGACCAGGGAGACGGGATGCGCAAGCCGTGGA
64 AACGAGCGACGGACGGGTGGGCGGGCACTACGTCGGCC---GAGA--GGA--CG-AA---GTGGA
* *
5953914 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTA-CCAATACCATTTTTAT
118 --GA-A--GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACG-AGCCAATGCCATTTTTAT
*
5953978 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGATGACTCGT
177 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGT
* *
5954043 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAACTTTTTC-AGAAG
242 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAG
* * * * *
5954107 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAATC
306 CAGTTTTGACCCCAAACTTAGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAATTC
* ** * *
5954172 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAATCAAGTGTCCCCATTTTAAACAC
370 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
5954237 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGGGTGTGAGTTCTCG
435 TTTAATGGCTACTGGCAAC-AACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCT-G
*
5954302 -AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACATCATGT
497 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * ** * **
5954366 GCGCACCCCCCCCGGCC-CCCCGATCATCGGAACCCCAATGCCGTCGGTCTGGTTCTCTGACGAT
562 GCGCACACCCCCCGGCCACCCCGATCGTC-GAAACCCAATGCCGCCGGTCAAGTTCTCCGGTGAT
* * *** * * *
5954430 GCTCCAGCGATGGTGCCCCGGTAAAGAAAAATGCGGCACCAGCACATGCCCATGCCCAGCATGTG
626 GCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGGCCA-ACCCAGCATGTG
* *** *
5954495 CTACCGCAACATTCGGTCCGATCCGATCTTAGACTGGAATGAACTCTGTATGCTTAGACTGGGAA
690 CT---G------TC-GT---AACC---C-T---C-GGTCCG-ACTCCG-AT-CTTAGACTGGGAA
* * * * *
5954560 TGAACTCCGTATACCTAAGTCAACCCACGACACGACCGTGCGGGCGCTCAGTCGGCCAGAGGGGT
731 TGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CGGCCAGAGGGGC
* * ** * * * * *
5954625 GGGATGCGCAAGCCAGGGATCGGCTGGGT--CAATCTGCATGCTACCAATCCTACTGCCGT
795 GGGATGCGCAAGCCGGGGATCGAC-GGGTCCCCCTTTGCATGCT-TCGATCCTGCTGCCGC
** * * * * *
5954684 AACCCTCAG-TCTGATCCGATCTTAGACTGGGAATGAGCTCCGTATGCCTAAGTCAACCCACGAA
1 AACCCTTGGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* ** * ** * * * **
5954748 ACGAGCGTACAGG-C-GCTTAGC-CG-ACTA-GAGGGGC-AGGATGCAC-AAGCCGGAGATCAAC
65 ACGAGCG-AC-GGACGGGTGGGCGGGCACTACGTCGGCCGA-GA-GGACGAAG-TGGAGA--AGT
* *** * * * *** * * *
5954806 CGT--GTCCCCCTCTATGTGCTACCGATCCTGC-CACCGCAACCGTCAGTC--TGGTCCGAACTT
123 GGTAGGT--GGGTTTA-G-GC-A-C-AT-CTTCATATTTCTA-CG--AGCCAAT-G-CC--ATTT
** ** * * * * ** * *
5954866 AGACTGGGAATG-AACTCCGTATGCCTAA--GCCACCTGATGAAACGAGTGGGTGGGCGGGCGGG
173 TTA-T-GGCTTGTAAATTC--AT-AC-AATGGTC-CCT--T--AA-GCCT---T---C--ACGTG
* * * * ** *** * *** ** *** ** *
5954928 CA-CTACGTCGACCAGAGA-GACGGGATGCGCAAGCCGTGGATCGATAGGGTG--A-TTGGT-GG
218 AAGTTTCAT-GA-CA-AGACGACTCG-TTTTCTA-TTTTTCA-CGAT-TTTTGAAACTTTTTACG
* * ** * * * * * * *** * *
5954987 GTTAAGGCACATCTTCATATTTCTGTGTGCCAATGCCA-TTTTTATTGCTTGTAAATTCATACAA
276 GTT-CGGGATTTTTTAAAATTT-T-T-T-CGAAAG-CAGTTTTGA---C-CCCAAA--C-T-TAG
* * * * * ** ** * *** *
5955051 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG-ACAACTCGTTTTTTATTTTTCATGATA
327 TAG--ACGTGATCCTT---GT-ATTTTTGTTGGCATGCACAA----------AAAATTCA-GCTA
* *** * * * ** **** * *
5955115 TTCGAAACTTTTTA-TGGTTCAGGATTTT-TTAAAATTTTTTCGGAAGGATTTTTGGCCACAAAC
375 ---AAAAC-TCGAAGT-GTACAAGATTTTGTGACCA---TTT--GAA--AAAAGTGTCC-C-CA-
* * ** * * * *
5955178 TTGGT-AGACATGATCCTTGTATTTTTGTTGGCATGCAT-AAAAAAATTCAGCTAAAAACTCAAA
425 TT--TCAGAC---A--CTT-TA------ATGGC-TAC-TGGCAACAA-CCTG-TAAAATCTCAAA
* * * * * ** * * *
5955241 GTGTACAAGATTTTGTGACCATTTCAAGGCAGCAAACCTATAAAATATC-AAATTCTCTTTAAGG
472 -TG--C---------T---C-TTT-AAGG--G-----GTGT-GAGT-TCTGAA-GGT-TTGATGA
* ** ** * ** ** *
5955305 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGCGGCCAA-TATAAGGGCCAAGTAC-CAGCAC
509 GGG-AT-AG-----G-GG---G-CCA-ATATAAG-GGCCAAGTACCAGCACCCA-T-CGCA-CA-
* * ** * ** * * * * *
5955368 CCAT-TGCACATCATGTGTGCACATGCCCCGGCCCCCCCGATCGCCGGAACCCCAATGTCGTCGG
556 TCATGTGCGCA-CA----CCCCCCGGCCAC------CCCGATCGTC-GAAACCCAATGCCGCCGG
* *
5955432 TCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATG
609 TCAAGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATG
* * * ** * * *
5955497 CCCGAGCCCAGCATGTACTACCGCAACCTTCGGTCC-AATCCGATCTTAGACTGGGAATGAACTC
674 GCC-AACCCAGCATGTGCTGTCGTAACCCTCGGTCCGACTCCGATCTTAGACTGGGAATGAACTC
* * * * ** * * * *
5955561 CGTATGCGTAAGTCAACTCACAAAACGAGCGTGCGAACGCTCAGCCAGCCAAAGGGGCAGGATGT
738 TGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CGGCCAGAGGGGCGGGATGC
* * * * *
5955626 GCAAGCCGGGGATCGGTCAGGTCCCCCTTTACGTG-TTGCCGATCCTGCTGTCGC
802 GCAAGCCGGGGATC-GACGGGTCCCCCTTTGCATGCTT--CGATCCTGCTGCCGC
* * ** * * *
5955680 AACCCTCGGTCCTATCCGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAAACGACGAAA
1 AACCCTTGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * *
5955745 CAAGCAGGCGGACGGGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATAAGCAAGCCGT
66 C--G-A-GC-GACGGACGGGTGGGCGGGCACTACGTCGGCC---GAGA--GG--ACG-AA---GT
* * * * * *
5955810 GAATCGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATCTCTATGTGCCAATGCTATTTTT
115 GGA--GA-A--GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGAGCCAATGCCATTTTT
* ** * *
5955875 ATGCCTTGTAAATTCATATTATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTC
175 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTC
* * * ** * *
5955940 GTTTTTTATTTTTCATGATATTTGATCCTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT-TAGA
240 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-A
* * *
5956004 AGGAGTTTTGGCCCCAAACTTGGTAG-CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
304 AGCAGTTTTGACCCCAAACTTAGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAT
* *
5956068 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCTATTTCAGAC
368 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
5956133 ACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCT
433 ACTTTAATGGCTACTGGCAAC-AACCTGTAAAATCTCAAATGCTCTTTAAG-GGGTGTGAGTTCT
5956198 CG-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
496 -GAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * **
5956262 GTGTGCACAGCCCCTGGCC-CCCTCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
560 GTGCGCACACCCCCCGGCCACCC-CGATCGTCGAAA-CCCAATGCCGCCGGTCAAGTTCTCCGGT
** * * * * * *
5956326 GATGCTCCGACGATGGTGCCCCAATGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCAT
623 GATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGGCC-AACCCAGCAT
** * * * *
5956391 GTGCTACCGCAACCTTCGGT-CTAGTCCGATCTTAGACTGGGAATGAACTCTGTAT-CCTCAGAC
687 GTGCTGTCGTAACCCTCGGTCCGACTCCGATCTTAGACTGGGAATGAACTCTGTATGCCT-A-A-
* * **
5956454 TGGGAATAAACTCCGTATGCTGAGACTGGGAATGAACTCTGCATGCCTAAGTCAACCCATAAAAC
749 ---G--TCAAC-CC--A--C-GAAAC---G-A-G----C-G--TG-C---G-----------GGC
* * * * * *
5956519 AAGCGTAAGGGCGCTCAGCCGACCAGAGGGGCAGAATGCACAAGCTGGGGATCGATCGAGTCCCC
776 --GC----------TCAG-CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CGGGTCCCC
* * * * * *
5956584 CTCTACGTGCTACCAATCTTGCTGCCGC
827 CTTTGCATGCT-TCGATCCTGCTGCCGC
* * * *
5956612 AACCATCGG-TCTGGTCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGATGAA
1 AACCCTTGGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
5956676 ACGA--G-CGGACGGGCGGGCGGGCACTACGTCGACCAGAGAGATGGGATGCGCAAGTCGTGGAT
65 ACGAGCGACGGACGGGTGGGCGGGCACTACGTCGGCC---GAGA--GGA--CG-AA---GTGGA-
* * * *
5956738 CGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATGTTTCTACGTGCCAATGCCATTTTTCTGG
118 -GA-A--GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGAGCCAATGCCATTTTTATGG
* * * *
5956803 ATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGCGAAGTTTCATGGCAAGATGACTCGTTT
179 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGTTT
** * * * * *
5956868 TCTATTTTTCACGATTTTCAAAACTTTTGT--GATTCGGCATTTTTTGAAATTTTTT-TAGAAGG
244 TCTATTTTTCACGATTTTTGAAACTTTT-TACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGC
* ** *
5956930 AGTTTTGGCTGCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
307 AGTTTTGACCCCAAACTTAGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCA
*
5956995 GCTAAAAACTCGAAGTGTACAAGAATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
371 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
5957060 TTAATGGCTACTGGCAGCATACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG-
436 TTAATGGCTACTGGCAACA-ACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCT-GA
* * *
5957124 AGGTTTGATGAGGGATACGGGCCCAATATAGGGGCCAAGTACCAGCACCCATCGCACATCATGTG
498 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* ** * **
5957189 CGCACACCCCCCGGCC-CCTCCGATCGTCGGAACCCCAATGCCGTTGGTCAGGTTCTCCGACGAT
563 CGCACACCCCCCGGCCACC-CCGATCGTC-GAAACCCAATGCCGCCGGTCAAGTTCTCCGGTGAT
* ** ** * * * * * *
5957253 GCTTCGGCAATGGTGCCCCGGTGAAGAAAAATGCGACACTAGCACATGCCCGAGCCCAACATGTG
626 GCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGGCC-AACCCAGCATGTG
* ** *
5957318 CTGCCACAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
690 CTGTCGTAACCCTCGGTCCGACTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
* * *
5957382 CCGCGAAACGAGCATGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAT
755 CCACGAAACGAGCGTGCGGGCGCTC-AGCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-
* *
5957447 CGGGTCCCCCTCTACATGCTGTCGATCCTGCTGCCGC
818 CGGGTCCCCCTTTGCATGCT-TCGATCCTGCTGCCGC
** * * ** *
5957484 AACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGAC-AAA
1 AACCCTTGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * *
5957548 --A-TGA---AC----GGGCGGGCAGTACGTCGACCAGAGAGACGGGATGCGCAAGTCGTGGATC
66 CGAGCGACGGACGGGTGGGCGGGCACTACGTCGGCC---GAGA--GGA--CG-AA---GTGGA--
* * * *
5957603 GATAGGGTGGTAGGTTGGTTTAGACACATCTTCATATTTCTGC-ATGCCAATGCCAGTTTTATGG
118 GA-A--GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGA-GCCAATGCCATTTTTATGG
* * *
5957667 CTTGTAAATTCATACAATGGTTCCTTAAGCCTTCACGTGTAGTTTCATGGCAAGACGACTCGTTT
179 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGTTT
* * *
5957732 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGAATTTTTTAAAATTTTTTCG-AAGAAA
244 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAG-CA
* * * * *
5957796 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCATAAAAAAATCAGC
308 GTTTTGACCCCAAACTTAGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGC
* ** * *
5957861 TAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCTGTTTTAGACATTTT
373 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
5957926 AATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG-AG
438 AATGGCTACTGGCAAC-AACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCT-GAAG
* *
5957990 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCACACATCATGTGCG
500 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* ** * * * * * **
5958055 CACATCCCCCGGCCACCTTGATCATC-AGAACCCTAATGCCGTCGATCAGGTTCTCCAGCAATGC
565 CACACCCCCCGGCCACCCCGATCGTCGA-AACCC-AATGCCGCCGGTCAAGTTCTCCGGTGATGC
* * * * *
5958119 TCCGATGATGGTGCCCCGATGAAGAGAAATGCAGG-ACCAGCACATGCCCAAGCCCAGCATGTGC
628 TCCGGTGATGGTGCCCCGACGAAGAAAAATAC-GGCACCAGCACATGGCCAA-CCCAGCATGTGC
** *
5958183 TACCGCAACCCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAA
691 TGTCGTAA-CC-C--TC-G----G-TC-----C-------G-ACTCCG-AT-CTTAGACTGGGAA
* * * * * ***
5958248 TGAAAT-TCGTATTCCTAAGTCAACCCACGAAAAGAGCATACGGGCGCTCAGTCGGCCAGAGCCA
731 TGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CGGCCAGAGGGG
** * * * * * * * * * *
5958312 CGGGATGCATAGGCCGGGGATCGGCGGGGTCCTCCTCTACGTGCTGCCGATCCTACTACCGT
794 CGGGATGCGCAAGCCGGGGATCGAC-GGGTCCCCCTTTGCATGCT-TCGATCCTGCTGCCGC
* * *
5958374 AA-CCTTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTAAGCCTAAGCCGACCGACGAA
1 AACCCTT-GGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
5958438 ATGAGCG--GG-C----GGGCGGGCACTACGCCGGCCAGAAAGACAGGATGCGCAAGCCGTGGAT
65 ACGAGCGACGGACGGGTGGGCGGGCACTACGTCGGCC-G--AG--AGGA--CG-AA---GTGGA-
* * **
5958496 TGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATTTCTTC-ATGCCAATTACATTTTTATG
118 -GA-A--GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGA-GCCAATGCCATTTTTATG
* * *
5958560 GCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTT
178 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGTT
** * * *
5958625 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGTGATTTTTTAAAATTTTTAT-GGAAGG
243 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT-TCGAAAGC
* * *
5958689 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAGTTCA
307 AGTTTTGACCCCAAACTTAGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-TTCA
*
5958754 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCATACACT
371 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * *
5958819 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAACGAGGTGCGAGTTCTCAA
436 TTAATGGCTACTGGCAAC-AACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTGAA
* * *
5958884 GGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAAGTACAAGCACCCATCACACATCATGTGC
499 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * * *
5958949 GCACACCCCCCAAGCCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGCGATG
564 GCACACCCCCC-GGCCACCCCGATCGTC-GAAACCCAATGCCGCCGGTCAAGTTCTCCGGTGATG
** * *
5959014 CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT-GCTCGAGCCCAGCATGTG
627 CTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGGC-C-AACCCAGCATGTG
* * * * * *
5959078 TTGCCGCAACCCTCAGTCCG-GTCC-ACTCTTAGACTGGGAATGAACT-TCGTATACCTAAGTCA
690 CTGTCGTAACCCTCGGTCCGACTCCGA-TCTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCA
** * * * * *
5959140 ACCCGTGAAACGAGCATGTGGGCGCTCAGTCGACCAGAGGGGCGGGATGCACAAGTCGGGGATCG
753 ACCCACGAAACGAGCGTGCGGGCGCTCAG-CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-
* * * * * * * *
5959205 GTCGGGTCCCTCTCTACGTGCTGCTGATCCTGCTACCGT
816 GACGGGTCCCCCTTTGCATGCTTC-GATCCTGCTGCCGC
** * * ** * *
5959244 ATA-CCTCAGTCCGATCCAATCTTAGA-TAGGGAATGAACTCCGTATGTCTAAGCCAACCGATGA
1 A-ACCCTTGGTTCGGTCTGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * *
5959307 AACGAGCG--GG-C----AGGCGGGCACTATGCCGTCCAGAGAGACGCGATGCGCAAGCCGTGGA
64 AACGAGCGACGGACGGGTGGGCGGGCACTACGTCGGCC---GAGA-G-GA--CG-AA---GTGGA
* * * *
5959365 TCGATTGGGTGGTAGGTGGGTTTCGGCACATCTTCATATTTCTGC-ATGCCAATGCCATTTTTTT
118 --GA---AGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGA-GCCAATGCCATTTTTAT
* * *
5959429 GGCTTGTAAATTTATACAATGGTCCCTTAAGCC-TCACGTGAAGTTTCATGGCAAGACGACTCAT
177 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGT
** * * *
5959493 TTTCTATTTTTCACGATTTTCAAAATTTTTTACGGTTCGAGATTTTCTAAAATTTTTTC-AGAAG
242 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAG
* * * * * * * * *
5959557 GAGTTTCGGCCTCAAACTTGGTAGATGTTATCGTTGTATTTTTGTTGGCATGCACACAAACATTC
306 CAGTTTTGACCCCAAACTTAGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA-AAAAATTC
5959622 AGCTAAAAACTCGAAGTGT-C------------CC----------A--------ATTTCAGACAC
370 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
** *
5959656 TTTAATGGCTACTGGCGGCAAGCCTTTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
435 TTTAATGGCTACTGGCAACAA-CCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCT-G
* *
5959721 -AGGTTAGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCCAT-GACACATCATG
497 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG-CACATCATG
* * * * * **
5959784 TGTGCACACCCCCCGACC-CCCACGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACG
561 TGCGCACACCCCCCGGCCACCC-CGATCGTC-GAAACCCAATGCCGCCGGTCAAGTTCTCCGGTG
* * ** * *
5959848 ATGCTCCGATGATGGTGCCCC-AGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
624 ATGCTCCGGTGATGGTGCCCCGA-CGAAGAAAAATACGGCACCAGCACATGGCC-AACCCAGCAT
* * ** * ** *
5959912 GTGCT-ACCTCAACCCTCGGTTTGAGCT--GATCTTAAACTGGGAATGAACTCCATATGCGTAAG
687 GTGCTGTCGT-AACCCTCGGTCCGA-CTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAG
* *
5959974 CCAACCGACGAAACGAGCG
750 TCAACCCACGAAACGAGCG
5959993 ACCGGACGGG
Statistics
Matches: 7870, Mismatches: 1269, Indels: 1404
0.75 0.12 0.13
Matches are distributed among these distances:
836 5 0.00
837 154 0.02
838 137 0.02
839 1 0.00
846 1 0.00
854 147 0.02
855 173 0.02
856 102 0.01
857 49 0.01
858 53 0.01
859 7 0.00
860 1 0.00
862 4 0.00
863 6 0.00
864 483 0.06
865 80 0.01
866 2 0.00
868 8 0.00
869 163 0.02
870 299 0.04
871 15 0.00
872 602 0.08
873 336 0.04
874 81 0.01
875 396 0.05
876 119 0.02
877 142 0.02
878 77 0.01
879 75 0.01
880 233 0.03
881 48 0.01
882 11 0.00
883 3 0.00
884 5 0.00
885 10 0.00
886 9 0.00
887 13 0.00
888 12 0.00
889 10 0.00
890 173 0.02
891 16 0.00
892 21 0.00
893 25 0.00
894 272 0.03
895 294 0.04
896 111 0.01
897 98 0.01
898 14 0.00
899 160 0.02
900 90 0.01
901 121 0.02
902 10 0.00
903 1 0.00
904 4 0.00
905 3 0.00
906 9 0.00
907 5 0.00
908 8 0.00
909 11 0.00
910 10 0.00
911 25 0.00
912 9 0.00
913 17 0.00
914 14 0.00
915 17 0.00
916 12 0.00
917 12 0.00
918 12 0.00
919 6 0.00
920 4 0.00
921 4 0.00
922 5 0.00
923 54 0.01
924 565 0.07
925 19 0.00
926 4 0.00
927 7 0.00
928 3 0.00
929 12 0.00
930 1 0.00
931 6 0.00
932 126 0.02
933 5 0.00
934 6 0.00
935 5 0.00
936 2 0.00
937 4 0.00
938 4 0.00
939 3 0.00
940 7 0.00
941 14 0.00
942 12 0.00
943 4 0.00
944 4 0.00
945 1 0.00
946 9 0.00
947 3 0.00
948 8 0.00
949 4 0.00
950 10 0.00
951 3 0.00
952 6 0.00
953 2 0.00
954 8 0.00
955 1 0.00
956 12 0.00
957 11 0.00
958 4 0.00
960 3 0.00
961 6 0.00
962 4 0.00
963 4 0.00
964 8 0.00
965 5 0.00
966 13 0.00
967 3 0.00
968 4 0.00
969 12 0.00
970 8 0.00
971 13 0.00
972 9 0.00
973 9 0.00
974 9 0.00
975 10 0.00
976 16 0.00
977 5 0.00
978 5 0.00
980 6 0.00
981 5 0.00
982 4 0.00
983 5 0.00
984 12 0.00
985 144 0.02
986 146 0.02
987 7 0.00
988 32 0.00
989 306 0.04
990 16 0.00
991 9 0.00
992 8 0.00
993 1 0.00
994 89 0.01
995 6 0.00
996 77 0.01
997 1 0.00
998 5 0.00
999 7 0.00
1000 7 0.00
1001 5 0.00
1002 3 0.00
1003 8 0.00
1004 8 0.00
1005 14 0.00
1006 17 0.00
1007 14 0.00
1008 6 0.00
1009 4 0.00
1010 3 0.00
1011 5 0.00
1012 12 0.00
1013 2 0.00
1014 3 0.00
1015 4 0.00
1016 3 0.00
1017 5 0.00
1019 100 0.01
1020 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (853 bp):
AACCCTTGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CGAGCGACGGACGGGTGGGCGGGCACTACGTCGGCCGAGAGGACGAAGTGGAGAAGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTACGAGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGTTTTCTATTTTTCACGATTT
TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGCAGTTTTGACCCCAAACTTA
GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTGAAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCACCCCGA
TCGTCGAAACCCAATGCCGCCGGTCAAGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGACGAA
GAAAAATACGGCACCAGCACATGGCCAACCCAGCATGTGCTGTCGTAACCCTCGGTCCGACTCCG
ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
GCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACGGGTCCCCCTTTGCATGCTTCGATCCT
GCTGCCGC
Found at i:5952357 original size:85 final size:86
Alignment explanation
Indices: 5952260--5952423 Score: 260
Period size: 85 Copynumber: 1.9 Consensus size: 86
5952250 TTTAGCCCCA
* * * *
5952260 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAACAA-TCAGGTAAAAACTCG
1 AACTTGGTAGACGTGATCCTTGTATTTTTATTAGCATGCACAAAAA-AATTCAGCTAAAAAATCG
*
5952323 AAGTGTACAAGATTTGGCCCTG
65 AAGTGTACAAAATTTGGCCCTG
5952345 AACTTGGTAGACGTGATCCTTGTATTTTTATTAGCATGCACAAAAAAATTCAGCTAAAAAATCGA
1 AACTTGGTAGACGTGATCCTTGTATTTTTATTAGCATGCACAAAAAAATTCAGCTAAAAAATCGA
5952410 AGTGTACAAAATTT
66 AGTGTACAAAATTT
5952424 TGTGACCATT
Statistics
Matches: 72, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
85 40 0.56
86 32 0.44
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.30
Consensus pattern (86 bp):
AACTTGGTAGACGTGATCCTTGTATTTTTATTAGCATGCACAAAAAAATTCAGCTAAAAAATCGA
AGTGTACAAAATTTGGCCCTG
Found at i:5952785 original size:26 final size:26
Alignment explanation
Indices: 5952749--5952801 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5952739 CCGGTCCCAT
*
5952749 CTTAGACTGGGAATGAAATCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
5952775 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
5952801 C
1 C
5952802 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:5954556 original size:25 final size:26
Alignment explanation
Indices: 5954522--5954571 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5954512 CCGATCCGAT
*
5954522 CTTAGACT-GGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5954547 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
5954572 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5954885 original size:159 final size:157
Alignment explanation
Indices: 5954547--5954894 Score: 394
Period size: 157 Copynumber: 2.2 Consensus size: 157
5954537 ACTCTGTATG
* * * * *
5954547 CTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGACACGACCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTACAGGCGCTCAGC
* ** * ** * *
5954612 CGGCCAGAGGGGTGGGATGCGCAAGCCAGGGATCGGCTGGGTCAATCTGCATGCTACCAATCCTA
66 CGACCAGAGGGGCAGGATGCACAAGCCAGGGATCAACCGGGTCAACCTGCATGCTACCAATCCTA
** * *
5954677 CTGCCGTAACCCTCAGTCTGATCCGAT
131 CCACCGCAACCCTCAGTCTGATCCGAA
* * *
5954704 CTTAGACTGGGAATGAGCTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTACAGGCGCTCAGC
* * ** *
5954769 CGACTAGAGGGGCAGGATGCACAAGCC-GGAGATCAACCGTGTCCCCCT-CTATGTGCTACCGAT
66 CGACCAGAGGGGCAGGATGCACAAGCCAGG-GATCAACCGGGTCAACCTGC-A--TGCTACCAAT
* * *
5954832 CCTGCCACCGCAACCGTCAGTCTGGTCCGAA
127 CCTACCACCGCAACCCTCAGTCTGATCCGAA
5954863 CTTAGACTGGGAATGAACTCCGTATGCCTAAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAG
5954895 CCACCTGATG
Statistics
Matches: 158, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
156 3 0.02
157 91 0.58
159 64 0.41
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTACAGGCGCTCAGC
CGACCAGAGGGGCAGGATGCACAAGCCAGGGATCAACCGGGTCAACCTGCATGCTACCAATCCTA
CCACCGCAACCCTCAGTCTGATCCGAA
Found at i:5956499 original size:26 final size:26
Alignment explanation
Indices: 5956424--5956499 Score: 107
Period size: 26 Copynumber: 2.9 Consensus size: 26
5956414 GTCCGATCTT
*
5956424 AGACTGGGAATGAACTCTGTATCCTC
1 AGACTGGGAATGAACTCTGTATGCTC
* * *
5956450 AGACTGGGAATAAACTCCGTATGCTG
1 AGACTGGGAATGAACTCTGTATGCTC
*
5956476 AGACTGGGAATGAACTCTGCATGC
1 AGACTGGGAATGAACTCTGTATGC
5956500 CTAAGTCAAC
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCTGTATGCTC
Found at i:5957605 original size:159 final size:158
Alignment explanation
Indices: 5957316--5957610 Score: 364
Period size: 159 Copynumber: 1.9 Consensus size: 158
5957306 GCCCAACATG
* * *
5957316 TGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 TGCTGCCACAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
5957381 CCCGCGAAACGAGCATGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
66 CCCGCAAAACGAACAGGCGGGCGCT-AACCGACCAGAGAGACGGGATGCGCAAGCCGGGGATCGA
*
5957446 TCGGGTCCCCCTCTACATGCTGTCGATCC
130 TAGGGTCCCCCTCTACATGCTGTCGATCC
* *
5957475 TGCTGCCGCAACCCTCAGTCC-AGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
1 TGCTGCCACAACCCTCAGTCCGA-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
5957539 A-CCGACAAAATGAACGGGCGGGCAG-T-ACGTCGACCAGAGAGACGGGATGCGCAAGTCGTGGA
65 ACCCG-CAAAACGAACAGGCGGGC-GCTAAC--CGACCAGAGAGACGGGATGCGCAAGCCGGGGA
5957601 TCGATAGGGT
126 TCGATAGGGT
5957611 GGTAGGTTGG
Statistics
Matches: 115, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
157 2 0.02
158 4 0.03
159 108 0.94
160 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.17
Consensus pattern (158 bp):
TGCTGCCACAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCCGCAAAACGAACAGGCGGGCGCTAACCGACCAGAGAGACGGGATGCGCAAGCCGGGGATCGAT
AGGGTCCCCCTCTACATGCTGTCGATCC
Found at i:5958163 original size:864 final size:864
Alignment explanation
Indices: 5956476--5959991 Score: 4300
Period size: 864 Copynumber: 4.1 Consensus size: 864
5956466 CCGTATGCTG
* * *** * * *
5956476 AGACTGGGAATGAACTCTGCATGCCTAAGTCAACCCATAAAACAAGCGTAAGGGCGCTCAGCCGA
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCGCGAAACGAGCATACGGGCGCTCAGCCGA
* * * * * * *
5956541 CCAGAGGGGCAGAATGCACAAGCTGGGGATCGATCGAGTCCCCCTCTACGTGCTACCAATCTTGC
66 CCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * * * ** *
5956606 TGCCGCAACCATCGGTCTGGTCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCG
131 TACCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * *
5956671 ATGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGACCAGAGAGATGGGATGCGCAAGTCGTGG
196 A-CAAA--A--TGA--GGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGG
* * * * *
5956736 ATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATGTTTCTACGTGCCAATGCCATTTTTCT
254 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * *
5956801 GGATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGCGAAGTTTCATGGCAAGATGACTCGT
319 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
5956866 TTTCTATTTTTCACGATTTTCAAAACTTTTGT--GATTCGGCATTTTTTGAAATTTTTTTAGAAG
384 TTTCTATTTTTCACGATTTTCAAAACTTTT-TACGGTTCGGAATTTTTT-AAAATTTTTTCGAAG
**
5956929 GAGTTTTGGCTGCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
447 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TC
*
5956994 AGCTAAAAACTCGAAGTGTACAAGAATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
511 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
5957059 TTTAATGGCTACTGGCAGCATACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
576 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * *
5957124 AGGTTTGATGAGGGATACGGGCCCAATATAGGGGCCAAGTACCAGCACCCATCGCACATCATGTG
641 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTG
* *
5957189 CGCACACCCCCCGG-CCCCTCCGATCGTCGGAACCCCAATGCCGTTGGTCAGGTTCTCCGACGAT
706 CGCACACCCCCCGGCCCCCT-CGATCGTCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGAT
* * * * * * *
5957253 GCTTCGGCAATGGTGCCCCGGTGAAGAAAAATGCGACACTAGCACATGCCCGAGCCCAACATGTG
770 GCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* *
5957318 CTGCCACAACCCTCGGTCCGATCCGATCTT
835 CTACCGCAACCCTCGGTCCGATCCGATCTT
* * *
5957348 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCGCGAAACGAGCATGCGGGCGCTCAACCGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCGCGAAACGAGCATACGGGCGCTCAGCCGA
* * *
5957413 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACATGCTGTCGATCCTGC
66 CCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * *
5957478 TGCCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCG
131 TACCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * *
5957543 ACAAAATGA-ACGGGCGGGCAGTACGTCGACCAGAGAGACGGGATGCGCAAGTCGTGGATCGATA
196 ACAAAATGAGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * *
5957607 GGGTGGTAGGTTGGTTTAGACACATCTTCATATTTCTGCATGCCAATGCCAGTTTTATGGCTTGT
261 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
* *
5957672 AAATTCATACAATGGTTCCTTAAGCCTTCACGTGTAGTTTCATGGCAAGACGACTCGTTTTCTAT
326 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* ** *
5957737 TTTTCATGATTTTTGAAACTTTTTACGGTTCGGAATTTTTTAAAATTTTTTCGAAGAAAGTTTTG
391 TTTTCACGATTTTCAAAACTTTTTACGGTTCGGAATTTTTTAAAATTTTTTCGAAG-GAGTTTTG
* *
5957802 GCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCATAAAAAAATCAGCTAAAAA
455 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATCAGCTAAAAA
* ** * *
5957867 CTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCTGTTTTAGACATTTTAATGGC
520 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
*
5957932 TACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
585 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* *
5957997 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCACACATCATGTGCGCACATCC
650 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCC
* * * * * * *
5958062 CCCGGCCACCTTGATCATCAGAACCCTAATGCCGTCGATCAGGTTCTCC-AGCAATGCTCCGATG
715 CCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGATCAGGTTCTCCGA-CGATGCTCCGACG
* *
5958126 ATGGTGCCCCGATGAAGAGAAATGCAGG-ACCAGCACATGCCCAAGCCCAGCATGTGCTACCGCA
779 ATGGTGCCCCGATGAAGAAAAATGC-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCA
*
5958190 ACCCTCGGTCTGATCCGATCTT
843 ACCCTCGGTCCGATCCGATCTT
* *
5958212 AGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAAATTCGTATTCCTAAGTCAACCCACG
1 AGACTGGGAATGAA---C---T-C-----C---G--T---A-T-G----CCTAAGTCAACCCGCG
* * * *** * * *
5958277 AAAAGAGCATACGGGCGCTCAGTCGGCCAGAGCCACGGGATGCATAGGCCGGGGATCG-GCGGGG
40 AAACGAGCATACGGGCGCTCAGCCGACCAGAGGGGCGGGATGCACAAGCCGGGGATCGATC-GGG
* * * * * * *
5958341 TCCTCCTCTACGTGCTGCCGATCCTACTACCGTAACCTTCGGTTCGGTCCGATCTTAGACTGGGA
104 TCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGA
* * * *
5958406 ATGAACTCCGTAAGCCTAAGCCGACCGACGAAATGAGCGGGCGGGCGGGCACTACGCCGGCCAGA
169 ATGAACTCCGTATGCCTAAGCCAACCGACAAAATGA---GGCGGGCGGGCACTACGCCGACCAGA
* * * *
5958471 AAGACAGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATTT
231 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* ** *
5958536 CTTCATGCCAATTACATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGA
296 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
*
5958601 AGTTTCAAGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGTG-
361 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCG-GA
*
5958665 ATTTTTTAAAATTTTTATGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
425 ATTTTTTAAAATTTTT-TCGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* *
5958730 TTTTGGCATGCACAAAAAAGTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
489 TGTTGGCATGCACAAAAAA-ATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
*
5958795 AAAAGTGTCCCCATTTCATACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
553 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * * * *
5958860 CTTTAACGAGGTGCGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAAGTAC
618 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * *
5958925 AAGCACCCATCACACATCATGTGCGCACACCCCCCAAGCCCCCCCGATCGTCGGAACCCCAATGC
683 CAGCACCCATCACACATCATGTGCGCACACCCCCC-GGCCCCCTCGATCGTCGGAACCCCAATGC
* * *
5958990 CG-CTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
747 CGTC-GATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCA
* * * * *
5959054 GCACATGCTCGAGCCCAGCATGTGTTGCCGCAACCCTCAGTCCGGTCC-ACTCTT
811 GCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGATCCGA-TCTT
* * * ** *
5959108 AGACTGGGAATGAACTTCGTATACCTAAGTCAACCCGTGAAACGAGCATGTGGGCGCTCAGTCGA
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCGCGAAACGAGCATACGGGCGCTCAGCCGA
* * * *
5959173 CCAGAGGGGCGGGATGCACAAGTCGGGGATCGGTCGGGTCCCTCTCTACGTGCTGCTGATCCTGC
66 CCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* * *
5959238 TACCGTATA-CCTCAGTCCGATCCAATCTTAGA-TAGGGAATGAACTCCGTATGTCTAAGCCAAC
131 TACCGCA-ACCCTCAGTCCGGTCCAATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAAC
** * * * * *
5959301 CGATGAAACGAGCGGGCAGGCGGGCACTATGCCGTCCAGAGAGACGCGATGCGCAAGCCGTGGAT
194 CGACAAAATGA---GGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
5959366 CGATTGGGTGGTAGGTGGGTTTCGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTTTGG
256 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* *
5959431 CTTGTAAATTTATACAATGGTCCCTTAAGCC-TCACGTGAAGTTTCATGGCAAGACGACTCATTT
321 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* *
5959495 TCTATTTTTCACGATTTTCAAAATTTTTTACGGTTC-GAGATTTTCTAAAATTTTTTCAGAAGGA
386 TCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGA-ATTTTTTAAAATTTTTTC-GAAGGA
* * * * * * *
5959559 GTTTCGGCCTCAAACTTGGTAGATGTTATCGTTGTATTTTTGTTGGCATGCACACAAACATTCAG
449 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA-AAAAAATCAG
5959624 CTAAAAACTCGAAGTGT-C------------CC----------A--------ATTTCAGACACTT
513 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
5959658 TAATGGCTACTGGCGGCAAGCCTTTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
578 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * * *
5959723 GTTAGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCCATGACACATCATGTGTG
643 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG
* * *
5959788 CACACCCCCCGACCCCCACGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCT
708 CACACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCT
* *
5959853 CCGATGATGGTGCCCC-AGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
773 CCGACGATGGTGCCCCGA-TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* ** * *
5959917 ACCTCAACCCTCGGTTTGAGCTGATCTT
837 ACCGCAACCCTCGGTCCGATCCGATCTT
* * * *
5959945 AAACTGGGAATGAACTCCATATGCGTAAGCCAA-CCGACGAAACGAGC
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCG-CGAAACGAGC
5959992 GACCGGACGG
Statistics
Matches: 2307, Mismatches: 281, Indels: 147
0.84 0.10 0.05
Matches are distributed among these distances:
836 4 0.00
837 159 0.07
838 141 0.06
846 1 0.00
856 2 0.00
863 2 0.00
864 528 0.23
865 75 0.03
867 4 0.00
868 2 0.00
869 159 0.07
870 287 0.12
871 6 0.00
872 167 0.07
875 1 0.00
876 2 0.00
879 2 0.00
881 2 0.00
884 2 0.00
885 1 0.00
886 1 0.00
889 1 0.00
890 153 0.07
893 1 0.00
894 268 0.12
895 204 0.09
896 132 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (864 bp):
AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCGCGAAACGAGCATACGGGCGCTCAGCCGA
CCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
TACCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ACAAAATGAGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCACGATTTTCAAAACTTTTTACGGTTCGGAATTTTTTAAAATTTTTTCGAAGGAGTTTTGG
CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATCAGCTAAAAAC
TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCC
CCGGCCCCCTCGATCGTCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGACGAT
GGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACC
CTCGGTCCGATCCGATCTT
Found at i:5958258 original size:26 final size:26
Alignment explanation
Indices: 5958202--5958259 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
5958192 CCTCGGTCTG
5958202 ATCCG-AT-CTTAGACTAGGAATGAA
1 ATCCGTATGCTTAGACTAGGAATGAA
* *
5958226 CTCCGTATGCTTAGACTGGGAATGAA
1 ATCCGTATGCTTAGACTAGGAATGAA
*
5958252 ATTCGTAT
1 ATCCGTAT
5958260 TCCTAAGTCA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 4 0.14
25 2 0.07
26 22 0.79
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.29
Consensus pattern (26 bp):
ATCCGTATGCTTAGACTAGGAATGAA
Found at i:5960696 original size:26 final size:26
Alignment explanation
Indices: 5960660--5960712 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5960650 CTGGTCCAAT
*
5960660 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5960686 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5960712 C
1 C
5960713 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5961061 original size:6 final size:6
Alignment explanation
Indices: 5961050--5961085 Score: 56
Period size: 6 Copynumber: 6.0 Consensus size: 6
5961040 TATCTTTGTC
5961050 ATTTTT ATTTTT ATTTTT A-TTTT ATTTTAT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTT-T ATTTTT
5961086 TGTATATCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 5 0.18
6 17 0.61
7 6 0.21
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
ATTTTT
Found at i:5961067 original size:12 final size:12
Alignment explanation
Indices: 5961050--5961085 Score: 56
Period size: 11 Copynumber: 3.0 Consensus size: 12
5961040 TATCTTTGTC
5961050 ATTTTTATTTTT
1 ATTTTTATTTTT
5961062 ATTTTTA-TTTT
1 ATTTTTATTTTT
5961073 ATTTTATATTTTT
1 ATTTT-TATTTTT
5961086 TGTATATCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 9 0.41
12 9 0.41
13 4 0.18
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (12 bp):
ATTTTTATTTTT
Found at i:5961072 original size:11 final size:11
Alignment explanation
Indices: 5961050--5961175 Score: 55
Period size: 11 Copynumber: 10.4 Consensus size: 11
5961040 TATCTTTGTC
5961050 ATTTTTATTTTT
1 ATTTTTA-TTTT
5961062 ATTTTTATTTT
1 ATTTTTATTTT
5961073 ATTTTATATTTT
1 ATTTT-TATTTT
*
5961085 -TTGTATATCCTATGT
1 ATT-TTTAT--T-T-T
5961100 ATTTATTA-TTT
1 ATTT-TTATTTT
5961111 ATTTATTATTAATAAT
1 ATTT-TTATT--T--T
5961127 ATATTTT-TTTT
1 AT-TTTTATTTT
5961138 ATTTTTTATTTT
1 A-TTTTTATTTT
5961150 ATTTATT-TTTGT
1 ATTT-TTATTT-T
5961162 ATTTTTA-TTT
1 ATTTTTATTTT
5961172 ATTT
1 ATTT
5961176 AATTATATAT
Statistics
Matches: 93, Mismatches: 2, Indels: 40
0.69 0.01 0.30
Matches are distributed among these distances:
10 5 0.05
11 39 0.42
12 29 0.31
13 3 0.03
14 2 0.02
15 4 0.04
16 9 0.10
17 2 0.02
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.73
Consensus pattern (11 bp):
ATTTTTATTTT
Found at i:5961112 original size:4 final size:4
Alignment explanation
Indices: 5961099--5961205 Score: 52
Period size: 4 Copynumber: 27.8 Consensus size: 4
5961089 ATATCCTATG
* *
5961099 TATT TA-T TATT TATT TA-T TATT AATAA TATAT T-TT T-TT TATT T-TT
1 TATT TATT TATT TATT TATT TATT TAT-T TAT-T TATT TATT TATT TATT
* *
5961144 TATTT TATT TATT T-TT GTA-T T-TT TATT TATT TAAT TATA TA-T TATT
1 TA-TT TATT TATT TATT -TATT TATT TATT TATT TATT TATT TATT TATT
* *
5961190 GTTTT TATT TTTT TAT
1 -TATT TATT TATT TAT
5961206 CCTATAATAT
Statistics
Matches: 79, Mismatches: 12, Indels: 24
0.69 0.10 0.21
Matches are distributed among these distances:
3 21 0.27
4 47 0.59
5 11 0.14
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (4 bp):
TATT
Found at i:5961149 original size:16 final size:17
Alignment explanation
Indices: 5961128--5961175 Score: 71
Period size: 16 Copynumber: 2.8 Consensus size: 17
5961118 ATTAATAATA
5961128 TATTTTTTTTATTTTT-
1 TATTTTTTTTATTTTTG
*
5961144 TATTTTATTTATTTTTG
1 TATTTTTTTTATTTTTG
5961161 TATTTTTATTTATTT
1 TATTTTT-TTTATTT
5961176 AATTATATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 15 0.54
17 6 0.21
18 7 0.25
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (17 bp):
TATTTTTTTTATTTTTG
Found at i:5961169 original size:18 final size:17
Alignment explanation
Indices: 5961051--5961175 Score: 87
Period size: 18 Copynumber: 7.1 Consensus size: 17
5961041 ATCTTTGTCA
5961051 TTTTTATTTTTATTT-T
1 TTTTTATTTTTATTTAT
5961067 TATTTTATTTTATATTT-T
1 T-TTTTATTTT-TATTTAT
* *
5961085 TTGTATATCCTATGTATTTAT
1 TT-TTTAT--T-TTTATTTAT
* *
5961106 TATTTATTTATTATTAAT
1 TTTTTATTT-TTATTTAT
** *
5961124 AATATATTTTT-TTTAT
1 TTTTTATTTTTATTTAT
5961140 TTTTTA-TTTTATTTAT
1 TTTTTATTTTTATTTAT
5961156 TTTTGTATTTTTATTTAT
1 TTTT-TATTTTTATTTAT
5961174 TT
1 TT
5961176 AATTATATAT
Statistics
Matches: 86, Mismatches: 12, Indels: 20
0.73 0.10 0.17
Matches are distributed among these distances:
15 4 0.05
16 17 0.20
17 15 0.17
18 37 0.43
20 10 0.12
21 3 0.03
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.74
Consensus pattern (17 bp):
TTTTTATTTTTATTTAT
Found at i:5961176 original size:22 final size:22
Alignment explanation
Indices: 5961128--5961176 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
5961118 ATTAATAATA
5961128 TATTT-TTTTTATTTTTTATTT
1 TATTTATTTTTATTTTTTATTT
*
5961149 TATTTATTTTTGTATTTTTA-TT
1 TATTTATTTTTAT-TTTTTATTT
5961171 TATTTA
1 TATTTA
5961177 ATTATATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 5 0.20
22 14 0.56
23 6 0.24
ACGTcount: A:0.18, C:0.00, G:0.02, T:0.80
Consensus pattern (22 bp):
TATTTATTTTTATTTTTTATTT
Found at i:5961186 original size:22 final size:23
Alignment explanation
Indices: 5961140--5961199 Score: 61
Period size: 22 Copynumber: 2.6 Consensus size: 23
5961130 TTTTTTTTAT
* * *
5961140 TTTTTATTTTATTTATTTTTGTA
1 TTTTTATTTTATTTAATTATATA
5961163 TTTTTA-TTTATTTAATTATATA
1 TTTTTATTTTATTTAATTATATA
5961185 TTATTGT-TTTTATTT
1 TT-TT-TATTTTATTT
5961200 TTTTATCCTA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
22 15 0.48
23 8 0.26
24 8 0.26
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (23 bp):
TTTTTATTTTATTTAATTATATA
Found at i:5961211 original size:27 final size:27
Alignment explanation
Indices: 5961163--5961224 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
5961153 TATTTTTGTA
* *
5961163 TTTTTATTTATTTAATTATATATTATT
1 TTTTTATTTATTTAATCATATAATATT
* *
5961190 GTTTTTATTT-TTTTATCCTATAATATT
1 -TTTTTATTTATTTAATCATATAATATT
5961217 TTTTTATT
1 TTTTTATT
5961225 ATCTTTTCTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 8 0.27
27 13 0.43
28 9 0.30
ACGTcount: A:0.24, C:0.03, G:0.02, T:0.71
Consensus pattern (27 bp):
TTTTTATTTATTTAATCATATAATATT
Found at i:5961224 original size:8 final size:8
Alignment explanation
Indices: 5961131--5961205 Score: 57
Period size: 9 Copynumber: 9.1 Consensus size: 8
5961121 AATAATATAT
5961131 TTTTTTTA
1 TTTTTTTA
5961139 -TTTTTTA
1 TTTTTTTA
5961146 TTTTATTTA
1 TTTT-TTTA
*
5961155 TTTTTGTA
1 TTTTTTTA
5961163 --TTTTTA
1 TTTTTTTA
*
5961169 TTTATTTAA
1 TTT-TTTTA
*
5961178 TTATATATTA
1 TT-T-TTTTA
5961188 TTGTTTTTA
1 TT-TTTTTA
5961197 TTTTTTTA
1 TTTTTTTA
5961205 T
1 T
5961206 CCTATAATAT
Statistics
Matches: 54, Mismatches: 7, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
6 5 0.09
7 7 0.13
8 14 0.26
9 20 0.37
10 8 0.15
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (8 bp):
TTTTTTTA
Found at i:5962086 original size:12 final size:12
Alignment explanation
Indices: 5962071--5962211 Score: 60
Period size: 12 Copynumber: 11.4 Consensus size: 12
5962061 TTTTTTTTGA
5962071 ATTTTTTTATTT
1 ATTTTTTTATTT
*
5962083 ATTTGTTTATTT
1 ATTTTTTTATTT
*
5962095 ATTTGTTTATTT
1 ATTTTTTTATTT
*
5962107 -TATTTGTT-TTT
1 AT-TTTTTTATTT
* *
5962118 ATATTTATTAGATT
1 AT-TTTTTTA-TTT
*
5962132 AGGTTTTATTTA-AT
1 A--TTTT-TTTATTT
*
5962146 ATTTTTTATCTTT
1 ATTTTTT-TATTT
* *
5962159 ATCTTATT-TTT
1 ATTTTTTTATTT
*
5962170 ATTTTTGT-TTT
1 ATTTTTTTATTT
5962181 ACTTTTCTTTATTT
1 A-TTTT-TTTATTT
5962195 -TTATTTTTATTT
1 ATT-TTTTTATTT
5962207 ATTTT
1 ATTTT
5962212 CACTTTTATT
Statistics
Matches: 100, Mismatches: 15, Indels: 28
0.70 0.10 0.20
Matches are distributed among these distances:
11 18 0.18
12 55 0.55
13 12 0.12
14 8 0.08
15 3 0.03
16 4 0.04
ACGTcount: A:0.18, C:0.03, G:0.05, T:0.74
Consensus pattern (12 bp):
ATTTTTTTATTT
Found at i:5962143 original size:4 final size:4
Alignment explanation
Indices: 5962071--5962126 Score: 51
Period size: 4 Copynumber: 13.8 Consensus size: 4
5962061 TTTTTTTTGA
* * * *
5962071 ATTT TTTT ATTT ATTT GTTT ATTT ATTT GTTT ATTTT ATTT GTTT -TTAT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT A-TTT ATTT ATTT ATT-T
5962120 ATTT ATT
1 ATTT ATT
5962127 AGATTAGGTT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
3 2 0.05
4 34 0.81
5 6 0.14
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.77
Consensus pattern (4 bp):
ATTT
Found at i:5962170 original size:11 final size:10
Alignment explanation
Indices: 5962074--5962230 Score: 60
Period size: 11 Copynumber: 15.2 Consensus size: 10
5962064 TTTTTGAATT
5962074 TTTTTATTTA
1 TTTTTATTTA
5962084 TTTGTTTATTTA
1 -TT-TTTATTTA
*
5962096 --TTTGTTTA
1 TTTTTATTTA
*
5962104 -TTTTATTTG
1 TTTTTATTTA
5962113 TTTTTA--TA
1 TTTTTATTTA
*
5962121 TTTATTAGATTA
1 TTT-TTA-TTTA
*
5962133 GGTTTTATTTAA
1 -TTTTTATTT-A
*
5962145 TATTT-TTTA
1 TTTTTATTTA
*
5962154 TCTTTATCTTA
1 TTTTTAT-TTA
*
5962165 TTTTTATTTT
1 TTTTTATTTA
5962175 TGTTTTACTTT-
1 T-TTTTA-TTTA
*
5962186 TCTTTATTTTTA
1 T-TTT-TATTTA
5962198 TTTTTATTTA
1 TTTTTATTTA
*
5962208 TTTTCACTTTTA
1 TTTTTA--TTTA
5962220 TTTTT-TTTA
1 TTTTTATTTA
5962229 TT
1 TT
5962231 ATTCTATTTT
Statistics
Matches: 113, Mismatches: 16, Indels: 36
0.68 0.10 0.22
Matches are distributed among these distances:
8 11 0.10
9 20 0.18
10 22 0.19
11 31 0.27
12 27 0.24
13 2 0.02
ACGTcount: A:0.18, C:0.04, G:0.04, T:0.74
Consensus pattern (10 bp):
TTTTTATTTA
Found at i:5962185 original size:27 final size:28
Alignment explanation
Indices: 5962149--5962202 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
5962139 ATTTAATATT
5962149 TTTTATCTTTATC-TTATTTTTATTTTTG
1 TTTTATCTTT-TCTTTATTTTTATTTTTG
5962177 TTTTA-CTTTTCTTTATTTTTATTTTT
1 TTTTATCTTTTCTTTATTTTTATTTTT
5962203 ATTTATTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 2 0.08
27 18 0.72
28 5 0.20
ACGTcount: A:0.13, C:0.07, G:0.02, T:0.78
Consensus pattern (28 bp):
TTTTATCTTTTCTTTATTTTTATTTTTG
Found at i:5962202 original size:16 final size:16
Alignment explanation
Indices: 5962162--5962230 Score: 77
Period size: 16 Copynumber: 4.3 Consensus size: 16
5962152 TATCTTTATC
*
5962162 TTATTTTTATTTTTGTT
1 TTATTTTTATTTAT-TT
* *
5962179 TTACTTTTCTTTATTT
1 TTATTTTTATTTATTT
5962195 TTATTTTTATTTATTT
1 TTATTTTTATTTATTT
* *
5962211 TCACTTTTATTT-TTT
1 TTATTTTTATTTATTT
5962226 TTATT
1 TTATT
5962231 ATTCTATTTT
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
15 6 0.14
16 26 0.60
17 11 0.26
ACGTcount: A:0.14, C:0.06, G:0.01, T:0.78
Consensus pattern (16 bp):
TTATTTTTATTTATTT
Found at i:5962205 original size:6 final size:6
Alignment explanation
Indices: 5962148--5962233 Score: 54
Period size: 6 Copynumber: 14.3 Consensus size: 6
5962138 TATTTAATAT
* * * *
5962148 TTTTTA TCTTTA -TCTTA TTTTTA TTTTTG TTTTACTT TTCTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT--TA TT-TTTA TTTTTA
* *
5962198 TTTTTA --TTTA TTTTCA CTTTTA TTTTT- TTTATTA TT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT-TTA TT
5962234 CTATTTTCTT
Statistics
Matches: 61, Mismatches: 11, Indels: 15
0.70 0.13 0.17
Matches are distributed among these distances:
4 4 0.07
5 6 0.10
6 41 0.67
7 5 0.08
8 3 0.05
9 2 0.03
ACGTcount: A:0.15, C:0.07, G:0.01, T:0.77
Consensus pattern (6 bp):
TTTTTA
Found at i:5962217 original size:27 final size:27
Alignment explanation
Indices: 5962162--5962241 Score: 85
Period size: 27 Copynumber: 2.9 Consensus size: 27
5962152 TATCTTTATC
*
5962162 TTATTTTTATTTTTGTTTTACTTTT-C-T
1 TTATTTTTATTTTT-ATTTA-TTTTCCTT
5962189 TTATTTTTATTTTTATTTATTTTCACTT
1 TTATTTTTATTTTTATTTATTTTC-CTT
5962217 TTATTTTT-TTTATTATTCTATTTTC
1 TTATTTTTATTT-TTATT-TATTTTC
5962242 TTTAAATAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
25 4 0.09
26 4 0.09
27 18 0.38
28 14 0.30
29 7 0.15
ACGTcount: A:0.15, C:0.07, G:0.01, T:0.76
Consensus pattern (27 bp):
TTATTTTTATTTTTATTTATTTTCCTT
Found at i:5962538 original size:57 final size:57
Alignment explanation
Indices: 5962266--5962718 Score: 581
Period size: 57 Copynumber: 7.7 Consensus size: 57
5962256 AAAAGTTCCA
* * * *
5962266 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAATTTC
1 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTC
* *
5962324 TAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCCATTTTCCTTAAAAATAAATTTTTTTTTTAA
1 -AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA------TTTT-C
* * **
5962389 AAAAAAGGGATTTTT-GAGGAAAAGTTGAAAGTATTAATTTTCCTTTGAAATAAATTTTC
1 AAAAAA--TATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
*
5962448 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 --AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
*
5962507 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATTAAA--TTC
1 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAATAAATTTTC
* *
5962563 AAAAATATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCC
1 AAAAA-ATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* *
5962621 AAAAAATATTTTTAGGGAAAAATTGAAAGTATCAATTTTCCTAAAAAATAAA-TTTC
1 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
5962677 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
1 -AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
5962719 CTACACAAGA
Statistics
Matches: 350, Mismatches: 26, Indels: 38
0.85 0.06 0.09
Matches are distributed among these distances:
56 19 0.05
57 163 0.47
58 18 0.05
59 90 0.26
60 5 0.01
61 6 0.02
64 9 0.03
65 1 0.00
66 39 0.11
ACGTcount: A:0.44, C:0.07, G:0.12, T:0.36
Consensus pattern (57 bp):
AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Found at i:5966652 original size:23 final size:22
Alignment explanation
Indices: 5966617--5966676 Score: 75
Period size: 23 Copynumber: 2.7 Consensus size: 22
5966607 ACAATGGATG
*
5966617 AAAAATGAGAAAAAAAAAGAGAA
1 AAAAATGAAAAAAAAAAAGA-AA
* **
5966640 GATGATGAAAAAAAAAAAGAAA
1 AAAAATGAAAAAAAAAAAGAAA
5966662 AAAAATGAAAAAAAA
1 AAAAATGAAAAAAAA
5966677 TGAGAAAATG
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
22 14 0.47
23 16 0.53
ACGTcount: A:0.78, C:0.00, G:0.15, T:0.07
Consensus pattern (22 bp):
AAAAATGAAAAAAAAAAAGAAA
Found at i:5966672 original size:18 final size:18
Alignment explanation
Indices: 5966650--5966694 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
5966640 GATGATGAAA
*
5966650 AAAAAAAAGAAAAAAAATG
1 AAAAAAAA-TAAAAAAATG
* *
5966669 AAAAAAAATGAGAAAATG
1 AAAAAAAATAAAAAAATG
5966687 AAAAAAAA
1 AAAAAAAA
5966695 GGGATTCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 15 0.65
19 8 0.35
ACGTcount: A:0.82, C:0.00, G:0.11, T:0.07
Consensus pattern (18 bp):
AAAAAAAATAAAAAAATG
Found at i:5966677 original size:10 final size:10
Alignment explanation
Indices: 5966649--5966694 Score: 60
Period size: 10 Copynumber: 4.8 Consensus size: 10
5966639 AGATGATGAA
*
5966649 AAAAAAAAAG
1 AAAAAAAATG
5966659 AAAAAAAATG
1 AAAAAAAATG
5966669 AAAAAAAATG
1 AAAAAAAATG
*
5966679 --AGAAAATG
1 AAAAAAAATG
5966687 AAAAAAAA
1 AAAAAAAA
5966695 GGGATTCAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
8 7 0.23
10 24 0.77
ACGTcount: A:0.83, C:0.00, G:0.11, T:0.07
Consensus pattern (10 bp):
AAAAAAAATG
Found at i:5967791 original size:22 final size:23
Alignment explanation
Indices: 5967766--5967824 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 23
5967756 GAATGTTTTG
*
5967766 ATGAGAATTTTTGAGAACTC-AA
1 ATGAGAATCTTTGAGAACTCAAA
**
5967788 ATGAGAATCTTTGA-ATTTCAAA
1 ATGAGAATCTTTGAGAACTCAAA
5967810 ATGAGAATCTTTGAG
1 ATGAGAATCTTTGAG
5967825 GAGTGAAATC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 29 0.91
ACGTcount: A:0.39, C:0.08, G:0.19, T:0.34
Consensus pattern (23 bp):
ATGAGAATCTTTGAGAACTCAAA
Found at i:5968060 original size:43 final size:41
Alignment explanation
Indices: 5968012--5968144 Score: 133
Period size: 43 Copynumber: 3.1 Consensus size: 41
5968002 TTGAACTCAG
5968012 ATGAAAAGCTTTGAATTTTTGGATGTGAATTTCCAAAATTCAA
1 ATGAAAAGCTTT-AATTTTTGGATGTGAA-TTCCAAAATTCAA
* **
5968055 ATGAAAAGCTTTAGATTTTTGGATATGAATTCCAAGTTTGCCAA
1 ATGAAAAGCTTTA-ATTTTTGGATGTGAATTCCAAAATT--CAA
* * **
5968099 AT-AAGAACCTTTAACTTTTGGATGTGAGCCTCCAAAATTCAA
1 ATGAA-AAGCTTTAATTTTTGGATGTGA-ATTCCAAAATTCAA
5968141 ATGA
1 ATGA
5968145 GGATCTTTCA
Statistics
Matches: 74, Mismatches: 10, Indels: 12
0.77 0.10 0.12
Matches are distributed among these distances:
42 14 0.19
43 41 0.55
44 19 0.26
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.35
Consensus pattern (41 bp):
ATGAAAAGCTTTAATTTTTGGATGTGAATTCCAAAATTCAA
Found at i:5968393 original size:28 final size:28
Alignment explanation
Indices: 5968361--5968414 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
5968351 TTACTTTCCA
5968361 AAAGTCGTGGTGCCTCTATTTAGAGGGG
1 AAAGTCGTGGTGCCTCTATTTAGAGGGG
*
5968389 AAAGTCGTGGTGCCTCTGTTTAGAGG
1 AAAGTCGTGGTGCCTCTATTTAGAGG
5968415 AGCAATTTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.20, C:0.15, G:0.35, T:0.30
Consensus pattern (28 bp):
AAAGTCGTGGTGCCTCTATTTAGAGGGG
Found at i:5968529 original size:41 final size:41
Alignment explanation
Indices: 5968389--5968542 Score: 245
Period size: 42 Copynumber: 3.7 Consensus size: 41
5968379 TTTAGAGGGG
*
5968389 AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTA
1 AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTC-C
*
5968431 AAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTTACTTTTCC
1 AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTAC-TTTCC
*
5968473 AAAGTCGTGGTGCCTCTGTTTCGAGGAGCAATTTACTTTCC
1 AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCC
* *
5968514 AAAGTCGTCGAGCCTCTGTTTAGAGGAGC
1 AAAGTCGTGGTGCCTCTGTTTAGAGGAGC
5968543 TTTTAAAAAA
Statistics
Matches: 104, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
41 31 0.30
42 69 0.66
43 4 0.04
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (41 bp):
AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCC
Found at i:5968616 original size:85 final size:88
Alignment explanation
Indices: 5968509--5968730 Score: 236
Period size: 100 Copynumber: 2.4 Consensus size: 88
5968499 AGCAATTTAC
* * * *
5968509 TTTC-CAAAGTCGTCGAGCCTCTGTTTAGAGGAGCTTTT-AAAAAAA-AAAA-AAAAGTTGCCTC
1 TTTCTCAAAGTCATTGAGCCTCTGCTTAGAGGAGCTTTTAAAAAAAACAAAACAAAAATTGCCTC
5968570 TATTTAGAGGAGCTTCATTTATG
66 TATTTAGAGGAGCTTCATTTATG
5968593 TTTCTCAAAGTCATTGAGCCTCTGCTTAGAGGAGCTTTGATCATTTAAAAAAAAAAAAACAAAAC
1 TTTCTCAAAGTCATTGAGCCTCTGCTTAGAGGAGC-----T--TTT-----AAAAAAAACAAAAC
**
5968658 AAAAATTGCCTCTATTTAGAGGAGCTTTGTTTATG
54 AAAAATTGCCTCTATTTAGAGGAGCTTCATTTATG
* *
5968693 TTTCTCAAAGTCATTGAACCTCTGCTTAGAAGAGCTTT
1 TTTCTCAAAGTCATTGAGCCTCTGCTTAGAGGAGCTTT
5968731 GATCAAATTT
Statistics
Matches: 114, Mismatches: 8, Indels: 23
0.79 0.06 0.16
Matches are distributed among these distances:
84 4 0.04
85 27 0.24
90 1 0.01
92 3 0.03
93 2 0.02
95 1 0.01
98 7 0.06
99 4 0.04
100 65 0.57
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (88 bp):
TTTCTCAAAGTCATTGAGCCTCTGCTTAGAGGAGCTTTTAAAAAAAACAAAACAAAAATTGCCTC
TATTTAGAGGAGCTTCATTTATG
Found at i:5968669 original size:100 final size:99
Alignment explanation
Indices: 5968547--5968764 Score: 339
Period size: 100 Copynumber: 2.2 Consensus size: 99
5968537 AGGAGCTTTT
* *
5968547 AAAAAAAAAAAAAAAGTTGCCTCTATTTAGAGGAGCTTCATTTATGTTTCTCAAAGTCATTGAGC
1 AAAAAAAAAAAAAAAATTGCCTCTATTTAGAGGAGCTTCATTTATGTTTCTCAAAGTCATTGAAC
*
5968612 CTCTGCTTAGAGGAGCTTTGATC-ATTTAAAAAA
66 CTCTGCTTAGAAGAGCTTTGATCAATTTAAAAAA
**
5968645 AAAAAAACAAAACAAAAATTGCCTCTATTTAGAGGAGCTTTGTTTATGTTTCTCAAAGTCATTGA
1 AAAAAAA-AAAA-AAAAATTGCCTCTATTTAGAGGAGCTTCATTTATGTTTCTCAAAGTCATTGA
5968710 ACCTCTGCTTAGAAGAGCTTTGATCAAATTTAAAAAA
64 ACCTCTGCTTAGAAGAGCTTTGATC-AATTTAAAAAA
5968747 AAAGCAAAAAAAAAAAAA
1 AAA--AAAAAAAAAAAAA
5968765 AGCAAAAAAA
Statistics
Matches: 109, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
98 7 0.06
99 4 0.04
100 72 0.66
102 18 0.17
103 4 0.04
104 4 0.04
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (99 bp):
AAAAAAAAAAAAAAAATTGCCTCTATTTAGAGGAGCTTCATTTATGTTTCTCAAAGTCATTGAAC
CTCTGCTTAGAAGAGCTTTGATCAATTTAAAAAA
Found at i:5968757 original size:9 final size:8
Alignment explanation
Indices: 5968743--5968784 Score: 50
Period size: 9 Copynumber: 5.0 Consensus size: 8
5968733 TCAAATTTAA
5968743 AAAAAAAG
1 AAAAAAAG
5968751 CAAAAAAA-
1 -AAAAAAAG
5968759 AAAAAAAG
1 AAAAAAAG
5968767 CAAAAAAATG
1 -AAAAAAA-G
5968777 AAAAAAAG
1 AAAAAAAG
5968785 TTACCTCTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
7 7 0.23
8 1 0.03
9 21 0.70
10 1 0.03
ACGTcount: A:0.83, C:0.05, G:0.10, T:0.02
Consensus pattern (8 bp):
AAAAAAAG
Found at i:5968764 original size:18 final size:16
Alignment explanation
Indices: 5968741--5968784 Score: 70
Period size: 16 Copynumber: 2.6 Consensus size: 16
5968731 GATCAAATTT
5968741 AAAAAAAAAGCAAAAA
1 AAAAAAAAAGCAAAAA
5968757 AAAAAAAAAGCAAAAA
1 AAAAAAAAAGCAAAAA
5968773 AATGAAAAAAAG
1 AA--AAAAAAAG
5968785 TTACCTCTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 18 0.69
18 8 0.31
ACGTcount: A:0.84, C:0.05, G:0.09, T:0.02
Consensus pattern (16 bp):
AAAAAAAAAGCAAAAA
Found at i:5969048 original size:6 final size:6
Alignment explanation
Indices: 5969037--5969071 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
5969027 TATCTTTGTC
5969037 ATTTTT ATTTTT ATTTTT A-TTTT ATTTTAT ATTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTT-T ATTTT
5969072 ATGTATATCC
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.19
6 16 0.59
7 6 0.22
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (6 bp):
ATTTTT
Found at i:5969059 original size:11 final size:11
Alignment explanation
Indices: 5969037--5969166 Score: 61
Period size: 11 Copynumber: 11.4 Consensus size: 11
5969027 TATCTTTGTC
5969037 ATTTTTATTTTT
1 ATTTTTA-TTTT
5969049 ATTTTTATTTT
1 ATTTTTATTTT
5969060 ATTTTATATTTT
1 ATTTT-TATTTT
* * **
5969072 ATGTATATCCT
1 ATTTTTATTTT
5969083 ATGTATTTATTATT
1 AT-T-TTTATT-TT
*
5969097 -TATTTATTATT
1 ATTTTTATT-TT
* ** *
5969108 AATAATATATAT
1 ATTTTTAT-TTT
*
5969120 ATTTTTATTAT
1 ATTTTTATTTT
5969131 -TTTTTATTTT
1 ATTTTTATTTT
5969141 ATTTATT-TTTGT
1 ATTT-TTATTT-T
5969153 ATTTTTA-TTT
1 ATTTTTATTTT
5969163 ATTT
1 ATTT
5969167 AATTATATAT
Statistics
Matches: 90, Mismatches: 18, Indels: 22
0.69 0.14 0.17
Matches are distributed among these distances:
10 14 0.16
11 37 0.41
12 32 0.36
13 6 0.07
14 1 0.01
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (11 bp):
ATTTTTATTTT
Found at i:5969099 original size:4 final size:4
Alignment explanation
Indices: 5969086--5969190 Score: 50
Period size: 4 Copynumber: 27.8 Consensus size: 4
5969076 ATATCCTATG
* * *
5969086 TATT TA-T TATT TATT TA-T TATT AATAA TATA TATAT T-TT TA-T TATT
1 TATT TATT TATT TATT TATT TATT TAT-T TATT TAT-T TATT TATT TATT
* *
5969132 T-TT TATTT TATT TATT T-TT GTA-T T-TT TATT TATT TAAT TATA TA-T
1 TATT TA-TT TATT TATT TATT -TATT TATT TATT TATT TATT TATT TATT
*
5969177 TA-T TATT TTTT TAT
1 TATT TATT TATT TAT
5969191 CCTATAATTT
Statistics
Matches: 78, Mismatches: 10, Indels: 26
0.68 0.09 0.23
Matches are distributed among these distances:
3 24 0.31
4 47 0.60
5 7 0.09
ACGTcount: A:0.29, C:0.00, G:0.01, T:0.70
Consensus pattern (4 bp):
TATT
Found at i:5969177 original size:22 final size:22
Alignment explanation
Indices: 5969131--5969189 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
5969121 TTTTTATTAT
* * *
5969131 TTTTTATTTTATTTATTTTTGTA
1 TTTTTA-TTTATTTAATTATATA
5969154 TTTTTATTTATTTAATTATATA
1 TTTTTATTTATTTAATTATATA
* *
5969176 TTATTATTTTTTTA
1 TTTTTATTTATTTA
5969190 TCCTATAATT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
22 25 0.81
23 6 0.19
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.75
Consensus pattern (22 bp):
TTTTTATTTATTTAATTATATA
Found at i:5969190 original size:18 final size:19
Alignment explanation
Indices: 5969115--5969190 Score: 70
Period size: 18 Copynumber: 4.2 Consensus size: 19
5969105 ATTAATAATA
5969115 TATATATT-TTTATTATTTT
1 TATATATTATTTATT-TTTT
* *
5969134 T-TATTTTATTTATTTTTG
1 TATATATTATTTATTTTTT
* **
5969152 TAT-TTTTATTTATTTAAT
1 TATATATTATTTATTTTTT
5969170 TATATATTA-TTATTTTTT
1 TATATATTATTTATTTTTT
5969188 TAT
1 TAT
5969191 CCTATAATTT
Statistics
Matches: 46, Mismatches: 8, Indels: 7
0.75 0.13 0.11
Matches are distributed among these distances:
18 34 0.74
19 12 0.26
ACGTcount: A:0.25, C:0.00, G:0.01, T:0.74
Consensus pattern (19 bp):
TATATATTATTTATTTTTT
Found at i:5970077 original size:7 final size:7
Alignment explanation
Indices: 5970065--5970089 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
5970055 CGCTCCAGGT
5970065 TTTTTTA
1 TTTTTTA
5970072 TTTTTTA
1 TTTTTTA
5970079 TTTTTTA
1 TTTTTTA
5970086 TTTT
1 TTTT
5970090 ATTTGTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:5970167 original size:27 final size:28
Alignment explanation
Indices: 5970131--5970184 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
5970121 ATTTAATATT
5970131 TTTTATCTTTACCTTATTTTTATTTTTG
1 TTTTATCTTTACCTTATTTTTATTTTTG
* * *
5970159 TTTTA-CTTTTCTTTGTTTTTATTTTT
1 TTTTATCTTTACCTTATTTTTATTTTT
5970185 ATTTATTTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 18 0.78
28 5 0.22
ACGTcount: A:0.11, C:0.09, G:0.04, T:0.76
Consensus pattern (28 bp):
TTTTATCTTTACCTTATTTTTATTTTTG
Found at i:5970184 original size:16 final size:15
Alignment explanation
Indices: 5970144--5970227 Score: 69
Period size: 16 Copynumber: 5.2 Consensus size: 15
5970134 TATCTTTACC
5970144 TTATTTTTATTTTTGTT
1 TTATTTTTA-TTTT-TT
* *
5970161 TTACTTTTCTTTGTTT
1 TTATTTTTATTT-TTT
5970177 TTATTTTTATTTATTT
1 TTATTTTTATTT-TTT
* *
5970193 TCACTTTTATTTTTT
1 TTATTTTTATTTTTT
*
5970208 TTATTATTCTATTTTCT
1 TTATT-TT-TATTTTTT
5970225 TTA
1 TTA
5970228 AATAAAAATC
Statistics
Matches: 54, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
15 6 0.11
16 30 0.56
17 18 0.33
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.76
Consensus pattern (15 bp):
TTATTTTTATTTTTT
Found at i:5970476 original size:127 final size:124
Alignment explanation
Indices: 5970264--5970497 Score: 337
Period size: 127 Copynumber: 1.9 Consensus size: 124
5970254 ATATTTTTGG
*
5970264 GGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAATTTTCGAAAAATATTTTTAGAGAAAA
1 GGAAAAGTTGAAAGTATCAATCTTCCTTGAAAAT-AAAATTTTCAAAAAATATTTTTAGAGAAAA
* *
5970329 GTTGAAAGTATCCATTTTCCTTAAAAATAAATTTTCAAAAAAAAAAAAAGGGATTTTTAA
65 GTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCAAAAAAAAAAAAAGGGATTTTTAA
* * * *
5970389 GGAAAGGTTGAAAGTATCAATTTTCCTTTG-AAAT-AAATTTTCAAAAAAAAAATATTTTTGGGG
1 GGAAAAGTTGAAAGTATCAATCTTCC-TTGAAAATAAAATTTTC----AAAAAATATTTTTAGAG
5970452 AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCAAAAAA
61 AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCAAAAAA
5970498 TATTTTTAGG
Statistics
Matches: 97, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
123 8 0.08
125 28 0.29
126 3 0.03
127 58 0.60
ACGTcount: A:0.47, C:0.09, G:0.12, T:0.32
Consensus pattern (124 bp):
GGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATAAAATTTTCAAAAAATATTTTTAGAGAAAAG
TTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCAAAAAAAAAAAAAGGGATTTTTAA
Found at i:5972338 original size:26 final size:26
Alignment explanation
Indices: 5972298--5972350 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5972288 CTAGTTCGAT
5972298 CTTAGACTGGCAATGAACTCTGTATG
1 CTTAGACTGGCAATGAACTCTGTATG
*
5972324 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGCAATGAACTCTGTATG
5972350 C
1 C
5972351 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCTGTATG
Found at i:5976110 original size:713 final size:710
Alignment explanation
Indices: 5974684--5976008 Score: 1846
Period size: 713 Copynumber: 1.9 Consensus size: 710
5974674 CACAACCTTC
* * *
5974684 GATCTGGTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACAAAATGAGCGGG
1 GATCCGGTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAATCAGCGGG
* * *
5974749 CGGGCGGGCGGCCAGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCATGGATCGATAGGG
66 CGAGAGGGCGGCCAGGCACTACGCCGACCAGAGAGACGAGATGCGCAAGCCATGGATCGATAGGG
* **
5974814 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGGCATTTTTTTTTCTTGTAAA
131 TGGTAGGTGGGTTTAGGCACATCTTCATATTTATG-ATGCCAATGGCATTTTTTTGGCTTGTAAA
5974879 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTT
195 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTT
**
5974944 TCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCACAACGAGTTTTGGTC
260 TCACGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCACAACGAGTTTTGGTC
* * * * *
5975009 CCAAACTTAGTAGATGTGATCCTTTTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAAT
325 CCAAACTTAGTAGACGGGATCCTTGTATTTTTATTGGCATGCAAAAAAAAATTCAGCTAAAAAAT
5975074 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
390 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
5975139 CTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGAGTTCTCGAGGTTTGATGAGGG
455 CTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGAGTTCTCGAGGTTTGATGAGGG
** *
5975204 ATAGGGGGCCAAATTAAGGGCCAAGTACTAGCATCCATCGCACATCATGTGCGCCCACTTCCCGG
520 ATAGGGGGCCAAATTAAGGGCCAAGTACTAGCATCCATCGCACATCATGTGCGCCCACCGCCCCG
* * * * * * ** *
5975269 CCCCCCGTGTGCCTAAGTCAACCATGAAACGGGCATACGGGCGCTCAGCCGCCAGAGGGGCGGGA
585 CCCCCCGTGCGCCGAACTC-ACAATG-AACGGG-ATACAGGCGCTCACCCGCCAGAGGCCCGCGA
* **** * ** * * * * *
5975334 TGCGCAAGCCGGGGATCGGTCGGATCCCCCTCTATATGCCTACCAATCCTACTGTTTGCAACCCA
647 TGCGC-ACCCGGGGAAAAATCGGA-CACCAGCTACATGCATACCAAGCATACTGTCTGCAACCCA
5975399 T
710 T
* * *
5975400 GATCCGGTCTGATCTTAGACTTGGAATGAACTCCGTCTGCCTAAGCCAACCGACGAAA-CAGCGG
1 GATCCGGTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAATCAGCGG
* * * * * *
5975464 GCGAGAGGGCGGGCGGGCACTACGTCGACCAGAGAGGCGGGATGCGCAAGCCATGGATTGATAGG
65 GCGAGAGGGCGGCCAGGCACTACGCCGACCAGAGAGACGAGATGCGCAAGCCATGGATCGATAGG
5975529 GTGGTAGGTGGGTTTAGGCACATCTTCATATTCTATG-TGCC-AT-GC-TTTTTTATGGCTTGTA
130 GTGGTAGGTGGGTTTAGGCACATCTTCATATT-TATGATGCCAATGGCATTTTTT-TGGCTTGTA
* *
5975590 AATTCATACAATGGTCCCTTAAGCCTTCACGTGCAGTTTCATGGCAAGACGACTCGTTTTCTATT
193 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATT
** * *
5975655 TTTCACGATTTTCAAAACTTTTTGTGGTTCAAGATTTTTTAAAATTTTTTTGA-AAGGAG-TTTG
258 TTTCACGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAA-TTTTTTCACAACGAGTTTTG
* *
5975718 G-CCCAAGCTTGGTAGACGGGATCCTTGTATTTTTATTGGCATGCAAAAAAAAATTCAGCT-AAA
322 GTCCCAAACTTAGTAGACGGGATCCTTGTATTTTTATTGGCATGCAAAAAAAAATTCAGCTAAAA
* **
5975781 ACTCGAAGTGTACAATTTTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTCAGACACTTTAATG
387 AATCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATG
5975846 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCTCCTTTAAGGGGGTGAGTTCTCGAGGTTTG
451 GCTACT-GCAGCAAACCTGTAAAATCTCAAATG-CT-CTTTAAGGGGGTGAGTTCTCGAGGTTTG
5975911 ATGGAGGGATAGGGGGCC-AATATAAGGGCCAAGTACTAGCATCCATCGCACATCATGTGCGCCC
513 AT-GAGGGATAGGGGGCCAAAT-TAAGGGCCAAGTACTAGCATCCATCGCACATCATGTGCGCCC
*
5975975 CCCGCCGCCGCCCCCCGAT-CGCCGAACTC-CAATG
576 ACCGCC-CCGCCCCCCG-TGCGCCGAACTCACAATG
5976009 CCGCGGTCAG
Statistics
Matches: 553, Mismatches: 44, Indels: 26
0.89 0.07 0.04
Matches are distributed among these distances:
710 32 0.06
711 90 0.16
712 37 0.07
713 119 0.22
714 46 0.08
715 64 0.12
716 117 0.21
717 48 0.09
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (710 bp):
GATCCGGTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAATCAGCGGG
CGAGAGGGCGGCCAGGCACTACGCCGACCAGAGAGACGAGATGCGCAAGCCATGGATCGATAGGG
TGGTAGGTGGGTTTAGGCACATCTTCATATTTATGATGCCAATGGCATTTTTTTGGCTTGTAAAT
TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTT
CACGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCACAACGAGTTTTGGTCC
CAAACTTAGTAGACGGGATCCTTGTATTTTTATTGGCATGCAAAAAAAAATTCAGCTAAAAAATC
GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
TGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGAGTTCTCGAGGTTTGATGAGGGA
TAGGGGGCCAAATTAAGGGCCAAGTACTAGCATCCATCGCACATCATGTGCGCCCACCGCCCCGC
CCCCCGTGCGCCGAACTCACAATGAACGGGATACAGGCGCTCACCCGCCAGAGGCCCGCGATGCG
CACCCGGGGAAAAATCGGACACCAGCTACATGCATACCAAGCATACTGTCTGCAACCCAT
Found at i:5977565 original size:26 final size:26
Alignment explanation
Indices: 5977529--5977580 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
5977519 CTTGAATTAG
5977529 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
5977555 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5977581 AATCAGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5978466 original size:26 final size:26
Alignment explanation
Indices: 5978428--5978480 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5978418 GTTGATTTAG
*
5978428 GCATACGGGGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5978454 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5978480 G
1 G
5978481 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:5978876 original size:900 final size:899
Alignment explanation
Indices: 5977124--5995470 Score: 16795
Period size: 900 Copynumber: 20.3 Consensus size: 899
5977114 NNNNNNNNTA
* ** ** *
5977124 AAAAAATCTCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTTTTGCCAT
1 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
5977189 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGC
66 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** * *
5977254 ATGTTGACATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCC
131 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* *
5977319 CGTCTCTTTGGCCGACGTAGTGCCCA--------CCCGCTCATTTCGTCGGTTGGCTTAGGCATA
196 CGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * ** ** * *
5977376 CAGAGTTCATTCCCAGTCCAAGATTTGATTGGA-CGAGGGTTGTGGCAGCAGGATCGACAGCATG
261 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCATG
* * * * * * *
5977440 CAGAGGGGAACCCAGCCGATCCACGGCTTGCGCATCCTGCCCCTCTGGCTGGTTGAGCACCCGTA
326 CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCA
* * * *
5977505 CGCTCGTTTTGTGGCTTGAATTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
391 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * ** *
5977570 TCCCAGTCTAAAATCAGACCGGATCGAGGGTTACGATAGCACATGCTGGGCTCGAGCATGTGTTG
456 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
* * ** * * ** *
5977635 GTGCCGCATTTCTCTTCG-CTGGGGCACTATCACCAGAGCATCGTCGGAGAAATTAACCGGCGGC
521 GTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGC
* **
5977699 ATTGGGGTTCCGACGATC-GGGGGGTCTAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
585 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * **
5977763 ACTTGGCCTTTATATTGGCCCTCTATAACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
650 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
5977828 CATTTCAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGT-TTAGAATGGGGACACCTTTT
715 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTT
* * * * *
5977892 TCAAACGGTCAGAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAA
779 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* *
5977957 AAACACAAGGATAACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCAAAAGAATTTT
844 AAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCAAAA-AATTTT
* * * * *
5978014 AAAAAATCCTGAACCGCAGAAAGTTTCAAAAATCATGGAAAAATAG-AAATGAGTCGTCCTGCCG
1 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT-GAAAAATAGAAAACGAGTCGTCTTGCC-
* *
5978078 TTGAAACTTCACGTGGAAGGCTTGA-GGACCATT-TATGAATTTTACAAGCCATAAAAATGGCA-
64 ATGAAACTTCACGT-GAAGGCTTAAGGGACCATTGTATGAA-TTTACAAGCCATAAAAATGGCAT
* *
5978140 TGGCATGTAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
127 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
*
5978205 ATCCCGTCTCTCTGGCCGACGTAGTGCCCACCGGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
192 ATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * ** * * * *
5978270 CATACGGAGTTCATTCCCTA-TCTAAGATCATACCAGATTGAGGATTCCGGCAGCAAGATCGGTA
257 CATACGGAGTTCATTCCC-AGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * *
5978334 GCATGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCAC
321 GCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
* * * *
5978399 CCGCACACTCGTTTCGTGGGTTGATTTAGGCATACGGGGTTCATTCCCAATCTAAGCATACGGAG
386 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * * *
5978464 TTCATTCCCAATCTAAGATCGGACCGGACCAAGGGTTGCGGTAGCATATGCTGGGCTCAGGCATG
451 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* *
5978529 TGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGAAGAACCTGACCGC
516 TGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGG
* ** *
5978594 CAGCATTGGGGTTCCGACGATCGGACGGGCCGGGGGGGTGTGTGCACATGATGTGCGATGGGTGC
581 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
5978659 TGGCACTTGTCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
646 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
5978724 AGAGCATTTGAGATTTTACAGGTTTGGTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTT
711 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
5978789 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
776 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *** * * *
5978854 AAAAAATACAAGGATCACGTCTACCAAGTAACAGAGGGCCAAAACTCGTTCTGAAAAAGTTTT
841 CAAAAATACAAGGATCACGTCTACCAAGT---TTTGGGCCAAAACTCCTTC-CAAAAAATTTT
** * *
5978917 AAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTCAAAAATAGAAAACGAGTCGTCTTGCCAT
1 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
5978982 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
66 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
5979047 ATGTAGACATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCC
131 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
*
5979112 CGTCTCTTTGGCCGACGTAGT--------GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
196 CGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* ** * * * * *
5979169 CAGG-GTTCATTCCCAGTCCAAGATTC-GATTGGACCGAGGGTTGTGGTAGCAAGATTGACAGCA
261 C-GGAGTTCATTCCCAGTCTAAGA-TCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* * * * * * *
5979232 TGCACAGGGGGACCCGACCGATCCACGGCTTGCGCATCCTGCCCCTCTGGCTGGTTGAACACCCG
324 TGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCG
* * * * *
5979297 TACGCTCGTTTTGTGGCTTGAATTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
389 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * * **
5979362 ATTCCCAGTATAAAATCAGACCGGATCGAGGGTTACGATAGCACATGCTGGGCTCGGGCATGTGT
454 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGT
* ** * ** * *
5979427 TGGTGCCGCATTTCTCTTCG-CTGGGGCACCATCACCGGAGCATCGTCGGAGAAATTAACCGACG
519 TGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCG
* * * *
5979491 GCATTAGGGTT-CGACGATCGGGGGGTCC-AGGGGCTGTGCGCACATGATGTGCGATGGGTGCTG
583 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* **
5979554 GTACTTGGCCCTTATATTGGCCCTCTATAACTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
648 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * * * *
5979619 AGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTTTGGAATGGGGACACCTTT
713 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * * * * *
5979684 TTCAAACGGTCAGAAAATCTTGTACCCGTT-GAGTTTTTAGCTGAATTTTTTTATGCACGCGAAA
778 TTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
5979748 AAAAATACAAGGATAATGTCTACCAAGTTTTGGGCCAAAACTCCTTCCAAAAGAATTTT
842 AAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCAAAA-AATTTT
* *
5979807 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCAT
1 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
5979872 GAAACTTCACGTGAAGGCTTGAGGGACCA-TGTATGAATTTACAAGCCATAAAAATGGCATTGGC
66 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
5979936 ACGTTAGAAATATGTATGATGTGCCTAAACCCACC-ACCACCCTATCGATCCACGGCTTGCGCAT
131 ATG-CAGAAATATG-AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
*
5980000 CCCGTCTCTCTGGCC-AGCGTAGTGCCCACCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
194 CCCGTCTCTCTGGCCGA-CGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * *
5980064 ATACGGAGTTCATTCCCTA-TCTAAGATCATACCCGACTGAGGATT-CTGGCAGCAAGATCGGTA
258 ATACGGAGTTCATTCCC-AGTCTAAGATCAGACCGGACCGAGGGTTGC-GGCAGCAGGATCGGCA
* * * *
5980127 GCACGCAGAGGGGGA-CCGGTCGATCCCCGGCTTGCACATCCCACCCCTCTGGCCGGC-GAAGCA
321 GCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG-AGCA
* * * *
5980190 CCCGCACGCTCGTTTCGTGGGTTGATTTAGGCATACGGAGTTCATTCCCATTCTAAGGATACAGA
385 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* ** * * *
5980255 GTTCATTCCCAATCTAAGATTGGTCCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCAGGCAT
450 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* ** *
5980320 GTGTTGGTGCCGCATTTTTCTTCGTCGGGGAACCATCACCGGAGCATCATCGAAGAACCTGACCG
515 GTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCG
* * ** *
5980385 TCGGCATTGGGGTTCGGACGATCGGACGGGCCGGGGGGGGTGTGTGCACATGATGTGCGATGGGT
580 GCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
5980450 GCTGGCACTTGGCCCTTATGTTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACACCCCCTT
644 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
5980515 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACAC
709 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
5980580 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGGCATGCC
774 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
** * * * *
5980645 AACAAAAATACAAGGATCATATCTACCAAGTTTGGGGCAAAAACTCCTACTGAAAAAATTTT
839 AACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTC-CAAAAAATTTT
* * *
5980707 AAAAAATCCAGAACCG-CAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
1 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
5980771 GAAACTTCACGTGAATGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGC
66 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
5980836 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGGTCCACGGCTTGCGCTTCC
131 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * *
5980901 CATCTCTCTGGCCGGCGTAGTGCCCACCCGCCTGCCCGTTCGTTTCATCGGTTGGCTTAGGCATA
196 CGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * *
5980966 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGTAGGATCGACAGCATG
261 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCATG
* ** * * *
5981031 CAAAGGGGGACCCGATCAATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCACCCGCA
326 CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCA
* * * *
5981096 CGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCGT
391 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* ** * *
5981161 TCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGTTG
456 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
** * * *
5981226 GTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAAAACCTGTCCGGCGGCA
521 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCA
* *
5981291 TTGGGGTTCCGACAATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
586 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
5981356 CTTGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
651 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
5981421 ATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
716 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
5981486 AAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAA
781 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * * * **
5981551 ATACAAGGATCACATCTACCAAGTTTGGGGCAAAAACGCCTTCTGAAAAAATTAA
846 ATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTC-CAAAAAATTTT
*
5981606 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAATCGTCTTGCCAT
1 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
5981671 GAAACTTCACGTGAATGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGC
66 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * * *
5981736 ACGTAGAAATATGAAGATGTGTCTAAACCTACCTACCACCCTATCGATCTACGACTTGCGCATCC
131 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
** * *
5981801 CGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCTGCCCGCTCATTTCGTCGGTTGGCTTAGG
196 CGTCTCTCTGGCCGACGTAGTGCCCACCCG--C-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGG
** * * ** * ** *
5981866 CATACAAAGTTCATTCCCAATCTAAGATCGGATTGGACAGAGGGTTGCGGCTTCAGGATCGACAG
257 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* ** *
5981931 CATGCAGAGGGGGACCTGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCACC
322 CATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACC
* * *
5981996 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGT
387 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * *
5982061 TCATTCCCAGTCTATGCATATGGAGTTCATTCCCAGTCTAAGAGCAAATCAGATCGAGGGTTACA
452 TCATTCCCAG----T-C-TA---AG---------A-TC--AGA-C----CGGACCGAGGGTTGCG
* * * *
5982126 ACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCAGGGCACCATTGTTG
491 GCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG
* * * * * *
5982191 GAGCATCGTCGGAGAACCTGATCGACGGCATTAGGGTTTCGACGATCGGGGGGGCCGGGAGGGTG
556 GAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTG
* * *
5982256 TGCGCACATGATGTACGTTGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
621 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
5982321 ACCTTGAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
686 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
5982386 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACGTCGAGTTTTT
751 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * *
5982451 AACTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCTAGTTTGGGGCCAAA
816 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAA
* *
5982516 AGTCCTTCCGAAAAATTTTT
881 ACTCCTTCC-AAAAAATTTT
* ** * **
5982536 AAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTAATCTTGCCAT
1 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
5982601 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
66 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
5982666 ATGCAGAAATATGAAGATGTACCTAAGCCCACCTACCACCCTATCGATCCACGGCTTGCGCATTC
131 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* *
5982731 CGTCTCTCTGGCCGGCGTAGTG----CTCGCCCGCCCGCTCG-TTCGTCGGTTGGCTTAAGGCAT
196 CGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT-AGGCAT
** **
5982791 ACGGAGTTCATTCCCAGTCTATGATAGGATCACGAATGAGATAGGACCAGAATAAGGGTTGCGAT
260 ACGGAGTTCATTCCCAGTC--T-A-A-GAT--C-----AGACCGGACC-G----AGGGTTGCGGC
* * * *
5982856 AGTAGGAT-TGCAGCATGTAGAGGGGGACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
308 AGCAGGATCGGCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * *
5982919 GCCGACTGAGCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTG
373 GCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
** * *
5982984 TAAGCATACGGAGTTCATTCCCTAGTCTAAGATTGGA-CGGA-TGAGGGTTGCTGCAGCACATGC
438 TAAGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGC
* *
5983047 TGGGCTCGGGCATGTGCTGGTGCCTCA-TTTTCTTCGTCGGGGCCACCATCGTC-G-G----A--
502 TGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGG-CACCATCGTCGGAGCATCATC
5983103 -GA-AACCTGACC-GCGGCATTGGGGTT-CGATCGATCGGGGGGGCCGGGGGGGTGTGCGCACAT
566 GGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACAT
*
5983164 GATGTGCGATGGGTGCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTTGAGA
630 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
5983227 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
695 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
5983292 TGAAAT-GGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACAC-TC-AG-TTTTAGCTGAATT
760 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
5983352 TTTTT-TGCATG-CAACAAAAATACAAGGATCATGTCTACCAAGTTTGAGGGCCAAAAATCCTTT
825 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-TGGGCCAAAACTCC-TT
*
5983415 CGAAAAAATTTT
888 CCAAAAAATTTT
* *
5983427 AAAAAATCTCGAA-CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
1 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
5983491 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
66 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*
5983556 ATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
131 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
5983621 CGTCTCTCTAGTCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTCGGCATA
196 CGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* ** * * * ** * *
5983686 CGGAGTTCATTCTCAGTCTAAGATCAGACAAGATCGAGGGTAGCAGCAGCAGGATCATCAACACG
261 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCATG
* * * * * *
5983751 CAGAGGGAGACCCCGCCGAT-CCCGGCTTGTGCATCCCGCCGCTCTGGCCAGCTGAGCACCCGTA
326 CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCA
* * * * *
5983815 CGCTCGTTTCGTGTGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAACCATATGGAGTTCAT
391 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* ** *
5983880 TCCCAGTCTAAGATCGGA-TAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGTTG
456 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
* * * * * * *
5983944 GTGCCGCATTTTTCCTCATCGGGGCACCATTGTCGGTGTATCGTC-GAGGAACCTGACCGACGGC
521 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGA-GAACCTGACCGGCGGC
* * ** *
5984008 ATTGGGGTTCTGACGATCGAGGGGG-TTGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGT
585 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
5984072 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
650 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
5984137 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACAATTTTTT
715 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
5984202 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAACAAA
780 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
*
5984267 AATACAAGGATCATGTCTACCAAG-TTTGGGCCCAAAACTCCTTCCGAAAAAATTTT
845 AATACAAGGATCACGTCTACCAAGTTTTGGG-CCAAAACTCCTTCC-AAAAAATTTT
* * *
5984323 AGAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCCTGCCA
1 A-AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
5984388 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
65 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*** * *
5984453 CACATAGAAATCTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATC
130 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
** * * * * * * * *
5984518 AAGTCTCTCTGGCCGGCACAGTGGCCGCCCGCCCACCCGCTCACTCGTTTCATTGGTTGGCTTAG
195 CCGTCTCTCTGGCC-G-AC-GTAG-TGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
** * * *
5984583 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAATGGACCGAGGGTTGTGGCAGTAGGATTGGCA
256 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * ** ** *
5984648 GCACGTAGAGGGGGACCCGGCTGATCCCTAGCTTGCGCATCCTACCCCTCTGGCCGACTGAGCAC
321 GCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
* *
5984713 CCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT----A-A---A-
386 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* ** * * *
5984769 ---ATT----G-----GACCAGACC--A---ATCGTTGCGGTAGCACATGCTGGGCTCGAGCTTG
451 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * *
5984817 TGTTGGTGCCGCTTTTTTCTTTGTCGGGGTACCA---TC---G---C-T-GGAGAACCTGACTGG
516 TGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGG
* * * * *
5984871 TGGCATTAGGGTTCCGACGATCGAGGGGGCCGGAGGGGTGTGCGCACATGATGTGGGATGGGTGC
581 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
5984936 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTCAA
646 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
5985001 AGAGCAGTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAATTGGGGACACTT
711 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
5985066 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAA
776 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
5985130 CAAAAATACAGGGATCACGTCTACC-AGGTTTGTGCCAAAACTCCTTCCAAAAATATTTT
841 CAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCAAAAA-ATTTT
* * * * *
5985189 AAAAAATCTCGAGCCGTAAAATGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCATCTTGCCAT
1 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
5985254 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
66 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
5985319 ATGCAGAGATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGAT--ATCTAGCTTGCGCAT
131 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-C-GGCTTGCGCAT
*
5985382 CCCGTCTCTCTGGCCGACGTAGTGCCCA----CCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCA
194 CCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
5985443 TACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGTAGCAGGATTGGCAGCA
259 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* ** * * * *
5985508 TGTAGAGGGGGACCCCACCGATCCCCGGCTTGTGCATCCCGCCCCTCT-GCTCAGCTGAACACCT
324 TGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC-CGGCTGAGCACCC
* * * * * * *
5985572 GCATGCTTGATTCGTGGGTTGACTTAGGTATATGGAGTTGATTCCCAGTCTAAGCAGACGGAGTT
388 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * * *
5985637 CATTCCCAGTCTAAGATCAGGCCTGACCGAGGGTTGTGACAGCACATGCTGGGCTCAGTCATGTG
453 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * * * *
5985702 TTGGTGCTGTATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACCGGAGAACCTGACCAGCG
518 TTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCG
** * ** *
5985767 GCATTAAGGTTCCGGCGATC-GGGGGG-CTAGGGGGTAG-GCGCACATGATGTGCGATGGGTACT
583 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGT-GTGCGCACATGATGTGCGATGGGTGCT
* * *
5985829 GGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACTCCCTCTTAAA
647 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
5985894 GAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTT
712 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
5985959 TTTCAAATGGTCACAAAATCTTGTACATTTCGAGTGTTTAGCTGAATTTTTTT-TCCATGCCAAC
777 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * *
5986023 AAAAATACAAGGATCACGTCTACCATG-TTTGGGACGAAAACTCCTTTCAAAAAAATTTT
842 AAAAATACAAGGATCACGTCTACCAAGTTTTGGG-CCAAAACTCC-TTCCAAAAAATTTT
* * * * *** *
5986082 CAAAAATCTCGAATCGTAAAAAGTTTTAAAAAAGGTGAAAAATAGAAAACGAGTCGTTTTGCCAT
1 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
5986147 TAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
66 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * * *
5986212 ACGCAGAGATATGAATATGTGCCTAAACTCACCTACCACCCTATCGATCTATGGCTTGCGCATCC
131 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * ** * * *
5986277 CGTCTCTCTGGTCGGCGTAGTGCCTGCCCGCCCGCCCGTTTGTTTCATCGGTTGGCTTAGGCATA
196 CGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * * ** *
5986342 CGGAG-TCAGTCCTAGTGTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAAGATTGATAGTATG
261 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCATG
* * ** * * * * * * *
5986406 CAAAGAGGGACCCGATCAAGCCCCGGCTTACGCATCCCACCCCTCTGGTCGGCTAAGCACCTGCA
326 CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCA
* *
5986471 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
391 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * *
5986536 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAACACATGCTGGGCTCAGGCATGTGCTG
456 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
* * * * *
5986601 GTGTCGCATTTTTCTTTGTC--GG----A--GT--G-CCATCATCGGAGAACCTAACCGGCGGTA
521 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCA
* * * * * * *
5986655 TTGTGGTTTCGATGATCGGGGGGGCGAGGGGGGGTGTGCGCACCTGATGTGTGATGGGTGATGGT
586 TTGGGGTTCCGACGATCGGGGGGGC-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
** *** *** * **** ** * ** *** *
5986720 ACTTGGCCCTTATATTATCAGACTGGACC-GAGGGTTACGGC-AGCA-T-ATGCTGGGC-T--CG
650 ACTTGGCCCTTATATTGGCCCCCTATCCCTCA-TCAAACCTCGAGAACTCACAC-CCCCTTAAAG
* * * * * * * * ** ** ** *** **
5986778 GGCATGTGCTGGTGTCACA-TTTTTCTTTGTCGGGGCGCCATCGTCGGAGAACCTG-ACCGGCGG
713 AGCATTTG-AGATTTTACAGGTTTGC--TG-CCAGTAGCCAT--T-AAAGTGTCTGAAATGG-GG
* ** * ** ***** ** * * * *
5986841 -TA-TTGTGGTTTCGGCGATCGGGGGGGCTGAGGGGGGTGTGCGCACCT-GA-TGTGT-GATG--
770 ACACTT-T--TTTC--AAAT-----GGTCACA-AAATCT-TGTACACTTCGAGTTTTTAGCTGAA
** ** * * * * * * * **** * * * *** ** *
5986899 GGTGCTGGTACTTGGCC--CTTATATTGGCCCCCTATC-CCTC-ATCAAACCTCAAGAACTCACA
823 TTTTTTTGTGCAT-GCCAAC-AAAAAT--ACAAGGATCACGTCTA-CCAA-GTTTTGGGC-CAAA
* * * *
5986960 CCCCCTT--AAAGAGCATTTC
881 ACTCCTTCCAAA-A-AATTTT
* *** ** ** * ** * * * * **** ***** ***
5986979 AGATTTTACAGGTTTGCTGCCAATAG--CCATTAAAGTCTCTGAAATGGGGACAATTTTTTCAAA
1 AAAAAAT-CCCG--AACCGTAAAAAGTTTCA--AAAATC-ATGAAAAATAGA-AAACGAGTCGTC
* * ** * ** * * * *
5987042 TGGTCAAAAAATCTTGTACACTTCG-AGTTTTTAGCTGA--ATTGT-T---TTGTGCATGCCA-A
59 TTGCCATGAAA-C-T-T-CACGT-GAAGGCTTAAG-GGACCATTGTATGAATT-TACAAGCCATA
** * ** ** * * * * **** *
5987099 CAAAATTACA-AGG-AT-CATG-TCTACCAAGTTTGGGGCC-AAA-ACACCTTCCGAAAAAAT-T
117 -AAAATGGCATTGGCATGCA-GAAATATGAAG-AT-GTGCCTAAACCCACCTACC-ACCCTATCG
* *** * * **** * ****** * * **** * ** ** * *
5987157 TTCACAAATCTCGAACCGTAAAAAGTTTCAAAAATC-ATGAAAAAACGAGTCGTCTTGCCATGAA
177 ATC-CACGGCTTG---CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCG-CCCGCC-CG-C
* * ** * * ** * * * *
5987221 AC--TTCAT-GTGAAGGCTTAAAGGACCAT-TGTA-TGAATTTACAAGCCATAA-A--A-A-TGG
235 TCGTTTCGTCG-GTTGGCTT--AGG--CATACGGAGTTCA-TTCCCAGTC-TAAGATCAGACCGG
*** ** * * ** * ** ****** * *** * ** *
5987276 -CATTGGCATGCAGAAATATGAAGA-CGTGCCTA-AACCCA-CCTACCATCCTATCGAACTACAG
293 ACCGAGGGTTGCGGCAGCA-G--GATCG-G-C-AGCATGCAGAGGGGGACCCGGCCGATCCCCGG
* * * * * * * * *
5987337 CTTGTGCATCCCGTCTCTCTGGTCGACGTAGTGCCTGCCCGCCCGTCCGTTCGTTTCGTCGGTTG
352 CTTGCGCATCCCGCCCCTCTGGCCGGC-T-GAG-C-ACCCGCACG--C--TCGTTTCGTGGGTTG
* * * *
5987402 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAG-ATA-GGACTGGACTGAGGGTTGGGACACCAG
409 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA---G-TTCA---TT----C-CCAG
* * * * **** * * * * *
5987465 GC--AGAGGCAGACCCGACCAATCCCTGACTTGTGCATC-C-CGCCT---CTCTGGC-CG-GCTG
462 TCTAAGA-TCAGACCGGACCGAGGGTTG-C--G-GCAGCACATG-CTGGGCTCGGGCATGTGTTG
* *** * * * * ***
5987521 AGTACCCGCA-CACTCGTATC-TTGGGTTG-ACTTAGGCATACGGAGTTCATTC-TCAGTCTAAG
521 -GT-GCCGCATTTTTC-T-TCGTCGGG--GCAC-CA-TCGT-CGGAG--CA-TCATC-GGAGAA-
* * * * *** * * ** ** * * * *
5987582 CAT-A-TGGAGTTCATTCCCAG-T-CTAAGATCGGACCGAACC-GAGGGTTGCGACAGCACATGC
572 CCTGACCGGCG-GCATT-GGGGTTCCGACGATCGG-GGGGGCCGGGGGGGTGTG-C-GCACATGA
* *** * *** * ** * * * * *
5987642 TGGGCTCGGGCACGTGTTGGTGCAGCATT-TTTCTTCGT-CGGGGCACC-AT-CGTCGGAGC-AT
632 TGTGCGATGG---GTGCTGGT--A-C-TTGGCCCTT-ATATTGGCCCCCTATCCCTC--ATCAAA
* * ** * ** ** * * * ****** * *
5987702 CGCTGGAGAACCTGATCGACGACATTAGGGTTTCGGTGATCGGGGGCCGGCGGGTGTGC-GCACA
687 C-CTCGAGAA-CTCA-C-ACCCCCTTAAAG-AGC-AT--TTGAGATTTTACAGGTTTGCTGC-CA
*** * * * ** *** * * ** ** *
5987766 -T-GATGTGTGATGGGTGCTGGTACCTGG-CCCTTATATTGGCCCCCTATCCCTCATC-AAACCT
743 GTAGCCAT-TAAAGTGT-CTGAAATGGGGACACTT-T-TT----TCAAAT-GGTCA-CAAAATCT
* * * * * *** * * * ** *
5987827 CGAAAAC-TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT-TGC-TACCAGCAGCCATT
798 TGTACACTTC-GA----GTT-TTTAGC---TGA-ATTTT----TTTGTGCATGCCAACA-AAAAT
* * * *** * ** ** * * *
5987889 A-AAGTGTTTGAAATGGGGA-C-ACTTTT--TTC-AAA-T-GGT-CACAATATCTT
848 ACAAG-G-AT--CACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCAAAAAATTTT
** * * * **** * * ***** ** *
5987936 GTACACT-TCGAGTTTTTAGCTGAATGTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTA-
1 AAAAAATCCCGA-ACCGTA---AAAAG-TTTCAAAAAT--CATGAAAAATAGAA--A--ACG-AG
** * * * * ** * **
5987999 TACCAAGT-TTGGGGCCA--AAACTCCTTC-CGAAAAAAGTTTAAAGAATCCCAAACCGCAAAAA
54 T--C--GTCTT---GCCATGAAA---CTTCACG-TGAAGGCTTAAGGGA--CC--ATTGTATGAA
* ** ** * * * * *
5988060 GTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTC-TCGCCATGAAACT-TCACATGAAG-GCT
104 -TTT-ACAAGCCAT-AAAAAT----GGC-A-TTGGCAT-G-CA-GAAA-TATGA-A-GATGTGCC
* ** ** *** ** * * * * ***
5988122 TAAGAGACCATTGTATGAATTTA-CAAGCCATAAAAATGGCATTG-GCATGCAGAAATATGAAGA
154 TAA-A-CCCA-CCTACCACCCTATC--G--AT--CCACGGC-TTGCGCATCCCG---TCT--CTC
* ** * * * * **
5988185 TGTGCCTAAACCCACCT-ACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTC-TCTGGCCGG
204 TG-GCC--GACGTA-GTGCCCACCC----G--CC-C-GC--CCGC-T--CGTTTCGTC-GGTTGG
* * * ** ** * * * * ** * *
5988248 CGTAGTGCCCGCCCGTCCGCCCGCTTGTTTCATCTGT-T-GGCAT-AG-GCATACGGA-GTTCAT
251 CTTA--G---G--CATACG-GAG-TTCATTC-CCAGTCTAAG-ATCAGACCGGACCGAGGGT--T
* * * * * * * * *
5988308 TC-CCAGTCTAAGATTGGACCGAACTG-ATGGTTGCGGCAGCAAGATCGACAGCACGTAGATGGG
303 GCGGCAG-C-AGGATCGG-CAGCA-TGCA--G-AG-GG--G---GA-C-CCGGC-C---GAT---
* ** ** ** * *
5988371 GACCCGGCCGATCCCCGGCTTACGCATCCAGCCCCTCTGGTCGACTGAGCACCCGCACGCTCGTT
346 -CCCCGG-C--T-TGCGCATCCCGC-------CCCTCTGGCCGGCTGAGCACCCGCACGCTCGTT
* *
5988436 TCGTGGGTTGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTC
399 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * * * *
5988501 TCAGATCAGACCGAACCGAGGGTTGTGGCAGCACTTGTTGGGCTCGGGCATGTGTTGGTGCCACA
464 TAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCA
* * ** * *
5988566 TTTTTCTTCGCCAGGGCACCATCGTCGGAGCATGGTCAGAGAACCTGACCGGCGGCAATGGGGTT
529 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTT
* *
5988631 CCGACGATCGGGGGGACCGGGGGGTGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGC
594 CCGACGATCGGGGGGGCC-GGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
5988696 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTACACCCCCTTAAAGAGCATTTGA
657 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
5988761 GATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
722 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
*
5988826 TCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
787 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * *
5988891 CGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTG
852 GGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCC-AAAAAATTTT
* * **
5988940 AAAAAATCCCGAGCCATAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
1 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
5989005 GAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
66 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** * *
5989070 ACACAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
131 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
*
5989135 CGTCTCTCTGGCCGACGTAGT----ACCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATA
196 CGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * *
5989196 CGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGTAGCAAGATCGGTAGCA--
261 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCATG
* * * * ** * *
5989259 CAAAAGGGGGACCTGGTCGATCCCCAGCTTGCGCATCCTACCCTTCTGGTCGGCTGAGCACCCGC
326 C-AGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGC
* *
5989324 ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAG--T---C-TA---AG---A
390 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * **
5989377 -T--CAG----A-A-C--A---GACCGAGGATTGCAGCAGCACTTGCTGGGCTCGATCATGTGTT
455 TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTT
* ** * *
5989428 GGTGTCGCATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCGTCGGAGAACCTGACCGGCGGC
520 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGC
* * * **
5989493 ATTAGGGGTTTCGACGATCGGGGGGGGCGGGGGGGTGTGCGCACATGATGTGTGATGGGCACTGG
585 ATT-GGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
5989558 TACTTGG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
649 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
5989622 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
714 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTT
* * * *
5989687 TTCAAATGGTCACAAAATCTTGTATACTTCAAGTTTTTAGCTGAATATTTTTATGCATGCCAACA
778 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * *
5989752 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTA
843 AAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCC-AAAAAATTTT
* ** * * * * **
5989810 AAAAAATCCCGAGCCAG-AAAAAGTTTTGAAAATCGTGAAAAATCGAAAATGAGTCATCTCACCA
1 AAAAAATCCCGAACC-GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * * *
5989874 TGAAACTTCACGGGAAAGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTTG
65 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
5989939 CAGGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
130 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * ** * * * * *
5990004 CTGTCTCTCTGGTCGGTGTAATGCCCGCCTGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGTAT
195 CCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
** * ** ** * * ** *
5990069 ACGGAGTTCATTCCCAGTCTAAGATTGGGCCAAACCGAGGGTTGCTACAACAGGATTGATAGCAC
260 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAT
* ** * * * *
5990134 GTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCAGCCCCTCTGGTCGGCTAAGCACCCGT
325 GCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGC
*
5990199 ACGCTCATTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
390 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * *
5990263 TTCCCAGTCTCAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGTTGGGCTCGGGCATGTGTT
455 TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTT
* * * *
5990328 GGTGCCACATTTTTCTTCGTCGGGGCACCA---TC---G---C--CGGACAACCTGACTGGCGGG
520 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGC
* * * *
5990382 ATTTGGGTTCCGACGATCGGGGGGGTCGGGGGGTGGTGCGCGCACATGATGGGCGATGGGTGCTG
585 ATTGGGGTTCCGACGATCGGGGGGG-CCGGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
5990447 GTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACACACACCCCCTTAAAG
648 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * * *
5990512 AGCATTTAAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGACACTTTT
713 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
5990577 TTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAA
778 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * *
5990642 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCTGAAAAATTTTT
843 AAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTC-CAAAAAATTTT
5990700 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT--TG-AAAATAGAAAACGAGTCGTCTTGCCAT
1 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
5990762 GAAACTTCGCGTGAGGGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
66 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
5990827 ATGCAGAAATATGAAGATGTGCCTAAAACCACCTACCACCCTATCGATCTACGGCTTGCGCATCC
131 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * **
5990892 CGTCTCTCTAGCCGACGTTGTGCCCGCCCACCTGCCCGCTTGCTCGTTTCGTCGGTTGGCTTAGG
196 CGTCTCTCTGGCCGACGTAGT----GCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * ** * ** * *
5990957 CATACGGAGTTCAATCCCGGTCTAAGATCAGACCGAACTAAGGGTTACAACAGCATGATTGGCAG
257 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* ** * * *
5991022 CATACAGAGGGGGACCCGGTTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGTTGAGTACC
322 CATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACC
** * *
5991087 CGCACGCTCGTTTCGTGGGTCAACTTCGGCATACGGAGTTCATTCCCTGTCTAAGCATACGGAGT
387 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* ** * * * *
5991152 TCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTGGCGCATGTTGGGCTTGGGTATGT
452 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * * * ** ***
5991217 GTTGGTGCCGCATTTTTGTTCGTCAGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACTAAC
517 GTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGC
* * * * *
5991282 GACATTTGGGTTTCGACGATCGGGGGGGCC-GGGGCGTGTGCGCACATGATGTGTGATGGGTGCT
582 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * *
5991346 GGTACTTGGCTCTTATATTGGGCCCCTTTCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
647 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
5991411 GAGCATTTGAGATTTTACAGTTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAATGTGGACACTT
712 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGACACTT
* * *
5991476 TTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCCGAATTTTTTTGTGCATGGCAA
776 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * * *
5991541 AAAAAATACAAGGATCAAGTCTACCAAGTTTAGGGCCAAAATTACTTCCAAAAAAATTTT
841 CAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCC-AAAAAATTTT
*
5991601 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
1 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
5991666 GAAACTTCGCGTGAGGGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
66 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*
5991731 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCC
131 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
*
5991796 CGTCTCTCTGGTCGACGTAGTGCCCACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
196 CGTCTCTCTGGCCGACGTAGTGCCCA----CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * *
5991861 CATATGGAGTTCATTCCCAGTCTAAGATCCA-ACCGGATCGAGGGTTGCGGCAGCAGGATCGGTA
257 CATACGGAGTTCATTCCCAGTCTAAGAT-CAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
* ** *
5991925 GCATGCAGAGGGGGACCCGGCCGATCCCTGGCTTATGCATCCCGCCCCTCTGGCCGGCTAAGCAC
321 GCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
** * *
5991990 TTGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAG
386 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* ** * * *
5992055 TTCATTCCCAGTCTAAGGTCAGAATGGACCGAGGGTTACGACAGCACATGCTGGGCTCAGGCATG
451 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* ** *
5992120 TGTTGGTGCCACATTTTTCTTCACCGGGGCACCA---TC---G-----TCGGAGAACCTGACCGA
516 TGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGG
* * * * * * *
5992174 CGACATTAGGGTTCTGATGATCGGGGGGGCTGGGGGGTTGTGCGCACAGGATGTGCGATGGGTGC
581 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
5992239 AGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
646 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
5992304 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAGTGTTTGAAATGGGGACACTT
711 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * * *
5992368 TTTTCAAATGGTCACAAAAACTTGTACACTTCAAGTTTTTAGCTGAACTTTTTTATGCTTGCCAA
776 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
5992433 TAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTCCGAAAAAATTTT
841 CAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCC-AAAAAATTTT
* * *
5992493 AAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
1 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* ** * *
5992558 GAAGCTTCACGTGAAGGCTTAAGGGACCATTAAATGAATTTACAAACCATAAAAATGGTATTGGC
66 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
5992623 ACGCTGAAATATGAAGATGTGCCTAAACCCCCCAACCACCCTATCGATCCACGGCTTGCGCATCC
131 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
5992688 CGTCTCTCTGGCC-AGCGTAGTGCCCGCCCGCCCACCCGCCCTCATTTCGTCAGTTGGCTTAGGC
196 CGTCTCTCTGGCCGA-CGTAGTGCCCACCCGCCCGCCCG--CTCGTTTCGTCGGTTGGCTTAGGC
* * * * * *
5992752 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGTAGTAGGATC-ACAGC
258 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* ** * * *
5992816 ACGCAGAGGGGGACCCAACCTATCCCCGGCTTGCGCAGCCCGCCCCTCTGGCCGGTTGAGCACCC
323 ATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
* * * ** * *
5992881 ACATGCTCATTTCGTGGGTTGACTTAGGCATACAAAATTCATTCCTAGTCTAAGCATACGGAGTT
388 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * *** * ** *
5992946 CATTCCTAGCCTAAGATCAGACCAGTTTGAAGGTTGCGGCAGCACACACTGGCCTCGGGCATGTG
453 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * ** * * *
5993011 TTGCTACCGCATTTTTCTTCACCGAGG---CATCGTC---G-----TCGGTGAACCTGACCGACG
518 TTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCG
* * ** * *
5993065 GCATTAGGGTTCCGACAATCAAGGGGGCCGGGGGGGGTGTGCACGCATGATGTGCGATGGGTGCT
583 GCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
5993130 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAACCCCCTTAAA
647 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
5993195 AAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
712 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
5993260 TTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGATAAATTTTTTTGTGCATGCC-AC
777 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
*
5993324 AAAAAATACAAGGATCACGTCTACCAAG-TTTGGAGCCAAAACTCCTTCTGAAAAAATTTT
842 -AAAAATACAAGGATCACGTCTACCAAGTTTTGG-GCCAAAACTCCTTC-CAAAAAATTTT
* * * *
5993384 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCATC-T----T
1 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
5993444 G------CACGTGACGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
66 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * *
5993503 ACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGCATCC
131 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * ** *
5993568 CGTCTCTCTGGCCGGCGTAGT--------GCTCGCCCATTCATTTCGTCGGTTGGCTTAGGCATA
196 CGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * * * * *
5993625 CGGAGTTCATTCCCAGTTTAAGATCGGATCAGACTGAGGGTTGTGGTAGCAAGATCGGCAGCACG
261 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCATG
* * * * * *
5993690 CGGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACTCTCA
326 CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCA
*
5993755 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTACAT
391 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * *
5993820 TCCCAGTGTAAGATCGGACCGGACCGAGGGTTGTGAG-AGCACATGCTGGGCTCGGGCATGTGTT
456 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCG-GCAGCACATGCTGGGCTCGGGCATGTGTT
* * * * * * *
5993884 GGTGCCACATTTTTCTTTGTTGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGATCGGGGGT
520 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGC
** * * * * *
5993949 ATTACGGTTTCGGCGATCGGGGGGGCCGGCGGGGTGGGCGCACATGATGTGCGATGGGTGCAGGT
585 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
5994014 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCTCTTAAAGAG
650 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
5994079 CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTT
715 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
5994144 CAAATGGTCACAAAATCTTGTACAATTCGAGTTCTTAGCTAAATTTTTTTTTGCATGCCAACAAA
780 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * *
5994209 AATACAAGGATCACGTGTACCAATTTTTGGACCAAAACTCCTTCTGAAAAAATTTT
845 AATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTC-CAAAAAATTTT
** * * * *
5994265 AAAAAATCTTGAATCGCAGAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
1 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * * *
5994330 GAAACTTCATGTGAAGGCTTAATGGATCATTGTATGAATTTACAAGCAATAAAAATGGCATTGCA
66 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA-T---
* * *
5994395 CACAAAAATGGCATGCAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCTGTTGATCCACG
127 --------TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
5994460 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCTCCCACTCGCCCGCTCGTTTCGTCGGTT
184 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTT
* ** *
5994525 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATTGGACTGAGGGTT------GC-GG
249 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGG
* * * * * *
5994583 -T----AGCATGCAGAGAGGGACCCGACCGATCCCCGACTTGC-CATCTCGCCCCTCTTGCCGGT
314 ATCGGCAGCATGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
5994642 TGAGCACCTGCACGCTCGTTTCATGGGTCGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
379 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * *
5994707 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCATATGCTGGGCTT
444 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * **
5994772 GGGCATGTGTTGGTGCCGC-TTTATTCTTCGTCAGGGCACCATCGCCGAAGCATCGCCGGAGAAC
509 GGGCATGTGTTGGTGCCGCATTT-TTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAAC
* * ** * *
5994836 CTGATCGGTGGCATTGGGGTTTTGACGATCGAGGGGGCC-GGGGGGTGTGCGCACATTATGTGCG
573 CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
* *
5994900 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTAACCCTCATCAAACCTCGAGAACTCACAC
638 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * * *
5994965 CCCCTTAAAGAGCATTTTAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTCTCTGAAATCG
703 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
5995030 GGACACTTCTTTCAACTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTG
768 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * *
5995095 CATGCCAAAAAAAATACAAGGATCACATCTTCCAAG-TTTGTGCCCAAAACTCCTACCGAAAAAA
833 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTG-GGCCAAAACTCCTTCC-AAAAAA
**
5995159 ACTT
896 TTTT
** * * *
5995163 AAAAAATCCCGAACCACAAAAAGTTTCGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCGT
1 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
5995228 GAAACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTTACTAGCCATAAAAATGGCATTGGA
66 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
5995293 ATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTTCGCATCC
131 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * *
5995358 CGTCTTTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCACCAGCTCATTTTGTCGGTTGGCTTAGG
196 CGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCG--C-CC-GCTCGTTTCGTCGGTTGGCTTAGG
* * * *
5995423 CATACGCAATTCATTCCCAGTCTAAGATCAAATCAGGACCGAGGGTTG
257 CATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGGACCGAGGGTTG
5995471 TGGTAGCACA
Statistics
Matches: 14314, Mismatches: 2389, Indels: 1506
0.79 0.13 0.08
Matches are distributed among these distances:
856 2 0.00
857 178 0.01
861 5 0.00
862 4 0.00
863 3 0.00
864 2 0.00
865 191 0.01
866 22 0.00
867 74 0.01
868 209 0.01
869 118 0.01
870 426 0.03
871 286 0.02
872 29 0.00
873 1 0.00
874 107 0.01
875 85 0.01
876 2 0.00
877 31 0.00
878 238 0.02
879 20 0.00
880 134 0.01
881 313 0.02
882 59 0.00
883 66 0.00
884 7 0.00
885 41 0.00
886 117 0.01
887 164 0.01
888 138 0.01
889 376 0.03
890 1045 0.07
891 598 0.04
892 789 0.06
893 501 0.04
894 235 0.02
895 390 0.03
896 281 0.02
897 466 0.03
898 778 0.05
899 1075 0.08
900 1238 0.09
901 200 0.01
902 199 0.01
903 304 0.02
904 748 0.05
905 47 0.00
906 19 0.00
907 14 0.00
908 10 0.00
909 22 0.00
910 53 0.00
911 7 0.00
912 75 0.01
913 46 0.00
914 1 0.00
915 3 0.00
916 1 0.00
917 3 0.00
918 4 0.00
919 1 0.00
920 5 0.00
921 24 0.00
922 57 0.00
923 13 0.00
924 5 0.00
925 7 0.00
926 10 0.00
927 4 0.00
928 5 0.00
929 18 0.00
930 586 0.04
931 10 0.00
932 4 0.00
933 3 0.00
934 8 0.00
935 1 0.00
936 2 0.00
937 111 0.01
938 38 0.00
939 32 0.00
940 24 0.00
941 6 0.00
943 9 0.00
944 2 0.00
945 4 0.00
946 6 0.00
947 9 0.00
948 3 0.00
949 3 0.00
950 2 0.00
951 7 0.00
952 11 0.00
953 6 0.00
954 8 0.00
955 6 0.00
956 3 0.00
957 13 0.00
958 10 0.00
959 8 0.00
960 5 0.00
961 1 0.00
962 5 0.00
963 12 0.00
964 7 0.00
965 16 0.00
966 5 0.00
967 2 0.00
968 10 0.00
969 4 0.00
970 6 0.00
971 7 0.00
972 5 0.00
973 2 0.00
974 4 0.00
975 6 0.00
976 6 0.00
977 1 0.00
980 8 0.00
981 7 0.00
982 3 0.00
983 7 0.00
985 2 0.00
986 6 0.00
987 18 0.00
988 8 0.00
989 1 0.00
990 10 0.00
991 3 0.00
992 5 0.00
993 1 0.00
994 5 0.00
995 7 0.00
996 4 0.00
997 8 0.00
998 17 0.00
999 9 0.00
1000 8 0.00
1001 15 0.00
1002 4 0.00
1003 1 0.00
1004 11 0.00
1005 7 0.00
1006 4 0.00
1008 2 0.00
1009 2 0.00
1010 13 0.00
1011 7 0.00
1012 1 0.00
1013 8 0.00
1014 1 0.00
1015 2 0.00
1016 22 0.00
1017 13 0.00
1018 4 0.00
1019 4 0.00
1020 10 0.00
1021 9 0.00
1022 9 0.00
1023 20 0.00
1024 577 0.04
1025 444 0.03
1026 328 0.02
1027 393 0.03
1028 387 0.03
1029 364 0.03
1030 420 0.03
1031 399 0.03
1032 328 0.02
1033 919 0.06
1034 386 0.03
1035 281 0.02
1036 333 0.02
1037 513 0.04
1038 338 0.02
1039 303 0.02
1040 1099 0.08
1041 522 0.04
1042 332 0.02
1043 386 0.03
1044 317 0.02
1045 536 0.04
1046 398 0.03
1047 191 0.01
1048 728 0.05
1049 688 0.05
1050 185 0.01
1051 317 0.02
1052 301 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCATG
CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCA
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCA
TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
ATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCAAAAAATTTT
Found at i:5980258 original size:26 final size:26
Alignment explanation
Indices: 5980222--5980272 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5980212 TGATTTAGGC
* *
5980222 ATACGGAGTTCATTCCCATTCTAAGG
1 ATACAGAGTTCATTCCCAATCTAAGG
5980248 ATACAGAGTTCATTCCCAATCTAAG
1 ATACAGAGTTCATTCCCAATCTAAG
5980273 ATTGGTCCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAATCTAAGG
Found at i:5981150 original size:26 final size:26
Alignment explanation
Indices: 5981120--5981172 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5981110 GTTGACTTAG
*
5981120 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
5981146 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
5981172 G
1 G
5981173 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5982060 original size:26 final size:26
Alignment explanation
Indices: 5982024--5982102 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
5982014 GTTGACTTAG
5982024 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
5982050 GCATACGAAGTTCATTCCCAGTCTAT
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
5982076 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
5982102 G
1 G
5982103 AGCAAATCAG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:5982991 original size:26 final size:27
Alignment explanation
Indices: 5982961--5983014 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
5982951 GTTGACTTAG
*
5982961 GCATACGGAGTTCATTCCC-AGTGTAA
1 GCATACGGAGTTCATTCCCTAGTCTAA
5982987 GCATACGGAGTTCATTCCCTAGTCTAA
1 GCATACGGAGTTCATTCCCTAGTCTAA
5983014 G
1 G
5983015 ATTGGACGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 19 0.73
27 7 0.27
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (27 bp):
GCATACGGAGTTCATTCCCTAGTCTAA
Found at i:5983869 original size:26 final size:26
Alignment explanation
Indices: 5983840--5983890 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
5983830 TTGACTTAGG
*
5983840 CATACGAAGTTCATTCCTAGTCTAAC
1 CATACGAAGTTCATTCCCAGTCTAAC
* *
5983866 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATTCCCAGTCTAA
5983891 GATCGGATAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAC
Found at i:5986531 original size:26 final size:26
Alignment explanation
Indices: 5986495--5986547 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5986485 GTTGACTTAG
5986495 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5986521 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5986547 G
1 G
5986548 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5986865 original size:188 final size:188
Alignment explanation
Indices: 5986548--5986923 Score: 619
Period size: 188 Copynumber: 2.0 Consensus size: 188
5986538 CCAGTCTAAG
* *
5986548 ATCAGACCGGACCGAGGGTTGCGGCAACACATGCTGGGCTCAGGCATGTGCTGGTGTCGCATTTT
1 ATCAGACCGGACCGAGGGTTACGGCAACACATGCTGGGCTCAGGCATGTGCTGGTGTCACATTTT
* *
5986613 TCTTTGTCGGAGTGCCATCATCGGAGAACCTAACCGGCGGTATTGTGGTTTCGATGATCGGGGGG
66 TCTTTGTCGGAGCGCCATCATCGGAGAACCTAACCGGCGGTATTGTGGTTTCGACGATCGGGGGG
5986678 GC-GAGGGGGGGTGTGCGCACCTGATGTGTGATGGGTGATGGTACTTGGCCCTTATATT
131 GCTGA-GGGGGGTGTGCGCACCTGATGTGTGATGGGTGATGGTACTTGGCCCTTATATT
* * * *
5986736 ATCAGACTGGACCGAGGGTTACGGCAGCATATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTT
1 ATCAGACCGGACCGAGGGTTACGGCAACACATGCTGGGCTCAGGCATGTGCTGGTGTCACATTTT
* * * *
5986801 TCTTTGTCGGGGCGCCATCGTCGGAGAACCTGACCGGCGGTATTGTGGTTTCGGCGATCGGGGGG
66 TCTTTGTCGGAGCGCCATCATCGGAGAACCTAACCGGCGGTATTGTGGTTTCGACGATCGGGGGG
*
5986866 GCTGAGGGGGGTGTGCGCACCTGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT
131 GCTGAGGGGGGTGTGCGCACCTGATGTGTGATGGGTGATGGTACTTGGCCCTTATATT
5986924 GGCCCCCTAT
Statistics
Matches: 174, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
188 172 0.99
189 2 0.01
ACGTcount: A:0.15, C:0.20, G:0.38, T:0.27
Consensus pattern (188 bp):
ATCAGACCGGACCGAGGGTTACGGCAACACATGCTGGGCTCAGGCATGTGCTGGTGTCACATTTT
TCTTTGTCGGAGCGCCATCATCGGAGAACCTAACCGGCGGTATTGTGGTTTCGACGATCGGGGGG
GCTGAGGGGGGTGTGCGCACCTGATGTGTGATGGGTGATGGTACTTGGCCCTTATATT
Found at i:5987591 original size:26 final size:26
Alignment explanation
Indices: 5987555--5987607 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5987545 GTTGACTTAG
*
5987555 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5987581 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5987607 G
1 G
5987608 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5990262 original size:26 final size:25
Alignment explanation
Indices: 5990224--5990272 Score: 89
Period size: 26 Copynumber: 1.9 Consensus size: 25
5990214 GTTGACTTAG
5990224 GCATACGAGTTCATTCCCAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
5990249 GCATACGGAGTTCATTCCCAGTCT
1 GCATAC-GAGTTCATTCCCAGTCT
5990273 CAGATCAGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:5991151 original size:26 final size:26
Alignment explanation
Indices: 5991115--5991167 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
5991105 GTCAACTTCG
5991115 GCATACGGAGTTCATTCCCT-GTCTAA
1 GCATACGGAGTTCATT-CCTAGTCTAA
5991141 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
5991167 G
1 G
5991168 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:5992055 original size:26 final size:26
Alignment explanation
Indices: 5992019--5992071 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5992009 GTTGACTTAG
5992019 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
5992045 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5992071 G
1 G
5992072 GTCAGAATGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5993815 original size:26 final size:26
Alignment explanation
Indices: 5993779--5993831 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5993769 GTTGACTTAG
*
5993779 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
*
5993805 GCATACGGAGTACATTCCCAGTGTAA
1 GCATACGGAGTACATTCCCAGTCTAA
5993831 G
1 G
5993832 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAGTCTAA
Found at i:5994708 original size:26 final size:26
Alignment explanation
Indices: 5994678--5994730 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5994668 GTCGACTTAG
5994678 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5994704 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
5994730 G
1 G
5994731 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5996322 original size:26 final size:26
Alignment explanation
Indices: 5996292--5996342 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5996282 TGACTTAGGC
*
5996292 ATACGGAGTTCATTACCAGTCTAAGT
1 ATACGAAGTTCATTACCAGTCTAAGT
*
5996318 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTACCAGTCTAAG
5996343 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTACCAGTCTAAGT
Found at i:5997231 original size:26 final size:26
Alignment explanation
Indices: 5997195--5997273 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
5997185 GTTGACTTAG
*
5997195 GCATACGGAGTTCATAGCCAATCTAA
1 GCATACGGAGTTCATACCCAATCTAA
* *
5997221 GCATATGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATACCCAATCTAA
* *
5997247 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAATCTAA
5997273 G
1 G
5997274 ATCGGACCAG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAATCTAA
Found at i:5998153 original size:26 final size:26
Alignment explanation
Indices: 5998123--5998175 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
5998113 GTTGACTTAG
*
5998123 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGGCTAA
5998149 GCATACGGAGTTCATTCCCAGGCTAA
1 GCATACGGAGTTCATTCCCAGGCTAA
5998175 G
1 G
5998176 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGGCTAA
Found at i:5999378 original size:871 final size:867
Alignment explanation
Indices: 5995417--5999704 Score: 4079
Period size: 871 Copynumber: 4.8 Consensus size: 867
5995407 TGTCGGTTGG
* * *** * ** *
5995417 CTTAGGCATACGCAATTCATTCCCAGTCTAAGATCAAATCAGGACCGAGGGTTGTGGTAGCACAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA-CCGGACCGAGGGTTACGGCAGCACAT
* * * ** * * * *
5995482 TCTAGGCTCGGGCACGTGTTGGTGTCGCATTTTTCTTC-GTCAGGGCACCATCGCCGAAGCATCG
65 GCT-GGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCACT-GGGGCACCATCGTCGGAGCATCG
* * * * * *
5995546 TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGAGGGGGCCG-GGGGGTGCGCGCACA
128 TCGAAGAACCTAACCGTCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACA
* * * *
5995610 TGATTTGTGTTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAG
193 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * *
5995675 AACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTAT
258 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
5995740 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
323 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAT
* * * *
5995805 TTTTTTATGCGTGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAAATCCTAT
388 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-T
* * * * * *
5995870 -TGAAAGAATTTTAAAAAATCCCAAACAGC-AAAAAGTTTCAAAAATCGTGAAAAATAAAAAACG
452 CCGAAAAAATTTTAAAAAATCCCGAAC-CCTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACG
* * * *
5995933 GGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATA
516 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATA
* * * *
5995998 AAAATGGCATT-GCAGTAAAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCAC
581 AAAATGGCATTGGAATTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * *
5996062 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCTCCTGCCCGCTCGTTTCGTCGGTTGGC
646 GGCTTACGCAT-CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCAGTTGGC
* * * ** ** *
5996127 TTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAAGATT
710 CTAGGCATACGGAGTTCATTCCCAGACTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAAGATC
* * * * * ** * * *
5996192 GGTAGCACGTAGAGGGGGACCCG-GTCGATCCCTGGCTTGCGCATCCTACCCTTCTGGCCAGCTG
775 AGCAGCACATAGAGGGGGACCCGACT-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCGAGCCG
* *
5996256 AGCACCCGCACGCTCATTTCATGGGTTGA
839 AGCACCCGCACGCTCGTTTCATGGGCTGA
5996285 CTTAGGCATACGGAGTTCATTACCAGTCTAAGTATACGAAGTTCATTCCCAGTCTAAGATTGGAC
1 C-T-----TA--G-G--CA-T---A--C---G-----G-AGTTCATTCCCAGTCTAAGATTGGAC
* *
5996350 CGGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTACC-TGCATTTTTCTTC
40 CGGACCGAGGGTTACGGCAGCACATGCT-GGCTCGGGCATGTGTTGGTGCCAT--ATTTTTCTTC
* * * * * * *
5996414 -GTCGGGGCACCATCGTC-AAGGCATCGCCGAAAAACCTAACTGACGGCATTGGGGTTTCGACGA
102 ACT-GGGGCACCATCGTCGGA-GCATCGTCGAAGAACCTAACCGTCGGCATTGGGGTTCCGACGA
* * *
5996477 TCGGGGGGCCGGAGGGGCCGGAGGGGGTGTGCGCAAATGATGTGTGATGGGTTCTGGTACTTGGC
165 TC-----G--GG-GGGGCC-GAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* *
5996542 CCTTATATTGGCCCCCTATCCCTCATTAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
221 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
5996607 GATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGG
286 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
*
5996672 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAA
351 TCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * ** * *
5996736 AGATCACGTCTACCATGTTTATGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCG
416 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCC
* * * * * *
5996801 TGAAAAGTTTCAAAAATCATGAAAAATAGAACATGAGTCGTCTTGCCATAAAACTTCACGTGAAG
481 TAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * ** **
5996866 GCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATATCATTGGCACGTAGAAATATGAAG
546 GCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGG-AATTAGAAATATGAAG
* * * * *
5996931 ATGTGCCTAAACCCACCTACAACCTTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGAC
610 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCAT-CCGTCTCTCTGGCCGGC
* * ** * * * *
5996996 GAAGTGCCCGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATATGCAGTTCATTCCCAGTCTA
674 GTAGTGCCCGCCCGCCCGCTCATTTCGTCAGTTGGCCTAGGCATACGGAGTTCATTCCCAGACTA
* * * ** *
5997061 AGATCAGACC-GAACCGAGGGTTGCAGTAGCATGATC-GATAGCATGTAGAGAGGGACCCGA-TC
739 AGATCAGACCAG-ACCGAGGGTTGCAGCAGCAAGATCAG-CAGCACATAGAGGGGGACCCGACT-
* * ** * * * * * *
5997123 GATCCTCGGCTTACGCATCCTACCCCTCTAGCCGA-CTGAGCACCCGCTCGCTCGTCTCGTGGGT
801 GATCCCCGGCTTGCGCATCCCGCCCCTCT-GGCGAGCCGAGCACCCGCACGCTCGTTTCATGGGC
5997187 TGA
865 TGA
** * * ** * **
5997190 CTTAGGCATACGGAGTTCATAGCCAATCTAAGCATATGGAGTTCATACCCAGTCTAAGCATACGG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-TGGA--CCGGA-CC-G---AGGGTTACGG
* * * * ** *** *
5997255 -AGTTCATTCCCA-GTCTAAGATCGGACCAGACCGA-GGGTTACGGCAGCACATGCTAGGCTTAA
57 CAG--CA----CATG-CT-GGCTCGG----G--C-ATGTGTT--GG-TGC-CATATTTTTCTTCA
******** ***** * ** ** * * * * * **
5997317 GCATGTCTTGGTTTCGTATTTTTCTTCACCGGGGCACC--ATCGCCGGAGCATCGTCAGAGAACC
103 -C-TGGGGCACCATCGT-CGGAGCATCGTCGAAGAACCTAACCGTC-G-GCAT--T-GGGGTTCC
* * * **** * * *
5997380 TGATCGGT-GGCATTGGGGTTCCGATGATCGGGG-G-GCCCGGGGGGGTGTGCACACAT-GATG-
160 -GA-CGATCGG----GGGG-GCCGA-G---GGGGTGTGCGC-ACATGATGTG--C-GATGGGTGC
* ** **
5997440 TGCG-A-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
210 TG-GTACTTGGCCCTTATA-TT-G-----------GCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
5997503 TCACACCCCCTTAAAGATCATTTG-GAATTTTACAGGTTTGCTGTCAGTAGCCACTAAAGTGTCT
261 TCACACCCCCTTAAAGAGCATTTGAG-ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
5997567 GAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTCGCCATTAAAGTTTTTA
325 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-T-T---C----AAGTTTTTA
*
5997632 GCTGAATTTTTTTGTGCATGCCAACAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
381 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * * *
5997697 CTCCTTCC-AAAAAATTTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
446 CTCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCCTAAAAAGTTTTAAAAATCGTGAAAAATAG
*
5997761 AAAACGAGTCGTGCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTAGA
510 AAAACGAGTCGT-CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGA
* * *
5997826 TGCCATAAAACTGGCATTGGCACATCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
574 AGCCATAAAAATGGCATTGG-A-ATTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
*
5997891 TCGATCCACGGC--AC-C--CCGTCTCTCTGGCCGGCGTAGTGCCCGGTCCGCCCGCTCATTTCG
637 TCGATCCACGGCTTACGCATCCGTCTCTCTGGCCGGCGTAGTGCCC-GCCCGCCCGCTCATTTCG
* *
5997951 TCGGTTGGCCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGC
701 TCAGTTGGCCTAGGCATACGGAGTTCATTCCCAGACTAAGATCAGACCAGACCGAGGGTTGCAGC
* *
5998016 AGCAAGATCAGCAGCACATAGAGGGGGACCCGACTGATCCCTGGCTTGCGCATCCCGGCCCTCTG
766 AGCAAGATCAGCAGCACATAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * *
5998081 GCTAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGA
831 GCGAGCCGAGCACCCGCACGCTCGTTTCATGGGCTGA
5998118 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGGCTAAGATCGGAC
1 CTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---------A---T----T-GGAC
* * * * *
5998183 CAGACCGAGGGTTGCGACACCACATGCTGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTC-GT
40 CGGACCGAGGGTTACGGCAGCACATGCTGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCACT
* * * * * *
5998247 CGGGGCACCATCGTCGGGGCATCGTCGAAGAACCTGACTGGCGGCACTGGGGTTCCAACGATCGG
105 -GGGGCACCATCGTCGGAGCATCGTCGAAGAACCTAACCGTCGGCATTGGGGTTCCGACGATCGG
* *
5998312 GGGGGCCGA-GGGGTGTGCGCACATGTTGTGCGATGGGTGCTGTTACTTGGCCCTTATATTGGCC
169 GGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
5998376 ACCTATCCCTCATCAAACCTCGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
234 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
5998441 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
299 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
5998506 TACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
364 TACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* **
5998571 CATGTTTACGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCCTAAAAAGTTTTAA
429 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCCTAAAAAGTTTTAA
* * * **
5998636 AAATCGTGAAAAACAGAAAATGAGTCATCTTGTCGTTGAAACTTCACGTGAAGGCTTAAGGGACC
494 AAATCGTGAAAAATAGAAAACGAGTCGTCTTG-CCATGAAACTTCACGTGAAGGCTTAAGGGACC
* **
5998701 ATTGTATGAATTTAGAAGCCATAAAAATGGTATTGGAATGTAGAAATACAAAGATGTGCCTAAAC
558 ATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGAAT-TAGAAATATGAAGATGTGCCTAAAC
* * *
5998766 CCACCT-CTCACCCTATCGATCTACGGCTTGCGCATCCTGTCTCTCTAGCCGGCGTAGTGCCCGC
622 CCACCTAC-CACCCTATCGATCCACGGCTTACGCATCC-GTCTCTCTGGCCGGCGTAGTGCCCGC
* * * * ***
5998830 CCGCCCGCTCGTTTTGTCAGTTGGCTTAGGCGTACGGAGTTCATTCCCAGACTAAGATCAGATTG
685 CCGCCCGCTCATTTCGTCAGTTGGCCTAGGCATACGGAGTTCATTCCCAGACTAAGATCAGACCA
* * * * * * * *
5998895 GATCGAGGGTTGCGGTAGTAGGATCGGCAGCACGTAGAGGGGGACCCG-GTCGATCCCCGGCTTG
750 GACCGAGGGTTGCAGCAGCAAGATCAGCAGCACATAGAGGGGGACCCGACT-GATCCCCGGCTTG
* *
5998959 CGCATCCCGCCCCTCTGGCCGA-CCGAGCACCCGCACG-TGTGTTTCGTGGGCTGA
814 CGCATCCCGCCCCTCTGG-CGAGCCGAGCACCCGCACGCT-CGTTTCATGGGCTGA
* * * *
5999013 CTTAGGCATTCGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTACGGTAGTACATG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCACATG
* * *
5999078 CTGGGCTCGGGCATTTGTTGGTGCCACATTTTTCTTCACTGGGGCACCATCATCGGAGCATCGTC
66 CT-GGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCACTGGGGCACCATCGTCGGAGCATCGTC
5999143 GAAGAACCTAACCGTCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATG
130 GAAGAACCTAACCGTCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATG
* *
5999208 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCAAGAA
195 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
5999273 CTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTT
260 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
** * *
5999338 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGTTGAATTT
325 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTT
* * *
5999403 TTTAGTGCATGCCAAGAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
390 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * *
5999468 AAGAAATTTTAAAAAATCCGGAACCGC-AAAAAGTTTTGAAAATCGTGAAACATAGAAAACGAGT
455 AAAAAATTTTAAAAAATCCCGAACC-CTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGT
* *
5999532 -GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAA
519 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAA
* *
5999596 ATGGCATTGGCA-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGC
584 ATGGCATTGGAATTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
5999660 TTTCGCATCCCGTCTCTCTGGTCGGTGTAGTGCCCGCCTGCCCGC
649 TTACGCAT-CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
5999705 CTGCCCACTC
Statistics
Matches: 2829, Mismatches: 401, Indels: 381
0.78 0.11 0.11
Matches are distributed among these distances:
867 83 0.03
868 4 0.00
869 90 0.03
870 104 0.04
871 315 0.11
872 1 0.00
874 3 0.00
876 1 0.00
877 2 0.00
879 18 0.01
880 4 0.00
881 4 0.00
883 3 0.00
884 2 0.00
885 2 0.00
886 2 0.00
887 2 0.00
888 9 0.00
889 7 0.00
890 53 0.02
891 193 0.07
892 8 0.00
893 56 0.02
894 87 0.03
895 181 0.06
896 26 0.01
897 2 0.00
898 1 0.00
899 9 0.00
900 131 0.05
901 4 0.00
902 13 0.00
903 164 0.06
904 224 0.08
905 255 0.09
906 7 0.00
907 4 0.00
908 16 0.01
909 11 0.00
910 9 0.00
911 7 0.00
912 9 0.00
913 13 0.00
914 3 0.00
917 4 0.00
918 4 0.00
920 1 0.00
921 131 0.05
922 4 0.00
923 5 0.00
924 1 0.00
926 14 0.00
927 33 0.01
928 178 0.06
929 10 0.00
930 42 0.01
931 102 0.04
932 67 0.02
933 54 0.02
934 2 0.00
935 1 0.00
937 2 0.00
939 5 0.00
940 4 0.00
941 1 0.00
944 2 0.00
945 7 0.00
946 1 0.00
948 2 0.00
949 2 0.00
950 3 0.00
951 2 0.00
952 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (867 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCACATG
CTGGCTCGGGCATGTGTTGGTGCCATATTTTTCTTCACTGGGGCACCATCGTCGGAGCATCGTCG
AAGAACCTAACCGTCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTT
TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
AAAAATTTTAAAAAATCCCGAACCCTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAAT
GGCATTGGAATTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
ACGCATCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCAGTTGGCCTAGGC
ATACGGAGTTCATTCCCAGACTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAAGATCAGCAGC
ACATAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCGAGCCGAGCACCC
GCACGCTCGTTTCATGGGCTGA
Found at i:5999774 original size:26 final size:26
Alignment explanation
Indices: 5999737--5999789 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
5999727 TTGACTTAGC
5999737 GCATACTGAGTTCATTCCCAGT-CTAA
1 GCATACTGAGTTCATT-CCAGTCCTAA
5999763 GCATAC-GAAGTTCATTCCAGTCCTAA
1 GCATACTG-AGTTCATTCCAGTCCTAA
5999789 G
1 G
5999790 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACTGAGTTCATTCCAGTCCTAA
Found at i:6000627 original size:26 final size:26
Alignment explanation
Indices: 6000591--6000643 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6000581 GTTGACTTAG
*
6000591 GCATACGGAGTTCATTGCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
6000617 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
6000643 G
1 G
6000644 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:6002776 original size:26 final size:26
Alignment explanation
Indices: 6002740--6002792 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
6002730 GTTAACTTAG
* * *
6002740 GCATATGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTAATTACCAATCTAA
*
6002766 GCATACGGAGTTAATTCCCAATCTAA
1 GCATACGGAGTTAATTACCAATCTAA
6002792 G
1 G
6002793 ATTGAACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTACCAATCTAA
Found at i:6003666 original size:25 final size:26
Alignment explanation
Indices: 6003636--6003684 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
6003626 GTTGACTCAG
6003636 GCATAC-GAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
6003661 GCATACGGAGTTCATTCCTAGTCT
1 GCATACGGAGTTCATTCCTAGTCT
6003685 GAGATCGGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:6004553 original size:25 final size:25
Alignment explanation
Indices: 6004525--6004574 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
6004515 TTGACTCAGG
6004525 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
6004550 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
6004575 GATCGGACTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (25 bp):
CATACGGAGTTCATTCCCAGTCTAA
Found at i:6005460 original size:26 final size:26
Alignment explanation
Indices: 6005417--6005468 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
6005407 GTTGACGTAG
* *
6005417 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
*
6005443 GCATACAGAGCTCTTTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
6005469 AATCGGACCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:6006343 original size:26 final size:26
Alignment explanation
Indices: 6006307--6006359 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6006297 GTTGACTTAG
*
6006307 GCATATGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
*
6006333 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
6006359 G
1 G
6006360 ATTGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:6007237 original size:26 final size:26
Alignment explanation
Indices: 6007205--6007257 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6007195 GTTGACTTAG
*
6007205 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6007231 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6007257 G
1 G
6007258 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6008141 original size:26 final size:26
Alignment explanation
Indices: 6008105--6008157 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6008095 GTTGACTTAG
*
6008105 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAGGGAGTTCATTCCCAGTCTAA
6008131 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATAGGGAGTTCATTCCCAGTCTAA
6008157 G
1 G
6008158 ATTGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCCAGTCTAA
Done.